Image:Spike storymorph.gif
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Spike_storymorph.gif (720 × 521 pixel, file size: 2.8 MB, MIME type: image/gif)
Summary
Morph showing a fictional transition from pre-fusion to post-fusion conformation of the SARS-CoV-2 spike protein, based on a superposition of the common C-alpha coordinates by Eric Martz (Image:Morf-6xr8-6xra-theis-cao.pdb).
The morph was created using the Image:Storymorph.spt Jmol scripts. The following domain definitions and timings of transitions were applied:
structures = [{1.1}, {1.2}]
helixN = {912-984}
helixC = {1128-1162}
base = {1076-1127}
core = {not helixN and not helixC and not base}
domains = [
[core],
[{base and chain="A"}, {1075 and chain="A"}],
[{helixN and chain="A"},{985:A}],
[{helixC and chain="A"}{1127:A}],
[{base and chain="B"}, {1075 and chain="B"}],
[{helixN and chain="B"},{985:B}],
[{helixC and chain="B"}{1127:B}],
[{base and chain="C"}, {1075 and chain="C"}],
[{helixN and chain="C"},{985:C}],
[{helixC and chain="C"}{1127:C}], ]
timing = [
[0.05, 0.8, 0],
[0.05, 0.8, 0],
[0, 0.5, 0],
[0.2, 1.0, 1],
[0.05, 0.8, 0],
[0, 0.5, 0],
[0.2, 1.0, 1],
[0.05, 0.8, 0],
[0, 0.5, 0],
[0.2, 1.0, 1],
]
script storymorph.spt
superimpose(structures, domains[1])
morph(100, structures, domains, timing)
Licensing
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File history
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| Date/Time | User | Dimensions | File size | Comment | |
|---|---|---|---|---|---|
| (current) | 13:21, 4 May 2021 | Karsten Theis (Talk | contribs) | 720×521 | 2.8 MB | Morph showing a fictional transition from pre-fusion to post-fusion conformation of the SARS-CoV-2 spike protein, based on a superposition of the common C-alpha coordinates by Eric Martz (Image:Morf-6xr8-6xra-theis-cao.pdb). |
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