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		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_1650&amp;diff=3505595</id>
		<title>Sandbox Reserved 1650</title>
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		<updated>2022-01-20T15:36:06Z</updated>

		<summary type="html">&lt;p&gt;Antoine Lambert: PDBID and PDB link&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;{{Sandbox_Reserved_ESBS20_}}&amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
== Human thyroglobulin (TG) ==&lt;br /&gt;
&amp;lt;StructureSection load=&#039;6scj&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;Human thyroglobulin&#039; scene=&#039;&#039;&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Introduction&#039;&#039;&#039;&lt;br /&gt;
[https://en.wikipedia.org/wiki/Thyroglobulin Human thyroglobulin (TG)] is a precursor of two  [https://en.wikipedia.org/wiki/Thyroid_hormones thyroid hormones] (TH): tetraiodothyronine or [[thyroxine]] (T4) and [[triiodothyronine (T3)]], essential for &#039;&#039;&#039;growth&#039;&#039;&#039;, &#039;&#039;&#039;development&#039;&#039;&#039; and the &#039;&#039;&#039;control of metabolism&#039;&#039;&#039;. Its structure is essential for the diagnosis, treatment and monitoring of thyroid-related diseases.&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;PDBID&#039;&#039;&#039;: 6scj.&lt;br /&gt;
&lt;br /&gt;
[https://www.rcsb.org/sequence/6SCJ/ See the complete sequence.]&lt;br /&gt;
&lt;br /&gt;
== Composition and 3D structure &amp;lt;ref&amp;gt;DOI 32025030&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
=== Global structure === &lt;br /&gt;
&#039;&#039;&#039;Human thyroglobulin&#039;&#039;&#039; is a dimeric glycoprotein (see a &amp;lt;scene name=&#039;86/868183/Monomer_tg/1&#039;&amp;gt;monomer&amp;lt;/scene&amp;gt;) consisting of 2 times &#039;&#039;&#039;2749 amino acid residues&#039;&#039;&#039; with a molecular weight of &#039;&#039;&#039;660 kDa&#039;&#039;&#039;. The average size of the dimer is &#039;&#039;&#039;120x235 Å&#039;&#039;&#039;. &lt;br /&gt;
 &lt;br /&gt;
Each of its monomers comprises &#039;&#039;&#039;5 distinct regions&#039;&#039;&#039; on which approximately 66 &amp;lt;scene name=&#039;86/868183/Tyr/1&#039;&amp;gt;tyrosines&amp;lt;/scene&amp;gt; (chain A in blue, chain B in green, chain C in dark red, chain D in light red) are distributed. These are the regions : &lt;br /&gt;
&amp;lt;scene name=&#039;86/868183/Ntd/6&#039;&amp;gt;N-terminal domain (NTD)&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=MuFHlCZCetU&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=5&amp;gt;NTD]], &amp;lt;scene name=&#039;86/868183/Core/4&#039;&amp;gt;Core&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=Lx1G1KGxKN8&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=8&amp;gt;CORE]], &amp;lt;scene name=&#039;86/868183/Flap/4&#039;&amp;gt;Flap&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=vk60Rdyo28A&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=6&amp;gt;FLAP]], &amp;lt;scene name=&#039;86/868183/Arm/3&#039;&amp;gt;Arm&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=XzeTjQKfO0E&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=9&amp;gt;ARM]] and &amp;lt;scene name=&#039;86/868183/Ctd/4&#039;&amp;gt;C-Terminal Domain (CTD)&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=N-mg_xj-deI&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=7&amp;gt;CTD]].&lt;br /&gt;
&lt;br /&gt;
The &amp;lt;scene name=&#039;86/868183/Ctd/4&#039;&amp;gt;carboxyl-terminal domain&amp;lt;/scene&amp;gt; of TG (about 520 amino acids) shows homology with the [[Acetylcholinesterase]] and other esterases.&lt;br /&gt;
&lt;br /&gt;
In addition, &amp;lt;scene name=&#039;86/868183/Tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; has about 120 cysteine residues allowing the formation of about 60 &amp;lt;scene name=&#039;86/868183/Ssbonds/1&#039;&amp;gt;disulfide bridge bonds&amp;lt;/scene&amp;gt; per &amp;lt;scene name=&#039;86/868183/Monomer_tg/1&#039;&amp;gt;monomer&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=Nuryu1aSqvY&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=11&amp;gt;Disulfide bridge]]. It confers great stability and solubility.&lt;br /&gt;
&lt;br /&gt;
These enzymes belong to the class of α-β hydrolase fold superfamily, characterized by α–helices and β-strands that roughly alternate along the polypeptide chain.&amp;lt;ref name=&amp;quot;jeso&amp;quot;&amp;gt;DOI 26595189&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Structure of hormonogenic sites ===&lt;br /&gt;
&#039;&#039;&#039;Hormonogenic sites&#039;&#039;&#039; are substrates for TH formation. They are formed by 2 or even 3 tyrosines at less than 15 Å from each other, and exposed to the solvent. Of these tyrosines, 1 or 2 are acceptors and 1 is a donor. &lt;br /&gt;
 &lt;br /&gt;
There are 4 hormonogenic sites for &amp;lt;scene name=&#039;86/868183/Tg/3&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; :&lt;br /&gt;
&lt;br /&gt;
- an &amp;lt;scene name=&#039;86/868183/Site_a/2&#039;&amp;gt;A site&amp;lt;/scene&amp;gt;, comprising two fixed donor tyrosines Y234 and Y149 and one flexible acceptor tyrosine: Y24 [[https://www.youtube.com/watch?v=98MKFRc6S_w&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=4&amp;gt;Site A]].&lt;br /&gt;
&lt;br /&gt;
- a &amp;lt;scene name=&#039;86/868183/Site_b/4&#039;&amp;gt;B site&amp;lt;/scene&amp;gt;, including one Y2573 donor and one Y2540 acceptor [[https://www.youtube.com/watch?v=aNd32NLk9Fk&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=3&amp;gt;Site B]].&lt;br /&gt;
&lt;br /&gt;
- a &#039;&#039;&#039;C site&#039;&#039;&#039;, comprising both donor and acceptor tyrosine Y2766 (not resolved in the map).&lt;br /&gt;
&lt;br /&gt;
- a &amp;lt;scene name=&#039;86/868183/Site_d/1&#039;&amp;gt;D site&amp;lt;/scene&amp;gt;, comprising a Y108 donor and a Y1310 acceptor [[https://www.youtube.com/watch?v=JYUPk59lVVw&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=2&amp;gt;Site D]].&lt;br /&gt;
 &lt;br /&gt;
An acidic Asp (aspartic acid) or Glu (glutamic acid) residue always precedes the acceptor and a lysine is always close to the donor.  &lt;br /&gt;
Except for site C, donors are at the fixed regions of the dimer while acceptors are at the flexible regions.&lt;br /&gt;
&lt;br /&gt;
== Synthesis&amp;lt;!-- &amp;lt;ref&amp;gt;PMID: 3681978&amp;lt;/ref&amp;gt; &amp;lt;ref&amp;gt;DOI 11581009&amp;lt;/ref&amp;gt; --&amp;gt;&amp;lt;ref&amp;gt;DOI 11479128&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;PMID: 6895876&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 3016640&amp;lt;/ref&amp;gt; and acquisition of its structure ==&lt;br /&gt;
=== Role and composition of the thyroid gland ===&lt;br /&gt;
&lt;br /&gt;
The [https://en.wikipedia.org/wiki/Thyroid/ thyroid] gland is an endocrine organ located in the neck that secretes thyroid hormones into the bloodstream. Among them, T4 and T3 are involved in the growth, development and regulation of the metabolism of vertebrates.&lt;br /&gt;
&lt;br /&gt;
The [https://en.wikipedia.org/wiki/Thyroid/ thyroid] gland is made up of thyroid vesicles, which are made up of thyroid follicular cells that are arranged around a lumen containing a viscous substance called colloid. The diet is a source of iodide I- ions which, once in the blood, are picked up by the thyroid cells and then partly discharged into the colloid.&lt;br /&gt;
&lt;br /&gt;
=== Expression of the TG gene===&lt;br /&gt;
In  humans, TG is coded by a large gene roughly &#039;&#039;&#039;300 kb long&#039;&#039;&#039;, located on chromosome 8. The number of exons has been estimated to be around 48, each of which is separated by introns varying in size up to 64 kb. TG gene expression is controlled positively  by &#039;&#039;&#039;thyro-tropin (TSH)&#039;&#039;&#039; through the modulation of the intra-cellular levels of &#039;&#039;&#039;cyclic adenosine monophosphate (cAMP)&#039;&#039;&#039; via its receptor (TSHr) located at the basal membrane of the cell.&amp;lt;ref&amp;gt;PMID: 11581009&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Post-translational modifications ===&lt;br /&gt;
TG also undergoes N-glycosylations in the [https://en.wikipedia.org/wiki/Endoplasmic_reticulum endoplasmic reticulum] at &amp;lt;scene name=&#039;86/868183/Glycosylation_sites/1&#039;&amp;gt;17 glycosylation sites&amp;lt;/scene&amp;gt;, so that 10% of its molecular weight is carbohydrate. TG also undergoes maturation steps in this organelle, where it acquires dilsufide-bonds. These modifications enhance its stability and solubility. Indeed, the two monomers are linked not by covalent interactions but via numerous interactions allowed by these N-glycosylations.&lt;br /&gt;
&lt;br /&gt;
=== Folding ===&lt;br /&gt;
Once synthesized, the acquisition of the 3D structure of the &amp;lt;scene name=&#039;86/868183/Full_tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=ZKZy3sVNYAo&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;gt;TG]] is enabled by the ER chaperone proteins of the thyroid follicular cells via a slow process &amp;lt;ref&amp;gt;DOI 10.1042/BJ20021257&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
== Functions ==&lt;br /&gt;
=== TH synthesis ===&lt;br /&gt;
==== Mechanism ====&lt;br /&gt;
Once their 3D structure is acquired, TGs are exported into the colloid by exocytosis thanks to their signal peptide which will be cleaved. This extracellular storage increases the amount of TG stored in the body. &lt;br /&gt;
 &lt;br /&gt;
In the colloid, about &#039;&#039;&#039;30 tyrosines&#039;&#039;&#039; out of the &#039;&#039;&#039;66 tyrosines&#039;&#039;&#039;, each consisting of a phenol group, are iodized. The quantity of iodinated tyrosine depends however on the iodide concentration of the colloid. Indeed, one or two iodide ions can be covalently bound to the colloid and thus give a &#039;&#039;&#039;di- (DIT)&#039;&#039;&#039; or &#039;&#039;&#039;mono-iodinated (MIT) phenol group&#039;&#039;&#039;. The iodination of the phenol groups is carried out by two membrane enzymes of the follicular cells: the double oxidase (&#039;&#039;&#039;DUOX&#039;&#039;&#039;) synthesizes the hydrogen peroxide H2O2 necessary for thyroid peroxidase (&#039;&#039;&#039;TPO&#039;&#039;&#039;). The synthesis is completed by TG proteolysis. &lt;br /&gt;
 &lt;br /&gt;
Due to the spatial conformation of &amp;lt;scene name=&#039;86/868183/Tg/3&#039;&amp;gt;TG&amp;lt;/scene&amp;gt;, there is a transfer of di- or mono-iodinated aromatic ring from a donor tyrosine to a close acceptor diiodotyrosine for the 14 tyrosines of the hormonogenic sites. Acceptor iodinated tyrosines are DITs because they are deprotonated due to their 6.5 acid pka facilitating the acceptance reaction leading to the formation of quinol-ether bonds, whereas donor iodinated tyrosines are MITs with a pKa of 8.5&amp;lt;ref&amp;gt;DOI 10.1530/eje.0.1380227&amp;lt;/ref&amp;gt;.&lt;br /&gt;
 &lt;br /&gt;
At the end of the coupling, the donor tyrosines are left with a dehydroalanine.&lt;br /&gt;
 &lt;br /&gt;
Once iodization and coupling have been performed, endocytosis of the colloid to the lysosome occurs. The &amp;lt;scene name=&#039;86/868183/Tg/3&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; is proteolyzed by cathepsin proteases&amp;lt;ref&amp;gt;DOI 1939080&amp;lt;/ref&amp;gt; and 7 TH are thus released from 14 mono- or di-iodinated tyrosines.&lt;br /&gt;
 &lt;br /&gt;
The hormone synthesis function of TG is thus particularly linked to its structure. Moreover, research shows that denaturation or a simple modification of its conformation prevents the formation of TH &amp;lt;ref&amp;gt;PMID:4710237&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 456595&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
==== Control ====&lt;br /&gt;
The synthesis of TH from TG is stimulated by thyroid stimulating hormone (TSH) secreted by the pituitary gland, a gland of the brain. When the TSH receptor is activated, glycosylations leading to the mono iodination of tyrosines promote the synthesis of T3&amp;lt;ref&amp;gt;DOI  3182849&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;PMID: 1370485&amp;lt;/ref&amp;gt;.&lt;br /&gt;
On the other hand, if the amount of hormones is too high, a negative feedback is exerted on this process while a small amount of these hormones exerts a positive feedback.&lt;br /&gt;
&lt;br /&gt;
=== Iodine tank ===&lt;br /&gt;
The complex and particularly stable structure of &amp;lt;scene name=&#039;86/868183/Tg/3&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; gives it iodide reservoir properties. Indeed, all iodinated but non-hormonoid tyrosines are useful for iodine storage in the thyroid gland. &lt;br /&gt;
&lt;br /&gt;
== Interest in the medical field&amp;lt;ref&amp;gt;DOI 6814409&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 29984794&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;jeso&amp;quot;/&amp;gt; ==&lt;br /&gt;
=== Modification of the TG quantity related to the disease ===&lt;br /&gt;
A healthy subject has between &#039;&#039;&#039;5 and 25 µg of TG per liter&#039;&#039;&#039; of blood.&amp;lt;ref&amp;gt;DOI 5773064&amp;lt;/ref&amp;gt; In case of thyroid dysfunction, this level may increase or decrease. For example, it decreases in the case of congenital athyreosis (insufficiency of the thyroid gland) or prior to a miscarriage due to the presence of anti-TG antibodies, but increases in the case of cancer, thyroiditis, inflammation of the thyroid or autoimmune thyroid diseases &#039;&#039;&#039;AITD&#039;&#039;&#039; &amp;lt;ref&amp;gt;DOI 24147207&amp;lt;/ref&amp;gt;(Grave&#039;s disease, Hashimoto&#039;s thyroiditis).&amp;lt;ref&amp;gt;DOI 11788684&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 17614775&amp;lt;/ref&amp;gt;&lt;br /&gt;
 &lt;br /&gt;
In addition, a decrease in the size or capacity of the thyroid causes a decrease in the synthesis of TH by the &amp;lt;scene name=&#039;86/868183/Tg/3&#039;&amp;gt;TG&amp;lt;/scene&amp;gt;, and thus a drop in the blood level of T4 and T3, which in turn causes heart disease, brain disease and abnormalities in the development of the fetus. &amp;lt;ref&amp;gt;DOI 29246752&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 28593684&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 12721190&amp;lt;/ref&amp;gt;&lt;br /&gt;
 &lt;br /&gt;
The variation of the quantity of TG can thus be as much a cause as a consequence of disease.&amp;lt;ref&amp;gt;DOI 17201802&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Use of TG to treat diseases ===&lt;br /&gt;
A classic &#039;&#039;&#039;TSH-stimulated&#039;&#039;&#039; &amp;lt;scene name=&#039;86/868183/Tg/3&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; measurement or ultrasensitive &amp;lt;scene name=&#039;86/868183/Tg/4&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; measurement allows to control its rate in a more or less sensitive way and therefore to detect a disease like those mentioned above, to ensure the effectiveness of a treatment and the absence of recurrence and to avoid&lt;br /&gt;
miscarriages.&amp;lt;ref&amp;gt;DOI 3681445&amp;lt;/ref&amp;gt;&lt;br /&gt;
Since serum &amp;lt;scene name=&#039;86/868183/Tg/3&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; levels are correlated with the volume of thyroid tissue, we can also estimate the mass of thyroid tissue to detect &#039;&#039;&#039;hyperthyroidism&#039;&#039;&#039;, a disease related to an enlarged thyroid or, conversely, &#039;&#039;&#039;hypothyroidism&#039;&#039;&#039;.&lt;br /&gt;
 &lt;br /&gt;
For example, [https://en.wikipedia.org/wiki/Thyroidectomy  thyroidectomy] and a iodine-131 therapy can be performed to cure thyroid cancer with an 80% chance. Following removal and iodine-131 therapy, thyroglobulin is this time produced by malignant thyrocytes. As a result, its blood level is indistinguishable from that of a healthy person. &amp;lt;ref&amp;gt;PMID: 762873&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 21649472&amp;lt;/ref&amp;gt;&lt;br /&gt;
But in case of recurrence and persistence of cancer, its level can increase again. Thyroglobulin therefore always serves as a tumor marker allowing us to estimate the risk of recurrence (&amp;gt;2ng/ml) or persistence (&amp;gt;1ng/ml) or remission.&amp;lt;ref&amp;gt;DOI 10.1677/ERC-10-0292&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
== References ==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Antoine Lambert</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_1650&amp;diff=3502750</id>
		<title>Sandbox Reserved 1650</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_1650&amp;diff=3502750"/>
		<updated>2022-01-18T15:08:14Z</updated>

		<summary type="html">&lt;p&gt;Antoine Lambert: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;{{Sandbox_Reserved_ESBS20_}}&amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
== Human thyroglobulin (TG) ==&lt;br /&gt;
&amp;lt;StructureSection load=&#039;6scj&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;Human thyroglobulin&#039; scene=&#039;&#039;&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Introduction&#039;&#039;&#039;&lt;br /&gt;
[https://en.wikipedia.org/wiki/Thyroglobulin Human thyroglobulin (TG)] is a precursor of two  [https://en.wikipedia.org/wiki/Thyroid_hormones thyroid hormones] (TH): tetraiodothyronine or [[thyroxine]] (T4) and [[triiodothyronine (T3)]], essential for &#039;&#039;&#039;growth&#039;&#039;&#039;, &#039;&#039;&#039;development&#039;&#039;&#039; and the &#039;&#039;&#039;control of metabolism&#039;&#039;&#039;. Its structure is essential for the diagnosis, treatment and monitoring of thyroid-related diseases.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== Composition and 3D structure &amp;lt;ref&amp;gt;DOI 32025030&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
=== Global structure === &lt;br /&gt;
&#039;&#039;&#039;Human thyroglobulin&#039;&#039;&#039; is a dimeric glycoprotein (see a &amp;lt;scene name=&#039;86/868183/Monomer_tg/1&#039;&amp;gt;monomer&amp;lt;/scene&amp;gt;) consisting of 2 times &#039;&#039;&#039;2749 amino acid residues&#039;&#039;&#039; with a molecular weight of &#039;&#039;&#039;660 kDa&#039;&#039;&#039;. The average size of the dimer is &#039;&#039;&#039;120x235 Å&#039;&#039;&#039;. &lt;br /&gt;
 &lt;br /&gt;
Each of its monomers comprises &#039;&#039;&#039;5 distinct regions&#039;&#039;&#039; on which approximately 66 &amp;lt;scene name=&#039;86/868183/Tyr/1&#039;&amp;gt;tyrosines&amp;lt;/scene&amp;gt; (chain A in blue, chain B in green, chain C in dark red, chain D in light red) are distributed. These are the regions : &lt;br /&gt;
&amp;lt;scene name=&#039;86/868183/Ntd/6&#039;&amp;gt;N-terminal domain (NTD)&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=MuFHlCZCetU&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=5&amp;gt;NTD]], &amp;lt;scene name=&#039;86/868183/Core/4&#039;&amp;gt;Core&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=Lx1G1KGxKN8&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=8&amp;gt;CORE]], &amp;lt;scene name=&#039;86/868183/Flap/4&#039;&amp;gt;Flap&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=vk60Rdyo28A&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=6&amp;gt;FLAP]], &amp;lt;scene name=&#039;86/868183/Arm/3&#039;&amp;gt;Arm&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=XzeTjQKfO0E&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=9&amp;gt;ARM]] and &amp;lt;scene name=&#039;86/868183/Ctd/4&#039;&amp;gt;C-Terminal Domain (CTD)&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=N-mg_xj-deI&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=7&amp;gt;CTD]].&lt;br /&gt;
&lt;br /&gt;
The &amp;lt;scene name=&#039;86/868183/Ctd/4&#039;&amp;gt;carboxyl-terminal domain&amp;lt;/scene&amp;gt; of TG (about 520 amino acids) shows homology with the [[Acetylcholinesterase]] and other esterases.&lt;br /&gt;
&lt;br /&gt;
In addition, &amp;lt;scene name=&#039;86/868183/Tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; has about 120 cysteine residues allowing the formation of about 60 &amp;lt;scene name=&#039;86/868183/Ssbonds/1&#039;&amp;gt;disulfide bridge bonds&amp;lt;/scene&amp;gt; per &amp;lt;scene name=&#039;86/868183/Monomer_tg/1&#039;&amp;gt;monomer&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=Nuryu1aSqvY&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=11&amp;gt;Disulfide bridge]]. It confers great stability and solubility.&lt;br /&gt;
&lt;br /&gt;
These enzymes belong to the class of α-β hydrolase fold superfamily, characterized by α–helices and β-strands that roughly alternate along the polypeptide chain.&amp;lt;ref name=&amp;quot;jeso&amp;quot;&amp;gt;DOI 26595189&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Structure of hormonogenic sites ===&lt;br /&gt;
&#039;&#039;&#039;Hormonogenic sites&#039;&#039;&#039; are substrates for TH formation. They are formed by 2 or even 3 tyrosines at less than 15 Å from each other, and exposed to the solvent. Of these tyrosines, 1 or 2 are acceptors and 1 is a donor. &lt;br /&gt;
 &lt;br /&gt;
There are 4 hormonogenic sites for &amp;lt;scene name=&#039;86/868183/Tg/3&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; :&lt;br /&gt;
&lt;br /&gt;
- an &amp;lt;scene name=&#039;86/868183/Site_a/2&#039;&amp;gt;A site&amp;lt;/scene&amp;gt;, comprising two fixed donor tyrosines Y234 and Y149 and one flexible acceptor tyrosine: Y24 [[https://www.youtube.com/watch?v=98MKFRc6S_w&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=4&amp;gt;Site A]].&lt;br /&gt;
&lt;br /&gt;
- a &amp;lt;scene name=&#039;86/868183/Site_b/4&#039;&amp;gt;B site&amp;lt;/scene&amp;gt;, including one Y2573 donor and one Y2540 acceptor [[https://www.youtube.com/watch?v=aNd32NLk9Fk&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=3&amp;gt;Site B]].&lt;br /&gt;
&lt;br /&gt;
- a &#039;&#039;&#039;C site&#039;&#039;&#039;, comprising both donor and acceptor tyrosine Y2766 (not resolved in the map).&lt;br /&gt;
&lt;br /&gt;
- a &amp;lt;scene name=&#039;86/868183/Site_d/1&#039;&amp;gt;D site&amp;lt;/scene&amp;gt;, comprising a Y108 donor and a Y1310 acceptor [[https://www.youtube.com/watch?v=JYUPk59lVVw&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=2&amp;gt;Site D]].&lt;br /&gt;
 &lt;br /&gt;
An acidic Asp (aspartic acid) or Glu (glutamic acid) residue always precedes the acceptor and a lysine is always close to the donor.  &lt;br /&gt;
Except for site C, donors are at the fixed regions of the dimer while acceptors are at the flexible regions.&lt;br /&gt;
&lt;br /&gt;
== Synthesis&amp;lt;!-- &amp;lt;ref&amp;gt;PMID: 3681978&amp;lt;/ref&amp;gt; &amp;lt;ref&amp;gt;DOI 11581009&amp;lt;/ref&amp;gt; --&amp;gt;&amp;lt;ref&amp;gt;DOI 11479128&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;PMID: 6895876&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 3016640&amp;lt;/ref&amp;gt; and acquisition of its structure ==&lt;br /&gt;
=== Role and composition of the thyroid gland ===&lt;br /&gt;
&lt;br /&gt;
The [https://en.wikipedia.org/wiki/Thyroid/ thyroid] gland is an endocrine organ located in the neck that secretes thyroid hormones into the bloodstream. Among them, T4 and T3 are involved in the growth, development and regulation of the metabolism of vertebrates.&lt;br /&gt;
&lt;br /&gt;
The [https://en.wikipedia.org/wiki/Thyroid/ thyroid] gland is made up of thyroid vesicles, which are made up of thyroid follicular cells that are arranged around a lumen containing a viscous substance called colloid. The diet is a source of iodide I- ions which, once in the blood, are picked up by the thyroid cells and then partly discharged into the colloid.&lt;br /&gt;
&lt;br /&gt;
=== Expression of the TG gene===&lt;br /&gt;
In  humans, TG is coded by a large gene roughly &#039;&#039;&#039;300 kb long&#039;&#039;&#039;, located on chromosome 8. The number of exons has been estimated to be around 48, each of which is separated by introns varying in size up to 64 kb. TG gene expression is controlled positively  by &#039;&#039;&#039;thyro-tropin (TSH)&#039;&#039;&#039; through the modulation of the intra-cellular levels of &#039;&#039;&#039;cyclic adenosine monophosphate (cAMP)&#039;&#039;&#039; via its receptor (TSHr) located at the basal membrane of the cell.&amp;lt;ref&amp;gt;PMID: 11581009&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Post-translational modifications ===&lt;br /&gt;
TG also undergoes N-glycosylations in the [https://en.wikipedia.org/wiki/Endoplasmic_reticulum endoplasmic reticulum] at &amp;lt;scene name=&#039;86/868183/Glycosylation_sites/1&#039;&amp;gt;17 glycosylation sites&amp;lt;/scene&amp;gt;, so that 10% of its molecular weight is carbohydrate. TG also undergoes maturation steps in this organelle, where it acquires dilsufide-bonds. These modifications enhance its stability and solubility. Indeed, the two monomers are linked not by covalent interactions but via numerous interactions allowed by these N-glycosylations.&lt;br /&gt;
&lt;br /&gt;
=== Folding ===&lt;br /&gt;
Once synthesized, the acquisition of the 3D structure of the &amp;lt;scene name=&#039;86/868183/Full_tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=ZKZy3sVNYAo&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;gt;TG]] is enabled by the ER chaperone proteins of the thyroid follicular cells via a slow process &amp;lt;ref&amp;gt;DOI 10.1042/BJ20021257&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
== Functions ==&lt;br /&gt;
=== TH synthesis ===&lt;br /&gt;
==== Mechanism ====&lt;br /&gt;
Once their 3D structure is acquired, TGs are exported into the colloid by exocytosis thanks to their signal peptide which will be cleaved. This extracellular storage increases the amount of TG stored in the body. &lt;br /&gt;
 &lt;br /&gt;
In the colloid, about &#039;&#039;&#039;30 tyrosines&#039;&#039;&#039; out of the &#039;&#039;&#039;66 tyrosines&#039;&#039;&#039;, each consisting of a phenol group, are iodized. The quantity of iodinated tyrosine depends however on the iodide concentration of the colloid. Indeed, one or two iodide ions can be covalently bound to the colloid and thus give a &#039;&#039;&#039;di- (DIT)&#039;&#039;&#039; or &#039;&#039;&#039;mono-iodinated (MIT) phenol group&#039;&#039;&#039;. The iodination of the phenol groups is carried out by two membrane enzymes of the follicular cells: the double oxidase (&#039;&#039;&#039;DUOX&#039;&#039;&#039;) synthesizes the hydrogen peroxide H2O2 necessary for thyroid peroxidase (&#039;&#039;&#039;TPO&#039;&#039;&#039;). The synthesis is completed by TG proteolysis. &lt;br /&gt;
 &lt;br /&gt;
Due to the spatial conformation of &amp;lt;scene name=&#039;86/868183/Tg/3&#039;&amp;gt;TG&amp;lt;/scene&amp;gt;, there is a transfer of di- or mono-iodinated aromatic ring from a donor tyrosine to a close acceptor diiodotyrosine for the 14 tyrosines of the hormonogenic sites. Acceptor iodinated tyrosines are DITs because they are deprotonated due to their 6.5 acid pka facilitating the acceptance reaction leading to the formation of quinol-ether bonds, whereas donor iodinated tyrosines are MITs with a pKa of 8.5&amp;lt;ref&amp;gt;DOI 10.1530/eje.0.1380227&amp;lt;/ref&amp;gt;.&lt;br /&gt;
 &lt;br /&gt;
At the end of the coupling, the donor tyrosines are left with a dehydroalanine.&lt;br /&gt;
 &lt;br /&gt;
Once iodization and coupling have been performed, endocytosis of the colloid to the lysosome occurs. The &amp;lt;scene name=&#039;86/868183/Tg/3&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; is proteolyzed by cathepsin proteases&amp;lt;ref&amp;gt;DOI 1939080&amp;lt;/ref&amp;gt; and 7 TH are thus released from 14 mono- or di-iodinated tyrosines.&lt;br /&gt;
 &lt;br /&gt;
The hormone synthesis function of TG is thus particularly linked to its structure. Moreover, research shows that denaturation or a simple modification of its conformation prevents the formation of TH &amp;lt;ref&amp;gt;PMID:4710237&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 456595&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
==== Control ====&lt;br /&gt;
The synthesis of TH from TG is stimulated by thyroid stimulating hormone (TSH) secreted by the pituitary gland, a gland of the brain. When the TSH receptor is activated, glycosylations leading to the mono iodination of tyrosines promote the synthesis of T3&amp;lt;ref&amp;gt;DOI  3182849&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;PMID: 1370485&amp;lt;/ref&amp;gt;.&lt;br /&gt;
On the other hand, if the amount of hormones is too high, a negative feedback is exerted on this process while a small amount of these hormones exerts a positive feedback.&lt;br /&gt;
&lt;br /&gt;
=== Iodine tank ===&lt;br /&gt;
The complex and particularly stable structure of &amp;lt;scene name=&#039;86/868183/Tg/3&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; gives it iodide reservoir properties. Indeed, all iodinated but non-hormonoid tyrosines are useful for iodine storage in the thyroid gland. &lt;br /&gt;
&lt;br /&gt;
== Interest in the medical field&amp;lt;ref&amp;gt;DOI 6814409&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 29984794&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;jeso&amp;quot;/&amp;gt; ==&lt;br /&gt;
=== Modification of the TG quantity related to the disease ===&lt;br /&gt;
A healthy subject has between &#039;&#039;&#039;5 and 25 µg of TG per liter&#039;&#039;&#039; of blood.&amp;lt;ref&amp;gt;DOI 5773064&amp;lt;/ref&amp;gt; In case of thyroid dysfunction, this level may increase or decrease. For example, it decreases in the case of congenital athyreosis (insufficiency of the thyroid gland) or prior to a miscarriage due to the presence of anti-TG antibodies, but increases in the case of cancer, thyroiditis, inflammation of the thyroid or autoimmune thyroid diseases &#039;&#039;&#039;AITD&#039;&#039;&#039; &amp;lt;ref&amp;gt;DOI 24147207&amp;lt;/ref&amp;gt;(Grave&#039;s disease, Hashimoto&#039;s thyroiditis).&amp;lt;ref&amp;gt;DOI 11788684&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 17614775&amp;lt;/ref&amp;gt;&lt;br /&gt;
 &lt;br /&gt;
In addition, a decrease in the size or capacity of the thyroid causes a decrease in the synthesis of TH by the &amp;lt;scene name=&#039;86/868183/Tg/3&#039;&amp;gt;TG&amp;lt;/scene&amp;gt;, and thus a drop in the blood level of T4 and T3, which in turn causes heart disease, brain disease and abnormalities in the development of the fetus. &amp;lt;ref&amp;gt;DOI 29246752&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 28593684&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 12721190&amp;lt;/ref&amp;gt;&lt;br /&gt;
 &lt;br /&gt;
The variation of the quantity of TG can thus be as much a cause as a consequence of disease.&amp;lt;ref&amp;gt;DOI 17201802&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Use of TG to treat diseases ===&lt;br /&gt;
A classic &#039;&#039;&#039;TSH-stimulated&#039;&#039;&#039; &amp;lt;scene name=&#039;86/868183/Tg/3&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; measurement or ultrasensitive &amp;lt;scene name=&#039;86/868183/Tg/4&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; measurement allows to control its rate in a more or less sensitive way and therefore to detect a disease like those mentioned above, to ensure the effectiveness of a treatment and the absence of recurrence and to avoid&lt;br /&gt;
miscarriages.&amp;lt;ref&amp;gt;DOI 3681445&amp;lt;/ref&amp;gt;&lt;br /&gt;
Since serum &amp;lt;scene name=&#039;86/868183/Tg/3&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; levels are correlated with the volume of thyroid tissue, we can also estimate the mass of thyroid tissue to detect &#039;&#039;&#039;hyperthyroidism&#039;&#039;&#039;, a disease related to an enlarged thyroid or, conversely, &#039;&#039;&#039;hypothyroidism&#039;&#039;&#039;.&lt;br /&gt;
 &lt;br /&gt;
For example, [https://en.wikipedia.org/wiki/Thyroidectomy  thyroidectomy] and a iodine-131 therapy can be performed to cure thyroid cancer with an 80% chance. Following removal and iodine-131 therapy, thyroglobulin is this time produced by malignant thyrocytes. As a result, its blood level is indistinguishable from that of a healthy person. &amp;lt;ref&amp;gt;PMID: 762873&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 21649472&amp;lt;/ref&amp;gt;&lt;br /&gt;
But in case of recurrence and persistence of cancer, its level can increase again. Thyroglobulin therefore always serves as a tumor marker allowing us to estimate the risk of recurrence (&amp;gt;2ng/ml) or persistence (&amp;gt;1ng/ml) or remission.&amp;lt;ref&amp;gt;DOI 10.1677/ERC-10-0292&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
== References ==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Antoine Lambert</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_1650&amp;diff=3502679</id>
		<title>Sandbox Reserved 1650</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_1650&amp;diff=3502679"/>
		<updated>2022-01-17T16:11:14Z</updated>

		<summary type="html">&lt;p&gt;Antoine Lambert: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;{{Sandbox_Reserved_ESBS20_}}&amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
== Human thyroglobulin (TG) ==&lt;br /&gt;
&amp;lt;StructureSection load=&#039;6scj&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;Human thyroglobulin&#039; scene=&#039;&#039;&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Introduction&#039;&#039;&#039;&lt;br /&gt;
[https://en.wikipedia.org/wiki/Thyroglobulin Human thyroglobulin (TG)] is a precursor of two  [https://en.wikipedia.org/wiki/Thyroid_hormones thyroid hormones] (TH): tetraiodothyronine or [[thyroxine]] (T4) and [[triiodothyronine (T3)]], essential for &#039;&#039;&#039;growth&#039;&#039;&#039;, &#039;&#039;&#039;development&#039;&#039;&#039; and the &#039;&#039;&#039;control of metabolism&#039;&#039;&#039;. Its structure is essential for the diagnosis, treatment and monitoring of thyroid-related diseases.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== Composition and 3D structure &amp;lt;ref&amp;gt;DOI 32025030&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
=== Global structure === &lt;br /&gt;
&#039;&#039;&#039;Human thyroglobulin&#039;&#039;&#039; is a dimeric glycoprotein (see a &amp;lt;scene name=&#039;86/868183/Monomer_tg/1&#039;&amp;gt;monomer&amp;lt;/scene&amp;gt;) consisting of 2 times &#039;&#039;&#039;2749 amino acid residues&#039;&#039;&#039; with a molecular weight of &#039;&#039;&#039;660 kDa&#039;&#039;&#039;. The average size of the dimer is &#039;&#039;&#039;120x235 Å&#039;&#039;&#039;. &lt;br /&gt;
 &lt;br /&gt;
Each of its monomers comprises &#039;&#039;&#039;5 distinct regions&#039;&#039;&#039; on which approximately 66 &amp;lt;scene name=&#039;86/868183/Tyr/1&#039;&amp;gt;tyrosines&amp;lt;/scene&amp;gt; (chain A in blue, chain B in green, chain C in dark red, chain D in light red) are distributed. These are the regions : &lt;br /&gt;
&amp;lt;scene name=&#039;86/868183/Ntd/6&#039;&amp;gt;N-terminal domain (NTD)&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=MuFHlCZCetU&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=5&amp;gt;NTD]], &amp;lt;scene name=&#039;86/868183/Core/4&#039;&amp;gt;Core&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=Lx1G1KGxKN8&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=8&amp;gt;CORE]], &amp;lt;scene name=&#039;86/868183/Flap/4&#039;&amp;gt;Flap&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=vk60Rdyo28A&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=6&amp;gt;FLAP]], &amp;lt;scene name=&#039;86/868183/Arm/3&#039;&amp;gt;Arm&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=XzeTjQKfO0E&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=9&amp;gt;ARM]] and &amp;lt;scene name=&#039;86/868183/Ctd/4&#039;&amp;gt;C-Terminal Domain (CTD)&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=N-mg_xj-deI&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=7&amp;gt;CTD]].&lt;br /&gt;
&lt;br /&gt;
The &amp;lt;scene name=&#039;86/868183/Ctd/4&#039;&amp;gt;carboxyl-terminal domain&amp;lt;/scene&amp;gt; of TG (about 520 amino acids) shows homology with the [[Acetylcholinesterase]] and other esterases.&lt;br /&gt;
&lt;br /&gt;
In addition, &amp;lt;scene name=&#039;86/868183/Tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; has about 120 cysteine residues allowing the formation of about 60 &amp;lt;scene name=&#039;86/868183/Ssbonds/1&#039;&amp;gt;disulfide bridge bonds&amp;lt;/scene&amp;gt; per &amp;lt;scene name=&#039;86/868183/Monomer_tg/1&#039;&amp;gt;monomer&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=Nuryu1aSqvY&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=11&amp;gt;Disulfide bridge]]. It confers great stability and solubility.&lt;br /&gt;
&lt;br /&gt;
These enzymes belong to the class of α-β hydrolase fold superfamily, characterized by α–helices and β-strands that roughly alternate along the polypeptide chain.&amp;lt;ref name=&amp;quot;jeso&amp;quot;&amp;gt;DOI 26595189&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Structure of hormonogenic sites ===&lt;br /&gt;
&#039;&#039;&#039;Hormonogenic sites&#039;&#039;&#039; are substrates for TH formation. They are formed by 2 or even 3 tyrosines at less than 15 Å from each other, and exposed to the solvent. Of these tyrosines, 1 or 2 are acceptors and 1 is a donor. &lt;br /&gt;
 &lt;br /&gt;
There are 4 hormonogenic sites for &amp;lt;scene name=&#039;86/868183/Tg/3&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; :&lt;br /&gt;
&lt;br /&gt;
- an &amp;lt;scene name=&#039;86/868183/Site_a/2&#039;&amp;gt;A site&amp;lt;/scene&amp;gt;, comprising two fixed donor tyrosines Y234 and Y149 and one flexible acceptor tyrosine: Y24 [[https://www.youtube.com/watch?v=98MKFRc6S_w&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=4&amp;gt;Site A]].&lt;br /&gt;
&lt;br /&gt;
- a &amp;lt;scene name=&#039;86/868183/Site_b/4&#039;&amp;gt;B site&amp;lt;/scene&amp;gt;, including one Y2573 donor and one Y2540 acceptor [[https://www.youtube.com/watch?v=aNd32NLk9Fk&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=3&amp;gt;Site B]].&lt;br /&gt;
&lt;br /&gt;
- a &#039;&#039;&#039;C site&#039;&#039;&#039;, comprising both donor and acceptor tyrosine Y2766 (not resolved in the map).&lt;br /&gt;
&lt;br /&gt;
- a &amp;lt;scene name=&#039;86/868183/Site_d/1&#039;&amp;gt;D site&amp;lt;/scene&amp;gt;, comprising a Y108 donor and a Y1310 acceptor [[https://www.youtube.com/watch?v=JYUPk59lVVw&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=2&amp;gt;Site D]].&lt;br /&gt;
 &lt;br /&gt;
An acidic Asp (aspartic acid) or Glu (glutamic acid) residue always precedes the acceptor and a lysine is always close to the donor.  &lt;br /&gt;
Except for site C, donors are at the fixed regions of the dimer while acceptors are at the flexible regions.&lt;br /&gt;
&lt;br /&gt;
== Synthesis&amp;lt;!-- &amp;lt;ref&amp;gt;PMID: 3681978&amp;lt;/ref&amp;gt; &amp;lt;ref&amp;gt;DOI 11581009&amp;lt;/ref&amp;gt; --&amp;gt;&amp;lt;ref&amp;gt;DOI 11479128&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;PMID: 6895876&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 3016640&amp;lt;/ref&amp;gt; and acquisition of its structure ==&lt;br /&gt;
=== Role and composition of the thyroid gland ===&lt;br /&gt;
&lt;br /&gt;
The [https://en.wikipedia.org/wiki/Thyroid/ thyroid] gland is an endocrine organ located in the neck that secretes thyroid hormones into the bloodstream. Among them, T4 and T3 are involved in the growth, development and regulation of the metabolism of vertebrates.&lt;br /&gt;
&lt;br /&gt;
The [https://en.wikipedia.org/wiki/Thyroid/ thyroid] gland is made up of thyroid vesicles, which are made up of thyroid follicular cells that are arranged around a lumen containing a viscous substance called colloid. The diet is a source of iodide I- ions which, once in the blood, are picked up by the thyroid cells and then partly discharged into the colloid.&lt;br /&gt;
&lt;br /&gt;
=== Expression of the TG gene===&lt;br /&gt;
In  humans, TG is coded by a large gene roughly &#039;&#039;&#039;300 kb long&#039;&#039;&#039;, located on chromosome 8. The number of exons has been estimated to be around 48, each of which is separated by introns varying in size up to 64 kb. TG gene expresion is controlled positively  by &#039;&#039;&#039;thyro-tropin (TSH)&#039;&#039;&#039; through the modulation of the intra-cellular levels of &#039;&#039;&#039;cyclic adenosine monophosphate (cAMP)&#039;&#039;&#039; via its receptor (TSHr) located at the basal membrane of the cell.&amp;lt;ref&amp;gt;PMID: 11581009&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Post-translational modifications ===&lt;br /&gt;
TG also undergoes N-glycosylations in the [https://en.wikipedia.org/wiki/Endoplasmic_reticulum endoplasmic reticulum] at &amp;lt;scene name=&#039;86/868183/Glycosylation_sites/1&#039;&amp;gt;17 glycosylation sites&amp;lt;/scene&amp;gt;, so that 10% of its molecular weight is carbohydrate. TG also undergoes maturation steps in this organelle, where it acquires dilsufide-bonds. These modifications enhance its stability and solubility. Indeed, the two monomers are linked not by covalent interactions but via numerous interactions allowed by these N-glycosylations.&lt;br /&gt;
&lt;br /&gt;
=== Folding ===&lt;br /&gt;
Once synthesized, the acquisition of the 3D structure of the &amp;lt;scene name=&#039;86/868183/Full_tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=ZKZy3sVNYAo&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;gt;TG]] is enabled by the ER chaperone proteins of the thyroid follicular cells via a slow process &amp;lt;ref&amp;gt;DOI 10.1042/BJ20021257&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
== Functions ==&lt;br /&gt;
=== TH synthesis ===&lt;br /&gt;
==== Mechanism ====&lt;br /&gt;
Once their 3D structure is acquired, TGs are exported into the colloid by exocytosis thanks to their signal peptide which will be cleaved. This extracellular storage increases the amount of TG stored in the body. &lt;br /&gt;
 &lt;br /&gt;
In the colloid, about &#039;&#039;&#039;30 tyrosines&#039;&#039;&#039; out of the &#039;&#039;&#039;66 tyrosines&#039;&#039;&#039;, each consisting of a phenol group, are iodized. The quantity of iodinated tyrosine depends however on the iodide concentration of the colloid. Indeed, one or two iodide ions can be covalently bound to the colloid and thus give a &#039;&#039;&#039;di- (DIT)&#039;&#039;&#039; or &#039;&#039;&#039;mono-iodinated (MIT) phenol group&#039;&#039;&#039;. The iodination of the phenol groups is carried out by two membrane enzymes of the follicular cells: the double oxidase (&#039;&#039;&#039;DUOX&#039;&#039;&#039;) synthesizes the hydrogen peroxide H2O2 necessary for thyroid peroxidase (&#039;&#039;&#039;TPO&#039;&#039;&#039;). The synthesis is completed by TG proteolysis. &lt;br /&gt;
 &lt;br /&gt;
Due to the spatial conformation of &amp;lt;scene name=&#039;86/868183/Tg/3&#039;&amp;gt;TG&amp;lt;/scene&amp;gt;, there is a transfer of di- or mono-iodinated aromatic ring from a donor tyrosine to a close acceptor diiodotyrosine for the 14 tyrosines of the hormonogenic sites. Acceptor iodinated tyrosines are DITs because they are deprotonated due to their 6.5 acid pka facilitating the acceptance reaction leading to the formation of quinol-ether bonds, whereas donor iodinated tyrosines are MITs with a pKa of 8.5&amp;lt;ref&amp;gt;DOI 10.1530/eje.0.1380227&amp;lt;/ref&amp;gt;.&lt;br /&gt;
 &lt;br /&gt;
At the end of the coupling, the donor tyrosines are left with a dehydroalanine.&lt;br /&gt;
 &lt;br /&gt;
Once iodization and coupling have been performed, endocytosis of the colloid to the lysosome occurs. The &amp;lt;scene name=&#039;86/868183/Tg/3&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; is proteolyzed by cathepsin proteases&amp;lt;ref&amp;gt;DOI 1939080&amp;lt;/ref&amp;gt; and 7 TH are thus released from 14 mono- or di-iodinated tyrosines.&lt;br /&gt;
 &lt;br /&gt;
The hormone synthesis function of TG is thus particularly linked to its structure. Moreover, research shows that denaturation or a simple modification of its conformation prevents the formation of TH &amp;lt;ref&amp;gt;PMID:4710237&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 456595&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
==== Control ====&lt;br /&gt;
The synthesis of TH from TG is stimulated by thyroid stimulating hormone (TSH) secreted by the pituitary gland, a gland of the brain. When the TSH receptor is activated, glycosylations leading to the mono iodination of tyrosines promote the synthesis of T3&amp;lt;ref&amp;gt;DOI  3182849&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;PMID: 1370485&amp;lt;/ref&amp;gt;.&lt;br /&gt;
On the other hand, if the amount of hormones is too high, a negative feedback is exerted on this process while a small amount of these hormones exerts a positive feedback.&lt;br /&gt;
&lt;br /&gt;
=== Iodine tank ===&lt;br /&gt;
The complex and particularly stable structure of &amp;lt;scene name=&#039;86/868183/Tg/3&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; gives it iodide reservoir properties. Indeed, all iodinated but non-hormonoid tyrosines are useful for iodine storage in the thyroid gland. &lt;br /&gt;
&lt;br /&gt;
== Interest in the medical field&amp;lt;ref&amp;gt;DOI 6814409&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 29984794&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;jeso&amp;quot;/&amp;gt; ==&lt;br /&gt;
=== Modification of the TG quantity related to the disease ===&lt;br /&gt;
A healthy subject has between &#039;&#039;&#039;5 and 25 µg of TG per liter&#039;&#039;&#039; of blood.&amp;lt;ref&amp;gt;DOI 5773064&amp;lt;/ref&amp;gt; In case of thyroid dysfunction, this level may increase or decrease. For example, it decreases in the case of congenital athyreosis (insufficiency of the thyroid gland) or prior to a miscarriage due to the presence of anti-TG antibodies, but increases in the case of cancer, thyroiditis, inflammation of the thyroid or autoimmune thyroid diseases &#039;&#039;&#039;AITD&#039;&#039;&#039; &amp;lt;ref&amp;gt;DOI 24147207&amp;lt;/ref&amp;gt;(Grave&#039;s disease, Hashimoto&#039;s thyroiditis).&amp;lt;ref&amp;gt;DOI 11788684&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 17614775&amp;lt;/ref&amp;gt;&lt;br /&gt;
 &lt;br /&gt;
In addition, a decrease in the size or capacity of the thyroid causes a decrease in the synthesis of TH by the &amp;lt;scene name=&#039;86/868183/Tg/3&#039;&amp;gt;TG&amp;lt;/scene&amp;gt;, and thus a drop in the blood level of T4 and T3, which in turn causes heart disease, brain disease and abnormalities in the development of the fetus. &amp;lt;ref&amp;gt;DOI 29246752&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 28593684&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 12721190&amp;lt;/ref&amp;gt;&lt;br /&gt;
 &lt;br /&gt;
The variation of the quantity of TG can thus be as much a cause as a consequence of disease.&amp;lt;ref&amp;gt;DOI 17201802&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Use of TG to treat diseases ===&lt;br /&gt;
A classic &#039;&#039;&#039;TSH-stimulated&#039;&#039;&#039; &amp;lt;scene name=&#039;86/868183/Tg/3&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; measurement or ultrasensitive &amp;lt;scene name=&#039;86/868183/Tg/4&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; measurement allows to control its rate in a more or less sensitive way and therefore to detect a disease like those mentioned above, to ensure the effectiveness of a treatment and the absence of recurrence and to avoid&lt;br /&gt;
miscarriages.&amp;lt;ref&amp;gt;DOI 3681445&amp;lt;/ref&amp;gt;&lt;br /&gt;
Since serum &amp;lt;scene name=&#039;86/868183/Tg/3&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; levels are correlated with the volume of thyroid tissue, we can also estimate the mass of thyroid tissue to detect &#039;&#039;&#039;hyperthyroidism&#039;&#039;&#039;, a disease related to an enlarged thyroid or, conversely, &#039;&#039;&#039;hypothyroidism&#039;&#039;&#039;.&lt;br /&gt;
 &lt;br /&gt;
For example, [https://en.wikipedia.org/wiki/Thyroidectomy  thyroidectomy] and a iodine-131 therapy can be performed to cure thyroid cancer with an 80% chance. Following removal and iodine-131 therapy, thyroglobulin is this time produced by malignant thyrocytes. As a result, its blood level is indistinguishable from that of a healthy person. &amp;lt;ref&amp;gt;PMID: 762873&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 21649472&amp;lt;/ref&amp;gt;&lt;br /&gt;
But in case of recurrence and persistence of cancer, its level can increase again. Thyroglobulin therefore always serves as a tumor marker allowing us to estimate the risk of recurrence (&amp;gt;2ng/ml) or persistence (&amp;gt;1ng/ml) or remission.&amp;lt;ref&amp;gt;DOI 10.1677/ERC-10-0292&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
== References ==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Antoine Lambert</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_1650&amp;diff=3502678</id>
		<title>Sandbox Reserved 1650</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_1650&amp;diff=3502678"/>
		<updated>2022-01-17T16:09:45Z</updated>

		<summary type="html">&lt;p&gt;Antoine Lambert: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;{{Sandbox_Reserved_ESBS20_}}&amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
== Human thyroglobulin (TG) ==&lt;br /&gt;
&amp;lt;StructureSection load=&#039;6scj&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;Human thyroglobulin&#039; scene=&#039;&#039;&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Introduction&#039;&#039;&#039;&lt;br /&gt;
[https://en.wikipedia.org/wiki/Thyroglobulin Human thyroglobulin (TG)] is a precursor of two  [https://en.wikipedia.org/wiki/Thyroid_hormones thyroid hormones] (TH): tetraiodothyronine or [[thyroxine]] (T4) and [[triiodothyronine (T3)]], essential for &#039;&#039;&#039;growth&#039;&#039;&#039;, &#039;&#039;&#039;development&#039;&#039;&#039; and the &#039;&#039;&#039;control of metabolism&#039;&#039;&#039;. Its structure is essential for the diagnosis, treatment and monitoring of thyroid-related diseases.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== Composition and 3D structure &amp;lt;ref&amp;gt;DOI 32025030&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
=== Global structure === &lt;br /&gt;
&#039;&#039;&#039;Human thyroglobulin&#039;&#039;&#039; is a dimeric glycoprotein (see a &amp;lt;scene name=&#039;86/868183/Monomer_tg/1&#039;&amp;gt;monomer&amp;lt;/scene&amp;gt;) consisting of 2 times &#039;&#039;&#039;2749 amino acid residues&#039;&#039;&#039; with a molecular weight of &#039;&#039;&#039;660 kDa&#039;&#039;&#039;. The average size of the dimer is &#039;&#039;&#039;120x235 Å&#039;&#039;&#039;. &lt;br /&gt;
 &lt;br /&gt;
Each of its monomers comprises &#039;&#039;&#039;5 distinct regions&#039;&#039;&#039; on which approximately 66 &amp;lt;scene name=&#039;86/868183/Tyr/1&#039;&amp;gt;tyrosines&amp;lt;/scene&amp;gt; (chain A in blue, chain B in green, chain C in dark red, chain D in light red) are distributed. These are the regions : &lt;br /&gt;
&amp;lt;scene name=&#039;86/868183/Ntd/6&#039;&amp;gt;N-terminal domain (NTD)&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=MuFHlCZCetU&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=5&amp;gt;NTD]], &amp;lt;scene name=&#039;86/868183/Core/4&#039;&amp;gt;Core&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=Lx1G1KGxKN8&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=8&amp;gt;CORE]], &amp;lt;scene name=&#039;86/868183/Flap/4&#039;&amp;gt;Flap&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=vk60Rdyo28A&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=6&amp;gt;FLAP]], &amp;lt;scene name=&#039;86/868183/Arm/3&#039;&amp;gt;Arm&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=XzeTjQKfO0E&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=9&amp;gt;ARM]] and &amp;lt;scene name=&#039;86/868183/Ctd/4&#039;&amp;gt;C-Terminal Domain (CTD)&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=N-mg_xj-deI&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=7&amp;gt;CTD]].&lt;br /&gt;
&lt;br /&gt;
The &amp;lt;scene name=&#039;86/868183/Ctd/4&#039;&amp;gt;carboxyl-terminal domain&amp;lt;/scene&amp;gt; of TG (about 520 amino acids) shows homology with the [[Acetylcholinesterase]] and other esterases.&lt;br /&gt;
&lt;br /&gt;
In addition, &amp;lt;scene name=&#039;86/868183/Tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; has about 120 cysteine residues allowing the formation of about 60 &amp;lt;scene name=&#039;86/868183/Ssbonds/1&#039;&amp;gt;disulfide bridge bonds&amp;lt;/scene&amp;gt; per &amp;lt;scene name=&#039;86/868183/Monomer_tg/1&#039;&amp;gt;monomer&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=Nuryu1aSqvY&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=11&amp;gt;Disulfide bridge]]. It confers great stability and solubility.&lt;br /&gt;
&lt;br /&gt;
These enzymes belong to the class of α-β hydrolase fold superfamily, characterized by α–helices and β-strands that roughly alternate along the polypeptide chain.&amp;lt;ref name=&amp;quot;jeso&amp;quot;&amp;gt;DOI 26595189&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Structure of hormonogenic sites ===&lt;br /&gt;
&#039;&#039;&#039;Hormonogenic sites&#039;&#039;&#039; are substrates for TH formation. They are formed by 2 or even 3 tyrosines at less than 15 Å from each other, and exposed to the solvent. Of these tyrosines, 1 or 2 are acceptors and 1 is a donor. &lt;br /&gt;
 &lt;br /&gt;
There are 4 hormonogenic sites for &amp;lt;scene name=&#039;86/868183/Tg/3&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; :&lt;br /&gt;
&lt;br /&gt;
- an &amp;lt;scene name=&#039;86/868183/Site_a/2&#039;&amp;gt;A site&amp;lt;/scene&amp;gt;, comprising two fixed donor tyrosines Y234 and Y149 and one flexible acceptor tyrosine: Y24 [[https://www.youtube.com/watch?v=98MKFRc6S_w&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=4&amp;gt;Site A]].&lt;br /&gt;
&lt;br /&gt;
- a &amp;lt;scene name=&#039;86/868183/Site_b/4&#039;&amp;gt;B site&amp;lt;/scene&amp;gt;, including one Y2573 donor and one Y2540 acceptor [[https://www.youtube.com/watch?v=aNd32NLk9Fk&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=3&amp;gt;Site B]].&lt;br /&gt;
&lt;br /&gt;
- a &#039;&#039;&#039;C site&#039;&#039;&#039;, comprising both donor and acceptor tyrosine Y2766 (not resolved in the map).&lt;br /&gt;
&lt;br /&gt;
- a &amp;lt;scene name=&#039;86/868183/Site_d/1&#039;&amp;gt;D site&amp;lt;/scene&amp;gt;, comprising a Y108 donor and a Y1310 acceptor [[https://www.youtube.com/watch?v=JYUPk59lVVw&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=2&amp;gt;Site D]].&lt;br /&gt;
 &lt;br /&gt;
An acidic Asp (aspartic acid) or Glu (glutamic acid) residue always precedes the acceptor and a lysine is always close to the donor.  &lt;br /&gt;
Except for site C, donors are at the fixed regions of the dimer while acceptors are at the flexible regions.&lt;br /&gt;
&lt;br /&gt;
== Synthesis&amp;lt;!-- &amp;lt;ref&amp;gt;PMID: 3681978&amp;lt;/ref&amp;gt; &amp;lt;ref&amp;gt;DOI 11581009&amp;lt;/ref&amp;gt; --&amp;gt;&amp;lt;ref&amp;gt;DOI 11479128&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;PMID: 6895876&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 3016640&amp;lt;/ref&amp;gt; and acquisition of its structure ==&lt;br /&gt;
=== Role and composition of the thyroid gland ===&lt;br /&gt;
&lt;br /&gt;
The [https://en.wikipedia.org/wiki/Thyroid/ thyroid] gland is an endocrine organ located in the neck that secretes thyroid hormones into the bloodstream. Among them, T4 and T3 are involved in the growth, development and regulation of the metabolism of vertebrates.&lt;br /&gt;
&lt;br /&gt;
The [https://en.wikipedia.org/wiki/Thyroid/ thyroid] gland is made up of thyroid vesicles, which are made up of thyroid follicular cells that are arranged around a lumen containing a viscous substance called colloid. The diet is a source of iodide I- ions which, once in the blood, are picked up by the thyroid cells and then partly discharged into the colloid.&lt;br /&gt;
&lt;br /&gt;
=== Expression of the TG gene===&lt;br /&gt;
In  humans, TG is coded by a large gene roughly &#039;&#039;&#039;300 kb long&#039;&#039;&#039;, located on chromosome 8. The number of exons has been estimated to be around 48, each of which is separated by introns varying in size up to 64 kb. TG gene expresion is controlled positively  by &#039;&#039;&#039;thyro-tropin (TSH)&#039;&#039;&#039; through the modulation of the intra-cellular levels of &#039;&#039;&#039;cyclic adenosine monophosphate (cAMP)&#039;&#039;&#039; via its receptor (TSHr) located at the basal membrane of the cell.&amp;lt;ref&amp;gt;PMID: 11581009&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Post-translational modifications ===&lt;br /&gt;
TG also undergoes N-glycosylations in the [https://en.wikipedia.org/wiki/Endoplasmic_reticulum endoplasmic reticulum] at &amp;lt;scene name=&#039;86/868183/Glycosylation_sites/1&#039;&amp;gt;17 glycosylation sites&amp;lt;/scene&amp;gt;, so that 10% of its molecular weight is carbohydrate. TG also undergoes maturation steps in this organelle, where it acquires dilsufide-bonds. These modifications enhance its stability and solubility. Indeed, the two monomers are linked not by covalent interactions but via numerous interactions allowed by these N-glycosylations.&lt;br /&gt;
&lt;br /&gt;
=== Folding ===&lt;br /&gt;
Once synthesized, the acquisition of the 3D structure of the &amp;lt;scene name=&#039;86/868183/Full_tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=ZKZy3sVNYAo&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;gt;TG]] is enabled by the ER chaperone proteins of the thyroid follicular cells via a slow process &amp;lt;ref&amp;gt;DOI 10.1042/BJ20021257&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
== Functions ==&lt;br /&gt;
=== TH synthesis ===&lt;br /&gt;
==== Mechanism ====&lt;br /&gt;
Once their 3D structure is acquired, TGs are exported into the colloid by exocytosis thanks to their signal peptide which will be cleaved. This extracellular storage increases the amount of TG stored in the body. &lt;br /&gt;
 &lt;br /&gt;
In the colloid, about &#039;&#039;&#039;30 tyrosines&#039;&#039;&#039; out of the &#039;&#039;&#039;66 tyrosines&#039;&#039;&#039;, each consisting of a phenol group, are iodized. The quantity of iodinated tyrosine depends however on the iodide concentration of the colloid. Indeed, one or two iodide ions can be covalently bound to the colloid and thus give a &#039;&#039;&#039;di- (DIT)&#039;&#039;&#039; or &#039;&#039;&#039;mono-iodinated (MIT) phenol group&#039;&#039;&#039;. The iodination of the phenol groups is carried out by two membrane enzymes of the follicular cells: the double oxidase (&#039;&#039;&#039;DUOX&#039;&#039;&#039;) synthesizes the hydrogen peroxide H2O2 necessary for thyroid peroxidase (&#039;&#039;&#039;TPO&#039;&#039;&#039;). The synthesis is completed by TG proteolysis. &lt;br /&gt;
 &lt;br /&gt;
Due to the spatial conformation of &amp;lt;scene name=&#039;86/868183/Tg/3&#039;&amp;gt;TG&amp;lt;/scene&amp;gt;, there is a transfer of di- or mono-iodinated aromatic ring from a donor tyrosine to a close acceptor diiodotyrosine for the 14 tyrosines of the hormonogenic sites. Acceptor iodinated tyrosines are DITs because they are deprotonated due to their 6.5 acid pka facilitating the acceptance reaction leading to the formation of quinol-ether bonds, whereas donor iodinated tyrosines are MITs with a pKa of 8.5&amp;lt;ref&amp;gt;DOI 10.1530/eje.0.1380227&amp;lt;/ref&amp;gt;.&lt;br /&gt;
 &lt;br /&gt;
At the end of the coupling, the donor tyrosines are left with a dehydroalanine.&lt;br /&gt;
 &lt;br /&gt;
Once iodization and coupling have been performed, endocytosis of the colloid to the lysosome occurs. The &amp;lt;scene name=&#039;86/868183/Tg/3&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; is proteolyzed by cathepsin proteases&amp;lt;ref&amp;gt;DOI 1939080&amp;lt;/ref&amp;gt; and 7 TH are thus released from 14 mono- or di-iodinated tyrosines.&lt;br /&gt;
 &lt;br /&gt;
The hormone synthesis function of TG is thus particularly linked to its structure. Moreover, research shows that denaturation or a simple modification of its conformation prevents the formation of TH &amp;lt;ref&amp;gt;PMID:4710237&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 456595&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
==== Control ====&lt;br /&gt;
The synthesis of TH from TG is stimulated by thyroid stimulating hormone (TSH) secreted by the pituitary gland, a gland of the brain. When the TSH receptor is activated, glycosylations leading to the mono iodination of tyrosines promote the synthesis of T3&amp;lt;ref&amp;gt;DOI  3182849&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;PMID: 1370485&amp;lt;/ref&amp;gt;.&lt;br /&gt;
On the other hand, if the amount of hormones is too high, a negative feedback is exerted on this process while a small amount of these hormones exerts a positive feedback.&lt;br /&gt;
&lt;br /&gt;
=== Iodine tank ===&lt;br /&gt;
The complex and particularly stable structure of &amp;lt;scene name=&#039;86/868183/Tg/3&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; gives it iodide reservoir properties. Indeed, all iodinated but non-hormonoid tyrosines are useful for iodine storage in the thyroid gland. &lt;br /&gt;
&lt;br /&gt;
== Interest in the medical field&amp;lt;ref&amp;gt;DOI 6814409&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 29984794&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;jeso&amp;quot;/&amp;gt; ==&lt;br /&gt;
=== Modification of the TG quantity related to the desease ===&lt;br /&gt;
A healthy subject has between &#039;&#039;&#039;5 and 25 µg of TG per liter&#039;&#039;&#039; of blood.&amp;lt;ref&amp;gt;DOI 5773064&amp;lt;/ref&amp;gt; In case of thyroid dysfunction, this level may increase or decrease. For example, it decreases in the case of congenital athyreosis (insufficiency of the thyroid gland) or prior to a miscarriage due to the presence of anti-TG antibodies, but increases in the case of cancer, thyroiditis, inflammation of the thyroid or autoimmune thyroid diseases &#039;&#039;&#039;AITD&#039;&#039;&#039; &amp;lt;ref&amp;gt;DOI 24147207&amp;lt;/ref&amp;gt;(Grave&#039;s disease, Hashimoto&#039;s thyroiditis).&amp;lt;ref&amp;gt;DOI 11788684&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 17614775&amp;lt;/ref&amp;gt;&lt;br /&gt;
 &lt;br /&gt;
In addition, a decrease in the size or capacity of the thyroid causes a decrease in the synthesis of TH by the &amp;lt;scene name=&#039;86/868183/Tg/3&#039;&amp;gt;TG&amp;lt;/scene&amp;gt;, and thus a drop in the blood level of T4 and T3, which in turn causes heart disease, brain disease and abnormalities in the development of the fetus. &amp;lt;ref&amp;gt;DOI 29246752&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 28593684&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 12721190&amp;lt;/ref&amp;gt;&lt;br /&gt;
 &lt;br /&gt;
The variation of the quantity of TG can thus be as much a cause as a consequence of disease.&amp;lt;ref&amp;gt;DOI 17201802&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Use of TG to treat deseases ===&lt;br /&gt;
A classic &#039;&#039;&#039;TSH-stimulated&#039;&#039;&#039; &amp;lt;scene name=&#039;86/868183/Tg/3&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; measurement or ultrasensitive &amp;lt;scene name=&#039;86/868183/Tg/4&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; measurement allows to control its rate in a more or less sensitive way and therefore to detect a disease like those mentioned above, to ensure the effectiveness of a treatment and the absence of recurrence and to avoid&lt;br /&gt;
miscarriages.&amp;lt;ref&amp;gt;DOI 3681445&amp;lt;/ref&amp;gt;&lt;br /&gt;
Since serum &amp;lt;scene name=&#039;86/868183/Tg/3&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; levels are correlated with the volume of thyroid tissue, we can also estimate the mass of thyroid tissue to detect &#039;&#039;&#039;hyperthyroidism&#039;&#039;&#039;, a disease related to an enlarged thyroid or, conversely, &#039;&#039;&#039;hypothyroidism&#039;&#039;&#039;.&lt;br /&gt;
 &lt;br /&gt;
For example, [https://en.wikipedia.org/wiki/Thyroidectomy  thyroidectomy] and a iodine-131 therapy can be performed to cure thyroid cancer with an 80% chance. Following removal and iodine-131 therapy, thyroglobulin is this time produced by malignant thyrocytes. As a result, its blood level is indistinguishable from that of a healthy person. &amp;lt;ref&amp;gt;PMID: 762873&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 21649472&amp;lt;/ref&amp;gt;&lt;br /&gt;
But in case of recurrence and persistence of cancer, its level can increase again. Thyroglobulin therefore always serves as a tumor marker allowing us to estimate the risk of recurrence (&amp;gt;2ng/ml) or persistence (&amp;gt;1ng/ml) or remission.&amp;lt;ref&amp;gt;DOI 10.1677/ERC-10-0292&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
== References ==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Antoine Lambert</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_1650&amp;diff=3502677</id>
		<title>Sandbox Reserved 1650</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_1650&amp;diff=3502677"/>
		<updated>2022-01-17T16:05:46Z</updated>

		<summary type="html">&lt;p&gt;Antoine Lambert: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;{{Sandbox_Reserved_ESBS20_}}&amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
== Human thyroglobulin (TG) ==&lt;br /&gt;
&amp;lt;StructureSection load=&#039;6scj&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;Human thyroglobulin&#039; scene=&#039;&#039;&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Introduction&#039;&#039;&#039;&lt;br /&gt;
[https://en.wikipedia.org/wiki/Thyroglobulin Human thyroglobulin (TG)] is a precursor of two  [https://en.wikipedia.org/wiki/Thyroid_hormones thyroid hormones] (TH): tetraiodothyronine or [[thyroxine]] (T4) and [[triiodothyronine (T3)]], essential for &#039;&#039;&#039;growth&#039;&#039;&#039;, &#039;&#039;&#039;development&#039;&#039;&#039; and the &#039;&#039;&#039;control of metabolism&#039;&#039;&#039;. Its structure is essential for the diagnosis, treatment and monitoring of thyroid-related diseases.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== Composition and 3D structure &amp;lt;ref&amp;gt;DOI 32025030&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
=== Global structure === &lt;br /&gt;
&#039;&#039;&#039;Human thyroglobulin&#039;&#039;&#039; is a dimeric glycoprotein (see a &amp;lt;scene name=&#039;86/868183/Monomer_tg/1&#039;&amp;gt;monomer&amp;lt;/scene&amp;gt;) consisting of 2 times &#039;&#039;&#039;2749 amino acid residues&#039;&#039;&#039; with a molecular weight of &#039;&#039;&#039;660 kDa&#039;&#039;&#039;. The average size of the dimer is &#039;&#039;&#039;120x235 Å&#039;&#039;&#039;. &lt;br /&gt;
 &lt;br /&gt;
Each of its monomers comprises &#039;&#039;&#039;5 distinct regions&#039;&#039;&#039; on which approximately 66 &amp;lt;scene name=&#039;86/868183/Tyr/1&#039;&amp;gt;tyrosines&amp;lt;/scene&amp;gt; (chain A in blue, chain B in green, chain C in dark red, chain D in light red) are distributed. These are the regions : &lt;br /&gt;
&amp;lt;scene name=&#039;86/868183/Ntd/6&#039;&amp;gt;N-terminal domain (NTD)&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=MuFHlCZCetU&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=5&amp;gt;NTD]], &amp;lt;scene name=&#039;86/868183/Core/4&#039;&amp;gt;Core&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=Lx1G1KGxKN8&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=8&amp;gt;CORE]], &amp;lt;scene name=&#039;86/868183/Flap/4&#039;&amp;gt;Flap&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=vk60Rdyo28A&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=6&amp;gt;FLAP]], &amp;lt;scene name=&#039;86/868183/Arm/3&#039;&amp;gt;Arm&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=XzeTjQKfO0E&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=9&amp;gt;ARM]] and &amp;lt;scene name=&#039;86/868183/Ctd/4&#039;&amp;gt;C-Terminal Domain (CTD)&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=N-mg_xj-deI&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=7&amp;gt;CTD]].&lt;br /&gt;
&lt;br /&gt;
The &amp;lt;scene name=&#039;86/868183/Ctd/4&#039;&amp;gt;carboxyl-terminal domain&amp;lt;/scene&amp;gt; of TG (about 520 amino acids) shows homology with the [[Acetylcholinesterase]] and other esterases.&lt;br /&gt;
&lt;br /&gt;
In addition, &amp;lt;scene name=&#039;86/868183/Tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; has about 120 cysteine residues allowing the formation of about 60 &amp;lt;scene name=&#039;86/868183/Ssbonds/1&#039;&amp;gt;disulfide bridge bonds&amp;lt;/scene&amp;gt; per &amp;lt;scene name=&#039;86/868183/Monomer_tg/1&#039;&amp;gt;monomer&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=Nuryu1aSqvY&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=11&amp;gt;Disulfide bridge]]. It confers great stability and solubility.&lt;br /&gt;
&lt;br /&gt;
These enzymes belong to the class of α-β hydrolase fold superfamily, characterized by α–helices and β-strands that roughly alternate along the polypeptide chain.&amp;lt;ref name=&amp;quot;jeso&amp;quot;&amp;gt;DOI 26595189&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Structure of hormonogenic sites ===&lt;br /&gt;
&#039;&#039;&#039;Hormonogenic sites&#039;&#039;&#039; are substrates for TH formation. They are formed by 2 or even 3 tyrosines at less than 15 Å from each other, and exposed to the solvent. Of these tyrosines, 1 or 2 are acceptors and 1 is a donor. &lt;br /&gt;
 &lt;br /&gt;
There are 4 hormonogenic sites for &amp;lt;scene name=&#039;86/868183/Tg/3&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; :&lt;br /&gt;
&lt;br /&gt;
- an &amp;lt;scene name=&#039;86/868183/Site_a/2&#039;&amp;gt;A site&amp;lt;/scene&amp;gt;, comprising two fixed donor tyrosines Y234 and Y149 and one flexible acceptor tyrosine: Y24 [[https://www.youtube.com/watch?v=98MKFRc6S_w&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=4&amp;gt;Site A]].&lt;br /&gt;
&lt;br /&gt;
- a &amp;lt;scene name=&#039;86/868183/Site_b/4&#039;&amp;gt;B site&amp;lt;/scene&amp;gt;, including one Y2573 donor and one Y2540 acceptor [[https://www.youtube.com/watch?v=aNd32NLk9Fk&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=3&amp;gt;Site B]].&lt;br /&gt;
&lt;br /&gt;
- a &#039;&#039;&#039;C site&#039;&#039;&#039;, comprising both donor and acceptor tyrosine Y2766 (not resolved in the map).&lt;br /&gt;
&lt;br /&gt;
- a &amp;lt;scene name=&#039;86/868183/Site_d/1&#039;&amp;gt;D site&amp;lt;/scene&amp;gt;, comprising a Y108 donor and a Y1310 acceptor [[https://www.youtube.com/watch?v=JYUPk59lVVw&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=2&amp;gt;Site D]].&lt;br /&gt;
 &lt;br /&gt;
An acidic Asp (aspartic acid) or Glu (glutamic acid) residue always precedes the acceptor and a lysine is always close to the donor.  &lt;br /&gt;
Except for site C, donors are at the fixed regions of the dimer while acceptors are at the flexible regions.&lt;br /&gt;
&lt;br /&gt;
== Synthesis&amp;lt;!-- &amp;lt;ref&amp;gt;PMID: 3681978&amp;lt;/ref&amp;gt; &amp;lt;ref&amp;gt;DOI 11581009&amp;lt;/ref&amp;gt; --&amp;gt;&amp;lt;ref&amp;gt;DOI 11479128&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;PMID: 6895876&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 3016640&amp;lt;/ref&amp;gt; and acquisition of its structure ==&lt;br /&gt;
=== Role and composition of the thyroid gland ===&lt;br /&gt;
&lt;br /&gt;
The [https://en.wikipedia.org/wiki/Thyroid/ thyroid] gland is an endocrine organ located in the neck that secretes thyroid hormones into the bloodstream. Among them, T4 and T3 are involved in the growth, development and regulation of the metabolism of vertebrates.&lt;br /&gt;
&lt;br /&gt;
The [https://en.wikipedia.org/wiki/Thyroid/ thyroid] gland is made up of thyroid vesicles, which are made up of thyroid follicular cells that are arranged around a lumen containing a viscous substance called colloid. The diet is a source of iodide I- ions which, once in the blood, are picked up by the thyroid cells and then partly discharged into the colloid.&lt;br /&gt;
&lt;br /&gt;
=== Expression of the TG gene===&lt;br /&gt;
In  humans, TG is coded by a large gene roughly &#039;&#039;&#039;300 kb long&#039;&#039;&#039;, located on chromosome 8. The number of exons has been estimated to be around 48, each of which is separated by introns varying in size up to 64 kb. TG gene expresion is controlled positively  by &#039;&#039;&#039;thyro-tropin (TSH)&#039;&#039;&#039; through the modulation of the intra-cellular levels of &#039;&#039;&#039;cyclic adenosine monophosphate (cAMP)&#039;&#039;&#039; via its receptor (TSHr) located at the basal membrane of the cell.&amp;lt;ref&amp;gt;PMID: 11581009&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Post-translational modifications ===&lt;br /&gt;
TG also undergoes N-glycosylations in the [https://en.wikipedia.org/wiki/Endoplasmic_reticulum endoplasmic reticulum] at &amp;lt;scene name=&#039;86/868183/Glycosylation_sites/1&#039;&amp;gt;17 glycosylation sites&amp;lt;/scene&amp;gt;, so that 10% of its molecular weight is carbohydrate. TG also undergoes maturation steps in this organelle, where it acquires dilsufide-bonds. These modifications enhance its stability and solubility. Indeed, the two monomers are linked not by covalent interactions but via numerous interactions allowed by these N-glycosylations.&lt;br /&gt;
&lt;br /&gt;
=== Folding ===&lt;br /&gt;
Once synthesized, the acquisition of the 3D structure of the &amp;lt;scene name=&#039;86/868183/Full_tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=ZKZy3sVNYAo&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;gt;TG]] is enabled by the ER chaperone proteins of the thyroid follicular cells via a slow process &amp;lt;ref&amp;gt;DOI 10.1042/BJ20021257&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
== Functions ==&lt;br /&gt;
=== TH synthesis ===&lt;br /&gt;
==== Mechanism ====&lt;br /&gt;
Once their 3D structure is acquired, TGs are exported into the colloid by exocytosis thanks to their signal peptide which will be cleaved. This extracellular storage increases the amount of TG stored in the body. &lt;br /&gt;
 &lt;br /&gt;
In the colloid, about &#039;&#039;&#039;30 tyrosines&#039;&#039;&#039; out of the &#039;&#039;&#039;66 tyrosines&#039;&#039;&#039;, each consisting of a phenol group, are iodized. The quantity of iodinated tyrosine depends however on the iodide concentration of the colloid. Indeed, one or two iodide ions can be covalently bound to the colloid and thus give a &#039;&#039;&#039;di- (DIT)&#039;&#039;&#039; or &#039;&#039;&#039;mono-iodinated (MIT) phenol group&#039;&#039;&#039;. The iodination of the phenol groups is carried out by two membrane enzymes of the follicular cells: the double oxidase (&#039;&#039;&#039;DUOX&#039;&#039;&#039;) synthesizes the hydrogen peroxide H2O2 necessary for thyroid peroxidase (&#039;&#039;&#039;TPO&#039;&#039;&#039;). The synthesis is completed by TG proteolysis. &lt;br /&gt;
 &lt;br /&gt;
Due to the spatial conformation of &amp;lt;scene name=&#039;86/868183/Tg/3&#039;&amp;gt;TG&amp;lt;/scene&amp;gt;, there is a transfer of di- or mono-iodinated aromatic ring from a donor tyrosine to a close acceptor diiodotyrosine for the 14 tyrosines of the hormonogenic sites. Acceptor iodinated tyrosines are DITs because they are deprotonated due to their 6.5 acid pka facilitating the acceptance reaction leading to the formation of quinol-ether bonds, whereas donor iodinated tyrosines are MITs with a pKa of 8.5&amp;lt;ref&amp;gt;DOI 10.1530/eje.0.1380227&amp;lt;/ref&amp;gt;.&lt;br /&gt;
 &lt;br /&gt;
At the end of the coupling, the donor tyrosines are left with a dehydroalanine.&lt;br /&gt;
 &lt;br /&gt;
Once iodization and coupling have been performed, endocytosis of the colloid to the lysosome occurs. The &amp;lt;scene name=&#039;86/868183/Tg/3&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; is proteolyzed by cathepsin proteases&amp;lt;ref&amp;gt;DOI 1939080&amp;lt;/ref&amp;gt; and 7 TH are thus released from 14 mono- or di-iodinated tyrosines.&lt;br /&gt;
 &lt;br /&gt;
The hormone synthesis function of TG is thus particularly linked to its structure. Moreover, research shows that denaturation or a simple modification of its conformation prevents the formation of TH &amp;lt;ref&amp;gt;PMID:4710237&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 456595&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
==== Control ====&lt;br /&gt;
The synthesis of TH from TG is stimulated by thyroid stimulating hormone (TSH) secreted by the pituitary gland, a gland of the brain. When the TSH receptor is activated, glycosylations leading to the mono iodination of tyrosines promote the synthesis of T3&amp;lt;ref&amp;gt;DOI  3182849&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;PMID: 1370485&amp;lt;/ref&amp;gt;.&lt;br /&gt;
On the other hand, if the amount of hormones is too high, a negative feedback is exerted on this process while a small amount of these hormones exerts a positive feedback.&lt;br /&gt;
&lt;br /&gt;
=== Iodine tank ===&lt;br /&gt;
The complex and particularly stable structure of &amp;lt;scene name=&#039;86/868183/Tg/3&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; gives it iodide reservoir properties. Indeed, all iodinated but non-hormonoid tyrosines are useful for iodine storage in the thyroid gland. &lt;br /&gt;
&lt;br /&gt;
== Interest in the medical field&amp;lt;ref&amp;gt;DOI 6814409&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 29984794&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;jeso&amp;quot;/&amp;gt; ==&lt;br /&gt;
=== Modification of the TG quantity related to the desease ===&lt;br /&gt;
A healthy subject has between &#039;&#039;&#039;5 and 25 µg of TG per liter&#039;&#039;&#039; of blood.&amp;lt;ref&amp;gt;DOI 5773064&amp;lt;/ref&amp;gt; In case of thyroid dysfunction, this level may increase or decrease. For example, it decreases in the case of congenital athyreosis (insufficiency of the thyroid gland) or prior to a miscarriage due to the presence of anti-TG antibodies, but increases in the case of cancer, thyroiditis, inflammation of the thyroid or autoimmune thyroid diseases &#039;&#039;&#039;AITD&#039;&#039;&#039; &amp;lt;ref&amp;gt;DOI 24147207&amp;lt;/ref&amp;gt;(Grave&#039;s disease, Hashimoto&#039;s thyroiditis).&amp;lt;ref&amp;gt;DOI 11788684&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 17614775&amp;lt;/ref&amp;gt;&lt;br /&gt;
 &lt;br /&gt;
In addition, a decrease in the size or capacity of the thyroid causes a decrease in the synthesis of TH by the &amp;lt;scene name=&#039;86/868183/Tg/3&#039;&amp;gt;TG&amp;lt;/scene&amp;gt;, and thus a drop in the blood level of T4 and T3, which in turn causes heart disease, brain disease and abnormalities in the development of the fetus. &amp;lt;ref&amp;gt;DOI 29246752&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 28593684&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 12721190&amp;lt;/ref&amp;gt;&lt;br /&gt;
 &lt;br /&gt;
The variation of the quantity of TG can thus be as much a cause as a consequence of disease.&amp;lt;ref&amp;gt;DOI 17201802&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Use of TG to treat deseases ===&lt;br /&gt;
A classic &#039;&#039;&#039;TSH-stimulated&#039;&#039;&#039; &amp;lt;scene name=&#039;86/868183/Tg/3&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; measurement or ultrasensitive &amp;lt;scene name=&#039;86/868183/Tg/3&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; measurement allows to control its rate in a more or less sensitive way and therefore to detect a disease like those mentioned above, to ensure the effectiveness of a treatment and the absence of recurrence and to avoid&lt;br /&gt;
miscarriages.&amp;lt;ref&amp;gt;DOI 3681445&amp;lt;/ref&amp;gt;&lt;br /&gt;
Since serum &amp;lt;scene name=&#039;86/868183/Tg/3&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; levels are correlated with the volume of thyroid tissue, we can also estimate the mass of thyroid tissue to detect &#039;&#039;&#039;hyperthyroidism&#039;&#039;&#039;, a disease related to an enlarged thyroid or, conversely, &#039;&#039;&#039;hypothyroidism&#039;&#039;&#039;.&lt;br /&gt;
 &lt;br /&gt;
For example, [https://en.wikipedia.org/wiki/Thyroidectomy  thyroidectomy] and a iodine-131 therapy can be performed to cure thyroid cancer with an 80% chance. Following removal and iodine-131 therapy, thyroglobulin is this time produced by malignant thyrocytes. As a result, its blood level is indistinguishable from that of a healthy person. &amp;lt;ref&amp;gt;PMID: 762873&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 21649472&amp;lt;/ref&amp;gt;&lt;br /&gt;
But in case of recurrence and persistence of cancer, its level can increase again. Thyroglobulin therefore always serves as a tumor marker allowing us to estimate the risk of recurrence (&amp;gt;2ng/ml) or persistence (&amp;gt;1ng/ml) or remission.&amp;lt;ref&amp;gt;DOI 10.1677/ERC-10-0292&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
== References ==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Antoine Lambert</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_1650&amp;diff=3502676</id>
		<title>Sandbox Reserved 1650</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_1650&amp;diff=3502676"/>
		<updated>2022-01-17T15:52:42Z</updated>

		<summary type="html">&lt;p&gt;Antoine Lambert: replace ntd&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;{{Sandbox_Reserved_ESBS20_}}&amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
== Human thyroglobulin (TG) ==&lt;br /&gt;
&amp;lt;StructureSection load=&#039;6scj&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;Human thyroglobulin&#039; scene=&#039;&#039;&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Introduction&#039;&#039;&#039;&lt;br /&gt;
[https://en.wikipedia.org/wiki/Thyroglobulin Human thyroglobulin (TG)] is a precursor of two  [https://en.wikipedia.org/wiki/Thyroid_hormones thyroid hormones] (TH): tetraiodothyronine or [[thyroxine]] (T4) and [[triiodothyronine (T3)]], essential for &#039;&#039;&#039;growth&#039;&#039;&#039;, &#039;&#039;&#039;development&#039;&#039;&#039; and the &#039;&#039;&#039;control of metabolism&#039;&#039;&#039;. Its structure is essential for the diagnosis, treatment and monitoring of thyroid-related diseases.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== Composition and 3D structure &amp;lt;ref&amp;gt;DOI 32025030&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
=== Global structure === &lt;br /&gt;
&#039;&#039;&#039;Human thyroglobulin&#039;&#039;&#039; is a dimeric glycoprotein (see a &amp;lt;scene name=&#039;86/868183/Monomer_tg/1&#039;&amp;gt;monomer&amp;lt;/scene&amp;gt;) consisting of 2 times &#039;&#039;&#039;2749 amino acid residues&#039;&#039;&#039; with a molecular weight of &#039;&#039;&#039;660 kDa&#039;&#039;&#039;. The average size of the dimer is &#039;&#039;&#039;120x235 Å&#039;&#039;&#039;. &lt;br /&gt;
 &lt;br /&gt;
Each of its monomers comprises &#039;&#039;&#039;5 distinct regions&#039;&#039;&#039; on which approximately 66 &amp;lt;scene name=&#039;86/868183/Tyr/1&#039;&amp;gt;tyrosines&amp;lt;/scene&amp;gt; (chain A in blue, chain B in green, chain C in dark red, chain D in light red) are distributed. These are the regions : &lt;br /&gt;
&amp;lt;scene name=&#039;86/868183/Ntd/6&#039;&amp;gt;N-terminal domain (NTD)&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=MuFHlCZCetU&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=5&amp;gt;NTD]], &amp;lt;scene name=&#039;86/868183/Core/4&#039;&amp;gt;Core&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=Lx1G1KGxKN8&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=8&amp;gt;CORE]], &amp;lt;scene name=&#039;86/868183/Flap/4&#039;&amp;gt;Flap&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=vk60Rdyo28A&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=6&amp;gt;FLAP]], &amp;lt;scene name=&#039;86/868183/Arm/3&#039;&amp;gt;Arm&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=XzeTjQKfO0E&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=9&amp;gt;ARM]] and &amp;lt;scene name=&#039;86/868183/Ctd/4&#039;&amp;gt;C-Terminal Domain (CTD)&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=N-mg_xj-deI&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=7&amp;gt;CTD]].&lt;br /&gt;
&lt;br /&gt;
The &amp;lt;scene name=&#039;86/868183/Ctd/4&#039;&amp;gt;carboxyl-terminal domain&amp;lt;/scene&amp;gt; of TG (about 520 amino acids) shows homology with the [[Acetylcholinesterase]] and other esterases.&lt;br /&gt;
&lt;br /&gt;
In addition, &amp;lt;scene name=&#039;86/868183/Tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; has about 120 cysteine residues allowing the formation of about 60 &amp;lt;scene name=&#039;86/868183/Ssbonds/1&#039;&amp;gt;disulfide bridge bonds&amp;lt;/scene&amp;gt; per &amp;lt;scene name=&#039;86/868183/Monomer_tg/1&#039;&amp;gt;monomer&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=Nuryu1aSqvY&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=11&amp;gt;Disulfide bridge]]. It confers great stability and solubility.&lt;br /&gt;
&lt;br /&gt;
These enzymes belong to the class of α-β hydrolase fold superfamily, characterized by α–helices and β-strands that roughly alternate along the polypeptide chain.&amp;lt;ref name=&amp;quot;jeso&amp;quot;&amp;gt;DOI 26595189&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Structure of hormonogenic sites ===&lt;br /&gt;
&#039;&#039;&#039;Hormonogenic sites&#039;&#039;&#039; are substrates for TH formation. They are formed by 2 or even 3 tyrosines at less than 15 Å from each other, and exposed to the solvent. Of these tyrosines, 1 or 2 are acceptors and 1 is a donor. &lt;br /&gt;
 &lt;br /&gt;
There are 4 hormonogenic sites for &amp;lt;scene name=&#039;86/868183/Tg/3&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; :&lt;br /&gt;
&lt;br /&gt;
- an &amp;lt;scene name=&#039;86/868183/Site_a/2&#039;&amp;gt;A site&amp;lt;/scene&amp;gt;, comprising two fixed donor tyrosines Y234 and Y149 and one flexible acceptor tyrosine: Y24 [[https://www.youtube.com/watch?v=98MKFRc6S_w&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=4&amp;gt;Site A]].&lt;br /&gt;
&lt;br /&gt;
- a &amp;lt;scene name=&#039;86/868183/Site_b/4&#039;&amp;gt;B site&amp;lt;/scene&amp;gt;, including one Y2573 donor and one Y2540 acceptor [[https://www.youtube.com/watch?v=aNd32NLk9Fk&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=3&amp;gt;Site B]].&lt;br /&gt;
&lt;br /&gt;
- a &#039;&#039;&#039;C site&#039;&#039;&#039;, comprising both donor and acceptor tyrosine Y2766 (not resolved in the map).&lt;br /&gt;
&lt;br /&gt;
- a &amp;lt;scene name=&#039;86/868183/Site_d/1&#039;&amp;gt;D site&amp;lt;/scene&amp;gt;, comprising a Y108 donor and a Y1310 acceptor [[https://www.youtube.com/watch?v=JYUPk59lVVw&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=2&amp;gt;Site D]].&lt;br /&gt;
 &lt;br /&gt;
An acidic Asp (aspartic acid) or Glu (glutamic acid) residue always precedes the acceptor and a lysine is always close to the donor.  &lt;br /&gt;
Except for site C, donors are at the fixed regions of the dimer while acceptors are at the flexible regions.&lt;br /&gt;
&lt;br /&gt;
== Synthesis&amp;lt;!-- &amp;lt;ref&amp;gt;PMID: 3681978&amp;lt;/ref&amp;gt; &amp;lt;ref&amp;gt;DOI 11581009&amp;lt;/ref&amp;gt; --&amp;gt;&amp;lt;ref&amp;gt;DOI 11479128&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;PMID: 6895876&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 3016640&amp;lt;/ref&amp;gt; and acquisition of its structure ==&lt;br /&gt;
=== Role and composition of the thyroid gland ===&lt;br /&gt;
&lt;br /&gt;
The [https://en.wikipedia.org/wiki/Thyroid/ thyroid] gland is an endocrine organ located in the neck that secretes thyroid hormones into the bloodstream. Among them, T4 and T3 are involved in the growth, development and regulation of the metabolism of vertebrates.&lt;br /&gt;
&lt;br /&gt;
The [https://en.wikipedia.org/wiki/Thyroid/ thyroid] gland is made up of thyroid vesicles, which are made up of thyroid follicular cells that are arranged around a lumen containing a viscous substance called colloid. The diet is a source of iodide I- ions which, once in the blood, are picked up by the thyroid cells and then partly discharged into the colloid.&lt;br /&gt;
&lt;br /&gt;
=== Expression of the TG gene===&lt;br /&gt;
In  humans, TG is coded by a large gene roughly &#039;&#039;&#039;300 kb long&#039;&#039;&#039;, located on chromosome 8. The number of exons has been estimated to be around 48, each of which is separated by introns varying in size up to 64 kb. TG gene expresion is controlled positively  by &#039;&#039;&#039;thyro-tropin (TSH)&#039;&#039;&#039; through the modulation of the intra-cellular levels of &#039;&#039;&#039;cyclic adenosine monophosphate (cAMP)&#039;&#039;&#039; via its receptor (TSHr) located at the basal membrane of the cell.&amp;lt;ref&amp;gt;PMID: 11581009&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Post-translational modifications ===&lt;br /&gt;
TG also undergoes N-glycosylations in the [https://en.wikipedia.org/wiki/Endoplasmic_reticulum/ endoplasmic reticulum] at &amp;lt;scene name=&#039;86/868183/Glycosylation_sites/1&#039;&amp;gt;17 glycosylation sites&amp;lt;/scene&amp;gt;, so that 10% of its molecular weight is carbohydrate. TG also undergoes maturation steps in this organelle, where it acquires dilsufide-bonds. These modifications enhance its stability and solubility. Indeed, the two monomers are linked not by covalent interactions but via numerous interactions allowed by these N-glycosylations.&lt;br /&gt;
&lt;br /&gt;
=== Folding ===&lt;br /&gt;
Once synthesized, the acquisition of the 3D structure of the &amp;lt;scene name=&#039;86/868183/Full_tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=ZKZy3sVNYAo&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;gt;TG]] is enabled by the ER chaperone proteins of the thyroid follicular cells via a slow process &amp;lt;ref&amp;gt;DOI 10.1042/BJ20021257&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
== Functions ==&lt;br /&gt;
=== TH synthesis ===&lt;br /&gt;
==== Mechanism ====&lt;br /&gt;
Once their 3D structure is acquired, TGs are exported into the colloid by exocytosis thanks to their signal peptide which will be cleaved. This extracellular storage increases the amount of TG stored in the body. &lt;br /&gt;
 &lt;br /&gt;
In the colloid, about &#039;&#039;&#039;30 tyrosines&#039;&#039;&#039; out of the &#039;&#039;&#039;66 tyrosines&#039;&#039;&#039;, each consisting of a phenol group, are iodized. The quantity of iodinated tyrosine depends however on the iodide concentration of the colloid. Indeed, one or two iodide ions can be covalently bound to the colloid and thus give a &#039;&#039;&#039;di- (DIT)&#039;&#039;&#039; or &#039;&#039;&#039;mono-iodinated (MIT) phenol group&#039;&#039;&#039;. The iodination of the phenol groups is carried out by two membrane enzymes of the follicular cells: the double oxidase (&#039;&#039;&#039;DUOX&#039;&#039;&#039;) synthesizes the hydrogen peroxide H2O2 necessary for thyroid peroxidase (&#039;&#039;&#039;TPO&#039;&#039;&#039;). The synthesis is completed by TG proteolysis. &lt;br /&gt;
 &lt;br /&gt;
Due to the spatial conformation of &amp;lt;scene name=&#039;86/868183/Tg/3&#039;&amp;gt;TG&amp;lt;/scene&amp;gt;, there is a transfer of di- or mono-iodinated aromatic ring from a donor tyrosine to a close acceptor diiodotyrosine for the 14 tyrosines of the hormonogenic sites. Acceptor iodinated tyrosines are DITs because they are deprotonated due to their 6.5 acid pka facilitating the acceptance reaction leading to the formation of quinol-ether bonds, whereas donor iodinated tyrosines are MITs with a pKa of 8.5&amp;lt;ref&amp;gt;DOI 10.1530/eje.0.1380227&amp;lt;/ref&amp;gt;.&lt;br /&gt;
 &lt;br /&gt;
At the end of the coupling, the donor tyrosines are left with a dehydroalanine.&lt;br /&gt;
 &lt;br /&gt;
Once iodization and coupling have been performed, endocytosis of the colloid to the lysosome occurs. The &amp;lt;scene name=&#039;86/868183/Tg/3&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; is proteolyzed by cathepsin proteases&amp;lt;ref&amp;gt;DOI 1939080&amp;lt;/ref&amp;gt; and 7 TH are thus released from 14 mono- or di-iodinated tyrosines.&lt;br /&gt;
 &lt;br /&gt;
The hormone synthesis function of TG is thus particularly linked to its structure. Moreover, research shows that denaturation or a simple modification of its conformation prevents the formation of TH &amp;lt;ref&amp;gt;PMID:4710237&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 456595&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
==== Control ====&lt;br /&gt;
The synthesis of TH from TG is stimulated by thyroid stimulating hormone (TSH) secreted by the pituitary gland, a gland of the brain. When the TSH receptor is activated, glycosylations leading to the mono iodination of tyrosines promote the synthesis of T3&amp;lt;ref&amp;gt;DOI  3182849&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;PMID: 1370485&amp;lt;/ref&amp;gt;.&lt;br /&gt;
On the other hand, if the amount of hormones is too high, a negative feedback is exerted on this process while a small amount of these hormones exerts a positive feedback.&lt;br /&gt;
&lt;br /&gt;
=== Iodine tank ===&lt;br /&gt;
The complex and particularly stable structure of &amp;lt;scene name=&#039;86/868183/Tg/3&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; gives it iodide reservoir properties. Indeed, all iodinated but non-hormonoid tyrosines are useful for iodine storage in the thyroid gland. &lt;br /&gt;
&lt;br /&gt;
== Interest in the medical field&amp;lt;ref&amp;gt;DOI 6814409&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 29984794&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;jeso&amp;quot;/&amp;gt; ==&lt;br /&gt;
=== Modification of the TG quantity related to the desease ===&lt;br /&gt;
A healthy subject has between &#039;&#039;&#039;5 and 25 µg of TG per liter&#039;&#039;&#039; of blood.&amp;lt;ref&amp;gt;DOI 5773064&amp;lt;/ref&amp;gt; In case of thyroid dysfunction, this level may increase or decrease. For example, it decreases in the case of congenital athyreosis (insufficiency of the thyroid gland) or prior to a miscarriage due to the presence of anti-TG antibodies, but increases in the case of cancer, thyroiditis, inflammation of the thyroid or autoimmune thyroid diseases &#039;&#039;&#039;AITD&#039;&#039;&#039; &amp;lt;ref&amp;gt;DOI 24147207&amp;lt;/ref&amp;gt;(Grave&#039;s disease, Hashimoto&#039;s thyroiditis).&amp;lt;ref&amp;gt;DOI 11788684&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 17614775&amp;lt;/ref&amp;gt;&lt;br /&gt;
 &lt;br /&gt;
In addition, a decrease in the size or capacity of the thyroid causes a decrease in the synthesis of TH by the &amp;lt;scene name=&#039;86/868183/Tg/3&#039;&amp;gt;TG&amp;lt;/scene&amp;gt;, and thus a drop in the blood level of T4 and T3, which in turn causes heart disease, brain disease and abnormalities in the development of the fetus. &amp;lt;ref&amp;gt;DOI 29246752&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 28593684&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 12721190&amp;lt;/ref&amp;gt;&lt;br /&gt;
 &lt;br /&gt;
The variation of the quantity of TG can thus be as much a cause as a consequence of disease.&amp;lt;ref&amp;gt;DOI 17201802&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Use of TG to treat deseases ===&lt;br /&gt;
A classic &#039;&#039;&#039;TSH-stimulated&#039;&#039;&#039; &amp;lt;scene name=&#039;86/868183/Tg/3&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; measurement or ultrasensitive &amp;lt;scene name=&#039;86/868183/Tg/3&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; measurement allows to control its rate in a more or less sensitive way and therefore to detect a disease like those mentioned above, to ensure the effectiveness of a treatment and the absence of recurrence and to avoid&lt;br /&gt;
miscarriages.&amp;lt;ref&amp;gt;DOI 3681445&amp;lt;/ref&amp;gt;&lt;br /&gt;
Since serum &amp;lt;scene name=&#039;86/868183/Tg/3&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; levels are correlated with the volume of thyroid tissue, we can also estimate the mass of thyroid tissue to detect &#039;&#039;&#039;hyperthyroidism&#039;&#039;&#039;, a disease related to an enlarged thyroid or, conversely, &#039;&#039;&#039;hypothyroidism&#039;&#039;&#039;.&lt;br /&gt;
 &lt;br /&gt;
For example, [https://en.wikipedia.org/wiki/Thyroidectomy/ thyroidectomy] and a iodine-131 therapy can be performed to cure thyroid cancer with an 80% chance. Following removal and iodine-131 therapy, thyroglobulin is this time produced by malignant thyrocytes. As a result, its blood level is indistinguishable from that of a healthy person. &amp;lt;ref&amp;gt;PMID: 762873&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 21649472&amp;lt;/ref&amp;gt;&lt;br /&gt;
But in case of recurrence and persistence of cancer, its level can increase again. Thyroglobulin therefore always serves as a tumor marker allowing us to estimate the risk of recurrence (&amp;gt;2ng/ml) or persistence (&amp;gt;1ng/ml) or remission.&amp;lt;ref&amp;gt;DOI 10.1677/ERC-10-0292&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
== References ==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Antoine Lambert</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_1650&amp;diff=3502675</id>
		<title>Sandbox Reserved 1650</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_1650&amp;diff=3502675"/>
		<updated>2022-01-17T15:42:19Z</updated>

		<summary type="html">&lt;p&gt;Antoine Lambert: disulf bond &amp;amp; ctd&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;{{Sandbox_Reserved_ESBS20_}}&amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
== Human thyroglobulin (TG) ==&lt;br /&gt;
&amp;lt;StructureSection load=&#039;6scj&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;Human thyroglobulin&#039; scene=&#039;&#039;&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Introduction&#039;&#039;&#039;&lt;br /&gt;
[https://en.wikipedia.org/wiki/Thyroglobulin Human thyroglobulin (TG)] is a precursor of two  [https://en.wikipedia.org/wiki/Thyroid_hormones thyroid hormones] (TH): tetraiodothyronine or [[thyroxine]] (T4) and [[triiodothyronine (T3)]], essential for &#039;&#039;&#039;growth&#039;&#039;&#039;, &#039;&#039;&#039;development&#039;&#039;&#039; and the &#039;&#039;&#039;control of metabolism&#039;&#039;&#039;. Its structure is essential for the diagnosis, treatment and monitoring of thyroid-related diseases.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== Composition and 3D structure &amp;lt;ref&amp;gt;DOI 32025030&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
=== Global structure === &lt;br /&gt;
&#039;&#039;&#039;Human thyroglobulin&#039;&#039;&#039; is a dimeric glycoprotein (see a &amp;lt;scene name=&#039;86/868183/Monomer_tg/1&#039;&amp;gt;monomer&amp;lt;/scene&amp;gt;) consisting of 2 times &#039;&#039;&#039;2749 amino acid residues&#039;&#039;&#039; with a molecular weight of &#039;&#039;&#039;660 kDa&#039;&#039;&#039;. The average size of the dimer is &#039;&#039;&#039;120x235 Å&#039;&#039;&#039;. &lt;br /&gt;
 &lt;br /&gt;
Each of its monomers comprises &#039;&#039;&#039;5 distinct regions&#039;&#039;&#039; on which approximately 66 &amp;lt;scene name=&#039;86/868183/Tyr/1&#039;&amp;gt;tyrosines&amp;lt;/scene&amp;gt; (chain A in blue, chain B in green, chain C in dark red, chain D in light red) are distributed. These are the regions : &lt;br /&gt;
&amp;lt;scene name=&#039;86/868183/Ntd/5&#039;&amp;gt;N-terminal domain (NTD)&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=MuFHlCZCetU&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=5&amp;gt;NTD]], &amp;lt;scene name=&#039;86/868183/Core/4&#039;&amp;gt;Core&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=Lx1G1KGxKN8&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=8&amp;gt;CORE]], &amp;lt;scene name=&#039;86/868183/Flap/4&#039;&amp;gt;Flap&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=vk60Rdyo28A&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=6&amp;gt;FLAP]], &amp;lt;scene name=&#039;86/868183/Arm/3&#039;&amp;gt;Arm&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=XzeTjQKfO0E&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=9&amp;gt;ARM]] and &amp;lt;scene name=&#039;86/868183/Ctd/4&#039;&amp;gt;C-Terminal Domain (CTD)&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=N-mg_xj-deI&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=7&amp;gt;CTD]].&lt;br /&gt;
&lt;br /&gt;
The &amp;lt;scene name=&#039;86/868183/Ctd/4&#039;&amp;gt;carboxyl-terminal domain&amp;lt;/scene&amp;gt; of TG (about 520 amino acids) shows homology with the [[Acetylcholinesterase]] and other esterases.&lt;br /&gt;
&lt;br /&gt;
In addition, &amp;lt;scene name=&#039;86/868183/Tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; has about 120 cysteine residues allowing the formation of about 60 &amp;lt;scene name=&#039;86/868183/Ssbonds/1&#039;&amp;gt;disulfide bridge bonds&amp;lt;/scene&amp;gt; per &amp;lt;scene name=&#039;86/868183/Monomer_tg/1&#039;&amp;gt;monomer&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=Nuryu1aSqvY&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=11&amp;gt;Disulfide bridge]]. It confers great stability and solubility.&lt;br /&gt;
&lt;br /&gt;
These enzymes belong to the class of α-β hydrolase fold superfamily, characterized by α–helices and β-strands that roughly alternate along the polypeptide chain.&amp;lt;ref name=&amp;quot;jeso&amp;quot;&amp;gt;DOI 26595189&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Structure of hormonogenic sites ===&lt;br /&gt;
&#039;&#039;&#039;Hormonogenic sites&#039;&#039;&#039; are substrates for TH formation. They are formed by 2 or even 3 tyrosines at less than 15 Å from each other, and exposed to the solvent. Of these tyrosines, 1 or 2 are acceptors and 1 is a donor. &lt;br /&gt;
 &lt;br /&gt;
There are 4 hormonogenic sites for &amp;lt;scene name=&#039;86/868183/Tg/3&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; :&lt;br /&gt;
&lt;br /&gt;
- an &amp;lt;scene name=&#039;86/868183/Site_a/2&#039;&amp;gt;A site&amp;lt;/scene&amp;gt;, comprising two fixed donor tyrosines Y234 and Y149 and one flexible acceptor tyrosine: Y24 [[https://www.youtube.com/watch?v=98MKFRc6S_w&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=4&amp;gt;Site A]].&lt;br /&gt;
&lt;br /&gt;
- a &amp;lt;scene name=&#039;86/868183/Site_b/4&#039;&amp;gt;B site&amp;lt;/scene&amp;gt;, including one Y2573 donor and one Y2540 acceptor [[https://www.youtube.com/watch?v=aNd32NLk9Fk&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=3&amp;gt;Site B]].&lt;br /&gt;
&lt;br /&gt;
- a &#039;&#039;&#039;C site&#039;&#039;&#039;, comprising both donor and acceptor tyrosine Y2766 (not resolved in the map).&lt;br /&gt;
&lt;br /&gt;
- a &amp;lt;scene name=&#039;86/868183/Site_d/1&#039;&amp;gt;D site&amp;lt;/scene&amp;gt;, comprising a Y108 donor and a Y1310 acceptor [[https://www.youtube.com/watch?v=JYUPk59lVVw&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=2&amp;gt;Site D]].&lt;br /&gt;
 &lt;br /&gt;
An acidic Asp (aspartic acid) or Glu (glutamic acid) residue always precedes the acceptor and a lysine is always close to the donor.  &lt;br /&gt;
Except for site C, donors are at the fixed regions of the dimer while acceptors are at the flexible regions.&lt;br /&gt;
&lt;br /&gt;
== Synthesis&amp;lt;!-- &amp;lt;ref&amp;gt;PMID: 3681978&amp;lt;/ref&amp;gt; &amp;lt;ref&amp;gt;DOI 11581009&amp;lt;/ref&amp;gt; --&amp;gt;&amp;lt;ref&amp;gt;DOI 11479128&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;PMID: 6895876&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 3016640&amp;lt;/ref&amp;gt; and acquisition of its structure ==&lt;br /&gt;
=== Role and composition of the thyroid gland ===&lt;br /&gt;
&lt;br /&gt;
The [https://en.wikipedia.org/wiki/Thyroid/ thyroid] gland is an endocrine organ located in the neck that secretes thyroid hormones into the bloodstream. Among them, T4 and T3 are involved in the growth, development and regulation of the metabolism of vertebrates.&lt;br /&gt;
&lt;br /&gt;
The [https://en.wikipedia.org/wiki/Thyroid/ thyroid] gland is made up of thyroid vesicles, which are made up of thyroid follicular cells that are arranged around a lumen containing a viscous substance called colloid. The diet is a source of iodide I- ions which, once in the blood, are picked up by the thyroid cells and then partly discharged into the colloid.&lt;br /&gt;
&lt;br /&gt;
=== Expression of the TG gene===&lt;br /&gt;
In  humans, TG is coded by a large gene roughly &#039;&#039;&#039;300 kb long&#039;&#039;&#039;, located on chromosome 8. The number of exons has been estimated to be around 48, each of which is separated by introns varying in size up to 64 kb. TG gene expresion is controlled positively  by &#039;&#039;&#039;thyro-tropin (TSH)&#039;&#039;&#039; through the modulation of the intra-cellular levels of &#039;&#039;&#039;cyclic adenosine monophosphate (cAMP)&#039;&#039;&#039; via its receptor (TSHr) located at the basal membrane of the cell.&amp;lt;ref&amp;gt;PMID: 11581009&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Post-translational modifications ===&lt;br /&gt;
TG also undergoes N-glycosylations in the [https://en.wikipedia.org/wiki/Endoplasmic_reticulum/ endoplasmic reticulum] at &amp;lt;scene name=&#039;86/868183/Glycosylation_sites/1&#039;&amp;gt;17 glycosylation sites&amp;lt;/scene&amp;gt;, so that 10% of its molecular weight is carbohydrate. TG also undergoes maturation steps in this organelle, where it acquires dilsufide-bonds. These modifications enhance its stability and solubility. Indeed, the two monomers are linked not by covalent interactions but via numerous interactions allowed by these N-glycosylations.&lt;br /&gt;
&lt;br /&gt;
=== Folding ===&lt;br /&gt;
Once synthesized, the acquisition of the 3D structure of the &amp;lt;scene name=&#039;86/868183/Full_tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=ZKZy3sVNYAo&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;gt;TG]] is enabled by the ER chaperone proteins of the thyroid follicular cells via a slow process &amp;lt;ref&amp;gt;DOI 10.1042/BJ20021257&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
== Functions ==&lt;br /&gt;
=== TH synthesis ===&lt;br /&gt;
==== Mechanism ====&lt;br /&gt;
Once their 3D structure is acquired, TGs are exported into the colloid by exocytosis thanks to their signal peptide which will be cleaved. This extracellular storage increases the amount of TG stored in the body. &lt;br /&gt;
 &lt;br /&gt;
In the colloid, about &#039;&#039;&#039;30 tyrosines&#039;&#039;&#039; out of the &#039;&#039;&#039;66 tyrosines&#039;&#039;&#039;, each consisting of a phenol group, are iodized. The quantity of iodinated tyrosine depends however on the iodide concentration of the colloid. Indeed, one or two iodide ions can be covalently bound to the colloid and thus give a &#039;&#039;&#039;di- (DIT)&#039;&#039;&#039; or &#039;&#039;&#039;mono-iodinated (MIT) phenol group&#039;&#039;&#039;. The iodination of the phenol groups is carried out by two membrane enzymes of the follicular cells: the double oxidase (&#039;&#039;&#039;DUOX&#039;&#039;&#039;) synthesizes the hydrogen peroxide H2O2 necessary for thyroid peroxidase (&#039;&#039;&#039;TPO&#039;&#039;&#039;). The synthesis is completed by TG proteolysis. &lt;br /&gt;
 &lt;br /&gt;
Due to the spatial conformation of &amp;lt;scene name=&#039;86/868183/Tg/3&#039;&amp;gt;TG&amp;lt;/scene&amp;gt;, there is a transfer of di- or mono-iodinated aromatic ring from a donor tyrosine to a close acceptor diiodotyrosine for the 14 tyrosines of the hormonogenic sites. Acceptor iodinated tyrosines are DITs because they are deprotonated due to their 6.5 acid pka facilitating the acceptance reaction leading to the formation of quinol-ether bonds, whereas donor iodinated tyrosines are MITs with a pKa of 8.5&amp;lt;ref&amp;gt;DOI 10.1530/eje.0.1380227&amp;lt;/ref&amp;gt;.&lt;br /&gt;
 &lt;br /&gt;
At the end of the coupling, the donor tyrosines are left with a dehydroalanine.&lt;br /&gt;
 &lt;br /&gt;
Once iodization and coupling have been performed, endocytosis of the colloid to the lysosome occurs. The &amp;lt;scene name=&#039;86/868183/Tg/3&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; is proteolyzed by cathepsin proteases&amp;lt;ref&amp;gt;DOI 1939080&amp;lt;/ref&amp;gt; and 7 TH are thus released from 14 mono- or di-iodinated tyrosines.&lt;br /&gt;
 &lt;br /&gt;
The hormone synthesis function of TG is thus particularly linked to its structure. Moreover, research shows that denaturation or a simple modification of its conformation prevents the formation of TH &amp;lt;ref&amp;gt;PMID:4710237&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 456595&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
==== Control ====&lt;br /&gt;
The synthesis of TH from TG is stimulated by thyroid stimulating hormone (TSH) secreted by the pituitary gland, a gland of the brain. When the TSH receptor is activated, glycosylations leading to the mono iodination of tyrosines promote the synthesis of T3&amp;lt;ref&amp;gt;DOI  3182849&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;PMID: 1370485&amp;lt;/ref&amp;gt;.&lt;br /&gt;
On the other hand, if the amount of hormones is too high, a negative feedback is exerted on this process while a small amount of these hormones exerts a positive feedback.&lt;br /&gt;
&lt;br /&gt;
=== Iodine tank ===&lt;br /&gt;
The complex and particularly stable structure of &amp;lt;scene name=&#039;86/868183/Tg/3&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; gives it iodide reservoir properties. Indeed, all iodinated but non-hormonoid tyrosines are useful for iodine storage in the thyroid gland. &lt;br /&gt;
&lt;br /&gt;
== Interest in the medical field&amp;lt;ref&amp;gt;DOI 6814409&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 29984794&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;jeso&amp;quot;/&amp;gt; ==&lt;br /&gt;
=== Modification of the TG quantity related to the desease ===&lt;br /&gt;
A healthy subject has between &#039;&#039;&#039;5 and 25 µg of TG per liter&#039;&#039;&#039; of blood.&amp;lt;ref&amp;gt;DOI 5773064&amp;lt;/ref&amp;gt; In case of thyroid dysfunction, this level may increase or decrease. For example, it decreases in the case of congenital athyreosis (insufficiency of the thyroid gland) or prior to a miscarriage due to the presence of anti-TG antibodies, but increases in the case of cancer, thyroiditis, inflammation of the thyroid or autoimmune thyroid diseases &#039;&#039;&#039;AITD&#039;&#039;&#039; &amp;lt;ref&amp;gt;DOI 24147207&amp;lt;/ref&amp;gt;(Grave&#039;s disease, Hashimoto&#039;s thyroiditis).&amp;lt;ref&amp;gt;DOI 11788684&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 17614775&amp;lt;/ref&amp;gt;&lt;br /&gt;
 &lt;br /&gt;
In addition, a decrease in the size or capacity of the thyroid causes a decrease in the synthesis of TH by the &amp;lt;scene name=&#039;86/868183/Tg/3&#039;&amp;gt;TG&amp;lt;/scene&amp;gt;, and thus a drop in the blood level of T4 and T3, which in turn causes heart disease, brain disease and abnormalities in the development of the fetus. &amp;lt;ref&amp;gt;DOI 29246752&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 28593684&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 12721190&amp;lt;/ref&amp;gt;&lt;br /&gt;
 &lt;br /&gt;
The variation of the quantity of TG can thus be as much a cause as a consequence of disease.&amp;lt;ref&amp;gt;DOI 17201802&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Use of TG to treat deseases ===&lt;br /&gt;
A classic &#039;&#039;&#039;TSH-stimulated&#039;&#039;&#039; &amp;lt;scene name=&#039;86/868183/Tg/3&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; measurement or ultrasensitive &amp;lt;scene name=&#039;86/868183/Tg/3&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; measurement allows to control its rate in a more or less sensitive way and therefore to detect a disease like those mentioned above, to ensure the effectiveness of a treatment and the absence of recurrence and to avoid&lt;br /&gt;
miscarriages.&amp;lt;ref&amp;gt;DOI 3681445&amp;lt;/ref&amp;gt;&lt;br /&gt;
Since serum &amp;lt;scene name=&#039;86/868183/Tg/3&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; levels are correlated with the volume of thyroid tissue, we can also estimate the mass of thyroid tissue to detect &#039;&#039;&#039;hyperthyroidism&#039;&#039;&#039;, a disease related to an enlarged thyroid or, conversely, &#039;&#039;&#039;hypothyroidism&#039;&#039;&#039;.&lt;br /&gt;
 &lt;br /&gt;
For example, [https://en.wikipedia.org/wiki/Thyroidectomy/ thyroidectomy] and a iodine-131 therapy can be performed to cure thyroid cancer with an 80% chance. Following removal and iodine-131 therapy, thyroglobulin is this time produced by malignant thyrocytes. As a result, its blood level is indistinguishable from that of a healthy person. &amp;lt;ref&amp;gt;PMID: 762873&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 21649472&amp;lt;/ref&amp;gt;&lt;br /&gt;
But in case of recurrence and persistence of cancer, its level can increase again. Thyroglobulin therefore always serves as a tumor marker allowing us to estimate the risk of recurrence (&amp;gt;2ng/ml) or persistence (&amp;gt;1ng/ml) or remission.&amp;lt;ref&amp;gt;DOI 10.1677/ERC-10-0292&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
== References ==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Antoine Lambert</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_1650&amp;diff=3502659</id>
		<title>Sandbox Reserved 1650</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_1650&amp;diff=3502659"/>
		<updated>2022-01-17T12:27:54Z</updated>

		<summary type="html">&lt;p&gt;Antoine Lambert: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;{{Sandbox_Reserved_ESBS20_}}&amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
== Human thyroglobulin (TG) ==&lt;br /&gt;
&amp;lt;StructureSection load=&#039;6scj&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;Human thyroglobulin&#039; scene=&#039;&#039;&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Introduction&#039;&#039;&#039;&lt;br /&gt;
[https://en.wikipedia.org/wiki/Thyroglobulin Human thyroglobulin (TG)] is a precursor of two  [https://en.wikipedia.org/wiki/Thyroid_hormones thyroid hormones] (TH): tetraiodothyronine or [[thyroxine]] (T4) and [[triiodothyronine (T3)]], essential for &#039;&#039;&#039;growth&#039;&#039;&#039;, &#039;&#039;&#039;development&#039;&#039;&#039; and the &#039;&#039;&#039;control of metabolism&#039;&#039;&#039;. Its structure is essential for the diagnosis, treatment and monitoring of thyroid-related diseases.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== Composition and 3D structure &amp;lt;ref&amp;gt;DOI 32025030&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
=== Global structure === &lt;br /&gt;
&#039;&#039;&#039;Human thyroglobulin&#039;&#039;&#039; is a dimeric glycoprotein (see a &amp;lt;scene name=&#039;86/868183/Monomer_tg/1&#039;&amp;gt;monomer&amp;lt;/scene&amp;gt;) consisting of 2 times &#039;&#039;&#039;2749 amino acid residues&#039;&#039;&#039; with a molecular weight of &#039;&#039;&#039;660 kDa&#039;&#039;&#039;. The average size of the dimer is &#039;&#039;&#039;120x235 Å&#039;&#039;&#039;. &lt;br /&gt;
 &lt;br /&gt;
Each of its monomers comprises &#039;&#039;&#039;5 distinct regions&#039;&#039;&#039; on which approximately 66 &amp;lt;scene name=&#039;86/868183/Tyr/1&#039;&amp;gt;tyrosines&amp;lt;/scene&amp;gt; (chain A in blue, chain B in green, chain C in dark red, chain D in light red) are distributed. These are the regions : &lt;br /&gt;
&amp;lt;scene name=&#039;86/868183/Ntd/5&#039;&amp;gt;N-terminal domain (NTD)&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=MuFHlCZCetU&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=5&amp;gt;NTD]], &amp;lt;scene name=&#039;86/868183/Core/4&#039;&amp;gt;Core&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=Lx1G1KGxKN8&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=8&amp;gt;CORE]], &amp;lt;scene name=&#039;86/868183/Flap/4&#039;&amp;gt;Flap&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=vk60Rdyo28A&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=6&amp;gt;FLAP]], &amp;lt;scene name=&#039;86/868183/Arm/3&#039;&amp;gt;Arm&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=XzeTjQKfO0E&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=9&amp;gt;ARM]] and &amp;lt;scene name=&#039;86/868183/Ctd/4&#039;&amp;gt;C-Terminal Domain (CTD)&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=N-mg_xj-deI&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=7&amp;gt;CTD]].&lt;br /&gt;
&lt;br /&gt;
The carboxyl-terminal domain of TG (about 520 amino acids) shows homology with the [[Acetylcholinesterase]] and other esterases.&lt;br /&gt;
&lt;br /&gt;
In addition, &amp;lt;scene name=&#039;86/868183/Tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; has about 120 cysteine residues allowing the formation of about 60 disulfide bridge bonds per &amp;lt;scene name=&#039;86/868183/Monomer_tg/1&#039;&amp;gt;monomer&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=Nuryu1aSqvY&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=11&amp;gt;Disulfide bridge]]. It confers great stability and solubility.&lt;br /&gt;
&lt;br /&gt;
These enzymes belong to the class of α-β hydrolase fold superfamily, characterized by α–helices and β-strands that roughly alternate along the polypeptide chain.&amp;lt;ref name=&amp;quot;jeso&amp;quot;&amp;gt;DOI 26595189&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Structure of hormonogenic sites ===&lt;br /&gt;
&#039;&#039;&#039;Hormonogenic sites&#039;&#039;&#039; are substrates for TH formation. They are formed by 2 or even 3 tyrosines at less than 15 Å from each other, and exposed to the solvent. Of these tyrosines, 1 or 2 are acceptors and 1 is a donor. &lt;br /&gt;
 &lt;br /&gt;
There are 4 hormonogenic sites for &amp;lt;scene name=&#039;86/868183/Tg/3&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; :&lt;br /&gt;
&lt;br /&gt;
- an &amp;lt;scene name=&#039;86/868183/Site_a/2&#039;&amp;gt;A site&amp;lt;/scene&amp;gt;, comprising two fixed donor tyrosines Y234 and Y149 and one flexible acceptor tyrosine: Y24 [[https://www.youtube.com/watch?v=98MKFRc6S_w&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=4&amp;gt;Site A]].&lt;br /&gt;
&lt;br /&gt;
- a &amp;lt;scene name=&#039;86/868183/Site_b/4&#039;&amp;gt;B site&amp;lt;/scene&amp;gt;, including one Y2573 donor and one Y2540 acceptor [[https://www.youtube.com/watch?v=aNd32NLk9Fk&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=3&amp;gt;Site B]].&lt;br /&gt;
&lt;br /&gt;
- a &#039;&#039;&#039;C site&#039;&#039;&#039;, comprising both donor and acceptor tyrosine Y2766 (not resolved in the map).&lt;br /&gt;
&lt;br /&gt;
- a &amp;lt;scene name=&#039;86/868183/Site_d/1&#039;&amp;gt;D site&amp;lt;/scene&amp;gt;, comprising a Y108 donor and a Y1310 acceptor [[https://www.youtube.com/watch?v=JYUPk59lVVw&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=2&amp;gt;Site D]].&lt;br /&gt;
 &lt;br /&gt;
An acidic Asp (aspartic acid) or Glu (glutamic acid) residue always precedes the acceptor and a lysine is always close to the donor.  &lt;br /&gt;
Except for site C, donors are at the fixed regions of the dimer while acceptors are at the flexible regions.&lt;br /&gt;
&lt;br /&gt;
== Synthesis&amp;lt;!-- &amp;lt;ref&amp;gt;PMID: 3681978&amp;lt;/ref&amp;gt; &amp;lt;ref&amp;gt;DOI 11581009&amp;lt;/ref&amp;gt; --&amp;gt;&amp;lt;ref&amp;gt;DOI 11479128&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;PMID: 6895876&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 3016640&amp;lt;/ref&amp;gt; and acquisition of its structure ==&lt;br /&gt;
=== Role and composition of the thyroid gland ===&lt;br /&gt;
&lt;br /&gt;
The [https://en.wikipedia.org/wiki/Thyroid/ thyroid] gland is an endocrine organ located in the neck that secretes thyroid hormones into the bloodstream. Among them, T4 and T3 are involved in the growth, development and regulation of the metabolism of vertebrates.&lt;br /&gt;
&lt;br /&gt;
The [https://en.wikipedia.org/wiki/Thyroid/ thyroid] gland is made up of thyroid vesicles, which are made up of thyroid follicular cells that are arranged around a lumen containing a viscous substance called colloid. The diet is a source of iodide I- ions which, once in the blood, are picked up by the thyroid cells and then partly discharged into the colloid.&lt;br /&gt;
&lt;br /&gt;
=== Expression of the TG gene===&lt;br /&gt;
In  humans, TG is coded by a large gene roughly &#039;&#039;&#039;300 kb long&#039;&#039;&#039;, located on chromosome 8. The number of exons has been estimated to be around 48, each of which is separated by introns varying in size up to 64 kb. TG gene expresion is controlled positively  by &#039;&#039;&#039;thyro-tropin (TSH)&#039;&#039;&#039; through the modulation of the intra-cellular levels of &#039;&#039;&#039;cyclic adenosine monophosphate (cAMP)&#039;&#039;&#039; via its receptor (TSHr) located at the basal membrane of the cell.&amp;lt;ref&amp;gt;PMID: 11581009&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Post-translational modifications ===&lt;br /&gt;
TG also undergoes N-glycosylations in the [https://en.wikipedia.org/wiki/Endoplasmic_reticulum/ endoplasmic reticulum] at &amp;lt;scene name=&#039;86/868183/Glycosylation_sites/1&#039;&amp;gt;17 glycosylation sites&amp;lt;/scene&amp;gt;, so that 10% of its molecular weight is carbohydrate. TG also undergoes maturation steps in this organelle, where it acquires dilsufide-bonds. These modifications enhance its stability and solubility. Indeed, the two monomers are linked not by covalent interactions but via numerous interactions allowed by these N-glycosylations.&lt;br /&gt;
&lt;br /&gt;
=== Folding ===&lt;br /&gt;
Once synthesized, the acquisition of the 3D structure of the &amp;lt;scene name=&#039;86/868183/Full_tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=ZKZy3sVNYAo&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;gt;TG]] is enabled by the ER chaperone proteins of the thyroid follicular cells via a slow process &amp;lt;ref&amp;gt;DOI 10.1042/BJ20021257&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
== Functions ==&lt;br /&gt;
=== TH synthesis ===&lt;br /&gt;
==== Mechanism ====&lt;br /&gt;
Once their 3D structure is acquired, TGs are exported into the colloid by exocytosis thanks to their signal peptide which will be cleaved. This extracellular storage increases the amount of TG stored in the body. &lt;br /&gt;
 &lt;br /&gt;
In the colloid, about &#039;&#039;&#039;30 tyrosines&#039;&#039;&#039; out of the &#039;&#039;&#039;66 tyrosines&#039;&#039;&#039;, each consisting of a phenol group, are iodized. The quantity of iodinated tyrosine depends however on the iodide concentration of the colloid. Indeed, one or two iodide ions can be covalently bound to the colloid and thus give a &#039;&#039;&#039;di- (DIT)&#039;&#039;&#039; or &#039;&#039;&#039;mono-iodinated (MIT) phenol group&#039;&#039;&#039;. The iodination of the phenol groups is carried out by two membrane enzymes of the follicular cells: the double oxidase (&#039;&#039;&#039;DUOX&#039;&#039;&#039;) synthesizes the hydrogen peroxide H2O2 necessary for thyroid peroxidase (&#039;&#039;&#039;TPO&#039;&#039;&#039;). The synthesis is completed by TG proteolysis. &lt;br /&gt;
 &lt;br /&gt;
Due to the spatial conformation of &amp;lt;scene name=&#039;86/868183/Tg/3&#039;&amp;gt;TG&amp;lt;/scene&amp;gt;, there is a transfer of di- or mono-iodinated aromatic ring from a donor tyrosine to a close acceptor diiodotyrosine for the 14 tyrosines of the hormonogenic sites. Acceptor iodinated tyrosines are DITs because they are deprotonated due to their 6.5 acid pka facilitating the acceptance reaction leading to the formation of quinol-ether bonds, whereas donor iodinated tyrosines are MITs with a pKa of 8.5&amp;lt;ref&amp;gt;DOI 10.1530/eje.0.1380227&amp;lt;/ref&amp;gt;.&lt;br /&gt;
 &lt;br /&gt;
At the end of the coupling, the donor tyrosines are left with a dehydroalanine.&lt;br /&gt;
 &lt;br /&gt;
Once iodization and coupling have been performed, endocytosis of the colloid to the lysosome occurs. The &amp;lt;scene name=&#039;86/868183/Tg/3&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; is proteolyzed by cathepsin proteases&amp;lt;ref&amp;gt;DOI 1939080&amp;lt;/ref&amp;gt; and 7 TH are thus released from 14 mono- or di-iodinated tyrosines.&lt;br /&gt;
 &lt;br /&gt;
The hormone synthesis function of TG is thus particularly linked to its structure. Moreover, research shows that denaturation or a simple modification of its conformation prevents the formation of TH &amp;lt;ref&amp;gt;PMID:4710237&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 456595&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
==== Control ====&lt;br /&gt;
The synthesis of TH from TG is stimulated by thyroid stimulating hormone (TSH) secreted by the pituitary gland, a gland of the brain. When the TSH receptor is activated, glycosylations leading to the mono iodination of tyrosines promote the synthesis of T3&amp;lt;ref&amp;gt;DOI  3182849&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;PMID: 1370485&amp;lt;/ref&amp;gt;.&lt;br /&gt;
On the other hand, if the amount of hormones is too high, a negative feedback is exerted on this process while a small amount of these hormones exerts a positive feedback.&lt;br /&gt;
&lt;br /&gt;
=== Iodine tank ===&lt;br /&gt;
The complex and particularly stable structure of &amp;lt;scene name=&#039;86/868183/Tg/3&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; gives it iodide reservoir properties. Indeed, all iodinated but non-hormonoid tyrosines are useful for iodine storage in the thyroid gland. &lt;br /&gt;
&lt;br /&gt;
== Interest in the medical field&amp;lt;ref&amp;gt;DOI 6814409&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 29984794&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;jeso&amp;quot;/&amp;gt; ==&lt;br /&gt;
=== Modification of the TG quantity related to the desease ===&lt;br /&gt;
A healthy subject has between &#039;&#039;&#039;5 and 25 µg of TG per liter&#039;&#039;&#039; of blood.&amp;lt;ref&amp;gt;DOI 5773064&amp;lt;/ref&amp;gt; In case of thyroid dysfunction, this level may increase or decrease. For example, it decreases in the case of congenital athyreosis (insufficiency of the thyroid gland) or prior to a miscarriage due to the presence of anti-TG antibodies, but increases in the case of cancer, thyroiditis, inflammation of the thyroid or autoimmune thyroid diseases &#039;&#039;&#039;AITD&#039;&#039;&#039; &amp;lt;ref&amp;gt;DOI 24147207&amp;lt;/ref&amp;gt;(Grave&#039;s disease, Hashimoto&#039;s thyroiditis).&amp;lt;ref&amp;gt;DOI 11788684&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 17614775&amp;lt;/ref&amp;gt;&lt;br /&gt;
 &lt;br /&gt;
In addition, a decrease in the size or capacity of the thyroid causes a decrease in the synthesis of TH by the &amp;lt;scene name=&#039;86/868183/Tg/3&#039;&amp;gt;TG&amp;lt;/scene&amp;gt;, and thus a drop in the blood level of T4 and T3, which in turn causes heart disease, brain disease and abnormalities in the development of the fetus. &amp;lt;ref&amp;gt;DOI 29246752&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 28593684&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 12721190&amp;lt;/ref&amp;gt;&lt;br /&gt;
 &lt;br /&gt;
The variation of the quantity of TG can thus be as much a cause as a consequence of disease.&amp;lt;ref&amp;gt;DOI 17201802&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Use of TG to treat deseases ===&lt;br /&gt;
A classic &#039;&#039;&#039;TSH-stimulated&#039;&#039;&#039; &amp;lt;scene name=&#039;86/868183/Tg/3&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; measurement or ultrasensitive &amp;lt;scene name=&#039;86/868183/Tg/3&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; measurement allows to control its rate in a more or less sensitive way and therefore to detect a disease like those mentioned above, to ensure the effectiveness of a treatment and the absence of recurrence and to avoid&lt;br /&gt;
miscarriages.&amp;lt;ref&amp;gt;DOI 3681445&amp;lt;/ref&amp;gt;&lt;br /&gt;
Since serum &amp;lt;scene name=&#039;86/868183/Tg/3&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; levels are correlated with the volume of thyroid tissue, we can also estimate the mass of thyroid tissue to detect &#039;&#039;&#039;hyperthyroidism&#039;&#039;&#039;, a disease related to an enlarged thyroid or, conversely, &#039;&#039;&#039;hypothyroidism&#039;&#039;&#039;.&lt;br /&gt;
 &lt;br /&gt;
For example, [https://en.wikipedia.org/wiki/Thyroidectomy/ thyroidectomy] and a iodine-131 therapy can be performed to cure thyroid cancer with an 80% chance. Following removal and iodine-131 therapy, thyroglobulin is this time produced by malignant thyrocytes. As a result, its blood level is indistinguishable from that of a healthy person. &amp;lt;ref&amp;gt;PMID: 762873&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 21649472&amp;lt;/ref&amp;gt;&lt;br /&gt;
But in case of recurrence and persistence of cancer, its level can increase again. Thyroglobulin therefore always serves as a tumor marker allowing us to estimate the risk of recurrence (&amp;gt;2ng/ml) or persistence (&amp;gt;1ng/ml) or remission.&amp;lt;ref&amp;gt;DOI 10.1677/ERC-10-0292&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
== References ==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Antoine Lambert</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_1650&amp;diff=3502658</id>
		<title>Sandbox Reserved 1650</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_1650&amp;diff=3502658"/>
		<updated>2022-01-17T12:26:38Z</updated>

		<summary type="html">&lt;p&gt;Antoine Lambert: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;{{Sandbox_Reserved_ESBS20_}}&amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
== Human thyroglobulin (TG) ==&lt;br /&gt;
&amp;lt;StructureSection load=&#039;6scj&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;Human thyroglobulin&#039; scene=&#039;&#039;&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Introduction&#039;&#039;&#039;&lt;br /&gt;
[https://en.wikipedia.org/wiki/Thyroglobulin Human thyroglobulin (TG)] is a precursor of two  [https://en.wikipedia.org/wiki/Thyroid_hormones thyroid hormones] (TH): tetraiodothyronine or [[thyroxine]] (T4) and [[triiodothyronine (T3)]], two thyroid hormones (TH) essential for &#039;&#039;&#039;growth&#039;&#039;&#039;, &#039;&#039;&#039;development&#039;&#039;&#039; and the &#039;&#039;&#039;control of metabolism&#039;&#039;&#039;. Its structure is essential for the diagnosis, treatment and monitoring of thyroid-related diseases.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== Composition and 3D structure &amp;lt;ref&amp;gt;DOI 32025030&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
=== Global structure === &lt;br /&gt;
&#039;&#039;&#039;Human thyroglobulin&#039;&#039;&#039; is a dimeric glycoprotein (see a &amp;lt;scene name=&#039;86/868183/Monomer_tg/1&#039;&amp;gt;monomer&amp;lt;/scene&amp;gt;)consisting of 2 times &#039;&#039;&#039;2749 amino acid residues&#039;&#039;&#039; with a molecular weight of &#039;&#039;&#039;660 kDa&#039;&#039;&#039;. The average size of the dimer is &#039;&#039;&#039;120x235 Å&#039;&#039;&#039;. &lt;br /&gt;
 &lt;br /&gt;
Each of its monomers comprises &#039;&#039;&#039;5 distinct regions&#039;&#039;&#039; on which approximately 66 &amp;lt;scene name=&#039;86/868183/Tyr/1&#039;&amp;gt;tyrosines&amp;lt;/scene&amp;gt; (chain A in blue, chain B in green, chain C in dark red, chain D in light red) are distributed. These are the regions : &lt;br /&gt;
&amp;lt;scene name=&#039;86/868183/Ntd/5&#039;&amp;gt;N-terminal domain (NTD)&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=MuFHlCZCetU&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=5&amp;gt;NTD]], &amp;lt;scene name=&#039;86/868183/Core/4&#039;&amp;gt;Core&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=Lx1G1KGxKN8&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=8&amp;gt;CORE]], &amp;lt;scene name=&#039;86/868183/Flap/4&#039;&amp;gt;Flap&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=vk60Rdyo28A&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=6&amp;gt;FLAP]], &amp;lt;scene name=&#039;86/868183/Arm/3&#039;&amp;gt;Arm&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=XzeTjQKfO0E&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=9&amp;gt;ARM]] and &amp;lt;scene name=&#039;86/868183/Ctd/4&#039;&amp;gt;C-Terminal Domain (CTD)&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=N-mg_xj-deI&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=7&amp;gt;CTD]].&lt;br /&gt;
&lt;br /&gt;
The carboxyl-terminal domain of TG (about 520 amino acids) shows homology with the [[Acetylcholinesterase]] and other esterases.&lt;br /&gt;
&lt;br /&gt;
In addition, &amp;lt;scene name=&#039;86/868183/Tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; has about 120 cysteine residues allowing the formation of about 60 disulfide bridge bonds per &amp;lt;scene name=&#039;86/868183/Monomer_tg/1&#039;&amp;gt;monomer&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=Nuryu1aSqvY&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=11&amp;gt;Disulfide bridge]]. It confers great stability and solubility.&lt;br /&gt;
&lt;br /&gt;
These enzymes belong to the class of α-β hydrolase fold superfamily, characterized by α–helices and β-strands that roughly alternate along the polypeptide chain.&amp;lt;ref name=&amp;quot;jeso&amp;quot;&amp;gt;DOI 26595189&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Structure of hormonogenic sites ===&lt;br /&gt;
&#039;&#039;&#039;Hormonogenic sites&#039;&#039;&#039; are substrates for TH formation. They are formed by 2 or even 3 tyrosines at less than 15 Å from each other, and exposed to the solvent. Of these tyrosines, 1 or 2 are acceptors and 1 is a donor. &lt;br /&gt;
 &lt;br /&gt;
There are 4 hormonogenic sites for &amp;lt;scene name=&#039;86/868183/Tg/3&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; :&lt;br /&gt;
&lt;br /&gt;
- an &amp;lt;scene name=&#039;86/868183/Site_a/2&#039;&amp;gt;A site&amp;lt;/scene&amp;gt;, comprising two fixed donor tyrosines Y234 and Y149 and one flexible acceptor tyrosine: Y24 [[https://www.youtube.com/watch?v=98MKFRc6S_w&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=4&amp;gt;Site A]].&lt;br /&gt;
&lt;br /&gt;
- a &amp;lt;scene name=&#039;86/868183/Site_b/4&#039;&amp;gt;B site&amp;lt;/scene&amp;gt;, including one Y2573 donor and one Y2540 acceptor [[https://www.youtube.com/watch?v=aNd32NLk9Fk&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=3&amp;gt;Site B]].&lt;br /&gt;
&lt;br /&gt;
- a &#039;&#039;&#039;C site&#039;&#039;&#039;, comprising both donor and acceptor tyrosine Y2766 (not resolved in the map).&lt;br /&gt;
&lt;br /&gt;
- a &amp;lt;scene name=&#039;86/868183/Site_d/1&#039;&amp;gt;D site&amp;lt;/scene&amp;gt;, comprising a Y108 donor and a Y1310 acceptor [[https://www.youtube.com/watch?v=JYUPk59lVVw&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=2&amp;gt;Site D]].&lt;br /&gt;
 &lt;br /&gt;
An acidic Asp (aspartic acid) or Glu (glutamic acid) residue always precedes the acceptor and a lysine is always close to the donor.  &lt;br /&gt;
Except for site C, donors are at the fixed regions of the dimer while acceptors are at the flexible regions.&lt;br /&gt;
&lt;br /&gt;
== Synthesis&amp;lt;!-- &amp;lt;ref&amp;gt;PMID: 3681978&amp;lt;/ref&amp;gt; &amp;lt;ref&amp;gt;DOI 11581009&amp;lt;/ref&amp;gt; --&amp;gt;&amp;lt;ref&amp;gt;DOI 11479128&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;PMID: 6895876&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 3016640&amp;lt;/ref&amp;gt; and acquisition of its structure ==&lt;br /&gt;
=== Role and composition of the thyroid gland ===&lt;br /&gt;
&lt;br /&gt;
The [https://en.wikipedia.org/wiki/Thyroid/ thyroid] gland is an endocrine organ located in the neck that secretes thyroid hormones into the bloodstream. Among them, T4 and T3 are involved in the growth, development and regulation of the metabolism of vertebrates.&lt;br /&gt;
&lt;br /&gt;
The [https://en.wikipedia.org/wiki/Thyroid/ thyroid] gland is made up of thyroid vesicles, which are made up of thyroid follicular cells that are arranged around a lumen containing a viscous substance called colloid. The diet is a source of iodide I- ions which, once in the blood, are picked up by the thyroid cells and then partly discharged into the colloid.&lt;br /&gt;
&lt;br /&gt;
=== Expression of the TG gene===&lt;br /&gt;
In  humans, TG is coded by a large gene roughly &#039;&#039;&#039;300 kb long&#039;&#039;&#039;, located on chromosome 8. The number of exons has been estimated to be around 48, each of which is separated by introns varying in size up to 64 kb. TG gene expresion is controlled positively  by &#039;&#039;&#039;thyro-tropin (TSH)&#039;&#039;&#039; through the modulation of the intra-cellular levels of &#039;&#039;&#039;cyclic adenosine monophosphate (cAMP)&#039;&#039;&#039; via its receptor (TSHr) located at the basal membrane of the cell.&amp;lt;ref&amp;gt;PMID: 11581009&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Post-translational modifications ===&lt;br /&gt;
TG also undergoes N-glycosylations in the [https://en.wikipedia.org/wiki/Endoplasmic_reticulum/ endoplasmic reticulum] at &amp;lt;scene name=&#039;86/868183/Glycosylation_sites/1&#039;&amp;gt;17 glycosylation sites&amp;lt;/scene&amp;gt;, so that 10% of its molecular weight is carbohydrate. TG also undergoes maturation steps in this organelle, where it acquires dilsufide-bonds. These modifications enhance its stability and solubility. Indeed, the two monomers are linked not by covalent interactions but via numerous interactions allowed by these N-glycosylations.&lt;br /&gt;
&lt;br /&gt;
=== Folding ===&lt;br /&gt;
Once synthesized, the acquisition of the 3D structure of the &amp;lt;scene name=&#039;86/868183/Full_tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=ZKZy3sVNYAo&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;gt;TG]] is enabled by the ER chaperone proteins of the thyroid follicular cells via a slow process &amp;lt;ref&amp;gt;DOI 10.1042/BJ20021257&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
== Functions ==&lt;br /&gt;
=== TH synthesis ===&lt;br /&gt;
==== Mechanism ====&lt;br /&gt;
Once their 3D structure is acquired, TGs are exported into the colloid by exocytosis thanks to their signal peptide which will be cleaved. This extracellular storage increases the amount of TG stored in the body. &lt;br /&gt;
 &lt;br /&gt;
In the colloid, about &#039;&#039;&#039;30 tyrosines&#039;&#039;&#039; out of the &#039;&#039;&#039;66 tyrosines&#039;&#039;&#039;, each consisting of a phenol group, are iodized. The quantity of iodinated tyrosine depends however on the iodide concentration of the colloid. Indeed, one or two iodide ions can be covalently bound to the colloid and thus give a &#039;&#039;&#039;di- (DIT)&#039;&#039;&#039; or &#039;&#039;&#039;mono-iodinated (MIT) phenol group&#039;&#039;&#039;. The iodination of the phenol groups is carried out by two membrane enzymes of the follicular cells: the double oxidase (&#039;&#039;&#039;DUOX&#039;&#039;&#039;) synthesizes the hydrogen peroxide H2O2 necessary for thyroid peroxidase (&#039;&#039;&#039;TPO&#039;&#039;&#039;). The synthesis is completed by TG proteolysis. &lt;br /&gt;
 &lt;br /&gt;
Due to the spatial conformation of &amp;lt;scene name=&#039;86/868183/Tg/3&#039;&amp;gt;TG&amp;lt;/scene&amp;gt;, there is a transfer of di- or mono-iodinated aromatic ring from a donor tyrosine to a close acceptor diiodotyrosine for the 14 tyrosines of the hormonogenic sites. Acceptor iodinated tyrosines are DITs because they are deprotonated due to their 6.5 acid pka facilitating the acceptance reaction leading to the formation of quinol-ether bonds, whereas donor iodinated tyrosines are MITs with a pKa of 8.5&amp;lt;ref&amp;gt;DOI 10.1530/eje.0.1380227&amp;lt;/ref&amp;gt;.&lt;br /&gt;
 &lt;br /&gt;
At the end of the coupling, the donor tyrosines are left with a dehydroalanine.&lt;br /&gt;
 &lt;br /&gt;
Once iodization and coupling have been performed, endocytosis of the colloid to the lysosome occurs. The &amp;lt;scene name=&#039;86/868183/Tg/3&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; is proteolyzed by cathepsin proteases&amp;lt;ref&amp;gt;DOI 1939080&amp;lt;/ref&amp;gt; and 7 TH are thus released from 14 mono- or di-iodinated tyrosines.&lt;br /&gt;
 &lt;br /&gt;
The hormone synthesis function of TG is thus particularly linked to its structure. Moreover, research shows that denaturation or a simple modification of its conformation prevents the formation of TH &amp;lt;ref&amp;gt;PMID:4710237&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 456595&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
==== Control ====&lt;br /&gt;
The synthesis of TH from TG is stimulated by thyroid stimulating hormone (TSH) secreted by the pituitary gland, a gland of the brain. When the TSH receptor is activated, glycosylations leading to the mono iodination of tyrosines promote the synthesis of T3&amp;lt;ref&amp;gt;DOI  3182849&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;PMID: 1370485&amp;lt;/ref&amp;gt;.&lt;br /&gt;
On the other hand, if the amount of hormones is too high, a negative feedback is exerted on this process while a small amount of these hormones exerts a positive feedback.&lt;br /&gt;
&lt;br /&gt;
=== Iodine tank ===&lt;br /&gt;
The complex and particularly stable structure of &amp;lt;scene name=&#039;86/868183/Tg/3&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; gives it iodide reservoir properties. Indeed, all iodinated but non-hormonoid tyrosines are useful for iodine storage in the thyroid gland. &lt;br /&gt;
&lt;br /&gt;
== Interest in the medical field&amp;lt;ref&amp;gt;DOI 6814409&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 29984794&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;jeso&amp;quot;/&amp;gt; ==&lt;br /&gt;
=== Modification of the TG quantity related to the desease ===&lt;br /&gt;
A healthy subject has between &#039;&#039;&#039;5 and 25 µg of TG per liter&#039;&#039;&#039; of blood.&amp;lt;ref&amp;gt;DOI 5773064&amp;lt;/ref&amp;gt; In case of thyroid dysfunction, this level may increase or decrease. For example, it decreases in the case of congenital athyreosis (insufficiency of the thyroid gland) or prior to a miscarriage due to the presence of anti-TG antibodies, but increases in the case of cancer, thyroiditis, inflammation of the thyroid or autoimmune thyroid diseases &#039;&#039;&#039;AITD&#039;&#039;&#039; &amp;lt;ref&amp;gt;DOI 24147207&amp;lt;/ref&amp;gt;(Grave&#039;s disease, Hashimoto&#039;s thyroiditis).&amp;lt;ref&amp;gt;DOI 11788684&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 17614775&amp;lt;/ref&amp;gt;&lt;br /&gt;
 &lt;br /&gt;
In addition, a decrease in the size or capacity of the thyroid causes a decrease in the synthesis of TH by the &amp;lt;scene name=&#039;86/868183/Tg/3&#039;&amp;gt;TG&amp;lt;/scene&amp;gt;, and thus a drop in the blood level of T4 and T3, which in turn causes heart disease, brain disease and abnormalities in the development of the fetus. &amp;lt;ref&amp;gt;DOI 29246752&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 28593684&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 12721190&amp;lt;/ref&amp;gt;&lt;br /&gt;
 &lt;br /&gt;
The variation of the quantity of TG can thus be as much a cause as a consequence of disease.&amp;lt;ref&amp;gt;DOI 17201802&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Use of TG to treat deseases ===&lt;br /&gt;
A classic &#039;&#039;&#039;TSH-stimulated&#039;&#039;&#039; &amp;lt;scene name=&#039;86/868183/Tg/3&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; measurement or ultrasensitive &amp;lt;scene name=&#039;86/868183/Tg/3&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; measurement allows to control its rate in a more or less sensitive way and therefore to detect a disease like those mentioned above, to ensure the effectiveness of a treatment and the absence of recurrence and to avoid&lt;br /&gt;
miscarriages.&amp;lt;ref&amp;gt;DOI 3681445&amp;lt;/ref&amp;gt;&lt;br /&gt;
Since serum &amp;lt;scene name=&#039;86/868183/Tg/3&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; levels are correlated with the volume of thyroid tissue, we can also estimate the mass of thyroid tissue to detect &#039;&#039;&#039;hyperthyroidism&#039;&#039;&#039;, a disease related to an enlarged thyroid or, conversely, &#039;&#039;&#039;hypothyroidism&#039;&#039;&#039;.&lt;br /&gt;
 &lt;br /&gt;
For example, [https://en.wikipedia.org/wiki/Thyroidectomy/ thyroidectomy] and a iodine-131 therapy can be performed to cure thyroid cancer with an 80% chance. Following removal and iodine-131 therapy, thyroglobulin is this time produced by malignant thyrocytes. As a result, its blood level is indistinguishable from that of a healthy person. &amp;lt;ref&amp;gt;PMID: 762873&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 21649472&amp;lt;/ref&amp;gt;&lt;br /&gt;
But in case of recurrence and persistence of cancer, its level can increase again. Thyroglobulin therefore always serves as a tumor marker allowing us to estimate the risk of recurrence (&amp;gt;2ng/ml) or persistence (&amp;gt;1ng/ml) or remission.&amp;lt;ref&amp;gt;DOI 10.1677/ERC-10-0292&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
== References ==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Antoine Lambert</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_1650&amp;diff=3502657</id>
		<title>Sandbox Reserved 1650</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_1650&amp;diff=3502657"/>
		<updated>2022-01-17T12:15:03Z</updated>

		<summary type="html">&lt;p&gt;Antoine Lambert: modif txt&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;{{Sandbox_Reserved_ESBS20_}}&amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
== Human thyroglobulin (TG) ==&lt;br /&gt;
&amp;lt;StructureSection load=&#039;6scj&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;Human thyroglobulin&#039; scene=&#039;&#039;&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Introduction&#039;&#039;&#039;&lt;br /&gt;
[https://en.wikipedia.org/wiki/Thyroglobulin Human thyroglobulin (TG)] is a precursor of two  [https://en.wikipedia.org/wiki/Thyroid_hormones thyroid hormones] (TH): tetraiodothyronine or [[thyroxine]] (T4) and [[triiodothyronine (T3)]], two thyroid hormones (TH) essential for &#039;&#039;&#039;growth&#039;&#039;&#039;, &#039;&#039;&#039;development&#039;&#039;&#039; and the &#039;&#039;&#039;control of metabolism&#039;&#039;&#039;. Its structure is essential for the diagnosis, treatment and monitoring of thyroid-related diseases.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== Composition and 3D structure &amp;lt;ref&amp;gt;DOI 32025030&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
=== Global structure === &lt;br /&gt;
&#039;&#039;&#039;Human thyroglobulin&#039;&#039;&#039; is a dimeric glycoprotein (see a &amp;lt;scene name=&#039;86/868183/Monomer_tg/1&#039;&amp;gt;monomer&amp;lt;/scene&amp;gt;)consisting of 2 times &#039;&#039;&#039;2749 amino acid residues&#039;&#039;&#039; with a molecular weight of &#039;&#039;&#039;660 kDa&#039;&#039;&#039;. The average size of the dimer is &#039;&#039;&#039;120x235 Å&#039;&#039;&#039;. &lt;br /&gt;
 &lt;br /&gt;
Each of its monomers comprises &#039;&#039;&#039;5 distinct regions&#039;&#039;&#039; on which approximately 66 &amp;lt;scene name=&#039;86/868183/Tyr/1&#039;&amp;gt;tyrosines&amp;lt;/scene&amp;gt; (chain A in blue, chain B in green, chain C in dark red, chain D in light red) are distributed. These are the regions : &lt;br /&gt;
&amp;lt;scene name=&#039;86/868183/Ntd/5&#039;&amp;gt;N-terminal domain (NTD)&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=MuFHlCZCetU&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=5&amp;gt;NTD]], &amp;lt;scene name=&#039;86/868183/Core/4&#039;&amp;gt;Core&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=Lx1G1KGxKN8&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=8&amp;gt;CORE]], &amp;lt;scene name=&#039;86/868183/Flap/4&#039;&amp;gt;Flap&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=vk60Rdyo28A&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=6&amp;gt;FLAP]], &amp;lt;scene name=&#039;86/868183/Arm/3&#039;&amp;gt;Arm&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=XzeTjQKfO0E&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=9&amp;gt;ARM]] and &amp;lt;scene name=&#039;86/868183/Ctd/4&#039;&amp;gt;C-Terminal Domain (CTD)&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=N-mg_xj-deI&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=7&amp;gt;CTD]].&lt;br /&gt;
&lt;br /&gt;
The carboxyl-terminal domain of TG (about 520 amino acids) shows homology with the [https://en.wikipedia.org/wiki/Acetylcholinesterase/ Acetylcholinesterase] and other esterases.&lt;br /&gt;
&lt;br /&gt;
In addition, &amp;lt;scene name=&#039;86/868183/Tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; has about 120 cysteine residues allowing the formation of about 60 disulfide bridge bonds per &amp;lt;scene name=&#039;86/868183/Monomer_tg/1&#039;&amp;gt;monomer&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=Nuryu1aSqvY&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=11&amp;gt;Disulfide bridge]]. It confers great stability and solubility.&lt;br /&gt;
&lt;br /&gt;
These enzymes belong to the class of α-β hydrolase fold superfamily, characterized by α–helices and β-strands that roughly alternate along the polypeptide chain.&amp;lt;ref name=&amp;quot;jeso&amp;quot;&amp;gt;DOI 26595189&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Structure of hormonogenic sites ===&lt;br /&gt;
&#039;&#039;&#039;Hormonogenic sites&#039;&#039;&#039; are substrates for TH formation. They are formed by 2 or even 3 tyrosines at less than 15 Å from each other, and exposed to the solvent. Of these tyrosines, 1 or 2 are acceptors and 1 is a donor. &lt;br /&gt;
 &lt;br /&gt;
There are 4 hormonogenic sites for &amp;lt;scene name=&#039;86/868183/Tg/3&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; :&lt;br /&gt;
&lt;br /&gt;
- an &amp;lt;scene name=&#039;86/868183/Site_a/2&#039;&amp;gt;A site&amp;lt;/scene&amp;gt;, comprising two fixed donor tyrosines Y234 and Y149 and one flexible acceptor tyrosine: Y24 [[https://www.youtube.com/watch?v=98MKFRc6S_w&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=4&amp;gt;Site A]].&lt;br /&gt;
&lt;br /&gt;
- a &amp;lt;scene name=&#039;86/868183/Site_b/4&#039;&amp;gt;B site&amp;lt;/scene&amp;gt;, including one Y2573 donor and one Y2540 acceptor [[https://www.youtube.com/watch?v=aNd32NLk9Fk&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=3&amp;gt;Site B]].&lt;br /&gt;
&lt;br /&gt;
- a &#039;&#039;&#039;C site&#039;&#039;&#039;, comprising both donor and acceptor tyrosine Y2766 (not resolved in the map).&lt;br /&gt;
&lt;br /&gt;
- a &amp;lt;scene name=&#039;86/868183/Site_d/1&#039;&amp;gt;D site&amp;lt;/scene&amp;gt;, comprising a Y108 donor and a Y1310 acceptor [[https://www.youtube.com/watch?v=JYUPk59lVVw&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=2&amp;gt;Site D]].&lt;br /&gt;
 &lt;br /&gt;
An acidic Asp (aspartic acid) or Glu (glutamic acid) residue always precedes the acceptor and a lysine is always close to the donor.  &lt;br /&gt;
Except for site C, donors are at the fixed regions of the dimer while acceptors are at the flexible regions.&lt;br /&gt;
&lt;br /&gt;
== Synthesis&amp;lt;!-- &amp;lt;ref&amp;gt;PMID: 3681978&amp;lt;/ref&amp;gt; &amp;lt;ref&amp;gt;DOI 11581009&amp;lt;/ref&amp;gt; --&amp;gt;&amp;lt;ref&amp;gt;DOI 11479128&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;PMID: 6895876&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 3016640&amp;lt;/ref&amp;gt; and acquisition of its structure ==&lt;br /&gt;
=== Role and composition of the thyroid gland ===&lt;br /&gt;
&lt;br /&gt;
The [https://en.wikipedia.org/wiki/Thyroid/ thyroid] gland is an endocrine organ located in the neck that secretes thyroid hormones into the bloodstream. Among them, T4 and T3 are involved in the growth, development and regulation of the metabolism of vertebrates.&lt;br /&gt;
&lt;br /&gt;
The [https://en.wikipedia.org/wiki/Thyroid/ thyroid] gland is made up of thyroid vesicles, which are made up of thyroid follicular cells that are arranged around a lumen containing a viscous substance called colloid. The diet is a source of iodide I- ions which, once in the blood, are picked up by the thyroid cells and then partly discharged into the colloid.&lt;br /&gt;
&lt;br /&gt;
=== Expression of the TG gene===&lt;br /&gt;
In  humans, TG is coded by a large gene roughly &#039;&#039;&#039;300 kb long&#039;&#039;&#039;, located on chromosome 8. The number of exons has been estimated to be around 48, each of which is separated by introns varying in size up to 64 kb. TG gene expresion is controlled positively  by &#039;&#039;&#039;thyro-tropin (TSH)&#039;&#039;&#039; through the modulation of the intra-cellular levels of &#039;&#039;&#039;cyclic adenosine monophosphate (cAMP)&#039;&#039;&#039; via its receptor (TSHr) located at the basal membrane of the cell.&amp;lt;ref&amp;gt;PMID: 11581009&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Post-translational modifications ===&lt;br /&gt;
TG also undergoes N-glycosylations in the [https://en.wikipedia.org/wiki/Endoplasmic_reticulum/ endoplasmic reticulum] at &amp;lt;scene name=&#039;86/868183/Glycosylation_sites/1&#039;&amp;gt;17 glycosylation sites&amp;lt;/scene&amp;gt;, so that 10% of its molecular weight is carbohydrate. TG also undergoes maturation steps in this organelle, where it acquires dilsufide-bonds. These modifications enhance its stability and solubility. Indeed, the two monomers are linked not by covalent interactions but via numerous interactions allowed by these N-glycosylations.&lt;br /&gt;
&lt;br /&gt;
=== Folding ===&lt;br /&gt;
Once synthesized, the acquisition of the 3D structure of the &amp;lt;scene name=&#039;86/868183/Full_tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=ZKZy3sVNYAo&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;gt;TG]] is enabled by the ER chaperone proteins of the thyroid follicular cells via a slow process &amp;lt;ref&amp;gt;DOI 10.1042/BJ20021257&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
== Functions ==&lt;br /&gt;
=== TH synthesis ===&lt;br /&gt;
==== Mechanism ====&lt;br /&gt;
Once their 3D structure is acquired, TGs are exported into the colloid by exocytosis thanks to their signal peptide which will be cleaved. This extracellular storage increases the amount of TG stored in the body. &lt;br /&gt;
 &lt;br /&gt;
In the colloid, about &#039;&#039;&#039;30 tyrosines&#039;&#039;&#039; out of the &#039;&#039;&#039;66 tyrosines&#039;&#039;&#039;, each consisting of a phenol group, are iodized. The quantity of iodinated tyrosine depends however on the iodide concentration of the colloid. Indeed, one or two iodide ions can be covalently bound to the colloid and thus give a &#039;&#039;&#039;di- (DIT)&#039;&#039;&#039; or &#039;&#039;&#039;mono-iodinated (MIT) phenol group&#039;&#039;&#039;. The iodination of the phenol groups is carried out by two membrane enzymes of the follicular cells: the double oxidase (&#039;&#039;&#039;DUOX&#039;&#039;&#039;) synthesizes the hydrogen peroxide H2O2 necessary for thyroid peroxidase (&#039;&#039;&#039;TPO&#039;&#039;&#039;). The synthesis is completed by TG proteolysis. &lt;br /&gt;
 &lt;br /&gt;
Due to the spatial conformation of &amp;lt;scene name=&#039;86/868183/Tg/3&#039;&amp;gt;TG&amp;lt;/scene&amp;gt;, there is a transfer of di- or mono-iodinated aromatic ring from a donor tyrosine to a close acceptor diiodotyrosine for the 14 tyrosines of the hormonogenic sites. Acceptor iodinated tyrosines are DITs because they are deprotonated due to their 6.5 acid pka facilitating the acceptance reaction leading to the formation of quinol-ether bonds, whereas donor iodinated tyrosines are MITs with a pKa of 8.5&amp;lt;ref&amp;gt;DOI 10.1530/eje.0.1380227&amp;lt;/ref&amp;gt;.&lt;br /&gt;
 &lt;br /&gt;
At the end of the coupling, the donor tyrosines are left with a dehydroalanine.&lt;br /&gt;
 &lt;br /&gt;
Once iodization and coupling have been performed, endocytosis of the colloid to the lysosome occurs. The &amp;lt;scene name=&#039;86/868183/Tg/3&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; is proteolyzed by cathepsin proteases&amp;lt;ref&amp;gt;DOI 1939080&amp;lt;/ref&amp;gt; and 7 TH are thus released from 14 mono- or di-iodinated tyrosines.&lt;br /&gt;
 &lt;br /&gt;
The hormone synthesis function of TG is thus particularly linked to its structure. Moreover, research shows that denaturation or a simple modification of its conformation prevents the formation of TH &amp;lt;ref&amp;gt;PMID:4710237&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 456595&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
==== Control ====&lt;br /&gt;
The synthesis of TH from TG is stimulated by thyroid stimulating hormone (TSH) secreted by the pituitary gland, a gland of the brain. When the TSH receptor is activated, glycosylations leading to the mono iodination of tyrosines promote the synthesis of T3&amp;lt;ref&amp;gt;DOI  3182849&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;PMID: 1370485&amp;lt;/ref&amp;gt;.&lt;br /&gt;
On the other hand, if the amount of hormones is too high, a negative feedback is exerted on this process while a small amount of these hormones exerts a positive feedback.&lt;br /&gt;
&lt;br /&gt;
=== Iodine tank ===&lt;br /&gt;
The complex and particularly stable structure of &amp;lt;scene name=&#039;86/868183/Tg/3&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; gives it iodide reservoir properties. Indeed, all iodinated but non-hormonoid tyrosines are useful for iodine storage in the thyroid gland. &lt;br /&gt;
&lt;br /&gt;
== Interest in the medical field&amp;lt;ref&amp;gt;DOI 6814409&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 29984794&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;jeso&amp;quot;/&amp;gt; ==&lt;br /&gt;
=== Modification of the TG quantity related to the desease ===&lt;br /&gt;
A healthy subject has between &#039;&#039;&#039;5 and 25 µg of TG per liter&#039;&#039;&#039; of blood.&amp;lt;ref&amp;gt;DOI 5773064&amp;lt;/ref&amp;gt; In case of thyroid dysfunction, this level may increase or decrease. For example, it decreases in the case of congenital athyreosis (insufficiency of the thyroid gland) or prior to a miscarriage due to the presence of anti-TG antibodies, but increases in the case of cancer, thyroiditis, inflammation of the thyroid or autoimmune thyroid diseases &#039;&#039;&#039;AITD&#039;&#039;&#039; &amp;lt;ref&amp;gt;DOI 24147207&amp;lt;/ref&amp;gt;(Grave&#039;s disease, Hashimoto&#039;s thyroiditis).&amp;lt;ref&amp;gt;DOI 11788684&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 17614775&amp;lt;/ref&amp;gt;&lt;br /&gt;
 &lt;br /&gt;
In addition, a decrease in the size or capacity of the thyroid causes a decrease in the synthesis of TH by the &amp;lt;scene name=&#039;86/868183/Tg/3&#039;&amp;gt;TG&amp;lt;/scene&amp;gt;, and thus a drop in the blood level of T4 and T3, which in turn causes heart disease, brain disease and abnormalities in the development of the fetus. &amp;lt;ref&amp;gt;DOI 29246752&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 28593684&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 12721190&amp;lt;/ref&amp;gt;&lt;br /&gt;
 &lt;br /&gt;
The variation of the quantity of TG can thus be as much a cause as a consequence of disease.&amp;lt;ref&amp;gt;DOI 17201802&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Use of TG to treat deseases ===&lt;br /&gt;
A classic &#039;&#039;&#039;TSH-stimulated&#039;&#039;&#039; &amp;lt;scene name=&#039;86/868183/Tg/3&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; measurement or ultrasensitive &amp;lt;scene name=&#039;86/868183/Tg/3&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; measurement allows to control its rate in a more or less sensitive way and therefore to detect a disease like those mentioned above, to ensure the effectiveness of a treatment and the absence of recurrence and to avoid&lt;br /&gt;
miscarriages.&amp;lt;ref&amp;gt;DOI 3681445&amp;lt;/ref&amp;gt;&lt;br /&gt;
Since serum &amp;lt;scene name=&#039;86/868183/Tg/3&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; levels are correlated with the volume of thyroid tissue, we can also estimate the mass of thyroid tissue to detect &#039;&#039;&#039;hyperthyroidism&#039;&#039;&#039;, a disease related to an enlarged thyroid or, conversely, &#039;&#039;&#039;hypothyroidism&#039;&#039;&#039;.&lt;br /&gt;
 &lt;br /&gt;
For example, [https://en.wikipedia.org/wiki/Thyroidectomy/ thyroidectomy] and a iodine-131 therapy can be performed to cure thyroid cancer with an 80% chance. Following removal and iodine-131 therapy, thyroglobulin is this time produced by malignant thyrocytes. As a result, its blood level is indistinguishable from that of a healthy person. &amp;lt;ref&amp;gt;PMID: 762873&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 21649472&amp;lt;/ref&amp;gt;&lt;br /&gt;
But in case of recurrence and persistence of cancer, its level can increase again. Thyroglobulin therefore always serves as a tumor marker allowing us to estimate the risk of recurrence (&amp;gt;2ng/ml) or persistence (&amp;gt;1ng/ml) or remission.&amp;lt;ref&amp;gt;DOI 10.1677/ERC-10-0292&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
== References ==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Antoine Lambert</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_1650&amp;diff=3502349</id>
		<title>Sandbox Reserved 1650</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_1650&amp;diff=3502349"/>
		<updated>2022-01-12T16:27:01Z</updated>

		<summary type="html">&lt;p&gt;Antoine Lambert: Expression of gene&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;{{Sandbox_Reserved_ESBS20_}}&amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
== Human thyroglobulin (TG) ==&lt;br /&gt;
&amp;lt;StructureSection load=&#039;6scj&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;Human thyroglobulin&#039; scene=&#039;&#039;&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Introduction&#039;&#039;&#039;&lt;br /&gt;
[https://en.wikipedia.org/wiki/Thyroglobulin Human thyroglobulin (TG)] is a precursor of two  [https://en.wikipedia.org/wiki/Thyroid_hormones thyroid hormones] (TH): tetraiodothyronine or [[thyroxine]] (T4) and [[triiodothyronine (T3)]], two thyroid hormones (TH). Its structure is essential for the diagnosis, treatment and monitoring of thyroid-related diseases.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== Composition and 3D structure &amp;lt;ref&amp;gt;DOI 32025030&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
=== Global structure === &lt;br /&gt;
&#039;&#039;&#039;Human thyroglobulin&#039;&#039;&#039; is a dimeric glycoprotein (see a &amp;lt;scene name=&#039;86/868183/Monomer_tg/1&#039;&amp;gt;monomer&amp;lt;/scene&amp;gt;)consisting of 2 times &#039;&#039;&#039;2749 amino acid residues&#039;&#039;&#039; with a molecular weight of &#039;&#039;&#039;660 kDa&#039;&#039;&#039;. The average size of the dimer is &#039;&#039;&#039;120x235 Å&#039;&#039;&#039;. &lt;br /&gt;
 &lt;br /&gt;
Each of its monomers comprises &#039;&#039;&#039;5 distinct regions&#039;&#039;&#039; on which approximately 66 &amp;lt;scene name=&#039;86/868183/Tyr/1&#039;&amp;gt;tyrosines&amp;lt;/scene&amp;gt; (chain A in blue, chain B in green, chain C in dark red, chain D in light red) are distributed. These are the regions : &lt;br /&gt;
&amp;lt;scene name=&#039;86/868183/Ntd/5&#039;&amp;gt;N-terminal domain (NTD)&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=MuFHlCZCetU&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=5&amp;gt;NTD]], &amp;lt;scene name=&#039;86/868183/Core/4&#039;&amp;gt;Core&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=Lx1G1KGxKN8&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=8&amp;gt;CORE]], &amp;lt;scene name=&#039;86/868183/Flap/4&#039;&amp;gt;Flap&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=vk60Rdyo28A&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=6&amp;gt;FLAP]], &amp;lt;scene name=&#039;86/868183/Arm/3&#039;&amp;gt;Arm&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=XzeTjQKfO0E&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=9&amp;gt;ARM]] and &amp;lt;scene name=&#039;86/868183/Ctd/4&#039;&amp;gt;C-Terminal Domain (CTD)&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=N-mg_xj-deI&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=7&amp;gt;CTD]].&lt;br /&gt;
 &lt;br /&gt;
In addition, &amp;lt;scene name=&#039;86/868183/Tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; has about 120 cysteine residues allowing the formation of about 60 disulfide bridge bonds per &amp;lt;scene name=&#039;86/868183/Monomer_tg/1&#039;&amp;gt;monomer&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=Nuryu1aSqvY&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=11&amp;gt;Disulfide bridge]]. It is therefore a very stable and soluble protein.&lt;br /&gt;
&lt;br /&gt;
=== Structure of hormonogenic sites ===&lt;br /&gt;
&#039;&#039;&#039;Hormonogenic sites&#039;&#039;&#039; are substrates for TH formation. They are formed by 2 or even 3 tyrosines at less than 15 Å from each other, and exposed to the solvent. Of these tyrosines, 1 or 2 are acceptors and 1 is a donor. &lt;br /&gt;
 &lt;br /&gt;
There are 4 hormonogenic sites for &amp;lt;scene name=&#039;86/868183/Tg/3&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; :&lt;br /&gt;
&lt;br /&gt;
- an &amp;lt;scene name=&#039;86/868183/Site_a/2&#039;&amp;gt;A site&amp;lt;/scene&amp;gt;, comprising two fixed donor tyrosines Y234 and Y149 and one flexible acceptor tyrosine: Y24 [[https://www.youtube.com/watch?v=98MKFRc6S_w&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=4&amp;gt;Site A]].&lt;br /&gt;
&lt;br /&gt;
- a &amp;lt;scene name=&#039;86/868183/Site_b/4&#039;&amp;gt;B site&amp;lt;/scene&amp;gt;, including one Y2573 donor and one Y2540 acceptor [[https://www.youtube.com/watch?v=aNd32NLk9Fk&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=3&amp;gt;Site B]].&lt;br /&gt;
&lt;br /&gt;
- a &#039;&#039;&#039;C site&#039;&#039;&#039;, comprising both donor and acceptor tyrosine Y2766 (not resolved in the map).&lt;br /&gt;
&lt;br /&gt;
- a &amp;lt;scene name=&#039;86/868183/Site_d/1&#039;&amp;gt;D site&amp;lt;/scene&amp;gt;, comprising a Y108 donor and a Y1310 acceptor [[https://www.youtube.com/watch?v=JYUPk59lVVw&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=2&amp;gt;Site D]].&lt;br /&gt;
 &lt;br /&gt;
An acidic Asp (aspartic acid) or Glu (glutamic acid) residue always precedes the acceptor and a lysine is always close to the donor.  &lt;br /&gt;
Except for site C, donors are at the fixed regions of the dimer while acceptors are at the flexible regions.&lt;br /&gt;
&lt;br /&gt;
== Synthesis&amp;lt;!-- &amp;lt;ref&amp;gt;PMID: 3681978&amp;lt;/ref&amp;gt; &amp;lt;ref&amp;gt;DOI 11581009&amp;lt;/ref&amp;gt; --&amp;gt;&amp;lt;ref&amp;gt;DOI 11479128&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;PMID: 6895876&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 3016640&amp;lt;/ref&amp;gt; and acquisition of its structure ==&lt;br /&gt;
=== Role and composition of the thyroid gland ===&lt;br /&gt;
&lt;br /&gt;
The [https://en.wikipedia.org/wiki/Thyroid/ thyroid] gland is an endocrine organ located in the neck that secretes thyroid hormones into the bloodstream. Among them, T4 and T3 are involved in the growth, development and regulation of the metabolism of vertebrates.&lt;br /&gt;
&lt;br /&gt;
The [https://en.wikipedia.org/wiki/Thyroid/ thyroid] gland is made up of thyroid vesicles, which are made up of thyroid follicular cells that are arranged around a lumen containing a viscous substance called colloid. The diet is a source of iodide I- ions which, once in the blood, are picked up by the thyroid cells and then partly discharged into the colloid.&lt;br /&gt;
&lt;br /&gt;
=== Expression of the TG gene===&lt;br /&gt;
In  humans, TG is coded by a large gene roughly &#039;&#039;&#039;300 kb long&#039;&#039;&#039;, located on chromosome 8. The number of exons has been estimated to be around 48, each of which is separated by introns varying in size up to 64 kb. TG gene expresion is controlled positively  by &#039;&#039;&#039;thyro-tropin (TSH)&#039;&#039;&#039; through the modulation of the intra-cellular levels of &#039;&#039;&#039;cyclic adenosine monophosphate (cAMP)&#039;&#039;&#039; via its receptor (TSHr) located at the basal membrane of the cell.&amp;lt;ref&amp;gt;PMID: 11581009&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Post-translational modifications ===&lt;br /&gt;
TG also undergoes N-glycosylations in the ER at &amp;lt;scene name=&#039;86/868183/Glycosylation_sites/1&#039;&amp;gt;17 glycosylation sites&amp;lt;/scene&amp;gt;, so that 10% of its molecular weight is carbohydrate. These modifications enhance its stability and solubility. Indeed, the two monomers are linked not by covalent interactions but via numerous interactions allowed by these N-glycosylations.&lt;br /&gt;
&lt;br /&gt;
=== Folding ===&lt;br /&gt;
Once synthesized, the acquisition of the 3D structure of the &amp;lt;scene name=&#039;86/868183/Full_tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=ZKZy3sVNYAo&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;gt;TG]] is enabled by the ER chaperone proteins of the thyroid follicular cells via a slow process &amp;lt;ref&amp;gt;DOI 10.1042/BJ20021257&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
== Functions ==&lt;br /&gt;
=== TH synthesis ===&lt;br /&gt;
==== Mechanism ====&lt;br /&gt;
Once their 3D structure is acquired, TGs are exported into the colloid by exocytosis thanks to their signal peptide which will be cleaved. This extracellular storage increases the amount of TG stored in the body. &lt;br /&gt;
 &lt;br /&gt;
In the colloid, about &#039;&#039;&#039;30 tyrosines&#039;&#039;&#039; out of the &#039;&#039;&#039;66 tyrosines&#039;&#039;&#039;, each consisting of a phenol group, are iodized. The quantity of iodinated tyrosine depends however on the iodide concentration of the colloid. Indeed, one or two iodide ions can be covalently bound to the colloid and thus give a &#039;&#039;&#039;di- (DIT)&#039;&#039;&#039; or &#039;&#039;&#039;mono-iodinated (MIT) phenol group&#039;&#039;&#039;. The iodination of the phenol groups is carried out by two membrane enzymes of the follicular cells: the double oxidase (&#039;&#039;&#039;DUOX&#039;&#039;&#039;) synthesizes the hydrogen peroxide H2O2 necessary for thyroid peroxidase (&#039;&#039;&#039;TPO&#039;&#039;&#039;). &lt;br /&gt;
 &lt;br /&gt;
Due to the spatial conformation of &amp;lt;scene name=&#039;86/868183/Tg/3&#039;&amp;gt;TG&amp;lt;/scene&amp;gt;, there is a transfer of di- or mono-iodinated aromatic ring from a donor tyrosine to a close acceptor diiodotyrosine for the 14 tyrosines of the hormonogenic sites. Acceptor iodinated tyrosines are DITs because they are deprotonated due to their 6.5 acid pka facilitating the acceptance reaction leading to the formation of quinol-ether bonds, whereas donor iodinated tyrosines are MITs with a pKa of 8.5&amp;lt;ref&amp;gt;DOI 10.1530/eje.0.1380227&amp;lt;/ref&amp;gt;.&lt;br /&gt;
 &lt;br /&gt;
At the end of the coupling, the donor tyrosines are left with a dehydroalanine.&lt;br /&gt;
 &lt;br /&gt;
Once iodization and coupling have been performed, endocytosis of the colloid to the lysosome occurs. The &amp;lt;scene name=&#039;86/868183/Tg/3&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; is proteolyzed by cathepsin proteases&amp;lt;ref&amp;gt;DOI 1939080&amp;lt;/ref&amp;gt; and 7 TH are thus released from 14 mono- or di-iodinated tyrosines.&lt;br /&gt;
 &lt;br /&gt;
The hormone synthesis function of TG is thus particularly linked to its structure. Moreover, research shows that denaturation or a simple modification of its conformation prevents the formation of TH &amp;lt;ref&amp;gt;PMID:4710237&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 456595&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
==== Control ====&lt;br /&gt;
The synthesis of TH from TG is stimulated by thyroid stimulating hormone (TSH) secreted by the pituitary gland, a gland of the brain. When the TSH receptor is activated, glycosylations leading to the mono iodination of tyrosines promote the synthesis of T3&amp;lt;ref&amp;gt;DOI  3182849&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;PMID: 1370485&amp;lt;/ref&amp;gt;.&lt;br /&gt;
On the other hand, if the amount of hormones is too high, a negative feedback is exerted on this process while a small amount of these hormones exerts a positive feedback.&lt;br /&gt;
&lt;br /&gt;
=== Iodine tank ===&lt;br /&gt;
The complex and particularly stable structure of &amp;lt;scene name=&#039;86/868183/Tg/3&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; gives it iodide reservoir properties. Indeed, all iodinated but non-hormonoid tyrosines are useful for iodine storage in the thyroid gland. &lt;br /&gt;
&lt;br /&gt;
== Interest in the medical field&amp;lt;ref&amp;gt;DOI 6814409&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 29984794&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 26595189&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
=== Modification of the TG quantity related to the desease ===&lt;br /&gt;
A healthy subject has between &#039;&#039;&#039;5 and 25 µg of TG per liter&#039;&#039;&#039; of blood.&amp;lt;ref&amp;gt;DOI 5773064&amp;lt;/ref&amp;gt; In case of thyroid dysfunction, this level may increase or decrease. For example, it decreases in the case of congenital athyreosis (insufficiency of the thyroid gland) or prior to a miscarriage due to the presence of anti-TG antibodies, but increases in the case of cancer, thyroiditis, inflammation of the thyroid or autoimmune thyroid diseases &#039;&#039;&#039;AITD&#039;&#039;&#039; &amp;lt;ref&amp;gt;DOI 24147207&amp;lt;/ref&amp;gt;(Grave&#039;s disease, Hashimoto&#039;s thyroiditis).&amp;lt;ref&amp;gt;DOI 11788684&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 17614775&amp;lt;/ref&amp;gt;&lt;br /&gt;
 &lt;br /&gt;
In addition, a decrease in the size or capacity of the thyroid causes a decrease in the synthesis of TH by the &amp;lt;scene name=&#039;86/868183/Tg/3&#039;&amp;gt;TG&amp;lt;/scene&amp;gt;, and thus a drop in the blood level of T4 and T3, which in turn causes heart disease, brain disease and abnormalities in the development of the fetus. &amp;lt;ref&amp;gt;DOI 29246752&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 28593684&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 12721190&amp;lt;/ref&amp;gt;&lt;br /&gt;
 &lt;br /&gt;
The variation of the quantity of TG can thus be as much a cause as a consequence of disease.&amp;lt;ref&amp;gt;DOI 17201802&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Use of TG to treat deseases ===&lt;br /&gt;
A classic &#039;&#039;&#039;TSH-stimulated&#039;&#039;&#039; &amp;lt;scene name=&#039;86/868183/Tg/3&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; measurement or ultrasensitive &amp;lt;scene name=&#039;86/868183/Tg/3&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; measurement allows to control its rate in a more or less sensitive way and therefore to detect a disease like those mentioned above, to ensure the effectiveness of a treatment and the absence of recurrence and to avoid&lt;br /&gt;
miscarriages.&amp;lt;ref&amp;gt;DOI 3681445&amp;lt;/ref&amp;gt;&lt;br /&gt;
Since serum &amp;lt;scene name=&#039;86/868183/Tg/3&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; levels are correlated with the volume of thyroid tissue, we can also estimate the mass of thyroid tissue to detect &#039;&#039;&#039;hyperthyroidism&#039;&#039;&#039;, a disease related to an enlarged thyroid or, conversely, &#039;&#039;&#039;hypothyroidism&#039;&#039;&#039;.&lt;br /&gt;
 &lt;br /&gt;
For example, [https://en.wikipedia.org/wiki/Thyroidectomy/ thyroidectomy] and a iodine-131 therapy can be performed to cure thyroid cancer with an 80% chance. Following removal and iodine-131 therapy, thyroglobulin is this time produced by malignant thyrocytes. As a result, its blood level is indistinguishable from that of a healthy person. &amp;lt;ref&amp;gt;PMID: 762873&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 21649472&amp;lt;/ref&amp;gt;&lt;br /&gt;
But in case of recurrence and persistence of cancer, its level can increase again. Thyroglobulin therefore always serves as a tumor marker allowing us to estimate the risk of recurrence (&amp;gt;2ng/ml) or persistence (&amp;gt;1ng/ml) or remission.&amp;lt;ref&amp;gt;DOI 10.1677/ERC-10-0292&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
== References ==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Antoine Lambert</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_1650&amp;diff=3501742</id>
		<title>Sandbox Reserved 1650</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_1650&amp;diff=3501742"/>
		<updated>2022-01-12T10:23:58Z</updated>

		<summary type="html">&lt;p&gt;Antoine Lambert: organisation and ref.&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;{{Sandbox_Reserved_ESBS20_}}&amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
== Human thyroglobulin (TG) ==&lt;br /&gt;
&amp;lt;StructureSection load=&#039;6scj&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;Human thyroglobulin&#039; scene=&#039;&#039;&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Introduction&#039;&#039;&#039;&lt;br /&gt;
[https://en.wikipedia.org/wiki/Thyroglobulin Human thyroglobulin (TG)] is a precursor of two  [https://en.wikipedia.org/wiki/Thyroid_hormones thyroid hormones] (TH): tetraiodothyronine or [[thyroxine]] (T4) and [[triiodothyronine (T3)]], two thyroid hormones (TH). Its structure is essential for the diagnosis, treatment and monitoring of thyroid-related diseases.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== Composition and 3D structure &amp;lt;ref&amp;gt;DOI 32025030&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
=== Global structure === &lt;br /&gt;
&#039;&#039;&#039;Human thyroglobulin&#039;&#039;&#039; is a dimeric glycoprotein (see a &amp;lt;scene name=&#039;86/868183/Monomer_tg/1&#039;&amp;gt;monomer&amp;lt;/scene&amp;gt;)consisting of 2 times &#039;&#039;&#039;2749 amino acid residues&#039;&#039;&#039; with a molecular weight of &#039;&#039;&#039;660 kDa&#039;&#039;&#039;. The average size of the dimer is &#039;&#039;&#039;120x235 Å&#039;&#039;&#039;. &lt;br /&gt;
 &lt;br /&gt;
Each of its monomers comprises &#039;&#039;&#039;5 distinct regions&#039;&#039;&#039; on which approximately 66 &amp;lt;scene name=&#039;86/868183/Tyr/1&#039;&amp;gt;tyrosines&amp;lt;/scene&amp;gt; (chain A in blue, chain B in green, chain C in dark red, chain D in light red) are distributed. These are the regions : &lt;br /&gt;
&amp;lt;scene name=&#039;86/868183/Ntd/5&#039;&amp;gt;N-terminal domain (NTD)&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=MuFHlCZCetU&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=5&amp;gt;NTD]], &amp;lt;scene name=&#039;86/868183/Core/4&#039;&amp;gt;Core&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=Lx1G1KGxKN8&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=8&amp;gt;CORE]], &amp;lt;scene name=&#039;86/868183/Flap/4&#039;&amp;gt;Flap&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=vk60Rdyo28A&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=6&amp;gt;FLAP]], &amp;lt;scene name=&#039;86/868183/Arm/3&#039;&amp;gt;Arm&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=XzeTjQKfO0E&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=9&amp;gt;ARM]] and &amp;lt;scene name=&#039;86/868183/Ctd/4&#039;&amp;gt;C-Terminal Domain (CTD)&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=N-mg_xj-deI&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=7&amp;gt;CTD]].&lt;br /&gt;
 &lt;br /&gt;
In addition, &amp;lt;scene name=&#039;86/868183/Tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; has about 120 cysteine residues allowing the formation of about 60 disulfide bridge bonds per &amp;lt;scene name=&#039;86/868183/Monomer_tg/1&#039;&amp;gt;monomer&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=Nuryu1aSqvY&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=11&amp;gt;Disulfide bridge]]. It is therefore a very stable and soluble protein.&lt;br /&gt;
&lt;br /&gt;
=== Structure of hormonogenic sites ===&lt;br /&gt;
&#039;&#039;&#039;Hormonogenic sites&#039;&#039;&#039; are substrates for TH formation. They are formed by 2 or even 3 tyrosines at less than 15 Å from each other, and exposed to the solvent. Of these tyrosines, 1 or 2 are acceptors and 1 is a donor. &lt;br /&gt;
 &lt;br /&gt;
There are 4 hormonogenic sites for &amp;lt;scene name=&#039;86/868183/Tg/3&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; :&lt;br /&gt;
&lt;br /&gt;
- an &amp;lt;scene name=&#039;86/868183/Site_a/2&#039;&amp;gt;A site&amp;lt;/scene&amp;gt;, comprising two fixed donor tyrosines Y234 and Y149 and one flexible acceptor tyrosine: Y24 [[https://www.youtube.com/watch?v=98MKFRc6S_w&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=4&amp;gt;Site A]].&lt;br /&gt;
&lt;br /&gt;
- a &amp;lt;scene name=&#039;86/868183/Site_b/4&#039;&amp;gt;B site&amp;lt;/scene&amp;gt;, including one Y2573 donor and one Y2540 acceptor [[https://www.youtube.com/watch?v=aNd32NLk9Fk&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=3&amp;gt;Site B]].&lt;br /&gt;
&lt;br /&gt;
- a &#039;&#039;&#039;C site&#039;&#039;&#039;, comprising both donor and acceptor tyrosine Y2766 (not resolved in the map).&lt;br /&gt;
&lt;br /&gt;
- a &amp;lt;scene name=&#039;86/868183/Site_d/1&#039;&amp;gt;D site&amp;lt;/scene&amp;gt;, comprising a Y108 donor and a Y1310 acceptor [[https://www.youtube.com/watch?v=JYUPk59lVVw&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=2&amp;gt;Site D]].&lt;br /&gt;
 &lt;br /&gt;
An acidic Asp (aspartic acid) or Glu (glutamic acid) residue always precedes the acceptor and a lysine is always close to the donor.  &lt;br /&gt;
Except for site C, donors are at the fixed regions of the dimer while acceptors are at the flexible regions.&lt;br /&gt;
&lt;br /&gt;
== Synthesis&amp;lt;!-- &amp;lt;ref&amp;gt;PMID: 3681978&amp;lt;/ref&amp;gt; &amp;lt;ref&amp;gt;DOI 11581009&amp;lt;/ref&amp;gt; --&amp;gt;&amp;lt;ref&amp;gt;DOI 11479128&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;PMID: 6895876&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 3016640&amp;lt;/ref&amp;gt; and acquisition of its structure ==&lt;br /&gt;
=== Role and composition of the thyroid gland ===&lt;br /&gt;
The thyroid gland is an endocrine organ located in the neck that secretes thyroid hormones into the bloodstream. Among them, T4 and T3 are involved in the growth, development and regulation of the metabolism of vertebrates.&lt;br /&gt;
&lt;br /&gt;
The [[thyroid gland]] is made up of thyroid vesicles, which are made up of thyroid follicular cells that are arranged around a lumen containing a viscous substance called colloid. The diet is a source of iodide I- ions which, once in the blood, are picked up by the thyroid cells and then partly discharged into the colloid.&lt;br /&gt;
&lt;br /&gt;
=== Expression of the TG gene===&lt;br /&gt;
Thyroid follicular cells synthesize human &amp;lt;scene name=&#039;86/868183/Tg/3&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; via the TG gene on chromosome 8.&amp;lt;ref&amp;gt;PMID: 3595599&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Post-translational modifications ===&lt;br /&gt;
TG also undergoes N-glycosylations in the ER at &amp;lt;scene name=&#039;86/868183/Glycosylation_sites/1&#039;&amp;gt;17 glycosylation sites&amp;lt;/scene&amp;gt;, so that 10% of its molecular weight is carbohydrate. These modifications enhance its stability and solubility. Indeed, the two monomers are linked not by covalent interactions but via numerous interactions allowed by these N-glycosylations.&lt;br /&gt;
&lt;br /&gt;
=== Folding ===&lt;br /&gt;
Once synthesized, the acquisition of the 3D structure of the &amp;lt;scene name=&#039;86/868183/Full_tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=ZKZy3sVNYAo&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;gt;TG]] is enabled by the ER chaperone proteins of the thyroid follicular cells via a slow process &amp;lt;ref&amp;gt;DOI 10.1042/BJ20021257&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
== Functions ==&lt;br /&gt;
=== TH synthesis ===&lt;br /&gt;
==== Mechanism ====&lt;br /&gt;
Once their 3D structure is acquired, TGs are exported into the colloid by exocytosis thanks to their signal peptide which will be cleaved. This extracellular storage increases the amount of TG stored in the body. &lt;br /&gt;
 &lt;br /&gt;
In the colloid, about 30 tyrosines out of the 66 tyrosines, each consisting of a phenol group, are iodized. The quantity of iodinated tyrosine depends however on the iodide concentration of the colloid. Indeed, one or two iodide ions can be covalently bound to the colloid and thus give a di (DIT) or mono-iodinated (MIT) phenol group. The iodination of the phenol groups is carried out by two membrane enzymes of the follicular cells: the double oxidase (DUOX) synthesizes the hydrogen peroxide H2O2 necessary for thyroid peroxidase (TPO). &lt;br /&gt;
 &lt;br /&gt;
Due to the spatial conformation of &amp;lt;scene name=&#039;86/868183/Tg/3&#039;&amp;gt;TG&amp;lt;/scene&amp;gt;, there is a transfer of di- or mono-iodinated aromatic ring from a donor tyrosine to a close acceptor diiodotyrosine for the 14 tyrosines of the hormonogenic sites. Acceptor iodinated tyrosines are DITs because they are deprotonated due to their 6.5 acid pka facilitating the acceptance reaction leading to the formation of quinol-ether bonds, whereas donor iodinated tyrosines are MITs with a pKa of 8.5&amp;lt;ref&amp;gt;DOI 10.1530/eje.0.1380227&amp;lt;/ref&amp;gt;.&lt;br /&gt;
 &lt;br /&gt;
At the end of the coupling, the donor tyrosines are left with a dehydroalanine.&lt;br /&gt;
 &lt;br /&gt;
Once iodization and coupling have been performed, endocytosis of the colloid to the lysosome occurs. The &amp;lt;scene name=&#039;86/868183/Tg/3&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; is proteolyzed by cathepsin proteases&amp;lt;ref&amp;gt;DOI 1939080&amp;lt;/ref&amp;gt; and 7 TH are thus released from 14 mono- or di-iodinated tyrosines.&lt;br /&gt;
 &lt;br /&gt;
The hormone synthesis function of TG is thus particularly linked to its structure. Moreover, research shows that denaturation or a simple modification of its conformation prevents the formation of TH &amp;lt;ref&amp;gt;PMID:4710237&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 456595&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
==== Control ====&lt;br /&gt;
The synthesis of TH from TG is stimulated by thyroid stimulating hormone (TSH) secreted by the pituitary gland, a gland of the brain. When the TSH receptor is activated, glycosylations leading to the mono iodination of tyrosines promote the synthesis of T3&amp;lt;ref&amp;gt;DOI  3182849&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;PMID: 1370485&amp;lt;/ref&amp;gt;.&lt;br /&gt;
On the other hand, if the amount of hormones is too high, a negative feedback is exerted on this process while a small amount of these hormones exerts a positive feedback.&lt;br /&gt;
&lt;br /&gt;
=== Iodine tank ===&lt;br /&gt;
The complex and particularly stable structure of &amp;lt;scene name=&#039;86/868183/Tg/3&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; gives it iodide reservoir properties. Indeed, all iodinated but non-hormonoid tyrosines are useful for iodine storage in the thyroid gland. &lt;br /&gt;
&lt;br /&gt;
== Interest in the medical field&amp;lt;ref&amp;gt;DOI 17614775&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 10.1677/ERC-10-0292&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 5773064&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 3681445&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 12089177&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 21134539&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 6814409&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 29984794&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 26595189&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
=== Modification of the TG quantity related to the desease ===&lt;br /&gt;
A healthy subject has between &#039;&#039;&#039;5 and 25 µg of TG per liter&#039;&#039;&#039; of blood. In case of thyroid dysfunction, this level may increase or decrease. For example, it decreases in the case of congenital athyreosis (insufficiency of the thyroid gland) or prior to a miscarriage due to the presence of anti-TG antibodies, but increases in the case of cancer, thyroiditis, inflammation of the thyroid or autoimmune thyroid diseases &#039;&#039;&#039;AITD&#039;&#039;&#039; &amp;lt;ref&amp;gt;DOI 24147207&amp;lt;/ref&amp;gt;(Grave&#039;s disease, Hashimoto&#039;s thyroiditis).&amp;lt;ref&amp;gt;DOI 11788684&amp;lt;/ref&amp;gt;&lt;br /&gt;
 &lt;br /&gt;
In addition, a decrease in the size or capacity of the thyroid causes a decrease in the synthesis of TH by the &amp;lt;scene name=&#039;86/868183/Tg/3&#039;&amp;gt;TG&amp;lt;/scene&amp;gt;, and thus a drop in the blood level of T4 and T3, which in turn causes heart disease, brain disease and abnormalities in the development of the fetus. &amp;lt;ref&amp;gt;DOI 29246752&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 28593684&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 12721190&amp;lt;/ref&amp;gt;&lt;br /&gt;
 &lt;br /&gt;
The variation of the quantity of TG can thus be as much a cause as a consequence of disease.&amp;lt;ref&amp;gt;DOI 17201802&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Use of TG to treat deseases ===&lt;br /&gt;
A classic &#039;&#039;&#039;TSH-stimulated&#039;&#039;&#039; &amp;lt;scene name=&#039;86/868183/Tg/3&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; measurement or ultrasensitive &amp;lt;scene name=&#039;86/868183/Tg/3&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; measurement allows to control its rate in a more or less sensitive way and therefore to detect a disease like those mentioned above, to ensure the effectiveness of a treatment and the absence of recurrence and to avoid&lt;br /&gt;
miscarriages.&lt;br /&gt;
Since serum &amp;lt;scene name=&#039;86/868183/Tg/3&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; levels are correlated with the volume of thyroid tissue, we can also estimate the mass of thyroid tissue to detect &#039;&#039;&#039;hyperthyroidism&#039;&#039;&#039;, a disease related to an enlarged thyroid or, conversely, &#039;&#039;&#039;hypothyroidism&#039;&#039;&#039;.&lt;br /&gt;
 &lt;br /&gt;
For example, thyroidectomy and a iodine-131 therapy can be performed to cure thyroid cancer with an 80% chance. Following removal and iodine-131 therapy, thyroglobulin is this time produced by malignant thyrocytes. As a result, its blood level is indistinguishable from that of a healthy person. &amp;lt;ref&amp;gt;PMID: 762873&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 21649472&amp;lt;/ref&amp;gt;&lt;br /&gt;
But in case of recurrence and persistence of cancer, its level can increase again. Thyroglobulin therefore always serves as a tumor marker allowing us to estimate the risk of recurrence (&amp;gt;2ng/ml) or persistence (&amp;gt;1ng/ml) or remission.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
== References ==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Antoine Lambert</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_1650&amp;diff=3500191</id>
		<title>Sandbox Reserved 1650</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_1650&amp;diff=3500191"/>
		<updated>2022-01-11T22:10:27Z</updated>

		<summary type="html">&lt;p&gt;Antoine Lambert: Structure, visual aspect&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;{{Sandbox_Reserved_ESBS20_}}&amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
== Human thyroglobulin (TG) ==&lt;br /&gt;
&amp;lt;StructureSection load=&#039;6scj&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;Human thyroglobulin&#039; scene=&#039;&#039;&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Introduction&#039;&#039;&#039;&lt;br /&gt;
[https://en.wikipedia.org/wiki/Thyroglobulin Human thyroglobulin (TG)] is a precursor of two  [https://en.wikipedia.org/wiki/Thyroid_hormones thyroid hormones] (TH): tetraiodothyronine or [[thyroxine]] (T4) and [[triiodothyronine (T3)]], two thyroid hormones (TH). Its structure is essential for the diagnosis, treatment and monitoring of thyroid-related diseases.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== Composition and 3D structure &amp;lt;ref&amp;gt;DOI 32025030&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
=== Global structure === &lt;br /&gt;
&#039;&#039;&#039;Human thyroglobulin&#039;&#039;&#039; is a dimeric glycoprotein (see a &amp;lt;scene name=&#039;86/868183/Monomer_tg/1&#039;&amp;gt;monomer&amp;lt;/scene&amp;gt;)consisting of 2 times &#039;&#039;&#039;2749 amino acid residues&#039;&#039;&#039; with a molecular weight of &#039;&#039;&#039;660 kDa&#039;&#039;&#039;. The average size of the dimer is &#039;&#039;&#039;120x235 Å&#039;&#039;&#039;. &lt;br /&gt;
 &lt;br /&gt;
Each of its monomers comprises &#039;&#039;&#039;5 distinct regions&#039;&#039;&#039; on which approximately 66 &amp;lt;scene name=&#039;86/868183/Tyr/1&#039;&amp;gt;tyrosines&amp;lt;/scene&amp;gt; (chain A in blue, chain B in green, chain C in dark red, chain D in light red) are distributed. These are the regions : &lt;br /&gt;
&amp;lt;scene name=&#039;86/868183/Ntd/5&#039;&amp;gt;N-terminal domain (NTD)&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=MuFHlCZCetU&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=5&amp;gt;NTD]], &amp;lt;scene name=&#039;86/868183/Core/4&#039;&amp;gt;Core&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=Lx1G1KGxKN8&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=8&amp;gt;CORE]], &amp;lt;scene name=&#039;86/868183/Flap/4&#039;&amp;gt;Flap&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=vk60Rdyo28A&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=6&amp;gt;FLAP]], &amp;lt;scene name=&#039;86/868183/Arm/3&#039;&amp;gt;Arm&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=XzeTjQKfO0E&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=9&amp;gt;ARM]] and &amp;lt;scene name=&#039;86/868183/Ctd/4&#039;&amp;gt;C-Terminal Domain (CTD)&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=N-mg_xj-deI&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=7&amp;gt;CTD]].&lt;br /&gt;
 &lt;br /&gt;
In addition, &amp;lt;scene name=&#039;86/868183/Tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; has about 120 cysteine residues allowing the formation of about 60 disulfide bridge bonds per &amp;lt;scene name=&#039;86/868183/Monomer_tg/1&#039;&amp;gt;monomer&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=Nuryu1aSqvY&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=11&amp;gt;Disulfide bridge]]. It is therefore a very stable and soluble protein.&lt;br /&gt;
&lt;br /&gt;
=== Structure of hormonogenic sites ===&lt;br /&gt;
&#039;&#039;&#039;Hormonogenic sites&#039;&#039;&#039; are substrates for TH formation. They are formed by 2 or even 3 tyrosines at less than 15 Å from each other, and exposed to the solvent. Of these tyrosines, 1 or 2 are acceptors and 1 is a donor. &lt;br /&gt;
 &lt;br /&gt;
There are 4 hormonogenic sites for &amp;lt;scene name=&#039;86/868183/Tg/3&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; :&lt;br /&gt;
&lt;br /&gt;
- an &amp;lt;scene name=&#039;86/868183/Site_a/2&#039;&amp;gt;A site&amp;lt;/scene&amp;gt;, comprising two fixed donor tyrosines Y234 and Y149 and one flexible acceptor tyrosine: Y24 [[https://www.youtube.com/watch?v=98MKFRc6S_w&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=4&amp;gt;Site A]].&lt;br /&gt;
&lt;br /&gt;
- a &amp;lt;scene name=&#039;86/868183/Site_b/4&#039;&amp;gt;B site&amp;lt;/scene&amp;gt;, including one Y2573 donor and one Y2540 acceptor [[https://www.youtube.com/watch?v=aNd32NLk9Fk&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=3&amp;gt;Site B]].&lt;br /&gt;
&lt;br /&gt;
- a &#039;&#039;&#039;C site&#039;&#039;&#039;, comprising both donor and acceptor tyrosine Y2766 (not resolved in the map).&lt;br /&gt;
&lt;br /&gt;
- a &amp;lt;scene name=&#039;86/868183/Site_d/1&#039;&amp;gt;D site&amp;lt;/scene&amp;gt;, comprising a Y108 donor and a Y1310 acceptor [[https://www.youtube.com/watch?v=JYUPk59lVVw&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=2&amp;gt;Site D]].&lt;br /&gt;
 &lt;br /&gt;
An acidic Asp (aspartic acid) or Glu (glutamic acid) residue always precedes the acceptor and a lysine is always close to the donor.  &lt;br /&gt;
Except for site C, donors are at the fixed regions of the dimer while acceptors are at the flexible regions.&lt;br /&gt;
&lt;br /&gt;
== Synthesis &amp;lt;ref&amp;gt;PMID: 3681978&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 11581009&amp;lt;/ref&amp;gt; &amp;lt;ref&amp;gt;PMID: 3595599&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 11479128&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;PMID: 6895876&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 3016640&amp;lt;/ref&amp;gt; and acquisition of its structure ==&lt;br /&gt;
=== Role and composition of the thyroid gland ===&lt;br /&gt;
The thyroid gland is an endocrine organ located in the neck that secretes thyroid hormones into the bloodstream. Among them, T4 and T3 are involved in the growth, development and regulation of the metabolism of vertebrates.&lt;br /&gt;
&lt;br /&gt;
The thyroid gland is made up of thyroid vesicles, which are made up of thyroid follicular cells that are arranged around a lumen containing a viscous substance called colloid. The diet is a source of iodide I- ions which, once in the blood, are picked up by the thyroid cells and then partly discharged into the colloid.&lt;br /&gt;
&lt;br /&gt;
=== Expression of the TG gene===&lt;br /&gt;
Thyroid follicular cells synthesize human &amp;lt;scene name=&#039;86/868183/Tg/3&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; via the TG gene on chromosome 8.&lt;br /&gt;
&lt;br /&gt;
=== Post-translational modifications ===&lt;br /&gt;
TG also undergoes N-glycosylations in the ER at &amp;lt;scene name=&#039;86/868183/Glycosylation_sites/1&#039;&amp;gt;17 glycosylation sites&amp;lt;/scene&amp;gt;, so that 10% of its molecular weight is carbohydrate. These modifications enhance its stability and solubility. Indeed, the two monomers are linked not by covalent interactions but via numerous interactions allowed by these N-glycosylations.&lt;br /&gt;
&lt;br /&gt;
=== Folding ===&lt;br /&gt;
Once synthesized, the acquisition of the 3D structure of the &amp;lt;scene name=&#039;86/868183/Full_tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=ZKZy3sVNYAo&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;gt;TG]] is enabled by the ER chaperone proteins of the thyroid follicular cells via a slow process &amp;lt;ref&amp;gt;DOI 10.1042/BJ20021257&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
== Functions ==&lt;br /&gt;
=== TH synthesis ===&lt;br /&gt;
==== Mechanism ====&lt;br /&gt;
Once their 3D structure is acquired, TGs are exported into the colloid by exocytosis thanks to their signal peptide which will be cleaved. This extracellular storage increases the amount of TG stored in the body. &lt;br /&gt;
 &lt;br /&gt;
In the colloid, about 30 tyrosines out of the 66 tyrosines, each consisting of a phenol group, are iodized. The quantity of iodinated tyrosine depends however on the iodide concentration of the colloid. Indeed, one or two iodide ions can be covalently bound to the colloid and thus give a di (DIT) or mono-iodinated (MIT) phenol group. The iodination of the phenol groups is carried out by two membrane enzymes of the follicular cells: the double oxidase (DUOX) synthesizes the hydrogen peroxide H2O2 necessary for thyroid peroxidase (TPO). &lt;br /&gt;
 &lt;br /&gt;
Due to the spatial conformation of &amp;lt;scene name=&#039;86/868183/Tg/3&#039;&amp;gt;TG&amp;lt;/scene&amp;gt;, there is a transfer of di- or mono-iodinated aromatic ring from a donor tyrosine to a close acceptor diiodotyrosine for the 14 tyrosines of the hormonogenic sites. Acceptor iodinated tyrosines are DITs because they are deprotonated due to their 6.5 acid pka facilitating the acceptance reaction leading to the formation of quinol-ether bonds, whereas donor iodinated tyrosines are MITs with a pKa of 8.5&amp;lt;ref&amp;gt;DOI 10.1530/eje.0.1380227&amp;lt;/ref&amp;gt;.&lt;br /&gt;
 &lt;br /&gt;
At the end of the coupling, the donor tyrosines are left with a dehydroalanine.&lt;br /&gt;
 &lt;br /&gt;
Once iodization and coupling have been performed, endocytosis of the colloid to the lysosome occurs. The &amp;lt;scene name=&#039;86/868183/Tg/3&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; is proteolyzed by cathepsin proteases&amp;lt;ref&amp;gt;DOI 1939080&amp;lt;/ref&amp;gt; and 7 TH are thus released from 14 mono- or di-iodinated tyrosines.&lt;br /&gt;
 &lt;br /&gt;
The hormone synthesis function of TG is thus particularly linked to its structure. Moreover, research shows that denaturation or a simple modification of its conformation prevents the formation of TH &amp;lt;ref&amp;gt;PMID:4710237&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 456595&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
==== Control ====&lt;br /&gt;
The synthesis of TH from TG is stimulated by thyroid stimulating hormone (TSH) secreted by the pituitary gland, a gland of the brain. When the TSH receptor is activated, glycosylations leading to the mono iodination of tyrosines promote the synthesis of T3&amp;lt;ref&amp;gt;DOI  3182849&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;PMID: 1370485&amp;lt;/ref&amp;gt;.&lt;br /&gt;
On the other hand, if the amount of hormones is too high, a negative feedback is exerted on this process while a small amount of these hormones exerts a positive feedback.&lt;br /&gt;
&lt;br /&gt;
=== Iodine tank ===&lt;br /&gt;
The complex and particularly stable structure of &amp;lt;scene name=&#039;86/868183/Tg/3&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; gives it iodide reservoir properties. Indeed, all iodinated but non-hormonoid tyrosines are useful for iodine storage in the thyroid gland. &lt;br /&gt;
&lt;br /&gt;
== Interest in the medical field&amp;lt;ref&amp;gt;DOI 17614775&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 10.1677/ERC-10-0292&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 5773064&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 3681445&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 12089177&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 21134539&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 6814409&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 29984794&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 26595189&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
=== Modification of the TG quantity related to the desease ===&lt;br /&gt;
A healthy subject has between &#039;&#039;&#039;5 and 25 µg of TG per liter&#039;&#039;&#039; of blood. In case of thyroid dysfunction, this level may increase or decrease. For example, it decreases in the case of congenital athyreosis (insufficiency of the thyroid gland) or prior to a miscarriage due to the presence of anti-TG antibodies, but increases in the case of cancer, thyroiditis, inflammation of the thyroid or autoimmune thyroid diseases &#039;&#039;&#039;AITD&#039;&#039;&#039; &amp;lt;ref&amp;gt;DOI 24147207&amp;lt;/ref&amp;gt;(Grave&#039;s disease, Hashimoto&#039;s thyroiditis).&amp;lt;ref&amp;gt;DOI 11788684&amp;lt;/ref&amp;gt;&lt;br /&gt;
 &lt;br /&gt;
In addition, a decrease in the size or capacity of the thyroid causes a decrease in the synthesis of TH by the &amp;lt;scene name=&#039;86/868183/Tg/3&#039;&amp;gt;TG&amp;lt;/scene&amp;gt;, and thus a drop in the blood level of T4 and T3, which in turn causes heart disease, brain disease and abnormalities in the development of the fetus. &amp;lt;ref&amp;gt;DOI 29246752&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 28593684&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 12721190&amp;lt;/ref&amp;gt;&lt;br /&gt;
 &lt;br /&gt;
The variation of the quantity of TG can thus be as much a cause as a consequence of disease.&amp;lt;ref&amp;gt;DOI 17201802&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Use of TG to treat deseases ===&lt;br /&gt;
A classic &#039;&#039;&#039;TSH-stimulated&#039;&#039;&#039; &amp;lt;scene name=&#039;86/868183/Tg/3&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; measurement or ultrasensitive &amp;lt;scene name=&#039;86/868183/Tg/3&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; measurement allows to control its rate in a more or less sensitive way and therefore to detect a disease like those mentioned above, to ensure the effectiveness of a treatment and the absence of recurrence and to avoid&lt;br /&gt;
miscarriages.&lt;br /&gt;
Since serum &amp;lt;scene name=&#039;86/868183/Tg/3&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; levels are correlated with the volume of thyroid tissue, we can also estimate the mass of thyroid tissue to detect &#039;&#039;&#039;hyperthyroidism&#039;&#039;&#039;, a disease related to an enlarged thyroid or, conversely, &#039;&#039;&#039;hypothyroidism&#039;&#039;&#039;.&lt;br /&gt;
 &lt;br /&gt;
For example, thyroidectomy and a iodine-131 therapy can be performed to cure thyroid cancer with an 80% chance. Following removal and iodine-131 therapy, thyroglobulin is this time produced by malignant thyrocytes. As a result, its blood level is indistinguishable from that of a healthy person. &amp;lt;ref&amp;gt;PMID: 762873&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 21649472&amp;lt;/ref&amp;gt;&lt;br /&gt;
But in case of recurrence and persistence of cancer, its level can increase again. Thyroglobulin therefore always serves as a tumor marker allowing us to estimate the risk of recurrence (&amp;gt;2ng/ml) or persistence (&amp;gt;1ng/ml) or remission.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
== References ==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Antoine Lambert</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_1650&amp;diff=3500190</id>
		<title>Sandbox Reserved 1650</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_1650&amp;diff=3500190"/>
		<updated>2022-01-11T21:50:02Z</updated>

		<summary type="html">&lt;p&gt;Antoine Lambert: Green links modifications&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;{{Sandbox_Reserved_ESBS20_}}&amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
== Human thyroglobulin (TG) ==&lt;br /&gt;
&amp;lt;StructureSection load=&#039;6scj&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;Human thyroglobulin&#039; scene=&#039;&#039;&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Introduction&#039;&#039;&#039;&lt;br /&gt;
[https://en.wikipedia.org/wiki/Thyroglobulin Human thyroglobulin (TG)] is a precursor of two  [https://en.wikipedia.org/wiki/Thyroid_hormones thyroid hormones] (TH): tetraiodothyronine or [[thyroxine]] (T4) and [[triiodothyronine (T3)]], two thyroid hormones (TH). Its structure is essential for the diagnosis, treatment and monitoring of thyroid-related diseases.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== Composition and 3D structure &amp;lt;ref&amp;gt;DOI 32025030&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
=== Global structure === &lt;br /&gt;
&#039;&#039;&#039;Human thyroglobulin&#039;&#039;&#039; is a dimeric glycoprotein (see a &amp;lt;scene name=&#039;86/868183/Monomer_tg/1&#039;&amp;gt;monomer&amp;lt;/scene&amp;gt;)consisting of 2 times &#039;&#039;&#039;2749 amino acid residues&#039;&#039;&#039; with a molecular weight of &#039;&#039;&#039;660 kDa&#039;&#039;&#039;. The average size of the dimer is &#039;&#039;&#039;120x235 Å&#039;&#039;&#039;. &lt;br /&gt;
 &lt;br /&gt;
Each of its monomers comprises &#039;&#039;&#039;5 distinct regions&#039;&#039;&#039; on which approximately 66 &amp;lt;scene name=&#039;86/868183/Tyr/1&#039;&amp;gt;tyrosines&amp;lt;/scene&amp;gt; (chain A in blue, chain B in green, chain C in dark red, chain D in light red) are distributed. These are the regions : &lt;br /&gt;
&amp;lt;scene name=&#039;86/868183/Ntd/5&#039;&amp;gt;N-terminal domain (NTD)&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=MuFHlCZCetU&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=5&amp;gt;NTD]], &amp;lt;scene name=&#039;86/868183/Core/4&#039;&amp;gt;Core&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=Lx1G1KGxKN8&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=8&amp;gt;CORE]], &amp;lt;scene name=&#039;86/868183/Flap/4&#039;&amp;gt;Flap&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=vk60Rdyo28A&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=6&amp;gt;FLAP]], &amp;lt;scene name=&#039;86/868183/Arm/3&#039;&amp;gt;Arm&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=XzeTjQKfO0E&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=9&amp;gt;ARM]] and &amp;lt;scene name=&#039;86/868183/Ctd/4&#039;&amp;gt;C-Terminal Domain (CTD)&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=N-mg_xj-deI&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=7&amp;gt;CTD]].&lt;br /&gt;
 &lt;br /&gt;
In addition, &amp;lt;scene name=&#039;86/868183/Tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; has about 120 cysteine residues allowing the formation of about 60 disulfide bridge bonds per &amp;lt;scene name=&#039;86/868183/Monomer_tg/1&#039;&amp;gt;monomer&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=Nuryu1aSqvY&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=11&amp;gt;Disulfide bridge]]. It is therefore a very stable and soluble protein.&lt;br /&gt;
&lt;br /&gt;
=== Structure of hormonogenic sites ===&lt;br /&gt;
&#039;&#039;&#039;Hormonogenic sites&#039;&#039;&#039; are substrates for TH formation. They are formed by 2 or even 3 tyrosines at less than 15 Å from each other, and exposed to the solvent. Of these tyrosines, 1 or 2 are acceptors and 1 is a donor. &lt;br /&gt;
 &lt;br /&gt;
There are 4 hormonogenic sites for &amp;lt;scene name=&#039;86/868183/Tg/3&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; :&lt;br /&gt;
&lt;br /&gt;
- an &amp;lt;scene name=&#039;86/868183/Site_a/2&#039;&amp;gt;A site&amp;lt;/scene&amp;gt;, comprising two fixed donor tyrosines Y234 and Y149 and one flexible acceptor tyrosine: Y24 [[https://www.youtube.com/watch?v=98MKFRc6S_w&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=4&amp;gt;Site A]].&lt;br /&gt;
&lt;br /&gt;
- a &amp;lt;scene name=&#039;86/868183/Site_b/4&#039;&amp;gt;B site&amp;lt;/scene&amp;gt;, including one Y2573 donor and one Y2540 acceptor [[https://www.youtube.com/watch?v=aNd32NLk9Fk&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=3&amp;gt;Site B]].&lt;br /&gt;
&lt;br /&gt;
- a &#039;&#039;&#039;C site&#039;&#039;&#039;, comprising both donor and acceptor tyrosine Y2766 (not resolved in the map).&lt;br /&gt;
&lt;br /&gt;
- a &amp;lt;scene name=&#039;86/868183/Site_d/1&#039;&amp;gt;D site&amp;lt;/scene&amp;gt;, comprising a Y108 donor and a Y1310 acceptor [[https://www.youtube.com/watch?v=JYUPk59lVVw&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=2&amp;gt;Site D]].&lt;br /&gt;
 &lt;br /&gt;
An acidic Asp (aspartic acid) or Glu (glutamic acid) residue always precedes the acceptor and a lysine is always close to the donor.  &lt;br /&gt;
Except for site C, donors are at the fixed regions of the dimer while acceptors are at the flexible regions.&lt;br /&gt;
&lt;br /&gt;
== Synthesis &amp;lt;ref&amp;gt;PMID: 3681978&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 11581009&amp;lt;/ref&amp;gt; &amp;lt;ref&amp;gt;PMID: 3595599&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 11479128&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;PMID: 6895876&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 3016640&amp;lt;/ref&amp;gt; and acquisition of its structure ==&lt;br /&gt;
=== Role and composition of the thyroid gland ===&lt;br /&gt;
The thyroid gland is an endocrine organ located in the neck that secretes thyroid hormones into the bloodstream. Among them, T4 and T3 are involved in the growth, development and regulation of the metabolism of vertebrates.&lt;br /&gt;
&lt;br /&gt;
The thyroid gland is made up of thyroid vesicles, which are made up of thyroid follicular cells that are arranged around a lumen containing a viscous substance called colloid. The diet is a source of iodide I- ions which, once in the blood, are picked up by the thyroid cells and then partly discharged into the colloid.&lt;br /&gt;
&lt;br /&gt;
=== Expression of the TG gene===&lt;br /&gt;
Thyroid follicular cells synthesize human &amp;lt;scene name=&#039;86/868183/Full_tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; via the TG gene on chromosome 8.&lt;br /&gt;
&lt;br /&gt;
=== Post-translational modifications ===&lt;br /&gt;
TG also undergoes N-glycosylations in the ER at 17 &amp;lt;scene name=&#039;86/868183/Carbohydrated/1&#039;&amp;gt;glycosylation sites&amp;lt;/scene&amp;gt;, so that 10% of its molecular weight is carbohydrate. These modifications enhance its stability and solubility. Indeed, the two monomers are linked not by covalent interactions but via numerous interactions allowed by these N-glycosylations.&lt;br /&gt;
&lt;br /&gt;
=== Folding ===&lt;br /&gt;
Once synthesized, the acquisition of the 3D structure of the &amp;lt;scene name=&#039;86/868183/Full_tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=ZKZy3sVNYAo&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;gt;TG]] is enabled by the ER chaperone proteins of the thyroid follicular cells via a slow process &amp;lt;ref&amp;gt;DOI 10.1042/BJ20021257&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
== Functions ==&lt;br /&gt;
=== TH synthesis ===&lt;br /&gt;
==== Mechanism ====&lt;br /&gt;
Once their 3D structure is acquired, TGs are exported into the colloid by exocytosis thanks to their signal peptide which will be cleaved. This extracellular storage increases the amount of TG stored in the body. &lt;br /&gt;
 &lt;br /&gt;
In the colloid, about 30 tyrosines out of the 66 tyrosines, each consisting of a phenol group, are iodized. The quantity of iodinated tyrosine depends however on the iodide concentration of the colloid. Indeed, one or two iodide ions can be covalently bound to the colloid and thus give a di (DIT) or mono-iodinated (MIT) phenol group. The iodination of the phenol groups is carried out by two membrane enzymes of the follicular cells: the double oxidase (DUOX) synthesizes the hydrogen peroxide H2O2 necessary for thyroid peroxidase (TPO). &lt;br /&gt;
 &lt;br /&gt;
Due to the spatial conformation of &amp;lt;scene name=&#039;86/868183/Full_tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt;, there is a transfer of di or mono iodinated aromatic ring from a donor tyrosine to a close acceptor diiodotyrosine for the 14 tyrosines of the hormonogenic sites. Acceptor iodinated tyrosines are DITs because they are deprotonated due to their 6.5 acid pka facilitating the acceptance reaction leading to the formation of quinol-ether bonds, whereas donor iodinated tyrosines are MITs with a pKa of 8.5&amp;lt;ref&amp;gt;DOI 10.1530/eje.0.1380227&amp;lt;/ref&amp;gt;.&lt;br /&gt;
 &lt;br /&gt;
At the end of the coupling, the donor tyrosines are left with a dehydroalanine.&lt;br /&gt;
 &lt;br /&gt;
Once iodization and coupling have been performed, endocytosis of the colloid to the lysosome occurs. The &amp;lt;scene name=&#039;86/868183/Full_tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; is proteolyzed by cathepsin proteases&amp;lt;ref&amp;gt;DOI 1939080&amp;lt;/ref&amp;gt; and 7 TH are thus released from 14 mono- or di iodinated tyrosines.&lt;br /&gt;
 &lt;br /&gt;
The hormone synthesis function of TG is thus particularly linked to its structure. Moreover, research shows that denaturation or a simple modification of its conformation prevents the formation of TH &amp;lt;ref&amp;gt;PMID:4710237&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 456595&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
==== Control ====&lt;br /&gt;
The synthesis of TH from TG is stimulated by thyroid stimulating hormone (TSH) secreted by the pituitary gland, a gland of the brain. When the TSH receptor is activated, glycosylations leading to the mono iodination of tyrosines promote the synthesis of T3&amp;lt;ref&amp;gt;DOI  3182849&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;PMID: 1370485&amp;lt;/ref&amp;gt;.&lt;br /&gt;
On the other hand, if the amount of hormones is too high, a negative feedback is exerted on this process while a small amount of these hormones exerts a positive feedback.&lt;br /&gt;
&lt;br /&gt;
=== Iodine tank ===&lt;br /&gt;
The complex and particularly stable structure of &amp;lt;scene name=&#039;86/868183/Full_tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; gives it iodide reservoir properties. Indeed, all iodinated but non-hormonoid tyrosines are useful for iodine storage in the thyroid gland. &lt;br /&gt;
&lt;br /&gt;
== Interest in the medical field&amp;lt;ref&amp;gt;DOI 17614775&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 10.1677/ERC-10-0292&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 5773064&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 3681445&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 12089177&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 21134539&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 6814409&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 29984794&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 26595189&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
=== Modification of the TG quantity related to the desease ===&lt;br /&gt;
A healthy subject has between 5 and 25 µg of TG per liter of blood. In case of thyroid dysfunction, this level may increase or decrease. For example, it decreases in the case of congenital athyreosis (insufficiency of the thyroid gland) or prior to a miscarriage due to the presence of anti-TG antibodies, but increases in the case of cancer, thyroiditis, inflammation of the thyroid or autoimmune thyroid diseases AITD &amp;lt;ref&amp;gt;DOI 24147207&amp;lt;/ref&amp;gt;(Grave&#039;s disease, Hashimoto&#039;s thyroiditis).&amp;lt;ref&amp;gt;DOI 11788684&amp;lt;/ref&amp;gt;&lt;br /&gt;
 &lt;br /&gt;
In addition, a decrease in the size or capacity of the thyroid causes a decrease in the synthesis of TH by the &amp;lt;scene name=&#039;86/868183/Full_tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt;, and thus a drop in the blood level of T4 and T3, which in turn causes heart disease, brain disease and abnormalities in the development of the fetus. &amp;lt;ref&amp;gt;DOI 29246752&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 28593684&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 12721190&amp;lt;/ref&amp;gt;&lt;br /&gt;
 &lt;br /&gt;
The variation of the quantity of TG can thus be as much a cause as a consequence of disease.&amp;lt;ref&amp;gt;DOI 17201802&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Use of TG to treat deseases ===&lt;br /&gt;
A classic TSH-stimulated &amp;lt;scene name=&#039;86/868183/Full_tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; measurement or ultrasensitive &amp;lt;scene name=&#039;86/868183/Full_tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; measurement allows to control its rate in a more or less sensitive way and therefore to detect a disease like those mentioned above, to ensure the effectiveness of a treatment and the absence of recurrence and to avoid&lt;br /&gt;
miscarriages.&lt;br /&gt;
Since serum &amp;lt;scene name=&#039;86/868183/Full_tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; levels are correlated with the volume of thyroid tissue, we can also estimate the mass of thyroid tissue to detect hyperthyroidism, a disease related to an enlarged thyroid or, conversely, hypothyroidism.&lt;br /&gt;
 &lt;br /&gt;
For example, thyroidectomy and a iodine-131 therapy can be performed to cure thyroid cancer with an 80% chance. Following removal and iodine-131 therapy, thyroglobulin is this time produced by malignant thyrocytes. As a result, its blood level is indistinguishable from that of a healthy person. &amp;lt;ref&amp;gt;PMID: 762873&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 21649472&amp;lt;/ref&amp;gt;&lt;br /&gt;
But in case of recurrence and persistence of cancer, its level can increase again. Thyroglobulin therefore always serves as a tumor marker allowing us to estimate the risk of recurrence (&amp;gt;2ng/ml) or persistence (&amp;gt;1ng/ml) or remission.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
== References ==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Antoine Lambert</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_1650&amp;diff=3500180</id>
		<title>Sandbox Reserved 1650</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_1650&amp;diff=3500180"/>
		<updated>2022-01-11T21:22:08Z</updated>

		<summary type="html">&lt;p&gt;Antoine Lambert: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;{{Sandbox_Reserved_ESBS20_}}&amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
== Human thyroglobulin (TG) ==&lt;br /&gt;
&amp;lt;StructureSection load=&#039;6scj&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;Human thyroglobulin&#039; scene=&#039;&#039;&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Introduction&#039;&#039;&#039;&lt;br /&gt;
[https://en.wikipedia.org/wiki/Thyroglobulin Human thyroglobulin (TG)] is a precursor of two  [https://en.wikipedia.org/wiki/Thyroid_hormones thyroid hormones] (TH): tetraiodothyronine or [[thyroxine]] (T4) and [[triiodothyronine (T3)]], two thyroid hormones (TH). Its structure is essential for the diagnosis, treatment and monitoring of thyroid-related diseases.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== Composition and 3D structure &amp;lt;ref&amp;gt;DOI 32025030&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
=== Global structure === &lt;br /&gt;
&#039;&#039;&#039;Human thyroglobulin&#039;&#039;&#039; is a dimeric glycoprotein (see a &amp;lt;scene name=&#039;86/868183/Monomer_tg/1&#039;&amp;gt;monomer&amp;lt;/scene&amp;gt;)consisting of &#039;&#039;&#039;2749 amino acid residues&#039;&#039;&#039; with a molecular weight of &#039;&#039;&#039;660 kDa&#039;&#039;&#039;. The average size of the dimer is &#039;&#039;&#039;120x235 Å&#039;&#039;&#039;. &lt;br /&gt;
 &lt;br /&gt;
Each of its monomers comprises &#039;&#039;&#039;5 distinct regions&#039;&#039;&#039; on which approximately 66 &amp;lt;scene name=&#039;86/868183/Tyr/1&#039;&amp;gt;tyrosines&amp;lt;/scene&amp;gt; (chain A in blue, chain B in green, chain C in dark red, chain D in light red) are distributed. These are the regions : &lt;br /&gt;
&amp;lt;scene name=&#039;86/868183/Ntd/5&#039;&amp;gt;N-terminal domain (NTD)&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=MuFHlCZCetU&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=5&amp;gt;NTD]], &amp;lt;scene name=&#039;86/868183/Core/4&#039;&amp;gt;Core&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=Lx1G1KGxKN8&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=8&amp;gt;CORE]], &amp;lt;scene name=&#039;86/868183/Flap/4&#039;&amp;gt;Flap&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=vk60Rdyo28A&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=6&amp;gt;FLAP]], &amp;lt;scene name=&#039;86/868183/Arm/3&#039;&amp;gt;Arm&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=XzeTjQKfO0E&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=9&amp;gt;ARM]] and &amp;lt;scene name=&#039;86/868183/Ctd/4&#039;&amp;gt;C-Terminal Domain (CTD)&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=N-mg_xj-deI&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=7&amp;gt;CTD]].&lt;br /&gt;
 &lt;br /&gt;
In addition, &amp;lt;scene name=&#039;86/868183/Tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; has about 120 cysteine residues allowing the formation of about 60 disulfide bridge bonds per &amp;lt;scene name=&#039;86/868183/Monomer_tg/1&#039;&amp;gt;monomer&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=Nuryu1aSqvY&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=11&amp;gt;Disulfide bridge]]. It is therefore a very stable and soluble protein.&lt;br /&gt;
&lt;br /&gt;
=== Structure of hormonogenic sites ===&lt;br /&gt;
&#039;&#039;&#039;Hormonogenic sites&#039;&#039;&#039; are substrates for TH formation. They are formed by 2 or even 3 tyrosines at less than 15 Å from each other, and exposed to the solvent. Of these tyrosines, 1 or 2 are acceptors and 1 is a donor. &lt;br /&gt;
 &lt;br /&gt;
There are 4 hormonogenic sites for &amp;lt;scene name=&#039;86/868183/Tg/3&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; :&lt;br /&gt;
&lt;br /&gt;
- an &amp;lt;scene name=&#039;86/868183/Site_a/2&#039;&amp;gt;A site&amp;lt;/scene&amp;gt;, comprising two fixed donor tyrosines Y234 and Y149 and one flexible acceptor tyrosine: Y24 [[https://www.youtube.com/watch?v=98MKFRc6S_w&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=4&amp;gt;Site A]]&lt;br /&gt;
&lt;br /&gt;
- a &amp;lt;scene name=&#039;86/868183/Site_b/3&#039;&amp;gt;B sites&amp;lt;/scene&amp;gt;, including one Y2573 donor and one Y2540 acceptor [[https://www.youtube.com/watch?v=aNd32NLk9Fk&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=3&amp;gt;Site B]]&lt;br /&gt;
&lt;br /&gt;
- a C site, comprising both donor and acceptor tyrosine Y2766&lt;br /&gt;
&lt;br /&gt;
- a &amp;lt;scene name=&#039;86/868183/Sites_d/1&#039;&amp;gt;D sites&amp;lt;/scene&amp;gt;, comprising a Y108 donor and a Y1310 acceptor [[https://www.youtube.com/watch?v=JYUPk59lVVw&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=2&amp;gt;Site D]]&lt;br /&gt;
 &lt;br /&gt;
An acidic Asp (aspartic acid) or Glu (glutamic acid) residue always precedes the acceptor and a lysine is always close to the donor.  &lt;br /&gt;
Except for site C, donors are at the fixed regions of the dimer while acceptors are at the flexible regions.&lt;br /&gt;
&lt;br /&gt;
== Synthesis &amp;lt;ref&amp;gt;PMID: 3681978&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 11581009&amp;lt;/ref&amp;gt; &amp;lt;ref&amp;gt;PMID: 3595599&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 11479128&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;PMID: 6895876&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 3016640&amp;lt;/ref&amp;gt; and acquisition of its structure ==&lt;br /&gt;
=== Role and composition of the thyroid gland ===&lt;br /&gt;
The thyroid gland is an endocrine organ located in the neck that secretes thyroid hormones into the bloodstream. Among them, T4 and T3 are involved in the growth, development and regulation of the metabolism of vertebrates.&lt;br /&gt;
&lt;br /&gt;
The thyroid gland is made up of thyroid vesicles, which are made up of thyroid follicular cells that are arranged around a lumen containing a viscous substance called colloid. The diet is a source of iodide I- ions which, once in the blood, are picked up by the thyroid cells and then partly discharged into the colloid.&lt;br /&gt;
&lt;br /&gt;
=== Expression of the TG gene===&lt;br /&gt;
Thyroid follicular cells synthesize human &amp;lt;scene name=&#039;86/868183/Full_tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; via the TG gene on chromosome 8.&lt;br /&gt;
&lt;br /&gt;
=== Post-translational modifications ===&lt;br /&gt;
TG also undergoes N-glycosylations in the ER at 17 &amp;lt;scene name=&#039;86/868183/Carbohydrated/1&#039;&amp;gt;glycosylation sites&amp;lt;/scene&amp;gt;, so that 10% of its molecular weight is carbohydrate. These modifications enhance its stability and solubility. Indeed, the two monomers are linked not by covalent interactions but via numerous interactions allowed by these N-glycosylations.&lt;br /&gt;
&lt;br /&gt;
=== Folding ===&lt;br /&gt;
Once synthesized, the acquisition of the 3D structure of the &amp;lt;scene name=&#039;86/868183/Full_tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=ZKZy3sVNYAo&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;gt;TG]] is enabled by the ER chaperone proteins of the thyroid follicular cells via a slow process &amp;lt;ref&amp;gt;DOI 10.1042/BJ20021257&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
== Functions ==&lt;br /&gt;
=== TH synthesis ===&lt;br /&gt;
==== Mechanism ====&lt;br /&gt;
Once their 3D structure is acquired, TGs are exported into the colloid by exocytosis thanks to their signal peptide which will be cleaved. This extracellular storage increases the amount of TG stored in the body. &lt;br /&gt;
 &lt;br /&gt;
In the colloid, about 30 tyrosines out of the 66 tyrosines, each consisting of a phenol group, are iodized. The quantity of iodinated tyrosine depends however on the iodide concentration of the colloid. Indeed, one or two iodide ions can be covalently bound to the colloid and thus give a di (DIT) or mono-iodinated (MIT) phenol group. The iodination of the phenol groups is carried out by two membrane enzymes of the follicular cells: the double oxidase (DUOX) synthesizes the hydrogen peroxide H2O2 necessary for thyroid peroxidase (TPO). &lt;br /&gt;
 &lt;br /&gt;
Due to the spatial conformation of &amp;lt;scene name=&#039;86/868183/Full_tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt;, there is a transfer of di or mono iodinated aromatic ring from a donor tyrosine to a close acceptor diiodotyrosine for the 14 tyrosines of the hormonogenic sites. Acceptor iodinated tyrosines are DITs because they are deprotonated due to their 6.5 acid pka facilitating the acceptance reaction leading to the formation of quinol-ether bonds, whereas donor iodinated tyrosines are MITs with a pKa of 8.5&amp;lt;ref&amp;gt;DOI 10.1530/eje.0.1380227&amp;lt;/ref&amp;gt;.&lt;br /&gt;
 &lt;br /&gt;
At the end of the coupling, the donor tyrosines are left with a dehydroalanine.&lt;br /&gt;
 &lt;br /&gt;
Once iodization and coupling have been performed, endocytosis of the colloid to the lysosome occurs. The &amp;lt;scene name=&#039;86/868183/Full_tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; is proteolyzed by cathepsin proteases&amp;lt;ref&amp;gt;DOI 1939080&amp;lt;/ref&amp;gt; and 7 TH are thus released from 14 mono- or di iodinated tyrosines.&lt;br /&gt;
 &lt;br /&gt;
The hormone synthesis function of TG is thus particularly linked to its structure. Moreover, research shows that denaturation or a simple modification of its conformation prevents the formation of TH &amp;lt;ref&amp;gt;PMID:4710237&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 456595&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
==== Control ====&lt;br /&gt;
The synthesis of TH from TG is stimulated by thyroid stimulating hormone (TSH) secreted by the pituitary gland, a gland of the brain. When the TSH receptor is activated, glycosylations leading to the mono iodination of tyrosines promote the synthesis of T3&amp;lt;ref&amp;gt;DOI  3182849&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;PMID: 1370485&amp;lt;/ref&amp;gt;.&lt;br /&gt;
On the other hand, if the amount of hormones is too high, a negative feedback is exerted on this process while a small amount of these hormones exerts a positive feedback.&lt;br /&gt;
&lt;br /&gt;
=== Iodine tank ===&lt;br /&gt;
The complex and particularly stable structure of &amp;lt;scene name=&#039;86/868183/Full_tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; gives it iodide reservoir properties. Indeed, all iodinated but non-hormonoid tyrosines are useful for iodine storage in the thyroid gland. &lt;br /&gt;
&lt;br /&gt;
== Interest in the medical field&amp;lt;ref&amp;gt;DOI 17614775&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 10.1677/ERC-10-0292&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 5773064&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 3681445&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 12089177&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 21134539&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 6814409&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 29984794&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 26595189&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
=== Modification of the TG quantity related to the desease ===&lt;br /&gt;
A healthy subject has between 5 and 25 µg of TG per liter of blood. In case of thyroid dysfunction, this level may increase or decrease. For example, it decreases in the case of congenital athyreosis (insufficiency of the thyroid gland) or prior to a miscarriage due to the presence of anti-TG antibodies, but increases in the case of cancer, thyroiditis, inflammation of the thyroid or autoimmune thyroid diseases AITD &amp;lt;ref&amp;gt;DOI 24147207&amp;lt;/ref&amp;gt;(Grave&#039;s disease, Hashimoto&#039;s thyroiditis).&amp;lt;ref&amp;gt;DOI 11788684&amp;lt;/ref&amp;gt;&lt;br /&gt;
 &lt;br /&gt;
In addition, a decrease in the size or capacity of the thyroid causes a decrease in the synthesis of TH by the &amp;lt;scene name=&#039;86/868183/Full_tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt;, and thus a drop in the blood level of T4 and T3, which in turn causes heart disease, brain disease and abnormalities in the development of the fetus. &amp;lt;ref&amp;gt;DOI 29246752&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 28593684&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 12721190&amp;lt;/ref&amp;gt;&lt;br /&gt;
 &lt;br /&gt;
The variation of the quantity of TG can thus be as much a cause as a consequence of disease.&amp;lt;ref&amp;gt;DOI 17201802&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Use of TG to treat deseases ===&lt;br /&gt;
A classic TSH-stimulated &amp;lt;scene name=&#039;86/868183/Full_tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; measurement or ultrasensitive &amp;lt;scene name=&#039;86/868183/Full_tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; measurement allows to control its rate in a more or less sensitive way and therefore to detect a disease like those mentioned above, to ensure the effectiveness of a treatment and the absence of recurrence and to avoid&lt;br /&gt;
miscarriages.&lt;br /&gt;
Since serum &amp;lt;scene name=&#039;86/868183/Full_tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; levels are correlated with the volume of thyroid tissue, we can also estimate the mass of thyroid tissue to detect hyperthyroidism, a disease related to an enlarged thyroid or, conversely, hypothyroidism.&lt;br /&gt;
 &lt;br /&gt;
For example, thyroidectomy and a iodine-131 therapy can be performed to cure thyroid cancer with an 80% chance. Following removal and iodine-131 therapy, thyroglobulin is this time produced by malignant thyrocytes. As a result, its blood level is indistinguishable from that of a healthy person. &amp;lt;ref&amp;gt;PMID: 762873&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 21649472&amp;lt;/ref&amp;gt;&lt;br /&gt;
But in case of recurrence and persistence of cancer, its level can increase again. Thyroglobulin therefore always serves as a tumor marker allowing us to estimate the risk of recurrence (&amp;gt;2ng/ml) or persistence (&amp;gt;1ng/ml) or remission.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
== References ==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Antoine Lambert</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_1650&amp;diff=3500175</id>
		<title>Sandbox Reserved 1650</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_1650&amp;diff=3500175"/>
		<updated>2022-01-11T21:01:55Z</updated>

		<summary type="html">&lt;p&gt;Antoine Lambert: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;{{Sandbox_Reserved_ESBS20_}}&amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
== Human thyroglobulin (TG) ==&lt;br /&gt;
&amp;lt;StructureSection load=&#039;6scj&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;Human thyroglobulin&#039; scene=&#039;&#039;&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Introduction&#039;&#039;&#039;&lt;br /&gt;
[https://en.wikipedia.org/wiki/Thyroglobulin Human thyroglobulin (TG)] is a precursor of two  [https://en.wikipedia.org/wiki/Thyroid_hormones thyroid hormones] (TH): tetraiodothyronine or [[thyroxine]] (T4) and [[triiodothyronine (T3)]], two thyroid hormones (TH). Its structure is essential for the diagnosis, treatment and monitoring of thyroid-related diseases.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== Composition and 3D structure &amp;lt;ref&amp;gt;DOI 32025030&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
=== Global structure === &lt;br /&gt;
&#039;&#039;&#039;Human thyroglobulin&#039;&#039;&#039; is a dimeric glycoprotein (see a &amp;lt;scene name=&#039;86/868183/Monomer_tg/1&#039;&amp;gt;monomer&amp;lt;/scene&amp;gt;)consisting of &#039;&#039;&#039;2749 amino acid residues&#039;&#039;&#039; with a molecular weight of &#039;&#039;&#039;660 kDa&#039;&#039;&#039;. The average size of the dimer is &#039;&#039;&#039;120x235 Å&#039;&#039;&#039;. &lt;br /&gt;
 &lt;br /&gt;
Each of its monomers comprises &#039;&#039;&#039;5 distinct regions&#039;&#039;&#039; on which approximately 66 &amp;lt;scene name=&#039;86/868183/Tyr/1&#039;&amp;gt;tyrosines&amp;lt;/scene&amp;gt; (chain A in blue, chain B in green, chain C in dark red, chain D in light red) are distributed. These are the regions : &lt;br /&gt;
&amp;lt;scene name=&#039;86/868183/Ntd/5&#039;&amp;gt;N-terminal domain (NTD)&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=MuFHlCZCetU&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=5&amp;gt;NTD]], &amp;lt;scene name=&#039;86/868183/Core/4&#039;&amp;gt;Core&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=Lx1G1KGxKN8&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=8&amp;gt;CORE]], &amp;lt;scene name=&#039;86/868183/Flap/4&#039;&amp;gt;Flap&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=vk60Rdyo28A&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=6&amp;gt;FLAP]], &amp;lt;scene name=&#039;86/868183/Arm/3&#039;&amp;gt;Arm&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=XzeTjQKfO0E&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=9&amp;gt;ARM]] and &amp;lt;scene name=&#039;86/868183/Ctd/4&#039;&amp;gt;C-Terminal Domain (CTD)&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=N-mg_xj-deI&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=7&amp;gt;CTD]].&lt;br /&gt;
 &lt;br /&gt;
In addition, &amp;lt;scene name=&#039;86/868183/Tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; has about 120 &amp;lt;scene name=&#039;86/868183/Cysteine/1&#039;&amp;gt;cysteine residues&amp;lt;/scene&amp;gt; allowing the formation of about 60 disulfide bridge bonds per &amp;lt;scene name=&#039;86/868183/Monomer_tg/1&#039;&amp;gt;monomer&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=Nuryu1aSqvY&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=11&amp;gt;Disulfide bridge]]. It is therefore a very stable and soluble protein.&lt;br /&gt;
&lt;br /&gt;
=== Structure of hormonogenic sites ===&lt;br /&gt;
Hormonogenic sites are substrates for TH formation. They are formed by 2 or even 3 tyrosines at less than 15 Å from each other, and exposed to the solvent. Of these tyrosines, 1 or 2 are acceptors and 1 is a donor. &lt;br /&gt;
 &lt;br /&gt;
There are 4 hormonogenic sites for &amp;lt;scene name=&#039;86/868183/Full_tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; :&lt;br /&gt;
&lt;br /&gt;
- a &amp;lt;scene name=&#039;86/868183/Site_a/1&#039;&amp;gt;A sites&amp;lt;/scene&amp;gt;, comprising two fixed donor tyrosines Y234 and Y149 and one flexible acceptor tyrosine: Y24 [[https://www.youtube.com/watch?v=98MKFRc6S_w&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=4&amp;gt;Site A]]&lt;br /&gt;
&lt;br /&gt;
- a &amp;lt;scene name=&#039;86/868183/Site_b/3&#039;&amp;gt;B sites&amp;lt;/scene&amp;gt;, including one Y2573 donor and one Y2540 acceptor [[https://www.youtube.com/watch?v=aNd32NLk9Fk&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=3&amp;gt;Site B]]&lt;br /&gt;
&lt;br /&gt;
- a C site, comprising both donor and acceptor tyrosine Y2766&lt;br /&gt;
&lt;br /&gt;
- a &amp;lt;scene name=&#039;86/868183/Sites_d/1&#039;&amp;gt;D sites&amp;lt;/scene&amp;gt;, comprising a Y108 donor and a Y1310 acceptor [[https://www.youtube.com/watch?v=JYUPk59lVVw&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=2&amp;gt;Site D]]&lt;br /&gt;
 &lt;br /&gt;
An acidic Asp (aspartic acid) or Glu (glutamic acid) residue always precedes the acceptor and a lysine is always close to the donor.  &lt;br /&gt;
Except for site C, donors are at the fixed regions of the dimer while acceptors are at the flexible regions.&lt;br /&gt;
&lt;br /&gt;
== Synthesis &amp;lt;ref&amp;gt;PMID: 3681978&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 11581009&amp;lt;/ref&amp;gt; &amp;lt;ref&amp;gt;PMID: 3595599&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 11479128&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;PMID: 6895876&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 3016640&amp;lt;/ref&amp;gt; and acquisition of its structure ==&lt;br /&gt;
=== Role and composition of the thyroid gland ===&lt;br /&gt;
The thyroid gland is an endocrine organ located in the neck that secretes thyroid hormones into the bloodstream. Among them, T4 and T3 are involved in the growth, development and regulation of the metabolism of vertebrates.&lt;br /&gt;
&lt;br /&gt;
The thyroid gland is made up of thyroid vesicles, which are made up of thyroid follicular cells that are arranged around a lumen containing a viscous substance called colloid. The diet is a source of iodide I- ions which, once in the blood, are picked up by the thyroid cells and then partly discharged into the colloid.&lt;br /&gt;
&lt;br /&gt;
=== Expression of the TG gene===&lt;br /&gt;
Thyroid follicular cells synthesize human &amp;lt;scene name=&#039;86/868183/Full_tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; via the TG gene on chromosome 8.&lt;br /&gt;
&lt;br /&gt;
=== Post-translational modifications ===&lt;br /&gt;
TG also undergoes N-glycosylations in the ER at 17 &amp;lt;scene name=&#039;86/868183/Carbohydrated/1&#039;&amp;gt;glycosylation sites&amp;lt;/scene&amp;gt;, so that 10% of its molecular weight is carbohydrate. These modifications enhance its stability and solubility. Indeed, the two monomers are linked not by covalent interactions but via numerous interactions allowed by these N-glycosylations.&lt;br /&gt;
&lt;br /&gt;
=== Folding ===&lt;br /&gt;
Once synthesized, the acquisition of the 3D structure of the &amp;lt;scene name=&#039;86/868183/Full_tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=ZKZy3sVNYAo&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;gt;TG]] is enabled by the ER chaperone proteins of the thyroid follicular cells via a slow process &amp;lt;ref&amp;gt;DOI 10.1042/BJ20021257&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
== Functions ==&lt;br /&gt;
=== TH synthesis ===&lt;br /&gt;
==== Mechanism ====&lt;br /&gt;
Once their 3D structure is acquired, TGs are exported into the colloid by exocytosis thanks to their signal peptide which will be cleaved. This extracellular storage increases the amount of TG stored in the body. &lt;br /&gt;
 &lt;br /&gt;
In the colloid, about 30 tyrosines out of the 66 tyrosines, each consisting of a phenol group, are iodized. The quantity of iodinated tyrosine depends however on the iodide concentration of the colloid. Indeed, one or two iodide ions can be covalently bound to the colloid and thus give a di (DIT) or mono-iodinated (MIT) phenol group. The iodination of the phenol groups is carried out by two membrane enzymes of the follicular cells: the double oxidase (DUOX) synthesizes the hydrogen peroxide H2O2 necessary for thyroid peroxidase (TPO). &lt;br /&gt;
 &lt;br /&gt;
Due to the spatial conformation of &amp;lt;scene name=&#039;86/868183/Full_tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt;, there is a transfer of di or mono iodinated aromatic ring from a donor tyrosine to a close acceptor diiodotyrosine for the 14 tyrosines of the hormonogenic sites. Acceptor iodinated tyrosines are DITs because they are deprotonated due to their 6.5 acid pka facilitating the acceptance reaction leading to the formation of quinol-ether bonds, whereas donor iodinated tyrosines are MITs with a pKa of 8.5&amp;lt;ref&amp;gt;DOI 10.1530/eje.0.1380227&amp;lt;/ref&amp;gt;.&lt;br /&gt;
 &lt;br /&gt;
At the end of the coupling, the donor tyrosines are left with a dehydroalanine.&lt;br /&gt;
 &lt;br /&gt;
Once iodization and coupling have been performed, endocytosis of the colloid to the lysosome occurs. The &amp;lt;scene name=&#039;86/868183/Full_tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; is proteolyzed by cathepsin proteases&amp;lt;ref&amp;gt;DOI 1939080&amp;lt;/ref&amp;gt; and 7 TH are thus released from 14 mono- or di iodinated tyrosines.&lt;br /&gt;
 &lt;br /&gt;
The hormone synthesis function of TG is thus particularly linked to its structure. Moreover, research shows that denaturation or a simple modification of its conformation prevents the formation of TH &amp;lt;ref&amp;gt;PMID:4710237&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 456595&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
==== Control ====&lt;br /&gt;
The synthesis of TH from TG is stimulated by thyroid stimulating hormone (TSH) secreted by the pituitary gland, a gland of the brain. When the TSH receptor is activated, glycosylations leading to the mono iodination of tyrosines promote the synthesis of T3&amp;lt;ref&amp;gt;DOI  3182849&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;PMID: 1370485&amp;lt;/ref&amp;gt;.&lt;br /&gt;
On the other hand, if the amount of hormones is too high, a negative feedback is exerted on this process while a small amount of these hormones exerts a positive feedback.&lt;br /&gt;
&lt;br /&gt;
=== Iodine tank ===&lt;br /&gt;
The complex and particularly stable structure of &amp;lt;scene name=&#039;86/868183/Full_tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; gives it iodide reservoir properties. Indeed, all iodinated but non-hormonoid tyrosines are useful for iodine storage in the thyroid gland. &lt;br /&gt;
&lt;br /&gt;
== Interest in the medical field&amp;lt;ref&amp;gt;DOI 17614775&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 10.1677/ERC-10-0292&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 5773064&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 3681445&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 12089177&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 21134539&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 6814409&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 29984794&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 26595189&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
=== Modification of the TG quantity related to the desease ===&lt;br /&gt;
A healthy subject has between 5 and 25 µg of TG per liter of blood. In case of thyroid dysfunction, this level may increase or decrease. For example, it decreases in the case of congenital athyreosis (insufficiency of the thyroid gland) or prior to a miscarriage due to the presence of anti-TG antibodies, but increases in the case of cancer, thyroiditis, inflammation of the thyroid or autoimmune thyroid diseases AITD &amp;lt;ref&amp;gt;DOI 24147207&amp;lt;/ref&amp;gt;(Grave&#039;s disease, Hashimoto&#039;s thyroiditis).&amp;lt;ref&amp;gt;DOI 11788684&amp;lt;/ref&amp;gt;&lt;br /&gt;
 &lt;br /&gt;
In addition, a decrease in the size or capacity of the thyroid causes a decrease in the synthesis of TH by the &amp;lt;scene name=&#039;86/868183/Full_tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt;, and thus a drop in the blood level of T4 and T3, which in turn causes heart disease, brain disease and abnormalities in the development of the fetus. &amp;lt;ref&amp;gt;DOI 29246752&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 28593684&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 12721190&amp;lt;/ref&amp;gt;&lt;br /&gt;
 &lt;br /&gt;
The variation of the quantity of TG can thus be as much a cause as a consequence of disease.&amp;lt;ref&amp;gt;DOI 17201802&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Use of TG to treat deseases ===&lt;br /&gt;
A classic TSH-stimulated &amp;lt;scene name=&#039;86/868183/Full_tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; measurement or ultrasensitive &amp;lt;scene name=&#039;86/868183/Full_tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; measurement allows to control its rate in a more or less sensitive way and therefore to detect a disease like those mentioned above, to ensure the effectiveness of a treatment and the absence of recurrence and to avoid&lt;br /&gt;
miscarriages.&lt;br /&gt;
Since serum &amp;lt;scene name=&#039;86/868183/Full_tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; levels are correlated with the volume of thyroid tissue, we can also estimate the mass of thyroid tissue to detect hyperthyroidism, a disease related to an enlarged thyroid or, conversely, hypothyroidism.&lt;br /&gt;
 &lt;br /&gt;
For example, thyroidectomy and a iodine-131 therapy can be performed to cure thyroid cancer with an 80% chance. Following removal and iodine-131 therapy, thyroglobulin is this time produced by malignant thyrocytes. As a result, its blood level is indistinguishable from that of a healthy person. &amp;lt;ref&amp;gt;PMID: 762873&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 21649472&amp;lt;/ref&amp;gt;&lt;br /&gt;
But in case of recurrence and persistence of cancer, its level can increase again. Thyroglobulin therefore always serves as a tumor marker allowing us to estimate the risk of recurrence (&amp;gt;2ng/ml) or persistence (&amp;gt;1ng/ml) or remission.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
== References ==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Antoine Lambert</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_1650&amp;diff=3500172</id>
		<title>Sandbox Reserved 1650</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_1650&amp;diff=3500172"/>
		<updated>2022-01-11T20:49:25Z</updated>

		<summary type="html">&lt;p&gt;Antoine Lambert: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;{{Sandbox_Reserved_ESBS20_}}&amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
== Human thyroglobulin (TG) ==&lt;br /&gt;
&amp;lt;StructureSection load=&#039;6scj&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;Human thyroglobulin&#039; scene=&#039;&#039;&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Introduction&#039;&#039;&#039;&lt;br /&gt;
[https://en.wikipedia.org/wiki/Thyroglobulin Human thyroglobulin (TG)] is a precursor of two  [https://en.wikipedia.org/wiki/Thyroid_hormones thyroid hormones] (TH): tetraiodothyronine or [[thyroxine]] (T4) and [[triiodothyronine (T3)]], two thyroid hormones (TH). Its structure is essential for the diagnosis, treatment and monitoring of thyroid-related diseases.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== Composition and 3D structure &amp;lt;ref&amp;gt;DOI 32025030&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
=== Global structure === &lt;br /&gt;
&#039;&#039;&#039;Human thyroglobulin&#039;&#039;&#039; is a dimeric glycoprotein (see a &amp;lt;scene name=&#039;86/868183/Monomer_tg/1&#039;&amp;gt;monomer&amp;lt;/scene&amp;gt;)consisting of &#039;&#039;&#039;2749 amino acid residues&#039;&#039;&#039; with a molecular weight of &#039;&#039;&#039;660 kDa&#039;&#039;&#039;. The average size of the dimer is &#039;&#039;&#039;120x235 Å&#039;&#039;&#039;. &lt;br /&gt;
 &lt;br /&gt;
Each of its monomers comprises &#039;&#039;&#039;5 distinct regions&#039;&#039;&#039; on which approximately 66 &amp;lt;scene name=&#039;86/868183/Tyr/1&#039;&amp;gt;tyrosines&amp;lt;/scene&amp;gt; (chain A in blue, chain B in green, chain C in dark red, chain D in light red) are distributed. These are the regions : &lt;br /&gt;
&amp;lt;scene name=&#039;86/868183/Ntd/5&#039;&amp;gt;N-terminal domain (NTC)&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=MuFHlCZCetU&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=5&amp;gt;NTD]], &amp;lt;scene name=&#039;86/868183/Core/4&#039;&amp;gt;Core&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=Lx1G1KGxKN8&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=8&amp;gt;CORE]], &amp;lt;scene name=&#039;86/868183/Flap/4&#039;&amp;gt;Flap&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=vk60Rdyo28A&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=6&amp;gt;FLAP]], &amp;lt;scene name=&#039;86/868183/Arm/3&#039;&amp;gt;Arm&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=XzeTjQKfO0E&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=9&amp;gt;ARM]] and &amp;lt;scene name=&#039;86/868183/Ctd/4&#039;&amp;gt;C-Terminal Domain (CTD)&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=N-mg_xj-deI&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=7&amp;gt;CTD]].&lt;br /&gt;
 &lt;br /&gt;
In addition, &amp;lt;scene name=&#039;86/868183/Full_tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; has about 120 &amp;lt;scene name=&#039;86/868183/Cysteine/1&#039;&amp;gt;cysteine residues&amp;lt;/scene&amp;gt; allowing the formation of about 60 disulfide bridge bonds per monomer [[https://www.youtube.com/watch?v=Nuryu1aSqvY&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=11&amp;gt;Disulfide bridge]]. It is therefore a very stable and soluble protein.&lt;br /&gt;
&lt;br /&gt;
=== Structure of hormonogenic sites ===&lt;br /&gt;
Hormonogenic sites are substrates for TH formation. They are formed by 2 or even 3 tyrosines at less than 15 Å from each other, and exposed to the solvent. Of these tyrosines, 1 or 2 are acceptors and 1 is a donor. &lt;br /&gt;
 &lt;br /&gt;
There are 4 hormonogenic sites for &amp;lt;scene name=&#039;86/868183/Full_tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; :&lt;br /&gt;
&lt;br /&gt;
- a &amp;lt;scene name=&#039;86/868183/Site_a/1&#039;&amp;gt;A sites&amp;lt;/scene&amp;gt;, comprising two fixed donor tyrosines Y234 and Y149 and one flexible acceptor tyrosine: Y24 [[https://www.youtube.com/watch?v=98MKFRc6S_w&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=4&amp;gt;Site A]]&lt;br /&gt;
&lt;br /&gt;
- a &amp;lt;scene name=&#039;86/868183/Site_b/3&#039;&amp;gt;B sites&amp;lt;/scene&amp;gt;, including one Y2573 donor and one Y2540 acceptor [[https://www.youtube.com/watch?v=aNd32NLk9Fk&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=3&amp;gt;Site B]]&lt;br /&gt;
&lt;br /&gt;
- a C site, comprising both donor and acceptor tyrosine Y2766&lt;br /&gt;
&lt;br /&gt;
- a &amp;lt;scene name=&#039;86/868183/Sites_d/1&#039;&amp;gt;D sites&amp;lt;/scene&amp;gt;, comprising a Y108 donor and a Y1310 acceptor [[https://www.youtube.com/watch?v=JYUPk59lVVw&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=2&amp;gt;Site D]]&lt;br /&gt;
 &lt;br /&gt;
An acidic Asp (aspartic acid) or Glu (glutamic acid) residue always precedes the acceptor and a lysine is always close to the donor.  &lt;br /&gt;
Except for site C, donors are at the fixed regions of the dimer while acceptors are at the flexible regions.&lt;br /&gt;
&lt;br /&gt;
== Synthesis &amp;lt;ref&amp;gt;PMID: 3681978&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 11581009&amp;lt;/ref&amp;gt; &amp;lt;ref&amp;gt;PMID: 3595599&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 11479128&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;PMID: 6895876&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 3016640&amp;lt;/ref&amp;gt; and acquisition of its structure ==&lt;br /&gt;
=== Role and composition of the thyroid gland ===&lt;br /&gt;
The thyroid gland is an endocrine organ located in the neck that secretes thyroid hormones into the bloodstream. Among them, T4 and T3 are involved in the growth, development and regulation of the metabolism of vertebrates.&lt;br /&gt;
&lt;br /&gt;
The thyroid gland is made up of thyroid vesicles, which are made up of thyroid follicular cells that are arranged around a lumen containing a viscous substance called colloid. The diet is a source of iodide I- ions which, once in the blood, are picked up by the thyroid cells and then partly discharged into the colloid.&lt;br /&gt;
&lt;br /&gt;
=== Expression of the TG gene===&lt;br /&gt;
Thyroid follicular cells synthesize human &amp;lt;scene name=&#039;86/868183/Full_tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; via the TG gene on chromosome 8.&lt;br /&gt;
&lt;br /&gt;
=== Post-translational modifications ===&lt;br /&gt;
TG also undergoes N-glycosylations in the ER at 17 &amp;lt;scene name=&#039;86/868183/Carbohydrated/1&#039;&amp;gt;glycosylation sites&amp;lt;/scene&amp;gt;, so that 10% of its molecular weight is carbohydrate. These modifications enhance its stability and solubility. Indeed, the two monomers are linked not by covalent interactions but via numerous interactions allowed by these N-glycosylations.&lt;br /&gt;
&lt;br /&gt;
=== Folding ===&lt;br /&gt;
Once synthesized, the acquisition of the 3D structure of the &amp;lt;scene name=&#039;86/868183/Full_tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=ZKZy3sVNYAo&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;gt;TG]] is enabled by the ER chaperone proteins of the thyroid follicular cells via a slow process &amp;lt;ref&amp;gt;DOI 10.1042/BJ20021257&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
== Functions ==&lt;br /&gt;
=== TH synthesis ===&lt;br /&gt;
==== Mechanism ====&lt;br /&gt;
Once their 3D structure is acquired, TGs are exported into the colloid by exocytosis thanks to their signal peptide which will be cleaved. This extracellular storage increases the amount of TG stored in the body. &lt;br /&gt;
 &lt;br /&gt;
In the colloid, about 30 tyrosines out of the 66 tyrosines, each consisting of a phenol group, are iodized. The quantity of iodinated tyrosine depends however on the iodide concentration of the colloid. Indeed, one or two iodide ions can be covalently bound to the colloid and thus give a di (DIT) or mono-iodinated (MIT) phenol group. The iodination of the phenol groups is carried out by two membrane enzymes of the follicular cells: the double oxidase (DUOX) synthesizes the hydrogen peroxide H2O2 necessary for thyroid peroxidase (TPO). &lt;br /&gt;
 &lt;br /&gt;
Due to the spatial conformation of &amp;lt;scene name=&#039;86/868183/Full_tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt;, there is a transfer of di or mono iodinated aromatic ring from a donor tyrosine to a close acceptor diiodotyrosine for the 14 tyrosines of the hormonogenic sites. Acceptor iodinated tyrosines are DITs because they are deprotonated due to their 6.5 acid pka facilitating the acceptance reaction leading to the formation of quinol-ether bonds, whereas donor iodinated tyrosines are MITs with a pKa of 8.5&amp;lt;ref&amp;gt;DOI 10.1530/eje.0.1380227&amp;lt;/ref&amp;gt;.&lt;br /&gt;
 &lt;br /&gt;
At the end of the coupling, the donor tyrosines are left with a dehydroalanine.&lt;br /&gt;
 &lt;br /&gt;
Once iodization and coupling have been performed, endocytosis of the colloid to the lysosome occurs. The &amp;lt;scene name=&#039;86/868183/Full_tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; is proteolyzed by cathepsin proteases&amp;lt;ref&amp;gt;DOI 1939080&amp;lt;/ref&amp;gt; and 7 TH are thus released from 14 mono- or di iodinated tyrosines.&lt;br /&gt;
 &lt;br /&gt;
The hormone synthesis function of TG is thus particularly linked to its structure. Moreover, research shows that denaturation or a simple modification of its conformation prevents the formation of TH &amp;lt;ref&amp;gt;PMID:4710237&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 456595&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
==== Control ====&lt;br /&gt;
The synthesis of TH from TG is stimulated by thyroid stimulating hormone (TSH) secreted by the pituitary gland, a gland of the brain. When the TSH receptor is activated, glycosylations leading to the mono iodination of tyrosines promote the synthesis of T3&amp;lt;ref&amp;gt;DOI  3182849&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;PMID: 1370485&amp;lt;/ref&amp;gt;.&lt;br /&gt;
On the other hand, if the amount of hormones is too high, a negative feedback is exerted on this process while a small amount of these hormones exerts a positive feedback.&lt;br /&gt;
&lt;br /&gt;
=== Iodine tank ===&lt;br /&gt;
The complex and particularly stable structure of &amp;lt;scene name=&#039;86/868183/Full_tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; gives it iodide reservoir properties. Indeed, all iodinated but non-hormonoid tyrosines are useful for iodine storage in the thyroid gland. &lt;br /&gt;
&lt;br /&gt;
== Interest in the medical field&amp;lt;ref&amp;gt;DOI 17614775&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 10.1677/ERC-10-0292&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 5773064&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 3681445&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 12089177&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 21134539&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 6814409&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 29984794&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 26595189&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
=== Modification of the TG quantity related to the desease ===&lt;br /&gt;
A healthy subject has between 5 and 25 µg of TG per liter of blood. In case of thyroid dysfunction, this level may increase or decrease. For example, it decreases in the case of congenital athyreosis (insufficiency of the thyroid gland) or prior to a miscarriage due to the presence of anti-TG antibodies, but increases in the case of cancer, thyroiditis, inflammation of the thyroid or autoimmune thyroid diseases AITD &amp;lt;ref&amp;gt;DOI 24147207&amp;lt;/ref&amp;gt;(Grave&#039;s disease, Hashimoto&#039;s thyroiditis).&amp;lt;ref&amp;gt;DOI 11788684&amp;lt;/ref&amp;gt;&lt;br /&gt;
 &lt;br /&gt;
In addition, a decrease in the size or capacity of the thyroid causes a decrease in the synthesis of TH by the &amp;lt;scene name=&#039;86/868183/Full_tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt;, and thus a drop in the blood level of T4 and T3, which in turn causes heart disease, brain disease and abnormalities in the development of the fetus. &amp;lt;ref&amp;gt;DOI 29246752&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 28593684&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 12721190&amp;lt;/ref&amp;gt;&lt;br /&gt;
 &lt;br /&gt;
The variation of the quantity of TG can thus be as much a cause as a consequence of disease.&amp;lt;ref&amp;gt;DOI 17201802&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Use of TG to treat deseases ===&lt;br /&gt;
A classic TSH-stimulated &amp;lt;scene name=&#039;86/868183/Full_tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; measurement or ultrasensitive &amp;lt;scene name=&#039;86/868183/Full_tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; measurement allows to control its rate in a more or less sensitive way and therefore to detect a disease like those mentioned above, to ensure the effectiveness of a treatment and the absence of recurrence and to avoid&lt;br /&gt;
miscarriages.&lt;br /&gt;
Since serum &amp;lt;scene name=&#039;86/868183/Full_tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; levels are correlated with the volume of thyroid tissue, we can also estimate the mass of thyroid tissue to detect hyperthyroidism, a disease related to an enlarged thyroid or, conversely, hypothyroidism.&lt;br /&gt;
 &lt;br /&gt;
For example, thyroidectomy and a iodine-131 therapy can be performed to cure thyroid cancer with an 80% chance. Following removal and iodine-131 therapy, thyroglobulin is this time produced by malignant thyrocytes. As a result, its blood level is indistinguishable from that of a healthy person. &amp;lt;ref&amp;gt;PMID: 762873&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 21649472&amp;lt;/ref&amp;gt;&lt;br /&gt;
But in case of recurrence and persistence of cancer, its level can increase again. Thyroglobulin therefore always serves as a tumor marker allowing us to estimate the risk of recurrence (&amp;gt;2ng/ml) or persistence (&amp;gt;1ng/ml) or remission.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
== References ==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Antoine Lambert</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_1650&amp;diff=3500147</id>
		<title>Sandbox Reserved 1650</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_1650&amp;diff=3500147"/>
		<updated>2022-01-11T19:37:26Z</updated>

		<summary type="html">&lt;p&gt;Antoine Lambert: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;{{Sandbox_Reserved_ESBS20_}}&amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
== Human thyroglobulin (TG) ==&lt;br /&gt;
&amp;lt;StructureSection load=&#039;6scj&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;Human thyroglobulin&#039; scene=&#039;&#039;&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Introduction&#039;&#039;&#039;&lt;br /&gt;
[https://en.wikipedia.org/wiki/Thyroglobulin Human thyroglobulin (TG)] is a precursor of two  [https://en.wikipedia.org/wiki/Thyroid_hormones thyroid hormones] (TH): tetraiodothyronine or [[thyroxine]] (T4) and [[triiodothyronine (T3)]], two thyroid hormones (TH). Its structure is essential for the diagnosis, treatment and monitoring of thyroid-related diseases.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== Composition and 3D structure &amp;lt;ref&amp;gt;DOI 32025030&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
=== Global structure === &lt;br /&gt;
&#039;&#039;&#039;Human thyroglobulin&#039;&#039;&#039; is a dimeric glycoprotein (see a &amp;lt;scene name=&#039;86/868183/Monomer_tg/1&#039;&amp;gt;monomer&amp;lt;/scene&amp;gt; and its stacking with the other)consisting of 2749 amino acid residues with a molecular weight of 660 kDa. The average size of the dimer is 120x235 Å. &lt;br /&gt;
 &lt;br /&gt;
Each of its monomers comprises 5 distinct regions on which approximately 66 &amp;lt;scene name=&#039;86/868183/Tyr/2&#039;&amp;gt;tyrosines&amp;lt;/scene&amp;gt; (chain A in blue, chain B in green, chain C in dark red, chain D in light red) are distributed. These are the regions : &lt;br /&gt;
&amp;lt;scene name=&#039;86/868183/Ntd/4&#039;&amp;gt;N-terminal domain&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=MuFHlCZCetU&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=5&amp;gt;NTD]], &amp;lt;scene name=&#039;86/868183/Core/3&#039;&amp;gt;Core&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=Lx1G1KGxKN8&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=8&amp;gt;CORE]], &amp;lt;scene name=&#039;86/868183/Flap/2&#039;&amp;gt;Flap&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=vk60Rdyo28A&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=6&amp;gt;FLAP]], &amp;lt;scene name=&#039;86/868183/Arm/2&#039;&amp;gt;Arm&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=XzeTjQKfO0E&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=9&amp;gt;ARM]] and &amp;lt;scene name=&#039;86/868183/Ctd/2&#039;&amp;gt;C-terminal domain&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=N-mg_xj-deI&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=7&amp;gt;CTD]].&lt;br /&gt;
 &lt;br /&gt;
In addition, &amp;lt;scene name=&#039;86/868183/Full_tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; has about 120 &amp;lt;scene name=&#039;86/868183/Cysteine/1&#039;&amp;gt;cysteine residues&amp;lt;/scene&amp;gt; allowing the formation of about 60 disulfide bridge bonds per monomer [[https://www.youtube.com/watch?v=Nuryu1aSqvY&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=11&amp;gt;Disulfide bridge]]. It is therefore a very stable and soluble protein.&lt;br /&gt;
&lt;br /&gt;
=== Structure of hormonogenic sites ===&lt;br /&gt;
Hormonogenic sites are substrates for TH formation. They are formed by 2 or even 3 tyrosines at less than 15 Å from each other, and exposed to the solvent. Of these tyrosines, 1 or 2 are acceptors and 1 is a donor. &lt;br /&gt;
 &lt;br /&gt;
There are 4 hormonogenic sites for &amp;lt;scene name=&#039;86/868183/Full_tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; :&lt;br /&gt;
&lt;br /&gt;
- a &amp;lt;scene name=&#039;86/868183/Site_a/1&#039;&amp;gt;A sites&amp;lt;/scene&amp;gt;, comprising two fixed donor tyrosines Y234 and Y149 and one flexible acceptor tyrosine: Y24 [[https://www.youtube.com/watch?v=98MKFRc6S_w&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=4&amp;gt;Site A]]&lt;br /&gt;
&lt;br /&gt;
- a &amp;lt;scene name=&#039;86/868183/Site_b/3&#039;&amp;gt;B sites&amp;lt;/scene&amp;gt;, including one Y2573 donor and one Y2540 acceptor [[https://www.youtube.com/watch?v=aNd32NLk9Fk&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=3&amp;gt;Site B]]&lt;br /&gt;
&lt;br /&gt;
- a C site, comprising both donor and acceptor tyrosine Y2766&lt;br /&gt;
&lt;br /&gt;
- a &amp;lt;scene name=&#039;86/868183/Sites_d/1&#039;&amp;gt;D sites&amp;lt;/scene&amp;gt;, comprising a Y108 donor and a Y1310 acceptor [[https://www.youtube.com/watch?v=JYUPk59lVVw&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=2&amp;gt;Site D]]&lt;br /&gt;
 &lt;br /&gt;
An acidic Asp (aspartic acid) or Glu (glutamic acid) residue always precedes the acceptor and a lysine is always close to the donor.  &lt;br /&gt;
Except for site C, donors are at the fixed regions of the dimer while acceptors are at the flexible regions.&lt;br /&gt;
&lt;br /&gt;
== Synthesis &amp;lt;ref&amp;gt;PMID: 3681978&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 11581009&amp;lt;/ref&amp;gt; &amp;lt;ref&amp;gt;PMID: 3595599&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 11479128&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;PMID: 6895876&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 3016640&amp;lt;/ref&amp;gt; and acquisition of its structure ==&lt;br /&gt;
=== Role and composition of the thyroid gland ===&lt;br /&gt;
The thyroid gland is an endocrine organ located in the neck that secretes thyroid hormones into the bloodstream. Among them, T4 and T3 are involved in the growth, development and regulation of the metabolism of vertebrates.&lt;br /&gt;
&lt;br /&gt;
The thyroid gland is made up of thyroid vesicles, which are made up of thyroid follicular cells that are arranged around a lumen containing a viscous substance called colloid. The diet is a source of iodide I- ions which, once in the blood, are picked up by the thyroid cells and then partly discharged into the colloid.&lt;br /&gt;
&lt;br /&gt;
=== Expression of the TG gene===&lt;br /&gt;
Thyroid follicular cells synthesize human &amp;lt;scene name=&#039;86/868183/Full_tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; via the TG gene on chromosome 8.&lt;br /&gt;
&lt;br /&gt;
=== Post-translational modifications ===&lt;br /&gt;
TG also undergoes N-glycosylations in the ER at 17 &amp;lt;scene name=&#039;86/868183/Carbohydrated/1&#039;&amp;gt;glycosylation sites&amp;lt;/scene&amp;gt;, so that 10% of its molecular weight is carbohydrate. These modifications enhance its stability and solubility. Indeed, the two monomers are linked not by covalent interactions but via numerous interactions allowed by these N-glycosylations.&lt;br /&gt;
&lt;br /&gt;
=== Folding ===&lt;br /&gt;
Once synthesized, the acquisition of the 3D structure of the &amp;lt;scene name=&#039;86/868183/Full_tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=ZKZy3sVNYAo&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;gt;TG]] is enabled by the ER chaperone proteins of the thyroid follicular cells via a slow process &amp;lt;ref&amp;gt;DOI 10.1042/BJ20021257&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
== Functions ==&lt;br /&gt;
=== TH synthesis ===&lt;br /&gt;
==== Mechanism ====&lt;br /&gt;
Once their 3D structure is acquired, TGs are exported into the colloid by exocytosis thanks to their signal peptide which will be cleaved. This extracellular storage increases the amount of TG stored in the body. &lt;br /&gt;
 &lt;br /&gt;
In the colloid, about 30 tyrosines out of the 66 tyrosines, each consisting of a phenol group, are iodized. The quantity of iodinated tyrosine depends however on the iodide concentration of the colloid. Indeed, one or two iodide ions can be covalently bound to the colloid and thus give a di (DIT) or mono-iodinated (MIT) phenol group. The iodination of the phenol groups is carried out by two membrane enzymes of the follicular cells: the double oxidase (DUOX) synthesizes the hydrogen peroxide H2O2 necessary for thyroid peroxidase (TPO). &lt;br /&gt;
 &lt;br /&gt;
Due to the spatial conformation of &amp;lt;scene name=&#039;86/868183/Full_tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt;, there is a transfer of di or mono iodinated aromatic ring from a donor tyrosine to a close acceptor diiodotyrosine for the 14 tyrosines of the hormonogenic sites. Acceptor iodinated tyrosines are DITs because they are deprotonated due to their 6.5 acid pka facilitating the acceptance reaction leading to the formation of quinol-ether bonds, whereas donor iodinated tyrosines are MITs with a pKa of 8.5&amp;lt;ref&amp;gt;DOI 10.1530/eje.0.1380227&amp;lt;/ref&amp;gt;.&lt;br /&gt;
 &lt;br /&gt;
At the end of the coupling, the donor tyrosines are left with a dehydroalanine.&lt;br /&gt;
 &lt;br /&gt;
Once iodization and coupling have been performed, endocytosis of the colloid to the lysosome occurs. The &amp;lt;scene name=&#039;86/868183/Full_tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; is proteolyzed by cathepsin proteases&amp;lt;ref&amp;gt;DOI 1939080&amp;lt;/ref&amp;gt; and 7 TH are thus released from 14 mono- or di iodinated tyrosines.&lt;br /&gt;
 &lt;br /&gt;
The hormone synthesis function of TG is thus particularly linked to its structure. Moreover, research shows that denaturation or a simple modification of its conformation prevents the formation of TH &amp;lt;ref&amp;gt;PMID:4710237&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 456595&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
==== Control ====&lt;br /&gt;
The synthesis of TH from TG is stimulated by thyroid stimulating hormone (TSH) secreted by the pituitary gland, a gland of the brain. When the TSH receptor is activated, glycosylations leading to the mono iodination of tyrosines promote the synthesis of T3&amp;lt;ref&amp;gt;DOI  3182849&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;PMID: 1370485&amp;lt;/ref&amp;gt;.&lt;br /&gt;
On the other hand, if the amount of hormones is too high, a negative feedback is exerted on this process while a small amount of these hormones exerts a positive feedback.&lt;br /&gt;
&lt;br /&gt;
=== Iodine tank ===&lt;br /&gt;
The complex and particularly stable structure of &amp;lt;scene name=&#039;86/868183/Full_tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; gives it iodide reservoir properties. Indeed, all iodinated but non-hormonoid tyrosines are useful for iodine storage in the thyroid gland. &lt;br /&gt;
&lt;br /&gt;
== Interest in the medical field&amp;lt;ref&amp;gt;DOI 17614775&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 10.1677/ERC-10-0292&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 5773064&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 3681445&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 12089177&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 21134539&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 6814409&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 29984794&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 26595189&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
=== Modification of the TG quantity related to the desease ===&lt;br /&gt;
A healthy subject has between 5 and 25 µg of TG per liter of blood. In case of thyroid dysfunction, this level may increase or decrease. For example, it decreases in the case of congenital athyreosis (insufficiency of the thyroid gland) or prior to a miscarriage due to the presence of anti-TG antibodies, but increases in the case of cancer, thyroiditis, inflammation of the thyroid or autoimmune thyroid diseases AITD &amp;lt;ref&amp;gt;DOI 24147207&amp;lt;/ref&amp;gt;(Grave&#039;s disease, Hashimoto&#039;s thyroiditis).&amp;lt;ref&amp;gt;DOI 11788684&amp;lt;/ref&amp;gt;&lt;br /&gt;
 &lt;br /&gt;
In addition, a decrease in the size or capacity of the thyroid causes a decrease in the synthesis of TH by the &amp;lt;scene name=&#039;86/868183/Full_tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt;, and thus a drop in the blood level of T4 and T3, which in turn causes heart disease, brain disease and abnormalities in the development of the fetus. &amp;lt;ref&amp;gt;DOI 29246752&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 28593684&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 12721190&amp;lt;/ref&amp;gt;&lt;br /&gt;
 &lt;br /&gt;
The variation of the quantity of TG can thus be as much a cause as a consequence of disease.&amp;lt;ref&amp;gt;DOI 17201802&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Use of TG to treat deseases ===&lt;br /&gt;
A classic TSH-stimulated &amp;lt;scene name=&#039;86/868183/Full_tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; measurement or ultrasensitive &amp;lt;scene name=&#039;86/868183/Full_tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; measurement allows to control its rate in a more or less sensitive way and therefore to detect a disease like those mentioned above, to ensure the effectiveness of a treatment and the absence of recurrence and to avoid&lt;br /&gt;
miscarriages.&lt;br /&gt;
Since serum &amp;lt;scene name=&#039;86/868183/Full_tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; levels are correlated with the volume of thyroid tissue, we can also estimate the mass of thyroid tissue to detect hyperthyroidism, a disease related to an enlarged thyroid or, conversely, hypothyroidism.&lt;br /&gt;
 &lt;br /&gt;
For example, thyroidectomy and a iodine-131 therapy can be performed to cure thyroid cancer with an 80% chance. Following removal and iodine-131 therapy, thyroglobulin is this time produced by malignant thyrocytes. As a result, its blood level is indistinguishable from that of a healthy person. &amp;lt;ref&amp;gt;PMID: 762873&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 21649472&amp;lt;/ref&amp;gt;&lt;br /&gt;
But in case of recurrence and persistence of cancer, its level can increase again. Thyroglobulin therefore always serves as a tumor marker allowing us to estimate the risk of recurrence (&amp;gt;2ng/ml) or persistence (&amp;gt;1ng/ml) or remission.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
== References ==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Antoine Lambert</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=DNA_in_action&amp;diff=3500075</id>
		<title>DNA in action</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=DNA_in_action&amp;diff=3500075"/>
		<updated>2022-01-11T08:55:26Z</updated>

		<summary type="html">&lt;p&gt;Antoine Lambert: Undo revision 3500000 by Antoine Lambert (Talk)&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;==The molecule of life...The DNA!==&lt;br /&gt;
====DNA Model visible in the window is an interactive molecule [Use normal gestures like pinch to zoom or drag to move freely]====&lt;br /&gt;
&lt;br /&gt;
==Interactive B-DNA molecule==&lt;br /&gt;
&amp;lt;StructureSection load=&#039;B-dna.pdb&#039; size=&#039;400&#039; side=&#039;right&#039; caption=&#039;B-DNA molecule&#039; scene=&#039;&#039;&amp;gt;&lt;br /&gt;
Colours assigned to each atoms:&lt;br /&gt;
    Hydrogen (White)&lt;br /&gt;
    Carbon (Grey)&lt;br /&gt;
    Oxygen (Red)&lt;br /&gt;
    Nitrogen (Blue)&lt;br /&gt;
    Phosphorus (Orange)&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
*To view animation of the above DNA molecule: Go https://youtu.be/Giufz-xvzQg&lt;br /&gt;
&lt;br /&gt;
*The Model of DNA (B-DNA) is built using online sequencing software available at [http://www.scfbio-iitd.res.in/software/drugdesign/bdna.jsp/ The Supercomputing Facility for Bioinformatics &amp;amp; Computational Biology (SCFBio), IIT Delhi]&lt;br /&gt;
&lt;br /&gt;
This work is licensed under a [https://creativecommons.org/licenses/by/4.0/ Creative Commons Attribution 4.0 International License.]&lt;/div&gt;</summary>
		<author><name>Antoine Lambert</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=DNA_in_action&amp;diff=3500000</id>
		<title>DNA in action</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=DNA_in_action&amp;diff=3500000"/>
		<updated>2022-01-11T07:08:50Z</updated>

		<summary type="html">&lt;p&gt;Antoine Lambert: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;==The molecule of life...The DNA!==&lt;br /&gt;
====DNA Model visible in the window is an interactive molecule [Use normal gestures like pinch to zoom or drag to move freely]====&lt;br /&gt;
&lt;br /&gt;
==Interactive B-DNA molecule==&lt;br /&gt;
&amp;lt;StructureSection load=&#039;B-dna.pdb&#039; size=&#039;400&#039; side=&#039;right&#039; caption=&#039;B-DNA molecule&#039; scene=&#039;&#039;&amp;gt;&lt;br /&gt;
Colours assigned to each atoms:&lt;br /&gt;
    Hydrogen (White)&lt;br /&gt;
    Carbon (Grey)&lt;br /&gt;
    Oxygen (Red)&lt;br /&gt;
    Nitrogen (Blue)&lt;br /&gt;
    Phosphorus (Orange)&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==Test debug==&lt;br /&gt;
&amp;lt;StructureSection load=&#039;6scj&#039; size=&#039;350&#039; side=&#039;right&#039; caption=&#039;test&#039; scene=&#039;&#039;&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Anything in this section will appear adjacent to the 3D structure and will be scrollable.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
*To view animation of the above DNA molecule: Go https://youtu.be/Giufz-xvzQg&lt;br /&gt;
&lt;br /&gt;
*The Model of DNA (B-DNA) is built using online sequencing software available at [http://www.scfbio-iitd.res.in/software/drugdesign/bdna.jsp/ The Supercomputing Facility for Bioinformatics &amp;amp; Computational Biology (SCFBio), IIT Delhi]&lt;br /&gt;
&lt;br /&gt;
This work is licensed under a [https://creativecommons.org/licenses/by/4.0/ Creative Commons Attribution 4.0 International License.]&lt;/div&gt;</summary>
		<author><name>Antoine Lambert</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_1650&amp;diff=3499997</id>
		<title>Sandbox Reserved 1650</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_1650&amp;diff=3499997"/>
		<updated>2022-01-10T22:27:38Z</updated>

		<summary type="html">&lt;p&gt;Antoine Lambert: little corrections&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;{{Sandbox_Reserved_ESBS20_}}&amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
== Human thyroglobulin (TG) ==&lt;br /&gt;
&amp;lt;StructureSection load=&#039;6scj&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;Human thyroglobulin&#039; scene=&#039;&#039;&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Introduction&#039;&#039;&#039;&lt;br /&gt;
[https://en.wikipedia.org/wiki/Thyroglobulin Human thyroglobulin (TG)] is a precursor of two  [https://en.wikipedia.org/wiki/Thyroid_hormones thyroid hormones] (TH): tetraiodothyronine or [[thyroxine]] (T4) and [[triiodothyronine (T3)]], two thyroid hormones (TH). Its structure is essential for the diagnosis, treatment and monitoring of thyroid-related diseases.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== Composition and 3D structure &amp;lt;ref&amp;gt;DOI 32025030&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
=== Global structure === &lt;br /&gt;
Human thyroglobulin is a dimeric glycoprotein consisting of 2749 amino acid residues with a molecular weight of 660 kDa. The average size of the dimer is 120x235 Å. &lt;br /&gt;
 &lt;br /&gt;
Each of its monomers comprises 5 distinct regions on which approximately 66 &amp;lt;scene name=&#039;86/868183/Tyr/2&#039;&amp;gt;tyrosines&amp;lt;/scene&amp;gt; (chain A in blue, chain B in green, chain C in dark red, chain D in light red) are distributed. These are the regions : &lt;br /&gt;
&amp;lt;scene name=&#039;86/868183/Ntd/4&#039;&amp;gt;N-terminal domain&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=MuFHlCZCetU&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=5&amp;gt;NTD]], &amp;lt;scene name=&#039;86/868183/Core/3&#039;&amp;gt;Core&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=Lx1G1KGxKN8&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=8&amp;gt;CORE]], &amp;lt;scene name=&#039;86/868183/Flap/2&#039;&amp;gt;Flap&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=vk60Rdyo28A&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=6&amp;gt;FLAP]], &amp;lt;scene name=&#039;86/868183/Arm/2&#039;&amp;gt;Arm&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=XzeTjQKfO0E&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=9&amp;gt;ARM]] and &amp;lt;scene name=&#039;86/868183/Ctd/2&#039;&amp;gt;C-terminal domain&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=N-mg_xj-deI&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=7&amp;gt;CTD]].&lt;br /&gt;
 &lt;br /&gt;
In addition, &amp;lt;scene name=&#039;86/868183/Full_tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; has about 120 &amp;lt;scene name=&#039;86/868183/Cysteine/1&#039;&amp;gt;cysteine residues&amp;lt;/scene&amp;gt; allowing the formation of about 60 disulfide bridge bonds per monomer [[https://www.youtube.com/watch?v=Nuryu1aSqvY&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=11&amp;gt;Disulfide bridge]]. It is therefore a very stable and soluble protein.&lt;br /&gt;
&lt;br /&gt;
=== Structure of hormonogenic sites ===&lt;br /&gt;
Hormonogenic sites are substrates for TH formation. They are formed by 2 or even 3 tyrosines at less than 15 Å from each other, and exposed to the solvent. Of these tyrosines, 1 or 2 are acceptors and 1 is a donor. &lt;br /&gt;
 &lt;br /&gt;
There are 4 hormonogenic sites for &amp;lt;scene name=&#039;86/868183/Full_tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; :&lt;br /&gt;
&lt;br /&gt;
- a &amp;lt;scene name=&#039;86/868183/Site_a/1&#039;&amp;gt;A sites&amp;lt;/scene&amp;gt;, comprising two fixed donor tyrosines Y234 and Y149 and one flexible acceptor tyrosine: Y24 [[https://www.youtube.com/watch?v=98MKFRc6S_w&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=4&amp;gt;Site A]]&lt;br /&gt;
&lt;br /&gt;
- a &amp;lt;scene name=&#039;86/868183/Site_b/3&#039;&amp;gt;B sites&amp;lt;/scene&amp;gt;, including one Y2573 donor and one Y2540 acceptor [[https://www.youtube.com/watch?v=aNd32NLk9Fk&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=3&amp;gt;Site B]]&lt;br /&gt;
&lt;br /&gt;
- a C site, comprising both donor and acceptor tyrosine Y2766&lt;br /&gt;
&lt;br /&gt;
- a &amp;lt;scene name=&#039;86/868183/Sites_d/1&#039;&amp;gt;D sites&amp;lt;/scene&amp;gt;, comprising a Y108 donor and a Y1310 acceptor [[https://www.youtube.com/watch?v=JYUPk59lVVw&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=2&amp;gt;Site D]]&lt;br /&gt;
 &lt;br /&gt;
An acidic Asp (aspartic acid) or Glu (glutamic acid) residue always precedes the acceptor and a lysine is always close to the donor.  &lt;br /&gt;
Except for site C, donors are at the fixed regions of the dimer while acceptors are at the flexible regions.&lt;br /&gt;
&lt;br /&gt;
== Synthesis &amp;lt;ref&amp;gt;PMID: 3681978&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 11581009&amp;lt;/ref&amp;gt; &amp;lt;ref&amp;gt;PMID: 3595599&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 11479128&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;PMID: 6895876&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 3016640&amp;lt;/ref&amp;gt; and acquisition of its structure ==&lt;br /&gt;
=== Role and composition of the thyroid gland ===&lt;br /&gt;
The thyroid gland is an endocrine organ located in the neck that secretes thyroid hormones into the bloodstream. Among them, T4 and T3 are involved in the growth, development and regulation of the metabolism of vertebrates.&lt;br /&gt;
&lt;br /&gt;
The thyroid gland is made up of thyroid vesicles, which are made up of thyroid follicular cells that are arranged around a lumen containing a viscous substance called colloid. The diet is a source of iodide I- ions which, once in the blood, are picked up by the thyroid cells and then partly discharged into the colloid.&lt;br /&gt;
&lt;br /&gt;
=== Expression of the TG gene===&lt;br /&gt;
Thyroid follicular cells synthesize human &amp;lt;scene name=&#039;86/868183/Full_tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; via the TG gene on chromosome 8.&lt;br /&gt;
&lt;br /&gt;
=== Post-translational modifications ===&lt;br /&gt;
TG also undergoes N-glycosylations in the ER at 17 &amp;lt;scene name=&#039;86/868183/Carbohydrated/1&#039;&amp;gt;glycosylation sites&amp;lt;/scene&amp;gt;, so that 10% of its molecular weight is carbohydrate. These modifications enhance its stability and solubility. Indeed, the two monomers are linked not by covalent interactions but via numerous interactions allowed by these N-glycosylations.&lt;br /&gt;
&lt;br /&gt;
=== Folding ===&lt;br /&gt;
Once synthesized, the acquisition of the 3D structure of the &amp;lt;scene name=&#039;86/868183/Full_tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=ZKZy3sVNYAo&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;gt;TG]] is enabled by the ER chaperone proteins of the thyroid follicular cells via a slow process &amp;lt;ref&amp;gt;DOI 10.1042/BJ20021257&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
== Functions ==&lt;br /&gt;
=== TH synthesis ===&lt;br /&gt;
==== Mechanism ====&lt;br /&gt;
Once their 3D structure is acquired, TGs are exported into the colloid by exocytosis thanks to their signal peptide which will be cleaved. This extracellular storage increases the amount of TG stored in the body. &lt;br /&gt;
 &lt;br /&gt;
In the colloid, about 30 tyrosines out of the 66 tyrosines, each consisting of a phenol group, are iodized. The quantity of iodinated tyrosine depends however on the iodide concentration of the colloid. Indeed, one or two iodide ions can be covalently bound to the colloid and thus give a di (DIT) or mono-iodinated (MIT) phenol group. The iodination of the phenol groups is carried out by two membrane enzymes of the follicular cells: the double oxidase (DUOX) synthesizes the hydrogen peroxide H2O2 necessary for thyroid peroxidase (TPO). &lt;br /&gt;
 &lt;br /&gt;
Due to the spatial conformation of &amp;lt;scene name=&#039;86/868183/Full_tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt;, there is a transfer of di or mono iodinated aromatic ring from a donor tyrosine to a close acceptor diiodotyrosine for the 14 tyrosines of the hormonogenic sites. Acceptor iodinated tyrosines are DITs because they are deprotonated due to their 6.5 acid pka facilitating the acceptance reaction leading to the formation of quinol-ether bonds, whereas donor iodinated tyrosines are MITs with a pKa of 8.5&amp;lt;ref&amp;gt;DOI 10.1530/eje.0.1380227&amp;lt;/ref&amp;gt;.&lt;br /&gt;
 &lt;br /&gt;
At the end of the coupling, the donor tyrosines are left with a dehydroalanine.&lt;br /&gt;
 &lt;br /&gt;
Once iodization and coupling have been performed, endocytosis of the colloid to the lysosome occurs. The &amp;lt;scene name=&#039;86/868183/Full_tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; is proteolyzed by cathepsin proteases&amp;lt;ref&amp;gt;DOI 1939080&amp;lt;/ref&amp;gt; and 7 TH are thus released from 14 mono- or di iodinated tyrosines.&lt;br /&gt;
 &lt;br /&gt;
The hormone synthesis function of TG is thus particularly linked to its structure. Moreover, research shows that denaturation or a simple modification of its conformation prevents the formation of TH &amp;lt;ref&amp;gt;PMID:4710237&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 456595&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
==== Control ====&lt;br /&gt;
The synthesis of TH from TG is stimulated by thyroid stimulating hormone (TSH) secreted by the pituitary gland, a gland of the brain. When the TSH receptor is activated, glycosylations leading to the mono iodination of tyrosines promote the synthesis of T3&amp;lt;ref&amp;gt;DOI  3182849&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;PMID: 1370485&amp;lt;/ref&amp;gt;.&lt;br /&gt;
On the other hand, if the amount of hormones is too high, a negative feedback is exerted on this process while a small amount of these hormones exerts a positive feedback.&lt;br /&gt;
&lt;br /&gt;
=== Iodine tank ===&lt;br /&gt;
The complex and particularly stable structure of &amp;lt;scene name=&#039;86/868183/Full_tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; gives it iodide reservoir properties. Indeed, all iodinated but non-hormonoid tyrosines are useful for iodine storage in the thyroid gland. &lt;br /&gt;
&lt;br /&gt;
== Interest in the medical field&amp;lt;ref&amp;gt;DOI 17614775&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 10.1677/ERC-10-0292&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 5773064&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 3681445&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 12089177&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 21134539&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 6814409&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 29984794&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 26595189&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
=== Modification of the TG quantity related to the desease ===&lt;br /&gt;
A healthy subject has between 5 and 25 µg of TG per liter of blood. In case of thyroid dysfunction, this level may increase or decrease. For example, it decreases in the case of congenital athyreosis (insufficiency of the thyroid gland) or prior to a miscarriage due to the presence of anti-TG antibodies, but increases in the case of cancer, thyroiditis, inflammation of the thyroid or autoimmune thyroid diseases AITD &amp;lt;ref&amp;gt;DOI 24147207&amp;lt;/ref&amp;gt;(Grave&#039;s disease, Hashimoto&#039;s thyroiditis).&amp;lt;ref&amp;gt;DOI 11788684&amp;lt;/ref&amp;gt;&lt;br /&gt;
 &lt;br /&gt;
In addition, a decrease in the size or capacity of the thyroid causes a decrease in the synthesis of TH by the &amp;lt;scene name=&#039;86/868183/Full_tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt;, and thus a drop in the blood level of T4 and T3, which in turn causes heart disease, brain disease and abnormalities in the development of the fetus. &amp;lt;ref&amp;gt;DOI 29246752&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 28593684&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 12721190&amp;lt;/ref&amp;gt;&lt;br /&gt;
 &lt;br /&gt;
The variation of the quantity of TG can thus be as much a cause as a consequence of disease.&amp;lt;ref&amp;gt;DOI 17201802&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Use of TG to treat deseases ===&lt;br /&gt;
A classic TSH-stimulated &amp;lt;scene name=&#039;86/868183/Full_tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; measurement or ultrasensitive &amp;lt;scene name=&#039;86/868183/Full_tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; measurement allows to control its rate in a more or less sensitive way and therefore to detect a disease like those mentioned above, to ensure the effectiveness of a treatment and the absence of recurrence and to avoid&lt;br /&gt;
miscarriages.&lt;br /&gt;
Since serum &amp;lt;scene name=&#039;86/868183/Full_tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; levels are correlated with the volume of thyroid tissue, we can also estimate the mass of thyroid tissue to detect hyperthyroidism, a disease related to an enlarged thyroid or, conversely, hypothyroidism.&lt;br /&gt;
 &lt;br /&gt;
For example, thyroidectomy and a iodine-131 therapy can be performed to cure thyroid cancer with an 80% chance. Following removal and iodine-131 therapy, thyroglobulin is this time produced by malignant thyrocytes. As a result, its blood level is indistinguishable from that of a healthy person. &amp;lt;ref&amp;gt;PMID: 762873&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 21649472&amp;lt;/ref&amp;gt;&lt;br /&gt;
But in case of recurrence and persistence of cancer, its level can increase again. Thyroglobulin therefore always serves as a tumor marker allowing us to estimate the risk of recurrence (&amp;gt;2ng/ml) or persistence (&amp;gt;1ng/ml) or remission.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
== References ==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Antoine Lambert</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_1650&amp;diff=3499958</id>
		<title>Sandbox Reserved 1650</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_1650&amp;diff=3499958"/>
		<updated>2022-01-09T15:11:35Z</updated>

		<summary type="html">&lt;p&gt;Antoine Lambert: Organisation references&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;{{Sandbox_Reserved_ESBS20_}}&amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
== Human thyroglobulin (TG) ==&lt;br /&gt;
&amp;lt;StructureSection load=&#039;6scj&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;Human thyroglobulin&#039; scene=&#039;&#039;&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Introduction&#039;&#039;&#039;&lt;br /&gt;
[https://en.wikipedia.org/wiki/Thyroglobulin Human thyroglobulin (TG)] is a precursor of two  [https://en.wikipedia.org/wiki/Thyroid_hormones thyroid hormones] (TH): tetraiodothyronine or [[thyroxine]] (T4) and [[triiodothyronine (T3)]], two thyroid hormones (TH). Its structure is essential for the diagnosis, treatment and monitoring of thyroid-related diseases.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== Composition and 3D structure &amp;lt;ref&amp;gt;DOI 32025030&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
=== Global structure === &lt;br /&gt;
Human thyroglobulin is a dimeric glycoprotein consisting of 2749 amino acid residues with a molecular weight of 660 kDa. The average size of the dimer is 120x235 Å. &lt;br /&gt;
 &lt;br /&gt;
Each of its monomers comprises 5 distinct regions on which approximately 66 &amp;lt;scene name=&#039;86/868183/Tyr/2&#039;&amp;gt;tyrosines&amp;lt;/scene&amp;gt; (chain A in blue, chain B in green, chain C in dark red, chain D in light red) are distributed. These are the regions : &lt;br /&gt;
&amp;lt;scene name=&#039;86/868183/Ntd/4&#039;&amp;gt;N-terminal domain&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=MuFHlCZCetU&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=5&amp;gt;NTD]], &amp;lt;scene name=&#039;86/868183/Core/3&#039;&amp;gt;Core&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=Lx1G1KGxKN8&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=8&amp;gt;CORE]], &amp;lt;scene name=&#039;86/868183/Flap/2&#039;&amp;gt;Flap&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=vk60Rdyo28A&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=6&amp;gt;FLAP]], &amp;lt;scene name=&#039;86/868183/Arm/2&#039;&amp;gt;Arm&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=XzeTjQKfO0E&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=9&amp;gt;ARM]] and &amp;lt;scene name=&#039;86/868183/Ctd/2&#039;&amp;gt;C-terminal domain&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=N-mg_xj-deI&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=7&amp;gt;CTD]].&lt;br /&gt;
 &lt;br /&gt;
In addition, &amp;lt;scene name=&#039;86/868183/Full_tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; has about 120 &amp;lt;scene name=&#039;86/868183/Cysteine/1&#039;&amp;gt;cysteine residues&amp;lt;/scene&amp;gt; allowing the formation of about 60 disulfide bridge bonds per monomer [[https://www.youtube.com/watch?v=Nuryu1aSqvY&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=11&amp;gt;Disulfide bridge]]. It is therefore a very stable and soluble protein.&lt;br /&gt;
&lt;br /&gt;
=== Structure of hormonogenic sites ===&lt;br /&gt;
Hormonogenic sites are responsible for the formation of one TH each. They are formed by 2 or even 3 tyrosines at less than 15 Å from each other, and exposed to the solvent. Of these tyrosines, 1 or 2 are acceptors and 1 is a donor. &lt;br /&gt;
 &lt;br /&gt;
There are 7 hormonogenic sites for &amp;lt;scene name=&#039;86/868183/Full_tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; :&lt;br /&gt;
&lt;br /&gt;
- two &amp;lt;scene name=&#039;86/868183/Site_a/1&#039;&amp;gt;A sites&amp;lt;/scene&amp;gt;, comprising two fixed donor tyrosines Y234 and Y149 and one flexible acceptor tyrosine: T24 [[https://www.youtube.com/watch?v=98MKFRc6S_w&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=4&amp;gt;Site A]]&lt;br /&gt;
&lt;br /&gt;
- two &amp;lt;scene name=&#039;86/868183/Site_b/3&#039;&amp;gt;B sites&amp;lt;/scene&amp;gt;, including one Y2573 donor and one Y2540 acceptor [[https://www.youtube.com/watch?v=aNd32NLk9Fk&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=3&amp;gt;Site B]]&lt;br /&gt;
&lt;br /&gt;
- a C site, comprising both donor and acceptor tyrosine Y2766&lt;br /&gt;
&lt;br /&gt;
- two &amp;lt;scene name=&#039;86/868183/Sites_d/1&#039;&amp;gt;D sites&amp;lt;/scene&amp;gt;, comprising a Y108 donor and a Y1310 acceptor [[https://www.youtube.com/watch?v=JYUPk59lVVw&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=2&amp;gt;Site D]]&lt;br /&gt;
 &lt;br /&gt;
An acidic Asp (aspartic acid) or Glu (glutamic acid) residue always precedes the acceptor and a lysine is always close to the donor.  &lt;br /&gt;
Except for site C, donors are at the fixed regions of the dimer while acceptors are at the flexible regions.&lt;br /&gt;
&lt;br /&gt;
== Synthesis &amp;lt;ref&amp;gt;PMID: 3681978&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 11581009&amp;lt;/ref&amp;gt; &amp;lt;ref&amp;gt;PMID: 3595599&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 11479128&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;PMID: 6895876&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 3016640&amp;lt;/ref&amp;gt; and acquisition of its structure ==&lt;br /&gt;
=== Role and composition of the thyroid gland ===&lt;br /&gt;
The thyroid gland is an endocrine organ located in the neck that secretes thyroid hormones into the bloodstream. Among them, T4 and T3 are involved in the growth, development and regulation of the metabolism of vertebrates.&lt;br /&gt;
&lt;br /&gt;
The thyroid gland is made up of thyroid vesicles, which are made up of thyroid follicular cells that are arranged around a lumen containing a viscous substance called colloid. The diet is a source of iodide I- ions which, once in the blood, are picked up by the thyroid cells and then partly discharged into the colloid.&lt;br /&gt;
&lt;br /&gt;
=== Expression of the TG gene===&lt;br /&gt;
Thyroid follicular cells synthesize human &amp;lt;scene name=&#039;86/868183/Full_tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; via the TG gene on chromosome 8.&lt;br /&gt;
&lt;br /&gt;
=== Post-translational modifications ===&lt;br /&gt;
TG also undergoes N-glycosylations in the ER at 17 &amp;lt;scene name=&#039;86/868183/Carbohydrated/1&#039;&amp;gt;glycosylation sites&amp;lt;/scene&amp;gt;, so that 10% of its molecular weight is carbohydrate. These modifications enhance its stability and solubility. Indeed, the two monomers are linked not by covalent interactions but via numerous interactions allowed by these N-glycosylations.&lt;br /&gt;
&lt;br /&gt;
=== Folding ===&lt;br /&gt;
Once synthesized, the acquisition of the 3D structure of the &amp;lt;scene name=&#039;86/868183/Full_tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=ZKZy3sVNYAo&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;gt;TG]] is enabled by the ER chaperone proteins of the thyroid follicular cells via a slow process &amp;lt;ref&amp;gt;DOI 10.1042/BJ20021257&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
== Functions ==&lt;br /&gt;
=== TH synthesis ===&lt;br /&gt;
==== Mechanism ====&lt;br /&gt;
Once their 3D structure is acquired, TGs are exported into the colloid by exocytosis thanks to their signal peptide which will be cleaved. This extracellular storage increases the amount of TG stored in the body. &lt;br /&gt;
 &lt;br /&gt;
In the colloid, about 30 tyrosines out of the 66 tyrosines, each consisting of a phenol group, are iodized. The quantity of iodinated tyrosine depends however on the iodide concentration of the colloid. Indeed, one or two iodide ions can be covalently bound to the colloid and thus give a di (DIT) or mono-iodinated (MIT) phenol group. The iodination of the phenol groups is carried out by two membrane enzymes of the follicular cells: the double oxidase (DUOX) synthesizes the hydrogen peroxide H2O2 necessary for thyroid peroxidase (TPO). &lt;br /&gt;
 &lt;br /&gt;
Due to the spatial conformation of &amp;lt;scene name=&#039;86/868183/Full_tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt;, there is a transfer of di or mono iodinated aromatic ring from a donor tyrosine to a close acceptor diiodotyrosine for the 14 tyrosines of the hormonogenic sites. Acceptor iodinated tyrosines are DITs because they are deprotonated due to their 6.5 acid pka facilitating the acceptance reaction leading to the formation of quinol-ether bonds, whereas donor iodinated tyrosines are MITs with a pKa of 8.5&amp;lt;ref&amp;gt;DOI 10.1530/eje.0.1380227&amp;lt;/ref&amp;gt;.&lt;br /&gt;
 &lt;br /&gt;
At the end of the coupling, the donor tyrosines are left with a dehydroalanine.&lt;br /&gt;
 &lt;br /&gt;
Once iodization and coupling have been performed, endocytosis of the colloid to the lysosome occurs. The &amp;lt;scene name=&#039;86/868183/Full_tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; is proteolyzed by cathepsin proteases&amp;lt;ref&amp;gt;DOI 1939080&amp;lt;/ref&amp;gt; and 7 TH are thus released from 14 mono- or di iodinated tyrosines.&lt;br /&gt;
 &lt;br /&gt;
The hormone synthesis function of TG is thus particularly linked to its structure. Moreover, research shows that denaturation or a simple modification of its conformation prevents the formation of TH &amp;lt;ref&amp;gt;PMID:4710237&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 456595&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
==== Control ====&lt;br /&gt;
The synthesis of TH from TG is stimulated by thyroid stimulating hormone (TSH) secreted by the pituitary gland, a gland of the brain. When the TSH receptor is activated, glycosylations leading to the mono iodination of tyrosines promote the synthesis of T3&amp;lt;ref&amp;gt;DOI  3182849&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;PMID: 1370485&amp;lt;/ref&amp;gt;.&lt;br /&gt;
On the other hand, if the amount of hormones is too high, a negative feedback is exerted on this process while a small amount of these hormones exerts a positive feedback.&lt;br /&gt;
&lt;br /&gt;
=== Iodine tank ===&lt;br /&gt;
The complex and particularly stable structure of &amp;lt;scene name=&#039;86/868183/Full_tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; gives it iodide reservoir properties. Indeed, all iodinated but non-hormonoid tyrosines are useful for iodine storage in the thyroid gland. &lt;br /&gt;
&lt;br /&gt;
== Interest in the medical field&amp;lt;ref&amp;gt;DOI 17614775&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 10.1677/ERC-10-0292&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 5773064&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 3681445&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 12089177&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 21134539&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 6814409&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 29984794&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 26595189&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
=== Modification of the TG quantity related to the desease ===&lt;br /&gt;
A healthy subject has between 5 and 25 µg of TG per liter of blood. In case of thyroid dysfunction, this level may increase or decrease. For example, it decreases in the case of congenital athyreosis (insufficiency of the thyroid gland) or prior to a miscarriage due to the presence of anti-TG antibodies, but increases in the case of cancer, thyroiditis, inflammation of the thyroid or autoimmune thyroid diseases AITD &amp;lt;ref&amp;gt;DOI 24147207&amp;lt;/ref&amp;gt;(Grave&#039;s disease, Hashimoto&#039;s thyroiditis).&amp;lt;ref&amp;gt;DOI 11788684&amp;lt;/ref&amp;gt;&lt;br /&gt;
 &lt;br /&gt;
In addition, a decrease in the size or capacity of the thyroid causes a decrease in the synthesis of TH by the &amp;lt;scene name=&#039;86/868183/Full_tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt;, and thus a drop in the blood level of T4 and T3, which in turn causes heart disease, brain disease and abnormalities in the development of the fetus. &amp;lt;ref&amp;gt;DOI 29246752&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 28593684&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 12721190&amp;lt;/ref&amp;gt;&lt;br /&gt;
 &lt;br /&gt;
The variation of the quantity of TG can thus be as much a cause as a consequence of disease.&amp;lt;ref&amp;gt;DOI 17201802&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Use of TG to treat deseases ===&lt;br /&gt;
A classic TSH-stimulated &amp;lt;scene name=&#039;86/868183/Full_tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; measurement or ultrasensitive &amp;lt;scene name=&#039;86/868183/Full_tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; measurement allows to control its rate in a more or less sensitive way and therefore to detect a disease like those mentioned above, to ensure the effectiveness of a treatment and the absence of recurrence and to avoid&lt;br /&gt;
miscarriages.&lt;br /&gt;
Since serum &amp;lt;scene name=&#039;86/868183/Full_tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; levels are correlated with the volume of thyroid tissue, we can also estimate the mass of thyroid tissue to detect hyperthyroidism, a disease related to an enlarged thyroid or, conversely, hypothyroidism.&lt;br /&gt;
 &lt;br /&gt;
For example, thyroidectomy and a iodine-131 therapy can be performed to cure thyroid cancer with an 80% chance. Following removal and iodine-131 therapy, thyroglobulin is this time produced by malignant thyrocytes. As a result, its blood level is indistinguishable from that of a healthy person. &amp;lt;ref&amp;gt;PMID: 762873&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 21649472&amp;lt;/ref&amp;gt;&lt;br /&gt;
But in case of recurrence and persistence of cancer, its level can increase again. Thyroglobulin therefore always serves as a tumor marker allowing us to estimate the risk of recurrence (&amp;gt;2ng/ml) or persistence (&amp;gt;1ng/ml) or remission.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
== References ==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Antoine Lambert</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_1650&amp;diff=3499875</id>
		<title>Sandbox Reserved 1650</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_1650&amp;diff=3499875"/>
		<updated>2022-01-08T16:57:23Z</updated>

		<summary type="html">&lt;p&gt;Antoine Lambert: Restructuration and development of references&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;{{Sandbox_Reserved_ESBS20_}}&amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
== Human thyroglobulin (TG) ==&lt;br /&gt;
&amp;lt;StructureSection load=&#039;6scj&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;Human thyroglobulin&#039; scene=&#039;&#039;&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Introduction&#039;&#039;&#039;&lt;br /&gt;
[https://en.wikipedia.org/wiki/Thyroglobulin Human thyroglobulin (TG)] is a precursor of two  [https://en.wikipedia.org/wiki/Thyroid_hormones thyroid hormones] (TH): tetraiodothyronine or [[thyroxine]] (T4) and [[triiodothyronine (T3)]], two thyroid hormones (TH). Its structure is essential for the diagnosis, treatment and monitoring of thyroid-related diseases.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== Composition and 3D structure &amp;lt;ref&amp;gt;DOI 32025030&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
=== Global structure === &lt;br /&gt;
Human thyroglobulin is a dimeric glycoprotein consisting of 2749 amino acid residues with a molecular weight of 600 kDa. The average size of the dimer is 120x235 Å. &lt;br /&gt;
 &lt;br /&gt;
Each of its monomers comprises 5 distinct regions on which approximately 66 &amp;lt;scene name=&#039;86/868183/Tyr/2&#039;&amp;gt;tyrosines&amp;lt;/scene&amp;gt; (chain A in blue, chain B in green, chain C in dark red, chain D in light red) are distributed. These are the regions : &lt;br /&gt;
&amp;lt;scene name=&#039;86/868183/Ntd/4&#039;&amp;gt;N-terminal domain&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=MuFHlCZCetU&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=5&amp;gt;NTD]], &amp;lt;scene name=&#039;86/868183/Core/3&#039;&amp;gt;Core&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=Lx1G1KGxKN8&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=8&amp;gt;CORE]], &amp;lt;scene name=&#039;86/868183/Flap/2&#039;&amp;gt;Flap&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=vk60Rdyo28A&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=6&amp;gt;FLAP]], &amp;lt;scene name=&#039;86/868183/Arm/2&#039;&amp;gt;Arm&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=XzeTjQKfO0E&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=9&amp;gt;ARM]] and &amp;lt;scene name=&#039;86/868183/Ctd/2&#039;&amp;gt;C-terminal domain&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=N-mg_xj-deI&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=7&amp;gt;CTD]].&lt;br /&gt;
 &lt;br /&gt;
In addition, &amp;lt;scene name=&#039;86/868183/Full_tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; has about 120 &amp;lt;scene name=&#039;86/868183/Cysteine/1&#039;&amp;gt;cysteine residues&amp;lt;/scene&amp;gt; allowing the formation of about 60 disulfide bridge bonds per monomer [[https://www.youtube.com/watch?v=Nuryu1aSqvY&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=11&amp;gt;Disulfide bridge]]. It is therefore a very stable and soluble protein.&lt;br /&gt;
&lt;br /&gt;
=== Structure of hormonogenic sites ===&lt;br /&gt;
Hormonogenic sites are responsible for the formation of one TH each. They are formed by 2 or even 3 tyrosines at less than 15 Å from each other, and exposed to the solvent. Of these tyrosines, 1 or 2 are acceptors and 1 is a donor. &lt;br /&gt;
 &lt;br /&gt;
There are 7 hormonogenic sites for &amp;lt;scene name=&#039;86/868183/Full_tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; :&lt;br /&gt;
&lt;br /&gt;
- two &amp;lt;scene name=&#039;86/868183/Site_a/1&#039;&amp;gt;A sites&amp;lt;/scene&amp;gt;, comprising two fixed donor tyrosines Y234 and Y149 and one flexible acceptor tyrosine: T24 [[https://www.youtube.com/watch?v=98MKFRc6S_w&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=4&amp;gt;Site A]]&lt;br /&gt;
&lt;br /&gt;
- two &amp;lt;scene name=&#039;86/868183/Site_b/3&#039;&amp;gt;B sites&amp;lt;/scene&amp;gt;, including one Y2573 donor and one Y2540 acceptor [[https://www.youtube.com/watch?v=aNd32NLk9Fk&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=3&amp;gt;Site B]]&lt;br /&gt;
&lt;br /&gt;
- a C site, comprising both donor and acceptor tyrosine Y2766&lt;br /&gt;
&lt;br /&gt;
- two &amp;lt;scene name=&#039;86/868183/Sites_d/1&#039;&amp;gt;D sites&amp;lt;/scene&amp;gt;, comprising a Y108 donor and a Y1310 acceptor [[https://www.youtube.com/watch?v=JYUPk59lVVw&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=2&amp;gt;Site D]]&lt;br /&gt;
 &lt;br /&gt;
An acidic Asp (aspartic acid) or Glu (glutamic acid) residue always precedes the acceptor and a lysine is always close to the donor.  &lt;br /&gt;
Except for site C, donors are at the fixed regions of the dimer while acceptors are at the flexible regions.&lt;br /&gt;
&lt;br /&gt;
== Synthesis &amp;lt;ref&amp;gt;PMID: 3681978&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 11581009&amp;lt;/ref&amp;gt; &amp;lt;ref&amp;gt;PMID: 3595599&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 11479128&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;PMID: 6895876&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 3016640&amp;lt;/ref&amp;gt; and acquisition of its structure ==&lt;br /&gt;
=== Role and composition of the thyroid gland ===&lt;br /&gt;
The thyroid gland is an endocrine organ located in the neck that secretes thyroid hormones into the bloodstream. Among them, T4 and T3 are involved in the growth, development and regulation of the metabolism of vertebrates.&lt;br /&gt;
&lt;br /&gt;
The thyroid gland is made up of thyroid vesicles, which are made up of thyroid follicular cells that are arranged around a lumen containing a viscous substance called colloid. The diet is a source of iodide I- ions which, once in the blood, are picked up by the thyroid cells and then partly discharged into the colloid.&lt;br /&gt;
&lt;br /&gt;
=== Expression of the TG gene===&lt;br /&gt;
Thyroid follicular cells synthesize human &amp;lt;scene name=&#039;86/868183/Full_tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; via the TG gene on chromosome 8.&lt;br /&gt;
&lt;br /&gt;
=== Post-translational modifications ===&lt;br /&gt;
TG also undergoes N-glycosylations in the ER at 17 &amp;lt;scene name=&#039;86/868183/Carbohydrated/1&#039;&amp;gt;glycosylation sites&amp;lt;/scene&amp;gt;, so that 10% of its molecular weight is carbohydrate. These modifications enhance its stability and solubility. Indeed, the two monomers are linked not by covalent interactions but via numerous interactions allowed by these N-glycosylations.&lt;br /&gt;
&lt;br /&gt;
=== Folding ===&lt;br /&gt;
Once synthesized, the acquisition of the 3D structure of the &amp;lt;scene name=&#039;86/868183/Full_tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=ZKZy3sVNYAo&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;gt;TG]] is enabled by the ER chaperone proteins of the thyroid follicular cells via a slow process &amp;lt;ref&amp;gt;DOI 10.1042/BJ20021257&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
== Functions ==&lt;br /&gt;
=== TH synthesis ===&lt;br /&gt;
==== Mechanism ====&lt;br /&gt;
Once their 3D structure is acquired, TGs are exported into the colloid by exocytosis thanks to their signal peptide which will be cleaved. This extracellular storage increases the amount of TG stored in the body. &lt;br /&gt;
 &lt;br /&gt;
In the colloid, about 30 tyrosines out of the 66 tyrosines, each consisting of a phenol group, are iodized. The quantity of iodinated tyrosine depends however on the iodide concentration of the colloid. Indeed, one or two iodide ions can be covalently bound to the colloid and thus give a di (DIT) or mono-iodinated (MIT) phenol group. The iodination of the phenol groups is carried out by two membrane enzymes of the follicular cells: the double oxidase (DUOX) synthesizes the hydrogen peroxide H2O2 necessary for thyroid peroxidase (TPO). &lt;br /&gt;
 &lt;br /&gt;
Due to the spatial conformation of &amp;lt;scene name=&#039;86/868183/Full_tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt;, there is a transfer of di or mono iodinated aromatic ring from a donor tyrosine to a close acceptor diiodotyrosine for the 14 tyrosines of the hormonogenic sites. Acceptor iodinated tyrosines are DITs because they are deprotonated due to their 6.5 acid pka facilitating the acceptance reaction leading to the formation of quinol-ether bonds, whereas donor iodinated tyrosines are MITs with a pKa of 8.5&amp;lt;ref&amp;gt;DOI 10.1530/eje.0.1380227&amp;lt;/ref&amp;gt;.&lt;br /&gt;
 &lt;br /&gt;
At the end of the coupling, the donor tyrosines are left with a dehydroalanine.&lt;br /&gt;
 &lt;br /&gt;
Once iodization and coupling have been performed, endocytosis of the colloid to the lysosome occurs. The &amp;lt;scene name=&#039;86/868183/Full_tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; is proteolyzed by cathepsin proteases&amp;lt;ref&amp;gt;DOI 1939080&amp;lt;/ref&amp;gt; and 7 TH are thus released from 14 mono- or di iodinated tyrosines.&lt;br /&gt;
 &lt;br /&gt;
The hormone synthesis function of TG is thus particularly linked to its structure. Moreover, research shows that denaturation or a simple modification of its conformation prevents the formation of TH &amp;lt;ref&amp;gt;PMID:4710237&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 456595&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
==== Control ====&lt;br /&gt;
The synthesis of TH from TG is stimulated by thyroid stimulating hormone (TSH) secreted by the pituitary gland, a gland of the brain. When the TSH receptor is activated, glycosylations leading to the mono iodination of tyrosines promote the synthesis of T3&amp;lt;ref&amp;gt;DOI  3182849&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;PMID: 1370485&amp;lt;/ref&amp;gt;.&lt;br /&gt;
On the other hand, if the amount of hormones is too high, a negative feedback is exerted on this process while a small amount of these hormones exerts a positive feedback.&lt;br /&gt;
&lt;br /&gt;
=== Iodine tank ===&lt;br /&gt;
The complex and particularly stable structure of &amp;lt;scene name=&#039;86/868183/Full_tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; gives it iodide reservoir properties. Indeed, all iodinated but non-hormonoid tyrosines are useful for iodine storage in the thyroid gland. &lt;br /&gt;
&lt;br /&gt;
== Interest in the medical field&amp;lt;ref&amp;gt;DOI 17614775&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 12721190&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 24147207&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 11788684&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 17201802&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 10.1677/ERC-10-0292&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 5773064&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 3681445&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 12089177&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 21134539&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 6814409&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 29984794&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 21649472&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 28593684&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 29246752&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;PMID: 762873&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 26595189&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
=== Modification of the TG quantity related to the desease ===&lt;br /&gt;
A healthy subject has between 5 and 25 µg of TG per liter of blood. In case of thyroid dysfunction, this level may increase or decrease. For example, it decreases in the case of congenital athyreosis (insufficiency of the thyroid gland) or prior to a miscarriage due to the presence of anti-TG antibodies, but increases in the case of cancer, thyroiditis, inflammation of the thyroid or autoimmune thyroid diseases AITD (Grave&#039;s disease, Hashimoto&#039;s thyroiditis).&lt;br /&gt;
 &lt;br /&gt;
In addition, a decrease in the size or capacity of the thyroid causes a decrease in the synthesis of TH by the &amp;lt;scene name=&#039;86/868183/Full_tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt;, and thus a drop in the blood level of T4 and T3, which in turn causes heart disease, brain disease and abnormalities in the development of the fetus. &lt;br /&gt;
 &lt;br /&gt;
The variation of the quantity of TG can thus be as much a cause as a consequence of disease.&lt;br /&gt;
&lt;br /&gt;
=== Use of TG to treat deseases ===&lt;br /&gt;
A classic TSH-stimulated &amp;lt;scene name=&#039;86/868183/Full_tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; measurement or ultrasensitive &amp;lt;scene name=&#039;86/868183/Full_tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; measurement allows to control its rate in a more or less sensitive way and therefore to detect a disease like those mentioned above, to ensure the effectiveness of a treatment and the absence of recurrence and to avoid&lt;br /&gt;
miscarriages.&lt;br /&gt;
Since serum &amp;lt;scene name=&#039;86/868183/Full_tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; levels are correlated with the volume of thyroid tissue, we can also estimate the mass of thyroid tissue to detect hyperthyroidism, a disease related to an enlarged thyroid or, conversely, hypothyroidism.&lt;br /&gt;
 &lt;br /&gt;
For example, thyroidectomy and a iodine-131 therapy can be performed to cure thyroid cancer with an 80% chance. Following removal and iodine-131 therapy, thyroglobulin is this time produced by malignant thyrocytes. As a result, its blood level is indistinguishable from that of a healthy person. &lt;br /&gt;
But in case of recurrence and persistence of cancer, its level can increase again. Thyroglobulin therefore always serves as a tumor marker allowing us to estimate the risk of recurrence (&amp;gt;2ng/ml) or persistence (&amp;gt;1ng/ml) or remission.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
== References ==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Antoine Lambert</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_1650&amp;diff=3499860</id>
		<title>Sandbox Reserved 1650</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_1650&amp;diff=3499860"/>
		<updated>2022-01-08T08:51:01Z</updated>

		<summary type="html">&lt;p&gt;Antoine Lambert: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;{{Sandbox_Reserved_ESBS20_}}&amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
== Human thyroglobulin (TG) ==&lt;br /&gt;
&amp;lt;StructureSection load=&#039;6scj&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;Human thyroglobulin&#039; scene=&#039;&#039;&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Introduction&#039;&#039;&#039;&lt;br /&gt;
[https://en.wikipedia.org/wiki/Thyroglobulin Human thyroglobulin (TG)] is a precursor of two  [https://en.wikipedia.org/wiki/Thyroid_hormones thyroid hormones] (TH): tetraiodothyronine or [[thyroxine]] (T4) and [[triiodothyronine (T3)]], two thyroid hormones (TH). Its structure is essential for the diagnosis, treatment and monitoring of thyroid-related diseases.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== Synthesis &amp;lt;ref&amp;gt;PMID: 3681978&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 11581009&amp;lt;/ref&amp;gt; &amp;lt;ref&amp;gt;PMID: 3595599&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 11479128&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;PMID: 6895876&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 3016640&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
=== Role and composition of the thyroid gland ===&lt;br /&gt;
The thyroid gland is an endocrine organ located in the neck that secretes thyroid hormones into the bloodstream. Among them, T4 and T3 are involved in the growth, development and regulation of the metabolism of vertebrates.&lt;br /&gt;
&lt;br /&gt;
The thyroid gland is made up of thyroid vesicles, which are made up of thyroid follicular cells that are arranged around a lumen containing a viscous substance called colloid. The diet is a source of iodide I- ions which, once in the blood, are picked up by the thyroid cells and then partly discharged into the colloid.&lt;br /&gt;
&lt;br /&gt;
=== Expression of the TG gene===&lt;br /&gt;
Thyroid follicular cells synthesize human &amp;lt;scene name=&#039;86/868183/Full_tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; via the TG gene on chromosome 8.&lt;br /&gt;
&lt;br /&gt;
== Composition and 3D structure &amp;lt;ref&amp;gt;DOI 32025030&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
=== Global structure and its acquisition ===&lt;br /&gt;
Once synthesized, the acquisition of the 3D structure of the &amp;lt;scene name=&#039;86/868183/Full_tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=ZKZy3sVNYAo&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;gt;TG]] is enabled by the ER chaperone proteins of the thyroid follicular cells via a slow process &amp;lt;ref&amp;gt;DOI 10.1042/BJ20021257&amp;lt;/ref&amp;gt;.&lt;br /&gt;
 &lt;br /&gt;
The result is a dimeric glycoprotein consisting of 2749 amino acid residues with a molecular weight of 600 kDa. The average size of the dimer is 120x235 Å. &lt;br /&gt;
 &lt;br /&gt;
Each of its monomers comprises 5 distinct regions on which approximately 66 &amp;lt;scene name=&#039;86/868183/Tyr/2&#039;&amp;gt;tyrosines&amp;lt;/scene&amp;gt; (chain A in blue, chain B in green, chain C in dark red, chain D in light red) are distributed. These are the regions : &lt;br /&gt;
&amp;lt;scene name=&#039;86/868183/Ntd/4&#039;&amp;gt;N-terminal domain&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=MuFHlCZCetU&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=5&amp;gt;NTD]], &amp;lt;scene name=&#039;86/868183/Core/3&#039;&amp;gt;Core&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=Lx1G1KGxKN8&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=8&amp;gt;CORE]], &amp;lt;scene name=&#039;86/868183/Flap/2&#039;&amp;gt;Flap&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=vk60Rdyo28A&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=6&amp;gt;FLAP]], &amp;lt;scene name=&#039;86/868183/Arm/2&#039;&amp;gt;Arm&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=XzeTjQKfO0E&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=9&amp;gt;ARM]] and &amp;lt;scene name=&#039;86/868183/Ctd/2&#039;&amp;gt;C-terminal domain&amp;lt;/scene&amp;gt; [[https://www.youtube.com/watch?v=N-mg_xj-deI&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=7&amp;gt;CTD]].&lt;br /&gt;
 &lt;br /&gt;
In addition, &amp;lt;scene name=&#039;86/868183/Full_tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; has about 120 &amp;lt;scene name=&#039;86/868183/Cysteine/1&#039;&amp;gt;cysteine residues&amp;lt;/scene&amp;gt; allowing the formation of about 60 disulfide bridge bonds per monomer [[https://www.youtube.com/watch?v=Nuryu1aSqvY&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=11&amp;gt;Disulfide bridge]]. It is therefore a very stable and soluble protein.&lt;br /&gt;
&lt;br /&gt;
=== Post-translational modifications ===&lt;br /&gt;
TG also undergoes N-glycosylations in the ER at 17 &amp;lt;scene name=&#039;86/868183/Carbohydrated/1&#039;&amp;gt;glycosylation sites&amp;lt;/scene&amp;gt;, so that 10% of its molecular weight is carbohydrate. These modifications enhance its stability and solubility. Indeed, the two monomers are linked not by covalent interactions but via numerous interactions allowed by these N-glycosylations.&lt;br /&gt;
&lt;br /&gt;
=== Structure of hormonogenic sites ===&lt;br /&gt;
Hormonogenic sites are responsible for the formation of one TH each. They are formed by 2 or even 3 tyrosines at less than 15 Å from each other, and exposed to the solvent. Of these tyrosines, 1 or 2 are acceptors and 1 is a donor. &lt;br /&gt;
 &lt;br /&gt;
There are 7 hormonogenic sites for &amp;lt;scene name=&#039;86/868183/Full_tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; :&lt;br /&gt;
&lt;br /&gt;
- two &amp;lt;scene name=&#039;86/868183/Site_a/1&#039;&amp;gt;A sites&amp;lt;/scene&amp;gt;, comprising two fixed donor tyrosines Y234 and Y149 and one flexible acceptor tyrosine: T24 [[https://www.youtube.com/watch?v=98MKFRc6S_w&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=4&amp;gt;SIte A]]&lt;br /&gt;
&lt;br /&gt;
- two &amp;lt;scene name=&#039;86/868183/Site_b/3&#039;&amp;gt;B sites&amp;lt;/scene&amp;gt;, including one Y2573 donor and one Y2540 acceptor [[https://www.youtube.com/watch?v=aNd32NLk9Fk&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=3&amp;gt;Site B]]&lt;br /&gt;
&lt;br /&gt;
- a C site, comprising both donor and acceptor tyrosine Y2766&lt;br /&gt;
&lt;br /&gt;
- two &amp;lt;scene name=&#039;86/868183/Sites_d/1&#039;&amp;gt;D sites&amp;lt;/scene&amp;gt;, comprising a Y108 donor and a Y1310 acceptor [[https://www.youtube.com/watch?v=JYUPk59lVVw&amp;amp;list=PLMGnv0h7EIJydYifu7JSxrkXMzpwlkyDF&amp;amp;index=2&amp;gt;Site D]]&lt;br /&gt;
 &lt;br /&gt;
An acidic Asp (aspartic acid) or Glu (glutamic acid) residue always precedes the acceptor and a lysine is always close to the donor.  &lt;br /&gt;
Except for site C, donors are at the fixed regions of the dimer while acceptors are at the flexible regions.&lt;br /&gt;
&lt;br /&gt;
== Functions ==&lt;br /&gt;
=== TH synthesis ===&lt;br /&gt;
==== Mechanism ====&lt;br /&gt;
Once their 3D structure is acquired, TGs are exported into the colloid by exocytosis thanks to their signal peptide which will be cleaved. This extracellular storage increases the amount of TG stored in the body. &lt;br /&gt;
 &lt;br /&gt;
In the colloid, about 30 tyrosines out of the 66 tyrosines, each consisting of a phenol group, are iodized. The quantity of iodinated tyrosine depends however on the iodide concentration of the colloid. Indeed, one or two iodide ions can be covalently bound to the colloid and thus give a di (DIT) or mono-iodinated (MIT) phenol group. The iodination of the phenol groups is carried out by two membrane enzymes of the follicular cells: the double oxidase (DUOX) synthesizes the hydrogen peroxide H2O2 necessary for thyroid peroxidase (TPO). &lt;br /&gt;
 &lt;br /&gt;
Due to the spatial conformation of &amp;lt;scene name=&#039;86/868183/Full_tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt;, there is a transfer of di or mono iodinated aromatic ring from a donor tyrosine to a close acceptor diiodotyrosine for the 14 tyrosines of the hormonogenic sites. Acceptor iodinated tyrosines are DITs because they are deprotonated due to their 6.5 acid pka facilitating the acceptance reaction leading to the formation of quinol-ether bonds, whereas donor iodinated tyrosines are MITs with a pKa of 8.5&amp;lt;ref&amp;gt;DOI 10.1530/eje.0.1380227&amp;lt;/ref&amp;gt;.&lt;br /&gt;
 &lt;br /&gt;
At the end of the coupling, the donor tyrosines are left with a dehydroalanine.&lt;br /&gt;
 &lt;br /&gt;
Once iodization and coupling have been performed, endocytosis of the colloid to the lysosome occurs. The &amp;lt;scene name=&#039;86/868183/Full_tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; is proteolyzed by cathepsin proteases&amp;lt;ref&amp;gt;DOI 1939080&amp;lt;/ref&amp;gt; and 7 TH are thus released from 14 mono- or di iodinated tyrosines.&lt;br /&gt;
 &lt;br /&gt;
The hormone synthesis function of TG is thus particularly linked to its structure. Moreover, research shows that denaturation or a simple modification of its conformation prevents the formation of TH &amp;lt;ref&amp;gt;PMID:4710237&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 456595&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
==== Control ====&lt;br /&gt;
The synthesis of TH from TG is stimulated by thyroid stimulating hormone (TSH) secreted by the pituitary gland, a gland of the brain. When the TSH receptor is activated, glycosylations leading to the mono iodination of tyrosines promote the synthesis of T3&amp;lt;ref&amp;gt;DOI  3182849&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;PMID: 1370485&amp;lt;/ref&amp;gt;.&lt;br /&gt;
On the other hand, if the amount of hormones is too high, a negative feedback is exerted on this process while a small amount of these hormones exerts a positive feedback.&lt;br /&gt;
&lt;br /&gt;
=== Iodine tank ===&lt;br /&gt;
The complex and particularly stable structure of &amp;lt;scene name=&#039;86/868183/Full_tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; gives it iodide reservoir properties. Indeed, all iodinated but non-hormonoid tyrosines are useful for iodine storage in the thyroid gland. &lt;br /&gt;
&lt;br /&gt;
== Interest in the medical field&amp;lt;ref&amp;gt;DOI 17614775&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 12721190&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 24147207&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 11788684&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 17201802&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 10.1677/ERC-10-0292&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 5773064&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 3681445&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 12089177&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 21134539&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 6814409&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 29984794&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 21649472&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 28593684&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 29246752&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;PMID: 762873&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI 26595189&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
=== Modification of the TG quantity related to the desease ===&lt;br /&gt;
A healthy subject has between 5 and 25 µg of TG per liter of blood. In case of thyroid dysfunction, this level may increase or decrease. For example, it decreases in the case of congenital athyreosis (insufficiency of the thyroid gland) or prior to a miscarriage due to the presence of anti-TG antibodies, but increases in the case of cancer, thyroiditis, inflammation of the thyroid or autoimmune thyroid diseases AITD (Grave&#039;s disease, Hashimoto&#039;s thyroiditis).&lt;br /&gt;
 &lt;br /&gt;
In addition, a decrease in the size or capacity of the thyroid causes a decrease in the synthesis of TH by the &amp;lt;scene name=&#039;86/868183/Full_tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt;, and thus a drop in the blood level of T4 and T3, which in turn causes heart disease, brain disease and abnormalities in the development of the fetus. &lt;br /&gt;
 &lt;br /&gt;
The variation of the quantity of TG can thus be as much a cause as a consequence of disease.&lt;br /&gt;
&lt;br /&gt;
=== Use of TG to treat deseases ===&lt;br /&gt;
A classic TSH-stimulated &amp;lt;scene name=&#039;86/868183/Full_tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; measurement or ultrasensitive &amp;lt;scene name=&#039;86/868183/Full_tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; measurement allows to control its rate in a more or less sensitive way and therefore to detect a disease like those mentioned above, to ensure the effectiveness of a treatment and the absence of recurrence and to avoid&lt;br /&gt;
miscarriages.&lt;br /&gt;
Since serum &amp;lt;scene name=&#039;86/868183/Full_tg/2&#039;&amp;gt;TG&amp;lt;/scene&amp;gt; levels are correlated with the volume of thyroid tissue, we can also estimate the mass of thyroid tissue to detect hyperthyroidism, a disease related to an enlarged thyroid or, conversely, hypothyroidism.&lt;br /&gt;
 &lt;br /&gt;
For example, thyroidectomy and a iodine-131 therapy can be performed to cure thyroid cancer with an 80% chance. Following removal and iodine-131 therapy, thyroglobulin is this time produced by malignant thyrocytes. As a result, its blood level is indistinguishable from that of a healthy person. &lt;br /&gt;
But in case of recurrence and persistence of cancer, its level can increase again. Thyroglobulin therefore always serves as a tumor marker allowing us to estimate the risk of recurrence (&amp;gt;2ng/ml) or persistence (&amp;gt;1ng/ml) or remission.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
== References ==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Antoine Lambert</name></author>
	</entry>
</feed>