User:Eric Martz/Virus capsid visualization resources
From Proteopedia
(Redirected from User:Eric Martz/Virus capsid resources)
Virus Capsids in Proteopedia
Articles marked 
have 300 or more words, 4 or more green links and 4 or more literature citations. 
marks honorable mentions that are well developed but do not meet the previous arbitrary criteria.
- Adeno-Associated Virus 3D printed models
- Canine parvovirus capsid
- Cowpea Chlorotic Mottle Virus capsid
- Ebola: Structure of the Ebola virus nucleoprotein - RNA complex
Gag of HIV-1- Gag polyprotein, part of the capsid of HIV and other retroviruses.
- Human papilloma virus: HPV major capsid protein L1, basis for the Gardasil 9 vaccine.
- Rhinovirus, human
- Norovirus oligosaccaride binding
Polio virus capsid- SV40 Capsid Simplified overlays the capsid with its geometric icosahedron.
- Tobacco Mosaic Virus
- Viral capsids ***
- Virus coat protein
- Zika virus -- Art
- Zika virus capsid protein
*** Needs further examination.
Lists of Links
- HIV: Human Immunodeficiency Virus has a list of links to more than 20 related articles in Proteopedia.
- Virus coat proteins 3D structures
External Virus Capsid Resources
- Molecule of the Month at the RCSB PDB offers:
- 200 Icosahedral Viruses from the PDB offers a poster with virus capsids arranged by size, and colored by the number of protein chains/capsid (60 to 8,280). The poster is available with or without PDB codes.
- Adenovirus Capsid has long fibers extending from its vertices.
- HIV Capsid.
- HPV: Human Papillomavirus and Vaccines.
- Paper models of viruses can be constructed using instructions provided.
- Quasisymmetry in Icosahedral Viruses explains how icosahedral capsids of different sizes assemble from copies of a single subunit protein chain, and explains triangulation numbers with examples.
- VIPERdb / VIrus Particle ExploreR database includes:
- Static images of virus capsids organized by taxa.
- The Virion Section of the ViralZone offers schematics for triangulation numbers with links to virus taxa, UniProt, etc. See also Browse by Virion.
Notes
- User:Jaime Prilusky/Test/4v99 shows a capsid available only in mmCIF format.
- User:Jaime Prilusky/Test/6ncl Giant virus, mmCIF only.
