exit; # Jmol state version 11.8.9 2009-10-28 17:43; # fullName = "jmolAppletSAT__457412478514016__"; # documentBase = "http://proteopedia.org/wiki/index.php?title=User:Eric_Martz/Sandbox_10&action=edit"; # codeBase = "http://proteopedia.org/wiki/extensions/Jmol/"; function _setWindowState() { # height 300; # width 300; stateVersion = 1108009; backgroundColor = "[xffffff]"; axis1Color = "[xff0000]"; axis2Color = "[x008000]"; axis3Color = "[x0000ff]"; ambientPercent = 45; diffusePercent = 84; specular = true; specularPercent = 22; specularPower = 40; specularExponent = 6; statusReporting = true; } function _setFileState() { set allowEmbeddedScripts false; set autoBond true; set appendNew true; set appletProxy ""; set applySymmetryToBonds false; set bondRadiusMilliAngstroms 150; set bondTolerance 0.45; set defaultLattice {0.0 0.0 0.0}; set defaultLoadScript ""; set defaultVDW Jmol; set forceAutoBond false; set loadFormat "http://www.rcsb.org/pdb/files/%FILE.pdb"; set minBondDistance 0.4; set pdbSequential false; set pdbGetHeader false; set percentVdwAtom 20; set smartAromatic true; reloadfile = false; if (loadedfileprev != "93dc2284a2db511504e2792abce3792f"); load /*file*/"/cgi-bin/getfrozenstructure?93dc2284a2db511504e2792abce3792f"; loadedfileprev = "93dc2284a2db511504e2792abce3792f"; reloadfile = true; endif; } function _setVariableState() { set defaultanglelabel "%VALUE %UNITS"; set defaultcolorscheme "Jmol"; set defaultdistancelabel "%VALUE %UNITS"; set defaultdrawarrowscale 0.5; set defaultlattice "{0 0 0}"; set defaultloadscript ""; set defaulttorsionlabel "%VALUE %UNITS"; set defaulttranslucent 0.5; set defaultvdw "Jmol"; set allowembeddedscripts true; set allowkeystrokes false; set allowrotateselected false; set appletproxy ""; set applysymmetrytobonds false; set atompicking true; set atomtypes ""; set autobond true; set autofps false; set autoloadorientation false; set axes window; set axesmode 0; set axesscale 2.0; set bondmodeor false; set bondpicking false; set bondradiusmilliangstroms 150; set bondtolerance 0.45; set cartoonrockets false; set chaincasesensitive false; set dataseparator "~~~"; set delaymaximumms 0; set dipolescale 1.0; set disablepopupmenu false; set displaycellparameters true; set dotdensity 3; set dotsselectedonly false; set dotsurface true; set dragselected false; set drawhover false; set drawpicking false; set dynamicmeasurements false; set ellipsoidarcs false; set ellipsoidaxes false; set ellipsoidaxisdiameter 0.02; set ellipsoidball true; set ellipsoiddotcount 200; set ellipsoiddots false; set ellipsoidfill false; set fontcaching true; set forceautobond false; set greyscalerendering false; set hbondsangleminimum 90.0; set hbondsbackbone false; set hbondsdistancemaximum 3.25; set hbondssolid false; set helixstep 1; set helppath "http://chemapps.stolaf.edu/jmol/docs/index.htm"; set hermitelevel 0; set hidenameinpopup false; set hidenavigationpoint false; set highresolution false; set historylevel 0; set hoverdelay 0.5; set imagestate true; set isosurfacepropertysmoothing true; set justifymeasurements false; set loadatomdatatolerance 0.01; set loadformat "http://www.rcsb.org/pdb/files/%FILE.pdb"; set measureallmodels false; set measurementlabels true; set messagestylechime false; set minbonddistance 0.4; set navigatesurface false; set navigationperiodic false; set navigationspeed 5.0; set pdbgetheader false; set pdbsequential false; set percentvdwatom 20; set pickingspinrate 10; set picklabel ""; set pointgroupdistancetolerance 0.2; set pointgrouplineartolerance 8.0; set propertyatomnumbercolumncount 0; set propertyatomnumberfield 0; set propertycolorscheme "roygb"; set propertydatacolumncount 0; set propertydatafield 0; set quaternionframe "p"; set rangeselected false; set ribbonaspectratio 16; set ribbonborder false; set rocketbarrels false; set selectallmodels true; set selecthetero true; set selecthydrogen true; set sheetsmoothing 1.0; set showhiddenselectionhalos false; set showhydrogens true; set showkeystrokes true; set showmeasurements true; set showmultiplebonds true; set shownavigationpointalways false; set smartaromatic true; set solventprobe false; set solventproberadius 1.2; set ssbondsbackbone true; set stereodegrees -5; set strandcountformeshribbon 7; set strandcountforstrands 5; set testflag1 false; set testflag2 false; set testflag3 false; set testflag4 false; set tracealpha true; set useminimizationthread true; set usenumberlocalization true; set vectorscale 1.0; set vibrationperiod 1.0; set vibrationscale 1.0; set wireframerotation false; set zoomlarge true; set zshade false; #user-defined variables; # --no global user variables defined--; # label defaults; select none; color label none; background label none; set labelOffset 4 4; set labelAlignment left; set labelPointer off; font label 13.0 SansSerif Plain; } function _setModelState() { calculate hbonds; select all; wireframe off; spacefill off; dots off; backbone off; trace off; ribbon off; cartoon off; strands off; rocket off; meshribbon off; isosurface off; halos off; color cpk; hbonds off; structure sheet ({0:112}) # model=1.1 & (1 - 6); select ({133:135}); Spacefill 0.425; select ({0:132}); Spacefill 0.0; select BONDS ({0:133}); wireframe 0.12; measures delete; measure ({0}) ({10}) ({133}); # angle 126.39435 126.4 ° [LEU]1:A.N #1 [LEU]1:A.H3 #11 [HOH]8:A.O #135; measure ({0}) ({10}) ({135}); # angle 154.86076 154.9 ° [LEU]1:A.N #1 [LEU]1:A.H3 #11 [HOH]10:A.O #137; select *; set measures angstroms; font measures 15.0 SansSerif Plain; select measures ({null}); set echo off; boundBox off; unitcell off; hover "%n %r, Chain=%c, Element=%e"; frank on; font frank 16.0 SansSerif Bold; set fontScaling false; } function _setPerspectiveState() { if (reloadfile); set perspectiveModel 11; endif; set scaleAngstromsPerInch 0.0; set perspectiveDepth true; set visualRange 5.0; set cameraDepth 3.0; boundbox corners {0.27400017 0.40199995 -0.7049999} {24.47 4.275 11.317} # volume = 1126.595; if (reloadfile); center {1.4039999 2.323 2.704}; endif; slab 53;depth 47;slab on; set spinX = 0; set spinY = 5; set spinZ = 0;spinFps = 30; } function _setSelectionState() { select ({135}); set hideNotSelected false; } function _setState() { zoomto 1.0 100; delay 0.5; select all; labels off; measurements off; set refreshing false; _setWindowState; _setFileState; _setVariableState; _setModelState; _setPerspectiveState; _setSelectionState; set refreshing true; #update color key ppdiaSuffix = getProperty("appletInfo","htmlName"); ppdiaSuffix = ppdiaSuffix[1][ppdiaSuffix.find('__')-1].replace('jmolApplet',''); ppdiaColorKey = ""; ppdiaJvsptCmd = "changeColorKeyDiv('" + ppdiaColorKey + "','" + ppdiaSuffix + "');"; javascript @ppdiaJvsptCmd; delay 1.0; moveto 1.0 { -610 286 -739 177.68} 100.0 0.0 0.0 {1.4039999 2.323 2.704} 24.805738 {0.0 0.0 0.0} -19.042322 -49.34487 0.0;; moveto 1.0 { -610 286 -739 177.68} 707.57 0.0 0.0 {1.4039999 2.323 2.704} 24.805738 {0.0 0.0 0.0} -19.042322 -49.34487 0.0;; if (antialiasDisplayFlag); antialiasDisplay = true; else; antialiasDisplay = false; endif; set antialiasTranslucent true; set antialiasImages true; spin off; } _setState;