# Jmol state version 11.3.54 2007-12-04 22:56; # fullName = "jmolAppletSAT[976052867248654]"; # documentBase = "http://www.proteopedia.com/wiki/index.php?title=Hemoglobin&action=edit"; # codeBase = "http://www.proteopedia.com/wiki/extensions/Jmol/"; function _setWindowState(); # height 300; # width 300; stateVersion = 1103054; backgroundColor = "[xffffff]"; axis1Color = "[xff0000]"; axis2Color = "[x008000]"; axis3Color = "[x0000ff]"; ambientPercent = 45; diffusePercent = 84; specular = true; specularPercent = 22; specularPower = 40; specularExponent = 6; statusReporting = true; end function; function _setFileState(); allowEmbeddedScripts = false; set autoBond true; set appendNew true; set appletProxy ""; set applySymmetryToBonds false; set bondRadiusMilliAngstroms 150; set bondTolerance 0.45; set defaultDirectory ""; set defaultLattice {0.0 0.0 0.0}; set defaultLoadScript ""; set loadFormat "http://www.rcsb.org/pdb/files/%FILE.pdb"; set forceAutoBond false; set minBondDistance 0.4; set percentVdwAtom 20; set smartAromatic true; reloadfile = false; if (loadedfileprev != "89d88731f0ad8ccf7ab434ae05889376"); load /*file*/"/cgi-bin/getfrozenstructure?89d88731f0ad8ccf7ab434ae05889376"; loadedfileprev = "89d88731f0ad8ccf7ab434ae05889376"; reloadfile = true; endif; end function; function _setVariableState(); set defaultanglelabel "%VALUE %UNITS"; set defaultcolorscheme "jmol"; set defaultdirectory ""; set defaultdistancelabel "%VALUE %UNITS"; set defaultdrawarrowscale 0.5; set defaultlattice {0.0 0.0 0.0}; set defaultloadscript ""; set defaulttorsionlabel "%VALUE %UNITS"; set defaulttranslucent 0.5; set allowembeddedscripts true; set allowrotateselected false; set appletproxy ""; set applysymmetrytobonds false; set autobond true; set autofps false; set axes window; set axesmode 0; set axesscale 2.0; set bondmodeor false; set bondradiusmilliangstroms 150; set bondtolerance 0.45; set cartoonrockets false; set chaincasesensitive false; set dataseparator "~~~"; set disablepopupmenu false; set displaycellparameters true; set dotsselectedonly false; set dotsurface true; set drawpicking false; set dynamicmeasurements false; set forceautobond false; set greyscalerendering false; set hbondsbackbone false; set hbondssolid false; set helppath "http://www.stolaf.edu/academics/chemapps/jmol/docs/index.htm"; set hermitelevel 0; set hidenameinpopup false; set hidenavigationpoint false; set highresolution false; set historylevel 0; set hoverdelay 0.5; set isosurfacepropertysmoothing true; set justifymeasurements false; set loadformat "http://www.rcsb.org/pdb/files/%FILE.pdb"; set measureallmodels false; set measurementlabels true; set minbonddistance 0.4; navigationcentered = false; set navigationperiodic false; set navigationspeed 5.0; set percentvdwatom 20; set pickingspinrate 10; set propertyatomnumberfield 0; set propertycolorscheme "roygb"; set propertydatafield 0; set rangeselected false; set ribbonaspectratio 16; set ribbonborder false; set rocketbarrels false; set selecthetero true; set selecthydrogen true; set sheetsmoothing 1.0; set showhiddenselectionhalos false; set showhydrogens true; set showmeasurements true; set showmultiplebonds true; set shownavigationpointalways false; set smartaromatic true; set solventprobe false; set solventproberadius 1.2; set ssbondsbackbone true; set stereodegrees 5; set strandcountformeshribbon 7; set strandcountforstrands 5; set testflag1 false; set testflag2 false; set testflag3 false; set testflag4 false; set tracealpha true; set usenumberlocalization true; set vectorscale 1.0; set vibrationperiod 1.0; set vibrationscale 1.0; set zoomenabled true; set zoomlarge true; set zshade false; #user-defined variables; if (spinflag); isspinning = true; else; isspinning = false; endif; highresolutionflag = false; scriptdelay = 0; # label defaults; select none; color label none; background label none; set labelOffset 4 4; set labelAlignment left; set labelPointer off; font label 13 SansSerif Plain; end function; function _setModelState(); calculate hbonds; select all; wireframe off; spacefill off; dots off; backbone off; trace off; ribbon off; cartoon off; strands off; rocket off; meshribbon off; isosurface off; halos off; color cpk; hbonds off; structure helix ({21:117}) # model=1.1 & (4 - 16); structure helix ({129:257}) # model=1.1 & (19 - 35); structure helix ({269:317}) # model=1.1 & (37 - 42); structure helix ({399:524}) # model=1.1 & (53 - 70); structure helix ({563:673}) # model=1.1 & (76 - 90); structure helix ({708:845}) # model=1.1 & (95 - 112); structure helix ({893:1056}) # model=1.1 & (119 - 140); structure helix ({1101:1199}) # model=1.1 & (5 - 17); structure helix ({1215:1320}) # model=1.1 & (20 - 34); structure helix ({1333:1391}) # model=1.1 & (36 - 41); structure helix ({1462:1496}) # model=1.1 & (51 - 55); structure helix ({1509:1638}) # model=1.1 & (58 - 75); structure helix ({1678:1775}) # model=1.1 & (81 - 93); structure helix ({1826:1967}) # model=1.1 & (100 - 117); structure helix ({2019:2159}) # model=1.1 & (124 - 143); select ({1072 1079 1089 1097 1099 1104 1111 1115 1116 1120 1124 1125 1129 1138 1140 1144 1149 1156 1158 1163 1168 1176 1190 1194 1203 1210 1213 1218 1225 1228 1229 1233 1237 1238 1242 1249 1253 1257 1261 1262 1266 1271 1279 1283 1294 1302 1310 1317 1324 1332 1336 1343 1357 1359 1364 1368 1373 1384 1395 1406 1410 1411 1415 1417 1421 1432 1436 1439 1440 1444 1452 1454 1458 1460 1465 1472 1475 1476 1480 1485 1492 1500 1504 1507 1512 1519 1528 1535 1544 1549 1559 1563 1572 1581 1588 1596 1600 1605 1616 1618 1622 1625 1626 1630 1634 1642 1647 1657 1665 1668 1669 1673 1676 1681 1689 1698 1702 1704 1709 1720 1725 1727 1732 1740 1742 1746 1750 1751 1755 1763 1773 1779 1782 1783 1787 1796 1804 1814 1821 1824 1825 1829 1836 1840 1841 1845 1848 1853 1864 1875 1883 1891 1895 1898 1903 1910 1918 1925 1931 1938 1946 1951 1961 1971 1982 1986 1995 1999 2000 2004 2015 2017 2022 2029 2036 2043 2047 2052 2057 2062 2070 2074 2078 2083 2092 2099 2106 2111 2115 2122 2127 2130 2135 2140 2148 2153 2163 2172 2180 2184 2191 2242 2394 2395}); Spacefill 1.7; select ({1069 1076 1082 1085 1086 1094 1101 1108 1117 1126 1134 1135 1141 1146 1153 1160 1165 1173 1181 1187 1191 1199 1200 1207 1214 1215 1222 1230 1239 1246 1250 1254 1263 1268 1276 1280 1287 1289:1291 1299 1307 1314 1321 1333 1340 1348 1354 1361 1369 1370 1377 1379:1381 1392 1403 1412 1418 1429 1433 1441 1449 1455 1462 1469 1477 1482 1489 1497 1501 1508 1509 1516 1524 1525 1532 1540 1541 1546 1552 1555 1556 1560 1568 1569 1577 1578 1585 1593 1597 1602 1613 1619 1627 1631 1639 1644 1650 1653 1654 1662 1670 1677 1678 1686 1694 1695 1699 1706 1717 1722 1729 1737 1743 1752 1760 1766 1769 1770 1776 1784 1792 1793 1801 1807 1810 1811 1818 1826 1833 1842 1849 1850 1861 1868 1870:1872 1880 1888 1892 1899 1900 1907 1915 1922 1928 1935 1943 1948 1954 1957 1958 1964 1967 1968 1979 1983 1991 1992 2001 2012 2019 2026 2033 2040 2048 2049 2054 2059 2071 2079 2080 2088 2089 2096 2103 2108 2112 2119 2124 2131 2132 2137 2145 2150 2156 2159 2160 2168 2169 2181 2187 2190}); Spacefill 1.85; select ({0:1068 2192:2241 2243:2393}); Spacefill 0.0; select ({1070 1071 1073:1075 1077 1078 1080 1081 1083 1084 1087 1088 1090:1093 1095 1096 1098 1100 1102 1103 1105:1107 1109 1110 1112:1114 1118 1119 1121:1123 1127 1128 1130:1133 1136 1137 1139 1142 1143 1145 1147 1148 1150:1152 1154 1155 1157 1159 1161 1162 1164 1166 1167 1169:1172 1174 1175 1177:1180 1182:1186 1188 1189 1192 1193 1195:1198 1201 1202 1204:1206 1208 1209 1211 1212 1216 1217 1219:1221 1223 1224 1226 1227 1231 1232 1234:1236 1240 1241 1243:1245 1247 1248 1251 1252 1255 1256 1258:1260 1264 1265 1267 1269 1270 1272:1275 1277 1278 1281 1282 1284:1286 1288 1292 1293 1295:1298 1300 1301 1303:1306 1308 1309 1311:1313 1315 1316 1318:1320 1322 1323 1325:1331 1334 1335 1337:1339 1341 1342 1344:1347 1349:1353 1355 1356 1358 1360 1362 1363 1365:1367 1371 1372 1374:1376 1378 1382 1383 1385:1391 1393 1394 1396:1402 1404 1405 1407:1409 1413 1414 1416 1419 1420 1422:1428 1430 1431 1434 1435 1437 1438 1442 1443 1445:1448 1450 1451 1453 1456 1457 1459 1461 1463 1464 1466:1468 1470 1471 1473 1474 1478 1479 1481 1483 1484 1486:1488 1490 1491 1493 1494 1496 1498 1499 1502 1503 1505 1506 1510 1511 1513:1515 1517 1518 1520:1523 1526 1527 1529:1531 1533 1534 1536:1539 1542 1543 1545 1547 1548 1550 1551 1553 1554 1557 1558 1561 1562 1564:1567 1570 1571 1573:1576 1579 1580 1582:1584 1586 1587 1589:1592 1594 1595 1598 1599 1601 1603 1604 1606:1612 1614 1615 1617 1620 1621 1623 1624 1628 1629 1632 1633 1635:1638 1640 1641 1643 1645 1646 1648 1649 1651 1652 1655 1656 1658:1661 1663 1664 1666 1667 1671 1672 1674 1675 1679 1680 1682:1685 1687 1688 1690:1693 1696 1697 1700 1701 1703 1705 1707 1708 1710:1716 1718 1719 1721 1723 1724 1726 1728 1730 1731 1733:1736 1738 1739 1741 1744 1745 1747:1749 1753 1754 1756:1759 1761 1762 1764 1765 1767 1768 1771 1772 1774 1777 1778 1780 1781 1785 1786 1788:1791 1794 1795 1797:1800 1802 1803 1805 1806 1808 1809 1812 1813 1815:1817 1819 1820 1822 1823 1827 1828 1830:1832 1834 1835 1837:1839 1843 1844 1846 1847 1851 1852 1854:1860 1862 1863 1865:1867 1869 1873 1874 1876:1879 1881 1882 1884:1887 1889 1890 1893 1894 1896 1897 1901 1902 1904:1906 1908 1909 1911:1914 1916 1917 1919:1921 1923 1924 1926 1929 1930 1932:1934 1936 1937 1939:1942 1944 1945 1947 1949 1950 1952 1953 1955 1956 1959 1960 1962 1963 1965 1966 1969 1970 1972:1978 1980 1981 1984 1985 1987:1990 1993 1994 1996:1998 2002 2003 2005:2011 2013 2014 2016 2018 2020 2021 2023:2025 2027 2028 2030:2032 2034 2035 2037:2039 2041 2042 2044:2046 2050 2051 2053 2055 2056 2058 2060 2061 2063:2069 2072 2073 2075:2077 2081 2082 2084:2087 2090 2091 2093:2095 2097 2098 2100:2102 2104 2105 2107 2109 2110 2113 2114 2116:2118 2120 2121 2123 2125 2126 2128 2129 2133 2134 2136 2138 2139 2141:2144 2146 2147 2149 2151 2152 2154 2155 2157 2158 2161 2162 2164:2167 2170 2171 2173:2179 2182 2183 2185 2186 2188 2189}); Spacefill 1.95; select ({1495 1775 1927}); Spacefill 2.0; select ({0:2191 2197:2241}); color atoms opaque [x00ff00]; select BONDS ({60 107}); wireframe 0.15; select BONDS ({61:106}); wireframe 0.3; select BONDS ({0:59 108:2571}); wireframe 0.0; measures delete; set measures nanometers; font measures 15 SansSerif Plain; select measures ({null}); boundBox off; unitcell off; frank on; font frank 16 SansSerif Bold; end function; function _setPerspectiveState(); if (spinflag); refreshing = true;refresh; spin on; else; spin off; endif; if (reloadfile); set perspectiveModel 11; endif; set scaleAngstromsPerInch 0.0; set perspectiveDepth true; set visualRange 5.0; set cameraDepth 3.0; #boundbox corners {-9.496999 -27.96 -28.855999} {34.908 27.994999 28.510998} # volume = 142538.72; if (reloadfile); center {8.969 -9.033999 14.806}; endif; slab 100;depth 0; set spinX 0; set spinY 5; set spinZ 0; set spinFps 30; end function; function _setSelectionState(); select ({2285:2393}); hide selected; select ({2285:2393}); set hideNotSelected false; end function function _setState(); zoomto 1.0 100; delay 0.5; select all; labels off; measurements off; refreshing = false; _setWindowState; _setFileState; _setVariableState; _setModelState; _setPerspectiveState; _setSelectionState; refreshing = true; delay 1.0; moveto 3.0 { -366 121 -923 78.95} 100.0 0.0 0.0 {8.969 -9.033999 14.806} 32.911415 {0.0 0.0 0.0} -1.478129 -14.780955 50.0;; moveto 3.0 { -366 121 -923 78.95} 177.58 0.0 0.0 {8.969 -9.033999 14.806} 32.911415 {0.0 0.0 0.0} -1.478129 -14.780955 50.0;; antialiasDisplay = false; antialiasTranslucent = true; antialiasImages = true; end function; _setState;