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Function
Nuclear transcription factor Y (NFY) binds to a CCAAT sequence of gene promoters. NFY contains 3 subunits while subunit α binds the promoter box sequence[1]. See details in NF-Y Transcription Factor.
Relevance
NFY is a regulatory factor for many genes which are overexpressed in many kinds of cancer[2].
Structural highlights
Human nuclear transcription factor Y subunit α, subunit β, subunit γ with HSP70 promoter fragment (PDB code 4awl). The interaction of NFY with the promoter CCAAT sequence, involves an insertion of an NFY helix into the minor groove of the DNA[3].
- ↑ Maity SN, de Crombrugghe B. Role of the CCAAT-binding protein CBF/NF-Y in transcription. Trends Biochem Sci. 1998 May;23(5):174-8. PMID:9612081
- ↑ Bargou RC, Jurchott K, Wagener C, Bergmann S, Metzner S, Bommert K, Mapara MY, Winzer KJ, Dietel M, Dorken B, Royer HD. Nuclear localization and increased levels of transcription factor YB-1 in primary human breast cancers are associated with intrinsic MDR1 gene expression. Nat Med. 1997 Apr;3(4):447-50. PMID:9095180
- ↑ Nardini M, Gnesutta N, Donati G, Gatta R, Forni C, Fossati A, Vonrhein C, Moras D, Romier C, Bolognesi M, Mantovani R. Sequence-Specific Transcription Factor NF-Y Displays Histone-like DNA Binding and H2B-like Ubiquitination. Cell. 2013 Jan 17;152(1-2):132-43. doi: 10.1016/j.cell.2012.11.047. PMID:23332751 doi:https://dx.doi.org/10.1016/j.cell.2012.11.047
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3D Structures of nuclear transcription factor Y
Updated on 26-March-2026
NF-Y Transcription Factor, 4awl, 7ah8 – hNFY beta+gamma subunits - human
4awl – hNFY alpha+ beta+gamma subunits + promoter DNA
6qmp, 6qmq, 6qms, 8qu2, 8qu3, 8qu4 – hNFY alpha peptide+beta+gamma subunits
5g49 – AtNFY beta6+gamma3 subunits – Arabidopsis thaliana
6r0m, 6r0n – AtNFY beta2+gamma3 subunits histone-fold domain
6r2v – AtNFY alpha6+ beta2+gamma3 subunits + DNA
7cvq – AtNFY beta2+gamma3 subunits + DNA
7cvo – AtNFY beta2+gamma3 + gamma4 subunits + DNA
7c9p – rNFY beta11+gamma2 subunits – rice
7c9o – rNFY beta11+gamma2 subunits + zinc finger protein HD1 + DNA
6r0l – rNFY gamma7 subunit + OsGhd8
References
proteopedia link