User:Jaime Prilusky/JSmolExtension

From Proteopedia

Some more examples

JSmol applet in the same page

wikiPageContents

Some caption here, enabled for wikitext, i.e double square brackets 3rec Show:Asymmetric Unit Biological Assembly

Drag the structure with the mouse to rotate

Export Animated Image

The applet on the right is generated from this code
<jmol><jmolApplet>
<title> wikiPageContents </title>
<float>right</float>
<color>red</color><size>200</size>
<uploadedFileContents>chair.xyz</uploadedFileContents>
<pspeed>2</pspeed>
<caption>Some caption here, enabled for wikitext, i.e double square brackets [[3rec]]</caption>
<controls>spin popup</controls>
<animgifurl>http://proteopedia.org/wiki/images/8/8d/2cts.gif</animgifurl>
</jmolApplet></jmol>

• <caption> Text displayed below the applet
• <captioncss> CSS style for Caption
• <color> Applet background colour
• <controls> Draws control buttons [ all | spin | quality | popup ]
• <float> [ left | right ]
• <frame> true: draws frame around applet
• <pspeed> Platform speed for applet [ 1 .. 8 ]
• <script> Jmol script, i.e. load $NC(Cl)(C)O;
• <size> Applet side in pixels
• <title> Text displayed on top of the applet
• <titlecss> CSS style for Title
• <animgifurl> URL for animated GIF to display before rendering the model
• <uploadedfilecontents> renders uploaded structure
• <urlcontents> renders structure from URL
• <wikipagecontents> renders content from wiki page

JSmol applet in a popup window

jmolFile <jmolFile text="Explanatory text for link">Chair.xyz</jmolFile>

... 'and what is the use of a book,' thought Alice 'without pictures or conversation?'

jmolSmiles <jmolSmiles text='nitrobenzene'>c1ccccc1[N+](=O)[O-]</jmolSmiles>

Both versions, using the target as a link or using an alternate text, are supported: nitrobenzene and c1ccccc1[N+](=O)[O-]

jmolAppletButton

jmolPdb <jmolPdb>3rec</jmolPdb> 3rec