Catalase

From Proteopedia

Three types of catalases. The first two (human and bacterial) use hemoglobin-bound iron to bind to oxygen, while the third (a pseudocatalase) uses manganese (metals shown in light blue). From Molecule of the Month (RCSB PDB) by David Goodsell based on PDB-IDs 1qqw, 1iph, and 1jku.

Function

Catalase (CAT) catalyzes the conversion of hydrogen peroxide to water and oxygen. CAT contains porphyrin-heme Fe group which reacts with the hydrogen peroxide. CAT containing Mn are called pseudocatalase (PCAT).^[1] Catalase-peroxidase (CAT KatG) is a bifunctional enzyme with both catalase and peroxidase activities. CAT KatG cofactor is a heme group. It provides defense against oxidative stress by reducing hydrogen peroxide. Mutations in CAT KatG can cause resistance to the anti-malarial drug isoniazid (INH).^[2] Catalase-phenol oxidase (CATPO) is a heme-containing CAT which shows phenol oxidase activity.^[3]

There are four oxygen atoms total in the reactants. Which do you think will be paired up after the reaction is completed (i.e. in the dixoxygen molecule O₂ from as one of the products)?

Structure

E. coli catalase Hpii tetramer showing the heme groups in yellow. PDB-ID 1gge Show:Asymmetric Unit Biological Assembly Drag the structure with the mouse to rotate   Export Animated Image Catalase is a , each polypeptide chain is over 500 amino acids long. It contains that allow the enzyme to react with the hydrogen peroxide. in E. coli catalase is by the four nitrogen atoms of the heme molecule, an oxygen from a tyrosine side chain and a water molecule (water molecules are shown as red spheres).[4] As hydrogen peroxide enters the active site, it interacts with the amino acids Asn147 (asparagine at position 147) and His74, causing a proton (hydrogen ion) to transfer between the oxygen atoms. The free oxygen atom coordinates, freeing the newly formed water molecule and Fe(IV)=O. Fe(IV)=O reacts with a second hydrogen peroxide molecule to reform Fe(III)-E and produce water and oxygen. The reactivity of the iron center may be improved by the presence of the phenolate ligand of Tyr357 in the fifth iron ligand, which can assist in the oxidation of the Fe(III) to Fe(IV). The efficiency of the reaction may also be improved by the interactions of His74 and Asn147 with reaction intermediates.[5]

pH dependence

The following video shows how the rate of the potato catalase depends on the pH. Do you have a hypothesis why both low and high pH slow down the enzyme compared to neutral pH? Which acid/base groups are part of the mechanism described above? How is the structure (shape) of the enzyme affected by changes in pH?

See also

Ann Taylor/Catalase
Human Erythrocyte Catalase
Catalase 2CAG bcce2014.
See also Catalase (Hebrew).

3D Structures of catalase

Catalase 3D structures

References

1. ↑ Purwar N, McGarry JM, Kostera J, Pacheco AA, Schmidt M. Interaction of Nitric Oxide with Catalase: Structural and Kinetic Analysis. Biochemistry. 2011 May 6. PMID:21524057 doi:10.1021/bi200130r
2. ↑ Bertrand T, Eady NA, Jones JN, Jesmin, Nagy JM, Jamart-Gregoire B, Raven EL, Brown KA. Crystal structure of Mycobacterium tuberculosis catalase-peroxidase. J Biol Chem. 2004 Sep 10;279(37):38991-9. Epub 2004 Jul 1. PMID:15231843 doi:10.1074/jbc.M402382200
3. ↑ Koclar Avci G, Coruh N, Bolukbasi U, Ogel ZB. Oxidation of phenolic compounds by the bifunctional catalase-phenol oxidase (CATPO) from Scytalidium thermophilum. Appl Microbiol Biotechnol. 2013 Jan;97(2):661-72. doi: 10.1007/s00253-012-3950-2., Epub 2012 Feb 28. PMID:22370948 doi:http://dx.doi.org/10.1007/s00253-012-3950-2
4. ↑ Melik-Adamyan W, Bravo J, Carpena X, Switala J, Mate MJ, Fita I, Loewen PC. Substrate flow in catalases deduced from the crystal structures of active site variants of HPII from Escherichia coli. Proteins. 2001 Aug 15;44(3):270-81. PMID:11455600
5. ↑ Melik-Adamyan W, Bravo J, Carpena X, Switala J, Mate MJ, Fita I, Loewen PC. Substrate flow in catalases deduced from the crystal structures of active site variants of HPII from Escherichia coli. Proteins. 2001 Aug 15;44(3):270-81. PMID:11455600