User:Eric Martz/Sandbox 17

PNGJ scene and caption tests

spinqualitylabelsall models Show:Asymmetric Unit Biological Assembly Drag the structure with the mouse to rotate   Export Animated Image   Print3D This page created 2020/12/16 after Jaim made changes to enable caption editing. 1. Here is a new PNGJ scene with a caption. This loads Image:6zgi-cavities.pngj When scene 1 was re-loaded, the caption DID APPEAR for editing, but in JSmol, the isosurfaces from the PNGJ file were not displayed. 2. Here I have re-loaded scene 1, edited ONLY the caption, and saved. As in the SAT, the isosurfaces in the PNGJ file have disappeared. But the edited caption appears correctly. 2020-12-17: 3. Scene 1 saved after editing only the CAPTION, after further fixes by Jaim (2020-12-17). BOTH SCENE AND CAPTION ARE CORRECT. HURRAY! Scenes 4 and 5 use Image:6zgi-membrane-proximal-cavity-jmol-cr2.5.pngj. 4. New PNGJ with membrane-proximal cavity in 4 colors. These isosurfaces take several minutes to calculate, but when saved as JVXL files, then loaded from the files and cached, and that saved into a new PNGJ file, the results appear in about one second! 2020-12-19: 5. This green link runs a JSmol script, loading the PNGJ file, and writing the caption directly. I have not been able to devise a method to color text in the caption. Anything with < or > creates an XML error (page cannot be saved). Using e.g. &lt; can be saved, but confuses JSmol which expects a new command after the ';'. Proteopedia's wiki lacks Template:Font_color: red text?. 6. I tried an indirect method to color caption text. This page saves in Proteopedia, and the JSmol variable captext prints correctly. I can't tell if my assignment to the Javascript variable captext is working. The caption does not display. There are no JSmol errors. There are Javascript warnings, but not errors. 2020-12-21: 7. Re-try of the 4-isosurface PNGJ (Image:6zgi-membrane-proximal-cavity-jmol-cr2.5.pngj). WORKS. 8. Same scene as 7 with caption edited to include colored text. WORKS WITH COLORED CAPTION. COLORS done with span classes. 9. Same as 8 but with yellow caption text done as a style span. DOES NOT WORK. 10. Same as 9 but with non-breaking space codes removed. STILL DOES NOT WORK. Evidently style spans are not supported in captions. 11. Yellow background text changed to a class span. WORKS. PDB (not PNGJ) scenes 12. A simple scene (no isosurfaces) for testing caption text coloring. WORKS. FONT COLOR TAGS CAN BE USED IN SCENES NOT INVOLVING PNGJ FILES, BUT BE SURE TO DO BOLD/ITALICS WITH HTML TAGS NOT WIKI MARKUP! 13: Test using a color scheme template for Oxygen. FAILS. 14: Single color template method: {{Font color|red|red text}}. DOES NOT WORK. 15: Span style method. FAILS PREVENTING SCENE OR CAPTION FROM LOADING AT ALL.

See Also

• File:Colortext.spt
• Proteopedia:DIY:Templates

Proteopedia Page Contributors and Editors (what is this?)

Eric Martz