exit; # Jmol state version 14.2.2_2014.06.29 2014-06-28 18:17; # fullName = "jmolApplet0__589048894587904__"; # documentBase = "http://proteopedia.org/wiki/index.php?title=Rossmann_fold&action=edit"; # codeBase = "http:/wiki/extensions/jsmol/j2s/"; function _setWindowState() { # width 350; # height 350; stateVersion = 1402002; background [xffffff]; axis1Color = "[xff0000]"; axis2Color = "[x008000]"; axis3Color = "[x0000ff]"; set ambientPercent 45; set diffusePercent 84; set specular true; set specularPercent 22; set specularPower 40; set celShading false; set celShadingPower 10; set specularExponent 6; set zShadePower 3; statusReporting = true; } function _setFileState() { set allowEmbeddedScripts false; set appendNew true; set appletProxy ""; set applySymmetryToBonds false; set autoBond true; set bondRadiusMilliAngstroms 150; set bondTolerance 0.45; set defaultLattice {0 0 0}; set defaultLoadFilter ""; set defaultLoadScript ""; set defaultStructureDssp true; set defaultVDW Jmol; set forceAutoBond false; # set defaultDirectory ""; # set loadFormat "http://www.rcsb.org/pdb/files/%FILE.pdb.gz"; # set loadLigandFormat "http://www.rcsb.org/pdb/files/ligand/%FILE.cif"; # set smilesUrlFormat "http://cactus.nci.nih.gov/chemical/structure/%FILE/file?format=sdf&get3d=True"; # set nihResolverFormat "http://cactus.nci.nih.gov/chemical/structure/%FILE"; # set pubChemFormat "http://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/%FILE/SDF?record_type=3d"; # set edsUrlFormat "http://eds.bmc.uu.se/eds/dfs/%LC13/%LCFILE/%LCFILE.omap"; # set edsUrlCutoff "http://eds.bmc.uu.se/eds/dfs/%LC13/%LCFILE/%LCFILE.sfdat"; set bondingVersion 0; set legacyAutoBonding false; set legacyHAddition false; set minBondDistance 0.4; set minimizationCriterion 0.001; set minimizationSteps 100; set pdbAddHydrogens false; set pdbGetHeader false; set pdbSequential false; set percentVdwAtom 23; set smallMoleculeMaxAtoms 40000; set smartAromatic true; reloadfile = false; if (loadedfileprev != "303552fb0cf9c1226ee5a2599a1564ba"); load /*file*/"/cgi-bin/getfrozenstructure?303552fb0cf9c1226ee5a2599a1564ba"; loadedfileprev = "303552fb0cf9c1226ee5a2599a1564ba"; reloadfile = true; endif; } function _setParameterState() { set defaultanglelabel "%VALUE %UNITS"; set defaultcolorscheme "jmol"; set defaultdistancelabel "%VALUE %UNITS"; set defaultdrawarrowscale 0.5; set defaultlabelpdb "%m%r"; set defaultlabelxyz "%a"; set defaultlattice "{0 0 0}"; set defaultloadfilter ""; set defaultloadscript ""; set defaulttorsionlabel "%VALUE %UNITS"; set defaulttranslucent 0.5; set defaultvdw "Jmol"; set allowembeddedscripts true; set allowmoveatoms false; set allowrotateselected false; set animationmode "ONCE"; set appletproxy ""; set applysymmetrytobonds false; set atompicking true; set atomtypes ""; set autobond true; set autofps false; set axes window; set axesmode 0; set axesscale 2.0; set backbonesteps false; set bondmodeor false; set bondradiusmilliangstroms 150; set bondtolerance 0.45; set cartoonbaseedges false; set cartoonfancy false; set cartoonladders false; set cartoonrockets false; set cartoonsfancy false; set chaincasesensitive false; set dataseparator "~~~"; set defaultstructuredssp true; set delaymaximumms 0; set dipolescale 1.0; set disablepopupmenu false; set displaycellparameters true; set dotdensity 3; set dotscale 1; set dotsselectedonly false; set dotsurface true; set dragselected false; set drawfontsize 14.0; set drawhover false; set drawpicking false; set dsspcalculatehydrogenalways true; set ellipsoidarcs false; set ellipsoidarrows false; set ellipsoidaxes false; set ellipsoidaxisdiameter 0.02; set ellipsoidball true; set ellipsoiddotcount 200; set ellipsoiddots false; set ellipsoidfill false; set energyunits "kJ"; set forceautobond false; set gestureswipefactor 1.0; set greyscalerendering false; set hbondsangleminimum 90.0; set hbondsbackbone false; set hbondsdistancemaximum 3.25; set hbondsrasmol true; set hbondssolid false; set helixstep 1; set helppath "http://chemapps.stolaf.edu/jmol/docs/index.htm"; set hermitelevel 0; set hidenameinpopup false; set hidenavigationpoint false; set highresolution false; set historylevel 0; set hoverdelay 0.5; set imagestate true; set iskiosk false; set isosurfacekey false; set isosurfacepropertysmoothing true; set isosurfacepropertysmoothingpower 7; set justifymeasurements false; set loadatomdatatolerance 0.01; set measureallmodels false; set measurementlabels true; set meshscale 1; set messagestylechime false; set minbonddistance 0.4; set minimizationcriterion 0.001; set minimizationrefresh true; set minimizationsilent false; set minimizationsteps 100; set minpixelselradius 6; set modulationscale 1.0; set monitorenergy false; set multiplebondradiusfactor 0.0; set multiplebondspacing -1.0; set navigationperiodic false; set navigationspeed 5.0; set nmrpredictformat "http://www.nmrdb.org/service/predictor?POST?molfile="; set nmrurlformat "http://www.nmrdb.org/predictor?POST?molfile="; set partialdots false; set particleradius 20.0; set pdbaddhydrogens false; set pdbgetheader false; set pdbsequential false; set percentvdwatom 23; set pickingspinrate 10; set picklabel ""; set pointgroupdistancetolerance 0.2; set pointgrouplineartolerance 8.0; set propertyatomnumbercolumncount 0; set propertyatomnumberfield 0; set propertycolorscheme "roygb"; set propertydatacolumncount 0; set propertydatafield 0; set quaternionframe "p"; set rangeselected false; set ribbonaspectratio 16; set ribbonborder false; set rocketbarrels false; set saveproteinstructurestate true; set selectallmodels true; set selecthetero true; set selecthydrogen true; set sheetsmoothing 1.0; set showhiddenselectionhalos false; set showhydrogens true; set showkeystrokes true; set showmeasurements true; set showmultiplebonds true; set shownavigationpointalways false; set showunitcelldetails true; set showunitcellinfo true; set slabbyatom false; set slabbymolecule false; set smallmoleculemaxatoms 40000; set smartaromatic true; set solventprobe false; set solventproberadius 1.2; set ssbondsbackbone true; set starwidth 0.05; set stereodegrees -5.0; set strandcountformeshribbon 7; set strandcountforstrands 5; set strutdefaultradius 0.3; set strutlengthmaximum 7.0; set strutsmultiple false; set strutspacing 6; set testflag1 false; set testflag2 false; set testflag3 false; set testflag4 false; set tracealpha true; set translucent true; set twistedsheets false; set useminimizationthread true; set usenumberlocalization true; set vectorscale 1.0; set vectorscentered false; set vectorsymmetry false; set vibrationscale 1.0; set waitformoveto true; set wireframerotation false; set zdepth 0; set zoomheight false; set zoomlarge true; set zslab 50; # user-defined atom sets; @~anomalous_atoms ({}); @~backbone_invisible ({}); @~hydroxy_unchained_nucs ({}); @~nobackbone_aas ({}); @~nophosphorus_nucs ({}); @~protein ({0:2975}); @~unbondable_aas ({}); @~unchained_aas ({}); @~unchained_nucs ({}); } function _setModelState() { calculate hbonds; select all; wireframe off; spacefill off; dots off; backbone off; trace off; ribbon off; cartoon off; strands off; rocket off; meshribbon off; # isosurface off; halos off; color cpk; hbonds off; select ({34:62 210:242 526:564 583:621 653:679 709:730 747:776 793:809 896:919 1065:1106 1219:1256 1469:1495 1533:1556 1576:1605 1633:1656 1670:1698 1715:1734 1833:1851 1934:1957 1985:2022 2067:2097 2325:2387 2397:2448 2480:2543 2571:2646 2660:2714}); color atoms opaque [x00ffff]; select ({72:172 312:444 464:502 939:1023 1115:1202 1343:1457 1743:1789 2115:2253 2723:2835 2923:2975}); color atoms opaque [xff0000]; select ({0:33 63:71 173:209 243:311 445:463 503:525 565:582 622:652 680:708 731:746 777:792 810:895 920:938 1024:1064 1107:1114 1203:1218 1257:1342 1458:1468 1496:1532 1557:1575 1606:1632 1657:1669 1699:1714 1735:1742 1790:1832 1852:1933 1958:1984 2023:2066 2098:2114 2254:2324 2388:2396 2449:2479 2544:2570 2647:2659 2715:2722 2836:2922}); color atoms opaque chain; select ({2988 2990 2993 2994 2996 2998 3001 3005 3014}); Spacefill 1.85; select ({2977:2979 2982 2984 2986 3000 3003 3018 3020 3022 3024 3026:3028}); Spacefill 1.7; select ({2976 3025}); Spacefill 2.08; select ({2980 2981 2983 2985 2987 2989 2991 2992 2995 2997 2999 3002 3004 3006:3013 3015:3017 3019 3021 3023}); Spacefill 1.95; select ({0:2975 3029:3153}); Spacefill 0; select BONDS ({0:3133}); wireframe 0; select ({0:250}); Rockets on; set echo off; hover "%U"; frank on; font frank 16 SansSerif Plain; select *; set fontScaling false; } function _setPerspectiveState() { if (reloadfile) { set perspectiveModel 11; } set scaleAngstromsPerInch 0; set perspectiveDepth true; set visualRange 5; set cameraDepth 3; boundbox corners {33.93899999999999 -7.668999999999997 -14.579999999999998} {96.263 36.937 48.407} # volume = 175105.393355528; if (reloadfile) { center {67.1979403931515 16.490083069118597 14.295878249841468}; } # removed moveto -1.0 {0 0 1 0} 100.0 0.0 0.0 {65.101 14.633999999999999 16.9135} 41.871839181819894 {0 0 0} 0 0 0 3.0 0.0 0.0; # removed save orientation "default"; slab 100;depth 0; set slabRange 0.0; set spinX = 0; set spinY = 5; set spinZ = 0; spinFps = 20; } function _setSelectionState() { select ({0:250}); set hideNotSelected false; } function _setState() { # initialize; zoomto 1.0 100; delay 0.5; select all; labels off; measurements off; set refreshing false; _setWindowState; _setFileState; _setParameterState; _setModelState; _setPerspectiveState; _setSelectionState; set platformSpeed DEFAULTPSPEED; set refreshing true; delay 1.0; moveto 1.0 { -857 -503 112 110.0} 100.0 0.0 0.0 {67.1979403931515 16.490083069118597 14.295878249841468} 38.261701731824026 {0 0 0} 0 0 0 3.0 0.0 0.0;; moveto 1.0 { -857 -503 112 110.0} 116.06 0.0 0.0 {67.1979403931515 16.490083069118597 14.295878249841468} 38.261701731824026 {0 0 0} 0 0 0 3.0 0.0 0.0;; if (antialiasDisplayFlag) { antialiasDisplay = true } else { antialiasDisplay = false } set antialiasTranslucent true; set antialiasImages true; spin off; } _setState;