FirstGlance/Index

A list of pages and resources related to FirstGlance in Jmol:

Proteopedia Pages

FirstGlance in Jmol - Overview of the software package and its integration into Proteopedia.
FirstGlance in Jmol Literature Citations lists some of the recent scientific journal publications where it was utilized and cited.
FirstGlance/Virus Capsids and Other Large Assemblies New capabilities in August, 2022.

AlphaFold: How to predict structures has a section on the advantages of visualization of predicted structures in FirstGlance.
AlphaFold: FirstGlance/How to get average pLDDT from AlphaFold models.
AlphaFold3: Converting AlphaFold3 CIF models to PDB for use in FirstGlance.
Biological Unit tells how to visualize the biological unit in FirstGlance.
Cation-pi interactions mentions that FirstGlance has a tool to display these easily.
ConSurf Quick Analysis Procedure mentions using FirstGlance to visualize ConSurf results.
Disulfide bond mentions FirstGlance's tool that highlights these and quantitates all sulfurs and seleniums.
Electron density maps mentions how easy it is to see them in FirstGlance, and provides animated illustrations from FirstGlance.
Electrostatic potential maps
FirstGlance/Evaluating Protein Crosslinks
FirstGlance/How To Measure A Virus Capsid
FirstGlance/Visualizing Conservation: Easy ways to see ConSurf colors for residues of interest.
Free R tells how FirstGlance helps to interpret free R.

Help:Copying FirstGlance Scenes into Proteopedia
Hydrogen bonds describes the Contacts & Non-Covalent Interactions tool in FirstGlance.
How to see conserved regions includes a section on FirstGlance.
Interpreting ConSurf Results discusses advantages of using FirstGlance.
Practical Guide to Homology Modeling a section on visualizing predicted structures in FirstGlance.
Protein crosslinks: FirstGlance automatically detects and alerts you to six unusual types.
Salt bridges mentions that FirstGlance has a tool to display these easily.
Introduction to Structural Bioinformatics: Syllabi and assessment tools based heavily on use of FirstGlance by students.
Temperature value mentions the use of FirstGlance to color by temperature, and to list missing residues and incomplete sidechains.

FirstGlance.Jmol.Org: the software package itself.
What Is FirstGlance in Jmol: an overview of capabilities.
Design of FirstGlance in Jmol, and its Forerunners
tinyurl.com/firstglance1: YouTube illustrated talk introducing FirstGlance and its design goals.
tinyurl.com/movingmolecules: Examples (in Google Slides) of animations easily created in FirstGlance.
Index to FirstGlance: Where to find specific tools within FirstGlance, and how to do specific tasks using FirstGlance.