exit;
# Jmol state version 11.8.9  2009-10-28 17:43;
  # fullName = "jmolAppletSAT__5441566240042448__";
  # documentBase = "http://proteopedia.org/wiki/index.php?title=User:Eric_Martz/Molecular_Playground/Authoring&action=edit&section=3";
  # codeBase = "http://proteopedia.org/wiki/extensions/Jmol/";


function _setWindowState() {
# height 300;
# width 300;
  stateVersion = 1108009;
  backgroundColor = "[x000000]";
  axis1Color = "[xff0000]";
  axis2Color = "[x008000]";
  axis3Color = "[x0000ff]";
  ambientPercent = 45;
  diffusePercent = 84;
  specular = true;
  specularPercent = 22;
  specularPower = 40;
  specularExponent = 6;
  statusReporting  = true;
}

function _setFileState() {

  set allowEmbeddedScripts false;
  set autoBond true;
  set appendNew true;
  set appletProxy "";
  set applySymmetryToBonds false;
  set bondRadiusMilliAngstroms 150;
  set bondTolerance 0.45;
  set defaultLattice {0.0 0.0 0.0};
  set defaultLoadScript "";
  set defaultVDW Jmol;
  set forceAutoBond false;
  set loadFormat "http://www.rcsb.org/pdb/files/%FILE.pdb";
  set minBondDistance 0.4;
  set pdbSequential false;
  set pdbGetHeader false;
  set percentVdwAtom 20;
  set smartAromatic true;
  reloadfile = false;
  if (loadedfileprev != "fb9e0ad4779a903c97ca42d636ab1fdc");
    load /*file*/"/cgi-bin/getfrozenstructure?fb9e0ad4779a903c97ca42d636ab1fdc";
    loadedfileprev = "fb9e0ad4779a903c97ca42d636ab1fdc";
    reloadfile = true;
  endif;

}

function _setVariableState() {

   set defaultanglelabel "%VALUE %UNITS";
   set defaultcolorscheme "jmol";
   set defaultdistancelabel "%VALUE %UNITS";
   set defaultdrawarrowscale 0.5;
   set defaultlattice {0.0 0.0 0.0};
   set defaultloadscript "";
   set defaulttorsionlabel "%VALUE %UNITS";
   set defaulttranslucent 0.5;
   set defaultvdw "Jmol";
  set allowembeddedscripts true;
  set allowkeystrokes false;
  set allowrotateselected false;
  set appletproxy "";
  set applysymmetrytobonds false;
  set atompicking true;
  set atomtypes "";
  set autobond true;
  set autofps false;
  set autoloadorientation false;
  set axes window;
  set axesmode 0;
  set axesscale 2.0;
  set bondmodeor false;
  set bondpicking false;
  set bondradiusmilliangstroms 150;
  set bondtolerance 0.45;
  set cartoonrockets false;
  set chaincasesensitive false;
  set dataseparator "~~~";
  set delaymaximumms 0;
  set dipolescale 1.0;
  set disablepopupmenu false;
  set displaycellparameters true;
  set dotdensity 3;
  set dotsselectedonly false;
  set dotsurface true;
  set dragselected false;
  set drawhover false;
  set drawpicking false;
  set dynamicmeasurements false;
  set ellipsoidarcs false;
  set ellipsoidaxes false;
  set ellipsoidaxisdiameter 0.02;
  set ellipsoidball true;
  set ellipsoiddotcount 200;
  set ellipsoiddots false;
  set ellipsoidfill false;
  set fontcaching true;
  set forceautobond false;
  set greyscalerendering false;
  set hbondsangleminimum 90.0;
  set hbondsbackbone false;
  set hbondsdistancemaximum 3.25;
  set hbondssolid false;
  set helixstep 1;
  set helppath "http://www.stolaf.edu/academics/chemapps/jmol/docs/index.htm";
  set hermitelevel 0;
  set hidenameinpopup false;
  set hidenavigationpoint false;
  set highresolution false;
  set historylevel 0;
  set hoverdelay 0.5;
  set imagestate true;
  set isosurfacepropertysmoothing true;
  set justifymeasurements false;
  set loadatomdatatolerance 0.01;
  set loadformat "http://www.rcsb.org/pdb/files/%FILE.pdb";
  set measureallmodels false;
  set measurementlabels true;
  set messagestylechime false;
  set minbonddistance 0.4;
  set navigatesurface false;
  set navigationperiodic false;
  set navigationspeed 5.0;
  set pdbgetheader false;
  set pdbsequential false;
  set percentvdwatom 20;
  set pickingspinrate 10;
  set picklabel "";
  set pointgroupdistancetolerance 0.2;
  set pointgrouplineartolerance 8.0;
  set propertyatomnumbercolumncount 0;
  set propertyatomnumberfield 0;
  set propertycolorscheme "roygb";
  set propertydatacolumncount 0;
  set propertydatafield 0;
  set quaternionframe "c";
  set rangeselected false;
  set ribbonaspectratio 16;
  set ribbonborder false;
  set rocketbarrels false;
  set selectallmodels true;
  set selecthetero true;
  set selecthydrogen true;
  set sheetsmoothing 1.0;
  set showhiddenselectionhalos false;
  set showhydrogens true;
  set showkeystrokes true;
  set showmeasurements true;
  set showmultiplebonds true;
  set shownavigationpointalways false;
  set smartaromatic true;
  set solventprobe false;
  set solventproberadius 1.2;
  set ssbondsbackbone true;
  set stereodegrees -5.0;
  set strandcountformeshribbon 7;
  set strandcountforstrands 5;
  set testflag1 false;
  set testflag2 false;
  set testflag3 false;
  set testflag4 false;
  set tracealpha true;
  set useminimizationthread true;
  set usenumberlocalization true;
  set vectorscale 1.0;
  set vibrationperiod 1.0;
  set vibrationscale 1.0;
  set wireframerotation false;
  set zoomlarge false;
  set zshade false;

#user-defined variables; 
  @site_1 ({260:279 522:540 564:574 737:750 1083:1093 1110:1118 1241:1246 1484:1501 1599:1609 1618:1625 1988:1999 2176:2186 2448:2459 3063 3081 3089 3113 3150});
  @site_ac1 ({1610:1617 1650:1653 1857:1864 1979:1982 1988:1999 3065});
  @site_ac2 ({260:279 522:540 564:574 737:750 1083:1093 1110:1118 1241:1246 1484:1501 1599:1609 1618:1625 1988:1999 2176:2186 2448:2459 3063 3081 3089 3113 3150});
  @~anomalous_atoms ({});
  @~backbone_invisible ({});
  @~hydroxy_unchained_nucs ({});
  @~nobackbone_aas ({});
  @~nophosphorus_nucs ({});
  @~protein ({0:2963});
  @~unbondable_aas ({});
  @~unchained_aas ({});
  @~unchained_nucs ({});
  @~zmr_contacts ({260:270 522:540 564:574 737:750 1484:1492 2176:2186 2448:2459 3063 3081 3089 3113 3150});
  


  
  site_ac1 = ["[ASP]293:A", "[GLY]297:A", "[ASP]324:A", "[GLY]345^A:A", "[TYR]347:A", "[HOH]547:A"];
  site_ac2 = ["[ARG]118:A", "[GLU]119:A", "[ASP]151:A", "[ARG]152:A", "[ARG]156:A", "[TRP]178:A", "[ARG]224:A", "[GLU]227:A", "[SER]246:A", "[GLU]276:A", "[GLU]277:A", "[ARG]292:A", "[ASN]294:A", "[TYR]347:A", "[ARG]371:A", "[TYR]406:A", "[HOH]545:A", "[HOH]563:A", "[HOH]571:A", "[HOH]595:A", "[HOH]632:A"];
  site_list = ["site_AC1", "site_AC2"];
  


# label defaults;
  select none;
  color label none;
  background label none;
  set labelOffset 4 4;
  set labelAlignment left;
  set labelPointer off;
  font label 13.0 SansSerif Plain;

}

function _setModelState() {
  calculate hbonds;
  select all;
  wireframe off;
  spacefill off;
  dots off;
  backbone off;
  trace off;
  ribbon off;
  cartoon off;
  strands off;
  rocket off;
  meshribbon off;
  isosurface off;
  halos off;
  color cpk;
  hbonds off;

  select ({260:270 522:540 564:574 737:750 1484:1492 2176:2186 2448:2459});
  color atoms translucent 96 cpk;
  select ({0:259 271:521 541:563 575:736 751:1459 1472:1483 1493:2175 2187:2447 2460:2963});
  color atoms translucent 224 chain;
  select ({0:3062 3064:3080 3082:3088 3090:3112 3114:3149 3151:3174});
  Spacefill 0.0;
  select ({3063 3081 3089 3113 3150});
  Spacefill 0.35;
  select BONDS ({6 7 9:11 13:3078});
  color bonds opaque none;
  select BONDS ({0:5 8 12});
  color bonds opaque [xffff30];
  select BONDS ({14:36 1573:1580 1582:1585});
  wireframe 0.52;
  select BONDS ({558:569 841:850 1551:1556 1558 1559 2309:2323 2491:2498 2500 2501 2527:2534 2536:2545 2804:2813});
  wireframe 0.25;
  select BONDS ({0:13 37:557 570:840 851:1550 1557 1560:1572 1581 1586:2308 2324:2490 2499 2502:2526 2535 2546:2803 2814:3078});
  wireframe 0.0;

  select ({1464});
  label "Tyr274";
  select ({2977});
  label "Relenza";
  select ({1464 2977});
  font label 24.0 SansSerif Plain;
  set labelPointer on;
  color label [x000000];
  set labelOffset 4 4;
  measures delete;
  select *; set measures nanometers;
  font measures 15.0 SansSerif Plain;
  select measures ({null});

  Backbone ({0:1723 1732:1924 1929:1934 1941:1958 1965:2700 2710:2955});
  Backbone on;
  Backbone ({1724:1731 1925:1928 1935:1940 1959:1964 2701:2709 2956:2963});
  Backbone 0.0;
  select ({0:2963});
  color Backbone opaque [x00c000];

  select ({0:2963});
  color Trace opaque [xffffff];

  set echo off;

  boundBox off;

  unitcell off;

  hover "%n %r, Chain=%c, Element=%e";

  frank on;
  font frank 16.0 SansSerif Bold;
  set fontScaling false;

}

function _setPerspectiveState() {
  if (reloadfile);
    set perspectiveModel 11;
  endif;
  set scaleAngstromsPerInch 0.0;
  set perspectiveDepth true;
  set visualRange 5.0;
  set cameraDepth 3.0;
  #boundbox corners {-51.645 -74.72 -10.723999} {1.9239998 -22.659004 43.827} # volume = 152134.84;
  if (reloadfile);
    center {-26.85473 -49.576805 16.899216};
  endif;
  moveto 0.0 { 115 936 -333 121.81} 197.37 0.0 0.0 {-26.85473 -49.576805 16.899216} 35.41428 {0.0 0.0 0.0} -8.31859 -100.73692 0.0;;
  slab 100;depth 0;
  set spinX = 0; set spinY = 5; set spinZ = 0;spinFps = 30;
}

function _setSelectionState() {
  select ({0:3174});
  set hideNotSelected false;
}

function _setState() {
  select all;
  labels off;
  measurements off;
  set refreshing false;
  _setWindowState;
  _setFileState;
  _setVariableState;
  _setModelState;
  _setPerspectiveState;
  _setSelectionState;
  set refreshing true;
  if (antialiasDisplayFlag);
    antialiasDisplay = true;
  else;
    antialiasDisplay = false;
  endif;
  set antialiasTranslucent true;
  set antialiasImages true;
  spin on;
}

_setState;