https://proteopedia.org/api.php?action=feedcontributions&feedformat=atom&user=Bhaskar+Ganguly 2026-10-11T07:49:53Z User contributions MediaWiki 1.43.8 https://proteopedia.org/index.php?title=User:Bhaskar_Ganguly/MyBo_HyPo&diff=2586948 2016-04-13T11:55:13Z

<p>Bhaskar Ganguly: </p> <hr /> <div>'''The ''MyBo'' HyPo Project'''<br /> ----<br /> <br /> Welcome to the ''Mycobacterium bovis''' Hypothetical Protein (''MyBo'' HyPo) Project.<br /> <br /> The MyBo HyPo Project aims towards a computational characterization of all hypothetical proteins of ''M. bovis''. A Hypothetical Protein (HP) is one that is known to exist only on the basis of a corresponding gene but without any function assigned to it. Characterization of HPs of a pathogen has a potential for unraveling hitherto unknown drug and vaccine targets. ''M. bovis'' is an important veterinary pathogen of zoonotic significance, responsible for causing nearly 3% of all human cases of tuberculosis in the developing world.<br /> <br /> As for now, computationally-derived models of 14 ''M. bovis'' HP UniRefs, obtained at a 90% sequence identity cut-off from all HPs of ''M. bovis'' in the UniProt Database, are being included. These models shall be updated as and when models of better quality become available. We also plan to add models of ''M. bovis'' HP sequences from other databases over the coming periods of time.<br /> - ''Bhaskar Ganguly'', Ph.D.; ''Sunil Kr. Rastogi'', Ph.D.<br /> <br /> <br /> ('''Note''': It may take a while for the models to load completely. Your web browser must be configured to run Java for visualization of the interactive protein models. Right click on a model to download it and for access to more options. Left click and drag a model to rotate view.)<br /> <br /> <br /> == ''M. bovis'' HP A0A083W064 ==<br /> <br /> &lt;Structure load='A0A083W064.pdb' size='300' frame='true' align='right' caption='''M. bovis'' HP A0A083W064' scene='72/728008/A0a083w064/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Hypothetical arginine and alanine rich protein<br /> <br /> ==== Sequence ====<br /> MARQPLEQRVARAAQAALARQRFVSAIDVLLGLGWLAPSHVDQWRQGRVDSLEQVVQANL<br /> <br /> SKITAVMAALRRWARDRGLNPSETDYVARTRDRRRLRFSVTGEDAIERAYRTHWVSPELS<br /> <br /> ERAVARQSRRPDLVVIMPVNDWSCASCGGSGDLMFLEDAGPLCLDCADLGHLVFLPSGDA<br /> <br /> ALTRRAKRASRLSAVVVRWSRARKRYERQGILVEAEALERAENECLADAEVRARRRERDE<br /> <br /> ARRANEDLRLQAEFGAAIRTLFPNCPAGRAEAIARHAATRGSGRIGRSAAGRALDPEAVR<br /> <br /> LAVAASVRHIDTSFDELLMSGVDRETARHRVGEHVEEVLRDWRATSR<br /> <br /> ==== Length ====<br /> 347<br /> <br /> ==== Predicted Localization ====<br /> Cytoplasmic<br /> <br /> ==== Putative Function ====<br /> Arginine decarboxylase<br /> <br /> ----<br /> <br /> == ''M. bovis'' HP A0A083W0M1 ==<br /> <br /> &lt;Structure load='A0A083W0M1.pdb' size='300' frame='true' align='right' caption='''M. bovis'' HP A0A083W0M1' scene='72/728008/A0a083w0m1/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Conserved hypothetical alanine rich protein<br /> <br /> ==== Sequence ====<br /> MSTFRECRSMFDAAVKSYQSGDLANARAAFGRLTVENPDMSDGWLGLLACGDHHLDTLAG<br /> <br /> AHQHSEALYSETRRVGLTDGELSAVVMAPMYLGLRVWSRATIGLAYASALIIADRHDEAA<br /> <br /> ATLDDPVITEDTGAAQYRQFVMATLFHKTRSWSNLLKVTEISPPSGATDVRDEVADAVAA<br /> <br /> LASTAAASLGQFQFALELAEQVSTTNPRVTADVTLTRAWCLRELGDDDAARVALSATTTG<br /> <br /> DAPRTNTTAEQAGSPQPKFRHPYDDGRDLLVARRRPPAGDGWRKAVTKMTFGRVNPEPSA<br /> <br /> KREQTDELIQRICAPLADVHKLAFVSAKGGVGKTTMTVLVGNAVARLRGDRVMAVDVDAD<br /> <br /> LGDLSARFSERGGPQTNIEHFVSSQHTKRYADVRVHTVMNKDRLEMLGAQNDPRSTYKFG<br /> <br /> PEDYGAAMQILETHCNVILLDCGTPVNGPLFSNILNDVTGLVVVASEDVRGVEGALVTLD<br /> <br /> WLGAHGFGRLLQHTVVVLNAIQKTRSLVDCGAAENQFRKRVPDFFRIPYDPHLATGLAVD<br /> <br /> FSSLKRRTRNAVLDLAGGLAQHYPASRVRPRGEDSWKTWIETMRQVG<br /> <br /> ==== Length ====<br /> 587<br /> <br /> ==== Predicted Localization ====<br /> Cytoplasmic<br /> <br /> ==== Putative Function ====<br /> Cell Division Inhibitor MIND<br /> <br /> ----<br /> <br /> == ''M. bovis'' HP A0A0C7DGT6 ==<br /> <br /> &lt;Structure load='A0A0C7DGT6.pdb' size='300' frame='true' align='right' caption='''M. bovis'' HP A0A0C7DGT6' scene='72/728008/A0a0c7dgt6/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Conserved hypothetical alanine and proline rich protein<br /> <br /> ==== Sequence ====<br /> MADRLNVAERLAEGRPAAEHTQSYVRACHLVGYQHPDLTAYPAQIHDWYGSEDGLDLHAL<br /> <br /> DADCAQLRAAASVLMEALRMERSQVAVLAAAWTGSGADAAVHFVQRHCETGNSVVTEVRA<br /> <br /> AAQRCESLRDNLWQLVDSKVATAIAIDERALAQRPAWLAAAEALTTEGADRPTAVEVVRQ<br /> <br /> QIQPYVDDDVRNDWLTTMRSTTAGVAASYDAVTDQLASAPRAHFEIPDDLGPGRQPSPAS<br /> <br /> VPAQPSATAAITPAAALPPPDPVPAVTSRPVTPSDFGSAPGDGSATPAGVGSAGGFGDAG<br /> <br /> GTGGLGGFAGLAGLANRIVDAVDSLLGSVAEQLGDPLAADNPPGAVDPFAEDAADNADDG<br /> <br /> DDAHPEEAGEAAEPKEATEPDEADEVDDADESVPAERAQDVAEEATLPPVAEPPPPAAPP<br /> <br /> VAEPPPPVAAPAPPGAPEPANGPSPEALSEGATPCEIAADELPQAGP<br /> <br /> ==== Length ====<br /> 467<br /> <br /> ==== Predicted Localization ====<br /> Cytoplasmic<br /> <br /> ==== Putative Function ====<br /> Undetermined<br /> <br /> ----<br /> <br /> == ''M. bovis'' HP A0A083VPW0 ==<br /> <br /> &lt;Structure load='A0A083VPW0.pdb' size='300' frame='true' align='right' caption='''M. bovis'' HP A0A083VPW0' scene='72/728008/A0a083vpw0/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Conserved hypothetical alanine rich protein<br /> <br /> ==== Sequence ====<br /> MVAADLPPGRWSAVLVGAWWPAPSAALRAAAQHWATWAMQKQELARNLISQHDLLLRNQG<br /> <br /> RTAEDLIGRYLRGAKSEVTKAEKYEIKKGAFNTAADAIDYLRSRLTGIAGEGNKEIDDVL<br /> <br /> ASKKPLPEQLAEIQAIQTRCNADAANASRDAVDKVMTAMQEILEAEDIGDDPRTWARANG<br /> <br /> FNVDDAPPPRLIRENDLAALTGPGARGGSFGSVEGAGDLASPQSVGAGGFSGSGVQAACS<br /> <br /> QPAPRAIGASSRHASAGPVPPAPVVTTPAAATPPVIATGPRWRCPAGRCRRRPSDRAYRL<br /> <br /> RRLGNRLRPGW<br /> <br /> ==== Length ====<br /> 311<br /> <br /> ==== Predicted Localization ====<br /> Outer Membrane<br /> <br /> ==== Putative Function ====<br /> Rhamnosidase<br /> <br /> ----<br /> <br /> == ''M. bovis'' HP A0A083VTH6 ==<br /> <br /> &lt;Structure load='A0A083VTH6.pdb' size='300' frame='true' align='right' caption='''M. bovis'' HP A0A083VTH6' scene='72/728008/A0a083vth6/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Hypothetical alanine and valine rich protein<br /> <br /> ==== Sequence ====<br /> MSPHRAVIEAGPGAIRRLCCGADVVADTAVSAAALAAIDDQVALLDERPVAVDSLWFDAL<br /> <br /> RSVAVDHRDGPVVVHPSWWSAARVEVVTAAARTLTRDVVVHPRSWLLRQASSGVSAATVV<br /> <br /> VEIAERLVLVAGAEVAAVARRTDAESVAGQVGSVIARMTRGITAVVLIDVPSTVAGAAAL<br /> <br /> AAAIAGAVRGTGSSVVEIDGVRLARLARAALPPSDEPADPAARPATRSRVPTLARVAAAG<br /> <br /> VALALLAPAAVVRHGATTLQRPPTTLLVEGRVALTIPADWSTQRVVSGPGSARVQVTSPA<br /> <br /> DPEVALHVTQSPVPGETLPGTAQRLKRAIDASPAGVFVDFNPSDIRAGRPAVTYREVRAG<br /> <br /> HQVRWTILLDGAVRISVGCQSGPGHEDLLREVCAQAVRSVHAVG<br /> <br /> ==== Length ====<br /> 404<br /> <br /> ==== Predicted Localization ====<br /> Outer Membrane<br /> <br /> ==== Putative Function ====<br /> Photosystem II protein PsbP<br /> <br /> ----<br /> <br /> == ''M. bovis'' HP A0A083VUK1 ==<br /> <br /> &lt;Structure load='A0A083VUK1.pdb' size='300' frame='true' align='right' caption='''M. bovis'' HP A0A083VUK1' scene='72/728008/A0a083vuk1/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Hypothetical proline rich protein<br /> <br /> ==== Sequence ====<br /> MFTGIASHAGALGAALVVLIGAAILHDGPAAADPNQDDRFLALLEKKEIPAVANVPRVID<br /> <br /> AAHKVCRKLDGGMPVNDIVDGLRNDAYNIDPVMRLYPVRLTTTMTRFISAAVEIYCPNHH<br /> <br /> SKMAFAMANFEPGSNEPTHRVAASTRSAVNSGSDLRASVSDMTIMSPGWREPTGAMLASV<br /> <br /> LGAVRAGDPLIPNPPPIPVPPPAAQTLIPPPPIVAPPPPRPAPPQQPPPPPPEVEPPAGV<br /> <br /> PQSGGAAGSGGAGSGGGGGGDGPVEPSPARPMPPGFIRLAP<br /> <br /> ==== Length ====<br /> 281<br /> <br /> ==== Predicted Localization ====<br /> Outer Membrane<br /> <br /> ==== Putative Function ====<br /> Transcriptional activator<br /> <br /> ----<br /> <br /> == ''M. bovis'' HP A0A083W378 ==<br /> <br /> &lt;Structure load='A0A083W378.pdb' size='300' frame='true' align='right' caption='''M. bovis'' HP A0A083W378' scene='72/728008/A0a083w378/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Conserved hypothetical proline rich protein<br /> <br /> ==== Sequence ====<br /> MATGARPALGLSIGVTNLAAVAADHSITRKPVLTLYRQRPPEVGVPSENPRLDEPGLVIT<br /> <br /> DFVDRVGDSVGIVAADGSVYRSEALVADALLALAYTATGGRALPGSVTVTYPAHWGPAAV<br /> <br /> AALDSALRRASEWSHGTSSTAQPLSLLPDAAAALYAIRADPGIPARGIVAVCDFGGSGTG<br /> <br /> ITLVDAADEYRPVAATVRHQAFSGDLIDQSLLSYVMSELPGTGAFDPAGTSAIGSLTKLR<br /> <br /> IECRKAKERLSSSTVTTLTDALGGDIRLTRNELEDTIRDSLDSVGRALEQTLARSGIRTA<br /> <br /> ELVAIVSVGGGANIPAVTTTLSGRFCVPVVRTPRPQLTAAFGGALWAARRPGDTSATVLT<br /> <br /> AVTSATATAPADAPASVLQPALAWSEADEDSHIGPAPGYTAARPSLSFDHDAHAEPEPKS<br /> <br /> PPIPWYRLPAVIITGTTVAVLLVGAAVAIGLSTGDQPTAPGTPQRPGVTTTAAPPPSPAP<br /> <br /> ASDGPTTEPAPPVQAPATGGPAPPLQQPLPPPPTTTNTQPAVTTDVITPAPTTPASAPPA<br /> <br /> TTQPPATTQPPATTSPSPPPIPPIPPIPEIPQLPPGIPQVPGIGQFSAISGS<br /> <br /> ==== Length ====<br /> 592<br /> <br /> ==== Predicted Localization ====<br /> Outer Membrane<br /> <br /> ==== Putative Function ====<br /> Chaperone (DnaK-like)<br /> <br /> ----<br /> <br /> == ''M. bovis'' HP A0A083WED4 ==<br /> <br /> &lt;Structure load='A0A083WED4.pdb' size='300' frame='true' align='right' caption='''M. bovis'' HP A0A083WED4' scene='72/728008/A0a083wed4/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Alanine and proline rich protein<br /> <br /> ==== Sequence ====<br /> MPTIWTFVRAAAVLVGSSAALLTGGIAHADPAPAPAPAPNIPQQLISSAANAPQILQNLA<br /> <br /> TALGATPPLSAPKVAEPAPAAPGITATFPGLTPAAPAAAAAPALTPSIPGVNAPIPGITP<br /> <br /> AAPALPVTAPAAAPTIPGVNAPIPGITAPAPAAAAVPASVPGVPSAKVDLPQLPYLPLQV<br /> <br /> PQQLSLPADLPALASGVIPAAPIAPTPPAPGAPALPPGPPSLLAALP<br /> <br /> ==== Length ====<br /> 227<br /> <br /> ==== Predicted Localization ====<br /> Outer Membrane<br /> <br /> ==== Putative Function ====<br /> snRNP assembly (human gemin 1-like)<br /> <br /> ----<br /> <br /> == ''M. bovis'' HP A0A093N4V5 ==<br /> <br /> &lt;Structure load='A0A093N4V5.pdb' size='300' frame='true' align='right' caption='''M. bovis'' HP A0A093N4V5' scene='72/728008/A0a093n4v5/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Hypothetical glycine rich protein<br /> <br /> ==== Sequence ====<br /> MAFVDLRYPWCRGDGWISPPVVAVALGWAMRRKPFSRFNEYVGSASNTCWFARALELRTL<br /> <br /> LIR<br /> <br /> ==== Length ====<br /> 63<br /> <br /> ==== Predicted Localization ====<br /> Outer Membrane<br /> <br /> ==== Putative Function ====<br /> Transcriptional repressor (KorB-like)<br /> <br /> ----<br /> <br /> == ''M. bovis'' HP A0A0C7DM56 ==<br /> <br /> &lt;Structure load='A0A0C7DM56.pdb' size='300' frame='true' align='right' caption='''M. bovis'' HP A0A0C7DM56' scene='72/728008/A0a0c7dm56/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Alanine and arginine and proline rich protein<br /> <br /> ==== Sequence ====<br /> MMASNQTAAQHSSATLQQAPRSIDDAGGCPLTISPIANSPGDTFAVTPVVEYEPPPRNIP<br /> <br /> PCGQSSHAARRPHTPQLARRQPIRPSGRAPAAVTSTAKSPRLRQAGTFADAALRRVLEVI<br /> <br /> DRRRPVGQLRPLLAPGLVDSVLAVSRTAAGHQQGAAMLRRIRLTPAGPDTADTAAEVFGT<br /> <br /> YSRGDRIHAIACRVEQRPAGNETRWLMVALHIG<br /> <br /> ==== Length ====<br /> 213<br /> <br /> ==== Predicted Localization ====<br /> Outer Membrane<br /> <br /> ==== Putative Function ====<br /> Palmitoyl CoA hydrolase<br /> <br /> ----<br /> <br /> == ''M. bovis'' HP A0A0C7DHL0 ==<br /> <br /> &lt;Structure load='A0A0C7DHL0.pdb' size='300' frame='true' align='right' caption='''M. bovis'' HP A0A0C7DHL0' scene='72/728008/A0a0c7dhl0/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Conserved hypothetical alanine rich protein<br /> <br /> ==== Sequence ====<br /> MAEPLAVDPTGLSAAAAKLAGLVFPQPPAPIAVSGTDSVVAAINKTMPSIESLVSDGLPG<br /> <br /> VKAALTRTASNMNAAADVYAKTDQSLGTSLSQYAFGSSGEGLAGVASVGGQPSQATQLLS<br /> <br /> TPVSQVTTQLGETAAELAPRVVATVPQLVQLAPHAVQMSQNASPIAQTISQTAQQAAQSA<br /> <br /> QGGSGPMPAQLASAEKPATEQAEPVHEVTNDDQGDQGDVQPAEVVAAARDEGAGASPGQQ<br /> <br /> PGGGVPAQAMDTGAGARPAASPLAAPVDPSTPAPSTTTTL<br /> <br /> ==== Length ====<br /> 280<br /> <br /> ==== Predicted Localization ====<br /> Secreted<br /> <br /> ==== Putative Function ====<br /> ESX-1 secretion-associated protein EspB<br /> <br /> ----<br /> <br /> == ''M. bovis'' HP A0A083VPS0 ==<br /> <br /> &lt;Structure load='A0A083VPS0.pdb' size='300' frame='true' align='right' caption='''M. bovis'' HP A0A083VPS0' scene='72/728006/Mybo_hp_a0a083vps0/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Alanine and proline rich protein<br /> <br /> ==== Sequence ====<br /> MAPLAVDPAALDSAGGAVVAAGAGLGAVISSLTAALAGCAGMAGDDPAGAVFGRSYDGSA<br /> <br /> AALVQAMSVARNGLCNLGDGVRMSAHNYSLAEAMSDVAGRAAPLPAPPPSGCVGVGAPPS<br /> <br /> AVGGGGGAPKGWGWVAPYIGMIWPNGDSTKLRAAAVAWRSAGTQFALTEIQSTAGPMGVI<br /> <br /> RAQQLPEAGLIESAFADAYASTTAVVGQCHQLAAQLDAYAARIDAVHAAVLDLLARICDP<br /> <br /> LTGIKEVWEFLTDQDEDEIQRIAHDIAVVVDQFSGEVDALAAEITAVVSHAEAVITAMAD<br /> <br /> HAGKQWDRFLHSNPVGVVIDGTGQQLKGFGEEAFGMAKDSWDLGPLRASIDPFGWYRSWE<br /> <br /> EMLTGMAPLAGLGGENAPGVVESWKQFGKSLIHWDEWTTNPNEALGKTVFDAATLALPGG<br /> <br /> PLSKLGSKGRDILAGVRGLKERLEPTTPHLEPPATPPRPGPQPPRIEPPESGHPAPAPAA<br /> <br /> KPAPVPANGPLPHSPTESKPPPVDRPAEPVAPSSASAGQPRVSAATTPGTHVPHGLPQPG<br /> <br /> EHVPAQAPPATTLLGGPPVESAPATAHQPQWATTPAAPAAAPHSTPGGVHSTESGPHGRS<br /> <br /> LSAHGSEPTHDGASHGSGHGSGSEPPGLHAPHREQQLAMHSNEPAGEGWHRLSDEAVDPQ<br /> <br /> YGEPLSRHWDFTDNPADRSRINPVVAQLMEDPNAPFGRDPQGQPYTQERYQERFNSVGPW<br /> <br /> GQQYSNFPPNNGAVPGTRIAYTNLEKFLSDYGPQLDRIGGDQGKYLAIMEHGRPASWEQR<br /> <br /> ALHVTSLRDPYHAYTIDWLPEGWFIEVSEVAPGCGQPGGSIQVRIFDHQNEMRKVEELIR<br /> <br /> RGVLRQ<br /> <br /> ==== Length ====<br /> 846<br /> <br /> ==== Predicted Localization ====<br /> Secreted<br /> <br /> ==== Putative Function ====<br /> Tuberculosis necrotizing toxin<br /> <br /> ----<br /> <br /> == ''M. bovis'' HP A0A083VYR3 ==<br /> <br /> &lt;Structure load='A0A083VYR3.pdb' size='300' frame='true' align='right' caption='''M. bovis'' HP A0A083VYR3' scene='72/728008/A0a083vyr3/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Conserved hypothetical alanine rich protein<br /> <br /> ==== Sequence ====<br /> MAVDLDGVTTVLLPGTGSDNDYVRRAFSAPLRRAGAVLVTPVPHPGRLIDGYRAALDDAA<br /> <br /> RDGPVVVGGVSLGAAVAAAWALEHPDRAVAVLAALPAWTGEPELAPAAQAARYTAARLRC<br /> <br /> DGLAATTTRMRASSPVWLAEELTRSWRVQWPELPDAMEEAAAYVAPSRAELARLVAPLAV<br /> <br /> AAAVDDPIHPLQVAADWVSVAPHAALRTVTLDEIGADAAALGSACLAALAEVSGA<br /> <br /> ==== Length ====<br /> 235<br /> <br /> ==== Predicted Localization ====<br /> Secreted<br /> <br /> ==== Putative Function ====<br /> Heme bromoperoxidase<br /> <br /> ----<br /> <br /> == ''M. bovis'' HP A0A083W2L5 ==<br /> <br /> &lt;Structure load='A0A083W2L5.pdb' size='300' frame='true' align='right' caption='''M. bovis'' HP A0A083W2L5' scene='72/728008/A0a083w2l5/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Glycine rich protein<br /> <br /> ==== Sequence ====<br /> MEEVPTGPPAMGHRACGGQKAAFPTRMNSGVEKMYKNSIAIAIGTLTMAVEFSMVSANAE<br /> <br /> PAPPPGQDPHMPNSAMGYCPGGGFGGITGWGYCDGIRYPDGSYWHQVRVPAPFVGTTLTL<br /> <br /> SCVIDDGSPVPPLAAPGSCGGGA<br /> <br /> ==== Length ====<br /> 143<br /> <br /> ==== Predicted Localization ====<br /> Secreted<br /> <br /> ==== Putative Function ====<br /> Type 2 secretory system protein (major Pseudopilin-like)<br /> <br /> ----</div>

Bhaskar Ganguly https://proteopedia.org/index.php?title=File:A0A083WED4.pdb&diff=2586947 2016-04-13T11:53:40Z

<p>Bhaskar Ganguly: </p> <hr /> <div>== Licensing ==<br /> {{self|cc-by-sa-3.0|GFDL}}</div>

Bhaskar Ganguly https://proteopedia.org/index.php?title=User:Bhaskar_Ganguly/MyBo_HyPo&diff=2586552 2016-04-11T11:42:42Z

<p>Bhaskar Ganguly: </p> <hr /> <div>'''The ''MyBo'' HyPo Project'''<br /> ----<br /> <br /> Welcome to the ''Mycobacterium bovis''' Hypothetical Protein (''MyBo'' HyPo) Project.<br /> <br /> The MyBo HyPo Project aims towards a computational characterization of all hypothetical proteins of ''M. bovis''. A Hypothetical Protein (HP) is one that is known to exist only on the basis of a corresponding gene but without any function assigned to it. Characterization of HPs of a pathogen has a potential for unraveling hitherto unknown drug and vaccine targets. ''M. bovis'' is an important veterinary pathogen of zoonotic significance, responsible for causing nearly 3% of all human cases of tuberculosis in the developing world.<br /> <br /> As for now, computationally-derived models of 14 ''M. bovis'' HP UniRefs, obtained at a 90% sequence identity cut-off from all HPs of ''M. bovis'' in the UniProt Database, are being included. These models shall be updated as and when models of better quality become available. We also plan to add models of ''M. bovis'' HP sequences from other databases over the coming periods of time.<br /> - ''Bhaskar Ganguly'', Ph.D.; ''Sunil Kr. Rastogi'', Ph.D.<br /> <br /> <br /> (Note: It may take a while for the models to load completely. Your web browser must be configured to run Java for visualization of the interactive protein models. Right click on a model to download it and for access to more options. Left click and drag a model to rotate view.)<br /> <br /> <br /> == ''M. bovis'' HP A0A083W064 ==<br /> <br /> &lt;Structure load='A0A083W064.pdb' size='300' frame='true' align='right' caption='''M. bovis'' HP A0A083W064' scene='72/728008/A0a083w064/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Hypothetical arginine and alanine rich protein<br /> <br /> ==== Sequence ====<br /> MARQPLEQRVARAAQAALARQRFVSAIDVLLGLGWLAPSHVDQWRQGRVDSLEQVVQANL<br /> <br /> SKITAVMAALRRWARDRGLNPSETDYVARTRDRRRLRFSVTGEDAIERAYRTHWVSPELS<br /> <br /> ERAVARQSRRPDLVVIMPVNDWSCASCGGSGDLMFLEDAGPLCLDCADLGHLVFLPSGDA<br /> <br /> ALTRRAKRASRLSAVVVRWSRARKRYERQGILVEAEALERAENECLADAEVRARRRERDE<br /> <br /> ARRANEDLRLQAEFGAAIRTLFPNCPAGRAEAIARHAATRGSGRIGRSAAGRALDPEAVR<br /> <br /> LAVAASVRHIDTSFDELLMSGVDRETARHRVGEHVEEVLRDWRATSR<br /> <br /> ==== Length ====<br /> 347<br /> <br /> ==== Predicted Localization ====<br /> Cytoplasmic<br /> <br /> ==== Putative Function ====<br /> Arginine decarboxylase<br /> <br /> ----<br /> <br /> == ''M. bovis'' HP A0A083W0M1 ==<br /> <br /> &lt;Structure load='A0A083W0M1.pdb' size='300' frame='true' align='right' caption='''M. bovis'' HP A0A083W0M1' scene='72/728008/A0a083w0m1/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Conserved hypothetical alanine rich protein<br /> <br /> ==== Sequence ====<br /> MSTFRECRSMFDAAVKSYQSGDLANARAAFGRLTVENPDMSDGWLGLLACGDHHLDTLAG<br /> <br /> AHQHSEALYSETRRVGLTDGELSAVVMAPMYLGLRVWSRATIGLAYASALIIADRHDEAA<br /> <br /> ATLDDPVITEDTGAAQYRQFVMATLFHKTRSWSNLLKVTEISPPSGATDVRDEVADAVAA<br /> <br /> LASTAAASLGQFQFALELAEQVSTTNPRVTADVTLTRAWCLRELGDDDAARVALSATTTG<br /> <br /> DAPRTNTTAEQAGSPQPKFRHPYDDGRDLLVARRRPPAGDGWRKAVTKMTFGRVNPEPSA<br /> <br /> KREQTDELIQRICAPLADVHKLAFVSAKGGVGKTTMTVLVGNAVARLRGDRVMAVDVDAD<br /> <br /> LGDLSARFSERGGPQTNIEHFVSSQHTKRYADVRVHTVMNKDRLEMLGAQNDPRSTYKFG<br /> <br /> PEDYGAAMQILETHCNVILLDCGTPVNGPLFSNILNDVTGLVVVASEDVRGVEGALVTLD<br /> <br /> WLGAHGFGRLLQHTVVVLNAIQKTRSLVDCGAAENQFRKRVPDFFRIPYDPHLATGLAVD<br /> <br /> FSSLKRRTRNAVLDLAGGLAQHYPASRVRPRGEDSWKTWIETMRQVG<br /> <br /> ==== Length ====<br /> 587<br /> <br /> ==== Predicted Localization ====<br /> Cytoplasmic<br /> <br /> ==== Putative Function ====<br /> Cell Division Inhibitor MIND<br /> <br /> ----<br /> <br /> == ''M. bovis'' HP A0A0C7DGT6 ==<br /> <br /> &lt;Structure load='A0A0C7DGT6.pdb' size='300' frame='true' align='right' caption='''M. bovis'' HP A0A0C7DGT6' scene='72/728008/A0a0c7dgt6/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Conserved hypothetical alanine and proline rich protein<br /> <br /> ==== Sequence ====<br /> MADRLNVAERLAEGRPAAEHTQSYVRACHLVGYQHPDLTAYPAQIHDWYGSEDGLDLHAL<br /> <br /> DADCAQLRAAASVLMEALRMERSQVAVLAAAWTGSGADAAVHFVQRHCETGNSVVTEVRA<br /> <br /> AAQRCESLRDNLWQLVDSKVATAIAIDERALAQRPAWLAAAEALTTEGADRPTAVEVVRQ<br /> <br /> QIQPYVDDDVRNDWLTTMRSTTAGVAASYDAVTDQLASAPRAHFEIPDDLGPGRQPSPAS<br /> <br /> VPAQPSATAAITPAAALPPPDPVPAVTSRPVTPSDFGSAPGDGSATPAGVGSAGGFGDAG<br /> <br /> GTGGLGGFAGLAGLANRIVDAVDSLLGSVAEQLGDPLAADNPPGAVDPFAEDAADNADDG<br /> <br /> DDAHPEEAGEAAEPKEATEPDEADEVDDADESVPAERAQDVAEEATLPPVAEPPPPAAPP<br /> <br /> VAEPPPPVAAPAPPGAPEPANGPSPEALSEGATPCEIAADELPQAGP<br /> <br /> ==== Length ====<br /> 467<br /> <br /> ==== Predicted Localization ====<br /> Cytoplasmic<br /> <br /> ==== Putative Function ====<br /> Undetermined<br /> <br /> ----<br /> <br /> == ''M. bovis'' HP A0A083VPW0 ==<br /> <br /> &lt;Structure load='A0A083VPW0.pdb' size='300' frame='true' align='right' caption='''M. bovis'' HP A0A083VPW0' scene='72/728008/A0a083vpw0/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Conserved hypothetical alanine rich protein<br /> <br /> ==== Sequence ====<br /> MVAADLPPGRWSAVLVGAWWPAPSAALRAAAQHWATWAMQKQELARNLISQHDLLLRNQG<br /> <br /> RTAEDLIGRYLRGAKSEVTKAEKYEIKKGAFNTAADAIDYLRSRLTGIAGEGNKEIDDVL<br /> <br /> ASKKPLPEQLAEIQAIQTRCNADAANASRDAVDKVMTAMQEILEAEDIGDDPRTWARANG<br /> <br /> FNVDDAPPPRLIRENDLAALTGPGARGGSFGSVEGAGDLASPQSVGAGGFSGSGVQAACS<br /> <br /> QPAPRAIGASSRHASAGPVPPAPVVTTPAAATPPVIATGPRWRCPAGRCRRRPSDRAYRL<br /> <br /> RRLGNRLRPGW<br /> <br /> ==== Length ====<br /> 311<br /> <br /> ==== Predicted Localization ====<br /> Outer Membrane<br /> <br /> ==== Putative Function ====<br /> Rhamnosidase<br /> <br /> ----<br /> <br /> == ''M. bovis'' HP A0A083VTH6 ==<br /> <br /> &lt;Structure load='A0A083VTH6.pdb' size='300' frame='true' align='right' caption='''M. bovis'' HP A0A083VTH6' scene='72/728008/A0a083vth6/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Hypothetical alanine and valine rich protein<br /> <br /> ==== Sequence ====<br /> MSPHRAVIEAGPGAIRRLCCGADVVADTAVSAAALAAIDDQVALLDERPVAVDSLWFDAL<br /> <br /> RSVAVDHRDGPVVVHPSWWSAARVEVVTAAARTLTRDVVVHPRSWLLRQASSGVSAATVV<br /> <br /> VEIAERLVLVAGAEVAAVARRTDAESVAGQVGSVIARMTRGITAVVLIDVPSTVAGAAAL<br /> <br /> AAAIAGAVRGTGSSVVEIDGVRLARLARAALPPSDEPADPAARPATRSRVPTLARVAAAG<br /> <br /> VALALLAPAAVVRHGATTLQRPPTTLLVEGRVALTIPADWSTQRVVSGPGSARVQVTSPA<br /> <br /> DPEVALHVTQSPVPGETLPGTAQRLKRAIDASPAGVFVDFNPSDIRAGRPAVTYREVRAG<br /> <br /> HQVRWTILLDGAVRISVGCQSGPGHEDLLREVCAQAVRSVHAVG<br /> <br /> ==== Length ====<br /> 404<br /> <br /> ==== Predicted Localization ====<br /> Outer Membrane<br /> <br /> ==== Putative Function ====<br /> Photosystem II protein PsbP<br /> <br /> ----<br /> <br /> == ''M. bovis'' HP A0A083VUK1 ==<br /> <br /> &lt;Structure load='A0A083VUK1.pdb' size='300' frame='true' align='right' caption='''M. bovis'' HP A0A083VUK1' scene='72/728008/A0a083vuk1/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Hypothetical proline rich protein<br /> <br /> ==== Sequence ====<br /> MFTGIASHAGALGAALVVLIGAAILHDGPAAADPNQDDRFLALLEKKEIPAVANVPRVID<br /> <br /> AAHKVCRKLDGGMPVNDIVDGLRNDAYNIDPVMRLYPVRLTTTMTRFISAAVEIYCPNHH<br /> <br /> SKMAFAMANFEPGSNEPTHRVAASTRSAVNSGSDLRASVSDMTIMSPGWREPTGAMLASV<br /> <br /> LGAVRAGDPLIPNPPPIPVPPPAAQTLIPPPPIVAPPPPRPAPPQQPPPPPPEVEPPAGV<br /> <br /> PQSGGAAGSGGAGSGGGGGGDGPVEPSPARPMPPGFIRLAP<br /> <br /> ==== Length ====<br /> 281<br /> <br /> ==== Predicted Localization ====<br /> Outer Membrane<br /> <br /> ==== Putative Function ====<br /> Transcriptional activator<br /> <br /> ----<br /> <br /> == ''M. bovis'' HP A0A083W378 ==<br /> <br /> &lt;Structure load='A0A083W378.pdb' size='300' frame='true' align='right' caption='''M. bovis'' HP A0A083W378' scene='72/728008/A0a083w378/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Conserved hypothetical proline rich protein<br /> <br /> ==== Sequence ====<br /> MATGARPALGLSIGVTNLAAVAADHSITRKPVLTLYRQRPPEVGVPSENPRLDEPGLVIT<br /> <br /> DFVDRVGDSVGIVAADGSVYRSEALVADALLALAYTATGGRALPGSVTVTYPAHWGPAAV<br /> <br /> AALDSALRRASEWSHGTSSTAQPLSLLPDAAAALYAIRADPGIPARGIVAVCDFGGSGTG<br /> <br /> ITLVDAADEYRPVAATVRHQAFSGDLIDQSLLSYVMSELPGTGAFDPAGTSAIGSLTKLR<br /> <br /> IECRKAKERLSSSTVTTLTDALGGDIRLTRNELEDTIRDSLDSVGRALEQTLARSGIRTA<br /> <br /> ELVAIVSVGGGANIPAVTTTLSGRFCVPVVRTPRPQLTAAFGGALWAARRPGDTSATVLT<br /> <br /> AVTSATATAPADAPASVLQPALAWSEADEDSHIGPAPGYTAARPSLSFDHDAHAEPEPKS<br /> <br /> PPIPWYRLPAVIITGTTVAVLLVGAAVAIGLSTGDQPTAPGTPQRPGVTTTAAPPPSPAP<br /> <br /> ASDGPTTEPAPPVQAPATGGPAPPLQQPLPPPPTTTNTQPAVTTDVITPAPTTPASAPPA<br /> <br /> TTQPPATTQPPATTSPSPPPIPPIPPIPEIPQLPPGIPQVPGIGQFSAISGS<br /> <br /> ==== Length ====<br /> 592<br /> <br /> ==== Predicted Localization ====<br /> Outer Membrane<br /> <br /> ==== Putative Function ====<br /> Chaperone (DnaK-like)<br /> <br /> ----<br /> <br /> == ''M. bovis'' HP A0A093N4V5 ==<br /> <br /> &lt;Structure load='A0A093N4V5.pdb' size='300' frame='true' align='right' caption='''M. bovis'' HP A0A093N4V5' scene='72/728008/A0a093n4v5/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Hypothetical glycine rich protein<br /> <br /> ==== Sequence ====<br /> MAFVDLRYPWCRGDGWISPPVVAVALGWAMRRKPFSRFNEYVGSASNTCWFARALELRTL<br /> <br /> LIR<br /> <br /> ==== Length ====<br /> 63<br /> <br /> ==== Predicted Localization ====<br /> Outer Membrane<br /> <br /> ==== Putative Function ====<br /> Transcriptional repressor (KorB-like)<br /> <br /> ----<br /> <br /> == ''M. bovis'' HP A0A0C7DM56 ==<br /> <br /> &lt;Structure load='A0A0C7DM56.pdb' size='300' frame='true' align='right' caption='''M. bovis'' HP A0A0C7DM56' scene='72/728008/A0a0c7dm56/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Alanine and arginine and proline rich protein<br /> <br /> ==== Sequence ====<br /> MMASNQTAAQHSSATLQQAPRSIDDAGGCPLTISPIANSPGDTFAVTPVVEYEPPPRNIP<br /> <br /> PCGQSSHAARRPHTPQLARRQPIRPSGRAPAAVTSTAKSPRLRQAGTFADAALRRVLEVI<br /> <br /> DRRRPVGQLRPLLAPGLVDSVLAVSRTAAGHQQGAAMLRRIRLTPAGPDTADTAAEVFGT<br /> <br /> YSRGDRIHAIACRVEQRPAGNETRWLMVALHIG<br /> <br /> ==== Length ====<br /> 213<br /> <br /> ==== Predicted Localization ====<br /> Outer Membrane<br /> <br /> ==== Putative Function ====<br /> Palmitoyl CoA hydrolase<br /> <br /> ----<br /> <br /> == ''M. bovis'' HP A0A0C7DHL0 ==<br /> <br /> &lt;Structure load='A0A0C7DHL0.pdb' size='300' frame='true' align='right' caption='''M. bovis'' HP A0A0C7DHL0' scene='72/728008/A0a0c7dhl0/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Conserved hypothetical alanine rich protein<br /> <br /> ==== Sequence ====<br /> MAEPLAVDPTGLSAAAAKLAGLVFPQPPAPIAVSGTDSVVAAINKTMPSIESLVSDGLPG<br /> <br /> VKAALTRTASNMNAAADVYAKTDQSLGTSLSQYAFGSSGEGLAGVASVGGQPSQATQLLS<br /> <br /> TPVSQVTTQLGETAAELAPRVVATVPQLVQLAPHAVQMSQNASPIAQTISQTAQQAAQSA<br /> <br /> QGGSGPMPAQLASAEKPATEQAEPVHEVTNDDQGDQGDVQPAEVVAAARDEGAGASPGQQ<br /> <br /> PGGGVPAQAMDTGAGARPAASPLAAPVDPSTPAPSTTTTL<br /> <br /> ==== Length ====<br /> 280<br /> <br /> ==== Predicted Localization ====<br /> Secreted<br /> <br /> ==== Putative Function ====<br /> ESX-1 secretion-associated protein EspB<br /> <br /> ----<br /> <br /> == ''M. bovis'' HP A0A083VPS0 ==<br /> <br /> &lt;Structure load='A0A083VPS0.pdb' size='300' frame='true' align='right' caption='''M. bovis'' HP A0A083VPS0' scene='72/728006/Mybo_hp_a0a083vps0/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Alanine and proline rich protein<br /> <br /> ==== Sequence ====<br /> MAPLAVDPAALDSAGGAVVAAGAGLGAVISSLTAALAGCAGMAGDDPAGAVFGRSYDGSA<br /> <br /> AALVQAMSVARNGLCNLGDGVRMSAHNYSLAEAMSDVAGRAAPLPAPPPSGCVGVGAPPS<br /> <br /> AVGGGGGAPKGWGWVAPYIGMIWPNGDSTKLRAAAVAWRSAGTQFALTEIQSTAGPMGVI<br /> <br /> RAQQLPEAGLIESAFADAYASTTAVVGQCHQLAAQLDAYAARIDAVHAAVLDLLARICDP<br /> <br /> LTGIKEVWEFLTDQDEDEIQRIAHDIAVVVDQFSGEVDALAAEITAVVSHAEAVITAMAD<br /> <br /> HAGKQWDRFLHSNPVGVVIDGTGQQLKGFGEEAFGMAKDSWDLGPLRASIDPFGWYRSWE<br /> <br /> EMLTGMAPLAGLGGENAPGVVESWKQFGKSLIHWDEWTTNPNEALGKTVFDAATLALPGG<br /> <br /> PLSKLGSKGRDILAGVRGLKERLEPTTPHLEPPATPPRPGPQPPRIEPPESGHPAPAPAA<br /> <br /> KPAPVPANGPLPHSPTESKPPPVDRPAEPVAPSSASAGQPRVSAATTPGTHVPHGLPQPG<br /> <br /> EHVPAQAPPATTLLGGPPVESAPATAHQPQWATTPAAPAAAPHSTPGGVHSTESGPHGRS<br /> <br /> LSAHGSEPTHDGASHGSGHGSGSEPPGLHAPHREQQLAMHSNEPAGEGWHRLSDEAVDPQ<br /> <br /> YGEPLSRHWDFTDNPADRSRINPVVAQLMEDPNAPFGRDPQGQPYTQERYQERFNSVGPW<br /> <br /> GQQYSNFPPNNGAVPGTRIAYTNLEKFLSDYGPQLDRIGGDQGKYLAIMEHGRPASWEQR<br /> <br /> ALHVTSLRDPYHAYTIDWLPEGWFIEVSEVAPGCGQPGGSIQVRIFDHQNEMRKVEELIR<br /> <br /> RGVLRQ<br /> <br /> ==== Length ====<br /> 846<br /> <br /> ==== Predicted Localization ====<br /> Secreted<br /> <br /> ==== Putative Function ====<br /> Tuberculosis necrotizing toxin<br /> <br /> ----<br /> <br /> == ''M. bovis'' HP A0A083VYR3 ==<br /> <br /> &lt;Structure load='A0A083VYR3.pdb' size='300' frame='true' align='right' caption='''M. bovis'' HP A0A083VYR3' scene='72/728008/A0a083vyr3/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Conserved hypothetical alanine rich protein<br /> <br /> ==== Sequence ====<br /> MAVDLDGVTTVLLPGTGSDNDYVRRAFSAPLRRAGAVLVTPVPHPGRLIDGYRAALDDAA<br /> <br /> RDGPVVVGGVSLGAAVAAAWALEHPDRAVAVLAALPAWTGEPELAPAAQAARYTAARLRC<br /> <br /> DGLAATTTRMRASSPVWLAEELTRSWRVQWPELPDAMEEAAAYVAPSRAELARLVAPLAV<br /> <br /> AAAVDDPIHPLQVAADWVSVAPHAALRTVTLDEIGADAAALGSACLAALAEVSGA<br /> <br /> ==== Length ====<br /> 235<br /> <br /> ==== Predicted Localization ====<br /> Secreted<br /> <br /> ==== Putative Function ====<br /> Heme bromoperoxidase<br /> <br /> ----<br /> <br /> == ''M. bovis'' HP A0A083W2L5 ==<br /> <br /> &lt;Structure load='A0A083W2L5.pdb' size='300' frame='true' align='right' caption='''M. bovis'' HP A0A083W2L5' scene='72/728008/A0a083w2l5/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Glycine rich protein<br /> <br /> ==== Sequence ====<br /> MEEVPTGPPAMGHRACGGQKAAFPTRMNSGVEKMYKNSIAIAIGTLTMAVEFSMVSANAE<br /> <br /> PAPPPGQDPHMPNSAMGYCPGGGFGGITGWGYCDGIRYPDGSYWHQVRVPAPFVGTTLTL<br /> <br /> SCVIDDGSPVPPLAAPGSCGGGA<br /> <br /> ==== Length ====<br /> 143<br /> <br /> ==== Predicted Localization ====<br /> Secreted<br /> <br /> ==== Putative Function ====<br /> Type 2 secretory system protein (major Pseudopilin-like)<br /> <br /> ----</div>

Bhaskar Ganguly https://proteopedia.org/index.php?title=File:A0A093N4V5.pdb&diff=2586551 2016-04-11T11:39:15Z

<p>Bhaskar Ganguly: uploaded a new version of &quot;Image:A0A093N4V5.pdb&quot;</p> <hr /> <div></div>

Bhaskar Ganguly https://proteopedia.org/index.php?title=File:A0A093N4V5.pdb&diff=2586550 2016-04-11T11:39:01Z

<p>Bhaskar Ganguly: </p> <hr /> <div></div>

Bhaskar Ganguly https://proteopedia.org/index.php?title=User:Bhaskar_Ganguly/MyBo_HyPo&diff=2586117 2016-04-10T14:56:59Z

<p>Bhaskar Ganguly: </p> <hr /> <div>'''The ''MyBo'' HyPo Project'''<br /> ----<br /> <br /> Welcome to the ''Mycobacterium bovis''' Hypothetical Protein (''MyBo'' HyPo) Project.<br /> <br /> The MyBo HyPo Project aims towards a computational characterization of all hypothetical proteins of ''M. bovis''. A Hypothetical Protein (HP) is one that is known to exist only on the basis of a corresponding gene but without any function assigned to it. Characterization of HPs of a pathogen has a potential for unraveling hitherto unknown drug and vaccine targets. ''M. bovis'' is an important veterinary pathogen of zoonotic significance, responsible for causing nearly 3% of all human cases of tuberculosis in the developing world.<br /> <br /> As for now, computationally-derived models of 14 ''M. bovis'' HP UniRefs, obtained at a 90% sequence identity cut-off from all HPs of ''M. bovis'' in the UniProt Database, are being included. These models shall be updated as and when models of better quality become available. We also plan to add models of ''M. bovis'' HP sequences from other databases over the coming periods of time.<br /> - ''Bhaskar Ganguly'', Ph.D.; ''Sunil Kr. Rastogi'', Ph.D.<br /> <br /> <br /> (Note: It may take a while for the models to load completely. Your web browser must be configured to run Java for visualization of the interactive protein models. Right click on a model to download it and for access to more options. Left click and drag a model to rotate view.)<br /> <br /> <br /> == ''M. bovis'' HP A0A083W064 ==<br /> <br /> &lt;Structure load='A0A083W064.pdb' size='350' frame='true' align='right' caption='''M. bovis'' HP A0A083W064' scene='72/728008/A0a083w064/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Hypothetical arginine and alanine rich protein<br /> <br /> ==== Sequence ====<br /> MARQPLEQRVARAAQAALARQRFVSAIDVLLGLGWLAPSHVDQWRQGRVDSLEQVVQANL<br /> <br /> SKITAVMAALRRWARDRGLNPSETDYVARTRDRRRLRFSVTGEDAIERAYRTHWVSPELS<br /> <br /> ERAVARQSRRPDLVVIMPVNDWSCASCGGSGDLMFLEDAGPLCLDCADLGHLVFLPSGDA<br /> <br /> ALTRRAKRASRLSAVVVRWSRARKRYERQGILVEAEALERAENECLADAEVRARRRERDE<br /> <br /> ARRANEDLRLQAEFGAAIRTLFPNCPAGRAEAIARHAATRGSGRIGRSAAGRALDPEAVR<br /> <br /> LAVAASVRHIDTSFDELLMSGVDRETARHRVGEHVEEVLRDWRATSR<br /> <br /> ==== Length ====<br /> 347<br /> <br /> ==== Predicted Localization ====<br /> Cytoplasmic<br /> <br /> ==== Putative Function ====<br /> Arginine decarboxylase<br /> <br /> ----<br /> <br /> == ''M. bovis'' HP A0A083W0M1 ==<br /> <br /> &lt;Structure load='A0A083W0M1.pdb' size='350' frame='true' align='right' caption='''M. bovis'' HP A0A083W0M1' scene='72/728008/A0a083w0m1/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Conserved hypothetical alanine rich protein<br /> <br /> ==== Sequence ====<br /> MSTFRECRSMFDAAVKSYQSGDLANARAAFGRLTVENPDMSDGWLGLLACGDHHLDTLAG<br /> <br /> AHQHSEALYSETRRVGLTDGELSAVVMAPMYLGLRVWSRATIGLAYASALIIADRHDEAA<br /> <br /> ATLDDPVITEDTGAAQYRQFVMATLFHKTRSWSNLLKVTEISPPSGATDVRDEVADAVAA<br /> <br /> LASTAAASLGQFQFALELAEQVSTTNPRVTADVTLTRAWCLRELGDDDAARVALSATTTG<br /> <br /> DAPRTNTTAEQAGSPQPKFRHPYDDGRDLLVARRRPPAGDGWRKAVTKMTFGRVNPEPSA<br /> <br /> KREQTDELIQRICAPLADVHKLAFVSAKGGVGKTTMTVLVGNAVARLRGDRVMAVDVDAD<br /> <br /> LGDLSARFSERGGPQTNIEHFVSSQHTKRYADVRVHTVMNKDRLEMLGAQNDPRSTYKFG<br /> <br /> PEDYGAAMQILETHCNVILLDCGTPVNGPLFSNILNDVTGLVVVASEDVRGVEGALVTLD<br /> <br /> WLGAHGFGRLLQHTVVVLNAIQKTRSLVDCGAAENQFRKRVPDFFRIPYDPHLATGLAVD<br /> <br /> FSSLKRRTRNAVLDLAGGLAQHYPASRVRPRGEDSWKTWIETMRQVG<br /> <br /> ==== Length ====<br /> 587<br /> <br /> ==== Predicted Localization ====<br /> Cytoplasmic<br /> <br /> ==== Putative Function ====<br /> Cell Division Inhibitor MIND<br /> <br /> ----<br /> <br /> == ''M. bovis'' HP A0A0C7DGT6 ==<br /> <br /> &lt;Structure load='A0A0C7DGT6.pdb' size='350' frame='true' align='right' caption='''M. bovis'' HP A0A0C7DGT6' scene='72/728008/A0a0c7dgt6/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Conserved hypothetical alanine and proline rich protein<br /> <br /> ==== Sequence ====<br /> MADRLNVAERLAEGRPAAEHTQSYVRACHLVGYQHPDLTAYPAQIHDWYGSEDGLDLHAL<br /> <br /> DADCAQLRAAASVLMEALRMERSQVAVLAAAWTGSGADAAVHFVQRHCETGNSVVTEVRA<br /> <br /> AAQRCESLRDNLWQLVDSKVATAIAIDERALAQRPAWLAAAEALTTEGADRPTAVEVVRQ<br /> <br /> QIQPYVDDDVRNDWLTTMRSTTAGVAASYDAVTDQLASAPRAHFEIPDDLGPGRQPSPAS<br /> <br /> VPAQPSATAAITPAAALPPPDPVPAVTSRPVTPSDFGSAPGDGSATPAGVGSAGGFGDAG<br /> <br /> GTGGLGGFAGLAGLANRIVDAVDSLLGSVAEQLGDPLAADNPPGAVDPFAEDAADNADDG<br /> <br /> DDAHPEEAGEAAEPKEATEPDEADEVDDADESVPAERAQDVAEEATLPPVAEPPPPAAPP<br /> <br /> VAEPPPPVAAPAPPGAPEPANGPSPEALSEGATPCEIAADELPQAGP<br /> <br /> ==== Length ====<br /> 467<br /> <br /> ==== Predicted Localization ====<br /> Cytoplasmic<br /> <br /> ==== Putative Function ====<br /> Undetermined<br /> <br /> ----<br /> <br /> == ''M. bovis'' HP A0A083VPW0 ==<br /> <br /> &lt;Structure load='A0A083VPW0.pdb' size='350' frame='true' align='right' caption='''M. bovis'' HP A0A083VPW0' scene='72/728008/A0a083vpw0/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Conserved hypothetical alanine rich protein<br /> <br /> ==== Sequence ====<br /> MVAADLPPGRWSAVLVGAWWPAPSAALRAAAQHWATWAMQKQELARNLISQHDLLLRNQG<br /> <br /> RTAEDLIGRYLRGAKSEVTKAEKYEIKKGAFNTAADAIDYLRSRLTGIAGEGNKEIDDVL<br /> <br /> ASKKPLPEQLAEIQAIQTRCNADAANASRDAVDKVMTAMQEILEAEDIGDDPRTWARANG<br /> <br /> FNVDDAPPPRLIRENDLAALTGPGARGGSFGSVEGAGDLASPQSVGAGGFSGSGVQAACS<br /> <br /> QPAPRAIGASSRHASAGPVPPAPVVTTPAAATPPVIATGPRWRCPAGRCRRRPSDRAYRL<br /> <br /> RRLGNRLRPGW<br /> <br /> ==== Length ====<br /> 311<br /> <br /> ==== Predicted Localization ====<br /> Outer Membrane<br /> <br /> ==== Putative Function ====<br /> Rhamnosidase<br /> <br /> ----<br /> <br /> == ''M. bovis'' HP A0A083VTH6 ==<br /> <br /> &lt;Structure load='A0A083VTH6.pdb' size='350' frame='true' align='right' caption='''M. bovis'' HP A0A083VTH6' scene='72/728008/A0a083vth6/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Hypothetical alanine and valine rich protein<br /> <br /> ==== Sequence ====<br /> MSPHRAVIEAGPGAIRRLCCGADVVADTAVSAAALAAIDDQVALLDERPVAVDSLWFDAL<br /> <br /> RSVAVDHRDGPVVVHPSWWSAARVEVVTAAARTLTRDVVVHPRSWLLRQASSGVSAATVV<br /> <br /> VEIAERLVLVAGAEVAAVARRTDAESVAGQVGSVIARMTRGITAVVLIDVPSTVAGAAAL<br /> <br /> AAAIAGAVRGTGSSVVEIDGVRLARLARAALPPSDEPADPAARPATRSRVPTLARVAAAG<br /> <br /> VALALLAPAAVVRHGATTLQRPPTTLLVEGRVALTIPADWSTQRVVSGPGSARVQVTSPA<br /> <br /> DPEVALHVTQSPVPGETLPGTAQRLKRAIDASPAGVFVDFNPSDIRAGRPAVTYREVRAG<br /> <br /> HQVRWTILLDGAVRISVGCQSGPGHEDLLREVCAQAVRSVHAVG<br /> <br /> ==== Length ====<br /> 404<br /> <br /> ==== Predicted Localization ====<br /> Outer Membrane<br /> <br /> ==== Putative Function ====<br /> Photosystem II protein PsbP<br /> <br /> ----<br /> <br /> == ''M. bovis'' HP A0A083VUK1 ==<br /> <br /> &lt;Structure load='A0A083VUK1.pdb' size='350' frame='true' align='right' caption='''M. bovis'' HP A0A083VUK1' scene='72/728008/A0a083vuk1/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Hypothetical proline rich protein<br /> <br /> ==== Sequence ====<br /> MFTGIASHAGALGAALVVLIGAAILHDGPAAADPNQDDRFLALLEKKEIPAVANVPRVID<br /> <br /> AAHKVCRKLDGGMPVNDIVDGLRNDAYNIDPVMRLYPVRLTTTMTRFISAAVEIYCPNHH<br /> <br /> SKMAFAMANFEPGSNEPTHRVAASTRSAVNSGSDLRASVSDMTIMSPGWREPTGAMLASV<br /> <br /> LGAVRAGDPLIPNPPPIPVPPPAAQTLIPPPPIVAPPPPRPAPPQQPPPPPPEVEPPAGV<br /> <br /> PQSGGAAGSGGAGSGGGGGGDGPVEPSPARPMPPGFIRLAP<br /> <br /> ==== Length ====<br /> 281<br /> <br /> ==== Predicted Localization ====<br /> Outer Membrane<br /> <br /> ==== Putative Function ====<br /> Transcriptional activator<br /> <br /> ----<br /> <br /> == ''M. bovis'' HP A0A083W378 ==<br /> <br /> &lt;Structure load='A0A083W378.pdb' size='350' frame='true' align='right' caption='''M. bovis'' HP A0A083W378' scene='72/728008/A0a083w378/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Conserved hypothetical proline rich protein<br /> <br /> ==== Sequence ====<br /> MATGARPALGLSIGVTNLAAVAADHSITRKPVLTLYRQRPPEVGVPSENPRLDEPGLVIT<br /> <br /> DFVDRVGDSVGIVAADGSVYRSEALVADALLALAYTATGGRALPGSVTVTYPAHWGPAAV<br /> <br /> AALDSALRRASEWSHGTSSTAQPLSLLPDAAAALYAIRADPGIPARGIVAVCDFGGSGTG<br /> <br /> ITLVDAADEYRPVAATVRHQAFSGDLIDQSLLSYVMSELPGTGAFDPAGTSAIGSLTKLR<br /> <br /> IECRKAKERLSSSTVTTLTDALGGDIRLTRNELEDTIRDSLDSVGRALEQTLARSGIRTA<br /> <br /> ELVAIVSVGGGANIPAVTTTLSGRFCVPVVRTPRPQLTAAFGGALWAARRPGDTSATVLT<br /> <br /> AVTSATATAPADAPASVLQPALAWSEADEDSHIGPAPGYTAARPSLSFDHDAHAEPEPKS<br /> <br /> PPIPWYRLPAVIITGTTVAVLLVGAAVAIGLSTGDQPTAPGTPQRPGVTTTAAPPPSPAP<br /> <br /> ASDGPTTEPAPPVQAPATGGPAPPLQQPLPPPPTTTNTQPAVTTDVITPAPTTPASAPPA<br /> <br /> TTQPPATTQPPATTSPSPPPIPPIPPIPEIPQLPPGIPQVPGIGQFSAISGS<br /> <br /> ==== Length ====<br /> 592<br /> <br /> ==== Predicted Localization ====<br /> Outer Membrane<br /> <br /> ==== Putative Function ====<br /> Chaperone (DnaK-like)<br /> <br /> ----<br /> <br /> == ''M. bovis'' HP A0A0C7DM56 ==<br /> <br /> &lt;Structure load='A0A0C7DM56.pdb' size='350' frame='true' align='right' caption='''M. bovis'' HP A0A0C7DM56' scene='72/728008/A0a0c7dm56/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Alanine and arginine and proline rich protein<br /> <br /> ==== Sequence ====<br /> MMASNQTAAQHSSATLQQAPRSIDDAGGCPLTISPIANSPGDTFAVTPVVEYEPPPRNIP<br /> <br /> PCGQSSHAARRPHTPQLARRQPIRPSGRAPAAVTSTAKSPRLRQAGTFADAALRRVLEVI<br /> <br /> DRRRPVGQLRPLLAPGLVDSVLAVSRTAAGHQQGAAMLRRIRLTPAGPDTADTAAEVFGT<br /> <br /> YSRGDRIHAIACRVEQRPAGNETRWLMVALHIG<br /> <br /> ==== Length ====<br /> 213<br /> <br /> ==== Predicted Localization ====<br /> Outer Membrane<br /> <br /> ==== Putative Function ====<br /> Palmitoyl CoA hydrolase<br /> <br /> ----<br /> <br /> == ''M. bovis'' HP A0A0C7DHL0 ==<br /> <br /> &lt;Structure load='A0A0C7DHL0.pdb' size='350' frame='true' align='right' caption='''M. bovis'' HP A0A0C7DHL0' scene='72/728008/A0a0c7dhl0/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Conserved hypothetical alanine rich protein<br /> <br /> ==== Sequence ====<br /> MAEPLAVDPTGLSAAAAKLAGLVFPQPPAPIAVSGTDSVVAAINKTMPSIESLVSDGLPG<br /> <br /> VKAALTRTASNMNAAADVYAKTDQSLGTSLSQYAFGSSGEGLAGVASVGGQPSQATQLLS<br /> <br /> TPVSQVTTQLGETAAELAPRVVATVPQLVQLAPHAVQMSQNASPIAQTISQTAQQAAQSA<br /> <br /> QGGSGPMPAQLASAEKPATEQAEPVHEVTNDDQGDQGDVQPAEVVAAARDEGAGASPGQQ<br /> <br /> PGGGVPAQAMDTGAGARPAASPLAAPVDPSTPAPSTTTTL<br /> <br /> ==== Length ====<br /> 280<br /> <br /> ==== Predicted Localization ====<br /> Secreted<br /> <br /> ==== Putative Function ====<br /> ESX-1 secretion-associated protein EspB<br /> <br /> ----<br /> <br /> == ''M. bovis'' HP A0A083VPS0 ==<br /> <br /> &lt;Structure load='A0A083VPS0.pdb' size='350' frame='true' align='right' caption='''M. bovis'' HP A0A083VPS0' scene='72/728006/Mybo_hp_a0a083vps0/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Alanine and proline rich protein<br /> <br /> ==== Sequence ====<br /> MAPLAVDPAALDSAGGAVVAAGAGLGAVISSLTAALAGCAGMAGDDPAGAVFGRSYDGSA<br /> <br /> AALVQAMSVARNGLCNLGDGVRMSAHNYSLAEAMSDVAGRAAPLPAPPPSGCVGVGAPPS<br /> <br /> AVGGGGGAPKGWGWVAPYIGMIWPNGDSTKLRAAAVAWRSAGTQFALTEIQSTAGPMGVI<br /> <br /> RAQQLPEAGLIESAFADAYASTTAVVGQCHQLAAQLDAYAARIDAVHAAVLDLLARICDP<br /> <br /> LTGIKEVWEFLTDQDEDEIQRIAHDIAVVVDQFSGEVDALAAEITAVVSHAEAVITAMAD<br /> <br /> HAGKQWDRFLHSNPVGVVIDGTGQQLKGFGEEAFGMAKDSWDLGPLRASIDPFGWYRSWE<br /> <br /> EMLTGMAPLAGLGGENAPGVVESWKQFGKSLIHWDEWTTNPNEALGKTVFDAATLALPGG<br /> <br /> PLSKLGSKGRDILAGVRGLKERLEPTTPHLEPPATPPRPGPQPPRIEPPESGHPAPAPAA<br /> <br /> KPAPVPANGPLPHSPTESKPPPVDRPAEPVAPSSASAGQPRVSAATTPGTHVPHGLPQPG<br /> <br /> EHVPAQAPPATTLLGGPPVESAPATAHQPQWATTPAAPAAAPHSTPGGVHSTESGPHGRS<br /> <br /> LSAHGSEPTHDGASHGSGHGSGSEPPGLHAPHREQQLAMHSNEPAGEGWHRLSDEAVDPQ<br /> <br /> YGEPLSRHWDFTDNPADRSRINPVVAQLMEDPNAPFGRDPQGQPYTQERYQERFNSVGPW<br /> <br /> GQQYSNFPPNNGAVPGTRIAYTNLEKFLSDYGPQLDRIGGDQGKYLAIMEHGRPASWEQR<br /> <br /> ALHVTSLRDPYHAYTIDWLPEGWFIEVSEVAPGCGQPGGSIQVRIFDHQNEMRKVEELIR<br /> <br /> RGVLRQ<br /> <br /> ==== Length ====<br /> 846<br /> <br /> ==== Predicted Localization ====<br /> Secreted<br /> <br /> ==== Putative Function ====<br /> Tuberculosis necrotizing toxin<br /> <br /> ----<br /> <br /> == ''M. bovis'' HP A0A083VYR3 ==<br /> <br /> &lt;Structure load='A0A083VYR3.pdb' size='350' frame='true' align='right' caption='''M. bovis'' HP A0A083VYR3' scene='72/728008/A0a083vyr3/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Conserved hypothetical alanine rich protein<br /> <br /> ==== Sequence ====<br /> MAVDLDGVTTVLLPGTGSDNDYVRRAFSAPLRRAGAVLVTPVPHPGRLIDGYRAALDDAA<br /> <br /> RDGPVVVGGVSLGAAVAAAWALEHPDRAVAVLAALPAWTGEPELAPAAQAARYTAARLRC<br /> <br /> DGLAATTTRMRASSPVWLAEELTRSWRVQWPELPDAMEEAAAYVAPSRAELARLVAPLAV<br /> <br /> AAAVDDPIHPLQVAADWVSVAPHAALRTVTLDEIGADAAALGSACLAALAEVSGA<br /> <br /> ==== Length ====<br /> 235<br /> <br /> ==== Predicted Localization ====<br /> Secreted<br /> <br /> ==== Putative Function ====<br /> Heme bromoperoxidase<br /> <br /> ----<br /> <br /> == ''M. bovis'' HP A0A083W2L5 ==<br /> <br /> &lt;Structure load='A0A083W2L5.pdb' size='350' frame='true' align='right' caption='''M. bovis'' HP A0A083W2L5' scene='72/728008/A0a083w2l5/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Glycine rich protein<br /> <br /> ==== Sequence ====<br /> MEEVPTGPPAMGHRACGGQKAAFPTRMNSGVEKMYKNSIAIAIGTLTMAVEFSMVSANAE<br /> <br /> PAPPPGQDPHMPNSAMGYCPGGGFGGITGWGYCDGIRYPDGSYWHQVRVPAPFVGTTLTL<br /> <br /> SCVIDDGSPVPPLAAPGSCGGGA<br /> <br /> ==== Length ====<br /> 143<br /> <br /> ==== Predicted Localization ====<br /> Secreted<br /> <br /> ==== Putative Function ====<br /> Type 2 secretory system protein (major Pseudopilin-like)<br /> <br /> ----</div>

Bhaskar Ganguly https://proteopedia.org/index.php?title=User:Bhaskar_Ganguly/MyBo_HyPo&diff=2586116 2016-04-10T14:37:26Z

<p>Bhaskar Ganguly: </p> <hr /> <div>'''The ''MyBo'' HyPo Project'''<br /> ----<br /> <br /> Welcome to the ''Mycobacterium bovis''' Hypothetical Protein (''MyBo'' HyPo) Project.<br /> <br /> The MyBo HyPo Project aims towards a computational characterization of all hypothetical proteins of ''M. bovis''. A Hypothetical Protein (HP) is one that is known to exist only on the basis of a corresponding gene but without any function assigned to it. Characterization of HPs of a pathogen has a potential for unraveling hitherto unknown drug and vaccine targets. ''M. bovis'' is an important veterinary pathogen of zoonotic significance, responsible for causing nearly 3% of all human cases of tuberculosis in the developing world.<br /> <br /> As for now, computationally-derived models of 14 ''M. bovis'' HP UniRefs, obtained at a 90% sequence identity cut-off from all HPs of ''M. bovis'' in the UniProt Database, are being included. These models shall be updated as and when models of better quality become available. We also plan to add models of ''M. bovis'' HP sequences from other databases over the coming periods of time.<br /> - ''Bhaskar Ganguly'', Ph.D.; ''Sunil Kr. Rastogi'', Ph.D.<br /> <br /> <br /> (Note: It may take a while for the models to load completely. Your web browser must be configured to run Java for visualization of the interactive protein models, or you may use the latest version of Google Chrome that has Java integrated in it. Right click on a model to download it and for access to more options. Left click and drag a model to rotate view.)<br /> <br /> <br /> == ''M. bovis'' HP A0A083W064 ==<br /> <br /> &lt;Structure load='A0A083W064.pdb' size='350' frame='true' align='right' caption='''M. bovis'' HP A0A083W064' scene='72/728008/A0a083w064/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Hypothetical arginine and alanine rich protein<br /> <br /> ==== Sequence ====<br /> MARQPLEQRVARAAQAALARQRFVSAIDVLLGLGWLAPSHVDQWRQGRVDSLEQVVQANL<br /> <br /> SKITAVMAALRRWARDRGLNPSETDYVARTRDRRRLRFSVTGEDAIERAYRTHWVSPELS<br /> <br /> ERAVARQSRRPDLVVIMPVNDWSCASCGGSGDLMFLEDAGPLCLDCADLGHLVFLPSGDA<br /> <br /> ALTRRAKRASRLSAVVVRWSRARKRYERQGILVEAEALERAENECLADAEVRARRRERDE<br /> <br /> ARRANEDLRLQAEFGAAIRTLFPNCPAGRAEAIARHAATRGSGRIGRSAAGRALDPEAVR<br /> <br /> LAVAASVRHIDTSFDELLMSGVDRETARHRVGEHVEEVLRDWRATSR<br /> <br /> ==== Length ====<br /> 347<br /> <br /> ==== Predicted Localization ====<br /> Cytoplasmic<br /> <br /> ==== Putative Function ====<br /> Arginine decarboxylase<br /> <br /> ----<br /> <br /> == ''M. bovis'' HP A0A083W0M1 ==<br /> <br /> &lt;Structure load='A0A083W0M1.pdb' size='350' frame='true' align='right' caption='''M. bovis'' HP A0A083W0M1' scene='72/728008/A0a083w0m1/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Conserved hypothetical alanine rich protein<br /> <br /> ==== Sequence ====<br /> MSTFRECRSMFDAAVKSYQSGDLANARAAFGRLTVENPDMSDGWLGLLACGDHHLDTLAG<br /> <br /> AHQHSEALYSETRRVGLTDGELSAVVMAPMYLGLRVWSRATIGLAYASALIIADRHDEAA<br /> <br /> ATLDDPVITEDTGAAQYRQFVMATLFHKTRSWSNLLKVTEISPPSGATDVRDEVADAVAA<br /> <br /> LASTAAASLGQFQFALELAEQVSTTNPRVTADVTLTRAWCLRELGDDDAARVALSATTTG<br /> <br /> DAPRTNTTAEQAGSPQPKFRHPYDDGRDLLVARRRPPAGDGWRKAVTKMTFGRVNPEPSA<br /> <br /> KREQTDELIQRICAPLADVHKLAFVSAKGGVGKTTMTVLVGNAVARLRGDRVMAVDVDAD<br /> <br /> LGDLSARFSERGGPQTNIEHFVSSQHTKRYADVRVHTVMNKDRLEMLGAQNDPRSTYKFG<br /> <br /> PEDYGAAMQILETHCNVILLDCGTPVNGPLFSNILNDVTGLVVVASEDVRGVEGALVTLD<br /> <br /> WLGAHGFGRLLQHTVVVLNAIQKTRSLVDCGAAENQFRKRVPDFFRIPYDPHLATGLAVD<br /> <br /> FSSLKRRTRNAVLDLAGGLAQHYPASRVRPRGEDSWKTWIETMRQVG<br /> <br /> ==== Length ====<br /> 587<br /> <br /> ==== Predicted Localization ====<br /> Cytoplasmic<br /> <br /> ==== Putative Function ====<br /> Cell Division Inhibitor MIND<br /> <br /> ----<br /> <br /> == ''M. bovis'' HP A0A0C7DGT6 ==<br /> <br /> &lt;Structure load='A0A0C7DGT6.pdb' size='350' frame='true' align='right' caption='''M. bovis'' HP A0A0C7DGT6' scene='72/728008/A0a0c7dgt6/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Conserved hypothetical alanine and proline rich protein<br /> <br /> ==== Sequence ====<br /> MADRLNVAERLAEGRPAAEHTQSYVRACHLVGYQHPDLTAYPAQIHDWYGSEDGLDLHAL<br /> <br /> DADCAQLRAAASVLMEALRMERSQVAVLAAAWTGSGADAAVHFVQRHCETGNSVVTEVRA<br /> <br /> AAQRCESLRDNLWQLVDSKVATAIAIDERALAQRPAWLAAAEALTTEGADRPTAVEVVRQ<br /> <br /> QIQPYVDDDVRNDWLTTMRSTTAGVAASYDAVTDQLASAPRAHFEIPDDLGPGRQPSPAS<br /> <br /> VPAQPSATAAITPAAALPPPDPVPAVTSRPVTPSDFGSAPGDGSATPAGVGSAGGFGDAG<br /> <br /> GTGGLGGFAGLAGLANRIVDAVDSLLGSVAEQLGDPLAADNPPGAVDPFAEDAADNADDG<br /> <br /> DDAHPEEAGEAAEPKEATEPDEADEVDDADESVPAERAQDVAEEATLPPVAEPPPPAAPP<br /> <br /> VAEPPPPVAAPAPPGAPEPANGPSPEALSEGATPCEIAADELPQAGP<br /> <br /> ==== Length ====<br /> 467<br /> <br /> ==== Predicted Localization ====<br /> Cytoplasmic<br /> <br /> ==== Putative Function ====<br /> Undetermined<br /> <br /> ----<br /> <br /> == ''M. bovis'' HP A0A083VPW0 ==<br /> <br /> &lt;Structure load='A0A083VPW0.pdb' size='350' frame='true' align='right' caption='''M. bovis'' HP A0A083VPW0' scene='72/728008/A0a083vpw0/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Conserved hypothetical alanine rich protein<br /> <br /> ==== Sequence ====<br /> MVAADLPPGRWSAVLVGAWWPAPSAALRAAAQHWATWAMQKQELARNLISQHDLLLRNQG<br /> <br /> RTAEDLIGRYLRGAKSEVTKAEKYEIKKGAFNTAADAIDYLRSRLTGIAGEGNKEIDDVL<br /> <br /> ASKKPLPEQLAEIQAIQTRCNADAANASRDAVDKVMTAMQEILEAEDIGDDPRTWARANG<br /> <br /> FNVDDAPPPRLIRENDLAALTGPGARGGSFGSVEGAGDLASPQSVGAGGFSGSGVQAACS<br /> <br /> QPAPRAIGASSRHASAGPVPPAPVVTTPAAATPPVIATGPRWRCPAGRCRRRPSDRAYRL<br /> <br /> RRLGNRLRPGW<br /> <br /> ==== Length ====<br /> 311<br /> <br /> ==== Predicted Localization ====<br /> Outer Membrane<br /> <br /> ==== Putative Function ====<br /> Rhamnosidase<br /> <br /> ----<br /> <br /> == ''M. bovis'' HP A0A083VTH6 ==<br /> <br /> &lt;Structure load='A0A083VTH6.pdb' size='350' frame='true' align='right' caption='''M. bovis'' HP A0A083VTH6' scene='72/728008/A0a083vth6/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Hypothetical alanine and valine rich protein<br /> <br /> ==== Sequence ====<br /> MSPHRAVIEAGPGAIRRLCCGADVVADTAVSAAALAAIDDQVALLDERPVAVDSLWFDAL<br /> <br /> RSVAVDHRDGPVVVHPSWWSAARVEVVTAAARTLTRDVVVHPRSWLLRQASSGVSAATVV<br /> <br /> VEIAERLVLVAGAEVAAVARRTDAESVAGQVGSVIARMTRGITAVVLIDVPSTVAGAAAL<br /> <br /> AAAIAGAVRGTGSSVVEIDGVRLARLARAALPPSDEPADPAARPATRSRVPTLARVAAAG<br /> <br /> VALALLAPAAVVRHGATTLQRPPTTLLVEGRVALTIPADWSTQRVVSGPGSARVQVTSPA<br /> <br /> DPEVALHVTQSPVPGETLPGTAQRLKRAIDASPAGVFVDFNPSDIRAGRPAVTYREVRAG<br /> <br /> HQVRWTILLDGAVRISVGCQSGPGHEDLLREVCAQAVRSVHAVG<br /> <br /> ==== Length ====<br /> 404<br /> <br /> ==== Predicted Localization ====<br /> Outer Membrane<br /> <br /> ==== Putative Function ====<br /> Photosystem II protein PsbP<br /> <br /> ----<br /> <br /> == ''M. bovis'' HP A0A083VUK1 ==<br /> <br /> &lt;Structure load='A0A083VUK1.pdb' size='350' frame='true' align='right' caption='''M. bovis'' HP A0A083VUK1' scene='72/728008/A0a083vuk1/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Hypothetical proline rich protein<br /> <br /> ==== Sequence ====<br /> MFTGIASHAGALGAALVVLIGAAILHDGPAAADPNQDDRFLALLEKKEIPAVANVPRVID<br /> <br /> AAHKVCRKLDGGMPVNDIVDGLRNDAYNIDPVMRLYPVRLTTTMTRFISAAVEIYCPNHH<br /> <br /> SKMAFAMANFEPGSNEPTHRVAASTRSAVNSGSDLRASVSDMTIMSPGWREPTGAMLASV<br /> <br /> LGAVRAGDPLIPNPPPIPVPPPAAQTLIPPPPIVAPPPPRPAPPQQPPPPPPEVEPPAGV<br /> <br /> PQSGGAAGSGGAGSGGGGGGDGPVEPSPARPMPPGFIRLAP<br /> <br /> ==== Length ====<br /> 281<br /> <br /> ==== Predicted Localization ====<br /> Outer Membrane<br /> <br /> ==== Putative Function ====<br /> Transcriptional activator<br /> <br /> ----<br /> <br /> == ''M. bovis'' HP A0A083W378 ==<br /> <br /> &lt;Structure load='A0A083W378.pdb' size='350' frame='true' align='right' caption='''M. bovis'' HP A0A083W378' scene='72/728008/A0a083w378/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Conserved hypothetical proline rich protein<br /> <br /> ==== Sequence ====<br /> MATGARPALGLSIGVTNLAAVAADHSITRKPVLTLYRQRPPEVGVPSENPRLDEPGLVIT<br /> <br /> DFVDRVGDSVGIVAADGSVYRSEALVADALLALAYTATGGRALPGSVTVTYPAHWGPAAV<br /> <br /> AALDSALRRASEWSHGTSSTAQPLSLLPDAAAALYAIRADPGIPARGIVAVCDFGGSGTG<br /> <br /> ITLVDAADEYRPVAATVRHQAFSGDLIDQSLLSYVMSELPGTGAFDPAGTSAIGSLTKLR<br /> <br /> IECRKAKERLSSSTVTTLTDALGGDIRLTRNELEDTIRDSLDSVGRALEQTLARSGIRTA<br /> <br /> ELVAIVSVGGGANIPAVTTTLSGRFCVPVVRTPRPQLTAAFGGALWAARRPGDTSATVLT<br /> <br /> AVTSATATAPADAPASVLQPALAWSEADEDSHIGPAPGYTAARPSLSFDHDAHAEPEPKS<br /> <br /> PPIPWYRLPAVIITGTTVAVLLVGAAVAIGLSTGDQPTAPGTPQRPGVTTTAAPPPSPAP<br /> <br /> ASDGPTTEPAPPVQAPATGGPAPPLQQPLPPPPTTTNTQPAVTTDVITPAPTTPASAPPA<br /> <br /> TTQPPATTQPPATTSPSPPPIPPIPPIPEIPQLPPGIPQVPGIGQFSAISGS<br /> <br /> ==== Length ====<br /> 592<br /> <br /> ==== Predicted Localization ====<br /> Outer Membrane<br /> <br /> ==== Putative Function ====<br /> Chaperone (DnaK-like)<br /> <br /> ----<br /> <br /> == ''M. bovis'' HP A0A0C7DM56 ==<br /> <br /> &lt;Structure load='A0A0C7DM56.pdb' size='350' frame='true' align='right' caption='''M. bovis'' HP A0A0C7DM56' scene='72/728008/A0a0c7dm56/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Alanine and arginine and proline rich protein<br /> <br /> ==== Sequence ====<br /> MMASNQTAAQHSSATLQQAPRSIDDAGGCPLTISPIANSPGDTFAVTPVVEYEPPPRNIP<br /> <br /> PCGQSSHAARRPHTPQLARRQPIRPSGRAPAAVTSTAKSPRLRQAGTFADAALRRVLEVI<br /> <br /> DRRRPVGQLRPLLAPGLVDSVLAVSRTAAGHQQGAAMLRRIRLTPAGPDTADTAAEVFGT<br /> <br /> YSRGDRIHAIACRVEQRPAGNETRWLMVALHIG<br /> <br /> ==== Length ====<br /> 213<br /> <br /> ==== Predicted Localization ====<br /> Outer Membrane<br /> <br /> ==== Putative Function ====<br /> Palmitoyl CoA hydrolase<br /> <br /> ----<br /> <br /> == ''M. bovis'' HP A0A0C7DHL0 ==<br /> <br /> &lt;Structure load='A0A0C7DHL0.pdb' size='350' frame='true' align='right' caption='''M. bovis'' HP A0A0C7DHL0' scene='72/728008/A0a0c7dhl0/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Conserved hypothetical alanine rich protein<br /> <br /> ==== Sequence ====<br /> MAEPLAVDPTGLSAAAAKLAGLVFPQPPAPIAVSGTDSVVAAINKTMPSIESLVSDGLPG<br /> <br /> VKAALTRTASNMNAAADVYAKTDQSLGTSLSQYAFGSSGEGLAGVASVGGQPSQATQLLS<br /> <br /> TPVSQVTTQLGETAAELAPRVVATVPQLVQLAPHAVQMSQNASPIAQTISQTAQQAAQSA<br /> <br /> QGGSGPMPAQLASAEKPATEQAEPVHEVTNDDQGDQGDVQPAEVVAAARDEGAGASPGQQ<br /> <br /> PGGGVPAQAMDTGAGARPAASPLAAPVDPSTPAPSTTTTL<br /> <br /> ==== Length ====<br /> 280<br /> <br /> ==== Predicted Localization ====<br /> Secreted<br /> <br /> ==== Putative Function ====<br /> ESX-1 secretion-associated protein EspB<br /> <br /> ----<br /> <br /> == ''M. bovis'' HP A0A083VPS0 ==<br /> <br /> &lt;Structure load='A0A083VPS0.pdb' size='350' frame='true' align='right' caption='''M. bovis'' HP A0A083VPS0' scene='72/728006/Mybo_hp_a0a083vps0/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Alanine and proline rich protein<br /> <br /> ==== Sequence ====<br /> MAPLAVDPAALDSAGGAVVAAGAGLGAVISSLTAALAGCAGMAGDDPAGAVFGRSYDGSA<br /> <br /> AALVQAMSVARNGLCNLGDGVRMSAHNYSLAEAMSDVAGRAAPLPAPPPSGCVGVGAPPS<br /> <br /> AVGGGGGAPKGWGWVAPYIGMIWPNGDSTKLRAAAVAWRSAGTQFALTEIQSTAGPMGVI<br /> <br /> RAQQLPEAGLIESAFADAYASTTAVVGQCHQLAAQLDAYAARIDAVHAAVLDLLARICDP<br /> <br /> LTGIKEVWEFLTDQDEDEIQRIAHDIAVVVDQFSGEVDALAAEITAVVSHAEAVITAMAD<br /> <br /> HAGKQWDRFLHSNPVGVVIDGTGQQLKGFGEEAFGMAKDSWDLGPLRASIDPFGWYRSWE<br /> <br /> EMLTGMAPLAGLGGENAPGVVESWKQFGKSLIHWDEWTTNPNEALGKTVFDAATLALPGG<br /> <br /> PLSKLGSKGRDILAGVRGLKERLEPTTPHLEPPATPPRPGPQPPRIEPPESGHPAPAPAA<br /> <br /> KPAPVPANGPLPHSPTESKPPPVDRPAEPVAPSSASAGQPRVSAATTPGTHVPHGLPQPG<br /> <br /> EHVPAQAPPATTLLGGPPVESAPATAHQPQWATTPAAPAAAPHSTPGGVHSTESGPHGRS<br /> <br /> LSAHGSEPTHDGASHGSGHGSGSEPPGLHAPHREQQLAMHSNEPAGEGWHRLSDEAVDPQ<br /> <br /> YGEPLSRHWDFTDNPADRSRINPVVAQLMEDPNAPFGRDPQGQPYTQERYQERFNSVGPW<br /> <br /> GQQYSNFPPNNGAVPGTRIAYTNLEKFLSDYGPQLDRIGGDQGKYLAIMEHGRPASWEQR<br /> <br /> ALHVTSLRDPYHAYTIDWLPEGWFIEVSEVAPGCGQPGGSIQVRIFDHQNEMRKVEELIR<br /> <br /> RGVLRQ<br /> <br /> ==== Length ====<br /> 846<br /> <br /> ==== Predicted Localization ====<br /> Secreted<br /> <br /> ==== Putative Function ====<br /> Tuberculosis necrotizing toxin<br /> <br /> ----<br /> <br /> == ''M. bovis'' HP A0A083VYR3 ==<br /> <br /> &lt;Structure load='A0A083VYR3.pdb' size='350' frame='true' align='right' caption='''M. bovis'' HP A0A083VYR3' scene='72/728008/A0a083vyr3/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Conserved hypothetical alanine rich protein<br /> <br /> ==== Sequence ====<br /> MAVDLDGVTTVLLPGTGSDNDYVRRAFSAPLRRAGAVLVTPVPHPGRLIDGYRAALDDAA<br /> <br /> RDGPVVVGGVSLGAAVAAAWALEHPDRAVAVLAALPAWTGEPELAPAAQAARYTAARLRC<br /> <br /> DGLAATTTRMRASSPVWLAEELTRSWRVQWPELPDAMEEAAAYVAPSRAELARLVAPLAV<br /> <br /> AAAVDDPIHPLQVAADWVSVAPHAALRTVTLDEIGADAAALGSACLAALAEVSGA<br /> <br /> ==== Length ====<br /> 235<br /> <br /> ==== Predicted Localization ====<br /> Secreted<br /> <br /> ==== Putative Function ====<br /> Heme bromoperoxidase<br /> <br /> ----<br /> <br /> == ''M. bovis'' HP A0A083W2L5 ==<br /> <br /> &lt;Structure load='A0A083W2L5.pdb' size='350' frame='true' align='right' caption='''M. bovis'' HP A0A083W2L5' scene='72/728008/A0a083w2l5/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Glycine rich protein<br /> <br /> ==== Sequence ====<br /> MEEVPTGPPAMGHRACGGQKAAFPTRMNSGVEKMYKNSIAIAIGTLTMAVEFSMVSANAE<br /> <br /> PAPPPGQDPHMPNSAMGYCPGGGFGGITGWGYCDGIRYPDGSYWHQVRVPAPFVGTTLTL<br /> <br /> SCVIDDGSPVPPLAAPGSCGGGA<br /> <br /> ==== Length ====<br /> 143<br /> <br /> ==== Predicted Localization ====<br /> Secreted<br /> <br /> ==== Putative Function ====<br /> Type 2 secretory system protein (major Pseudopilin-like)<br /> <br /> ----</div>

Bhaskar Ganguly https://proteopedia.org/index.php?title=User:Bhaskar_Ganguly&diff=2586114 2016-04-10T14:07:35Z

<p>Bhaskar Ganguly: </p> <hr /> <div>* Bhaskar Ganguly, Ph.D.<br /> <br /> * Field of Expertise or Study: Animal Biotechnology, Veterinary Biochemistry<br /> <br /> * Formerly, Senior Research Fellow; Animal Biotechnology Center, Department of Veterinary Physiology and Biochemistry, Govind Ballabh Pant University of Agriculture and Technology<br /> <br /> * Pantnagar, Uttarakhand, India. PIN: 263145.<br /> <br /> *[[User:Bhaskar Ganguly/Sandbox 1]]<br /> <br /> *[[User:Bhaskar Ganguly/MyBo_HyPo]]</div>

Bhaskar Ganguly https://proteopedia.org/index.php?title=User:Bhaskar_Ganguly/MyBo_HyPo&diff=2586113 2016-04-10T13:55:05Z

<p>Bhaskar Ganguly: </p> <hr /> <div>'''The ''MyBo'' HyPo Project'''<br /> ----<br /> <br /> Welcome to the ''Mycobacterium bovis''' Hypothetical Protein (''MyBo'' HyPo) Project.<br /> <br /> The MyBo HyPo Project aims towards a computational characterization of all hypothetical proteins of ''M. bovis''. A Hypothetical Protein (HP) is one that is known to exist only on the basis of a corresponding gene but without any function assigned to it. Characterization of HPs of a pathogen has a potential for unraveling hitherto unknown drug and vaccine targets. ''Mycobacterium bovis'' is an important veterinary pathogen of zoonotic significance, responsible for causing nearly 3% of all human cases of tuberculosis in the developing world.<br /> As for now, computationally-derived models of 14 ''M. bovis'' HP UniRefs, obtained at a 90% sequence identity cut-off from the UniProt Database, are being included. These models shall be updated as and when models of better quality become available. We also plan to add models for other sequences over the coming periods of time.<br /> - ''Bhaskar Ganguly'', Ph.D.; ''Sunil Kr. Rastogi'', Ph.D.<br /> <br /> (Note: It may take a while for the models to load completely. Your web browser must be configured to run Java for visualization of the interactive protein models, or you may use the latest version of Google Chrome that has Java integrated in it. Right click on a model to download it and for access to more options. Left click and drag a model to rotate view.)<br /> <br /> <br /> == ''M. bovis'' HP A0A083W064 ==<br /> <br /> &lt;Structure load='A0A083W064.pdb' size='350' frame='true' align='right' caption='''M. bovis'' HP A0A083W064' scene='72/728008/A0a083w064/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Hypothetical arginine and alanine rich protein<br /> <br /> ==== Sequence ====<br /> MARQPLEQRVARAAQAALARQRFVSAIDVLLGLGWLAPSHVDQWRQGRVDSLEQVVQANL<br /> <br /> SKITAVMAALRRWARDRGLNPSETDYVARTRDRRRLRFSVTGEDAIERAYRTHWVSPELS<br /> <br /> ERAVARQSRRPDLVVIMPVNDWSCASCGGSGDLMFLEDAGPLCLDCADLGHLVFLPSGDA<br /> <br /> ALTRRAKRASRLSAVVVRWSRARKRYERQGILVEAEALERAENECLADAEVRARRRERDE<br /> <br /> ARRANEDLRLQAEFGAAIRTLFPNCPAGRAEAIARHAATRGSGRIGRSAAGRALDPEAVR<br /> <br /> LAVAASVRHIDTSFDELLMSGVDRETARHRVGEHVEEVLRDWRATSR<br /> <br /> ==== Length ====<br /> 347<br /> <br /> ==== Predicted Localization ====<br /> Cytoplasmic<br /> <br /> ==== Putative Function ====<br /> Arginine decarboxylase<br /> <br /> ----<br /> <br /> == ''M. bovis'' HP A0A083W0M1 ==<br /> <br /> &lt;Structure load='A0A083W0M1.pdb' size='350' frame='true' align='right' caption='''M. bovis'' HP A0A083W0M1' scene='72/728008/A0a083w0m1/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Conserved hypothetical alanine rich protein<br /> <br /> ==== Sequence ====<br /> MSTFRECRSMFDAAVKSYQSGDLANARAAFGRLTVENPDMSDGWLGLLACGDHHLDTLAG<br /> <br /> AHQHSEALYSETRRVGLTDGELSAVVMAPMYLGLRVWSRATIGLAYASALIIADRHDEAA<br /> <br /> ATLDDPVITEDTGAAQYRQFVMATLFHKTRSWSNLLKVTEISPPSGATDVRDEVADAVAA<br /> <br /> LASTAAASLGQFQFALELAEQVSTTNPRVTADVTLTRAWCLRELGDDDAARVALSATTTG<br /> <br /> DAPRTNTTAEQAGSPQPKFRHPYDDGRDLLVARRRPPAGDGWRKAVTKMTFGRVNPEPSA<br /> <br /> KREQTDELIQRICAPLADVHKLAFVSAKGGVGKTTMTVLVGNAVARLRGDRVMAVDVDAD<br /> <br /> LGDLSARFSERGGPQTNIEHFVSSQHTKRYADVRVHTVMNKDRLEMLGAQNDPRSTYKFG<br /> <br /> PEDYGAAMQILETHCNVILLDCGTPVNGPLFSNILNDVTGLVVVASEDVRGVEGALVTLD<br /> <br /> WLGAHGFGRLLQHTVVVLNAIQKTRSLVDCGAAENQFRKRVPDFFRIPYDPHLATGLAVD<br /> <br /> FSSLKRRTRNAVLDLAGGLAQHYPASRVRPRGEDSWKTWIETMRQVG<br /> <br /> ==== Length ====<br /> 587<br /> <br /> ==== Predicted Localization ====<br /> Cytoplasmic<br /> <br /> ==== Putative Function ====<br /> Cell Division Inhibitor MIND<br /> <br /> ----<br /> <br /> == ''M. bovis'' HP A0A0C7DGT6 ==<br /> <br /> &lt;Structure load='A0A0C7DGT6.pdb' size='350' frame='true' align='right' caption='''M. bovis'' HP A0A0C7DGT6' scene='72/728008/A0a0c7dgt6/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Conserved hypothetical alanine and proline rich protein<br /> <br /> ==== Sequence ====<br /> MADRLNVAERLAEGRPAAEHTQSYVRACHLVGYQHPDLTAYPAQIHDWYGSEDGLDLHAL<br /> <br /> DADCAQLRAAASVLMEALRMERSQVAVLAAAWTGSGADAAVHFVQRHCETGNSVVTEVRA<br /> <br /> AAQRCESLRDNLWQLVDSKVATAIAIDERALAQRPAWLAAAEALTTEGADRPTAVEVVRQ<br /> <br /> QIQPYVDDDVRNDWLTTMRSTTAGVAASYDAVTDQLASAPRAHFEIPDDLGPGRQPSPAS<br /> <br /> VPAQPSATAAITPAAALPPPDPVPAVTSRPVTPSDFGSAPGDGSATPAGVGSAGGFGDAG<br /> <br /> GTGGLGGFAGLAGLANRIVDAVDSLLGSVAEQLGDPLAADNPPGAVDPFAEDAADNADDG<br /> <br /> DDAHPEEAGEAAEPKEATEPDEADEVDDADESVPAERAQDVAEEATLPPVAEPPPPAAPP<br /> <br /> VAEPPPPVAAPAPPGAPEPANGPSPEALSEGATPCEIAADELPQAGP<br /> <br /> ==== Length ====<br /> 467<br /> <br /> ==== Predicted Localization ====<br /> Cytoplasmic<br /> <br /> ==== Putative Function ====<br /> Undetermined<br /> <br /> ----<br /> <br /> == ''M. bovis'' HP A0A083VPW0 ==<br /> <br /> &lt;Structure load='A0A083VPW0.pdb' size='350' frame='true' align='right' caption='''M. bovis'' HP A0A083VPW0' scene='72/728008/A0a083vpw0/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Conserved hypothetical alanine rich protein<br /> <br /> ==== Sequence ====<br /> MVAADLPPGRWSAVLVGAWWPAPSAALRAAAQHWATWAMQKQELARNLISQHDLLLRNQG<br /> <br /> RTAEDLIGRYLRGAKSEVTKAEKYEIKKGAFNTAADAIDYLRSRLTGIAGEGNKEIDDVL<br /> <br /> ASKKPLPEQLAEIQAIQTRCNADAANASRDAVDKVMTAMQEILEAEDIGDDPRTWARANG<br /> <br /> FNVDDAPPPRLIRENDLAALTGPGARGGSFGSVEGAGDLASPQSVGAGGFSGSGVQAACS<br /> <br /> QPAPRAIGASSRHASAGPVPPAPVVTTPAAATPPVIATGPRWRCPAGRCRRRPSDRAYRL<br /> <br /> RRLGNRLRPGW<br /> <br /> ==== Length ====<br /> 311<br /> <br /> ==== Predicted Localization ====<br /> Outer Membrane<br /> <br /> ==== Putative Function ====<br /> Rhamnosidase<br /> <br /> ----<br /> <br /> == ''M. bovis'' HP A0A083VTH6 ==<br /> <br /> &lt;Structure load='A0A083VTH6.pdb' size='350' frame='true' align='right' caption='''M. bovis'' HP A0A083VTH6' scene='72/728008/A0a083vth6/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Hypothetical alanine and valine rich protein<br /> <br /> ==== Sequence ====<br /> MSPHRAVIEAGPGAIRRLCCGADVVADTAVSAAALAAIDDQVALLDERPVAVDSLWFDAL<br /> <br /> RSVAVDHRDGPVVVHPSWWSAARVEVVTAAARTLTRDVVVHPRSWLLRQASSGVSAATVV<br /> <br /> VEIAERLVLVAGAEVAAVARRTDAESVAGQVGSVIARMTRGITAVVLIDVPSTVAGAAAL<br /> <br /> AAAIAGAVRGTGSSVVEIDGVRLARLARAALPPSDEPADPAARPATRSRVPTLARVAAAG<br /> <br /> VALALLAPAAVVRHGATTLQRPPTTLLVEGRVALTIPADWSTQRVVSGPGSARVQVTSPA<br /> <br /> DPEVALHVTQSPVPGETLPGTAQRLKRAIDASPAGVFVDFNPSDIRAGRPAVTYREVRAG<br /> <br /> HQVRWTILLDGAVRISVGCQSGPGHEDLLREVCAQAVRSVHAVG<br /> <br /> ==== Length ====<br /> 404<br /> <br /> ==== Predicted Localization ====<br /> Outer Membrane<br /> <br /> ==== Putative Function ====<br /> Photosystem II protein PsbP<br /> <br /> ----<br /> <br /> == ''M. bovis'' HP A0A083VUK1 ==<br /> <br /> &lt;Structure load='A0A083VUK1.pdb' size='350' frame='true' align='right' caption='''M. bovis'' HP A0A083VUK1' scene='72/728008/A0a083vuk1/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Hypothetical proline rich protein<br /> <br /> ==== Sequence ====<br /> MFTGIASHAGALGAALVVLIGAAILHDGPAAADPNQDDRFLALLEKKEIPAVANVPRVID<br /> <br /> AAHKVCRKLDGGMPVNDIVDGLRNDAYNIDPVMRLYPVRLTTTMTRFISAAVEIYCPNHH<br /> <br /> SKMAFAMANFEPGSNEPTHRVAASTRSAVNSGSDLRASVSDMTIMSPGWREPTGAMLASV<br /> <br /> LGAVRAGDPLIPNPPPIPVPPPAAQTLIPPPPIVAPPPPRPAPPQQPPPPPPEVEPPAGV<br /> <br /> PQSGGAAGSGGAGSGGGGGGDGPVEPSPARPMPPGFIRLAP<br /> <br /> ==== Length ====<br /> 281<br /> <br /> ==== Predicted Localization ====<br /> Outer Membrane<br /> <br /> ==== Putative Function ====<br /> Transcriptional activator<br /> <br /> ----<br /> <br /> == ''M. bovis'' HP A0A083W378 ==<br /> <br /> &lt;Structure load='A0A083W378.pdb' size='350' frame='true' align='right' caption='''M. bovis'' HP A0A083W378' scene='72/728008/A0a083w378/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Conserved hypothetical proline rich protein<br /> <br /> ==== Sequence ====<br /> MATGARPALGLSIGVTNLAAVAADHSITRKPVLTLYRQRPPEVGVPSENPRLDEPGLVIT<br /> <br /> DFVDRVGDSVGIVAADGSVYRSEALVADALLALAYTATGGRALPGSVTVTYPAHWGPAAV<br /> <br /> AALDSALRRASEWSHGTSSTAQPLSLLPDAAAALYAIRADPGIPARGIVAVCDFGGSGTG<br /> <br /> ITLVDAADEYRPVAATVRHQAFSGDLIDQSLLSYVMSELPGTGAFDPAGTSAIGSLTKLR<br /> <br /> IECRKAKERLSSSTVTTLTDALGGDIRLTRNELEDTIRDSLDSVGRALEQTLARSGIRTA<br /> <br /> ELVAIVSVGGGANIPAVTTTLSGRFCVPVVRTPRPQLTAAFGGALWAARRPGDTSATVLT<br /> <br /> AVTSATATAPADAPASVLQPALAWSEADEDSHIGPAPGYTAARPSLSFDHDAHAEPEPKS<br /> <br /> PPIPWYRLPAVIITGTTVAVLLVGAAVAIGLSTGDQPTAPGTPQRPGVTTTAAPPPSPAP<br /> <br /> ASDGPTTEPAPPVQAPATGGPAPPLQQPLPPPPTTTNTQPAVTTDVITPAPTTPASAPPA<br /> <br /> TTQPPATTQPPATTSPSPPPIPPIPPIPEIPQLPPGIPQVPGIGQFSAISGS<br /> <br /> ==== Length ====<br /> 592<br /> <br /> ==== Predicted Localization ====<br /> Outer Membrane<br /> <br /> ==== Putative Function ====<br /> Chaperone (DnaK-like)<br /> <br /> ----<br /> <br /> == ''M. bovis'' HP A0A0C7DM56 ==<br /> <br /> &lt;Structure load='A0A0C7DM56.pdb' size='350' frame='true' align='right' caption='''M. bovis'' HP A0A0C7DM56' scene='72/728008/A0a0c7dm56/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Alanine and arginine and proline rich protein<br /> <br /> ==== Sequence ====<br /> MMASNQTAAQHSSATLQQAPRSIDDAGGCPLTISPIANSPGDTFAVTPVVEYEPPPRNIP<br /> <br /> PCGQSSHAARRPHTPQLARRQPIRPSGRAPAAVTSTAKSPRLRQAGTFADAALRRVLEVI<br /> <br /> DRRRPVGQLRPLLAPGLVDSVLAVSRTAAGHQQGAAMLRRIRLTPAGPDTADTAAEVFGT<br /> <br /> YSRGDRIHAIACRVEQRPAGNETRWLMVALHIG<br /> <br /> ==== Length ====<br /> 213<br /> <br /> ==== Predicted Localization ====<br /> Outer Membrane<br /> <br /> ==== Putative Function ====<br /> Palmitoyl CoA hydrolase<br /> <br /> ----<br /> <br /> == ''M. bovis'' HP A0A0C7DHL0 ==<br /> <br /> &lt;Structure load='A0A0C7DHL0.pdb' size='350' frame='true' align='right' caption='''M. bovis'' HP A0A0C7DHL0' scene='72/728008/A0a0c7dhl0/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Conserved hypothetical alanine rich protein<br /> <br /> ==== Sequence ====<br /> MAEPLAVDPTGLSAAAAKLAGLVFPQPPAPIAVSGTDSVVAAINKTMPSIESLVSDGLPG<br /> <br /> VKAALTRTASNMNAAADVYAKTDQSLGTSLSQYAFGSSGEGLAGVASVGGQPSQATQLLS<br /> <br /> TPVSQVTTQLGETAAELAPRVVATVPQLVQLAPHAVQMSQNASPIAQTISQTAQQAAQSA<br /> <br /> QGGSGPMPAQLASAEKPATEQAEPVHEVTNDDQGDQGDVQPAEVVAAARDEGAGASPGQQ<br /> <br /> PGGGVPAQAMDTGAGARPAASPLAAPVDPSTPAPSTTTTL<br /> <br /> ==== Length ====<br /> 280<br /> <br /> ==== Predicted Localization ====<br /> Secreted<br /> <br /> ==== Putative Function ====<br /> ESX-1 secretion-associated protein EspB<br /> <br /> ----<br /> <br /> == ''M. bovis'' HP A0A083VPS0 ==<br /> <br /> &lt;Structure load='A0A083VPS0.pdb' size='350' frame='true' align='right' caption='''M. bovis'' HP A0A083VPS0' scene='72/728006/Mybo_hp_a0a083vps0/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Alanine and proline rich protein<br /> <br /> ==== Sequence ====<br /> MAPLAVDPAALDSAGGAVVAAGAGLGAVISSLTAALAGCAGMAGDDPAGAVFGRSYDGSA<br /> <br /> AALVQAMSVARNGLCNLGDGVRMSAHNYSLAEAMSDVAGRAAPLPAPPPSGCVGVGAPPS<br /> <br /> AVGGGGGAPKGWGWVAPYIGMIWPNGDSTKLRAAAVAWRSAGTQFALTEIQSTAGPMGVI<br /> <br /> RAQQLPEAGLIESAFADAYASTTAVVGQCHQLAAQLDAYAARIDAVHAAVLDLLARICDP<br /> <br /> LTGIKEVWEFLTDQDEDEIQRIAHDIAVVVDQFSGEVDALAAEITAVVSHAEAVITAMAD<br /> <br /> HAGKQWDRFLHSNPVGVVIDGTGQQLKGFGEEAFGMAKDSWDLGPLRASIDPFGWYRSWE<br /> <br /> EMLTGMAPLAGLGGENAPGVVESWKQFGKSLIHWDEWTTNPNEALGKTVFDAATLALPGG<br /> <br /> PLSKLGSKGRDILAGVRGLKERLEPTTPHLEPPATPPRPGPQPPRIEPPESGHPAPAPAA<br /> <br /> KPAPVPANGPLPHSPTESKPPPVDRPAEPVAPSSASAGQPRVSAATTPGTHVPHGLPQPG<br /> <br /> EHVPAQAPPATTLLGGPPVESAPATAHQPQWATTPAAPAAAPHSTPGGVHSTESGPHGRS<br /> <br /> LSAHGSEPTHDGASHGSGHGSGSEPPGLHAPHREQQLAMHSNEPAGEGWHRLSDEAVDPQ<br /> <br /> YGEPLSRHWDFTDNPADRSRINPVVAQLMEDPNAPFGRDPQGQPYTQERYQERFNSVGPW<br /> <br /> GQQYSNFPPNNGAVPGTRIAYTNLEKFLSDYGPQLDRIGGDQGKYLAIMEHGRPASWEQR<br /> <br /> ALHVTSLRDPYHAYTIDWLPEGWFIEVSEVAPGCGQPGGSIQVRIFDHQNEMRKVEELIR<br /> <br /> RGVLRQ<br /> <br /> ==== Length ====<br /> 846<br /> <br /> ==== Predicted Localization ====<br /> Secreted<br /> <br /> ==== Putative Function ====<br /> Tuberculosis necrotizing toxin<br /> <br /> ----<br /> <br /> == ''M. bovis'' HP A0A083VYR3 ==<br /> <br /> &lt;Structure load='A0A083VYR3.pdb' size='350' frame='true' align='right' caption='''M. bovis'' HP A0A083VYR3' scene='72/728008/A0a083vyr3/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Conserved hypothetical alanine rich protein<br /> <br /> ==== Sequence ====<br /> MAVDLDGVTTVLLPGTGSDNDYVRRAFSAPLRRAGAVLVTPVPHPGRLIDGYRAALDDAA<br /> <br /> RDGPVVVGGVSLGAAVAAAWALEHPDRAVAVLAALPAWTGEPELAPAAQAARYTAARLRC<br /> <br /> DGLAATTTRMRASSPVWLAEELTRSWRVQWPELPDAMEEAAAYVAPSRAELARLVAPLAV<br /> <br /> AAAVDDPIHPLQVAADWVSVAPHAALRTVTLDEIGADAAALGSACLAALAEVSGA<br /> <br /> ==== Length ====<br /> 235<br /> <br /> ==== Predicted Localization ====<br /> Secreted<br /> <br /> ==== Putative Function ====<br /> Heme bromoperoxidase<br /> <br /> ----<br /> <br /> == ''M. bovis'' HP A0A083W2L5 ==<br /> <br /> &lt;Structure load='A0A083W2L5.pdb' size='350' frame='true' align='right' caption='''M. bovis'' HP A0A083W2L5' scene='72/728008/A0a083w2l5/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Glycine rich protein<br /> <br /> ==== Sequence ====<br /> MEEVPTGPPAMGHRACGGQKAAFPTRMNSGVEKMYKNSIAIAIGTLTMAVEFSMVSANAE<br /> <br /> PAPPPGQDPHMPNSAMGYCPGGGFGGITGWGYCDGIRYPDGSYWHQVRVPAPFVGTTLTL<br /> <br /> SCVIDDGSPVPPLAAPGSCGGGA<br /> <br /> ==== Length ====<br /> 143<br /> <br /> ==== Predicted Localization ====<br /> Secreted<br /> <br /> ==== Putative Function ====<br /> Type 2 secretory system protein (major Pseudopilin-like)<br /> <br /> ----</div>

Bhaskar Ganguly https://proteopedia.org/index.php?title=User:Bhaskar_Ganguly/MyBo_HyPo&diff=2586112 2016-04-10T13:42:19Z

<p>Bhaskar Ganguly: </p> <hr /> <div>'''The ''MyBo'' HyPo Project'''<br /> ----<br /> <br /> Welcome to the ''Mycobacterium bovis''' Hypothetical Protein (''MyBo'' HyPo) Project.<br /> <br /> The MyBo HyPo Project aims towards a computational characterization of all hypothetical proteins (HPs) of ''M. bovis''. As for now, computationally-derived models of 14 ''M. bovis'' HP UniRefs, obtained at a 90% sequence identity cut-off from the UniProt Database, are being included. These models shall be updated as and when models of better quality become available. We also plan to add models for other sequences over the coming periods of time.<br /> - ''Bhaskar Ganguly'', Ph.D.; ''Sunil Kr. Rastogi'', Ph.D.<br /> <br /> (Note: It may take a while for the models to load completely. Your web browser must be configured to run Java for visualization of the interactive protein models, or you may use the latest version of Google Chrome that has Java integrated in it. Right click on a model to download it and for access to more options. Left click and drag a model to rotate view.)<br /> <br /> <br /> == ''M. bovis'' HP A0A083W064 ==<br /> <br /> &lt;Structure load='A0A083W064.pdb' size='350' frame='true' align='right' caption='''M. bovis'' HP A0A083W064' scene='72/728008/A0a083w064/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Hypothetical arginine and alanine rich protein<br /> <br /> ==== Sequence ====<br /> MARQPLEQRVARAAQAALARQRFVSAIDVLLGLGWLAPSHVDQWRQGRVDSLEQVVQANL<br /> <br /> SKITAVMAALRRWARDRGLNPSETDYVARTRDRRRLRFSVTGEDAIERAYRTHWVSPELS<br /> <br /> ERAVARQSRRPDLVVIMPVNDWSCASCGGSGDLMFLEDAGPLCLDCADLGHLVFLPSGDA<br /> <br /> ALTRRAKRASRLSAVVVRWSRARKRYERQGILVEAEALERAENECLADAEVRARRRERDE<br /> <br /> ARRANEDLRLQAEFGAAIRTLFPNCPAGRAEAIARHAATRGSGRIGRSAAGRALDPEAVR<br /> <br /> LAVAASVRHIDTSFDELLMSGVDRETARHRVGEHVEEVLRDWRATSR<br /> <br /> ==== Length ====<br /> 347<br /> <br /> ==== Predicted Localization ====<br /> Cytoplasmic<br /> <br /> ==== Putative Function ====<br /> Arginine decarboxylase<br /> <br /> ----<br /> <br /> == ''M. bovis'' HP A0A083W0M1 ==<br /> <br /> &lt;Structure load='A0A083W0M1.pdb' size='350' frame='true' align='right' caption='''M. bovis'' HP A0A083W0M1' scene='72/728008/A0a083w0m1/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Conserved hypothetical alanine rich protein<br /> <br /> ==== Sequence ====<br /> MSTFRECRSMFDAAVKSYQSGDLANARAAFGRLTVENPDMSDGWLGLLACGDHHLDTLAG<br /> <br /> AHQHSEALYSETRRVGLTDGELSAVVMAPMYLGLRVWSRATIGLAYASALIIADRHDEAA<br /> <br /> ATLDDPVITEDTGAAQYRQFVMATLFHKTRSWSNLLKVTEISPPSGATDVRDEVADAVAA<br /> <br /> LASTAAASLGQFQFALELAEQVSTTNPRVTADVTLTRAWCLRELGDDDAARVALSATTTG<br /> <br /> DAPRTNTTAEQAGSPQPKFRHPYDDGRDLLVARRRPPAGDGWRKAVTKMTFGRVNPEPSA<br /> <br /> KREQTDELIQRICAPLADVHKLAFVSAKGGVGKTTMTVLVGNAVARLRGDRVMAVDVDAD<br /> <br /> LGDLSARFSERGGPQTNIEHFVSSQHTKRYADVRVHTVMNKDRLEMLGAQNDPRSTYKFG<br /> <br /> PEDYGAAMQILETHCNVILLDCGTPVNGPLFSNILNDVTGLVVVASEDVRGVEGALVTLD<br /> <br /> WLGAHGFGRLLQHTVVVLNAIQKTRSLVDCGAAENQFRKRVPDFFRIPYDPHLATGLAVD<br /> <br /> FSSLKRRTRNAVLDLAGGLAQHYPASRVRPRGEDSWKTWIETMRQVG<br /> <br /> ==== Length ====<br /> 587<br /> <br /> ==== Predicted Localization ====<br /> Cytoplasmic<br /> <br /> ==== Putative Function ====<br /> Cell Division Inhibitor MIND<br /> <br /> ----<br /> <br /> == ''M. bovis'' HP A0A0C7DGT6 ==<br /> <br /> &lt;Structure load='A0A0C7DGT6.pdb' size='350' frame='true' align='right' caption='''M. bovis'' HP A0A0C7DGT6' scene='72/728008/A0a0c7dgt6/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Conserved hypothetical alanine and proline rich protein<br /> <br /> ==== Sequence ====<br /> MADRLNVAERLAEGRPAAEHTQSYVRACHLVGYQHPDLTAYPAQIHDWYGSEDGLDLHAL<br /> <br /> DADCAQLRAAASVLMEALRMERSQVAVLAAAWTGSGADAAVHFVQRHCETGNSVVTEVRA<br /> <br /> AAQRCESLRDNLWQLVDSKVATAIAIDERALAQRPAWLAAAEALTTEGADRPTAVEVVRQ<br /> <br /> QIQPYVDDDVRNDWLTTMRSTTAGVAASYDAVTDQLASAPRAHFEIPDDLGPGRQPSPAS<br /> <br /> VPAQPSATAAITPAAALPPPDPVPAVTSRPVTPSDFGSAPGDGSATPAGVGSAGGFGDAG<br /> <br /> GTGGLGGFAGLAGLANRIVDAVDSLLGSVAEQLGDPLAADNPPGAVDPFAEDAADNADDG<br /> <br /> DDAHPEEAGEAAEPKEATEPDEADEVDDADESVPAERAQDVAEEATLPPVAEPPPPAAPP<br /> <br /> VAEPPPPVAAPAPPGAPEPANGPSPEALSEGATPCEIAADELPQAGP<br /> <br /> ==== Length ====<br /> 467<br /> <br /> ==== Predicted Localization ====<br /> Cytoplasmic<br /> <br /> ==== Putative Function ====<br /> Undetermined<br /> <br /> ----<br /> <br /> == ''M. bovis'' HP A0A083VPW0 ==<br /> <br /> &lt;Structure load='A0A083VPW0.pdb' size='350' frame='true' align='right' caption='''M. bovis'' HP A0A083VPW0' scene='72/728008/A0a083vpw0/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Conserved hypothetical alanine rich protein<br /> <br /> ==== Sequence ====<br /> MVAADLPPGRWSAVLVGAWWPAPSAALRAAAQHWATWAMQKQELARNLISQHDLLLRNQG<br /> <br /> RTAEDLIGRYLRGAKSEVTKAEKYEIKKGAFNTAADAIDYLRSRLTGIAGEGNKEIDDVL<br /> <br /> ASKKPLPEQLAEIQAIQTRCNADAANASRDAVDKVMTAMQEILEAEDIGDDPRTWARANG<br /> <br /> FNVDDAPPPRLIRENDLAALTGPGARGGSFGSVEGAGDLASPQSVGAGGFSGSGVQAACS<br /> <br /> QPAPRAIGASSRHASAGPVPPAPVVTTPAAATPPVIATGPRWRCPAGRCRRRPSDRAYRL<br /> <br /> RRLGNRLRPGW<br /> <br /> ==== Length ====<br /> 311<br /> <br /> ==== Predicted Localization ====<br /> Outer Membrane<br /> <br /> ==== Putative Function ====<br /> Rhamnosidase<br /> <br /> ----<br /> <br /> == ''M. bovis'' HP A0A083VTH6 ==<br /> <br /> &lt;Structure load='A0A083VTH6.pdb' size='350' frame='true' align='right' caption='''M. bovis'' HP A0A083VTH6' scene='72/728008/A0a083vth6/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Hypothetical alanine and valine rich protein<br /> <br /> ==== Sequence ====<br /> MSPHRAVIEAGPGAIRRLCCGADVVADTAVSAAALAAIDDQVALLDERPVAVDSLWFDAL<br /> <br /> RSVAVDHRDGPVVVHPSWWSAARVEVVTAAARTLTRDVVVHPRSWLLRQASSGVSAATVV<br /> <br /> VEIAERLVLVAGAEVAAVARRTDAESVAGQVGSVIARMTRGITAVVLIDVPSTVAGAAAL<br /> <br /> AAAIAGAVRGTGSSVVEIDGVRLARLARAALPPSDEPADPAARPATRSRVPTLARVAAAG<br /> <br /> VALALLAPAAVVRHGATTLQRPPTTLLVEGRVALTIPADWSTQRVVSGPGSARVQVTSPA<br /> <br /> DPEVALHVTQSPVPGETLPGTAQRLKRAIDASPAGVFVDFNPSDIRAGRPAVTYREVRAG<br /> <br /> HQVRWTILLDGAVRISVGCQSGPGHEDLLREVCAQAVRSVHAVG<br /> <br /> ==== Length ====<br /> 404<br /> <br /> ==== Predicted Localization ====<br /> Outer Membrane<br /> <br /> ==== Putative Function ====<br /> Photosystem II protein PsbP<br /> <br /> ----<br /> <br /> == ''M. bovis'' HP A0A083VUK1 ==<br /> <br /> &lt;Structure load='A0A083VUK1.pdb' size='350' frame='true' align='right' caption='''M. bovis'' HP A0A083VUK1' scene='72/728008/A0a083vuk1/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Hypothetical proline rich protein<br /> <br /> ==== Sequence ====<br /> MFTGIASHAGALGAALVVLIGAAILHDGPAAADPNQDDRFLALLEKKEIPAVANVPRVID<br /> <br /> AAHKVCRKLDGGMPVNDIVDGLRNDAYNIDPVMRLYPVRLTTTMTRFISAAVEIYCPNHH<br /> <br /> SKMAFAMANFEPGSNEPTHRVAASTRSAVNSGSDLRASVSDMTIMSPGWREPTGAMLASV<br /> <br /> LGAVRAGDPLIPNPPPIPVPPPAAQTLIPPPPIVAPPPPRPAPPQQPPPPPPEVEPPAGV<br /> <br /> PQSGGAAGSGGAGSGGGGGGDGPVEPSPARPMPPGFIRLAP<br /> <br /> ==== Length ====<br /> 281<br /> <br /> ==== Predicted Localization ====<br /> Outer Membrane<br /> <br /> ==== Putative Function ====<br /> Transcriptional activator<br /> <br /> ----<br /> <br /> == ''M. bovis'' HP A0A083W378 ==<br /> <br /> &lt;Structure load='A0A083W378.pdb' size='350' frame='true' align='right' caption='''M. bovis'' HP A0A083W378' scene='72/728008/A0a083w378/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Conserved hypothetical proline rich protein<br /> <br /> ==== Sequence ====<br /> MATGARPALGLSIGVTNLAAVAADHSITRKPVLTLYRQRPPEVGVPSENPRLDEPGLVIT<br /> <br /> DFVDRVGDSVGIVAADGSVYRSEALVADALLALAYTATGGRALPGSVTVTYPAHWGPAAV<br /> <br /> AALDSALRRASEWSHGTSSTAQPLSLLPDAAAALYAIRADPGIPARGIVAVCDFGGSGTG<br /> <br /> ITLVDAADEYRPVAATVRHQAFSGDLIDQSLLSYVMSELPGTGAFDPAGTSAIGSLTKLR<br /> <br /> IECRKAKERLSSSTVTTLTDALGGDIRLTRNELEDTIRDSLDSVGRALEQTLARSGIRTA<br /> <br /> ELVAIVSVGGGANIPAVTTTLSGRFCVPVVRTPRPQLTAAFGGALWAARRPGDTSATVLT<br /> <br /> AVTSATATAPADAPASVLQPALAWSEADEDSHIGPAPGYTAARPSLSFDHDAHAEPEPKS<br /> <br /> PPIPWYRLPAVIITGTTVAVLLVGAAVAIGLSTGDQPTAPGTPQRPGVTTTAAPPPSPAP<br /> <br /> ASDGPTTEPAPPVQAPATGGPAPPLQQPLPPPPTTTNTQPAVTTDVITPAPTTPASAPPA<br /> <br /> TTQPPATTQPPATTSPSPPPIPPIPPIPEIPQLPPGIPQVPGIGQFSAISGS<br /> <br /> ==== Length ====<br /> 592<br /> <br /> ==== Predicted Localization ====<br /> Outer Membrane<br /> <br /> ==== Putative Function ====<br /> Chaperone (DnaK-like)<br /> <br /> ----<br /> <br /> == ''M. bovis'' HP A0A0C7DM56 ==<br /> <br /> &lt;Structure load='A0A0C7DM56.pdb' size='350' frame='true' align='right' caption='''M. bovis'' HP A0A0C7DM56' scene='72/728008/A0a0c7dm56/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Alanine and arginine and proline rich protein<br /> <br /> ==== Sequence ====<br /> MMASNQTAAQHSSATLQQAPRSIDDAGGCPLTISPIANSPGDTFAVTPVVEYEPPPRNIP<br /> <br /> PCGQSSHAARRPHTPQLARRQPIRPSGRAPAAVTSTAKSPRLRQAGTFADAALRRVLEVI<br /> <br /> DRRRPVGQLRPLLAPGLVDSVLAVSRTAAGHQQGAAMLRRIRLTPAGPDTADTAAEVFGT<br /> <br /> YSRGDRIHAIACRVEQRPAGNETRWLMVALHIG<br /> <br /> ==== Length ====<br /> 213<br /> <br /> ==== Predicted Localization ====<br /> Outer Membrane<br /> <br /> ==== Putative Function ====<br /> Palmitoyl CoA hydrolase<br /> <br /> ----<br /> <br /> == ''M. bovis'' HP A0A0C7DHL0 ==<br /> <br /> &lt;Structure load='A0A0C7DHL0.pdb' size='350' frame='true' align='right' caption='''M. bovis'' HP A0A0C7DHL0' scene='72/728008/A0a0c7dhl0/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Conserved hypothetical alanine rich protein<br /> <br /> ==== Sequence ====<br /> MAEPLAVDPTGLSAAAAKLAGLVFPQPPAPIAVSGTDSVVAAINKTMPSIESLVSDGLPG<br /> <br /> VKAALTRTASNMNAAADVYAKTDQSLGTSLSQYAFGSSGEGLAGVASVGGQPSQATQLLS<br /> <br /> TPVSQVTTQLGETAAELAPRVVATVPQLVQLAPHAVQMSQNASPIAQTISQTAQQAAQSA<br /> <br /> QGGSGPMPAQLASAEKPATEQAEPVHEVTNDDQGDQGDVQPAEVVAAARDEGAGASPGQQ<br /> <br /> PGGGVPAQAMDTGAGARPAASPLAAPVDPSTPAPSTTTTL<br /> <br /> ==== Length ====<br /> 280<br /> <br /> ==== Predicted Localization ====<br /> Secreted<br /> <br /> ==== Putative Function ====<br /> ESX-1 secretion-associated protein EspB<br /> <br /> ----<br /> <br /> == ''M. bovis'' HP A0A083VPS0 ==<br /> <br /> &lt;Structure load='A0A083VPS0.pdb' size='350' frame='true' align='right' caption='''M. bovis'' HP A0A083VPS0' scene='72/728006/Mybo_hp_a0a083vps0/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Alanine and proline rich protein<br /> <br /> ==== Sequence ====<br /> MAPLAVDPAALDSAGGAVVAAGAGLGAVISSLTAALAGCAGMAGDDPAGAVFGRSYDGSA<br /> <br /> AALVQAMSVARNGLCNLGDGVRMSAHNYSLAEAMSDVAGRAAPLPAPPPSGCVGVGAPPS<br /> <br /> AVGGGGGAPKGWGWVAPYIGMIWPNGDSTKLRAAAVAWRSAGTQFALTEIQSTAGPMGVI<br /> <br /> RAQQLPEAGLIESAFADAYASTTAVVGQCHQLAAQLDAYAARIDAVHAAVLDLLARICDP<br /> <br /> LTGIKEVWEFLTDQDEDEIQRIAHDIAVVVDQFSGEVDALAAEITAVVSHAEAVITAMAD<br /> <br /> HAGKQWDRFLHSNPVGVVIDGTGQQLKGFGEEAFGMAKDSWDLGPLRASIDPFGWYRSWE<br /> <br /> EMLTGMAPLAGLGGENAPGVVESWKQFGKSLIHWDEWTTNPNEALGKTVFDAATLALPGG<br /> <br /> PLSKLGSKGRDILAGVRGLKERLEPTTPHLEPPATPPRPGPQPPRIEPPESGHPAPAPAA<br /> <br /> KPAPVPANGPLPHSPTESKPPPVDRPAEPVAPSSASAGQPRVSAATTPGTHVPHGLPQPG<br /> <br /> EHVPAQAPPATTLLGGPPVESAPATAHQPQWATTPAAPAAAPHSTPGGVHSTESGPHGRS<br /> <br /> LSAHGSEPTHDGASHGSGHGSGSEPPGLHAPHREQQLAMHSNEPAGEGWHRLSDEAVDPQ<br /> <br /> YGEPLSRHWDFTDNPADRSRINPVVAQLMEDPNAPFGRDPQGQPYTQERYQERFNSVGPW<br /> <br /> GQQYSNFPPNNGAVPGTRIAYTNLEKFLSDYGPQLDRIGGDQGKYLAIMEHGRPASWEQR<br /> <br /> ALHVTSLRDPYHAYTIDWLPEGWFIEVSEVAPGCGQPGGSIQVRIFDHQNEMRKVEELIR<br /> <br /> RGVLRQ<br /> <br /> ==== Length ====<br /> 846<br /> <br /> ==== Predicted Localization ====<br /> Secreted<br /> <br /> ==== Putative Function ====<br /> Tuberculosis necrotizing toxin<br /> <br /> ----<br /> <br /> == ''M. bovis'' HP A0A083VYR3 ==<br /> <br /> &lt;Structure load='A0A083VYR3.pdb' size='350' frame='true' align='right' caption='''M. bovis'' HP A0A083VYR3' scene='72/728008/A0a083vyr3/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Conserved hypothetical alanine rich protein<br /> <br /> ==== Sequence ====<br /> MAVDLDGVTTVLLPGTGSDNDYVRRAFSAPLRRAGAVLVTPVPHPGRLIDGYRAALDDAA<br /> <br /> RDGPVVVGGVSLGAAVAAAWALEHPDRAVAVLAALPAWTGEPELAPAAQAARYTAARLRC<br /> <br /> DGLAATTTRMRASSPVWLAEELTRSWRVQWPELPDAMEEAAAYVAPSRAELARLVAPLAV<br /> <br /> AAAVDDPIHPLQVAADWVSVAPHAALRTVTLDEIGADAAALGSACLAALAEVSGA<br /> <br /> ==== Length ====<br /> 235<br /> <br /> ==== Predicted Localization ====<br /> Secreted<br /> <br /> ==== Putative Function ====<br /> Heme bromoperoxidase<br /> <br /> ----</div>

Bhaskar Ganguly https://proteopedia.org/index.php?title=User:Bhaskar_Ganguly/MyBo_HyPo&diff=2586110 2016-04-10T13:34:11Z

<p>Bhaskar Ganguly: </p> <hr /> <div>'''The ''MyBo'' HyPo Project'''<br /> ----<br /> <br /> Welcome to the ''Mycobacterium bovis''' Hypothetical Protein (''MyBo'' HyPo) Project.<br /> <br /> The MyBo HyPo Project aims towards a computational characterization of all hypothetical proteins (HPs) of ''M. bovis''. As for now, computationally-derived models of 14 ''M. bovis'' HP UniRefs, obtained at a 90% sequence identity cut-off from the UniProt Database, are being included. These models shall be updated as and when models of better quality become available. We also plan to add models for other sequences over the coming periods of time.<br /> - ''Bhaskar Ganguly'', Ph.D.; ''Sunil Kr. Rastogi'', Ph.D.<br /> <br /> (Note: It may take a while for the models to load completely. Your web browser must be configured to run Java for visualization of the interactive protein models, or you may use the latest version of Google Chrome that has Java integrated in it. Right click on a model to download it and for access to more options. Left click and drag a model to rotate view.)<br /> <br /> <br /> == ''M. bovis'' HP A0A083W064 ==<br /> <br /> &lt;Structure load='A0A083W064.pdb' size='350' frame='true' align='right' caption='''M. bovis'' HP A0A083W064' scene='72/728008/A0a083w064/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Hypothetical arginine and alanine rich protein<br /> <br /> ==== Sequence ====<br /> MARQPLEQRVARAAQAALARQRFVSAIDVLLGLGWLAPSHVDQWRQGRVDSLEQVVQANL<br /> <br /> SKITAVMAALRRWARDRGLNPSETDYVARTRDRRRLRFSVTGEDAIERAYRTHWVSPELS<br /> <br /> ERAVARQSRRPDLVVIMPVNDWSCASCGGSGDLMFLEDAGPLCLDCADLGHLVFLPSGDA<br /> <br /> ALTRRAKRASRLSAVVVRWSRARKRYERQGILVEAEALERAENECLADAEVRARRRERDE<br /> <br /> ARRANEDLRLQAEFGAAIRTLFPNCPAGRAEAIARHAATRGSGRIGRSAAGRALDPEAVR<br /> <br /> LAVAASVRHIDTSFDELLMSGVDRETARHRVGEHVEEVLRDWRATSR<br /> <br /> ==== Length ====<br /> 347<br /> <br /> ==== Predicted Localization ====<br /> Cytoplasmic<br /> <br /> ==== Putative Function ====<br /> Arginine decarboxylase<br /> <br /> ----<br /> <br /> == ''M. bovis'' HP A0A083W0M1 ==<br /> <br /> &lt;Structure load='A0A083W0M1.pdb' size='350' frame='true' align='right' caption='''M. bovis'' HP A0A083W0M1' scene='72/728008/A0a083w0m1/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Conserved hypothetical alanine rich protein<br /> <br /> ==== Sequence ====<br /> MSTFRECRSMFDAAVKSYQSGDLANARAAFGRLTVENPDMSDGWLGLLACGDHHLDTLAG<br /> <br /> AHQHSEALYSETRRVGLTDGELSAVVMAPMYLGLRVWSRATIGLAYASALIIADRHDEAA<br /> <br /> ATLDDPVITEDTGAAQYRQFVMATLFHKTRSWSNLLKVTEISPPSGATDVRDEVADAVAA<br /> <br /> LASTAAASLGQFQFALELAEQVSTTNPRVTADVTLTRAWCLRELGDDDAARVALSATTTG<br /> <br /> DAPRTNTTAEQAGSPQPKFRHPYDDGRDLLVARRRPPAGDGWRKAVTKMTFGRVNPEPSA<br /> <br /> KREQTDELIQRICAPLADVHKLAFVSAKGGVGKTTMTVLVGNAVARLRGDRVMAVDVDAD<br /> <br /> LGDLSARFSERGGPQTNIEHFVSSQHTKRYADVRVHTVMNKDRLEMLGAQNDPRSTYKFG<br /> <br /> PEDYGAAMQILETHCNVILLDCGTPVNGPLFSNILNDVTGLVVVASEDVRGVEGALVTLD<br /> <br /> WLGAHGFGRLLQHTVVVLNAIQKTRSLVDCGAAENQFRKRVPDFFRIPYDPHLATGLAVD<br /> <br /> FSSLKRRTRNAVLDLAGGLAQHYPASRVRPRGEDSWKTWIETMRQVG<br /> <br /> ==== Length ====<br /> 587<br /> <br /> ==== Predicted Localization ====<br /> Cytoplasmic<br /> <br /> ==== Putative Function ====<br /> Cell Division Inhibitor MIND<br /> <br /> ----<br /> <br /> == ''M. bovis'' HP A0A0C7DGT6 ==<br /> <br /> &lt;Structure load='A0A0C7DGT6.pdb' size='350' frame='true' align='right' caption='''M. bovis'' HP A0A0C7DGT6' scene='72/728008/A0a0c7dgt6/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Conserved hypothetical alanine and proline rich protein<br /> <br /> ==== Sequence ====<br /> MADRLNVAERLAEGRPAAEHTQSYVRACHLVGYQHPDLTAYPAQIHDWYGSEDGLDLHAL<br /> <br /> DADCAQLRAAASVLMEALRMERSQVAVLAAAWTGSGADAAVHFVQRHCETGNSVVTEVRA<br /> <br /> AAQRCESLRDNLWQLVDSKVATAIAIDERALAQRPAWLAAAEALTTEGADRPTAVEVVRQ<br /> <br /> QIQPYVDDDVRNDWLTTMRSTTAGVAASYDAVTDQLASAPRAHFEIPDDLGPGRQPSPAS<br /> <br /> VPAQPSATAAITPAAALPPPDPVPAVTSRPVTPSDFGSAPGDGSATPAGVGSAGGFGDAG<br /> <br /> GTGGLGGFAGLAGLANRIVDAVDSLLGSVAEQLGDPLAADNPPGAVDPFAEDAADNADDG<br /> <br /> DDAHPEEAGEAAEPKEATEPDEADEVDDADESVPAERAQDVAEEATLPPVAEPPPPAAPP<br /> <br /> VAEPPPPVAAPAPPGAPEPANGPSPEALSEGATPCEIAADELPQAGP<br /> <br /> ==== Length ====<br /> 467<br /> <br /> ==== Predicted Localization ====<br /> Cytoplasmic<br /> <br /> ==== Putative Function ====<br /> Undetermined<br /> <br /> ----<br /> <br /> == ''M. bovis'' HP A0A083VPW0 ==<br /> <br /> &lt;Structure load='A0A083VPW0.pdb' size='350' frame='true' align='right' caption='''M. bovis'' HP A0A083VPW0' scene='72/728008/A0a083vpw0/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Conserved hypothetical alanine rich protein<br /> <br /> ==== Sequence ====<br /> MVAADLPPGRWSAVLVGAWWPAPSAALRAAAQHWATWAMQKQELARNLISQHDLLLRNQG<br /> <br /> RTAEDLIGRYLRGAKSEVTKAEKYEIKKGAFNTAADAIDYLRSRLTGIAGEGNKEIDDVL<br /> <br /> ASKKPLPEQLAEIQAIQTRCNADAANASRDAVDKVMTAMQEILEAEDIGDDPRTWARANG<br /> <br /> FNVDDAPPPRLIRENDLAALTGPGARGGSFGSVEGAGDLASPQSVGAGGFSGSGVQAACS<br /> <br /> QPAPRAIGASSRHASAGPVPPAPVVTTPAAATPPVIATGPRWRCPAGRCRRRPSDRAYRL<br /> <br /> RRLGNRLRPGW<br /> <br /> ==== Length ====<br /> 311<br /> <br /> ==== Predicted Localization ====<br /> Outer Membrane<br /> <br /> ==== Putative Function ====<br /> Rhamnosidase<br /> <br /> ----<br /> <br /> == ''M. bovis'' HP A0A083VTH6 ==<br /> <br /> &lt;Structure load='A0A083VTH6.pdb' size='350' frame='true' align='right' caption='''M. bovis'' HP A0A083VTH6' scene='72/728008/A0a083vth6/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Hypothetical alanine and valine rich protein<br /> <br /> ==== Sequence ====<br /> MSPHRAVIEAGPGAIRRLCCGADVVADTAVSAAALAAIDDQVALLDERPVAVDSLWFDAL<br /> <br /> RSVAVDHRDGPVVVHPSWWSAARVEVVTAAARTLTRDVVVHPRSWLLRQASSGVSAATVV<br /> <br /> VEIAERLVLVAGAEVAAVARRTDAESVAGQVGSVIARMTRGITAVVLIDVPSTVAGAAAL<br /> <br /> AAAIAGAVRGTGSSVVEIDGVRLARLARAALPPSDEPADPAARPATRSRVPTLARVAAAG<br /> <br /> VALALLAPAAVVRHGATTLQRPPTTLLVEGRVALTIPADWSTQRVVSGPGSARVQVTSPA<br /> <br /> DPEVALHVTQSPVPGETLPGTAQRLKRAIDASPAGVFVDFNPSDIRAGRPAVTYREVRAG<br /> <br /> HQVRWTILLDGAVRISVGCQSGPGHEDLLREVCAQAVRSVHAVG<br /> <br /> ==== Length ====<br /> 404<br /> <br /> ==== Predicted Localization ====<br /> Outer Membrane<br /> <br /> ==== Putative Function ====<br /> Photosystem II protein PsbP<br /> <br /> ----<br /> <br /> == ''M. bovis'' HP A0A083VUK1 ==<br /> <br /> &lt;Structure load='A0A083VUK1.pdb' size='350' frame='true' align='right' caption='''M. bovis'' HP A0A083VUK1' scene='72/728008/A0a083vuk1/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Hypothetical proline rich protein<br /> <br /> ==== Sequence ====<br /> MFTGIASHAGALGAALVVLIGAAILHDGPAAADPNQDDRFLALLEKKEIPAVANVPRVID<br /> <br /> AAHKVCRKLDGGMPVNDIVDGLRNDAYNIDPVMRLYPVRLTTTMTRFISAAVEIYCPNHH<br /> <br /> SKMAFAMANFEPGSNEPTHRVAASTRSAVNSGSDLRASVSDMTIMSPGWREPTGAMLASV<br /> <br /> LGAVRAGDPLIPNPPPIPVPPPAAQTLIPPPPIVAPPPPRPAPPQQPPPPPPEVEPPAGV<br /> <br /> PQSGGAAGSGGAGSGGGGGGDGPVEPSPARPMPPGFIRLAP<br /> <br /> ==== Length ====<br /> 281<br /> <br /> ==== Predicted Localization ====<br /> Outer Membrane<br /> <br /> ==== Putative Function ====<br /> Transcriptional activator<br /> <br /> ----<br /> <br /> == ''M. bovis'' HP A0A083W378 ==<br /> <br /> &lt;Structure load='A0A083W378.pdb' size='350' frame='true' align='right' caption='''M. bovis'' HP A0A083W378' scene='72/728008/A0a083w378/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Conserved hypothetical proline rich protein<br /> <br /> ==== Sequence ====<br /> MATGARPALGLSIGVTNLAAVAADHSITRKPVLTLYRQRPPEVGVPSENPRLDEPGLVIT<br /> <br /> DFVDRVGDSVGIVAADGSVYRSEALVADALLALAYTATGGRALPGSVTVTYPAHWGPAAV<br /> <br /> AALDSALRRASEWSHGTSSTAQPLSLLPDAAAALYAIRADPGIPARGIVAVCDFGGSGTG<br /> <br /> ITLVDAADEYRPVAATVRHQAFSGDLIDQSLLSYVMSELPGTGAFDPAGTSAIGSLTKLR<br /> <br /> IECRKAKERLSSSTVTTLTDALGGDIRLTRNELEDTIRDSLDSVGRALEQTLARSGIRTA<br /> <br /> ELVAIVSVGGGANIPAVTTTLSGRFCVPVVRTPRPQLTAAFGGALWAARRPGDTSATVLT<br /> <br /> AVTSATATAPADAPASVLQPALAWSEADEDSHIGPAPGYTAARPSLSFDHDAHAEPEPKS<br /> <br /> PPIPWYRLPAVIITGTTVAVLLVGAAVAIGLSTGDQPTAPGTPQRPGVTTTAAPPPSPAP<br /> <br /> ASDGPTTEPAPPVQAPATGGPAPPLQQPLPPPPTTTNTQPAVTTDVITPAPTTPASAPPA<br /> <br /> TTQPPATTQPPATTSPSPPPIPPIPPIPEIPQLPPGIPQVPGIGQFSAISGS<br /> <br /> ==== Length ====<br /> 592<br /> <br /> ==== Predicted Localization ====<br /> Outer Membrane<br /> <br /> ==== Putative Function ====<br /> Chaperone (DnaK-like)<br /> <br /> ----<br /> <br /> == ''M. bovis'' HP A0A0C7DM56 ==<br /> <br /> &lt;Structure load='A0A0C7DM56.pdb' size='350' frame='true' align='right' caption='''M. bovis'' HP A0A0C7DM56' scene='72/728008/A0a0c7dm56/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Alanine and arginine and proline rich protein<br /> <br /> ==== Sequence ====<br /> MMASNQTAAQHSSATLQQAPRSIDDAGGCPLTISPIANSPGDTFAVTPVVEYEPPPRNIP<br /> <br /> PCGQSSHAARRPHTPQLARRQPIRPSGRAPAAVTSTAKSPRLRQAGTFADAALRRVLEVI<br /> <br /> DRRRPVGQLRPLLAPGLVDSVLAVSRTAAGHQQGAAMLRRIRLTPAGPDTADTAAEVFGT<br /> <br /> YSRGDRIHAIACRVEQRPAGNETRWLMVALHIG<br /> <br /> ==== Length ====<br /> 213<br /> <br /> ==== Predicted Localization ====<br /> Outer Membrane<br /> <br /> ==== Putative Function ====<br /> Palmitoyl CoA hydrolase<br /> <br /> ----<br /> <br /> == ''M. bovis'' HP A0A0C7DHL0 ==<br /> <br /> &lt;Structure load='A0A0C7DHL0.pdb' size='350' frame='true' align='right' caption='''M. bovis'' HP A0A0C7DHL0' scene='72/728008/A0a0c7dhl0/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Conserved hypothetical alanine rich protein<br /> <br /> ==== Sequence ====<br /> MAEPLAVDPTGLSAAAAKLAGLVFPQPPAPIAVSGTDSVVAAINKTMPSIESLVSDGLPG<br /> <br /> VKAALTRTASNMNAAADVYAKTDQSLGTSLSQYAFGSSGEGLAGVASVGGQPSQATQLLS<br /> <br /> TPVSQVTTQLGETAAELAPRVVATVPQLVQLAPHAVQMSQNASPIAQTISQTAQQAAQSA<br /> <br /> QGGSGPMPAQLASAEKPATEQAEPVHEVTNDDQGDQGDVQPAEVVAAARDEGAGASPGQQ<br /> <br /> PGGGVPAQAMDTGAGARPAASPLAAPVDPSTPAPSTTTTL<br /> <br /> ==== Length ====<br /> 280<br /> <br /> ==== Predicted Localization ====<br /> Secreted<br /> <br /> ==== Putative Function ====<br /> ESX-1 secretion-associated protein EspB<br /> <br /> ----<br /> <br /> == ''M. bovis'' HP A0A083VPS0 ==<br /> <br /> &lt;Structure load='A0A083VPS0.pdb' size='350' frame='true' align='right' caption='''M. bovis'' HP A0A083VPS0' scene='72/728006/Mybo_hp_a0a083vps0/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Alanine and proline rich protein<br /> <br /> ==== Sequence ====<br /> MAPLAVDPAALDSAGGAVVAAGAGLGAVISSLTAALAGCAGMAGDDPAGAVFGRSYDGSA<br /> <br /> AALVQAMSVARNGLCNLGDGVRMSAHNYSLAEAMSDVAGRAAPLPAPPPSGCVGVGAPPS<br /> <br /> AVGGGGGAPKGWGWVAPYIGMIWPNGDSTKLRAAAVAWRSAGTQFALTEIQSTAGPMGVI<br /> <br /> RAQQLPEAGLIESAFADAYASTTAVVGQCHQLAAQLDAYAARIDAVHAAVLDLLARICDP<br /> <br /> LTGIKEVWEFLTDQDEDEIQRIAHDIAVVVDQFSGEVDALAAEITAVVSHAEAVITAMAD<br /> <br /> HAGKQWDRFLHSNPVGVVIDGTGQQLKGFGEEAFGMAKDSWDLGPLRASIDPFGWYRSWE<br /> <br /> EMLTGMAPLAGLGGENAPGVVESWKQFGKSLIHWDEWTTNPNEALGKTVFDAATLALPGG<br /> <br /> PLSKLGSKGRDILAGVRGLKERLEPTTPHLEPPATPPRPGPQPPRIEPPESGHPAPAPAA<br /> <br /> KPAPVPANGPLPHSPTESKPPPVDRPAEPVAPSSASAGQPRVSAATTPGTHVPHGLPQPG<br /> <br /> EHVPAQAPPATTLLGGPPVESAPATAHQPQWATTPAAPAAAPHSTPGGVHSTESGPHGRS<br /> <br /> LSAHGSEPTHDGASHGSGHGSGSEPPGLHAPHREQQLAMHSNEPAGEGWHRLSDEAVDPQ<br /> <br /> YGEPLSRHWDFTDNPADRSRINPVVAQLMEDPNAPFGRDPQGQPYTQERYQERFNSVGPW<br /> <br /> GQQYSNFPPNNGAVPGTRIAYTNLEKFLSDYGPQLDRIGGDQGKYLAIMEHGRPASWEQR<br /> <br /> ALHVTSLRDPYHAYTIDWLPEGWFIEVSEVAPGCGQPGGSIQVRIFDHQNEMRKVEELIR<br /> <br /> RGVLRQ<br /> <br /> ==== Length ====<br /> 846<br /> <br /> ==== Predicted Localization ====<br /> Secreted<br /> <br /> ==== Putative Function ====<br /> Tuberculosis necrotizing toxin<br /> <br /> ----</div>

Bhaskar Ganguly https://proteopedia.org/index.php?title=User:Bhaskar_Ganguly/MyBo_HyPo&diff=2586106 2016-04-10T13:14:56Z

<p>Bhaskar Ganguly: </p> <hr /> <div>'''The ''MyBo'' HyPo Project'''<br /> ----<br /> <br /> Welcome to the ''Mycobacterium bovis''' Hypothetical Protein (''MyBo'' HyPo) Project.<br /> <br /> The MyBo HyPo Project aims towards a computational characterization of all hypothetical proteins (HPs) of ''M. bovis''. As for now, computationally-derived models of 14 ''M. bovis'' HP UniRefs, obtained at a 90% sequence identity cut-off from the UniProt Database, are being included. These models shall be updated as and when models of better quality become available. We also plan to add models for other sequences over the coming periods of time.<br /> - ''Bhaskar Ganguly'', Ph.D.; ''Sunil Kr. Rastogi'', Ph.D.<br /> <br /> (Note: It may take a while for the models to load completely. Your web browser must be configured to run Java for visualization of the interactive protein models, or you may use the latest version of Google Chrome that has Java integrated in it. Right click on a model to download it and for access to more options. Left click and drag a model to rotate view.)<br /> <br /> <br /> == ''M. bovis'' HP A0A083W064 ==<br /> <br /> &lt;Structure load='A0A083W064.pdb' size='350' frame='true' align='right' caption='''M. bovis'' HP A0A083W064' scene='72/728008/A0a083w064/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Hypothetical arginine and alanine rich protein<br /> <br /> ==== Sequence ====<br /> MARQPLEQRVARAAQAALARQRFVSAIDVLLGLGWLAPSHVDQWRQGRVDSLEQVVQANL<br /> SKITAVMAALRRWARDRGLNPSETDYVARTRDRRRLRFSVTGEDAIERAYRTHWVSPELS<br /> ERAVARQSRRPDLVVIMPVNDWSCASCGGSGDLMFLEDAGPLCLDCADLGHLVFLPSGDA<br /> ALTRRAKRASRLSAVVVRWSRARKRYERQGILVEAEALERAENECLADAEVRARRRERDE<br /> ARRANEDLRLQAEFGAAIRTLFPNCPAGRAEAIARHAATRGSGRIGRSAAGRALDPEAVR<br /> LAVAASVRHIDTSFDELLMSGVDRETARHRVGEHVEEVLRDWRATSR<br /> <br /> ==== Length ====<br /> 347<br /> <br /> ==== Predicted Localization ====<br /> Cytoplasmic<br /> <br /> ==== Putative Function ====<br /> Arginine decarboxylase<br /> <br /> ----<br /> <br /> == ''M. bovis'' HP A0A083W0M1 ==<br /> <br /> &lt;Structure load='A0A083W0M1.pdb' size='350' frame='true' align='right' caption='''M. bovis'' HP A0A083W0M1' scene='72/728008/A0a083w0m1/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Conserved hypothetical alanine rich protein<br /> <br /> ==== Sequence ====<br /> MSTFRECRSMFDAAVKSYQSGDLANARAAFGRLTVENPDMSDGWLGLLACGDHHLDTLAG<br /> AHQHSEALYSETRRVGLTDGELSAVVMAPMYLGLRVWSRATIGLAYASALIIADRHDEAA<br /> ATLDDPVITEDTGAAQYRQFVMATLFHKTRSWSNLLKVTEISPPSGATDVRDEVADAVAA<br /> LASTAAASLGQFQFALELAEQVSTTNPRVTADVTLTRAWCLRELGDDDAARVALSATTTG<br /> DAPRTNTTAEQAGSPQPKFRHPYDDGRDLLVARRRPPAGDGWRKAVTKMTFGRVNPEPSA<br /> KREQTDELIQRICAPLADVHKLAFVSAKGGVGKTTMTVLVGNAVARLRGDRVMAVDVDAD<br /> LGDLSARFSERGGPQTNIEHFVSSQHTKRYADVRVHTVMNKDRLEMLGAQNDPRSTYKFG<br /> PEDYGAAMQILETHCNVILLDCGTPVNGPLFSNILNDVTGLVVVASEDVRGVEGALVTLD<br /> WLGAHGFGRLLQHTVVVLNAIQKTRSLVDCGAAENQFRKRVPDFFRIPYDPHLATGLAVD<br /> FSSLKRRTRNAVLDLAGGLAQHYPASRVRPRGEDSWKTWIETMRQVG<br /> <br /> ==== Length ====<br /> 587<br /> <br /> ==== Predicted Localization ====<br /> Cytoplasmic<br /> <br /> ==== Putative Function ====<br /> Cell Division Inhibitor MIND<br /> <br /> ----<br /> <br /> == ''M. bovis'' HP A0A0C7DGT6 ==<br /> <br /> &lt;Structure load='A0A0C7DGT6.pdb' size='350' frame='true' align='right' caption='''M. bovis'' HP A0A0C7DGT6' scene='72/728008/A0a0c7dgt6/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Conserved hypothetical alanine and proline rich protein<br /> <br /> ==== Sequence ====<br /> MADRLNVAERLAEGRPAAEHTQSYVRACHLVGYQHPDLTAYPAQIHDWYGSEDGLDLHAL<br /> DADCAQLRAAASVLMEALRMERSQVAVLAAAWTGSGADAAVHFVQRHCETGNSVVTEVRA<br /> AAQRCESLRDNLWQLVDSKVATAIAIDERALAQRPAWLAAAEALTTEGADRPTAVEVVRQ<br /> QIQPYVDDDVRNDWLTTMRSTTAGVAASYDAVTDQLASAPRAHFEIPDDLGPGRQPSPAS<br /> VPAQPSATAAITPAAALPPPDPVPAVTSRPVTPSDFGSAPGDGSATPAGVGSAGGFGDAG<br /> GTGGLGGFAGLAGLANRIVDAVDSLLGSVAEQLGDPLAADNPPGAVDPFAEDAADNADDG<br /> DDAHPEEAGEAAEPKEATEPDEADEVDDADESVPAERAQDVAEEATLPPVAEPPPPAAPP<br /> VAEPPPPVAAPAPPGAPEPANGPSPEALSEGATPCEIAADELPQAGP<br /> <br /> ==== Length ====<br /> 467<br /> <br /> ==== Predicted Localization ====<br /> Cytoplasmic<br /> <br /> ==== Putative Function ====<br /> Undetermined<br /> <br /> ----<br /> <br /> == ''M. bovis'' HP A0A083VPW0 ==<br /> <br /> &lt;Structure load='A0A083VPW0.pdb' size='350' frame='true' align='right' caption='''M. bovis'' HP A0A083VPW0' scene='72/728008/A0a083vpw0/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Conserved hypothetical alanine rich protein<br /> <br /> ==== Sequence ====<br /> MVAADLPPGRWSAVLVGAWWPAPSAALRAAAQHWATWAMQKQELARNLISQHDLLLRNQG<br /> RTAEDLIGRYLRGAKSEVTKAEKYEIKKGAFNTAADAIDYLRSRLTGIAGEGNKEIDDVL<br /> ASKKPLPEQLAEIQAIQTRCNADAANASRDAVDKVMTAMQEILEAEDIGDDPRTWARANG<br /> FNVDDAPPPRLIRENDLAALTGPGARGGSFGSVEGAGDLASPQSVGAGGFSGSGVQAACS<br /> QPAPRAIGASSRHASAGPVPPAPVVTTPAAATPPVIATGPRWRCPAGRCRRRPSDRAYRL<br /> RRLGNRLRPGW<br /> <br /> ==== Length ====<br /> 311<br /> <br /> ==== Predicted Localization ====<br /> Outer Membrane<br /> <br /> ==== Putative Function ====<br /> Rhamnosidase<br /> <br /> ----<br /> <br /> == ''M. bovis'' HP A0A083VTH6 ==<br /> <br /> &lt;Structure load='A0A083VTH6.pdb' size='350' frame='true' align='right' caption='''M. bovis'' HP A0A083VTH6' scene='72/728008/A0a083vth6/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Hypothetical alanine and valine rich protein<br /> <br /> ==== Sequence ====<br /> MSPHRAVIEAGPGAIRRLCCGADVVADTAVSAAALAAIDDQVALLDERPVAVDSLWFDAL<br /> RSVAVDHRDGPVVVHPSWWSAARVEVVTAAARTLTRDVVVHPRSWLLRQASSGVSAATVV<br /> VEIAERLVLVAGAEVAAVARRTDAESVAGQVGSVIARMTRGITAVVLIDVPSTVAGAAAL<br /> AAAIAGAVRGTGSSVVEIDGVRLARLARAALPPSDEPADPAARPATRSRVPTLARVAAAG<br /> VALALLAPAAVVRHGATTLQRPPTTLLVEGRVALTIPADWSTQRVVSGPGSARVQVTSPA<br /> DPEVALHVTQSPVPGETLPGTAQRLKRAIDASPAGVFVDFNPSDIRAGRPAVTYREVRAG<br /> HQVRWTILLDGAVRISVGCQSGPGHEDLLREVCAQAVRSVHAVG<br /> <br /> ==== Length ====<br /> 404<br /> <br /> ==== Predicted Localization ====<br /> Outer Membrane<br /> <br /> ==== Putative Function ====<br /> Photosystem II protein PsbP<br /> <br /> ----<br /> <br /> == ''M. bovis'' HP A0A083VUK1 ==<br /> <br /> &lt;Structure load='A0A083VUK1.pdb' size='350' frame='true' align='right' caption='''M. bovis'' HP A0A083VUK1' scene='72/728008/A0a083vuk1/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Hypothetical proline rich protein<br /> <br /> ==== Sequence ====<br /> MFTGIASHAGALGAALVVLIGAAILHDGPAAADPNQDDRFLALLEKKEIPAVANVPRVID<br /> AAHKVCRKLDGGMPVNDIVDGLRNDAYNIDPVMRLYPVRLTTTMTRFISAAVEIYCPNHH<br /> SKMAFAMANFEPGSNEPTHRVAASTRSAVNSGSDLRASVSDMTIMSPGWREPTGAMLASV<br /> LGAVRAGDPLIPNPPPIPVPPPAAQTLIPPPPIVAPPPPRPAPPQQPPPPPPEVEPPAGV<br /> PQSGGAAGSGGAGSGGGGGGDGPVEPSPARPMPPGFIRLAP<br /> <br /> ==== Length ====<br /> 281<br /> <br /> ==== Predicted Localization ====<br /> Outer Membrane<br /> <br /> ==== Putative Function ====<br /> Transcriptional activator<br /> <br /> ----<br /> <br /> == ''M. bovis'' HP A0A083W378 ==<br /> <br /> &lt;Structure load='A0A083W378.pdb' size='350' frame='true' align='right' caption='''M. bovis'' HP A0A083W378' scene='72/728008/A0a083w378/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Conserved hypothetical proline rich protein<br /> <br /> ==== Sequence ====<br /> MATGARPALGLSIGVTNLAAVAADHSITRKPVLTLYRQRPPEVGVPSENPRLDEPGLVIT<br /> DFVDRVGDSVGIVAADGSVYRSEALVADALLALAYTATGGRALPGSVTVTYPAHWGPAAV<br /> AALDSALRRASEWSHGTSSTAQPLSLLPDAAAALYAIRADPGIPARGIVAVCDFGGSGTG<br /> ITLVDAADEYRPVAATVRHQAFSGDLIDQSLLSYVMSELPGTGAFDPAGTSAIGSLTKLR<br /> IECRKAKERLSSSTVTTLTDALGGDIRLTRNELEDTIRDSLDSVGRALEQTLARSGIRTA<br /> ELVAIVSVGGGANIPAVTTTLSGRFCVPVVRTPRPQLTAAFGGALWAARRPGDTSATVLT<br /> AVTSATATAPADAPASVLQPALAWSEADEDSHIGPAPGYTAARPSLSFDHDAHAEPEPKS<br /> PPIPWYRLPAVIITGTTVAVLLVGAAVAIGLSTGDQPTAPGTPQRPGVTTTAAPPPSPAP<br /> ASDGPTTEPAPPVQAPATGGPAPPLQQPLPPPPTTTNTQPAVTTDVITPAPTTPASAPPA<br /> TTQPPATTQPPATTSPSPPPIPPIPPIPEIPQLPPGIPQVPGIGQFSAISGS<br /> <br /> ==== Length ====<br /> 592<br /> <br /> ==== Predicted Localization ====<br /> Outer Membrane<br /> <br /> ==== Putative Function ====<br /> Chaperone (DnaK-like)<br /> <br /> ----<br /> <br /> == ''M. bovis'' HP A0A0C7DM56 ==<br /> <br /> &lt;Structure load='A0A0C7DM56.pdb' size='350' frame='true' align='right' caption='''M. bovis'' HP A0A0C7DM56' scene='72/728008/A0a0c7dm56/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Alanine and arginine and proline rich protein<br /> <br /> ==== Sequence ====<br /> MMASNQTAAQHSSATLQQAPRSIDDAGGCPLTISPIANSPGDTFAVTPVVEYEPPPRNIP<br /> PCGQSSHAARRPHTPQLARRQPIRPSGRAPAAVTSTAKSPRLRQAGTFADAALRRVLEVI<br /> DRRRPVGQLRPLLAPGLVDSVLAVSRTAAGHQQGAAMLRRIRLTPAGPDTADTAAEVFGT<br /> YSRGDRIHAIACRVEQRPAGNETRWLMVALHIG<br /> <br /> ==== Length ====<br /> 213<br /> <br /> ==== Predicted Localization ====<br /> Outer Membrane<br /> <br /> ==== Putative Function ====<br /> Palmitoyl CoA hydrolase<br /> <br /> ----<br /> <br /> == ''M. bovis'' HP A0A0C7DHL0 ==<br /> <br /> &lt;Structure load='A0A0C7DHL0.pdb' size='350' frame='true' align='right' caption='''M. bovis'' HP A0A0C7DHL0' scene='72/728008/A0a0c7dhl0/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Conserved hypothetical alanine rich protein<br /> <br /> ==== Sequence ====<br /> MAEPLAVDPTGLSAAAAKLAGLVFPQPPAPIAVSGTDSVVAAINKTMPSIESLVSDGLPG<br /> VKAALTRTASNMNAAADVYAKTDQSLGTSLSQYAFGSSGEGLAGVASVGGQPSQATQLLS<br /> TPVSQVTTQLGETAAELAPRVVATVPQLVQLAPHAVQMSQNASPIAQTISQTAQQAAQSA<br /> QGGSGPMPAQLASAEKPATEQAEPVHEVTNDDQGDQGDVQPAEVVAAARDEGAGASPGQQ<br /> PGGGVPAQAMDTGAGARPAASPLAAPVDPSTPAPSTTTTL<br /> <br /> ==== Length ====<br /> 280<br /> <br /> ==== Predicted Localization ====<br /> Secreted<br /> <br /> ==== Putative Function ====<br /> ESX-1 secretion-associated protein EspB<br /> <br /> ----</div>

Bhaskar Ganguly https://proteopedia.org/index.php?title=User:Bhaskar_Ganguly/MyBo_HyPo&diff=2586105 2016-04-10T13:07:10Z

<p>Bhaskar Ganguly: </p> <hr /> <div>'''The ''MyBo'' HyPo Project'''<br /> ----<br /> <br /> Welcome to the ''Mycobacterium bovis''' Hypothetical Protein (''MyBo'' HyPo) Project.<br /> <br /> The MyBo HyPo Project aims towards a computational characterization of all hypothetical proteins (HPs) of ''M. bovis''. As for now, computationally-derived models of 14 ''M. bovis'' HP UniRefs, obtained at a 90% sequence identity cut-off from the UniProt Database, are being included. These models shall be updated as and when models of better quality become available. We also plan to add models for other sequences over the coming periods of time.<br /> - ''Bhaskar Ganguly'', Ph.D.; ''Sunil Kr. Rastogi'', Ph.D.<br /> <br /> (Note: It may take a while for the models to load completely. Your web browser must be configured to run Java for visualization of the interactive protein models, or you may use the latest version of Google Chrome that has Java integrated in it. Right click on a model to download it and for access to more options. Left click and drag a model to rotate view.)<br /> <br /> <br /> == ''M. bovis'' HP A0A083W064 ==<br /> <br /> &lt;Structure load='A0A083W064.pdb' size='350' frame='true' align='right' caption='''M. bovis'' HP A0A083W064' scene='72/728008/A0a083w064/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Hypothetical arginine and alanine rich protein<br /> <br /> ==== Sequence ====<br /> MARQPLEQRVARAAQAALARQRFVSAIDVLLGLGWLAPSHVDQWRQGRVDSLEQVVQANL<br /> SKITAVMAALRRWARDRGLNPSETDYVARTRDRRRLRFSVTGEDAIERAYRTHWVSPELS<br /> ERAVARQSRRPDLVVIMPVNDWSCASCGGSGDLMFLEDAGPLCLDCADLGHLVFLPSGDA<br /> ALTRRAKRASRLSAVVVRWSRARKRYERQGILVEAEALERAENECLADAEVRARRRERDE<br /> ARRANEDLRLQAEFGAAIRTLFPNCPAGRAEAIARHAATRGSGRIGRSAAGRALDPEAVR<br /> LAVAASVRHIDTSFDELLMSGVDRETARHRVGEHVEEVLRDWRATSR<br /> <br /> ==== Length ====<br /> 347<br /> <br /> ==== Predicted Localization ====<br /> Cytoplasmic<br /> <br /> ==== Putative Function ====<br /> Arginine decarboxylase<br /> <br /> ----<br /> <br /> == ''M. bovis'' HP A0A083W0M1 ==<br /> <br /> &lt;Structure load='A0A083W0M1.pdb' size='350' frame='true' align='right' caption='''M. bovis'' HP A0A083W0M1' scene='72/728008/A0a083w0m1/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Conserved hypothetical alanine rich protein<br /> <br /> ==== Sequence ====<br /> MSTFRECRSMFDAAVKSYQSGDLANARAAFGRLTVENPDMSDGWLGLLACGDHHLDTLAG<br /> AHQHSEALYSETRRVGLTDGELSAVVMAPMYLGLRVWSRATIGLAYASALIIADRHDEAA<br /> ATLDDPVITEDTGAAQYRQFVMATLFHKTRSWSNLLKVTEISPPSGATDVRDEVADAVAA<br /> LASTAAASLGQFQFALELAEQVSTTNPRVTADVTLTRAWCLRELGDDDAARVALSATTTG<br /> DAPRTNTTAEQAGSPQPKFRHPYDDGRDLLVARRRPPAGDGWRKAVTKMTFGRVNPEPSA<br /> KREQTDELIQRICAPLADVHKLAFVSAKGGVGKTTMTVLVGNAVARLRGDRVMAVDVDAD<br /> LGDLSARFSERGGPQTNIEHFVSSQHTKRYADVRVHTVMNKDRLEMLGAQNDPRSTYKFG<br /> PEDYGAAMQILETHCNVILLDCGTPVNGPLFSNILNDVTGLVVVASEDVRGVEGALVTLD<br /> WLGAHGFGRLLQHTVVVLNAIQKTRSLVDCGAAENQFRKRVPDFFRIPYDPHLATGLAVD<br /> FSSLKRRTRNAVLDLAGGLAQHYPASRVRPRGEDSWKTWIETMRQVG<br /> <br /> ==== Length ====<br /> 587<br /> <br /> ==== Predicted Localization ====<br /> Cytoplasmic<br /> <br /> ==== Putative Function ====<br /> Cell Division Inhibitor MIND<br /> <br /> ----<br /> <br /> == ''M. bovis'' HP A0A0C7DGT6 ==<br /> <br /> &lt;Structure load='A0A0C7DGT6.pdb' size='350' frame='true' align='right' caption='''M. bovis'' HP A0A0C7DGT6' scene='72/728008/A0a0c7dgt6/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Conserved hypothetical alanine and proline rich protein<br /> <br /> ==== Sequence ====<br /> MADRLNVAERLAEGRPAAEHTQSYVRACHLVGYQHPDLTAYPAQIHDWYGSEDGLDLHAL<br /> DADCAQLRAAASVLMEALRMERSQVAVLAAAWTGSGADAAVHFVQRHCETGNSVVTEVRA<br /> AAQRCESLRDNLWQLVDSKVATAIAIDERALAQRPAWLAAAEALTTEGADRPTAVEVVRQ<br /> QIQPYVDDDVRNDWLTTMRSTTAGVAASYDAVTDQLASAPRAHFEIPDDLGPGRQPSPAS<br /> VPAQPSATAAITPAAALPPPDPVPAVTSRPVTPSDFGSAPGDGSATPAGVGSAGGFGDAG<br /> GTGGLGGFAGLAGLANRIVDAVDSLLGSVAEQLGDPLAADNPPGAVDPFAEDAADNADDG<br /> DDAHPEEAGEAAEPKEATEPDEADEVDDADESVPAERAQDVAEEATLPPVAEPPPPAAPP<br /> VAEPPPPVAAPAPPGAPEPANGPSPEALSEGATPCEIAADELPQAGP<br /> <br /> ==== Length ====<br /> 467<br /> <br /> ==== Predicted Localization ====<br /> Cytoplasmic<br /> <br /> ==== Putative Function ====<br /> Undetermined<br /> <br /> ----<br /> <br /> == ''M. bovis'' HP A0A083VPW0 ==<br /> <br /> &lt;Structure load='A0A083VPW0.pdb' size='350' frame='true' align='right' caption='''M. bovis'' HP A0A083VPW0' scene='72/728008/A0a083vpw0/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Conserved hypothetical alanine rich protein<br /> <br /> ==== Sequence ====<br /> MVAADLPPGRWSAVLVGAWWPAPSAALRAAAQHWATWAMQKQELARNLISQHDLLLRNQG<br /> RTAEDLIGRYLRGAKSEVTKAEKYEIKKGAFNTAADAIDYLRSRLTGIAGEGNKEIDDVL<br /> ASKKPLPEQLAEIQAIQTRCNADAANASRDAVDKVMTAMQEILEAEDIGDDPRTWARANG<br /> FNVDDAPPPRLIRENDLAALTGPGARGGSFGSVEGAGDLASPQSVGAGGFSGSGVQAACS<br /> QPAPRAIGASSRHASAGPVPPAPVVTTPAAATPPVIATGPRWRCPAGRCRRRPSDRAYRL<br /> RRLGNRLRPGW<br /> <br /> ==== Length ====<br /> 311<br /> <br /> ==== Predicted Localization ====<br /> Outer Membrane<br /> <br /> ==== Putative Function ====<br /> Rhamnosidase<br /> <br /> ----<br /> <br /> == ''M. bovis'' HP A0A083VTH6 ==<br /> <br /> &lt;Structure load='A0A083VTH6.pdb' size='350' frame='true' align='right' caption='''M. bovis'' HP A0A083VTH6' scene='72/728008/A0a083vth6/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Hypothetical alanine and valine rich protein<br /> <br /> ==== Sequence ====<br /> MSPHRAVIEAGPGAIRRLCCGADVVADTAVSAAALAAIDDQVALLDERPVAVDSLWFDAL<br /> RSVAVDHRDGPVVVHPSWWSAARVEVVTAAARTLTRDVVVHPRSWLLRQASSGVSAATVV<br /> VEIAERLVLVAGAEVAAVARRTDAESVAGQVGSVIARMTRGITAVVLIDVPSTVAGAAAL<br /> AAAIAGAVRGTGSSVVEIDGVRLARLARAALPPSDEPADPAARPATRSRVPTLARVAAAG<br /> VALALLAPAAVVRHGATTLQRPPTTLLVEGRVALTIPADWSTQRVVSGPGSARVQVTSPA<br /> DPEVALHVTQSPVPGETLPGTAQRLKRAIDASPAGVFVDFNPSDIRAGRPAVTYREVRAG<br /> HQVRWTILLDGAVRISVGCQSGPGHEDLLREVCAQAVRSVHAVG<br /> <br /> ==== Length ====<br /> 404<br /> <br /> ==== Predicted Localization ====<br /> Outer Membrane<br /> <br /> ==== Putative Function ====<br /> Photosystem II protein PsbP<br /> <br /> ----<br /> <br /> == ''M. bovis'' HP A0A083VUK1 ==<br /> <br /> &lt;Structure load='A0A083VUK1.pdb' size='350' frame='true' align='right' caption='''M. bovis'' HP A0A083VUK1' scene='72/728008/A0a083vuk1/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Hypothetical proline rich protein<br /> <br /> ==== Sequence ====<br /> MFTGIASHAGALGAALVVLIGAAILHDGPAAADPNQDDRFLALLEKKEIPAVANVPRVID<br /> AAHKVCRKLDGGMPVNDIVDGLRNDAYNIDPVMRLYPVRLTTTMTRFISAAVEIYCPNHH<br /> SKMAFAMANFEPGSNEPTHRVAASTRSAVNSGSDLRASVSDMTIMSPGWREPTGAMLASV<br /> LGAVRAGDPLIPNPPPIPVPPPAAQTLIPPPPIVAPPPPRPAPPQQPPPPPPEVEPPAGV<br /> PQSGGAAGSGGAGSGGGGGGDGPVEPSPARPMPPGFIRLAP<br /> <br /> ==== Length ====<br /> 281<br /> <br /> ==== Predicted Localization ====<br /> Outer Membrane<br /> <br /> ==== Putative Function ====<br /> Transcriptional activator<br /> <br /> ----<br /> <br /> == ''M. bovis'' HP A0A083W378 ==<br /> <br /> &lt;Structure load='A0A083W378.pdb' size='350' frame='true' align='right' caption='''M. bovis'' HP A0A083W378' scene='72/728008/A0a083w378/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Conserved hypothetical proline rich protein<br /> <br /> ==== Sequence ====<br /> MATGARPALGLSIGVTNLAAVAADHSITRKPVLTLYRQRPPEVGVPSENPRLDEPGLVIT<br /> DFVDRVGDSVGIVAADGSVYRSEALVADALLALAYTATGGRALPGSVTVTYPAHWGPAAV<br /> AALDSALRRASEWSHGTSSTAQPLSLLPDAAAALYAIRADPGIPARGIVAVCDFGGSGTG<br /> ITLVDAADEYRPVAATVRHQAFSGDLIDQSLLSYVMSELPGTGAFDPAGTSAIGSLTKLR<br /> IECRKAKERLSSSTVTTLTDALGGDIRLTRNELEDTIRDSLDSVGRALEQTLARSGIRTA<br /> ELVAIVSVGGGANIPAVTTTLSGRFCVPVVRTPRPQLTAAFGGALWAARRPGDTSATVLT<br /> AVTSATATAPADAPASVLQPALAWSEADEDSHIGPAPGYTAARPSLSFDHDAHAEPEPKS<br /> PPIPWYRLPAVIITGTTVAVLLVGAAVAIGLSTGDQPTAPGTPQRPGVTTTAAPPPSPAP<br /> ASDGPTTEPAPPVQAPATGGPAPPLQQPLPPPPTTTNTQPAVTTDVITPAPTTPASAPPA<br /> TTQPPATTQPPATTSPSPPPIPPIPPIPEIPQLPPGIPQVPGIGQFSAISGS<br /> <br /> ==== Length ====<br /> 592<br /> <br /> ==== Predicted Localization ====<br /> Outer Membrane<br /> <br /> ==== Putative Function ====<br /> Chaperone (DnaK-like)<br /> <br /> ----<br /> <br /> == ''M. bovis'' HP A0A0C7DM56 ==<br /> <br /> &lt;Structure load='A0A0C7DM56.pdb' size='350' frame='true' align='right' caption='''M. bovis'' HP A0A0C7DM56' scene='72/728008/A0a0c7dm56/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Alanine and arginine and proline rich protein<br /> <br /> ==== Sequence ====<br /> MMASNQTAAQHSSATLQQAPRSIDDAGGCPLTISPIANSPGDTFAVTPVVEYEPPPRNIP<br /> PCGQSSHAARRPHTPQLARRQPIRPSGRAPAAVTSTAKSPRLRQAGTFADAALRRVLEVI<br /> DRRRPVGQLRPLLAPGLVDSVLAVSRTAAGHQQGAAMLRRIRLTPAGPDTADTAAEVFGT<br /> YSRGDRIHAIACRVEQRPAGNETRWLMVALHIG<br /> <br /> ==== Length ====<br /> 213<br /> <br /> ==== Predicted Localization ====<br /> Outer Membrane<br /> <br /> ==== Putative Function ====<br /> Palmitoyl CoA hydrolase<br /> <br /> ----</div>

Bhaskar Ganguly https://proteopedia.org/index.php?title=User:Bhaskar_Ganguly/MyBo_HyPo&diff=2586104 2016-04-10T12:55:49Z

<p>Bhaskar Ganguly: </p> <hr /> <div>'''The ''MyBo'' HyPo Project'''<br /> ----<br /> <br /> Welcome to the ''Mycobacterium bovis''' Hypothetical Protein (''MyBo'' HyPo) Project.<br /> <br /> The MyBo HyPo Project aims towards a computational characterization of all hypothetical proteins (HPs) of ''M. bovis''. As for now, computationally-derived models of 14 ''M. bovis'' HP UniRefs, obtained at a 90% sequence identity cut-off from the UniProt Database, are being included. These models shall be updated as and when models of better quality become available. We also plan to add models for other sequences over the coming periods of time.<br /> - ''Bhaskar Ganguly'', Ph.D.; ''Sunil Kr. Rastogi'', Ph.D.<br /> <br /> (Note: This page may take a while to load. Your web browser must be configured to run Java for visualization of the interactive protein models, or you may use the latest version of Google Chrome that has Java integrated in it. Right click on a model to download it and for access to more options. Left click and drag a model to rotate view.)<br /> <br /> <br /> == ''M. bovis'' HP A0A083W064 ==<br /> <br /> &lt;Structure load='A0A083W064.pdb' size='350' frame='true' align='right' caption='''M. bovis'' HP A0A083W064' scene='72/728008/A0a083w064/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Hypothetical arginine and alanine rich protein<br /> <br /> ==== Sequence ====<br /> MARQPLEQRVARAAQAALARQRFVSAIDVLLGLGWLAPSHVDQWRQGRVDSLEQVVQANL<br /> SKITAVMAALRRWARDRGLNPSETDYVARTRDRRRLRFSVTGEDAIERAYRTHWVSPELS<br /> ERAVARQSRRPDLVVIMPVNDWSCASCGGSGDLMFLEDAGPLCLDCADLGHLVFLPSGDA<br /> ALTRRAKRASRLSAVVVRWSRARKRYERQGILVEAEALERAENECLADAEVRARRRERDE<br /> ARRANEDLRLQAEFGAAIRTLFPNCPAGRAEAIARHAATRGSGRIGRSAAGRALDPEAVR<br /> LAVAASVRHIDTSFDELLMSGVDRETARHRVGEHVEEVLRDWRATSR<br /> <br /> ==== Length ====<br /> 347<br /> <br /> ==== Predicted Localization ====<br /> Cytoplasmic<br /> <br /> ==== Putative Function ====<br /> Arginine decarboxylase<br /> <br /> ----<br /> <br /> == ''M. bovis'' HP A0A083W0M1 ==<br /> <br /> &lt;Structure load='A0A083W0M1.pdb' size='350' frame='true' align='right' caption='''M. bovis'' HP A0A083W0M1' scene='72/728008/A0a083w0m1/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Conserved hypothetical alanine rich protein<br /> <br /> ==== Sequence ====<br /> MSTFRECRSMFDAAVKSYQSGDLANARAAFGRLTVENPDMSDGWLGLLACGDHHLDTLAG<br /> AHQHSEALYSETRRVGLTDGELSAVVMAPMYLGLRVWSRATIGLAYASALIIADRHDEAA<br /> ATLDDPVITEDTGAAQYRQFVMATLFHKTRSWSNLLKVTEISPPSGATDVRDEVADAVAA<br /> LASTAAASLGQFQFALELAEQVSTTNPRVTADVTLTRAWCLRELGDDDAARVALSATTTG<br /> DAPRTNTTAEQAGSPQPKFRHPYDDGRDLLVARRRPPAGDGWRKAVTKMTFGRVNPEPSA<br /> KREQTDELIQRICAPLADVHKLAFVSAKGGVGKTTMTVLVGNAVARLRGDRVMAVDVDAD<br /> LGDLSARFSERGGPQTNIEHFVSSQHTKRYADVRVHTVMNKDRLEMLGAQNDPRSTYKFG<br /> PEDYGAAMQILETHCNVILLDCGTPVNGPLFSNILNDVTGLVVVASEDVRGVEGALVTLD<br /> WLGAHGFGRLLQHTVVVLNAIQKTRSLVDCGAAENQFRKRVPDFFRIPYDPHLATGLAVD<br /> FSSLKRRTRNAVLDLAGGLAQHYPASRVRPRGEDSWKTWIETMRQVG<br /> <br /> ==== Length ====<br /> 587<br /> <br /> ==== Predicted Localization ====<br /> Cytoplasmic<br /> <br /> ==== Putative Function ====<br /> Cell Division Inhibitor MIND<br /> <br /> ----<br /> <br /> == ''M. bovis'' HP A0A0C7DGT6 ==<br /> <br /> &lt;Structure load='A0A0C7DGT6.pdb' size='350' frame='true' align='right' caption='''M. bovis'' HP A0A0C7DGT6' scene='72/728008/A0a0c7dgt6/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Conserved hypothetical alanine and proline rich protein<br /> <br /> ==== Sequence ====<br /> MADRLNVAERLAEGRPAAEHTQSYVRACHLVGYQHPDLTAYPAQIHDWYGSEDGLDLHAL<br /> DADCAQLRAAASVLMEALRMERSQVAVLAAAWTGSGADAAVHFVQRHCETGNSVVTEVRA<br /> AAQRCESLRDNLWQLVDSKVATAIAIDERALAQRPAWLAAAEALTTEGADRPTAVEVVRQ<br /> QIQPYVDDDVRNDWLTTMRSTTAGVAASYDAVTDQLASAPRAHFEIPDDLGPGRQPSPAS<br /> VPAQPSATAAITPAAALPPPDPVPAVTSRPVTPSDFGSAPGDGSATPAGVGSAGGFGDAG<br /> GTGGLGGFAGLAGLANRIVDAVDSLLGSVAEQLGDPLAADNPPGAVDPFAEDAADNADDG<br /> DDAHPEEAGEAAEPKEATEPDEADEVDDADESVPAERAQDVAEEATLPPVAEPPPPAAPP<br /> VAEPPPPVAAPAPPGAPEPANGPSPEALSEGATPCEIAADELPQAGP<br /> <br /> ==== Length ====<br /> 467<br /> <br /> ==== Predicted Localization ====<br /> Cytoplasmic<br /> <br /> ==== Putative Function ====<br /> Undetermined<br /> <br /> ----<br /> <br /> == ''M. bovis'' HP A0A083VPW0 ==<br /> <br /> &lt;Structure load='A0A083VPW0.pdb' size='350' frame='true' align='right' caption='''M. bovis'' HP A0A083VPW0' scene='72/728008/A0a083vpw0/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Conserved hypothetical alanine rich protein<br /> <br /> ==== Sequence ====<br /> MVAADLPPGRWSAVLVGAWWPAPSAALRAAAQHWATWAMQKQELARNLISQHDLLLRNQG<br /> RTAEDLIGRYLRGAKSEVTKAEKYEIKKGAFNTAADAIDYLRSRLTGIAGEGNKEIDDVL<br /> ASKKPLPEQLAEIQAIQTRCNADAANASRDAVDKVMTAMQEILEAEDIGDDPRTWARANG<br /> FNVDDAPPPRLIRENDLAALTGPGARGGSFGSVEGAGDLASPQSVGAGGFSGSGVQAACS<br /> QPAPRAIGASSRHASAGPVPPAPVVTTPAAATPPVIATGPRWRCPAGRCRRRPSDRAYRL<br /> RRLGNRLRPGW<br /> <br /> ==== Length ====<br /> 311<br /> <br /> ==== Predicted Localization ====<br /> Outer Membrane<br /> <br /> ==== Putative Function ====<br /> Rhamnosidase<br /> <br /> ----<br /> <br /> == ''M. bovis'' HP A0A083VTH6 ==<br /> <br /> &lt;Structure load='A0A083VTH6.pdb' size='350' frame='true' align='right' caption='''M. bovis'' HP A0A083VTH6' scene='72/728008/A0a083vth6/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Hypothetical alanine and valine rich protein<br /> <br /> ==== Sequence ====<br /> MSPHRAVIEAGPGAIRRLCCGADVVADTAVSAAALAAIDDQVALLDERPVAVDSLWFDAL<br /> RSVAVDHRDGPVVVHPSWWSAARVEVVTAAARTLTRDVVVHPRSWLLRQASSGVSAATVV<br /> VEIAERLVLVAGAEVAAVARRTDAESVAGQVGSVIARMTRGITAVVLIDVPSTVAGAAAL<br /> AAAIAGAVRGTGSSVVEIDGVRLARLARAALPPSDEPADPAARPATRSRVPTLARVAAAG<br /> VALALLAPAAVVRHGATTLQRPPTTLLVEGRVALTIPADWSTQRVVSGPGSARVQVTSPA<br /> DPEVALHVTQSPVPGETLPGTAQRLKRAIDASPAGVFVDFNPSDIRAGRPAVTYREVRAG<br /> HQVRWTILLDGAVRISVGCQSGPGHEDLLREVCAQAVRSVHAVG<br /> <br /> ==== Length ====<br /> 404<br /> <br /> ==== Predicted Localization ====<br /> Outer Membrane<br /> <br /> ==== Putative Function ====<br /> Photosystem II protein PsbP<br /> <br /> ----<br /> <br /> == ''M. bovis'' HP A0A083VUK1 ==<br /> <br /> &lt;Structure load='A0A083VUK1.pdb' size='350' frame='true' align='right' caption='''M. bovis'' HP A0A083VUK1' scene='72/728008/A0a083vuk1/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Hypothetical proline rich protein<br /> <br /> ==== Sequence ====<br /> MFTGIASHAGALGAALVVLIGAAILHDGPAAADPNQDDRFLALLEKKEIPAVANVPRVID<br /> AAHKVCRKLDGGMPVNDIVDGLRNDAYNIDPVMRLYPVRLTTTMTRFISAAVEIYCPNHH<br /> SKMAFAMANFEPGSNEPTHRVAASTRSAVNSGSDLRASVSDMTIMSPGWREPTGAMLASV<br /> LGAVRAGDPLIPNPPPIPVPPPAAQTLIPPPPIVAPPPPRPAPPQQPPPPPPEVEPPAGV<br /> PQSGGAAGSGGAGSGGGGGGDGPVEPSPARPMPPGFIRLAP<br /> <br /> ==== Length ====<br /> 281<br /> <br /> ==== Predicted Localization ====<br /> Outer Membrane<br /> <br /> ==== Putative Function ====<br /> Transcriptional activator<br /> <br /> ----<br /> <br /> == ''M. bovis'' HP A0A083W378 ==<br /> <br /> &lt;Structure load='A0A083W378.pdb' size='350' frame='true' align='right' caption='''M. bovis'' HP A0A083W378' scene='72/728008/A0a083w378/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Conserved hypothetical proline rich protein<br /> <br /> ==== Sequence ====<br /> MATGARPALGLSIGVTNLAAVAADHSITRKPVLTLYRQRPPEVGVPSENPRLDEPGLVIT<br /> DFVDRVGDSVGIVAADGSVYRSEALVADALLALAYTATGGRALPGSVTVTYPAHWGPAAV<br /> AALDSALRRASEWSHGTSSTAQPLSLLPDAAAALYAIRADPGIPARGIVAVCDFGGSGTG<br /> ITLVDAADEYRPVAATVRHQAFSGDLIDQSLLSYVMSELPGTGAFDPAGTSAIGSLTKLR<br /> IECRKAKERLSSSTVTTLTDALGGDIRLTRNELEDTIRDSLDSVGRALEQTLARSGIRTA<br /> ELVAIVSVGGGANIPAVTTTLSGRFCVPVVRTPRPQLTAAFGGALWAARRPGDTSATVLT<br /> AVTSATATAPADAPASVLQPALAWSEADEDSHIGPAPGYTAARPSLSFDHDAHAEPEPKS<br /> PPIPWYRLPAVIITGTTVAVLLVGAAVAIGLSTGDQPTAPGTPQRPGVTTTAAPPPSPAP<br /> ASDGPTTEPAPPVQAPATGGPAPPLQQPLPPPPTTTNTQPAVTTDVITPAPTTPASAPPA<br /> TTQPPATTQPPATTSPSPPPIPPIPPIPEIPQLPPGIPQVPGIGQFSAISGS<br /> <br /> ==== Length ====<br /> 592<br /> <br /> ==== Predicted Localization ====<br /> Outer Membrane<br /> <br /> ==== Putative Function ====<br /> Chaperone (DnaK-like)<br /> <br /> ----</div>

Bhaskar Ganguly https://proteopedia.org/index.php?title=User:Bhaskar_Ganguly/MyBo_HyPo&diff=2586103 2016-04-10T12:46:27Z

<p>Bhaskar Ganguly: </p> <hr /> <div>'''The ''MyBo'' HyPo Project'''<br /> ----<br /> <br /> Welcome to the ''Mycobacterium bovis''' Hypothetical Protein (''MyBo'' HyPo) Project.<br /> <br /> The MyBo HyPo Project aims a computational characterization of all hypothetical proteins (HPs) of ''M. bovis''. As for now, computationally-derived models of 14 ''M. bovis'' HP UniRefs, obtained at a 90% sequence identity cut-off from the UniProt Database, are being included. These models shall be updated as and when models of better quality become available. We also plan to add models for other sequences over the coming periods of time.<br /> - ''Bhaskar Ganguly'', Ph.D.; ''Sunil Kr. Rastogi'', Ph.D.<br /> <br /> (Note: This page may take a while to load. Your web browser must be configured to run Java for visualization of the interactive protein models, or you may use the latest version of Google Chrome that has Java integrated in it. Right click on a model to download it and for access to more options. Left click and drag a model to rotate view.)<br /> <br /> <br /> == ''M. bovis'' HP A0A083W064 ==<br /> <br /> &lt;Structure load='A0A083W064.pdb' size='350' frame='true' align='right' caption='''M. bovis'' HP A0A083W064' scene='72/728008/A0a083w064/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Hypothetical arginine and alanine rich protein<br /> <br /> ==== Sequence ====<br /> MARQPLEQRVARAAQAALARQRFVSAIDVLLGLGWLAPSHVDQWRQGRVDSLEQVVQANL<br /> SKITAVMAALRRWARDRGLNPSETDYVARTRDRRRLRFSVTGEDAIERAYRTHWVSPELS<br /> ERAVARQSRRPDLVVIMPVNDWSCASCGGSGDLMFLEDAGPLCLDCADLGHLVFLPSGDA<br /> ALTRRAKRASRLSAVVVRWSRARKRYERQGILVEAEALERAENECLADAEVRARRRERDE<br /> ARRANEDLRLQAEFGAAIRTLFPNCPAGRAEAIARHAATRGSGRIGRSAAGRALDPEAVR<br /> LAVAASVRHIDTSFDELLMSGVDRETARHRVGEHVEEVLRDWRATSR<br /> <br /> ==== Length ====<br /> 347<br /> <br /> ==== Predicted Localization ====<br /> Cytoplasmic<br /> <br /> ==== Putative Function ====<br /> Arginine decarboxylase<br /> <br /> ----<br /> <br /> == ''M. bovis'' HP A0A083W0M1 ==<br /> <br /> &lt;Structure load='A0A083W0M1.pdb' size='350' frame='true' align='right' caption='''M. bovis'' HP A0A083W0M1' scene='72/728008/A0a083w0m1/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Conserved hypothetical alanine rich protein<br /> <br /> ==== Sequence ====<br /> MSTFRECRSMFDAAVKSYQSGDLANARAAFGRLTVENPDMSDGWLGLLACGDHHLDTLAG<br /> AHQHSEALYSETRRVGLTDGELSAVVMAPMYLGLRVWSRATIGLAYASALIIADRHDEAA<br /> ATLDDPVITEDTGAAQYRQFVMATLFHKTRSWSNLLKVTEISPPSGATDVRDEVADAVAA<br /> LASTAAASLGQFQFALELAEQVSTTNPRVTADVTLTRAWCLRELGDDDAARVALSATTTG<br /> DAPRTNTTAEQAGSPQPKFRHPYDDGRDLLVARRRPPAGDGWRKAVTKMTFGRVNPEPSA<br /> KREQTDELIQRICAPLADVHKLAFVSAKGGVGKTTMTVLVGNAVARLRGDRVMAVDVDAD<br /> LGDLSARFSERGGPQTNIEHFVSSQHTKRYADVRVHTVMNKDRLEMLGAQNDPRSTYKFG<br /> PEDYGAAMQILETHCNVILLDCGTPVNGPLFSNILNDVTGLVVVASEDVRGVEGALVTLD<br /> WLGAHGFGRLLQHTVVVLNAIQKTRSLVDCGAAENQFRKRVPDFFRIPYDPHLATGLAVD<br /> FSSLKRRTRNAVLDLAGGLAQHYPASRVRPRGEDSWKTWIETMRQVG<br /> <br /> ==== Length ====<br /> 587<br /> <br /> ==== Predicted Localization ====<br /> Cytoplasmic<br /> <br /> ==== Putative Function ====<br /> Cell Division Inhibitor MIND<br /> <br /> ----<br /> <br /> == ''M. bovis'' HP A0A0C7DGT6 ==<br /> <br /> &lt;Structure load='A0A0C7DGT6.pdb' size='350' frame='true' align='right' caption='''M. bovis'' HP A0A0C7DGT6' scene='72/728008/A0a0c7dgt6/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Conserved hypothetical alanine and proline rich protein<br /> <br /> ==== Sequence ====<br /> MADRLNVAERLAEGRPAAEHTQSYVRACHLVGYQHPDLTAYPAQIHDWYGSEDGLDLHAL<br /> DADCAQLRAAASVLMEALRMERSQVAVLAAAWTGSGADAAVHFVQRHCETGNSVVTEVRA<br /> AAQRCESLRDNLWQLVDSKVATAIAIDERALAQRPAWLAAAEALTTEGADRPTAVEVVRQ<br /> QIQPYVDDDVRNDWLTTMRSTTAGVAASYDAVTDQLASAPRAHFEIPDDLGPGRQPSPAS<br /> VPAQPSATAAITPAAALPPPDPVPAVTSRPVTPSDFGSAPGDGSATPAGVGSAGGFGDAG<br /> GTGGLGGFAGLAGLANRIVDAVDSLLGSVAEQLGDPLAADNPPGAVDPFAEDAADNADDG<br /> DDAHPEEAGEAAEPKEATEPDEADEVDDADESVPAERAQDVAEEATLPPVAEPPPPAAPP<br /> VAEPPPPVAAPAPPGAPEPANGPSPEALSEGATPCEIAADELPQAGP<br /> <br /> ==== Length ====<br /> 467<br /> <br /> ==== Predicted Localization ====<br /> Cytoplasmic<br /> <br /> ==== Putative Function ====<br /> Undetermined<br /> <br /> ----<br /> <br /> == ''M. bovis'' HP A0A083VPW0 ==<br /> <br /> &lt;Structure load='A0A083VPW0.pdb' size='350' frame='true' align='right' caption='''M. bovis'' HP A0A083VPW0' scene='72/728008/A0a083vpw0/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Conserved hypothetical alanine rich protein<br /> <br /> ==== Sequence ====<br /> MVAADLPPGRWSAVLVGAWWPAPSAALRAAAQHWATWAMQKQELARNLISQHDLLLRNQG<br /> RTAEDLIGRYLRGAKSEVTKAEKYEIKKGAFNTAADAIDYLRSRLTGIAGEGNKEIDDVL<br /> ASKKPLPEQLAEIQAIQTRCNADAANASRDAVDKVMTAMQEILEAEDIGDDPRTWARANG<br /> FNVDDAPPPRLIRENDLAALTGPGARGGSFGSVEGAGDLASPQSVGAGGFSGSGVQAACS<br /> QPAPRAIGASSRHASAGPVPPAPVVTTPAAATPPVIATGPRWRCPAGRCRRRPSDRAYRL<br /> RRLGNRLRPGW<br /> <br /> ==== Length ====<br /> 311<br /> <br /> ==== Predicted Localization ====<br /> Outer Membrane<br /> <br /> ==== Putative Function ====<br /> Rhamnosidase<br /> <br /> ----<br /> <br /> == ''M. bovis'' HP A0A083VTH6 ==<br /> <br /> &lt;Structure load='A0A083VTH6.pdb' size='350' frame='true' align='right' caption='''M. bovis'' HP A0A083VTH6' scene='72/728008/A0a083vth6/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Hypothetical alanine and valine rich protein<br /> <br /> ==== Sequence ====<br /> MSPHRAVIEAGPGAIRRLCCGADVVADTAVSAAALAAIDDQVALLDERPVAVDSLWFDAL<br /> RSVAVDHRDGPVVVHPSWWSAARVEVVTAAARTLTRDVVVHPRSWLLRQASSGVSAATVV<br /> VEIAERLVLVAGAEVAAVARRTDAESVAGQVGSVIARMTRGITAVVLIDVPSTVAGAAAL<br /> AAAIAGAVRGTGSSVVEIDGVRLARLARAALPPSDEPADPAARPATRSRVPTLARVAAAG<br /> VALALLAPAAVVRHGATTLQRPPTTLLVEGRVALTIPADWSTQRVVSGPGSARVQVTSPA<br /> DPEVALHVTQSPVPGETLPGTAQRLKRAIDASPAGVFVDFNPSDIRAGRPAVTYREVRAG<br /> HQVRWTILLDGAVRISVGCQSGPGHEDLLREVCAQAVRSVHAVG<br /> <br /> ==== Length ====<br /> 404<br /> <br /> ==== Predicted Localization ====<br /> Outer Membrane<br /> <br /> ==== Putative Function ====<br /> Photosystem II protein PsbP<br /> <br /> ----<br /> <br /> == ''M. bovis'' HP A0A083VUK1 ==<br /> <br /> &lt;Structure load='A0A083VUK1.pdb' size='350' frame='true' align='right' caption='''M. bovis'' HP A0A083VUK1' scene='72/728008/A0a083vuk1/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Hypothetical proline rich protein<br /> <br /> ==== Sequence ====<br /> MFTGIASHAGALGAALVVLIGAAILHDGPAAADPNQDDRFLALLEKKEIPAVANVPRVID<br /> AAHKVCRKLDGGMPVNDIVDGLRNDAYNIDPVMRLYPVRLTTTMTRFISAAVEIYCPNHH<br /> SKMAFAMANFEPGSNEPTHRVAASTRSAVNSGSDLRASVSDMTIMSPGWREPTGAMLASV<br /> LGAVRAGDPLIPNPPPIPVPPPAAQTLIPPPPIVAPPPPRPAPPQQPPPPPPEVEPPAGV<br /> PQSGGAAGSGGAGSGGGGGGDGPVEPSPARPMPPGFIRLAP<br /> <br /> ==== Length ====<br /> 281<br /> <br /> ==== Predicted Localization ====<br /> Outer Membrane<br /> <br /> ==== Putative Function ====<br /> Transcriptional activator<br /> <br /> ----</div>

Bhaskar Ganguly https://proteopedia.org/index.php?title=User:Bhaskar_Ganguly/MyBo_HyPo&diff=2586101 2016-04-10T12:29:54Z

<p>Bhaskar Ganguly: </p> <hr /> <div>'''The ''MyBo'' HyPo Project'''<br /> ----<br /> <br /> Welcome to the ''Mycobacterium bovis''' Hypothetical Protein (''MyBo'' HyPo) Project.<br /> <br /> The MyBo HyPo Project aims a computational characterization of all hypothetical proteins (HPs) of ''M. bovis''. As for now, computationally-derived models of 14 ''M. bovis'' HP UniRefs, obtained at a 90% sequence identity cut-off from the UniProt Database, are being included. These models shall be updated as and when models of better quality become available. We also plan to add models for other sequences over the coming periods of time.<br /> - ''Bhaskar Ganguly'', Ph.D.; ''Sunil Kr. Rastogi'', Ph.D.<br /> <br /> (Note: This page may take a while to load. Your web browser must be configured to run Java for visualization of the interactive protein models or you may use the latest version of Google Chrome that has Java integrated in it. Right click on a model to download it and for access to more options. Left click and drag a model to rotate view.)<br /> <br /> <br /> == ''M. bovis'' HP A0A083W064 ==<br /> <br /> &lt;Structure load='A0A083W064.pdb' size='350' frame='true' align='right' caption='''M. bovis'' HP A0A083W064' scene='72/728008/A0a083w064/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Hypothetical arginine and alanine rich protein<br /> <br /> ==== Sequence ====<br /> MARQPLEQRVARAAQAALARQRFVSAIDVLLGLGWLAPSHVDQWRQGRVDSLEQVVQANL<br /> SKITAVMAALRRWARDRGLNPSETDYVARTRDRRRLRFSVTGEDAIERAYRTHWVSPELS<br /> ERAVARQSRRPDLVVIMPVNDWSCASCGGSGDLMFLEDAGPLCLDCADLGHLVFLPSGDA<br /> ALTRRAKRASRLSAVVVRWSRARKRYERQGILVEAEALERAENECLADAEVRARRRERDE<br /> ARRANEDLRLQAEFGAAIRTLFPNCPAGRAEAIARHAATRGSGRIGRSAAGRALDPEAVR<br /> LAVAASVRHIDTSFDELLMSGVDRETARHRVGEHVEEVLRDWRATSR<br /> <br /> ==== Length ====<br /> 347<br /> <br /> ==== Predicted Localization ====<br /> Cytoplasmic<br /> <br /> ==== Putative Function ====<br /> Arginine decarboxylase<br /> <br /> ----<br /> <br /> == ''M. bovis'' HP A0A083W0M1 ==<br /> <br /> &lt;Structure load='A0A083W0M1.pdb' size='350' frame='true' align='right' caption='''M. bovis'' HP A0A083W0M1' scene='72/728008/A0a083w0m1/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Conserved hypothetical alanine rich protein<br /> <br /> ==== Sequence ====<br /> MSTFRECRSMFDAAVKSYQSGDLANARAAFGRLTVENPDMSDGWLGLLACGDHHLDTLAG<br /> AHQHSEALYSETRRVGLTDGELSAVVMAPMYLGLRVWSRATIGLAYASALIIADRHDEAA<br /> ATLDDPVITEDTGAAQYRQFVMATLFHKTRSWSNLLKVTEISPPSGATDVRDEVADAVAA<br /> LASTAAASLGQFQFALELAEQVSTTNPRVTADVTLTRAWCLRELGDDDAARVALSATTTG<br /> DAPRTNTTAEQAGSPQPKFRHPYDDGRDLLVARRRPPAGDGWRKAVTKMTFGRVNPEPSA<br /> KREQTDELIQRICAPLADVHKLAFVSAKGGVGKTTMTVLVGNAVARLRGDRVMAVDVDAD<br /> LGDLSARFSERGGPQTNIEHFVSSQHTKRYADVRVHTVMNKDRLEMLGAQNDPRSTYKFG<br /> PEDYGAAMQILETHCNVILLDCGTPVNGPLFSNILNDVTGLVVVASEDVRGVEGALVTLD<br /> WLGAHGFGRLLQHTVVVLNAIQKTRSLVDCGAAENQFRKRVPDFFRIPYDPHLATGLAVD<br /> FSSLKRRTRNAVLDLAGGLAQHYPASRVRPRGEDSWKTWIETMRQVG<br /> <br /> ==== Length ====<br /> 587<br /> <br /> ==== Predicted Localization ====<br /> Cytoplasmic<br /> <br /> ==== Putative Function ====<br /> Cell Division Inhibitor MIND<br /> <br /> ----<br /> <br /> == ''M. bovis'' HP A0A0C7DGT6 ==<br /> <br /> &lt;Structure load='A0A0C7DGT6.pdb' size='350' frame='true' align='right' caption='''M. bovis'' HP A0A0C7DGT6' scene='72/728008/A0a0c7dgt6/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Conserved hypothetical alanine and proline rich protein<br /> <br /> ==== Sequence ====<br /> MADRLNVAERLAEGRPAAEHTQSYVRACHLVGYQHPDLTAYPAQIHDWYGSEDGLDLHAL<br /> DADCAQLRAAASVLMEALRMERSQVAVLAAAWTGSGADAAVHFVQRHCETGNSVVTEVRA<br /> AAQRCESLRDNLWQLVDSKVATAIAIDERALAQRPAWLAAAEALTTEGADRPTAVEVVRQ<br /> QIQPYVDDDVRNDWLTTMRSTTAGVAASYDAVTDQLASAPRAHFEIPDDLGPGRQPSPAS<br /> VPAQPSATAAITPAAALPPPDPVPAVTSRPVTPSDFGSAPGDGSATPAGVGSAGGFGDAG<br /> GTGGLGGFAGLAGLANRIVDAVDSLLGSVAEQLGDPLAADNPPGAVDPFAEDAADNADDG<br /> DDAHPEEAGEAAEPKEATEPDEADEVDDADESVPAERAQDVAEEATLPPVAEPPPPAAPP<br /> VAEPPPPVAAPAPPGAPEPANGPSPEALSEGATPCEIAADELPQAGP<br /> <br /> ==== Length ====<br /> 467<br /> <br /> ==== Predicted Localization ====<br /> Cytoplasmic<br /> <br /> ==== Putative Function ====<br /> Undetermined<br /> <br /> ----<br /> <br /> == ''M. bovis'' HP A0A083VPW0 ==<br /> <br /> &lt;Structure load='A0A083VPW0.pdb' size='350' frame='true' align='right' caption='''M. bovis'' HP A0A083VPW0' scene='72/728008/A0a083vpw0/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Conserved hypothetical alanine rich protein<br /> <br /> ==== Sequence ====<br /> MVAADLPPGRWSAVLVGAWWPAPSAALRAAAQHWATWAMQKQELARNLISQHDLLLRNQG<br /> RTAEDLIGRYLRGAKSEVTKAEKYEIKKGAFNTAADAIDYLRSRLTGIAGEGNKEIDDVL<br /> ASKKPLPEQLAEIQAIQTRCNADAANASRDAVDKVMTAMQEILEAEDIGDDPRTWARANG<br /> FNVDDAPPPRLIRENDLAALTGPGARGGSFGSVEGAGDLASPQSVGAGGFSGSGVQAACS<br /> QPAPRAIGASSRHASAGPVPPAPVVTTPAAATPPVIATGPRWRCPAGRCRRRPSDRAYRL<br /> RRLGNRLRPGW<br /> <br /> ==== Length ====<br /> 311<br /> <br /> ==== Predicted Localization ====<br /> Outer Membrane<br /> <br /> ==== Putative Function ====<br /> Rhamnosidase<br /> <br /> ----<br /> <br /> == ''M. bovis'' HP A0A083VTH6 ==<br /> <br /> &lt;Structure load='A0A083VTH6.pdb' size='350' frame='true' align='right' caption='''M. bovis'' HP A0A083VTH6' scene='72/728008/A0a083vth6/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Hypothetical alanine and valine rich protein<br /> <br /> ==== Sequence ====<br /> MSPHRAVIEAGPGAIRRLCCGADVVADTAVSAAALAAIDDQVALLDERPVAVDSLWFDAL<br /> RSVAVDHRDGPVVVHPSWWSAARVEVVTAAARTLTRDVVVHPRSWLLRQASSGVSAATVV<br /> VEIAERLVLVAGAEVAAVARRTDAESVAGQVGSVIARMTRGITAVVLIDVPSTVAGAAAL<br /> AAAIAGAVRGTGSSVVEIDGVRLARLARAALPPSDEPADPAARPATRSRVPTLARVAAAG<br /> VALALLAPAAVVRHGATTLQRPPTTLLVEGRVALTIPADWSTQRVVSGPGSARVQVTSPA<br /> DPEVALHVTQSPVPGETLPGTAQRLKRAIDASPAGVFVDFNPSDIRAGRPAVTYREVRAG<br /> HQVRWTILLDGAVRISVGCQSGPGHEDLLREVCAQAVRSVHAVG<br /> <br /> ==== Length ====<br /> 404<br /> <br /> ==== Predicted Localization ====<br /> Outer Membrane<br /> <br /> ==== Putative Function ====<br /> Photosystem II protein PsbP<br /> <br /> ----</div>

Bhaskar Ganguly https://proteopedia.org/index.php?title=User:Bhaskar_Ganguly/MyBo_HyPo&diff=2586097 2016-04-10T12:21:09Z

<p>Bhaskar Ganguly: </p> <hr /> <div>'''The ''MyBo'' HyPo Project'''<br /> ----<br /> <br /> Welcome to the ''Mycobacterium bovis''' Hypothetical Protein (''MyBo'' HyPo) Project.<br /> <br /> The MyBo HyPo Project aims a computational characterization of all hypothetical proteins (HPs) of ''M. bovis''. As for now, computationally-derived models of 14 ''M. bovis'' HP UniRefs, obtained at a 90% sequence identity cut-off from the UniProt Database, are being included. These models shall be updated as and when models of better quality become available. We also plan to add models for other sequences over the coming periods of time.<br /> - ''Bhaskar Ganguly'', Ph.D.; ''Sunil Kr. Rastogi'', Ph.D.<br /> <br /> Note: The page may take a while to load. Your web browser must be configured to run Java for visualization of the interactive protein models or you may use Google Chrome that has Java integrated in it. Right click on a model to download it and for access to more options. Left click and drag a model to rotate view.<br /> <br /> <br /> == ''M. bovis'' HP A0A083W064 ==<br /> <br /> &lt;Structure load='A0A083W064.pdb' size='350' frame='true' align='right' caption='''M. bovis'' HP A0A083W064' scene='72/728008/A0a083w064/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Hypothetical arginine and alanine rich protein<br /> <br /> ==== Sequence ====<br /> MARQPLEQRVARAAQAALARQRFVSAIDVLLGLGWLAPSHVDQWRQGRVDSLEQVVQANL<br /> SKITAVMAALRRWARDRGLNPSETDYVARTRDRRRLRFSVTGEDAIERAYRTHWVSPELS<br /> ERAVARQSRRPDLVVIMPVNDWSCASCGGSGDLMFLEDAGPLCLDCADLGHLVFLPSGDA<br /> ALTRRAKRASRLSAVVVRWSRARKRYERQGILVEAEALERAENECLADAEVRARRRERDE<br /> ARRANEDLRLQAEFGAAIRTLFPNCPAGRAEAIARHAATRGSGRIGRSAAGRALDPEAVR<br /> LAVAASVRHIDTSFDELLMSGVDRETARHRVGEHVEEVLRDWRATSR<br /> <br /> ==== Length ====<br /> 347<br /> <br /> ==== Predicted Localization ====<br /> Cytoplasmic<br /> <br /> ==== Putative Function ====<br /> Arginine decarboxylase<br /> <br /> ----<br /> <br /> == ''M. bovis'' HP A0A083W0M1 ==<br /> <br /> &lt;Structure load='A0A083W0M1.pdb' size='350' frame='true' align='right' caption='''M. bovis'' HP A0A083W0M1' scene='72/728008/A0a083w0m1/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Conserved hypothetical alanine rich protein<br /> <br /> ==== Sequence ====<br /> MSTFRECRSMFDAAVKSYQSGDLANARAAFGRLTVENPDMSDGWLGLLACGDHHLDTLAG<br /> AHQHSEALYSETRRVGLTDGELSAVVMAPMYLGLRVWSRATIGLAYASALIIADRHDEAA<br /> ATLDDPVITEDTGAAQYRQFVMATLFHKTRSWSNLLKVTEISPPSGATDVRDEVADAVAA<br /> LASTAAASLGQFQFALELAEQVSTTNPRVTADVTLTRAWCLRELGDDDAARVALSATTTG<br /> DAPRTNTTAEQAGSPQPKFRHPYDDGRDLLVARRRPPAGDGWRKAVTKMTFGRVNPEPSA<br /> KREQTDELIQRICAPLADVHKLAFVSAKGGVGKTTMTVLVGNAVARLRGDRVMAVDVDAD<br /> LGDLSARFSERGGPQTNIEHFVSSQHTKRYADVRVHTVMNKDRLEMLGAQNDPRSTYKFG<br /> PEDYGAAMQILETHCNVILLDCGTPVNGPLFSNILNDVTGLVVVASEDVRGVEGALVTLD<br /> WLGAHGFGRLLQHTVVVLNAIQKTRSLVDCGAAENQFRKRVPDFFRIPYDPHLATGLAVD<br /> FSSLKRRTRNAVLDLAGGLAQHYPASRVRPRGEDSWKTWIETMRQVG<br /> <br /> ==== Length ====<br /> 587<br /> <br /> ==== Predicted Localization ====<br /> Cytoplasmic<br /> <br /> ==== Putative Function ====<br /> Cell Division Inhibitor MIND<br /> <br /> ----<br /> <br /> == ''M. bovis'' HP A0A0C7DGT6 ==<br /> <br /> &lt;Structure load='A0A0C7DGT6.pdb' size='350' frame='true' align='right' caption='''M. bovis'' HP A0A0C7DGT6' scene='72/728008/A0a0c7dgt6/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Conserved hypothetical alanine and proline rich protein<br /> <br /> ==== Sequence ====<br /> MADRLNVAERLAEGRPAAEHTQSYVRACHLVGYQHPDLTAYPAQIHDWYGSEDGLDLHAL<br /> DADCAQLRAAASVLMEALRMERSQVAVLAAAWTGSGADAAVHFVQRHCETGNSVVTEVRA<br /> AAQRCESLRDNLWQLVDSKVATAIAIDERALAQRPAWLAAAEALTTEGADRPTAVEVVRQ<br /> QIQPYVDDDVRNDWLTTMRSTTAGVAASYDAVTDQLASAPRAHFEIPDDLGPGRQPSPAS<br /> VPAQPSATAAITPAAALPPPDPVPAVTSRPVTPSDFGSAPGDGSATPAGVGSAGGFGDAG<br /> GTGGLGGFAGLAGLANRIVDAVDSLLGSVAEQLGDPLAADNPPGAVDPFAEDAADNADDG<br /> DDAHPEEAGEAAEPKEATEPDEADEVDDADESVPAERAQDVAEEATLPPVAEPPPPAAPP<br /> VAEPPPPVAAPAPPGAPEPANGPSPEALSEGATPCEIAADELPQAGP<br /> <br /> ==== Length ====<br /> 467<br /> <br /> ==== Predicted Localization ====<br /> Cytoplasmic<br /> <br /> ==== Putative Function ====<br /> Undetermined<br /> <br /> ----<br /> <br /> == ''M. bovis'' HP A0A083VPW0 ==<br /> <br /> &lt;Structure load='A0A083VPW0.pdb' size='350' frame='true' align='right' caption='''M. bovis'' HP A0A083VPW0' scene='72/728008/A0a083vpw0/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Conserved hypothetical alanine rich protein<br /> <br /> ==== Sequence ====<br /> MVAADLPPGRWSAVLVGAWWPAPSAALRAAAQHWATWAMQKQELARNLISQHDLLLRNQG<br /> RTAEDLIGRYLRGAKSEVTKAEKYEIKKGAFNTAADAIDYLRSRLTGIAGEGNKEIDDVL<br /> ASKKPLPEQLAEIQAIQTRCNADAANASRDAVDKVMTAMQEILEAEDIGDDPRTWARANG<br /> FNVDDAPPPRLIRENDLAALTGPGARGGSFGSVEGAGDLASPQSVGAGGFSGSGVQAACS<br /> QPAPRAIGASSRHASAGPVPPAPVVTTPAAATPPVIATGPRWRCPAGRCRRRPSDRAYRL<br /> RRLGNRLRPGW<br /> <br /> ==== Length ====<br /> 311<br /> <br /> ==== Predicted Localization ====<br /> Outer Membrane<br /> <br /> ==== Putative Function ====<br /> Rhamnosidase<br /> <br /> ----</div>

Bhaskar Ganguly https://proteopedia.org/index.php?title=User:Bhaskar_Ganguly/MyBo_HyPo&diff=2586096 2016-04-10T12:13:51Z

<p>Bhaskar Ganguly: </p> <hr /> <div>'''The ''MyBo'' HyPo Database'''<br /> ----<br /> <br /> Welcome to the ''Mycobacterium bovis''' Hypothetical Protein (''MyBo'' HyPo) Project.<br /> <br /> The MyBo HyPo Project aims a computational characterization of all hypothetical proteins (HPs) of ''M. bovis''. As for now, computationally-derived models of 14 ''M. bovis'' HP UniRefs, obtained at a 90% sequence identity cut-off from the UniProt Database, are being included. These models shall be updated as and when models of better quality become available. We also plan to add models for other sequences over the coming periods of time.<br /> - ''Bhaskar Ganguly'', Ph.D.; ''Sunil Kr. Rastogi'', Ph.D.<br /> <br /> Note: The page may take a while to load. Your web browser must be configured to run Java for visualization of the interactive protein models or you may use Google Chrome that has Java integrated in it. Right click on a model to download it and for access to more options. Left click and drag a model to rotate view.<br /> <br /> <br /> == ''M. bovis'' HP A0A083W064 ==<br /> <br /> &lt;Structure load='A0A083W064.pdb' size='350' frame='true' align='right' caption='''M. bovis'' HP A0A083W064' scene='72/728008/A0a083w064/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Hypothetical arginine and alanine rich protein<br /> <br /> ==== Sequence ====<br /> MARQPLEQRVARAAQAALARQRFVSAIDVLLGLGWLAPSHVDQWRQGRVDSLEQVVQANL<br /> SKITAVMAALRRWARDRGLNPSETDYVARTRDRRRLRFSVTGEDAIERAYRTHWVSPELS<br /> ERAVARQSRRPDLVVIMPVNDWSCASCGGSGDLMFLEDAGPLCLDCADLGHLVFLPSGDA<br /> ALTRRAKRASRLSAVVVRWSRARKRYERQGILVEAEALERAENECLADAEVRARRRERDE<br /> ARRANEDLRLQAEFGAAIRTLFPNCPAGRAEAIARHAATRGSGRIGRSAAGRALDPEAVR<br /> LAVAASVRHIDTSFDELLMSGVDRETARHRVGEHVEEVLRDWRATSR<br /> <br /> ==== Length ====<br /> 347<br /> <br /> ==== Localization ====<br /> Cytoplasmic<br /> <br /> ==== Putative Function ====<br /> Arginine decarboxylase<br /> <br /> ----<br /> <br /> == ''M. bovis'' HP A0A083W0M1 ==<br /> <br /> &lt;Structure load='A0A083W0M1.pdb' size='350' frame='true' align='right' caption='''M. bovis'' HP A0A083W0M1' scene='72/728008/A0a083w0m1/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Conserved hypothetical alanine rich protein<br /> <br /> ==== Sequence ====<br /> MSTFRECRSMFDAAVKSYQSGDLANARAAFGRLTVENPDMSDGWLGLLACGDHHLDTLAG<br /> AHQHSEALYSETRRVGLTDGELSAVVMAPMYLGLRVWSRATIGLAYASALIIADRHDEAA<br /> ATLDDPVITEDTGAAQYRQFVMATLFHKTRSWSNLLKVTEISPPSGATDVRDEVADAVAA<br /> LASTAAASLGQFQFALELAEQVSTTNPRVTADVTLTRAWCLRELGDDDAARVALSATTTG<br /> DAPRTNTTAEQAGSPQPKFRHPYDDGRDLLVARRRPPAGDGWRKAVTKMTFGRVNPEPSA<br /> KREQTDELIQRICAPLADVHKLAFVSAKGGVGKTTMTVLVGNAVARLRGDRVMAVDVDAD<br /> LGDLSARFSERGGPQTNIEHFVSSQHTKRYADVRVHTVMNKDRLEMLGAQNDPRSTYKFG<br /> PEDYGAAMQILETHCNVILLDCGTPVNGPLFSNILNDVTGLVVVASEDVRGVEGALVTLD<br /> WLGAHGFGRLLQHTVVVLNAIQKTRSLVDCGAAENQFRKRVPDFFRIPYDPHLATGLAVD<br /> FSSLKRRTRNAVLDLAGGLAQHYPASRVRPRGEDSWKTWIETMRQVG<br /> <br /> ==== Length ====<br /> 587<br /> <br /> ==== Localization ====<br /> Cytoplasmic<br /> <br /> ==== Putative Function ====<br /> Cell Division Inhibitor MIND<br /> <br /> ----<br /> <br /> == ''M. bovis'' HP A0A0C7DGT6 ==<br /> <br /> &lt;Structure load='A0A0C7DGT6.pdb' size='350' frame='true' align='right' caption='''M. bovis'' HP A0A0C7DGT6' scene='72/728008/A0a0c7dgt6/1' /&gt;<br /> <br /> ==== UniProt Description ====<br /> Conserved hypothetical alanine and proline rich protein<br /> <br /> ==== Sequence ====<br /> MADRLNVAERLAEGRPAAEHTQSYVRACHLVGYQHPDLTAYPAQIHDWYGSEDGLDLHAL<br /> DADCAQLRAAASVLMEALRMERSQVAVLAAAWTGSGADAAVHFVQRHCETGNSVVTEVRA<br /> AAQRCESLRDNLWQLVDSKVATAIAIDERALAQRPAWLAAAEALTTEGADRPTAVEVVRQ<br /> QIQPYVDDDVRNDWLTTMRSTTAGVAASYDAVTDQLASAPRAHFEIPDDLGPGRQPSPAS<br /> VPAQPSATAAITPAAALPPPDPVPAVTSRPVTPSDFGSAPGDGSATPAGVGSAGGFGDAG<br /> GTGGLGGFAGLAGLANRIVDAVDSLLGSVAEQLGDPLAADNPPGAVDPFAEDAADNADDG<br /> DDAHPEEAGEAAEPKEATEPDEADEVDDADESVPAERAQDVAEEATLPPVAEPPPPAAPP<br /> VAEPPPPVAAPAPPGAPEPANGPSPEALSEGATPCEIAADELPQAGP<br /> <br /> ==== Length ====<br /> 467<br /> <br /> ==== Localization ====<br /> Cytoplasmic<br /> <br /> ==== Putative Function ====<br /> Undetermined<br /> <br /> ----</div>

Bhaskar Ganguly https://proteopedia.org/index.php?title=User:Bhaskar_Ganguly/MyBo_HyPo&diff=2586094 2016-04-10T11:58:29Z

<p>Bhaskar Ganguly: </p> <hr /> <div>'''The ''MyBo'' HyPo Database'''<br /> ----<br /> <br /> Welcome to the ''Mycobacterium bovis''' Hypothetical Protein (''MyBo'' HyPo) Project.<br /> <br /> The MyBo HyPo Project aims a computational characterization of all hypothetical proteins (HPs) of ''M. bovis''. As for now, computationally-derived models of 14 ''M. bovis'' HP UniRefs, obtained at a 90% sequence identity cut-off from the UniProt Database, are being included. These models shall be updated as and when models of better quality become available. We also plan to add models for other sequences over the coming periods of time.<br /> - ''Bhaskar Ganguly'', Ph.D.; ''Sunil Kr. Rastogi'', Ph.D.<br /> <br /> <br /> == ''M. bovis'' HP A0A083W064 ==<br /> <br /> &lt;Structure load='A0A083W064.pdb' size='350' frame='true' align='right' caption='''M. bovis'' HP A0A083W064' scene='72/728008/A0a083w064/1' /&gt;<br /> <br /> ==== UniProt Name ====<br /> Hypothetical arginine and alanine rich protein<br /> <br /> ==== Sequence ====<br /> MARQPLEQRVARAAQAALARQRFVSAIDVLLGLGWLAPSHVDQWRQGRVDSLEQVVQANL<br /> SKITAVMAALRRWARDRGLNPSETDYVARTRDRRRLRFSVTGEDAIERAYRTHWVSPELS<br /> ERAVARQSRRPDLVVIMPVNDWSCASCGGSGDLMFLEDAGPLCLDCADLGHLVFLPSGDA<br /> ALTRRAKRASRLSAVVVRWSRARKRYERQGILVEAEALERAENECLADAEVRARRRERDE<br /> ARRANEDLRLQAEFGAAIRTLFPNCPAGRAEAIARHAATRGSGRIGRSAAGRALDPEAVR<br /> LAVAASVRHIDTSFDELLMSGVDRETARHRVGEHVEEVLRDWRATSR<br /> <br /> ==== Length ====<br /> 347<br /> <br /> ==== Localization ====<br /> Cytoplasmic<br /> <br /> ==== Putative Function ====<br /> Arginine decarboxylase<br /> <br /> ----<br /> <br /> == ''M. bovis'' HP A0A083W0M1 ==<br /> <br /> &lt;Structure load='A0A083W0M1.pdb' size='350' frame='true' align='right' caption='''M. bovis'' HP A0A083W0M1' scene='72/728008/A0a083w0m1/1' /&gt;<br /> <br /> ==== UniProt Name ====<br /> Conserved hypothetical alanine rich protein<br /> <br /> ==== Sequence ====<br /> MSTFRECRSMFDAAVKSYQSGDLANARAAFGRLTVENPDMSDGWLGLLACGDHHLDTLAG<br /> AHQHSEALYSETRRVGLTDGELSAVVMAPMYLGLRVWSRATIGLAYASALIIADRHDEAA<br /> ATLDDPVITEDTGAAQYRQFVMATLFHKTRSWSNLLKVTEISPPSGATDVRDEVADAVAA<br /> LASTAAASLGQFQFALELAEQVSTTNPRVTADVTLTRAWCLRELGDDDAARVALSATTTG<br /> DAPRTNTTAEQAGSPQPKFRHPYDDGRDLLVARRRPPAGDGWRKAVTKMTFGRVNPEPSA<br /> KREQTDELIQRICAPLADVHKLAFVSAKGGVGKTTMTVLVGNAVARLRGDRVMAVDVDAD<br /> LGDLSARFSERGGPQTNIEHFVSSQHTKRYADVRVHTVMNKDRLEMLGAQNDPRSTYKFG<br /> PEDYGAAMQILETHCNVILLDCGTPVNGPLFSNILNDVTGLVVVASEDVRGVEGALVTLD<br /> WLGAHGFGRLLQHTVVVLNAIQKTRSLVDCGAAENQFRKRVPDFFRIPYDPHLATGLAVD<br /> FSSLKRRTRNAVLDLAGGLAQHYPASRVRPRGEDSWKTWIETMRQVG<br /> <br /> ==== Length ====<br /> 587<br /> <br /> ==== Localization ====<br /> Cytoplasmic<br /> <br /> ==== Putative Function ====<br /> Cell Division Inhibitor MIND<br /> <br /> ----<br /> <br /> == ''M. bovis'' HP A0A0C7DGT6 ==<br /> <br /> &lt;Structure load='A0A0C7DGT6.pdb' size='350' frame='true' align='right' caption='''M. bovis'' HP A0A0C7DGT6' scene='72/728008/A0a0c7dgt6/1' /&gt;<br /> <br /> ==== UniProt Name ====<br /> Conserved hypothetical alanine and proline rich protein<br /> <br /> ==== Sequence ====<br /> MADRLNVAERLAEGRPAAEHTQSYVRACHLVGYQHPDLTAYPAQIHDWYGSEDGLDLHAL<br /> DADCAQLRAAASVLMEALRMERSQVAVLAAAWTGSGADAAVHFVQRHCETGNSVVTEVRA<br /> AAQRCESLRDNLWQLVDSKVATAIAIDERALAQRPAWLAAAEALTTEGADRPTAVEVVRQ<br /> QIQPYVDDDVRNDWLTTMRSTTAGVAASYDAVTDQLASAPRAHFEIPDDLGPGRQPSPAS<br /> VPAQPSATAAITPAAALPPPDPVPAVTSRPVTPSDFGSAPGDGSATPAGVGSAGGFGDAG<br /> GTGGLGGFAGLAGLANRIVDAVDSLLGSVAEQLGDPLAADNPPGAVDPFAEDAADNADDG<br /> DDAHPEEAGEAAEPKEATEPDEADEVDDADESVPAERAQDVAEEATLPPVAEPPPPAAPP<br /> VAEPPPPVAAPAPPGAPEPANGPSPEALSEGATPCEIAADELPQAGP<br /> <br /> ==== Length ====<br /> 467<br /> <br /> ==== Localization ====<br /> Cytoplasmic<br /> <br /> ==== Putative Function ====<br /> Undetermined<br /> <br /> ----</div>

Bhaskar Ganguly https://proteopedia.org/index.php?title=User:Bhaskar_Ganguly/MyBo_HyPo&diff=2586093 2016-04-10T11:46:44Z

<p>Bhaskar Ganguly: </p> <hr /> <div>'''The ''MyBo'' HyPo Database'''<br /> ----<br /> <br /> Welcome to the ''Mycobacterium bovis''' Hypothetical Protein (''MyBo'' HyPo) Project.<br /> <br /> The MyBo HyPo Project aims a computational characterization of all hypothetical proteins (HPs) of ''M. bovis''. As for now, computationally-derived models of 14 ''M. bovis'' HP UniRefs, obtained at a 90% sequence identity cut-off from the UniProt Database, are being included. These models shall be updated as and when models of better quality become available. We also plan to add models for other sequences over the coming periods of time.<br /> - ''Bhaskar Ganguly'', Ph.D.; ''Sunil Kr. Rastogi'', Ph.D.<br /> <br /> <br /> == ''M. bovis'' HP A0A083W064 ==<br /> <br /> &lt;Structure load='A0A083W064.pdb' size='300' frame='true' align='right' caption='''M. bovis'' HP A0A083W064' scene='72/728008/A0a083w064/1' /&gt;<br /> <br /> ==== Sequence ====<br /> MARQPLEQRVARAAQAALARQRFVSAIDVLLGLGWLAPSHVDQWRQGRVDSLEQVVQANL<br /> SKITAVMAALRRWARDRGLNPSETDYVARTRDRRRLRFSVTGEDAIERAYRTHWVSPELS<br /> ERAVARQSRRPDLVVIMPVNDWSCASCGGSGDLMFLEDAGPLCLDCADLGHLVFLPSGDA<br /> ALTRRAKRASRLSAVVVRWSRARKRYERQGILVEAEALERAENECLADAEVRARRRERDE<br /> ARRANEDLRLQAEFGAAIRTLFPNCPAGRAEAIARHAATRGSGRIGRSAAGRALDPEAVR<br /> LAVAASVRHIDTSFDELLMSGVDRETARHRVGEHVEEVLRDWRATSR<br /> <br /> ==== Length ====<br /> 347<br /> <br /> ==== Localization ====<br /> Cytoplasmic<br /> <br /> ==== Putative Function ====<br /> Arginine decarboxylase<br /> <br /> ----<br /> <br /> == ''M. bovis'' HP A0A083W0M1 ==<br /> <br /> &lt;Structure load='A0A083W0M1.pdb' size='300' frame='true' align='right' caption='''M. bovis'' HP A0A083W0M1' scene='72/728008/A0a083w0m1/1' /&gt;<br /> <br /> ==== Sequence ====<br /> MSTFRECRSMFDAAVKSYQSGDLANARAAFGRLTVENPDMSDGWLGLLACGDHHLDTLAG<br /> AHQHSEALYSETRRVGLTDGELSAVVMAPMYLGLRVWSRATIGLAYASALIIADRHDEAA<br /> ATLDDPVITEDTGAAQYRQFVMATLFHKTRSWSNLLKVTEISPPSGATDVRDEVADAVAA<br /> LASTAAASLGQFQFALELAEQVSTTNPRVTADVTLTRAWCLRELGDDDAARVALSATTTG<br /> DAPRTNTTAEQAGSPQPKFRHPYDDGRDLLVARRRPPAGDGWRKAVTKMTFGRVNPEPSA<br /> KREQTDELIQRICAPLADVHKLAFVSAKGGVGKTTMTVLVGNAVARLRGDRVMAVDVDAD<br /> LGDLSARFSERGGPQTNIEHFVSSQHTKRYADVRVHTVMNKDRLEMLGAQNDPRSTYKFG<br /> PEDYGAAMQILETHCNVILLDCGTPVNGPLFSNILNDVTGLVVVASEDVRGVEGALVTLD<br /> WLGAHGFGRLLQHTVVVLNAIQKTRSLVDCGAAENQFRKRVPDFFRIPYDPHLATGLAVD<br /> FSSLKRRTRNAVLDLAGGLAQHYPASRVRPRGEDSWKTWIETMRQVG<br /> <br /> ==== Length ====<br /> 587<br /> <br /> ==== Localization ====<br /> Cytoplasmic<br /> <br /> ==== Putative Function ====<br /> Cell Division Inhibitor MIND<br /> <br /> ----</div>

Bhaskar Ganguly https://proteopedia.org/index.php?title=User:Bhaskar_Ganguly/MyBo_HyPo&diff=2586092 2016-04-10T11:41:14Z

<p>Bhaskar Ganguly: </p> <hr /> <div>'''The ''MyBo'' HyPo Database'''<br /> ----<br /> <br /> Welcome to the ''Mycobacterium bovis''' Hypothetical Protein (''MyBo'' HyPo) Project.<br /> <br /> The MyBo HyPo Project aims a computational characterization of all hypothetical proteins (HPs) of ''M. bovis''. As for now, computationally-derived models of 14 ''M. bovis'' HP UniRefs, obtained at a 90% sequence identity cut-off from the UniProt Database, are being included. These models shall be updated as and when models of better quality become available. We also plan to add models for other sequences over the coming periods of time.<br /> - ''Bhaskar Ganguly'', Ph.D.; ''Sunil Kr. Rastogi'', Ph.D.<br /> <br /> <br /> == ''M. bovis'' HP A0A083W064 ==<br /> <br /> &lt;Structure load='A0A083W064.pdb' size='300' frame='true' align='right' caption='''M. bovis'' HP A0A083W064' scene='72/728008/A0a083w064/1' /&gt;<br /> <br /> ==== Sequence ====<br /> MARQPLEQRVARAAQAALARQRFVSAIDVLLGLGWLAPSHVDQWRQGRVDSLEQVVQANL<br /> SKITAVMAALRRWARDRGLNPSETDYVARTRDRRRLRFSVTGEDAIERAYRTHWVSPELS<br /> ERAVARQSRRPDLVVIMPVNDWSCASCGGSGDLMFLEDAGPLCLDCADLGHLVFLPSGDA<br /> ALTRRAKRASRLSAVVVRWSRARKRYERQGILVEAEALERAENECLADAEVRARRRERDE<br /> ARRANEDLRLQAEFGAAIRTLFPNCPAGRAEAIARHAATRGSGRIGRSAAGRALDPEAVR<br /> LAVAASVRHIDTSFDELLMSGVDRETARHRVGEHVEEVLRDWRATSR<br /> <br /> ==== Length ====<br /> 347<br /> <br /> ==== Localization ====<br /> Cytoplasmic<br /> <br /> ==== Putative Function ====<br /> Arginine decarboxylase<br /> <br /> ----<br /> <br /> == ''M. bovis'' HP A0A083W064 ==<br /> <br /> &lt;Structure load='A0A083W064.pdb' size='300' frame='true' align='right' caption='''M. bovis'' HP A0A083W064' scene='72/728008/A0a083w064/1' /&gt;<br /> <br /> ==== Sequence ====<br /> MARQPLEQRVARAAQAALARQRFVSAIDVLLGLGWLAPSHVDQWRQGRVDSLEQVVQANL<br /> SKITAVMAALRRWARDRGLNPSETDYVARTRDRRRLRFSVTGEDAIERAYRTHWVSPELS<br /> ERAVARQSRRPDLVVIMPVNDWSCASCGGSGDLMFLEDAGPLCLDCADLGHLVFLPSGDA<br /> ALTRRAKRASRLSAVVVRWSRARKRYERQGILVEAEALERAENECLADAEVRARRRERDE<br /> ARRANEDLRLQAEFGAAIRTLFPNCPAGRAEAIARHAATRGSGRIGRSAAGRALDPEAVR<br /> LAVAASVRHIDTSFDELLMSGVDRETARHRVGEHVEEVLRDWRATSR<br /> <br /> ==== Length ====<br /> 347<br /> <br /> ==== Localization ====<br /> Cytoplasmic<br /> <br /> ==== Putative Function ====<br /> Arginine decarboxylase<br /> <br /> ----</div>

Bhaskar Ganguly https://proteopedia.org/index.php?title=User:Bhaskar_Ganguly/MyBo_HyPo&diff=2586091 2016-04-10T11:38:49Z

<p>Bhaskar Ganguly: </p> <hr /> <div>'''The ''MyBo'' HyPo Database'''<br /> ----<br /> <br /> Welcome to the ''Mycobacterium bovis''' Hypothetical Protein (''MyBo'' HyPo) Project.<br /> <br /> The MyBo HyPo Project aims a computational characterization of all hypothetical proteins (HPs) of ''M. bovis''. As for now, computationally-derived models of 14 ''M. bovis'' HP UniRefs, obtained at a 90% sequence identity cut-off from the UniProt Database, are being included. These models shall be updated as and when models of better quality become available. We also plan to add models for other sequences over the coming periods of time.<br /> - ''Bhaskar Ganguly'', Ph.D.; ''Sunil Kr. Rastogi'', Ph.D.<br /> <br /> <br /> == ''M. bovis'' HP A0A083W064 ==<br /> <br /> &lt;Structure load='A0A083W064.pdb' size='300' frame='true' align='right' caption='''M. bovis'' HP A0A083W064' scene='72/728008/A0a083w064/1' /&gt;<br /> <br /> ==== Sequence ====<br /> MARQPLEQRVARAAQAALARQRFVSAIDVLLGLGWLAPSHVDQWRQGRVDSLEQVVQANL<br /> SKITAVMAALRRWARDRGLNPSETDYVARTRDRRRLRFSVTGEDAIERAYRTHWVSPELS<br /> ERAVARQSRRPDLVVIMPVNDWSCASCGGSGDLMFLEDAGPLCLDCADLGHLVFLPSGDA<br /> ALTRRAKRASRLSAVVVRWSRARKRYERQGILVEAEALERAENECLADAEVRARRRERDE<br /> ARRANEDLRLQAEFGAAIRTLFPNCPAGRAEAIARHAATRGSGRIGRSAAGRALDPEAVR<br /> LAVAASVRHIDTSFDELLMSGVDRETARHRVGEHVEEVLRDWRATSR<br /> <br /> ==== Length ====<br /> 347<br /> <br /> ==== Localization ====<br /> Cytoplasmic<br /> <br /> ==== Putative Function ====<br /> Arginine decarboxylase<br /> <br /> ----<br /> <br /> <br /> == Disease ==<br /> <br /> == Relevance ==<br /> <br /> == Structural highlights ==<br /> <br /> <br /> == References ==<br /> &lt;references/&gt;</div>

Bhaskar Ganguly https://proteopedia.org/index.php?title=User:Bhaskar_Ganguly/MyBo_HyPo&diff=2586090 2016-04-10T11:36:52Z

<p>Bhaskar Ganguly: </p> <hr /> <div>'''The ''MyBo'' HyPo Database'''<br /> ----<br /> <br /> Welcome to the ''Mycobacterium bovis''' Hypothetical Protein (''MyBo'' HyPo) Project.<br /> <br /> The MyBo HyPo Project aims a computational characterization of all hypothetical proteins (HPs) of ''M. bovis''. As for now, computationally-derived models of 14 ''M. bovis'' HP UniRefs, obtained at a 90% sequence identity cut-off from the UniProt Database, are being included. These models shall be updated as and when models of better quality become available. We also plan to add models for other sequences over the coming periods of time.<br /> - ''Bhaskar Ganguly'', Ph.D.; ''Sunil Kr. Rastogi'', Ph.D.<br /> <br /> <br /> == ''M. bovis'' HP A0A083W064 ==<br /> <br /> &lt;Structure load='A0A083W064.pdb' size='300' frame='true' align='right' caption='''M. bovis'' HP A0A083W064' scene='72/728008/A0a083w064/1' /&gt;<br /> <br /> ==== Sequence ====<br /> MARQPLEQRVARAAQAALARQRFVSAIDVLLGLGWLAPSHVDQWRQGRVDSLEQVVQANL<br /> SKITAVMAALRRWARDRGLNPSETDYVARTRDRRRLRFSVTGEDAIERAYRTHWVSPELS<br /> ERAVARQSRRPDLVVIMPVNDWSCASCGGSGDLMFLEDAGPLCLDCADLGHLVFLPSGDA<br /> ALTRRAKRASRLSAVVVRWSRARKRYERQGILVEAEALERAENECLADAEVRARRRERDE<br /> ARRANEDLRLQAEFGAAIRTLFPNCPAGRAEAIARHAATRGSGRIGRSAAGRALDPEAVR<br /> LAVAASVRHIDTSFDELLMSGVDRETARHRVGEHVEEVLRDWRATSR<br /> <br /> ==== Length ====<br /> 347<br /> <br /> ==== Localization ====<br /> Cytoplasmic<br /> <br /> ==== Putative Function ====<br /> Arginine decarboxylase<br /> <br /> == Disease ==<br /> <br /> == Relevance ==<br /> <br /> == Structural highlights ==<br /> <br /> <br /> == References ==<br /> &lt;references/&gt;</div>

Bhaskar Ganguly https://proteopedia.org/index.php?title=User:Bhaskar_Ganguly/MyBo_HyPo&diff=2586089 2016-04-10T11:35:03Z

<p>Bhaskar Ganguly: </p> <hr /> <div>'''The ''MyBo'' HyPo Database'''<br /> ----<br /> <br /> Welcome to the ''Mycobacterium bovis''' Hypothetical Protein (''MyBo'' HyPo) Project.<br /> <br /> The MyBo HyPo Project aims a computational characterization of all hypothetical proteins (HPs) of ''M. bovis''. As for now, computationally-derived models of 14 ''M. bovis'' HP UniRefs, obtained at a 90% sequence identity cut-off from the UniProt Database, are being included. These models shall be updated as and when models of better quality become available. We also plan to add models for other sequences over the coming periods of time.<br /> - ''Bhaskar Ganguly'', Ph.D.; ''Sunil Kr. Rastogi'', Ph.D.<br /> <br /> <br /> == ''M. bovis'' HP A0A083W064 ==<br /> <br /> &lt;Structure load='A0A083W064.pdb' size='350' frame='true' align='right' caption='''M. bovis'' HP A0A083W064' scene='72/728008/A0a083w064/1' /&gt;<br /> <br /> ==== Sequence ====<br /> MARQPLEQRVARAAQAALARQRFVSAIDVLLGLGWLAPSHVDQWRQGRVDSLEQVVQANL<br /> SKITAVMAALRRWARDRGLNPSETDYVARTRDRRRLRFSVTGEDAIERAYRTHWVSPELS<br /> ERAVARQSRRPDLVVIMPVNDWSCASCGGSGDLMFLEDAGPLCLDCADLGHLVFLPSGDA<br /> ALTRRAKRASRLSAVVVRWSRARKRYERQGILVEAEALERAENECLADAEVRARRRERDE<br /> ARRANEDLRLQAEFGAAIRTLFPNCPAGRAEAIARHAATRGSGRIGRSAAGRALDPEAVR<br /> LAVAASVRHIDTSFDELLMSGVDRETARHRVGEHVEEVLRDWRATSR<br /> <br /> ==== Length ====<br /> 347<br /> <br /> ==== Localization ====<br /> Cytoplasmic<br /> <br /> ==== Putative Function ====<br /> Arginine decarboxylase<br /> <br /> == Disease ==<br /> <br /> == Relevance ==<br /> <br /> == Structural highlights ==<br /> <br /> <br /> == References ==<br /> &lt;references/&gt;</div>

Bhaskar Ganguly https://proteopedia.org/index.php?title=User:Bhaskar_Ganguly/MyBo_HyPo&diff=2586088 2016-04-10T11:32:09Z

<p>Bhaskar Ganguly: </p> <hr /> <div>'''The ''MyBo'' HyPo Database'''<br /> ----<br /> <br /> Welcome to the ''Mycobacterium bovis''' Hypothetical Protein (''MyBo'' HyPo) Project.<br /> <br /> The MyBo HyPo Project aims a computational characterization of all hypothetical proteins (HPs) of ''M. bovis''. As for now, computationally-derived models of 14 ''M. bovis'' HP UniRefs, obtained at a 90% sequence identity cut-off from the UniProt Database, are being included. These models shall be updated as and when models of better quality become available. We also plan to add models for other sequences over the coming periods of time.<br /> - ''Bhaskar Ganguly'', Ph.D.; ''Sunil Kr. Rastogi'', Ph.D.<br /> <br /> <br /> == ''M. bovis'' HP A0A083W064 ==<br /> <br /> &lt;Structure load='A0A083W064.pdb' size='350' frame='true' align='right' caption='''M. bovis'' HP A0A083W064' scene='72/728008/A0a083w064/1' /&gt;<br /> <br /> ==== Length ====<br /> 347<br /> <br /> ==== Localization ====<br /> Cytoplasmic<br /> <br /> ==== Putative Function ====<br /> Arginine decarboxylase<br /> <br /> == Disease ==<br /> <br /> == Relevance ==<br /> <br /> == Structural highlights ==<br /> <br /> <br /> == References ==<br /> &lt;references/&gt;</div>

Bhaskar Ganguly https://proteopedia.org/index.php?title=User:Bhaskar_Ganguly/MyBo_HyPo&diff=2586085 2016-04-10T11:26:04Z

<p>Bhaskar Ganguly: </p> <hr /> <div>'''The ''MyBo'' HyPo Database'''<br /> ----<br /> <br /> Welcome to the ''Mycobacterium bovis''' Hypothetical Protein (''MyBo'' HyPo) Database.<br /> <br /> The MyBo HyPo Project aims a computational characterization of all hypothetical proteins (HPs) of ''M. bovis''. As for now, models of 14 ''M. bovis'' HP UniRefs, obtained at a 90% sequence identity cut-off from the UniProt Database, are being included. We plan to add models for other sequences over the coming period of time.<br /> - ''Bhaskar Ganguly'', Ph.D.; ''Sunil Kr. Rastogi'', Ph.D.<br /> <br /> <br /> == ''M. bovis'' HP A0A083W064 ==<br /> <br /> &lt;Structure load='A0A083W064.pdb' size='350' frame='true' align='right' caption='''M. bovis'' HP A0A083W064' scene='72/728008/A0a083w064/1' /&gt;<br /> <br /> ==== Function ====<br /> <br /> == Disease ==<br /> <br /> == Relevance ==<br /> <br /> == Structural highlights ==<br /> <br /> <br /> == References ==<br /> &lt;references/&gt;</div>

Bhaskar Ganguly https://proteopedia.org/index.php?title=User:Bhaskar_Ganguly/MyBo_HyPo&diff=2586084 2016-04-10T11:18:22Z

<p>Bhaskar Ganguly: </p> <hr /> <div>'''The ''MyBo'' HyPo Database'''<br /> ----<br /> <br /> Welcome to the ''Mycobacterium bovis''' Hypothetical Protein (''MyBo'' HyPo) Database.<br /> <br /> The MyBo HyPo Project aims a computational characterization of all hypothetical proteins (HPs) of ''M. bovis''. As for now, models of 14 ''M. bovis'' HP UniRefs, obtained at a 90% sequence identity cut-off from the UniProt Database, are being included. We plan to add models for other sequences over the coming period of time.<br /> - ''Bhaskar Ganguly'', Ph.D.; ''Sunil Kr. Rastogi'', Ph.D.<br /> <br /> <br /> == ''M. bovis'' HP A0A083W064 ==<br /> <br /> &lt;Structure load='A0A083W064.pdb' size='350' frame='true' align='right' caption='''M. bovis'' HP A0A083W064' scene='72/728006/Mybo_hp_a0a083w064/1' /&gt;<br /> <br /> ==== Function ====<br /> <br /> == Disease ==<br /> <br /> == Relevance ==<br /> <br /> == Structural highlights ==<br /> <br /> <br /> == References ==<br /> &lt;references/&gt;</div>

Bhaskar Ganguly https://proteopedia.org/index.php?title=File:A0A083W378.pdb&diff=2586083 2016-04-10T11:14:08Z

<p>Bhaskar Ganguly: </p> <hr /> <div>== Licensing ==<br /> {{self|cc-by-sa-3.0|GFDL}}</div>

Bhaskar Ganguly https://proteopedia.org/index.php?title=File:A0A083W064.pdb&diff=2586082 2016-04-10T11:13:30Z

<p>Bhaskar Ganguly: </p> <hr /> <div>== Licensing ==<br /> {{self|cc-by-sa-3.0|GFDL}}</div>

Bhaskar Ganguly https://proteopedia.org/index.php?title=File:A0A083W2L5.pdb&diff=2586081 2016-04-10T11:12:46Z

<p>Bhaskar Ganguly: </p> <hr /> <div>== Licensing ==<br /> {{self|cc-by-sa-3.0|GFDL}}</div>

Bhaskar Ganguly https://proteopedia.org/index.php?title=File:A0A083W0M1.pdb&diff=2586080 2016-04-10T11:12:19Z

<p>Bhaskar Ganguly: </p> <hr /> <div>== Licensing ==<br /> {{self|cc-by-sa-3.0|GFDL}}</div>

Bhaskar Ganguly https://proteopedia.org/index.php?title=File:A0A083VYR3.pdb&diff=2586079 2016-04-10T11:11:44Z

<p>Bhaskar Ganguly: </p> <hr /> <div>== Licensing ==<br /> {{self|cc-by-sa-3.0|GFDL}}</div>

Bhaskar Ganguly https://proteopedia.org/index.php?title=File:A0A083VUK1.pdb&diff=2586078 2016-04-10T11:11:15Z

<p>Bhaskar Ganguly: </p> <hr /> <div>== Licensing ==<br /> {{self|cc-by-sa-3.0|GFDL}}</div>

Bhaskar Ganguly https://proteopedia.org/index.php?title=File:A0A083VTH6.pdb&diff=2586077 2016-04-10T11:10:49Z

<p>Bhaskar Ganguly: </p> <hr /> <div>== Licensing ==<br /> {{self|cc-by-sa-3.0|GFDL}}</div>

Bhaskar Ganguly https://proteopedia.org/index.php?title=File:A0A083VPW0.pdb&diff=2586076 2016-04-10T11:09:29Z

<p>Bhaskar Ganguly: </p> <hr /> <div>== Licensing ==<br /> {{self|cc-by-sa-3.0|GFDL}}</div>

Bhaskar Ganguly https://proteopedia.org/index.php?title=File:A0A083VPS0.pdb&diff=2586075 2016-04-10T11:08:22Z

<p>Bhaskar Ganguly: uploaded a new version of &quot;Image:A0A083VPS0.pdb&quot;</p> <hr /> <div>== Summary ==<br /> Computationally derived structure for Mycobacterium bovis hypothetical protein A0A083VPS0. <br /> == Licensing ==<br /> {{self|cc-by-sa-3.0|GFDL}}</div>

Bhaskar Ganguly https://proteopedia.org/index.php?title=File:A0A0C7DM56.pdb&diff=2586074 2016-04-10T11:06:37Z

<p>Bhaskar Ganguly: </p> <hr /> <div>== Licensing ==<br /> {{self|cc-by-sa-3.0|GFDL}}</div>

Bhaskar Ganguly https://proteopedia.org/index.php?title=File:A0A0C7DHL0.pdb&diff=2586073 2016-04-10T11:05:13Z

<p>Bhaskar Ganguly: </p> <hr /> <div>== Licensing ==<br /> {{self|cc-by-sa-3.0|GFDL}}</div>

Bhaskar Ganguly https://proteopedia.org/index.php?title=File:A0A0C7DGT6.pdb&diff=2586072 2016-04-10T11:04:09Z

<p>Bhaskar Ganguly: uploaded a new version of &quot;Image:A0A0C7DGT6.pdb&quot;</p> <hr /> <div>== Licensing ==<br /> {{self|cc-by-sa-3.0|GFDL}}</div>

Bhaskar Ganguly https://proteopedia.org/index.php?title=File:A0A0C7DGT6.pdb&diff=2586070 2016-04-10T10:59:05Z

<p>Bhaskar Ganguly: </p> <hr /> <div>== Licensing ==<br /> {{self|cc-by-sa-3.0|GFDL}}</div>

Bhaskar Ganguly https://proteopedia.org/index.php?title=User:Bhaskar_Ganguly/MyBo_HyPo&diff=2585559 2016-04-04T14:29:53Z

<p>Bhaskar Ganguly: New page: &#039;&#039;&#039;The &#039;&#039;MyBo&#039;&#039; HyPo Database&#039;&#039;&#039; ---- Welcome to the &#039;&#039;Mycobacterium bovis&#039;&#039;&#039; Hypothetical Protein (&#039;&#039;MyBo&#039;&#039; HyPo) Database. The MyBo HyPo Project aims a computational characterization o...</p> <hr /> <div>'''The ''MyBo'' HyPo Database'''<br /> ----<br /> <br /> Welcome to the ''Mycobacterium bovis''' Hypothetical Protein (''MyBo'' HyPo) Database.<br /> <br /> The MyBo HyPo Project aims a computational characterization of all hypothetical proteins (HPs) of ''M. bovis''. As for now, models of 14 ''M. bovis'' HP UniRefs, obtained at a 90% sequence identity cut-off from the UniProt Database, are being included. We plan to add models for other sequences over the coming period of time.<br /> - ''Bhaskar Ganguly'', Ph.D.; ''Sunil Kr. Rastogi'', Ph.D.<br /> <br /> <br /> == ''M. bovis'' HP A0A083VPS0 ==<br /> <br /> &lt;Structure load='A0A083VPS0.pdb' size='350' frame='true' align='right' caption='''M. bovis'' HP A0A083VPS0' scene='72/728006/Mybo_hp_a0a083vps0/1' /&gt;<br /> <br /> ==== Function ====<br /> <br /> == Disease ==<br /> <br /> == Relevance ==<br /> <br /> == Structural highlights ==<br /> <br /> <br /> == References ==<br /> &lt;references/&gt;</div>

Bhaskar Ganguly https://proteopedia.org/index.php?title=User:Bhaskar_Ganguly&diff=2585558 2016-04-04T14:27:21Z

<p>Bhaskar Ganguly: </p> <hr /> <div>* Bhaskar Ganguly, Ph.D.<br /> <br /> * Field of Expertise or Study: Animal Biotechnology, Veterinary Biochemistry<br /> <br /> * Senior Research Fellow; Animal Biotechnology Center, Department of Veterinary Physiology and Biochemistry, Govind Ballabh Pant University of Agriculture and Technology<br /> <br /> * Pantnagar, Uttarakhand, India. PIN: 263145.<br /> <br /> *[[User:Bhaskar Ganguly/Sandbox 1]]<br /> <br /> *[[User:Bhaskar Ganguly/MyBo_HyPo]]</div>

Bhaskar Ganguly https://proteopedia.org/index.php?title=User:Bhaskar_Ganguly&diff=2585557 2016-04-04T14:25:53Z

<p>Bhaskar Ganguly: </p> <hr /> <div>* Bhaskar Ganguly, Ph.D.<br /> <br /> * Field of Expertise or Study: Animal Biotechnology, Veterinary Biochemistry<br /> <br /> * Senior Research Fellow; Animal Biotechnology Center, Department of Veterinary Physiology and Biochemistry, Govind Ballabh Pant University of Agriculture and Technology<br /> <br /> * Pantnagar, Uttarakhand, India. PIN: 263145.<br /> <br /> *[[User:Bhaskar Ganguly/Sandbox 1]]</div>

Bhaskar Ganguly https://proteopedia.org/index.php?title=User:Bhaskar_Ganguly/Sandbox_1&diff=2585556 2016-04-04T14:12:06Z

<p>Bhaskar Ganguly: </p> <hr /> <div>'''The ''MyBo'' HyPo Project'''<br /> ----<br /> <br /> Welcome to the ''Mycobacterium bovis''' Hypothetical Protein (''MyBo'' HyPo) Project.<br /> <br /> The MyBo HyPo Project aims a computational characterization of all hypothetical proteins (HPs) of ''M. bovis''. As for now, models of 14 ''M. bovis'' HP UniRefs, obtained at a 90% sequence identity cut-off from the UniProt Database, are being included. We plan to add models for other sequences over the coming period of time.<br /> - ''Bhaskar Ganguly'', Ph.D.; ''Sunil Kr. Rastogi'', Ph.D.<br /> <br /> <br /> == ''M. bovis'' HP A0A083VPS0 ==<br /> <br /> &lt;Structure load='A0A083VPS0.pdb' size='350' frame='true' align='right' caption='''M. bovis'' HP A0A083VPS0' scene='72/728006/Mybo_hp_a0a083vps0/1' /&gt;<br /> <br /> ==== Function ====<br /> <br /> == Disease ==<br /> <br /> == Relevance ==<br /> <br /> == Structural highlights ==<br /> <br /> <br /> == References ==<br /> &lt;references/&gt;</div>

Bhaskar Ganguly https://proteopedia.org/index.php?title=User:Bhaskar_Ganguly/Sandbox_1&diff=2585555 2016-04-04T14:09:08Z

<p>Bhaskar Ganguly: </p> <hr /> <div>'''The ''MyBo'' HyPo Project'''<br /> ----<br /> <br /> Welcome to the ''Mycobacterium bovis''' Hypothetical Protein (''MyBo'' HyPo) Project.<br /> <br /> The MyBo HyPo Project aims a computational characterization of all hypothetical proteins (HPs) of ''M. bovis''. As for now, models of 14 ''M. bovis'' HP UniRefs, obtained at a 90% sequence identity cut-off from the UniProt Database, are being included. We plan to add models for other sequences over the coming period of time.<br /> - ''Bhaskar Ganguly'' Ph.D., ''Sunil Kr. Rastogi'' Ph.D.<br /> <br /> <br /> == ''M. bovis'' HP A0A083VPS0 ==<br /> <br /> &lt;Structure load='A0A083VPS0.pdb' size='350' frame='true' align='right' caption='''M. bovis'' HP A0A083VPS0' scene='72/728006/Mybo_hp_a0a083vps0/1' /&gt;<br /> <br /> ==== Function ====<br /> <br /> == Disease ==<br /> <br /> == Relevance ==<br /> <br /> == Structural highlights ==<br /> <br /> <br /> == References ==<br /> &lt;references/&gt;</div>

Bhaskar Ganguly https://proteopedia.org/index.php?title=User:Bhaskar_Ganguly/Sandbox_1&diff=2585554 2016-04-04T14:07:49Z

<p>Bhaskar Ganguly: </p> <hr /> <div>'''The ''MyBo'' HyPo Project'''<br /> ----<br /> <br /> Welcome to the ''Mycobacterium bovis''' Hypothetical Protein (''MyBo'' HyPo) Project.<br /> <br /> The MyBo HyPo Project aims a computational characterization of all hypothetical proteins (HPs) of ''M. bovis''. As for now, models of 14 ''M. bovis'' HP UniRefs, obtained at a 90% sequence identity cut-off from the UniProt Database, are being included. We plan to add models for other sequences over the coming period of time.<br /> - ''Dr. Bhaskar Ganguly'', ''Dr. Sunil Kr. Rastogi''<br /> <br /> <br /> == ''M. bovis'' HP A0A083VPS0 ==<br /> <br /> &lt;Structure load='A0A083VPS0.pdb' size='350' frame='true' align='right' caption='''M. bovis'' HP A0A083VPS0' scene='72/728006/Mybo_hp_a0a083vps0/1' /&gt;<br /> <br /> ==== Function ====<br /> <br /> == Disease ==<br /> <br /> == Relevance ==<br /> <br /> == Structural highlights ==<br /> <br /> <br /> == References ==<br /> &lt;references/&gt;</div>

Bhaskar Ganguly https://proteopedia.org/index.php?title=User:Bhaskar_Ganguly&diff=2585553 2016-04-04T13:53:31Z

<p>Bhaskar Ganguly: </p> <hr /> <div>*[[User:Bhaskar Ganguly/Sandbox 1]]<br /> <br /> * Position: Senior Research Fellow<br /> <br /> * Institution: Animal Biotechnology Center, Department of Veterinary Physiology and Biochemistry, Govind Ballabh Pant University of Agriculture and Technology<br /> <br /> * City, State/Province, Country: Pantnagar, Uttarakhand, India. PIN: 263145.<br /> <br /> * Field of Expertise or Study: Animal Biotechnology, Veterinary Biochemistry</div>

Bhaskar Ganguly https://proteopedia.org/index.php?title=User:Bhaskar_Ganguly/Sandbox_1&diff=2585552 2016-04-04T13:48:51Z

<p>Bhaskar Ganguly: </p> <hr /> <div>The ''MyBo'' HyPo Project<br /> <br /> <br /> == ''M. bovis'' HP A0A083VPS0 ==<br /> <br /> &lt;Structure load='A0A083VPS0.pdb' size='350' frame='true' align='right' caption='''M. bovis'' HP A0A083VPS0' scene='72/728006/Mybo_hp_a0a083vps0/1' /&gt;<br /> <br /> ==== Function ====<br /> <br /> == Disease ==<br /> <br /> == Relevance ==<br /> <br /> == Structural highlights ==<br /> <br /> <br /> == References ==<br /> &lt;references/&gt;</div>

Bhaskar Ganguly https://proteopedia.org/index.php?title=User:Bhaskar_Ganguly/Sandbox_1&diff=2585551 2016-04-04T13:47:57Z

<p>Bhaskar Ganguly: </p> <hr /> <div>==The ''MyBo'' HyPo Project==<br /> <br /> <br /> == ''M. bovis'' HP A0A083VPS0 ==<br /> <br /> &lt;Structure load='A0A083VPS0.pdb' size='350' frame='true' align='right' caption='''M. bovis'' HP A0A083VPS0' scene='72/728006/Mybo_hp_a0a083vps0/1' /&gt;<br /> <br /> ==== Function ====<br /> <br /> == Disease ==<br /> <br /> == Relevance ==<br /> <br /> == Structural highlights ==<br /> <br /> <br /> == References ==<br /> &lt;references/&gt;</div>

Bhaskar Ganguly https://proteopedia.org/index.php?title=User:Bhaskar_Ganguly/Sandbox_1&diff=2585550 2016-04-04T13:47:03Z

<p>Bhaskar Ganguly: </p> <hr /> <div>==The ''MyBo'' HyPo Project==<br /> <br /> <br /> == ''M. bovis'' HP A0A083VPS0 ==<br /> <br /> &lt;Structure load='A0A083VPS0.pdb' size='350' frame='true' align='right' caption='''M. bovis'' HP A0A083VPS0' scene='72/728006/Mybo_hp_a0a083vps0/1' /&gt;<br /> <br /> == Function ==<br /> <br /> == Disease ==<br /> <br /> == Relevance ==<br /> <br /> == Structural highlights ==<br /> <br /> <br /> == References ==<br /> &lt;references/&gt;</div>

Bhaskar Ganguly