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		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_486&amp;diff=1601804</id>
		<title>Sandbox Reserved 486</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_486&amp;diff=1601804"/>
		<updated>2012-11-08T03:08:47Z</updated>

		<summary type="html">&lt;p&gt;Brittany Smith: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Sandbox_Reserved_Robert_B_Rose_1}}&lt;br /&gt;
&amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
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= Diphtheria toxin =&lt;br /&gt;
&#039;&#039;&#039;Diphtheria Toxin&#039;&#039;&#039; is an exotoxin produced by the organism [http://en.wikipedia.org/wiki/Corynebacterium_diphtheriae Corynebcterium diphtheria] which has been infected by a [http://en.wikipedia.org/wiki/Bacteriophage bacteriophage] that contains the Diphtheria toxin gene. The toxin is the causative agent of [http://en.wikipedia.org/wiki/Diphtheria diphtheria]. Symptoms for Diphtheria can range from a sore throat with low-grade fever and an adherent pseudomembrane of the tonsils, pharynx, or nose to  infected skin lesions which lack a characteristic appearance.&amp;lt;ref&amp;gt;http://www.cdc.gov/ncidod/dbmd/diseaseinfo/diptheria_t.htm &amp;lt;/ref&amp;gt; The toxin is distributed to distant organs by the circulatory system and may cause paralysis and congestive heart failure.&amp;lt;ref&amp;gt;http://www.ncbi.nlm.nih.gov/books/NBK7971/ &amp;lt;/ref&amp;gt;  The toxin attacks and kills eukaryotic cells by inactivating the [http://en.wikipedia.org/wiki/Elongation_factor Elongation factor] (&#039;&#039;&#039;EF-2&#039;&#039;&#039;) in translation. EF-2 allows for translocation of the peptidyl-tRNA from the A-site to the P-site, which in turn frees the A site for another aminoacyl-tRNA to bind. By inactivating the elongation factor 2 during translation the protein being made cannot be completed and therefore becomes nonfunctional. The toxin is in a &#039;&#039;&#039;class of A-B&#039;&#039;&#039; which includes cholera toxin, &#039;&#039;Escherichia coli&#039;&#039; heat labile enterotoxin, &#039;&#039;Pseudomonas aeruginosa&#039;&#039; exotoxin A, tetanus, botulinum neurotoxins, and Shiga toxin. A-B class is characterized by two functionally distinct components such as component A is the catalytic components while component B does the receptor binding function.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;Structure load=&#039;1mdt&#039; size=&#039;500&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;Diphtheria toxin structure&#039; scene=&#039;Insert optional scene name here&#039; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== History ==&lt;br /&gt;
Scientist have made efforts since at least the 1740&#039;s to find the caustion and cure for &#039;&#039;&#039;diphtheria toxin&#039;&#039;&#039;. It wasn&#039;t until Koch&#039;s devolpment of medical microbiology and [http://en.wikipedia.org/wiki/Koch&#039;s_postulates Koch&#039;s postulates] that it was even possible for progression towards understanding the molecular causes. It was later in Koch&#039;s laboratory that Friedrich Loeffler isolated a bacteria from a patient that died from &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039;. Koch and Friedrich later inoculated 23 guinea pigs with the isolated bacteria and they all died in two to five days. Loeffler had another observation that only the isolated bacteria from the pigs were growing at the site of inoculation. Therefore, he came to the conclusion that the bacteria isolated was the causation of the &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039;. In Pasture institute in Paris, both Emile Roux and Alexandre Yersin were able to isolate the toxin by growing a pure culture of &#039;&#039;Diphtheria bacilli&#039;&#039; and forcing them through a porcelain filter. This allowed to obtain no bacteria and only the toxin. The toxin was injected into laboratory animals and caused the same symptoms of &#039;&#039;Diphtheria bacilli&#039;&#039;. It wasn&#039;t until sixty-five years later that protein crystals were produced and the structure obtained. [http://en.wikipedia.org/wiki/Emil_Adolf_von_Behring Emil von Behring] published a paper with the discovery of diphtheria antitoxin one week after Koch found out the resistance gained by vaccination from &#039;&#039;Diphtheria bacilli&#039;&#039;. This lead to elimination of the disease diphtheria in developing countries.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Von Behring received a Nobel Prize for the antitoxin which later would be known as antibodies against &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039;. The next vaccine made was one mixed of toxin and antitoxin. The antitoxin relieved the harmful effects of the toxin which was the real vaccine. This was later replaced in 1923 with a vaccine of a formaldehyde-treated Diphtheria toxin. Today in developing countries people get routine vaccinations so that diphtheria is unknown.&lt;br /&gt;
&lt;br /&gt;
== Structure ==&lt;br /&gt;
&lt;br /&gt;
Diphtheria toxin is a protein made of 535 amino acids and is 58kDa in weight. The [http://en.wikipedia.org/wiki/Zymogen proenzyme](zymogen) must be cleaved into fragments A &amp;amp; B and reduced in order for the toxicity gene to be turn on. In each fragment there are two &amp;lt;scene name=&#039;Sandbox_Reserved_486/Disulfide_bonds/1&#039;&amp;gt;Disulfide Bonds&amp;lt;/scene&amp;gt;. There are also three domains C,T, and R that have different functions. The first crystal structure of the toxin was obtained in 1992 by x-ray crystallography. However, the structure was a dimer and generated by freezing the protein. The dimer is non-toxic but becomes a toxic monomer at neutral pH by dissociation. The &amp;lt;scene name=&#039;Sandbox_Reserved_486/Secondary_structure/1&#039;&amp;gt;Secondary Structure&amp;lt;/scene&amp;gt; of the molecule is made up of 24 helices, 31 beta sheets, and turns between each of them which adds up to be 535 residue protein. This makes for a mixture of &amp;lt;scene name=&#039;Sandbox_Reserved_486/Hydrophobic_hydrophilic/1&#039;&amp;gt;hydrophilic and hydrophobic areas&amp;lt;/scene&amp;gt; that allow for the seondary structure. The purple portion of the molecule is the polar ares while the gray was the hydrophobic areas. &lt;br /&gt;
&lt;br /&gt;
*&amp;lt;scene name=&#039;Sandbox_Reserved_486/Fragment_a/1&#039;&amp;gt;Fragment A&amp;lt;/scene&amp;gt; is about molecular mass of 21kDa  and is the catalytically active portion of the protein. &lt;br /&gt;
*&amp;lt;scene name=&#039;Sandbox_Reserved_486/Fragment_b/1&#039;&amp;gt;Fragment B&amp;lt;/scene&amp;gt; is about 37kDa and contains the receptor binding &amp;amp; translocation portions of the protein.&lt;br /&gt;
&lt;br /&gt;
The two fragments are then separated into three domains C, T, and R which correspond to three major functions of the toxin.&lt;br /&gt;
&lt;br /&gt;
*In fragment A contains domain C which contains the &amp;lt;scene name=&#039;Sandbox_Reserved_486/Active_site/1&#039;&amp;gt;Active site&amp;lt;/scene&amp;gt; and does the catalysis for the protein. It contains eight β strands and seven α helices.&lt;br /&gt;
&lt;br /&gt;
*The T domain is found in fragment B and is the translocation portion of the protein. The structure is made up of three layers of α helices. The outer layer contains 3 helices that are rich in polar residues that allow for the molecule to maintain the T domain as well as keeping the toxin soluble in neutral pH. &lt;br /&gt;
&lt;br /&gt;
*Another domain in fragment B is domain R which has the &amp;lt;scene name=&#039;Sandbox_Reserved_486/Receptor_binding_site/1&#039;&amp;gt;Receptor binding site&amp;lt;/scene&amp;gt; for the protein. The domain consist mostly of β sheets and changes conformation when interacting with cell membranes. In the R domain both Lsy516 and Phe530 play a role in recognizing receptors on cell surfaces.&lt;br /&gt;
&lt;br /&gt;
In the mechanism for Diphtheria toxin the R Domain binds to &amp;lt;scene name=&#039;Sandbox_Reserved_486/Ligands/2&#039;&amp;gt;ligands&amp;lt;/scene&amp;gt; which are NAD&amp;lt;sup&amp;gt;+&amp;lt;/sup&amp;gt; which can sometimes be switched with ApUp. The molecule ApUp is bound to a cleft on the front side of the C domain. &lt;br /&gt;
&lt;br /&gt;
[[Image:Page41-2.jpg]] &amp;lt;ref&amp;gt;Parker, M. (1996). Protein toxin structure. (1 ed., pp. 25-43). Georgetown: R.G. Landes Company.&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Mechanism ==&lt;br /&gt;
&lt;br /&gt;
The mechanism begins by the R domain recognizing the target cells by the molecules on the cells surface. A prominent β-hairpin loop of the R domain binds to the surface and allows for a docking station. The ligand that is typically bound on the cell surface is pro-HB-EFG. Binding leads to receptor mediated endocytosis. The T domain translocates the C domain into the cytosol of the cell. The organism &#039;&#039;Corynebacterium diphtheriae&#039;&#039; first secretes the toxin the loop between the C and T domain has to be nicked in order for the toxicity to be turned on. There is one surface protease named [http://en.wikipedia.org/wiki/Furin furin] that is known to nick the area but it is unclear if any other protein helps the process. This process allows for the C domain to dissociate from the T domain after transported(translocated) into the cytosol. This is where the disulfide bonds become reduced. After this happens a drop in pH leads to the formation of the dimer to become an open monomer form. The reduction of the disulfide bonds is the rate determining step of the toxin entrying the cell.&lt;br /&gt;
&lt;br /&gt;
Once entried into the cytosol, the C domain does ADP-ribosylation of EF-2 at diphthamide, a posttranslationally modified histidine residue.  This shuts down all protein synthesis and kills the cell. The K&amp;lt;sub&amp;gt;cat&amp;lt;/sub&amp;gt;/K&amp;lt;sub&amp;gt;M&amp;lt;/sub&amp;gt; of the reaction is about 10&amp;lt;sup&amp;gt;8&amp;lt;/sup&amp;gt; min&amp;lt;sup&amp;gt;-1&amp;lt;/sup&amp;gt; M&amp;lt;sup&amp;gt;-1&amp;lt;/sup&amp;gt;. The figure below shows the reaction happening at the C domain. The C domain binds to the ligand NAD&amp;lt;sup&amp;gt;+&amp;lt;/sup&amp;gt; to begin the reaction. The C domian does have an inhibitor and that is ApUp which is near in the C domain.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[Image:Toxin-1.jpg]]  figure 3: Mechanism of inactivation of elongation factor 2 (EF2) by diphtheria toxin &amp;lt;ref&amp;gt;Stephen, J., &amp;amp; Pietrowski, R. (1981). Bacterial toxins. (1 ed., p. 11). Washington: Van Nostrand Reinhold Co. Ltd. &amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Medical Implications &amp;amp; Possible Application ==&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039; is the causative agent of the disease [http://en.wikipedia.org/wiki/Diphtheria Diphtheria]. The lethal dose for humans and other susceptible eukarya is .1μg of toxin per kg of body weight&amp;lt;ref&amp;gt;Oram , D., &amp;amp; Holmes, R. (2006). Diphtheria toxin. (3 ed., pp. 245-252). Burlington, San Diego, London: Academic Press publications.&amp;lt;/ref&amp;gt;  A vaccine has been made and is routinely used in first world countries as a basic immunization. The vaccine is made up of formaldehyde-treated Diphtheria toxin. However, Diphtheria toxin has been used is many other medical applications such as the drug [http://en.wikipedia.org/wiki/Denileukin_diftitox Denileukin diftitox] and cancer suppressors. Denileukin diftitox is a protein that combines &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039; and [http://en.wikipedia.org/wiki/Interleukin-2 Interleukin 2]. In some  Leukemias and Lymphomas cells express Interleukin receptors in which the drug can bind to and release the toxin within the cells.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Another application that &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039; can be used for is a cancer suppressor. In terms of the R domain of the protein which as we know binds to pro-HB-EFG receptors of the surface of cells and is translocated into the cell by endocytosis. Some scientist have made a non-toxic mutant of diphtheria toxin CRM197 which is being used to block the signaling activity of the receptor. In some cancers such as ovarian cancer, pro-HB-EFG is overexpressed and blocking the signal has shown promise in suppressing the effects of pro-HB-EFG on cancer development.&amp;lt;ref&amp;gt;Oram , D., &amp;amp; Holmes, R. (2006). Diphtheria toxin. (3 ed., pp. 245-252). Burlington, San Diego, London: Academic Press publications.&amp;lt;/ref&amp;gt; Another example, is called [http://en.wikipedia.org/wiki/Immunotoxin immunotoxins] which change the R domain to recognize a specific cell surface and kill that cell. This is being tested against different cancer cell types and has been successful.&lt;br /&gt;
&lt;br /&gt;
== References ==&lt;br /&gt;
* Parker, M. (1996). Protein toxin structure. (1 ed., pp. 25-43). Georgetown: R.G. Landes Company.&lt;br /&gt;
&lt;br /&gt;
*Bennett, M., &amp;amp; Eisenberg, D. (2009, febuary 24). The refined structure of monomeric diphtheria toxin at 2.3 angstroms resolution. Retrieved from http://www.pdb.org/pdb/explore/explore.do?&lt;br /&gt;
&lt;br /&gt;
* Stephen, J., &amp;amp; Pietrowski, R. (1981). Bacterial toxins. (1 ed., p. 11). Washington: Van Nostrand Reinhold Co. Ltd.&lt;br /&gt;
&lt;br /&gt;
* Oram , D., &amp;amp; Holmes, R. (2006). Diphtheria toxin. (3 ed., pp. 245-252). Burlington, San Diego, London: Academic Press publications.&lt;br /&gt;
&lt;br /&gt;
* Diphtheria toxin. (2011, November 25). Retrieved from &amp;lt;http://en.wikipedia.org/wiki/Diphtheria_toxin&amp;gt;&lt;br /&gt;
&lt;br /&gt;
* Murphy JR (1996). &amp;quot;Corynebacterium Diphtheriae: Diphtheria Toxin Production&amp;quot;. In Baron S et al.. Medical microbiology (4 ed.). Galveston, Texas: Univ. of Texas Medical Branch. ISBN 0-9631172-1-1.&lt;br /&gt;
&lt;br /&gt;
=== Footnotes ===&lt;br /&gt;
{{reflist}}&lt;/div&gt;</summary>
		<author><name>Brittany Smith</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_486&amp;diff=1601803</id>
		<title>Sandbox Reserved 486</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_486&amp;diff=1601803"/>
		<updated>2012-11-08T03:07:30Z</updated>

		<summary type="html">&lt;p&gt;Brittany Smith: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Sandbox_Reserved_Robert_B_Rose_1}}&lt;br /&gt;
&amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
= Diphtheria toxin =&lt;br /&gt;
&#039;&#039;&#039;Diphtheria Toxin&#039;&#039;&#039; is an exotoxin produced by the organism [http://en.wikipedia.org/wiki/Corynebacterium_diphtheriae Corynebcterium diphtheria] which has been infected by a [http://en.wikipedia.org/wiki/Bacteriophage bacteriophage] that contains the Diphtheria toxin gene. The toxin is the causative agent of [http://en.wikipedia.org/wiki/Diphtheria diphtheria]. Symptoms for Diphtheria can range from a sore throat with low-grade fever and an adherent pseudomembrane of the tonsils, pharynx, or nose to  infected skin lesions which lack a characteristic appearance.&amp;lt;ref&amp;gt;http://www.cdc.gov/ncidod/dbmd/diseaseinfo/diptheria_t.htm &amp;lt;/ref&amp;gt; The toxin is distributed to distant organs by the circulatory system and may cause paralysis and congestive heart failure.&amp;lt;ref&amp;gt;http://www.ncbi.nlm.nih.gov/books/NBK7971/ &amp;lt;/ref&amp;gt;  The toxin attacks and kills eukaryotic cells by inactivating the [http://en.wikipedia.org/wiki/Elongation_factor Elongation factor] (&#039;&#039;&#039;EF-2&#039;&#039;&#039;) in translation. EF-2 allows for translocation of the peptidyl-tRNA from the A-site to the P-site, which in turn frees the A site for another aminoacyl-tRNA to bind. By inactivating the elongation factor 2 during translation the protein being made cannot be completed and therefore becomes nonfunctional. The toxin is in a &#039;&#039;&#039;class of A-B&#039;&#039;&#039; which includes cholera toxin, &#039;&#039;Escherichia coli&#039;&#039; heat labile enterotoxin, &#039;&#039;Pseudomonas aeruginosa&#039;&#039; exotoxin A, tetanus, botulinum neurotoxins, and Shiga toxin. A-B class is characterized by two functionally distinct components such as component A is the catalytic components while component B does the receptor binding function.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;Structure load=&#039;1mdt&#039; size=&#039;500&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;Diphtheria toxin structure&#039; scene=&#039;Insert optional scene name here&#039; /&amp;gt;&lt;br /&gt;
[http://en.wikipedia.org/wiki/Bacteria]&lt;br /&gt;
&lt;br /&gt;
== History ==&lt;br /&gt;
Scientist have made efforts since at least the 1740&#039;s to find the caustion and cure for &#039;&#039;&#039;diphtheria toxin&#039;&#039;&#039;. It wasn&#039;t until Koch&#039;s devolpment of medical microbiology and [http://en.wikipedia.org/wiki/Koch&#039;s_postulates Koch&#039;s postulates] that it was even possible for progression towards understanding the molecular causes. It was later in Koch&#039;s laboratory that Friedrich Loeffler isolated a bacteria from a patient that died from &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039;. Koch and Friedrich later inoculated 23 guinea pigs with the isolated bacteria and they all died in two to five days. Loeffler had another observation that only the isolated bacteria from the pigs were growing at the site of inoculation. Therefore, he came to the conclusion that the bacteria isolated was the causation of the &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039;. In Pasture institute in Paris, both Emile Roux and Alexandre Yersin were able to isolate the toxin by growing a pure culture of &#039;&#039;Diphtheria bacilli&#039;&#039; and forcing them through a porcelain filter. This allowed to obtain no bacteria and only the toxin. The toxin was injected into laboratory animals and caused the same symptoms of &#039;&#039;Diphtheria bacilli&#039;&#039;. It wasn&#039;t until sixty-five years later that protein crystals were produced and the structure obtained. [http://en.wikipedia.org/wiki/Emil_Adolf_von_Behring Emil von Behring] published a paper with the discovery of diphtheria antitoxin one week after Koch found out the resistance gained by vaccination from &#039;&#039;Diphtheria bacilli&#039;&#039;. This lead to elimination of the disease diphtheria in developing countries.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Von Behring received a Nobel Prize for the antitoxin which later would be known as antibodies against &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039;. The next vaccine made was one mixed of toxin and antitoxin. The antitoxin relieved the harmful effects of the toxin which was the real vaccine. This was later replaced in 1923 with a vaccine of a formaldehyde-treated Diphtheria toxin. Today in developing countries people get routine vaccinations so that diphtheria is unknown.&lt;br /&gt;
&lt;br /&gt;
== Structure ==&lt;br /&gt;
&lt;br /&gt;
Diphtheria toxin is a protein made of 535 amino acids and is 58kDa in weight. The [http://en.wikipedia.org/wiki/Zymogen proenzyme](zymogen) must be cleaved into fragments A &amp;amp; B and reduced in order for the toxicity gene to be turn on. In each fragment there are two &amp;lt;scene name=&#039;Sandbox_Reserved_486/Disulfide_bonds/1&#039;&amp;gt;Disulfide Bonds&amp;lt;/scene&amp;gt;. There are also three domains C,T, and R that have different functions. The first crystal structure of the toxin was obtained in 1992 by x-ray crystallography. However, the structure was a dimer and generated by freezing the protein. The dimer is non-toxic but becomes a toxic monomer at neutral pH by dissociation. The &amp;lt;scene name=&#039;Sandbox_Reserved_486/Secondary_structure/1&#039;&amp;gt;Secondary Structure&amp;lt;/scene&amp;gt; of the molecule is made up of 24 helices, 31 beta sheets, and turns between each of them which adds up to be 535 residue protein. This makes for a mixture of &amp;lt;scene name=&#039;Sandbox_Reserved_486/Hydrophobic_hydrophilic/1&#039;&amp;gt;hydrophilic and hydrophobic areas&amp;lt;/scene&amp;gt; that allow for the seondary structure. The purple portion of the molecule is the polar ares while the gray was the hydrophobic areas. &lt;br /&gt;
&lt;br /&gt;
*&amp;lt;scene name=&#039;Sandbox_Reserved_486/Fragment_a/1&#039;&amp;gt;Fragment A&amp;lt;/scene&amp;gt; is about molecular mass of 21kDa  and is the catalytically active portion of the protein. &lt;br /&gt;
*&amp;lt;scene name=&#039;Sandbox_Reserved_486/Fragment_b/1&#039;&amp;gt;Fragment B&amp;lt;/scene&amp;gt; is about 37kDa and contains the receptor binding &amp;amp; translocation portions of the protein.&lt;br /&gt;
&lt;br /&gt;
The two fragments are then separated into three domains C, T, and R which correspond to three major functions of the toxin.&lt;br /&gt;
&lt;br /&gt;
*In fragment A contains domain C which contains the &amp;lt;scene name=&#039;Sandbox_Reserved_486/Active_site/1&#039;&amp;gt;Active site&amp;lt;/scene&amp;gt; and does the catalysis for the protein. It contains eight β strands and seven α helices.&lt;br /&gt;
&lt;br /&gt;
*The T domain is found in fragment B and is the translocation portion of the protein. The structure is made up of three layers of α helices. The outer layer contains 3 helices that are rich in polar residues that allow for the molecule to maintain the T domain as well as keeping the toxin soluble in neutral pH. &lt;br /&gt;
&lt;br /&gt;
*Another domain in fragment B is domain R which has the &amp;lt;scene name=&#039;Sandbox_Reserved_486/Receptor_binding_site/1&#039;&amp;gt;Receptor binding site&amp;lt;/scene&amp;gt; for the protein. The domain consist mostly of β sheets and changes conformation when interacting with cell membranes. In the R domain both Lsy516 and Phe530 play a role in recognizing receptors on cell surfaces.&lt;br /&gt;
&lt;br /&gt;
In the mechanism for Diphtheria toxin the R Domain binds to &amp;lt;scene name=&#039;Sandbox_Reserved_486/Ligands/2&#039;&amp;gt;ligands&amp;lt;/scene&amp;gt; which are NAD&amp;lt;sup&amp;gt;+&amp;lt;/sup&amp;gt; which can sometimes be switched with ApUp. The molecule ApUp is bound to a cleft on the front side of the C domain. &lt;br /&gt;
&lt;br /&gt;
[[Image:Page41-2.jpg]] &amp;lt;ref&amp;gt;Parker, M. (1996). Protein toxin structure. (1 ed., pp. 25-43). Georgetown: R.G. Landes Company.&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Mechanism ==&lt;br /&gt;
&lt;br /&gt;
The mechanism begins by the R domain recognizing the target cells by the molecules on the cells surface. A prominent β-hairpin loop of the R domain binds to the surface and allows for a docking station. The ligand that is typically bound on the cell surface is pro-HB-EFG. Binding leads to receptor mediated endocytosis. The T domain translocates the C domain into the cytosol of the cell. The organism &#039;&#039;Corynebacterium diphtheriae&#039;&#039; first secretes the toxin the loop between the C and T domain has to be nicked in order for the toxicity to be turned on. There is one surface protease named [http://en.wikipedia.org/wiki/Furin furin] that is known to nick the area but it is unclear if any other protein helps the process. This process allows for the C domain to dissociate from the T domain after transported(translocated) into the cytosol. This is where the disulfide bonds become reduced. After this happens a drop in pH leads to the formation of the dimer to become an open monomer form. The reduction of the disulfide bonds is the rate determining step of the toxin entrying the cell.&lt;br /&gt;
&lt;br /&gt;
Once entried into the cytosol, the C domain does ADP-ribosylation of EF-2 at diphthamide, a posttranslationally modified histidine residue.  This shuts down all protein synthesis and kills the cell. The K&amp;lt;sub&amp;gt;cat&amp;lt;/sub&amp;gt;/K&amp;lt;sub&amp;gt;M&amp;lt;/sub&amp;gt; of the reaction is about 10&amp;lt;sup&amp;gt;8&amp;lt;/sup&amp;gt; min&amp;lt;sup&amp;gt;-1&amp;lt;/sup&amp;gt; M&amp;lt;sup&amp;gt;-1&amp;lt;/sup&amp;gt;. The figure below shows the reaction happening at the C domain. The C domain binds to the ligand NAD&amp;lt;sup&amp;gt;+&amp;lt;/sup&amp;gt; to begin the reaction. The C domian does have an inhibitor and that is ApUp which is near in the C domain.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[Image:Toxin-1.jpg]]  figure 3: Mechanism of inactivation of elongation factor 2 (EF2) by diphtheria toxin &amp;lt;ref&amp;gt;Stephen, J., &amp;amp; Pietrowski, R. (1981). Bacterial toxins. (1 ed., p. 11). Washington: Van Nostrand Reinhold Co. Ltd. &amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Medical Implications &amp;amp; Possible Application ==&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039; is the causative agent of the disease [http://en.wikipedia.org/wiki/Diphtheria Diphtheria]. The lethal dose for humans and other susceptible eukarya is .1μg of toxin per kg of body weight&amp;lt;ref&amp;gt;Oram , D., &amp;amp; Holmes, R. (2006). Diphtheria toxin. (3 ed., pp. 245-252). Burlington, San Diego, London: Academic Press publications.&amp;lt;/ref&amp;gt;  A vaccine has been made and is routinely used in first world countries as a basic immunization. The vaccine is made up of formaldehyde-treated Diphtheria toxin. However, Diphtheria toxin has been used is many other medical applications such as the drug [http://en.wikipedia.org/wiki/Denileukin_diftitox Denileukin diftitox] and cancer suppressors. Denileukin diftitox is a protein that combines &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039; and [http://en.wikipedia.org/wiki/Interleukin-2 Interleukin 2]. In some  Leukemias and Lymphomas cells express Interleukin receptors in which the drug can bind to and release the toxin within the cells.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Another application that &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039; can be used for is a cancer suppressor. In terms of the R domain of the protein which as we know binds to pro-HB-EFG receptors of the surface of cells and is translocated into the cell by endocytosis. Some scientist have made a non-toxic mutant of diphtheria toxin CRM197 which is being used to block the signaling activity of the receptor. In some cancers such as ovarian cancer, pro-HB-EFG is overexpressed and blocking the signal has shown promise in suppressing the effects of pro-HB-EFG on cancer development.&amp;lt;ref&amp;gt;Oram , D., &amp;amp; Holmes, R. (2006). Diphtheria toxin. (3 ed., pp. 245-252). Burlington, San Diego, London: Academic Press publications.&amp;lt;/ref&amp;gt; Another example, is called [http://en.wikipedia.org/wiki/Immunotoxin immunotoxins] which change the R domain to recognize a specific cell surface and kill that cell. This is being tested against different cancer cell types and has been successful.&lt;br /&gt;
&lt;br /&gt;
== References ==&lt;br /&gt;
* Parker, M. (1996). Protein toxin structure. (1 ed., pp. 25-43). Georgetown: R.G. Landes Company.&lt;br /&gt;
&lt;br /&gt;
*Bennett, M., &amp;amp; Eisenberg, D. (2009, febuary 24). The refined structure of monomeric diphtheria toxin at 2.3 angstroms resolution. Retrieved from http://www.pdb.org/pdb/explore/explore.do?&lt;br /&gt;
&lt;br /&gt;
* Stephen, J., &amp;amp; Pietrowski, R. (1981). Bacterial toxins. (1 ed., p. 11). Washington: Van Nostrand Reinhold Co. Ltd.&lt;br /&gt;
&lt;br /&gt;
* Oram , D., &amp;amp; Holmes, R. (2006). Diphtheria toxin. (3 ed., pp. 245-252). Burlington, San Diego, London: Academic Press publications.&lt;br /&gt;
&lt;br /&gt;
* Diphtheria toxin. (2011, November 25). Retrieved from &amp;lt;http://en.wikipedia.org/wiki/Diphtheria_toxin&amp;gt;&lt;br /&gt;
&lt;br /&gt;
* Murphy JR (1996). &amp;quot;Corynebacterium Diphtheriae: Diphtheria Toxin Production&amp;quot;. In Baron S et al.. Medical microbiology (4 ed.). Galveston, Texas: Univ. of Texas Medical Branch. ISBN 0-9631172-1-1.&lt;br /&gt;
&lt;br /&gt;
=== Footnotes ===&lt;br /&gt;
{{reflist}}&lt;/div&gt;</summary>
		<author><name>Brittany Smith</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_486&amp;diff=1601796</id>
		<title>Sandbox Reserved 486</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_486&amp;diff=1601796"/>
		<updated>2012-11-08T02:58:37Z</updated>

		<summary type="html">&lt;p&gt;Brittany Smith: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Sandbox_Reserved_Robert_B_Rose_1}}&lt;br /&gt;
&amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
= Diphtheria toxin =&lt;br /&gt;
&#039;&#039;&#039;Diphtheria Toxin&#039;&#039;&#039; is an exotoxin produced by the organism [http://en.wikipedia.org/wiki/Corynebacterium_diphtheriae Corynebcterium diphtheria] which has been infected by a [http://en.wikipedia.org/wiki/Bacteriophage bacteriophage] that contains the Diphtheria toxin gene. The toxin is the causative agent of [http://en.wikipedia.org/wiki/Diphtheria diphtheria]. Symptoms for Diphtheria can range from a sore throat with low-grade fever and an adherent pseudomembrane of the tonsils, pharynx, or nose to  infected skin lesions which lack a characteristic appearance.&amp;lt;ref&amp;gt;http://www.cdc.gov/ncidod/dbmd/diseaseinfo/diptheria_t.htm &amp;lt;/ref&amp;gt; The toxin is distributed to distant organs by the circulatory system and may cause paralysis and congestive heart failure.&amp;lt;ref&amp;gt;http://www.ncbi.nlm.nih.gov/books/NBK7971/ &amp;lt;/ref&amp;gt;  The toxin attacks and kills eukaryotic cells by inactivating the [http://en.wikipedia.org/wiki/Elongation_factor Elongation factor] (&#039;&#039;&#039;EF-2&#039;&#039;&#039;) in translation. EF-2 allows for translocation of the peptidyl-tRNA from the A-site to the P-site, which in turn frees the A site for another aminoacyl-tRNA to bind. By inactivating the elongation factor 2 during translation the protein being made cannot be completed and therefore becomes nonfunctional. The toxin is in a &#039;&#039;&#039;class of A-B&#039;&#039;&#039; which includes cholera toxin, &#039;&#039;Escherichia coli&#039;&#039; heat labile enterotoxin, &#039;&#039;Pseudomonas aeruginosa&#039;&#039; exotoxin A, tetanus, botulinum neurotoxins, and Shiga toxin. A-B class is characterized by two functionally distinct components such as component A is the catalytic components while component B does the receptor binding function.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;Structure load=&#039;1mdt&#039; size=&#039;500&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;Diphtheria toxin structure&#039; scene=&#039;Insert optional scene name here&#039; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== History ==&lt;br /&gt;
Scientist have made efforts since at least the 1740&#039;s to find the caustion and cure for &#039;&#039;&#039;diphtheria toxin&#039;&#039;&#039;. It wasn&#039;t until Koch&#039;s devolpment of medical microbiology and [http://en.wikipedia.org/wiki/Koch&#039;s_postulates Koch&#039;s postulates] that it was even possible for progression towards understanding the molecular causes. It was later in Koch&#039;s laboratory that Friedrich Loeffler isolated a bacteria from a patient that died from &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039;. Koch and Friedrich later inoculated 23 guinea pigs with the isolated bacteria and they all died in two to five days. Loeffler had another observation that only the isolated bacteria from the pigs were growing at the site of inoculation. Therefore, he came to the conclusion that the bacteria isolated was the causation of the &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039;. In Pasture institute in Paris, both Emile Roux and Alexandre Yersin were able to isolate the toxin by growing a pure culture of &#039;&#039;Diphtheria bacilli&#039;&#039; and forcing them through a porcelain filter. This allowed to obtain no bacteria and only the toxin. The toxin was injected into laboratory animals and caused the same symptoms of &#039;&#039;Diphtheria bacilli&#039;&#039;. It wasn&#039;t until sixty-five years later that protein crystals were produced and the structure obtained. [http://en.wikipedia.org/wiki/Emil_Adolf_von_Behring Emil von Behring] published a paper with the discovery of diphtheria antitoxin one week after Koch found out the resistance gained by vaccination from &#039;&#039;Diphtheria bacilli&#039;&#039;. This lead to elimination of the disease diphtheria in developing countries.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Von Behring received a Nobel Prize for the antitoxin which later would be known as antibodies against &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039;. The next vaccine made was one mixed of toxin and antitoxin. The antitoxin relieved the harmful effects of the toxin which was the real vaccine. This was later replaced in 1923 with a vaccine of a formaldehyde-treated Diphtheria toxin. Today in developing countries people get routine vaccinations so that diphtheria is unknown.&lt;br /&gt;
&lt;br /&gt;
== Structure ==&lt;br /&gt;
&lt;br /&gt;
Diphtheria toxin is a protein made of 535 amino acids and is 58kDa in weight. The [http://en.wikipedia.org/wiki/Zymogen proenzyme](zymogen) must be cleaved into fragments A &amp;amp; B and reduced in order for the toxicity gene to be turn on. In each fragment there are two &amp;lt;scene name=&#039;Sandbox_Reserved_486/Disulfide_bonds/1&#039;&amp;gt;Disulfide Bonds&amp;lt;/scene&amp;gt;. There are also three domains C,T, and R that have different functions. The first crystal structure of the toxin was obtained in 1992 by x-ray crystallography. However, the structure was a dimer and generated by freezing the protein. The dimer is non-toxic but becomes a toxic monomer at neutral pH by dissociation. The &amp;lt;scene name=&#039;Sandbox_Reserved_486/Secondary_structure/1&#039;&amp;gt;Secondary Structure&amp;lt;/scene&amp;gt; of the molecule is made up of 24 helices, 31 beta sheets, and turns between each of them which adds up to be 535 residue protein. This makes for a mixture of &amp;lt;scene name=&#039;Sandbox_Reserved_486/Hydrophobic_hydrophilic/1&#039;&amp;gt;hydrophilic and hydrophobic areas&amp;lt;/scene&amp;gt; that allow for the seondary structure. The purple portion of the molecule is the polar ares while the gray was the hydrophobic areas. &lt;br /&gt;
&lt;br /&gt;
*&amp;lt;scene name=&#039;Sandbox_Reserved_486/Fragment_a/1&#039;&amp;gt;Fragment A&amp;lt;/scene&amp;gt; is about molecular mass of 21kDa  and is the catalytically active portion of the protein. &lt;br /&gt;
*&amp;lt;scene name=&#039;Sandbox_Reserved_486/Fragment_b/1&#039;&amp;gt;Fragment B&amp;lt;/scene&amp;gt; is about 37kDa and contains the receptor binding &amp;amp; translocation portions of the protein.&lt;br /&gt;
&lt;br /&gt;
The two fragments are then separated into three domains C, T, and R which correspond to three major functions of the toxin.&lt;br /&gt;
&lt;br /&gt;
*In fragment A contains domain C which contains the &amp;lt;scene name=&#039;Sandbox_Reserved_486/Active_site/1&#039;&amp;gt;Active site&amp;lt;/scene&amp;gt; and does the catalysis for the protein. It contains eight β strands and seven α helices.&lt;br /&gt;
&lt;br /&gt;
*The T domain is found in fragment B and is the translocation portion of the protein. The structure is made up of three layers of α helices. The outer layer contains 3 helices that are rich in polar residues that allow for the molecule to maintain the T domain as well as keeping the toxin soluble in neutral pH. &lt;br /&gt;
&lt;br /&gt;
*Another domain in fragment B is domain R which has the &amp;lt;scene name=&#039;Sandbox_Reserved_486/Receptor_binding_site/1&#039;&amp;gt;Receptor binding site&amp;lt;/scene&amp;gt; for the protein. The domain consist mostly of β sheets and changes conformation when interacting with cell membranes. In the R domain both Lsy516 and Phe530 play a role in recognizing receptors on cell surfaces.&lt;br /&gt;
&lt;br /&gt;
In the mechanism for Diphtheria toxin the R Domain binds to &amp;lt;scene name=&#039;Sandbox_Reserved_486/Ligands/2&#039;&amp;gt;ligands&amp;lt;/scene&amp;gt; which are NAD&amp;lt;sup&amp;gt;+&amp;lt;/sup&amp;gt; which can sometimes be switched with ApUp. The molecule ApUp is bound to a cleft on the front side of the C domain. &lt;br /&gt;
&lt;br /&gt;
[[Image:Page41-2.jpg]] &amp;lt;ref&amp;gt;Parker, M. (1996). Protein toxin structure. (1 ed., pp. 25-43). Georgetown: R.G. Landes Company.&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Mechanism ==&lt;br /&gt;
&lt;br /&gt;
The mechanism begins by the R domain recognizing the target cells by the molecules on the cells surface. A prominent β-hairpin loop of the R domain binds to the surface and allows for a docking station. The ligand that is typically bound on the cell surface is pro-HB-EFG. Binding leads to receptor mediated endocytosis. The T domain translocates the C domain into the cytosol of the cell. The organism &#039;&#039;Corynebacterium diphtheriae&#039;&#039; first secretes the toxin the loop between the C and T domain has to be nicked in order for the toxicity to be turned on. There is one surface protease named [http://en.wikipedia.org/wiki/Furin furin] that is known to nick the area but it is unclear if any other protein helps the process. This process allows for the C domain to dissociate from the T domain after transported(translocated) into the cytosol. This is where the disulfide bonds become reduced. After this happens a drop in pH leads to the formation of the dimer to become an open monomer form. The reduction of the disulfide bonds is the rate determining step of the toxin entrying the cell.&lt;br /&gt;
&lt;br /&gt;
Once entried into the cytosol, the C domain does ADP-ribosylation of EF-2 at diphthamide, a posttranslationally modified histidine residue.  This shuts down all protein synthesis and kills the cell. The K&amp;lt;sub&amp;gt;cat&amp;lt;/sub&amp;gt;/K&amp;lt;sub&amp;gt;M&amp;lt;/sub&amp;gt; of the reaction is about 10&amp;lt;sup&amp;gt;8&amp;lt;/sup&amp;gt; min&amp;lt;sup&amp;gt;-1&amp;lt;/sup&amp;gt; M&amp;lt;sup&amp;gt;-1&amp;lt;/sup&amp;gt;. The figure below shows the reaction happening at the C domain. The C domain binds to the ligand NAD&amp;lt;sup&amp;gt;+&amp;lt;/sup&amp;gt; to begin the reaction. The C domian does have an inhibitor and that is ApUp which is near in the C domain.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[Image:Toxin-1.jpg]]  figure 3: Mechanism of inactivation of elongation factor 2 (EF2) by diphtheria toxin &amp;lt;ref&amp;gt;Stephen, J., &amp;amp; Pietrowski, R. (1981). Bacterial toxins. (1 ed., p. 11). Washington: Van Nostrand Reinhold Co. Ltd. &amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Medical Implications &amp;amp; Possible Application ==&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039; is the causative agent of the disease [http://en.wikipedia.org/wiki/Diphtheria Diphtheria]. The lethal dose for humans and other susceptible eukarya is .1μg of toxin per kg of body weight&amp;lt;ref&amp;gt;Oram , D., &amp;amp; Holmes, R. (2006). Diphtheria toxin. (3 ed., pp. 245-252). Burlington, San Diego, London: Academic Press publications.&amp;lt;/ref&amp;gt;  A vaccine has been made and is routinely used in first world countries as a basic immunization. The vaccine is made up of formaldehyde-treated Diphtheria toxin. However, Diphtheria toxin has been used is many other medical applications such as the drug [http://en.wikipedia.org/wiki/Denileukin_diftitox Denileukin diftitox] and cancer suppressors. Denileukin diftitox is a protein that combines &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039; and [http://en.wikipedia.org/wiki/Interleukin-2 Interleukin 2]. In some  Leukemias and Lymphomas cells express Interleukin receptors in which the drug can bind to and release the toxin within the cells.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Another application that &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039; can be used for is a cancer suppressor. In terms of the R domain of the protein which as we know binds to pro-HB-EFG receptors of the surface of cells and is translocated into the cell by endocytosis. Some scientist have made a non-toxic mutant of diphtheria toxin CRM197 which is being used to block the signaling activity of the receptor. In some cancers such as ovarian cancer, pro-HB-EFG is overexpressed and blocking the signal has shown promise in suppressing the effects of pro-HB-EFG on cancer development.&amp;lt;ref&amp;gt;Oram , D., &amp;amp; Holmes, R. (2006). Diphtheria toxin. (3 ed., pp. 245-252). Burlington, San Diego, London: Academic Press publications.&amp;lt;/ref&amp;gt; Another example, is called [http://en.wikipedia.org/wiki/Immunotoxin immunotoxins] which change the R domain to recognize a specific cell surface and kill that cell. This is being tested against different cancer cell types and has been successful.&lt;br /&gt;
&lt;br /&gt;
== References ==&lt;br /&gt;
* Parker, M. (1996). Protein toxin structure. (1 ed., pp. 25-43). Georgetown: R.G. Landes Company.&lt;br /&gt;
&lt;br /&gt;
*Bennett, M., &amp;amp; Eisenberg, D. (2009, febuary 24). The refined structure of monomeric diphtheria toxin at 2.3 angstroms resolution. Retrieved from http://www.pdb.org/pdb/explore/explore.do?&lt;br /&gt;
&lt;br /&gt;
* Stephen, J., &amp;amp; Pietrowski, R. (1981). Bacterial toxins. (1 ed., p. 11). Washington: Van Nostrand Reinhold Co. Ltd.&lt;br /&gt;
&lt;br /&gt;
* Oram , D., &amp;amp; Holmes, R. (2006). Diphtheria toxin. (3 ed., pp. 245-252). Burlington, San Diego, London: Academic Press publications.&lt;br /&gt;
&lt;br /&gt;
* Diphtheria toxin. (2011, November 25). Retrieved from &amp;lt;http://en.wikipedia.org/wiki/Diphtheria_toxin&amp;gt;&lt;br /&gt;
&lt;br /&gt;
* Murphy JR (1996). &amp;quot;Corynebacterium Diphtheriae: Diphtheria Toxin Production&amp;quot;. In Baron S et al.. Medical microbiology (4 ed.). Galveston, Texas: Univ. of Texas Medical Branch. ISBN 0-9631172-1-1.&lt;br /&gt;
&lt;br /&gt;
=== Footnotes ===&lt;br /&gt;
{{reflist}}&lt;/div&gt;</summary>
		<author><name>Brittany Smith</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_486&amp;diff=1601794</id>
		<title>Sandbox Reserved 486</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_486&amp;diff=1601794"/>
		<updated>2012-11-08T02:56:40Z</updated>

		<summary type="html">&lt;p&gt;Brittany Smith: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Sandbox_Reserved_Robert_B_Rose_1}}&lt;br /&gt;
&amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
= Diphtheria toxin =&lt;br /&gt;
&#039;&#039;&#039;Diphtheria Toxin&#039;&#039;&#039; is an exotoxin produced by the organism [http://en.wikipedia.org/wiki/Corynebacterium_diphtheriae Corynebcterium diphtheria] which has been infected by a [http://en.wikipedia.org/wiki/Bacteriophage bacteriophage] that contains the Diphtheria toxin gene. The toxin is the causative agent of [http://en.wikipedia.org/wiki/Diphtheria diphtheria]. Symptoms for Diphtheria can range from a sore throat with low-grade fever and an adherent pseudomembrane of the tonsils, pharynx, or nose to  infected skin lesions which lack a characteristic appearance.&amp;lt;ref&amp;gt;http://www.cdc.gov/ncidod/dbmd/diseaseinfo/diptheria_t.htm &amp;lt;/ref&amp;gt; The toxin is distributed to distant organs by the circulatory system and may cause paralysis and congestive heart failure.&amp;lt;ref&amp;gt;http://www.ncbi.nlm.nih.gov/books/NBK7971/ &amp;lt;/ref&amp;gt;  The toxin attacks and kills eukaryotic cells by inactivating the [http://en.wikipedia.org/wiki/Elongation_factor Elongation factor] (&#039;&#039;&#039;EF-2&#039;&#039;&#039;) in translation. EF-2 allows for translocation of the peptidyl-tRNA from the A-site to the P-site, which in turn frees the A site for another aminoacyl-tRNA to bind. By inactivating the elongation factor 2 during translation the protein being made cannot be completed and therefore becomes nonfunctional. The toxin is in a &#039;&#039;&#039;class of A-B&#039;&#039;&#039; which includes cholera toxin, &#039;&#039;Escherichia coli&#039;&#039; heat labile enterotoxin, &#039;&#039;Pseudomonas aeruginosa&#039;&#039; exotoxin A, tetanus, botulinum neurotoxins, and Shiga toxin. A-B class is characterized by two functionally distinct components such as component A is the catalytic components while component B does the receptor binding function.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;Structure load=&#039;1mdt&#039; size=&#039;500&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;Diphtheria toxin structure&#039; scene=&#039;Insert optional scene name here&#039; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== History ==&lt;br /&gt;
Scientist have made efforts since at least the 1740&#039;s to find the caustion and cure for &#039;&#039;&#039;diphtheria toxin&#039;&#039;&#039;. It wasn&#039;t until Koch&#039;s devolpment of medical microbiology and [http://en.wikipedia.org/wiki/Koch&#039;s_postulates Koch&#039;s postulates] that it was even possible for progression towards understanding the molecular causes. It was later in Koch&#039;s laboratory that Friedrich Loeffler isolated a bacteria from a patient that died from &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039;. Koch and Friedrich later inoculated 23 guinea pigs with the isolated bacteria and they all died in two to five days. Loeffler had another observation that only the isolated bacteria from the pigs were growing at the site of inoculation. Therefore, he came to the conclusion that the bacteria isolated was the causation of the &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039;. In Pasture institute in Paris, both Emile Roux and Alexandre Yersin were able to isolate the toxin by growing a pure culture of &#039;&#039;Diphtheria bacilli&#039;&#039; and forcing them through a porcelain filter. This allowed to obtain no bacteria and only the toxin. The toxin was injected into laboratory animals and caused the same symptoms of &#039;&#039;Diphtheria bacilli&#039;&#039;. It wasn&#039;t until sixty-five years later that protein crystals were produced and the structure obtained. [http://en.wikipedia.org/wiki/Emil_Adolf_von_Behring Emil von Behring] published a paper with the discovery of diphtheria antitoxin one week after Koch found out the resistance gained by vaccination from &#039;&#039;Diphtheria bacilli&#039;&#039;. This lead to elimination of the disease diphtheria in developing countries.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Von Behring received a Nobel Prize for the antitoxin which later would be known as antibodies against &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039;. The next vaccine made was one mixed of toxin and antitoxin. The antitoxin relieved the harmful effects of the toxin which was the real vaccine. This was later replaced in 1923 with a vaccine of a formaldehyde-treated Diphtheria toxin. Today in developing countries people get routine vaccinations so that diphtheria is unknown.&lt;br /&gt;
&lt;br /&gt;
== Structure ==&lt;br /&gt;
&lt;br /&gt;
Diphtheria toxin is a protein made of 535 amino acids and is 58kDa in weight. The [http://en.wikipedia.org/wiki/Zymogen proenzyme](zymogen) must be cleaved into fragments A &amp;amp; B and reduced in order for the toxicity gene to be turn on. In each fragment there are two &amp;lt;scene name=&#039;Sandbox_Reserved_486/Disulfide_bonds/1&#039;&amp;gt;Disulfide Bonds&amp;lt;/scene&amp;gt;. There are also three domains C,T, and R that have different functions. The first crystal structure of the toxin was obtained in 1992 by x-ray crystallography. However, the structure was a dimer and generated by freezing the protein. The dimer is non-toxic but becomes a toxic monomer at neutral pH by dissociation. The &amp;lt;scene name=&#039;Sandbox_Reserved_486/Secondary_structure/1&#039;&amp;gt;Secondary Structure&amp;lt;/scene&amp;gt; of the molecule is made up of 24 helices, 31 beta sheets, and turns between each of them which adds up to be 535 residue protein. This makes for a mixture of &amp;lt;scene name=&#039;Sandbox_Reserved_486/Hydrophobic_hydrophilic/1&#039;&amp;gt;hydrophilic and hydrophobic areas&amp;lt;/scene&amp;gt; that allow for the seondary structure. The purple portion of the molecule is the polar ares while the gray was the hydrophobic areas. &lt;br /&gt;
&lt;br /&gt;
*&amp;lt;scene name=&#039;Sandbox_Reserved_486/Fragment_a/1&#039;&amp;gt;Fragment A&amp;lt;/scene&amp;gt; is about molecular mass of 21kDa  and is the catalytically active portion of the protein. &lt;br /&gt;
*&amp;lt;scene name=&#039;Sandbox_Reserved_486/Fragment_b/1&#039;&amp;gt;Fragment B&amp;lt;/scene&amp;gt; is about 37kDa and contains the receptor binding &amp;amp; translocation portions of the protein.&lt;br /&gt;
&lt;br /&gt;
The two fragments are then separated into three domains C, T, and R which correspond to three major functions of the toxin.&lt;br /&gt;
&lt;br /&gt;
*In fragment A contains domain C which contains the &amp;lt;scene name=&#039;Sandbox_Reserved_486/Active_site/1&#039;&amp;gt;Active site&amp;lt;/scene&amp;gt; and does the catalysis for the protein. It contains eight β strands and seven α helices.&lt;br /&gt;
&lt;br /&gt;
*The T domain is found in fragment B and is the translocation portion of the protein. The structure is made up of three layers of α helices. The outer layer contains 3 helices that are rich in polar residues that allow for the molecule to maintain the T domain as well as keeping the toxin soluble in neutral pH. &lt;br /&gt;
&lt;br /&gt;
*Another domain in fragment B is domain R which has the &amp;lt;scene name=&#039;Sandbox_Reserved_486/Receptor_binding_site/1&#039;&amp;gt;Receptor binding site&amp;lt;/scene&amp;gt; for the protein. The domain consist mostly of β sheets and changes conformation when interacting with cell membranes. In the R domain both Lsy516 and Phe530 play a role in recognizing receptors on cell surfaces.&lt;br /&gt;
&lt;br /&gt;
In the mechanism for Diphtheria toxin the R Domain binds to &amp;lt;scene name=&#039;Sandbox_Reserved_486/Ligands/2&#039;&amp;gt;ligands&amp;lt;/scene&amp;gt; which are NAD&amp;lt;sup&amp;gt;+&amp;lt;/sup&amp;gt; which can sometimes be switched with ApUp. The molecule ApUp is bound to a cleft on the front side of the C domain. &lt;br /&gt;
&lt;br /&gt;
[[Image:Page41-2.jpg]] &amp;lt;ref&amp;gt;Parker, M. (1996). Protein toxin structure. (1 ed., pp. 25-43). Georgetown: R.G. Landes Company.&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Mechanism ==&lt;br /&gt;
&lt;br /&gt;
The mechanism begins by the R domain recognizing the target cells by the molecules on the cells surface. A prominent β-hairpin loop of the R domain binds to the surface and allows for a docking station. The ligand that is typically bound on the cell surface is pro-HB-EFG. Binding leads to receptor mediated endocytosis. The T domain translocates the C domain into the cytosol of the cell. The organism &#039;&#039;Corynebacterium diphtheriae&#039;&#039; first secretes the toxin the loop between the C and T domain has to be nicked in order for the toxicity to be turned on. There is one surface protease named [http://en.wikipedia.org/wiki/Furin furin] that is known to nick the area but it is unclear if any other protein helps the process. This process allows for the C domain to dissociate from the T domain after transported(translocated) into the cytosol. This is where the disulfide bonds become reduced. After this happens a drop in pH leads to the formation of the dimer to become an open monomer form. The reduction of the disulfide bonds is the rate determining step of the toxin entrying the cell.&lt;br /&gt;
&lt;br /&gt;
Once entried into the cytosol, the C domain does ADP-ribosylation of EF-2 at diphthamide, a posttranslationally modified histidine residue.  This shuts down all protein synthesis and kills the cell. The K&amp;lt;sub&amp;gt;cat&amp;lt;/sub&amp;gt;/K&amp;lt;sub&amp;gt;M&amp;lt;/sub&amp;gt; of the reaction is about 10&amp;lt;sup&amp;gt;8&amp;lt;/sup&amp;gt; min&amp;lt;sup&amp;gt;-1&amp;lt;/sup&amp;gt; M&amp;lt;sup&amp;gt;-1&amp;lt;/sup&amp;gt;. The figure below shows the reaction happening at the C domain. The C domain binds to the ligand NAD&amp;lt;sup&amp;gt;+&amp;lt;/sup&amp;gt; to begin the reaction. The C domian does have an inhibitor and that is ApUp which is near in the C domain.&lt;br /&gt;
&lt;br /&gt;
[[Image:Example.jpg]]&lt;br /&gt;
[[Image:Toxin-1.jpg]]  figure 3: Mechanism of inactivation of elongation factor 2 (EF2) by diphtheria toxin &amp;lt;ref&amp;gt;Stephen, J., &amp;amp; Pietrowski, R. (1981). Bacterial toxins. (1 ed., p. 11). Washington: Van Nostrand Reinhold Co. Ltd. &amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Medical Implications &amp;amp; Possible Application ==&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039; is the causative agent of the disease [http://en.wikipedia.org/wiki/Diphtheria Diphtheria]. The lethal dose for humans and other susceptible eukarya is .1μg of toxin per kg of body weight&amp;lt;ref&amp;gt;Oram , D., &amp;amp; Holmes, R. (2006). Diphtheria toxin. (3 ed., pp. 245-252). Burlington, San Diego, London: Academic Press publications.&amp;lt;/ref&amp;gt;  A vaccine has been made and is routinely used in first world countries as a basic immunization. The vaccine is made up of formaldehyde-treated Diphtheria toxin. However, Diphtheria toxin has been used is many other medical applications such as the drug [http://en.wikipedia.org/wiki/Denileukin_diftitox Denileukin diftitox] and cancer suppressors. Denileukin diftitox is a protein that combines &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039; and [http://en.wikipedia.org/wiki/Interleukin-2 Interleukin 2]. In some  Leukemias and Lymphomas cells express Interleukin receptors in which the drug can bind to and release the toxin within the cells.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Another application that &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039; can be used for is a cancer suppressor. In terms of the R domain of the protein which as we know binds to pro-HB-EFG receptors of the surface of cells and is translocated into the cell by endocytosis. Some scientist have made a non-toxic mutant of diphtheria toxin CRM197 which is being used to block the signaling activity of the receptor. In some cancers such as ovarian cancer, pro-HB-EFG is overexpressed and blocking the signal has shown promise in suppressing the effects of pro-HB-EFG on cancer development.&amp;lt;ref&amp;gt;Oram , D., &amp;amp; Holmes, R. (2006). Diphtheria toxin. (3 ed., pp. 245-252). Burlington, San Diego, London: Academic Press publications.&amp;lt;/ref&amp;gt; Another example, is called [http://en.wikipedia.org/wiki/Immunotoxin immunotoxins] which change the R domain to recognize a specific cell surface and kill that cell. This is being tested against different cancer cell types and has been successful.&lt;br /&gt;
&lt;br /&gt;
== References ==&lt;br /&gt;
* Parker, M. (1996). Protein toxin structure. (1 ed., pp. 25-43). Georgetown: R.G. Landes Company.&lt;br /&gt;
&lt;br /&gt;
*Bennett, M., &amp;amp; Eisenberg, D. (2009, febuary 24). The refined structure of monomeric diphtheria toxin at 2.3 angstroms resolution. Retrieved from http://www.pdb.org/pdb/explore/explore.do?&lt;br /&gt;
&lt;br /&gt;
* Stephen, J., &amp;amp; Pietrowski, R. (1981). Bacterial toxins. (1 ed., p. 11). Washington: Van Nostrand Reinhold Co. Ltd.&lt;br /&gt;
&lt;br /&gt;
* Oram , D., &amp;amp; Holmes, R. (2006). Diphtheria toxin. (3 ed., pp. 245-252). Burlington, San Diego, London: Academic Press publications.&lt;br /&gt;
&lt;br /&gt;
* Diphtheria toxin. (2011, November 25). Retrieved from &amp;lt;http://en.wikipedia.org/wiki/Diphtheria_toxin&amp;gt;&lt;br /&gt;
&lt;br /&gt;
* Murphy JR (1996). &amp;quot;Corynebacterium Diphtheriae: Diphtheria Toxin Production&amp;quot;. In Baron S et al.. Medical microbiology (4 ed.). Galveston, Texas: Univ. of Texas Medical Branch. ISBN 0-9631172-1-1.&lt;br /&gt;
&lt;br /&gt;
=== Footnotes ===&lt;br /&gt;
{{reflist}}&lt;/div&gt;</summary>
		<author><name>Brittany Smith</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_486&amp;diff=1601791</id>
		<title>Sandbox Reserved 486</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_486&amp;diff=1601791"/>
		<updated>2012-11-08T02:49:13Z</updated>

		<summary type="html">&lt;p&gt;Brittany Smith: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Sandbox_Reserved_Robert_B_Rose_1}}&lt;br /&gt;
&amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
= Diphtheria toxin =&lt;br /&gt;
&#039;&#039;&#039;Diphtheria Toxin&#039;&#039;&#039; is an exotoxin produced by the organism [http://en.wikipedia.org/wiki/Corynebacterium_diphtheriae Corynebcterium diphtheria] which has been infected by a [http://en.wikipedia.org/wiki/Bacteriophage bacteriophage] that contains the Diphtheria toxin gene. The toxin is the causative agent of [http://en.wikipedia.org/wiki/Diphtheria diphtheria]. Symptoms for Diphtheria can range from a sore throat with low-grade fever and an adherent pseudomembrane of the tonsils, pharynx, or nose to  infected skin lesions which lack a characteristic appearance.&amp;lt;ref&amp;gt;http://www.cdc.gov/ncidod/dbmd/diseaseinfo/diptheria_t.htm &amp;lt;/ref&amp;gt; The toxin is distributed to distant organs by the circulatory system and may cause paralysis and congestive heart failure.&amp;lt;ref&amp;gt;http://www.ncbi.nlm.nih.gov/books/NBK7971/ &amp;lt;/ref&amp;gt;  The toxin attacks and kills eukaryotic cells by inactivating the [http://en.wikipedia.org/wiki/Elongation_factor Elongation factor] (&#039;&#039;&#039;EF-2&#039;&#039;&#039;) in translation. EF-2 allows for translocation of the peptidyl-tRNA from the A-site to the P-site, which in turn frees the A site for another aminoacyl-tRNA to bind. By inactivating the elongation factor 2 during translation the protein being made cannot be completed and therefore becomes nonfunctional. The toxin is in a &#039;&#039;&#039;class of A-B&#039;&#039;&#039; which includes cholera toxin, &#039;&#039;Escherichia coli&#039;&#039; heat labile enterotoxin, &#039;&#039;Pseudomonas aeruginosa&#039;&#039; exotoxin A, tetanus, botulinum neurotoxins, and Shiga toxin. A-B class is characterized by two functionally distinct components such as component A is the catalytic components while component B does the receptor binding function.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;Structure load=&#039;1mdt&#039; size=&#039;500&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;Diphtheria toxin structure&#039; scene=&#039;Insert optional scene name here&#039; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== History ==&lt;br /&gt;
Scientist have made efforts since at least the 1740&#039;s to find the caustion and cure for &#039;&#039;&#039;diphtheria toxin&#039;&#039;&#039;. It wasn&#039;t until Koch&#039;s devolpment of medical microbiology and [http://en.wikipedia.org/wiki/Koch&#039;s_postulates Koch&#039;s postulates] that it was even possible for progression towards understanding the molecular causes. It was later in Koch&#039;s laboratory that Friedrich Loeffler isolated a bacteria from a patient that died from &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039;. Koch and Friedrich later inoculated 23 guinea pigs with the isolated bacteria and they all died in two to five days. Loeffler had another observation that only the isolated bacteria from the pigs were growing at the site of inoculation. Therefore, he came to the conclusion that the bacteria isolated was the causation of the &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039;. In Pasture institute in Paris, both Emile Roux and Alexandre Yersin were able to isolate the toxin by growing a pure culture of &#039;&#039;Diphtheria bacilli&#039;&#039; and forcing them through a porcelain filter. This allowed to obtain no bacteria and only the toxin. The toxin was injected into laboratory animals and caused the same symptoms of &#039;&#039;Diphtheria bacilli&#039;&#039;. It wasn&#039;t until sixty-five years later that protein crystals were produced and the structure obtained. [http://en.wikipedia.org/wiki/Emil_Adolf_von_Behring Emil von Behring] published a paper with the discovery of diphtheria antitoxin one week after Koch found out the resistance gained by vaccination from &#039;&#039;Diphtheria bacilli&#039;&#039;. This lead to elimination of the disease diphtheria in developing countries.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Von Behring received a Nobel Prize for the antitoxin which later would be known as antibodies against &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039;. The next vaccine made was one mixed of toxin and antitoxin. The antitoxin relieved the harmful effects of the toxin which was the real vaccine. This was later replaced in 1923 with a vaccine of a formaldehyde-treated Diphtheria toxin. Today in developing countries people get routine vaccinations so that diphtheria is unknown.&lt;br /&gt;
&lt;br /&gt;
== Structure ==&lt;br /&gt;
&lt;br /&gt;
Diphtheria toxin is a protein made of 535 amino acids and is 58kDa in weight. The [http://en.wikipedia.org/wiki/Zymogen proenzyme](zymogen) must be cleaved into fragments A &amp;amp; B and reduced in order for the toxicity gene to be turn on. In each fragment there are two &amp;lt;scene name=&#039;Sandbox_Reserved_486/Disulfide_bonds/1&#039;&amp;gt;Disulfide Bonds&amp;lt;/scene&amp;gt;. There are also three domains C,T, and R that have different functions. The first crystal structure of the toxin was obtained in 1992 by x-ray crystallography. However, the structure was a dimer and generated by freezing the protein. The dimer is non-toxic but becomes a toxic monomer at neutral pH by dissociation. The &amp;lt;scene name=&#039;Sandbox_Reserved_486/Secondary_structure/1&#039;&amp;gt;Secondary Structure&amp;lt;/scene&amp;gt; of the molecule is made up of 24 helices, 31 beta sheets, and turns between each of them which adds up to be 535 residue protein. This makes for a mixture of &amp;lt;scene name=&#039;Sandbox_Reserved_486/Hydrophobic_hydrophilic/1&#039;&amp;gt;hydrophilic and hydrophobic areas&amp;lt;/scene&amp;gt; that allow for the seondary structure. The purple portion of the molecule is the polar ares while the gray was the hydrophobic areas. &lt;br /&gt;
&lt;br /&gt;
*&amp;lt;scene name=&#039;Sandbox_Reserved_486/Fragment_a/1&#039;&amp;gt;Fragment A&amp;lt;/scene&amp;gt; is about molecular mass of 21kDa  and is the catalytically active portion of the protein. &lt;br /&gt;
*&amp;lt;scene name=&#039;Sandbox_Reserved_486/Fragment_b/1&#039;&amp;gt;Fragment B&amp;lt;/scene&amp;gt; is about 37kDa and contains the receptor binding &amp;amp; translocation portions of the protein.&lt;br /&gt;
&lt;br /&gt;
The two fragments are then separated into three domains C, T, and R which correspond to three major functions of the toxin.&lt;br /&gt;
&lt;br /&gt;
*In fragment A contains domain C which contains the &amp;lt;scene name=&#039;Sandbox_Reserved_486/Active_site/1&#039;&amp;gt;Active site&amp;lt;/scene&amp;gt; and does the catalysis for the protein. It contains eight β strands and seven α helices.&lt;br /&gt;
&lt;br /&gt;
*The T domain is found in fragment B and is the translocation portion of the protein. The structure is made up of three layers of α helices. The outer layer contains 3 helices that are rich in polar residues that allow for the molecule to maintain the T domain as well as keeping the toxin soluble in neutral pH. &lt;br /&gt;
&lt;br /&gt;
*Another domain in fragment B is domain R which has the &amp;lt;scene name=&#039;Sandbox_Reserved_486/Receptor_binding_site/1&#039;&amp;gt;Receptor binding site&amp;lt;/scene&amp;gt; for the protein. The domain consist mostly of β sheets and changes conformation when interacting with cell membranes. In the R domain both Lsy516 and Phe530 play a role in recognizing receptors on cell surfaces.&lt;br /&gt;
&lt;br /&gt;
In the mechanism for Diphtheria toxin the R Domain binds to &amp;lt;scene name=&#039;Sandbox_Reserved_486/Ligands/2&#039;&amp;gt;ligands&amp;lt;/scene&amp;gt; which are NAD&amp;lt;sup&amp;gt;+&amp;lt;/sup&amp;gt; which can sometimes be switched with ApUp. The molecule ApUp is bound to a cleft on the front side of the C domain. &lt;br /&gt;
&lt;br /&gt;
[[Image:Page41-2.jpg]] &amp;lt;ref&amp;gt;Parker, M. (1996). Protein toxin structure. (1 ed., pp. 25-43). Georgetown: R.G. Landes Company.&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Mechanism ==&lt;br /&gt;
&lt;br /&gt;
The mechanism begins by the R domain recognizing the target cells by the molecules on the cells surface. A prominent β-hairpin loop of the R domain binds to the surface and allows for a docking station. The ligand that is typically bound on the cell surface is pro-HB-EFG. Binding leads to receptor mediated endocytosis. The T domain translocates the C domain into the cytosol of the cell. The organism &#039;&#039;Corynebacterium diphtheriae&#039;&#039; first secretes the toxin the loop between the C and T domain has to be nicked in order for the toxicity to be turned on. There is one surface protease named [http://en.wikipedia.org/wiki/Furin furin] that is known to nick the area but it is unclear if any other protein helps the process. This process allows for the C domain to dissociate from the T domain after transported(translocated) into the cytosol. This is where the disulfide bonds become reduced. After this happens a drop in pH leads to the formation of the dimer to become an open monomer form. The reduction of the disulfide bonds is the rate determining step of the toxin entrying the cell.&lt;br /&gt;
&lt;br /&gt;
Once entried into the cytosol, the C domain does ADP-ribosylation of EF-2 at diphthamide, a posttranslationally modified histidine residue.  This shuts down all protein synthesis and kills the cell. The K&amp;lt;sub&amp;gt;cat&amp;lt;/sub&amp;gt;/K&amp;lt;sub&amp;gt;M&amp;lt;/sub&amp;gt; of the reaction is about 10&amp;lt;sup&amp;gt;8&amp;lt;/sup&amp;gt; min&amp;lt;sup&amp;gt;-1&amp;lt;/sup&amp;gt; M&amp;lt;sup&amp;gt;-1&amp;lt;/sup&amp;gt;. The figure below shows the reaction happening at the C domain. The C domain binds to the ligand NAD&amp;lt;sup&amp;gt;+&amp;lt;/sup&amp;gt; to begin the reaction. The C domian does have an inhibitor and that is ApUp which is near in the C domain.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[Image:Toxin-1.jpg]]  figure 3: Mechanism of inactivation of elongation factor 2 (EF2) by diphtheria toxin &amp;lt;ref&amp;gt;Stephen, J., &amp;amp; Pietrowski, R. (1981). Bacterial toxins. (1 ed., p. 11). Washington: Van Nostrand Reinhold Co. Ltd. &amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Medical Implications &amp;amp; Possible Application ==&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039; is the causative agent of the disease [http://en.wikipedia.org/wiki/Diphtheria Diphtheria]. The lethal dose for humans and other susceptible eukarya is .1μg of toxin per kg of body weight&amp;lt;ref&amp;gt;Oram , D., &amp;amp; Holmes, R. (2006). Diphtheria toxin. (3 ed., pp. 245-252). Burlington, San Diego, London: Academic Press publications.&amp;lt;/ref&amp;gt;  A vaccine has been made and is routinely used in first world countries as a basic immunization. The vaccine is made up of formaldehyde-treated Diphtheria toxin. However, Diphtheria toxin has been used is many other medical applications such as the drug [http://en.wikipedia.org/wiki/Denileukin_diftitox Denileukin diftitox] and cancer suppressors. Denileukin diftitox is a protein that combines &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039; and [http://en.wikipedia.org/wiki/Interleukin-2 Interleukin 2]. In some  Leukemias and Lymphomas cells express Interleukin receptors in which the drug can bind to and release the toxin within the cells.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Another application that &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039; can be used for is a cancer suppressor. In terms of the R domain of the protein which as we know binds to pro-HB-EFG receptors of the surface of cells and is translocated into the cell by endocytosis. Some scientist have made a non-toxic mutant of diphtheria toxin CRM197 which is being used to block the signaling activity of the receptor. In some cancers such as ovarian cancer, pro-HB-EFG is overexpressed and blocking the signal has shown promise in suppressing the effects of pro-HB-EFG on cancer development.&amp;lt;ref&amp;gt;Oram , D., &amp;amp; Holmes, R. (2006). Diphtheria toxin. (3 ed., pp. 245-252). Burlington, San Diego, London: Academic Press publications.&amp;lt;/ref&amp;gt; Another example, is called [http://en.wikipedia.org/wiki/Immunotoxin immunotoxins] which change the R domain to recognize a specific cell surface and kill that cell. This is being tested against different cancer cell types and has been successful.&lt;br /&gt;
&lt;br /&gt;
== References ==&lt;br /&gt;
* Parker, M. (1996). Protein toxin structure. (1 ed., pp. 25-43). Georgetown: R.G. Landes Company.&lt;br /&gt;
&lt;br /&gt;
*Bennett, M., &amp;amp; Eisenberg, D. (2009, febuary 24). The refined structure of monomeric diphtheria toxin at 2.3 angstroms resolution. Retrieved from http://www.pdb.org/pdb/explore/explore.do?&lt;br /&gt;
&lt;br /&gt;
* Stephen, J., &amp;amp; Pietrowski, R. (1981). Bacterial toxins. (1 ed., p. 11). Washington: Van Nostrand Reinhold Co. Ltd.&lt;br /&gt;
&lt;br /&gt;
* Oram , D., &amp;amp; Holmes, R. (2006). Diphtheria toxin. (3 ed., pp. 245-252). Burlington, San Diego, London: Academic Press publications.&lt;br /&gt;
&lt;br /&gt;
* Diphtheria toxin. (2011, November 25). Retrieved from &amp;lt;http://en.wikipedia.org/wiki/Diphtheria_toxin&amp;gt;&lt;br /&gt;
&lt;br /&gt;
* Murphy JR (1996). &amp;quot;Corynebacterium Diphtheriae: Diphtheria Toxin Production&amp;quot;. In Baron S et al.. Medical microbiology (4 ed.). Galveston, Texas: Univ. of Texas Medical Branch. ISBN 0-9631172-1-1.&lt;br /&gt;
&lt;br /&gt;
=== Footnotes ===&lt;br /&gt;
{{reflist}}&lt;/div&gt;</summary>
		<author><name>Brittany Smith</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_486&amp;diff=1601790</id>
		<title>Sandbox Reserved 486</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_486&amp;diff=1601790"/>
		<updated>2012-11-08T02:48:28Z</updated>

		<summary type="html">&lt;p&gt;Brittany Smith: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;[[Image:[[Image:Example.jpg]][[Image:[Example.jpg]]]]]&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Sandbox_Reserved_Robert_B_Rose_1}}&lt;br /&gt;
&amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
= Diphtheria toxin =&lt;br /&gt;
&#039;&#039;&#039;Diphtheria Toxin&#039;&#039;&#039; is an exotoxin produced by the organism [http://en.wikipedia.org/wiki/Corynebacterium_diphtheriae Corynebcterium diphtheria] which has been infected by a [http://en.wikipedia.org/wiki/Bacteriophage bacteriophage] that contains the Diphtheria toxin gene. The toxin is the causative agent of [http://en.wikipedia.org/wiki/Diphtheria diphtheria]. Symptoms for Diphtheria can range from a sore throat with low-grade fever and an adherent pseudomembrane of the tonsils, pharynx, or nose to  infected skin lesions which lack a characteristic appearance.&amp;lt;ref&amp;gt;http://www.cdc.gov/ncidod/dbmd/diseaseinfo/diptheria_t.htm &amp;lt;/ref&amp;gt; The toxin is distributed to distant organs by the circulatory system and may cause paralysis and congestive heart failure.&amp;lt;ref&amp;gt;http://www.ncbi.nlm.nih.gov/books/NBK7971/ &amp;lt;/ref&amp;gt;  The toxin attacks and kills eukaryotic cells by inactivating the [http://en.wikipedia.org/wiki/Elongation_factor Elongation factor] (&#039;&#039;&#039;EF-2&#039;&#039;&#039;) in translation. EF-2 allows for translocation of the peptidyl-tRNA from the A-site to the P-site, which in turn frees the A site for another aminoacyl-tRNA to bind. By inactivating the elongation factor 2 during translation the protein being made cannot be completed and therefore becomes nonfunctional. The toxin is in a &#039;&#039;&#039;class of A-B&#039;&#039;&#039; which includes cholera toxin, &#039;&#039;Escherichia coli&#039;&#039; heat labile enterotoxin, &#039;&#039;Pseudomonas aeruginosa&#039;&#039; exotoxin A, tetanus, botulinum neurotoxins, and Shiga toxin. A-B class is characterized by two functionally distinct components such as component A is the catalytic components while component B does the receptor binding function.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;Structure load=&#039;1mdt&#039; size=&#039;500&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;Diphtheria toxin structure&#039; scene=&#039;Insert optional scene name here&#039; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== History ==&lt;br /&gt;
Scientist have made efforts since at least the 1740&#039;s to find the caustion and cure for &#039;&#039;&#039;diphtheria toxin&#039;&#039;&#039;. It wasn&#039;t until Koch&#039;s devolpment of medical microbiology and [http://en.wikipedia.org/wiki/Koch&#039;s_postulates Koch&#039;s postulates] that it was even possible for progression towards understanding the molecular causes. It was later in Koch&#039;s laboratory that Friedrich Loeffler isolated a bacteria from a patient that died from &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039;. Koch and Friedrich later inoculated 23 guinea pigs with the isolated bacteria and they all died in two to five days. Loeffler had another observation that only the isolated bacteria from the pigs were growing at the site of inoculation. Therefore, he came to the conclusion that the bacteria isolated was the causation of the &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039;. In Pasture institute in Paris, both Emile Roux and Alexandre Yersin were able to isolate the toxin by growing a pure culture of &#039;&#039;Diphtheria bacilli&#039;&#039; and forcing them through a porcelain filter. This allowed to obtain no bacteria and only the toxin. The toxin was injected into laboratory animals and caused the same symptoms of &#039;&#039;Diphtheria bacilli&#039;&#039;. It wasn&#039;t until sixty-five years later that protein crystals were produced and the structure obtained. [http://en.wikipedia.org/wiki/Emil_Adolf_von_Behring Emil von Behring] published a paper with the discovery of diphtheria antitoxin one week after Koch found out the resistance gained by vaccination from &#039;&#039;Diphtheria bacilli&#039;&#039;. This lead to elimination of the disease diphtheria in developing countries.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Von Behring received a Nobel Prize for the antitoxin which later would be known as antibodies against &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039;. The next vaccine made was one mixed of toxin and antitoxin. The antitoxin relieved the harmful effects of the toxin which was the real vaccine. This was later replaced in 1923 with a vaccine of a formaldehyde-treated Diphtheria toxin. Today in developing countries people get routine vaccinations so that diphtheria is unknown.&lt;br /&gt;
&lt;br /&gt;
== Structure ==&lt;br /&gt;
&lt;br /&gt;
Diphtheria toxin is a protein made of 535 amino acids and is 58kDa in weight. The [http://en.wikipedia.org/wiki/Zymogen proenzyme](zymogen) must be cleaved into fragments A &amp;amp; B and reduced in order for the toxicity gene to be turn on. In each fragment there are two &amp;lt;scene name=&#039;Sandbox_Reserved_486/Disulfide_bonds/1&#039;&amp;gt;Disulfide Bonds&amp;lt;/scene&amp;gt;. There are also three domains C,T, and R that have different functions. The first crystal structure of the toxin was obtained in 1992 by x-ray crystallography. However, the structure was a dimer and generated by freezing the protein. The dimer is non-toxic but becomes a toxic monomer at neutral pH by dissociation. The &amp;lt;scene name=&#039;Sandbox_Reserved_486/Secondary_structure/1&#039;&amp;gt;Secondary Structure&amp;lt;/scene&amp;gt; of the molecule is made up of 24 helices, 31 beta sheets, and turns between each of them which adds up to be 535 residue protein. This makes for a mixture of &amp;lt;scene name=&#039;Sandbox_Reserved_486/Hydrophobic_hydrophilic/1&#039;&amp;gt;hydrophilic and hydrophobic areas&amp;lt;/scene&amp;gt; that allow for the seondary structure. The purple portion of the molecule is the polar ares while the gray was the hydrophobic areas. &lt;br /&gt;
&lt;br /&gt;
*&amp;lt;scene name=&#039;Sandbox_Reserved_486/Fragment_a/1&#039;&amp;gt;Fragment A&amp;lt;/scene&amp;gt; is about molecular mass of 21kDa  and is the catalytically active portion of the protein. &lt;br /&gt;
*&amp;lt;scene name=&#039;Sandbox_Reserved_486/Fragment_b/1&#039;&amp;gt;Fragment B&amp;lt;/scene&amp;gt; is about 37kDa and contains the receptor binding &amp;amp; translocation portions of the protein.&lt;br /&gt;
&lt;br /&gt;
The two fragments are then separated into three domains C, T, and R which correspond to three major functions of the toxin.&lt;br /&gt;
&lt;br /&gt;
*In fragment A contains domain C which contains the &amp;lt;scene name=&#039;Sandbox_Reserved_486/Active_site/1&#039;&amp;gt;Active site&amp;lt;/scene&amp;gt; and does the catalysis for the protein. It contains eight β strands and seven α helices.&lt;br /&gt;
&lt;br /&gt;
*The T domain is found in fragment B and is the translocation portion of the protein. The structure is made up of three layers of α helices. The outer layer contains 3 helices that are rich in polar residues that allow for the molecule to maintain the T domain as well as keeping the toxin soluble in neutral pH. &lt;br /&gt;
&lt;br /&gt;
*Another domain in fragment B is domain R which has the &amp;lt;scene name=&#039;Sandbox_Reserved_486/Receptor_binding_site/1&#039;&amp;gt;Receptor binding site&amp;lt;/scene&amp;gt; for the protein. The domain consist mostly of β sheets and changes conformation when interacting with cell membranes. In the R domain both Lsy516 and Phe530 play a role in recognizing receptors on cell surfaces.&lt;br /&gt;
&lt;br /&gt;
In the mechanism for Diphtheria toxin the R Domain binds to &amp;lt;scene name=&#039;Sandbox_Reserved_486/Ligands/2&#039;&amp;gt;ligands&amp;lt;/scene&amp;gt; which are NAD&amp;lt;sup&amp;gt;+&amp;lt;/sup&amp;gt; which can sometimes be switched with ApUp. The molecule ApUp is bound to a cleft on the front side of the C domain. &lt;br /&gt;
&lt;br /&gt;
[[Image:Page41-2.jpg]] &amp;lt;ref&amp;gt;Parker, M. (1996). Protein toxin structure. (1 ed., pp. 25-43). Georgetown: R.G. Landes Company.&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Mechanism ==&lt;br /&gt;
&lt;br /&gt;
The mechanism begins by the R domain recognizing the target cells by the molecules on the cells surface. A prominent β-hairpin loop of the R domain binds to the surface and allows for a docking station. The ligand that is typically bound on the cell surface is pro-HB-EFG. Binding leads to receptor mediated endocytosis. The T domain translocates the C domain into the cytosol of the cell. The organism &#039;&#039;Corynebacterium diphtheriae&#039;&#039; first secretes the toxin the loop between the C and T domain has to be nicked in order for the toxicity to be turned on. There is one surface protease named [http://en.wikipedia.org/wiki/Furin furin] that is known to nick the area but it is unclear if any other protein helps the process. This process allows for the C domain to dissociate from the T domain after transported(translocated) into the cytosol. This is where the disulfide bonds become reduced. After this happens a drop in pH leads to the formation of the dimer to become an open monomer form. The reduction of the disulfide bonds is the rate determining step of the toxin entrying the cell.&lt;br /&gt;
&lt;br /&gt;
Once entried into the cytosol, the C domain does ADP-ribosylation of EF-2 at diphthamide, a posttranslationally modified histidine residue.  This shuts down all protein synthesis and kills the cell. The K&amp;lt;sub&amp;gt;cat&amp;lt;/sub&amp;gt;/K&amp;lt;sub&amp;gt;M&amp;lt;/sub&amp;gt; of the reaction is about 10&amp;lt;sup&amp;gt;8&amp;lt;/sup&amp;gt; min&amp;lt;sup&amp;gt;-1&amp;lt;/sup&amp;gt; M&amp;lt;sup&amp;gt;-1&amp;lt;/sup&amp;gt;. The figure below shows the reaction happening at the C domain. The C domain binds to the ligand NAD&amp;lt;sup&amp;gt;+&amp;lt;/sup&amp;gt; to begin the reaction. The C domian does have an inhibitor and that is ApUp which is near in the C domain.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[Image:Toxin-1.jpg]]  figure 3: Mechanism of inactivation of elongation factor 2 (EF2) by diphtheria toxin &amp;lt;ref&amp;gt;Stephen, J., &amp;amp; Pietrowski, R. (1981). Bacterial toxins. (1 ed., p. 11). Washington: Van Nostrand Reinhold Co. Ltd. &amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Medical Implications &amp;amp; Possible Application ==&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039; is the causative agent of the disease [http://en.wikipedia.org/wiki/Diphtheria Diphtheria]. The lethal dose for humans and other susceptible eukarya is .1μg of toxin per kg of body weight&amp;lt;ref&amp;gt;Oram , D., &amp;amp; Holmes, R. (2006). Diphtheria toxin. (3 ed., pp. 245-252). Burlington, San Diego, London: Academic Press publications.&amp;lt;/ref&amp;gt;  A vaccine has been made and is routinely used in first world countries as a basic immunization. The vaccine is made up of formaldehyde-treated Diphtheria toxin. However, Diphtheria toxin has been used is many other medical applications such as the drug [http://en.wikipedia.org/wiki/Denileukin_diftitox Denileukin diftitox] and cancer suppressors. Denileukin diftitox is a protein that combines &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039; and [http://en.wikipedia.org/wiki/Interleukin-2 Interleukin 2]. In some  Leukemias and Lymphomas cells express Interleukin receptors in which the drug can bind to and release the toxin within the cells.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Another application that &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039; can be used for is a cancer suppressor. In terms of the R domain of the protein which as we know binds to pro-HB-EFG receptors of the surface of cells and is translocated into the cell by endocytosis. Some scientist have made a non-toxic mutant of diphtheria toxin CRM197 which is being used to block the signaling activity of the receptor. In some cancers such as ovarian cancer, pro-HB-EFG is overexpressed and blocking the signal has shown promise in suppressing the effects of pro-HB-EFG on cancer development.&amp;lt;ref&amp;gt;Oram , D., &amp;amp; Holmes, R. (2006). Diphtheria toxin. (3 ed., pp. 245-252). Burlington, San Diego, London: Academic Press publications.&amp;lt;/ref&amp;gt; Another example, is called [http://en.wikipedia.org/wiki/Immunotoxin immunotoxins] which change the R domain to recognize a specific cell surface and kill that cell. This is being tested against different cancer cell types and has been successful.&lt;br /&gt;
&lt;br /&gt;
== References ==&lt;br /&gt;
* Parker, M. (1996). Protein toxin structure. (1 ed., pp. 25-43). Georgetown: R.G. Landes Company.&lt;br /&gt;
&lt;br /&gt;
*Bennett, M., &amp;amp; Eisenberg, D. (2009, febuary 24). The refined structure of monomeric diphtheria toxin at 2.3 angstroms resolution. Retrieved from http://www.pdb.org/pdb/explore/explore.do?&lt;br /&gt;
&lt;br /&gt;
* Stephen, J., &amp;amp; Pietrowski, R. (1981). Bacterial toxins. (1 ed., p. 11). Washington: Van Nostrand Reinhold Co. Ltd.&lt;br /&gt;
&lt;br /&gt;
* Oram , D., &amp;amp; Holmes, R. (2006). Diphtheria toxin. (3 ed., pp. 245-252). Burlington, San Diego, London: Academic Press publications.&lt;br /&gt;
&lt;br /&gt;
* Diphtheria toxin. (2011, November 25). Retrieved from &amp;lt;http://en.wikipedia.org/wiki/Diphtheria_toxin&amp;gt;&lt;br /&gt;
&lt;br /&gt;
* Murphy JR (1996). &amp;quot;Corynebacterium Diphtheriae: Diphtheria Toxin Production&amp;quot;. In Baron S et al.. Medical microbiology (4 ed.). Galveston, Texas: Univ. of Texas Medical Branch. ISBN 0-9631172-1-1.&lt;br /&gt;
&lt;br /&gt;
=== Footnotes ===&lt;br /&gt;
{{reflist}}&lt;/div&gt;</summary>
		<author><name>Brittany Smith</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_486&amp;diff=1384432</id>
		<title>Sandbox Reserved 486</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_486&amp;diff=1384432"/>
		<updated>2012-05-02T15:42:24Z</updated>

		<summary type="html">&lt;p&gt;Brittany Smith: /* Structure */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Sandbox_Reserved_Robert_B_Rose_1}}&lt;br /&gt;
&amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
= Diphtheria toxin =&lt;br /&gt;
&#039;&#039;&#039;Diphtheria Toxin&#039;&#039;&#039; is an exotoxin produced by the organism [http://en.wikipedia.org/wiki/Corynebacterium_diphtheriae Corynebcterium diphtheria] which has been infected by a [http://en.wikipedia.org/wiki/Bacteriophage bacteriophage] that contains the Diphtheria toxin gene. The toxin is the causative agent of [http://en.wikipedia.org/wiki/Diphtheria diphtheria]. Symptoms for Diphtheria can range from a sore throat with low-grade fever and an adherent pseudomembrane of the tonsils, pharynx, or nose to  infected skin lesions which lack a characteristic appearance.&amp;lt;ref&amp;gt;http://www.cdc.gov/ncidod/dbmd/diseaseinfo/diptheria_t.htm &amp;lt;/ref&amp;gt; The toxin is distributed to distant organs by the circulatory system and may cause paralysis and congestive heart failure.&amp;lt;ref&amp;gt;http://www.ncbi.nlm.nih.gov/books/NBK7971/ &amp;lt;/ref&amp;gt;  The toxin attacks and kills eukaryotic cells by inactivating the [http://en.wikipedia.org/wiki/Elongation_factor Elongation factor] (&#039;&#039;&#039;EF-2&#039;&#039;&#039;) in translation. EF-2 allows for translocation of the peptidyl-tRNA from the A-site to the P-site, which in turn frees the A site for another aminoacyl-tRNA to bind. By inactivating the elongation factor 2 during translation the protein being made cannot be completed and therefore becomes nonfunctional. The toxin is in a &#039;&#039;&#039;class of A-B&#039;&#039;&#039; which includes cholera toxin, &#039;&#039;Escherichia coli&#039;&#039; heat labile enterotoxin, &#039;&#039;Pseudomonas aeruginosa&#039;&#039; exotoxin A, tetanus, botulinum neurotoxins, and Shiga toxin. A-B class is characterized by two functionally distinct components such as component A is the catalytic components while component B does the receptor binding function.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;Structure load=&#039;1mdt&#039; size=&#039;500&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;Diphtheria toxin structure&#039; scene=&#039;Insert optional scene name here&#039; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== History ==&lt;br /&gt;
Scientist have made efforts since at least the 1740&#039;s to find the caustion and cure for &#039;&#039;&#039;diphtheria toxin&#039;&#039;&#039;. It wasn&#039;t until Koch&#039;s devolpment of medical microbiology and [http://en.wikipedia.org/wiki/Koch&#039;s_postulates Koch&#039;s postulates] that it was even possible for progression towards understanding the molecular causes. It was later in Koch&#039;s laboratory that Friedrich Loeffler isolated a bacteria from a patient that died from &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039;. Koch and Friedrich later inoculated 23 guinea pigs with the isolated bacteria and they all died in two to five days. Loeffler had another observation that only the isolated bacteria from the pigs were growing at the site of inoculation. Therefore, he came to the conclusion that the bacteria isolated was the causation of the &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039;. In Pasture institute in Paris, both Emile Roux and Alexandre Yersin were able to isolate the toxin by growing a pure culture of &#039;&#039;Diphtheria bacilli&#039;&#039; and forcing them through a porcelain filter. This allowed to obtain no bacteria and only the toxin. The toxin was injected into laboratory animals and caused the same symptoms of &#039;&#039;Diphtheria bacilli&#039;&#039;. It wasn&#039;t until sixty-five years later that protein crystals were produced and the structure obtained. [http://en.wikipedia.org/wiki/Emil_Adolf_von_Behring Emil von Behring] published a paper with the discovery of diphtheria antitoxin one week after Koch found out the resistance gained by vaccination from &#039;&#039;Diphtheria bacilli&#039;&#039;. This lead to elimination of the disease diphtheria in developing countries.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Von Behring received a Nobel Prize for the antitoxin which later would be known as antibodies against &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039;. The next vaccine made was one mixed of toxin and antitoxin. The antitoxin relieved the harmful effects of the toxin which was the real vaccine. This was later replaced in 1923 with a vaccine of a formaldehyde-treated Diphtheria toxin. Today in developing countries people get routine vaccinations so that diphtheria is unknown.&lt;br /&gt;
&lt;br /&gt;
== Structure ==&lt;br /&gt;
&lt;br /&gt;
Diphtheria toxin is a protein made of 535 amino acids and is 58kDa in weight. The [http://en.wikipedia.org/wiki/Zymogen proenzyme](zymogen) must be cleaved into fragments A &amp;amp; B and reduced in order for the toxicity gene to be turn on. In each fragment there are two &amp;lt;scene name=&#039;Sandbox_Reserved_486/Disulfide_bonds/1&#039;&amp;gt;Disulfide Bonds&amp;lt;/scene&amp;gt;. There are also three domains C,T, and R that have different functions. The first crystal structure of the toxin was obtained in 1992 by x-ray crystallography. However, the structure was a dimer and generated by freezing the protein. The dimer is non-toxic but becomes a toxic monomer at neutral pH by dissociation. The &amp;lt;scene name=&#039;Sandbox_Reserved_486/Secondary_structure/1&#039;&amp;gt;Secondary Structure&amp;lt;/scene&amp;gt; of the molecule is made up of 24 helices, 31 beta sheets, and turns between each of them which adds up to be 535 residue protein. This makes for a mixture of &amp;lt;scene name=&#039;Sandbox_Reserved_486/Hydrophobic_hydrophilic/1&#039;&amp;gt;hydrophilic and hydrophobic areas&amp;lt;/scene&amp;gt; that allow for the seondary structure. The purple portion of the molecule is the polar ares while the gray was the hydrophobic areas. &lt;br /&gt;
&lt;br /&gt;
*&amp;lt;scene name=&#039;Sandbox_Reserved_486/Fragment_a/1&#039;&amp;gt;Fragment A&amp;lt;/scene&amp;gt; is about molecular mass of 21kDa  and is the catalytically active portion of the protein. &lt;br /&gt;
*&amp;lt;scene name=&#039;Sandbox_Reserved_486/Fragment_b/1&#039;&amp;gt;Fragment B&amp;lt;/scene&amp;gt; is about 37kDa and contains the receptor binding &amp;amp; translocation portions of the protein.&lt;br /&gt;
&lt;br /&gt;
The two fragments are then separated into three domains C, T, and R which correspond to three major functions of the toxin.&lt;br /&gt;
&lt;br /&gt;
*In fragment A contains domain C which contains the &amp;lt;scene name=&#039;Sandbox_Reserved_486/Active_site/1&#039;&amp;gt;Active site&amp;lt;/scene&amp;gt; and does the catalysis for the protein. It contains eight β strands and seven α helices.&lt;br /&gt;
&lt;br /&gt;
*The T domain is found in fragment B and is the translocation portion of the protein. The structure is made up of three layers of α helices. The outer layer contains 3 helices that are rich in polar residues that allow for the molecule to maintain the T domain as well as keeping the toxin soluble in neutral pH. &lt;br /&gt;
&lt;br /&gt;
*Another domain in fragment B is domain R which has the &amp;lt;scene name=&#039;Sandbox_Reserved_486/Receptor_binding_site/1&#039;&amp;gt;Receptor binding site&amp;lt;/scene&amp;gt; for the protein. The domain consist mostly of β sheets and changes conformation when interacting with cell membranes. In the R domain both Lsy516 and Phe530 play a role in recognizing receptors on cell surfaces.&lt;br /&gt;
&lt;br /&gt;
In the mechanism for Diphtheria toxin the R Domain binds to &amp;lt;scene name=&#039;Sandbox_Reserved_486/Ligands/2&#039;&amp;gt;ligands&amp;lt;/scene&amp;gt; which are NAD&amp;lt;sup&amp;gt;+&amp;lt;/sup&amp;gt; which can sometimes be switched with ApUp. The molecule ApUp is bound to a cleft on the front side of the C domain. &lt;br /&gt;
&lt;br /&gt;
[[Image:Page41-2.jpg]] &amp;lt;ref&amp;gt;Parker, M. (1996). Protein toxin structure. (1 ed., pp. 25-43). Georgetown: R.G. Landes Company.&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Mechanism ==&lt;br /&gt;
&lt;br /&gt;
The mechanism begins by the R domain recognizing the target cells by the molecules on the cells surface. A prominent β-hairpin loop of the R domain binds to the surface and allows for a docking station. The ligand that is typically bound on the cell surface is pro-HB-EFG. Binding leads to receptor mediated endocytosis. The T domain translocates the C domain into the cytosol of the cell. The organism &#039;&#039;Corynebacterium diphtheriae&#039;&#039; first secretes the toxin the loop between the C and T domain has to be nicked in order for the toxicity to be turned on. There is one surface protease named [http://en.wikipedia.org/wiki/Furin furin] that is known to nick the area but it is unclear if any other protein helps the process. This process allows for the C domain to dissociate from the T domain after transported(translocated) into the cytosol. This is where the disulfide bonds become reduced. After this happens a drop in pH leads to the formation of the dimer to become an open monomer form. The reduction of the disulfide bonds is the rate determining step of the toxin entrying the cell.&lt;br /&gt;
&lt;br /&gt;
Once entried into the cytosol, the C domain does ADP-ribosylation of EF-2 at diphthamide, a posttranslationally modified histidine residue.  This shuts down all protein synthesis and kills the cell. The K&amp;lt;sub&amp;gt;cat&amp;lt;/sub&amp;gt;/K&amp;lt;sub&amp;gt;M&amp;lt;/sub&amp;gt; of the reaction is about 10&amp;lt;sup&amp;gt;8&amp;lt;/sup&amp;gt; min&amp;lt;sup&amp;gt;-1&amp;lt;/sup&amp;gt; M&amp;lt;sup&amp;gt;-1&amp;lt;/sup&amp;gt;. The figure below shows the reaction happening at the C domain. The C domain binds to the ligand NAD&amp;lt;sup&amp;gt;+&amp;lt;/sup&amp;gt; to begin the reaction. The C domian does have an inhibitor and that is ApUp which is near in the C domain.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[Image:Toxin-1.jpg]]  figure 3: Mechanism of inactivation of elongation factor 2 (EF2) by diphtheria toxin &amp;lt;ref&amp;gt;Stephen, J., &amp;amp; Pietrowski, R. (1981). Bacterial toxins. (1 ed., p. 11). Washington: Van Nostrand Reinhold Co. Ltd. &amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Medical Implications &amp;amp; Possible Application ==&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039; is the causative agent of the disease [http://en.wikipedia.org/wiki/Diphtheria Diphtheria]. The lethal dose for humans and other susceptible eukarya is .1μg of toxin per kg of body weight&amp;lt;ref&amp;gt;Oram , D., &amp;amp; Holmes, R. (2006). Diphtheria toxin. (3 ed., pp. 245-252). Burlington, San Diego, London: Academic Press publications.&amp;lt;/ref&amp;gt;  A vaccine has been made and is routinely used in first world countries as a basic immunization. The vaccine is made up of formaldehyde-treated Diphtheria toxin. However, Diphtheria toxin has been used is many other medical applications such as the drug [http://en.wikipedia.org/wiki/Denileukin_diftitox Denileukin diftitox] and cancer suppressors. Denileukin diftitox is a protein that combines &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039; and [http://en.wikipedia.org/wiki/Interleukin-2 Interleukin 2]. In some  Leukemias and Lymphomas cells express Interleukin receptors in which the drug can bind to and release the toxin within the cells.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Another application that &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039; can be used for is a cancer suppressor. In terms of the R domain of the protein which as we know binds to pro-HB-EFG receptors of the surface of cells and is translocated into the cell by endocytosis. Some scientist have made a non-toxic mutant of diphtheria toxin CRM197 which is being used to block the signaling activity of the receptor. In some cancers such as ovarian cancer, pro-HB-EFG is overexpressed and blocking the signal has shown promise in suppressing the effects of pro-HB-EFG on cancer development.&amp;lt;ref&amp;gt;Oram , D., &amp;amp; Holmes, R. (2006). Diphtheria toxin. (3 ed., pp. 245-252). Burlington, San Diego, London: Academic Press publications.&amp;lt;/ref&amp;gt; Another example, is called [http://en.wikipedia.org/wiki/Immunotoxin immunotoxins] which change the R domain to recognize a specific cell surface and kill that cell. This is being tested against different cancer cell types and has been successful.&lt;br /&gt;
&lt;br /&gt;
== References ==&lt;br /&gt;
* Parker, M. (1996). Protein toxin structure. (1 ed., pp. 25-43). Georgetown: R.G. Landes Company.&lt;br /&gt;
&lt;br /&gt;
*Bennett, M., &amp;amp; Eisenberg, D. (2009, febuary 24). The refined structure of monomeric diphtheria toxin at 2.3 angstroms resolution. Retrieved from http://www.pdb.org/pdb/explore/explore.do?&lt;br /&gt;
&lt;br /&gt;
* Stephen, J., &amp;amp; Pietrowski, R. (1981). Bacterial toxins. (1 ed., p. 11). Washington: Van Nostrand Reinhold Co. Ltd.&lt;br /&gt;
&lt;br /&gt;
* Oram , D., &amp;amp; Holmes, R. (2006). Diphtheria toxin. (3 ed., pp. 245-252). Burlington, San Diego, London: Academic Press publications.&lt;br /&gt;
&lt;br /&gt;
* Diphtheria toxin. (2011, November 25). Retrieved from &amp;lt;http://en.wikipedia.org/wiki/Diphtheria_toxin&amp;gt;&lt;br /&gt;
&lt;br /&gt;
* Murphy JR (1996). &amp;quot;Corynebacterium Diphtheriae: Diphtheria Toxin Production&amp;quot;. In Baron S et al.. Medical microbiology (4 ed.). Galveston, Texas: Univ. of Texas Medical Branch. ISBN 0-9631172-1-1.&lt;br /&gt;
&lt;br /&gt;
=== Footnotes ===&lt;br /&gt;
{{reflist}}&lt;/div&gt;</summary>
		<author><name>Brittany Smith</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_486&amp;diff=1384431</id>
		<title>Sandbox Reserved 486</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_486&amp;diff=1384431"/>
		<updated>2012-05-02T15:41:23Z</updated>

		<summary type="html">&lt;p&gt;Brittany Smith: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Sandbox_Reserved_Robert_B_Rose_1}}&lt;br /&gt;
&amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
= Diphtheria toxin =&lt;br /&gt;
&#039;&#039;&#039;Diphtheria Toxin&#039;&#039;&#039; is an exotoxin produced by the organism [http://en.wikipedia.org/wiki/Corynebacterium_diphtheriae Corynebcterium diphtheria] which has been infected by a [http://en.wikipedia.org/wiki/Bacteriophage bacteriophage] that contains the Diphtheria toxin gene. The toxin is the causative agent of [http://en.wikipedia.org/wiki/Diphtheria diphtheria]. Symptoms for Diphtheria can range from a sore throat with low-grade fever and an adherent pseudomembrane of the tonsils, pharynx, or nose to  infected skin lesions which lack a characteristic appearance.&amp;lt;ref&amp;gt;http://www.cdc.gov/ncidod/dbmd/diseaseinfo/diptheria_t.htm &amp;lt;/ref&amp;gt; The toxin is distributed to distant organs by the circulatory system and may cause paralysis and congestive heart failure.&amp;lt;ref&amp;gt;http://www.ncbi.nlm.nih.gov/books/NBK7971/ &amp;lt;/ref&amp;gt;  The toxin attacks and kills eukaryotic cells by inactivating the [http://en.wikipedia.org/wiki/Elongation_factor Elongation factor] (&#039;&#039;&#039;EF-2&#039;&#039;&#039;) in translation. EF-2 allows for translocation of the peptidyl-tRNA from the A-site to the P-site, which in turn frees the A site for another aminoacyl-tRNA to bind. By inactivating the elongation factor 2 during translation the protein being made cannot be completed and therefore becomes nonfunctional. The toxin is in a &#039;&#039;&#039;class of A-B&#039;&#039;&#039; which includes cholera toxin, &#039;&#039;Escherichia coli&#039;&#039; heat labile enterotoxin, &#039;&#039;Pseudomonas aeruginosa&#039;&#039; exotoxin A, tetanus, botulinum neurotoxins, and Shiga toxin. A-B class is characterized by two functionally distinct components such as component A is the catalytic components while component B does the receptor binding function.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;Structure load=&#039;1mdt&#039; size=&#039;500&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;Diphtheria toxin structure&#039; scene=&#039;Insert optional scene name here&#039; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== History ==&lt;br /&gt;
Scientist have made efforts since at least the 1740&#039;s to find the caustion and cure for &#039;&#039;&#039;diphtheria toxin&#039;&#039;&#039;. It wasn&#039;t until Koch&#039;s devolpment of medical microbiology and [http://en.wikipedia.org/wiki/Koch&#039;s_postulates Koch&#039;s postulates] that it was even possible for progression towards understanding the molecular causes. It was later in Koch&#039;s laboratory that Friedrich Loeffler isolated a bacteria from a patient that died from &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039;. Koch and Friedrich later inoculated 23 guinea pigs with the isolated bacteria and they all died in two to five days. Loeffler had another observation that only the isolated bacteria from the pigs were growing at the site of inoculation. Therefore, he came to the conclusion that the bacteria isolated was the causation of the &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039;. In Pasture institute in Paris, both Emile Roux and Alexandre Yersin were able to isolate the toxin by growing a pure culture of &#039;&#039;Diphtheria bacilli&#039;&#039; and forcing them through a porcelain filter. This allowed to obtain no bacteria and only the toxin. The toxin was injected into laboratory animals and caused the same symptoms of &#039;&#039;Diphtheria bacilli&#039;&#039;. It wasn&#039;t until sixty-five years later that protein crystals were produced and the structure obtained. [http://en.wikipedia.org/wiki/Emil_Adolf_von_Behring Emil von Behring] published a paper with the discovery of diphtheria antitoxin one week after Koch found out the resistance gained by vaccination from &#039;&#039;Diphtheria bacilli&#039;&#039;. This lead to elimination of the disease diphtheria in developing countries.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Von Behring received a Nobel Prize for the antitoxin which later would be known as antibodies against &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039;. The next vaccine made was one mixed of toxin and antitoxin. The antitoxin relieved the harmful effects of the toxin which was the real vaccine. This was later replaced in 1923 with a vaccine of a formaldehyde-treated Diphtheria toxin. Today in developing countries people get routine vaccinations so that diphtheria is unknown.&lt;br /&gt;
&lt;br /&gt;
== Structure ==&lt;br /&gt;
&lt;br /&gt;
Diphtheria toxin is a protein made of 535 amino acids and is 58kDa in weight. The [http://en.wikipedia.org/wiki/Zymogen proenzyme](zymogen) must be cleaved into fragments A &amp;amp; B and reduced in order for the toxicity gene to be turn on. In each fragment there are two &amp;lt;scene name=&#039;Sandbox_Reserved_486/Disulfide_bonds/1&#039;&amp;gt;Disulfide Bonds&amp;lt;/scene&amp;gt;. There are also three domains C,T, and R that have different functions. The first crystal structure of the toxin was obtained in 1992 by x-ray crystallography. However, the structure was a dimer and generated by freezing the protein. The dimer is non-toxic but becomes a toxic monomer at neutral pH by dissociation. The &amp;lt;scene name=&#039;Sandbox_Reserved_486/Secondary_structure/1&#039;&amp;gt;Secondary Structure&amp;lt;/scene&amp;gt; of the molecule is made up of 24 helices, 31 beta sheets, and turns between each of them which adds up to be 535 residue protein. This makes for a mixture of &amp;lt;scene name=&#039;Sandbox_Reserved_486/Hydrophobic_hydrophilic/1&#039;&amp;gt;hydrophilic and hydrophobic areas&amp;lt;/scene&amp;gt; that allow for the seondary structure. The purple portion of the molecule is the polar ares while the gray was the hydrophobic areas. &lt;br /&gt;
&lt;br /&gt;
*&amp;lt;scene name=&#039;Sandbox_Reserved_486/Fragment_a/1&#039;&amp;gt;Fragment A&amp;lt;/scene&amp;gt; is about molecular mass of 21kDa  and is the catalytically active portion of the protein. &lt;br /&gt;
*&amp;lt;scene name=&#039;Sandbox_Reserved_486/Fragment_b/1&#039;&amp;gt;Fragment B&amp;lt;/scene&amp;gt; is about 37kDa and contains the receptor binding &amp;amp; translocation portions of the protein.&lt;br /&gt;
&lt;br /&gt;
The two fragments are then separated into three domains C, T, and R which correspond to three major functions of the toxin.&lt;br /&gt;
&lt;br /&gt;
*In fragment A contains domain C which contains the &amp;lt;scene name=&#039;Sandbox_Reserved_486/Active_site/1&#039;&amp;gt;Active site&amp;lt;/scene&amp;gt; and does the catalysis for the protein. It contains eight β strands and seven α helices.&lt;br /&gt;
&lt;br /&gt;
*The T domain is found in fragment B and is the translocation portion of the protein. The structure is made up of three layers of α helices. The outer layer contains 3 helices that are rich in polar residues that allow for the molecule to maintain the T domain as well as keeping the toxin soluble in neutral pH. &lt;br /&gt;
&lt;br /&gt;
*Another domain in fragment B is domain R which has the &amp;lt;scene name=&#039;Sandbox_Reserved_486/Receptor_binding_site/1&#039;&amp;gt;Receptor binding site&amp;lt;/scene&amp;gt; for the protein. The domain consist mostly of β sheets and changes conformation when interacting with cell membranes. In the R domain both Lsy516 and Phe530 play a role in recognizing receptors on cell surfaces.&lt;br /&gt;
&lt;br /&gt;
In the mechanism for Diphtheria toxin the R Domain binds to &amp;lt;scene name=&#039;Sandbox_Reserved_486/Ligands/2&#039;&amp;gt;ligands&amp;lt;/scene&amp;gt; which are NAD&amp;lt;sup&amp;gt;+&amp;lt;/sup&amp;gt; which can sometimes be switched with ApUp. The molecule ApUp is bound to a cleft on the front side of the C domain. &lt;br /&gt;
&lt;br /&gt;
[[Image:Page41-2.jpg]]&lt;br /&gt;
&lt;br /&gt;
== Mechanism ==&lt;br /&gt;
&lt;br /&gt;
The mechanism begins by the R domain recognizing the target cells by the molecules on the cells surface. A prominent β-hairpin loop of the R domain binds to the surface and allows for a docking station. The ligand that is typically bound on the cell surface is pro-HB-EFG. Binding leads to receptor mediated endocytosis. The T domain translocates the C domain into the cytosol of the cell. The organism &#039;&#039;Corynebacterium diphtheriae&#039;&#039; first secretes the toxin the loop between the C and T domain has to be nicked in order for the toxicity to be turned on. There is one surface protease named [http://en.wikipedia.org/wiki/Furin furin] that is known to nick the area but it is unclear if any other protein helps the process. This process allows for the C domain to dissociate from the T domain after transported(translocated) into the cytosol. This is where the disulfide bonds become reduced. After this happens a drop in pH leads to the formation of the dimer to become an open monomer form. The reduction of the disulfide bonds is the rate determining step of the toxin entrying the cell.&lt;br /&gt;
&lt;br /&gt;
Once entried into the cytosol, the C domain does ADP-ribosylation of EF-2 at diphthamide, a posttranslationally modified histidine residue.  This shuts down all protein synthesis and kills the cell. The K&amp;lt;sub&amp;gt;cat&amp;lt;/sub&amp;gt;/K&amp;lt;sub&amp;gt;M&amp;lt;/sub&amp;gt; of the reaction is about 10&amp;lt;sup&amp;gt;8&amp;lt;/sup&amp;gt; min&amp;lt;sup&amp;gt;-1&amp;lt;/sup&amp;gt; M&amp;lt;sup&amp;gt;-1&amp;lt;/sup&amp;gt;. The figure below shows the reaction happening at the C domain. The C domain binds to the ligand NAD&amp;lt;sup&amp;gt;+&amp;lt;/sup&amp;gt; to begin the reaction. The C domian does have an inhibitor and that is ApUp which is near in the C domain.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[Image:Toxin-1.jpg]]  figure 3: Mechanism of inactivation of elongation factor 2 (EF2) by diphtheria toxin &amp;lt;ref&amp;gt;Stephen, J., &amp;amp; Pietrowski, R. (1981). Bacterial toxins. (1 ed., p. 11). Washington: Van Nostrand Reinhold Co. Ltd. &amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Medical Implications &amp;amp; Possible Application ==&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039; is the causative agent of the disease [http://en.wikipedia.org/wiki/Diphtheria Diphtheria]. The lethal dose for humans and other susceptible eukarya is .1μg of toxin per kg of body weight&amp;lt;ref&amp;gt;Oram , D., &amp;amp; Holmes, R. (2006). Diphtheria toxin. (3 ed., pp. 245-252). Burlington, San Diego, London: Academic Press publications.&amp;lt;/ref&amp;gt;  A vaccine has been made and is routinely used in first world countries as a basic immunization. The vaccine is made up of formaldehyde-treated Diphtheria toxin. However, Diphtheria toxin has been used is many other medical applications such as the drug [http://en.wikipedia.org/wiki/Denileukin_diftitox Denileukin diftitox] and cancer suppressors. Denileukin diftitox is a protein that combines &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039; and [http://en.wikipedia.org/wiki/Interleukin-2 Interleukin 2]. In some  Leukemias and Lymphomas cells express Interleukin receptors in which the drug can bind to and release the toxin within the cells.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Another application that &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039; can be used for is a cancer suppressor. In terms of the R domain of the protein which as we know binds to pro-HB-EFG receptors of the surface of cells and is translocated into the cell by endocytosis. Some scientist have made a non-toxic mutant of diphtheria toxin CRM197 which is being used to block the signaling activity of the receptor. In some cancers such as ovarian cancer, pro-HB-EFG is overexpressed and blocking the signal has shown promise in suppressing the effects of pro-HB-EFG on cancer development.&amp;lt;ref&amp;gt;Oram , D., &amp;amp; Holmes, R. (2006). Diphtheria toxin. (3 ed., pp. 245-252). Burlington, San Diego, London: Academic Press publications.&amp;lt;/ref&amp;gt; Another example, is called [http://en.wikipedia.org/wiki/Immunotoxin immunotoxins] which change the R domain to recognize a specific cell surface and kill that cell. This is being tested against different cancer cell types and has been successful.&lt;br /&gt;
&lt;br /&gt;
== References ==&lt;br /&gt;
* Parker, M. (1996). Protein toxin structure. (1 ed., pp. 25-43). Georgetown: R.G. Landes Company.&lt;br /&gt;
&lt;br /&gt;
*Bennett, M., &amp;amp; Eisenberg, D. (2009, febuary 24). The refined structure of monomeric diphtheria toxin at 2.3 angstroms resolution. Retrieved from http://www.pdb.org/pdb/explore/explore.do?&lt;br /&gt;
&lt;br /&gt;
* Stephen, J., &amp;amp; Pietrowski, R. (1981). Bacterial toxins. (1 ed., p. 11). Washington: Van Nostrand Reinhold Co. Ltd.&lt;br /&gt;
&lt;br /&gt;
* Oram , D., &amp;amp; Holmes, R. (2006). Diphtheria toxin. (3 ed., pp. 245-252). Burlington, San Diego, London: Academic Press publications.&lt;br /&gt;
&lt;br /&gt;
* Diphtheria toxin. (2011, November 25). Retrieved from &amp;lt;http://en.wikipedia.org/wiki/Diphtheria_toxin&amp;gt;&lt;br /&gt;
&lt;br /&gt;
* Murphy JR (1996). &amp;quot;Corynebacterium Diphtheriae: Diphtheria Toxin Production&amp;quot;. In Baron S et al.. Medical microbiology (4 ed.). Galveston, Texas: Univ. of Texas Medical Branch. ISBN 0-9631172-1-1.&lt;br /&gt;
&lt;br /&gt;
=== Footnotes ===&lt;br /&gt;
{{reflist}}&lt;/div&gt;</summary>
		<author><name>Brittany Smith</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_486&amp;diff=1384421</id>
		<title>Sandbox Reserved 486</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_486&amp;diff=1384421"/>
		<updated>2012-05-02T15:32:26Z</updated>

		<summary type="html">&lt;p&gt;Brittany Smith: /* Mechanism */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Sandbox_Reserved_Robert_B_Rose_1}}&lt;br /&gt;
&amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
= Diphtheria toxin =&lt;br /&gt;
&#039;&#039;&#039;Diphtheria Toxin&#039;&#039;&#039; is an exotoxin produced by the organism [http://en.wikipedia.org/wiki/Corynebacterium_diphtheriae Corynebcterium diphtheria] which has been infected by a [http://en.wikipedia.org/wiki/Bacteriophage bacteriophage] that contains the Diphtheria toxin gene. The toxin is the causative agent of [http://en.wikipedia.org/wiki/Diphtheria diphtheria]. Symptoms for Diphtheria can range from a sore throat with low-grade fever and an adherent pseudomembrane of the tonsils, pharynx, or nose to  infected skin lesions which lack a characteristic appearance.&amp;lt;ref&amp;gt;http://www.cdc.gov/ncidod/dbmd/diseaseinfo/diptheria_t.htm &amp;lt;/ref&amp;gt; The toxin is distributed to distant organs by the circulatory system and may cause paralysis and congestive heart failure.&amp;lt;ref&amp;gt;http://www.ncbi.nlm.nih.gov/books/NBK7971/ &amp;lt;/ref&amp;gt;  The toxin attacks and kills eukaryotic cells by inactivating the [http://en.wikipedia.org/wiki/Elongation_factor Elongation factor] (&#039;&#039;&#039;EF-2&#039;&#039;&#039;) in translation. EF-2 allows for translocation of the peptidyl-tRNA from the A-site to the P-site, which in turn frees the A site for another aminoacyl-tRNA to bind. By inactivating the elongation factor 2 during translation the protein being made cannot be completed and therefore becomes nonfunctional. The toxin is in a &#039;&#039;&#039;class of A-B&#039;&#039;&#039; which includes cholera toxin, &#039;&#039;Escherichia coli&#039;&#039; heat labile enterotoxin, &#039;&#039;Pseudomonas aeruginosa&#039;&#039; exotoxin A, tetanus, botulinum neurotoxins, and Shiga toxin. A-B class is characterized by two functionally distinct components such as component A is the catalytic components while component B does the receptor binding function.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;Structure load=&#039;1mdt&#039; size=&#039;500&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;Diphtheria toxin structure&#039; scene=&#039;Insert optional scene name here&#039; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== History ==&lt;br /&gt;
Scientist have made efforts since at least the 1740&#039;s to find the caustion and cure for &#039;&#039;&#039;diphtheria toxin&#039;&#039;&#039;. It wasn&#039;t until Koch&#039;s devolpment of medical microbiology and [http://en.wikipedia.org/wiki/Koch&#039;s_postulates Koch&#039;s postulates] that it was even possible for progression towards understanding the molecular causes. It was later in Koch&#039;s laboratory that Friedrich Loeffler isolated a bacteria from a patient that died from &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039;. Koch and Friedrich later inoculated 23 guinea pigs with the isolated bacteria and they all died in two to five days. Loeffler had another observation that only the isolated bacteria from the pigs were growing at the site of inoculation. Therefore, he came to the conclusion that the bacteria isolated was the causation of the &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039;. In Pasture institute in Paris, both Emile Roux and Alexandre Yersin were able to isolate the toxin by growing a pure culture of &#039;&#039;Diphtheria bacilli&#039;&#039; and forcing them through a porcelain filter. This allowed to obtain no bacteria and only the toxin. The toxin was injected into laboratory animals and caused the same symptoms of &#039;&#039;Diphtheria bacilli&#039;&#039;. It wasn&#039;t until sixty-five years later that protein crystals were produced and the structure obtained. [http://en.wikipedia.org/wiki/Emil_Adolf_von_Behring Emil von Behring] published a paper with the discovery of diphtheria antitoxin one week after Koch found out the resistance gained by vaccination from &#039;&#039;Diphtheria bacilli&#039;&#039;. This lead to elimination of the disease diphtheria in developing countries.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Von Behring received a Nobel Prize for the antitoxin which later would be known as antibodies against &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039;. The next vaccine made was one mixed of toxin and antitoxin. The antitoxin relieved the harmful effects of the toxin which was the real vaccine. This was later replaced in 1923 with a vaccine of a formaldehyde-treated Diphtheria toxin. Today in developing countries people get routine vaccinations so that diphtheria is unknown.&lt;br /&gt;
&lt;br /&gt;
== Structure ==&lt;br /&gt;
&lt;br /&gt;
Diphtheria toxin is a protein made of 535 amino acids and is 58kDa in weight. The [http://en.wikipedia.org/wiki/Zymogen proenzyme](zymogen) must be cleaved into fragments A &amp;amp; B and reduced in order for the toxicity gene to be turn on. In each fragment there are two &amp;lt;scene name=&#039;Sandbox_Reserved_486/Disulfide_bonds/1&#039;&amp;gt;Disulfide Bonds&amp;lt;/scene&amp;gt;. There are also three domains C,T, and R that have different functions. The first crystal structure of the toxin was obtained in 1992 by x-ray crystallography. However, the structure was a dimer and generated by freezing the protein. The dimer is non-toxic but becomes a toxic monomer at neutral pH by dissociation. The &amp;lt;scene name=&#039;Sandbox_Reserved_486/Secondary_structure/1&#039;&amp;gt;Secondary Structure&amp;lt;/scene&amp;gt; of the molecule is made up of 24 helices, 31 beta sheets, and turns between each of them which adds up to be 535 residue protein. This makes for a mixture of &amp;lt;scene name=&#039;Sandbox_Reserved_486/Hydrophobic_hydrophilic/1&#039;&amp;gt;hydrophilic and hydrophobic areas&amp;lt;/scene&amp;gt; that allow for the seondary structure. The purple portion of the molecule is the polar ares while the gray was the hydrophobic areas. &lt;br /&gt;
&lt;br /&gt;
*&amp;lt;scene name=&#039;Sandbox_Reserved_486/Fragment_a/1&#039;&amp;gt;Fragment A&amp;lt;/scene&amp;gt; is about molecular mass of 21kDa  and is the catalytically active portion of the protein. &lt;br /&gt;
*&amp;lt;scene name=&#039;Sandbox_Reserved_486/Fragment_b/1&#039;&amp;gt;Fragment B&amp;lt;/scene&amp;gt; is about 37kDa and contains the receptor binding &amp;amp; translocation portions of the protein.&lt;br /&gt;
&lt;br /&gt;
The two fragments are then separated into three domains C, T, and R which correspond to three major functions of the toxin.&lt;br /&gt;
&lt;br /&gt;
*In fragment A contains domain C which contains the &amp;lt;scene name=&#039;Sandbox_Reserved_486/Active_site/1&#039;&amp;gt;Active site&amp;lt;/scene&amp;gt; and does the catalysis for the protein. It contains eight β strands and seven α helices.&lt;br /&gt;
&lt;br /&gt;
*The T domain is found in fragment B and is the translocation portion of the protein. The structure is made up of three layers of α helices. The outer layer contains 3 helices that are rich in polar residues that allow for the molecule to maintain the T domain as well as keeping the toxin soluble in neutral pH. &lt;br /&gt;
&lt;br /&gt;
*Another domain in fragment B is domain R which has the &amp;lt;scene name=&#039;Sandbox_Reserved_486/Receptor_binding_site/1&#039;&amp;gt;Receptor binding site&amp;lt;/scene&amp;gt; for the protein. The domain consist mostly of β sheets and changes conformation when interacting with cell membranes. In the R domain both Lsy516 and Phe530 play a role in recognizing receptors on cell surfaces.&lt;br /&gt;
&lt;br /&gt;
In the mechanism for Diphtheria toxin the R Domain binds to &amp;lt;scene name=&#039;Sandbox_Reserved_486/Ligands/2&#039;&amp;gt;ligands&amp;lt;/scene&amp;gt; which are NAD&amp;lt;sup&amp;gt;+&amp;lt;/sup&amp;gt; which can sometimes be switched with ApUp. The molecule ApUp is bound to a cleft on the front side of the C domain. &lt;br /&gt;
&lt;br /&gt;
[[Image:Page41-2.jpg]]&lt;br /&gt;
&lt;br /&gt;
== Mechanism ==&lt;br /&gt;
&lt;br /&gt;
The mechanism begins by the R domain recognizing the target cells by the molecules on the cells surface. A prominent β-hairpin loop of the R domain binds to the surface and allows for a docking station. The ligand that is typically bound on the cell surface is pro- Binding leads to receptor mediated endocytosis. The T domain translocates the C domain into the cytosol of the cell. The organism &#039;&#039;Corynebacterium diphtheriae&#039;&#039; first secretes the toxin the loop between the C and T domain has to be nicked in order for the toxicity to be turned on. There is one surface protease named [http://en.wikipedia.org/wiki/Furin furin] that is known to nick the area but it is unclear if any other protein helps the process. This process allows for the C domain to dissociate from the T domain after transported(translocated) into the cytosol. This is where the disulfide bonds become reduced. After this happens a drop in pH leads to the formation of the dimer to become an open monomer form. The reduction of the disulfide bonds is the rate determining step of the toxin entrying the cell.&lt;br /&gt;
&lt;br /&gt;
Once entried into the cytosol, the C domain does ADP-ribosylation of EF-2 at diphthamide, a posttranslationally modified histidine residue.  This shuts down all protein synthesis and kills the cell. The K&amp;lt;sub&amp;gt;cat&amp;lt;/sub&amp;gt;/K&amp;lt;sub&amp;gt;M&amp;lt;/sub&amp;gt; of the reaction is about 10&amp;lt;sup&amp;gt;8&amp;lt;/sup&amp;gt; min&amp;lt;sup&amp;gt;-1&amp;lt;/sup&amp;gt; M&amp;lt;sup&amp;gt;-1&amp;lt;/sup&amp;gt;. The figure below shows the reaction happening at the C domain.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[Image:Toxin-1.jpg]]  figure 3: Mechanism of inactivation of elongation factor 2 (EF2) by diphtheria toxin &amp;lt;ref&amp;gt;Stephen, J., &amp;amp; Pietrowski, R. (1981). Bacterial toxins. (1 ed., p. 11). Washington: Van Nostrand Reinhold Co. Ltd. &amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Medical Implications &amp;amp; Possible Application ==&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039; is the causative agent of the disease [http://en.wikipedia.org/wiki/Diphtheria Diphtheria]. The lethal dose for humans and other susceptible eukarya is .1μg of toxin per kg of body weight&amp;lt;ref&amp;gt;Oram , D., &amp;amp; Holmes, R. (2006). Diphtheria toxin. (3 ed., pp. 245-252). Burlington, San Diego, London: Academic Press publications.&amp;lt;/ref&amp;gt;  A vaccine has been made and is routinely used in first world countries as a basic immunization. The vaccine is made up of formaldehyde-treated Diphtheria toxin. However, Diphtheria toxin has been used is many other medical applications such as the drug [http://en.wikipedia.org/wiki/Denileukin_diftitox Denileukin diftitox] and cancer suppressors. Denileukin diftitox is a protein that combines &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039; and [http://en.wikipedia.org/wiki/Interleukin-2 Interleukin 2]. In some  Leukemias and Lymphomas cells express Interleukin receptors in which the drug can bind to and release the toxin within the cells.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Another application that &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039; can be used for is a cancer suppressor. In terms of the R domain of the protein which as we know binds to pro-HB-EFG receptors of the surface of cells and is translocated into the cell by endocytosis. Some scientist have made a non-toxic mutant of diphtheria toxin CRM197 which is being used to block the signaling activity of the receptor. In some cancers such as ovarian cancer, pro-HB-EFG is overexpressed and blocking the signal has shown promise in suppressing the effects of pro-HB-EFG on cancer development.&amp;lt;ref&amp;gt;Oram , D., &amp;amp; Holmes, R. (2006). Diphtheria toxin. (3 ed., pp. 245-252). Burlington, San Diego, London: Academic Press publications.&amp;lt;/ref&amp;gt; Another example, is called [http://en.wikipedia.org/wiki/Immunotoxin immunotoxins] which change the R domain to recognize a specific cell surface and kill that cell. This is being tested against different cancer cell types and has been successful.&lt;br /&gt;
&lt;br /&gt;
== References ==&lt;br /&gt;
* Parker, M. (1996). Protein toxin structure. (1 ed., pp. 25-43). Georgetown: R.G. Landes Company.&lt;br /&gt;
&lt;br /&gt;
*Bennett, M., &amp;amp; Eisenberg, D. (2009, febuary 24). The refined structure of monomeric diphtheria toxin at 2.3 angstroms resolution. Retrieved from http://www.pdb.org/pdb/explore/explore.do?&lt;br /&gt;
&lt;br /&gt;
* Stephen, J., &amp;amp; Pietrowski, R. (1981). Bacterial toxins. (1 ed., p. 11). Washington: Van Nostrand Reinhold Co. Ltd.&lt;br /&gt;
&lt;br /&gt;
* Oram , D., &amp;amp; Holmes, R. (2006). Diphtheria toxin. (3 ed., pp. 245-252). Burlington, San Diego, London: Academic Press publications.&lt;br /&gt;
&lt;br /&gt;
* Diphtheria toxin. (2011, November 25). Retrieved from &amp;lt;http://en.wikipedia.org/wiki/Diphtheria_toxin&amp;gt;&lt;br /&gt;
&lt;br /&gt;
* Murphy JR (1996). &amp;quot;Corynebacterium Diphtheriae: Diphtheria Toxin Production&amp;quot;. In Baron S et al.. Medical microbiology (4 ed.). Galveston, Texas: Univ. of Texas Medical Branch. ISBN 0-9631172-1-1.&lt;br /&gt;
&lt;br /&gt;
=== Footnotes ===&lt;br /&gt;
{{reflist}}&lt;/div&gt;</summary>
		<author><name>Brittany Smith</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_486&amp;diff=1384418</id>
		<title>Sandbox Reserved 486</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_486&amp;diff=1384418"/>
		<updated>2012-05-02T15:27:42Z</updated>

		<summary type="html">&lt;p&gt;Brittany Smith: /* Mechanism */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Sandbox_Reserved_Robert_B_Rose_1}}&lt;br /&gt;
&amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
= Diphtheria toxin =&lt;br /&gt;
&#039;&#039;&#039;Diphtheria Toxin&#039;&#039;&#039; is an exotoxin produced by the organism [http://en.wikipedia.org/wiki/Corynebacterium_diphtheriae Corynebcterium diphtheria] which has been infected by a [http://en.wikipedia.org/wiki/Bacteriophage bacteriophage] that contains the Diphtheria toxin gene. The toxin is the causative agent of [http://en.wikipedia.org/wiki/Diphtheria diphtheria]. Symptoms for Diphtheria can range from a sore throat with low-grade fever and an adherent pseudomembrane of the tonsils, pharynx, or nose to  infected skin lesions which lack a characteristic appearance.&amp;lt;ref&amp;gt;http://www.cdc.gov/ncidod/dbmd/diseaseinfo/diptheria_t.htm &amp;lt;/ref&amp;gt; The toxin is distributed to distant organs by the circulatory system and may cause paralysis and congestive heart failure.&amp;lt;ref&amp;gt;http://www.ncbi.nlm.nih.gov/books/NBK7971/ &amp;lt;/ref&amp;gt;  The toxin attacks and kills eukaryotic cells by inactivating the [http://en.wikipedia.org/wiki/Elongation_factor Elongation factor] (&#039;&#039;&#039;EF-2&#039;&#039;&#039;) in translation. EF-2 allows for translocation of the peptidyl-tRNA from the A-site to the P-site, which in turn frees the A site for another aminoacyl-tRNA to bind. By inactivating the elongation factor 2 during translation the protein being made cannot be completed and therefore becomes nonfunctional. The toxin is in a &#039;&#039;&#039;class of A-B&#039;&#039;&#039; which includes cholera toxin, &#039;&#039;Escherichia coli&#039;&#039; heat labile enterotoxin, &#039;&#039;Pseudomonas aeruginosa&#039;&#039; exotoxin A, tetanus, botulinum neurotoxins, and Shiga toxin. A-B class is characterized by two functionally distinct components such as component A is the catalytic components while component B does the receptor binding function.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;Structure load=&#039;1mdt&#039; size=&#039;500&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;Diphtheria toxin structure&#039; scene=&#039;Insert optional scene name here&#039; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== History ==&lt;br /&gt;
Scientist have made efforts since at least the 1740&#039;s to find the caustion and cure for &#039;&#039;&#039;diphtheria toxin&#039;&#039;&#039;. It wasn&#039;t until Koch&#039;s devolpment of medical microbiology and [http://en.wikipedia.org/wiki/Koch&#039;s_postulates Koch&#039;s postulates] that it was even possible for progression towards understanding the molecular causes. It was later in Koch&#039;s laboratory that Friedrich Loeffler isolated a bacteria from a patient that died from &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039;. Koch and Friedrich later inoculated 23 guinea pigs with the isolated bacteria and they all died in two to five days. Loeffler had another observation that only the isolated bacteria from the pigs were growing at the site of inoculation. Therefore, he came to the conclusion that the bacteria isolated was the causation of the &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039;. In Pasture institute in Paris, both Emile Roux and Alexandre Yersin were able to isolate the toxin by growing a pure culture of &#039;&#039;Diphtheria bacilli&#039;&#039; and forcing them through a porcelain filter. This allowed to obtain no bacteria and only the toxin. The toxin was injected into laboratory animals and caused the same symptoms of &#039;&#039;Diphtheria bacilli&#039;&#039;. It wasn&#039;t until sixty-five years later that protein crystals were produced and the structure obtained. [http://en.wikipedia.org/wiki/Emil_Adolf_von_Behring Emil von Behring] published a paper with the discovery of diphtheria antitoxin one week after Koch found out the resistance gained by vaccination from &#039;&#039;Diphtheria bacilli&#039;&#039;. This lead to elimination of the disease diphtheria in developing countries.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Von Behring received a Nobel Prize for the antitoxin which later would be known as antibodies against &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039;. The next vaccine made was one mixed of toxin and antitoxin. The antitoxin relieved the harmful effects of the toxin which was the real vaccine. This was later replaced in 1923 with a vaccine of a formaldehyde-treated Diphtheria toxin. Today in developing countries people get routine vaccinations so that diphtheria is unknown.&lt;br /&gt;
&lt;br /&gt;
== Structure ==&lt;br /&gt;
&lt;br /&gt;
Diphtheria toxin is a protein made of 535 amino acids and is 58kDa in weight. The [http://en.wikipedia.org/wiki/Zymogen proenzyme](zymogen) must be cleaved into fragments A &amp;amp; B and reduced in order for the toxicity gene to be turn on. In each fragment there are two &amp;lt;scene name=&#039;Sandbox_Reserved_486/Disulfide_bonds/1&#039;&amp;gt;Disulfide Bonds&amp;lt;/scene&amp;gt;. There are also three domains C,T, and R that have different functions. The first crystal structure of the toxin was obtained in 1992 by x-ray crystallography. However, the structure was a dimer and generated by freezing the protein. The dimer is non-toxic but becomes a toxic monomer at neutral pH by dissociation. The &amp;lt;scene name=&#039;Sandbox_Reserved_486/Secondary_structure/1&#039;&amp;gt;Secondary Structure&amp;lt;/scene&amp;gt; of the molecule is made up of 24 helices, 31 beta sheets, and turns between each of them which adds up to be 535 residue protein. This makes for a mixture of &amp;lt;scene name=&#039;Sandbox_Reserved_486/Hydrophobic_hydrophilic/1&#039;&amp;gt;hydrophilic and hydrophobic areas&amp;lt;/scene&amp;gt; that allow for the seondary structure. The purple portion of the molecule is the polar ares while the gray was the hydrophobic areas. &lt;br /&gt;
&lt;br /&gt;
*&amp;lt;scene name=&#039;Sandbox_Reserved_486/Fragment_a/1&#039;&amp;gt;Fragment A&amp;lt;/scene&amp;gt; is about molecular mass of 21kDa  and is the catalytically active portion of the protein. &lt;br /&gt;
*&amp;lt;scene name=&#039;Sandbox_Reserved_486/Fragment_b/1&#039;&amp;gt;Fragment B&amp;lt;/scene&amp;gt; is about 37kDa and contains the receptor binding &amp;amp; translocation portions of the protein.&lt;br /&gt;
&lt;br /&gt;
The two fragments are then separated into three domains C, T, and R which correspond to three major functions of the toxin.&lt;br /&gt;
&lt;br /&gt;
*In fragment A contains domain C which contains the &amp;lt;scene name=&#039;Sandbox_Reserved_486/Active_site/1&#039;&amp;gt;Active site&amp;lt;/scene&amp;gt; and does the catalysis for the protein. It contains eight β strands and seven α helices.&lt;br /&gt;
&lt;br /&gt;
*The T domain is found in fragment B and is the translocation portion of the protein. The structure is made up of three layers of α helices. The outer layer contains 3 helices that are rich in polar residues that allow for the molecule to maintain the T domain as well as keeping the toxin soluble in neutral pH. &lt;br /&gt;
&lt;br /&gt;
*Another domain in fragment B is domain R which has the &amp;lt;scene name=&#039;Sandbox_Reserved_486/Receptor_binding_site/1&#039;&amp;gt;Receptor binding site&amp;lt;/scene&amp;gt; for the protein. The domain consist mostly of β sheets and changes conformation when interacting with cell membranes. In the R domain both Lsy516 and Phe530 play a role in recognizing receptors on cell surfaces.&lt;br /&gt;
&lt;br /&gt;
In the mechanism for Diphtheria toxin the R Domain binds to &amp;lt;scene name=&#039;Sandbox_Reserved_486/Ligands/2&#039;&amp;gt;ligands&amp;lt;/scene&amp;gt; which are NAD&amp;lt;sup&amp;gt;+&amp;lt;/sup&amp;gt; which can sometimes be switched with ApUp. The molecule ApUp is bound to a cleft on the front side of the C domain. &lt;br /&gt;
&lt;br /&gt;
[[Image:Page41-2.jpg]]&lt;br /&gt;
&lt;br /&gt;
== Mechanism ==&lt;br /&gt;
&lt;br /&gt;
The mechanism begins by the R domain recognizing the target cells by the molecules on the cells surface. A prominent β-hairpin loop of the R domain binds to the surface and allows for a docking station. Binding leads to receptor mediated endocytosis. The T domain translocates the C domain into the cytosol of the cell. The organism &#039;&#039;Corynebacterium diphtheriae&#039;&#039; first secretes the toxin the loop between the C and T domain has to be nicked in order for the toxicity to be turned on. There is one surface protease named [http://en.wikipedia.org/wiki/Furin furin] that is known to nick the area but it is unclear if any other protein helps the process. This process allows for the C domain to dissociate from the T domain after transported(translocated) into the cytosol. This is where the disulfide bonds become reduced. After this happens a drop in pH leads to the formation of the dimer to become an open monomer form. The reduction of the disulfide bonds is the rate determining step of the toxin entrying the cell.&lt;br /&gt;
&lt;br /&gt;
Once entried into the cytosol, the C domain does ADP-ribosylation of EF-2 at diphthamide, a posttranslationally modified histidine residue.  This shuts down all protein synthesis and kills the cell. The K&amp;lt;sub&amp;gt;cat&amp;lt;/sub&amp;gt;/K&amp;lt;sub&amp;gt;M&amp;lt;/sub&amp;gt; of the reaction is about 10&amp;lt;sup&amp;gt;8&amp;lt;/sup&amp;gt; min&amp;lt;sup&amp;gt;-1&amp;lt;/sup&amp;gt; M&amp;lt;sup&amp;gt;-1&amp;lt;/sup&amp;gt;. The figure below shows the reaction happening at the C domain.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[Image:Toxin-1.jpg]]  figure 3: Mechanism of inactivation of elongation factor 2 (EF2) by diphtheria toxin &amp;lt;ref&amp;gt;Stephen, J., &amp;amp; Pietrowski, R. (1981). Bacterial toxins. (1 ed., p. 11). Washington: Van Nostrand Reinhold Co. Ltd. &amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Medical Implications &amp;amp; Possible Application ==&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039; is the causative agent of the disease [http://en.wikipedia.org/wiki/Diphtheria Diphtheria]. The lethal dose for humans and other susceptible eukarya is .1μg of toxin per kg of body weight&amp;lt;ref&amp;gt;Oram , D., &amp;amp; Holmes, R. (2006). Diphtheria toxin. (3 ed., pp. 245-252). Burlington, San Diego, London: Academic Press publications.&amp;lt;/ref&amp;gt;  A vaccine has been made and is routinely used in first world countries as a basic immunization. The vaccine is made up of formaldehyde-treated Diphtheria toxin. However, Diphtheria toxin has been used is many other medical applications such as the drug [http://en.wikipedia.org/wiki/Denileukin_diftitox Denileukin diftitox] and cancer suppressors. Denileukin diftitox is a protein that combines &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039; and [http://en.wikipedia.org/wiki/Interleukin-2 Interleukin 2]. In some  Leukemias and Lymphomas cells express Interleukin receptors in which the drug can bind to and release the toxin within the cells.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Another application that &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039; can be used for is a cancer suppressor. In terms of the R domain of the protein which as we know binds to pro-HB-EFG receptors of the surface of cells and is translocated into the cell by endocytosis. Some scientist have made a non-toxic mutant of diphtheria toxin CRM197 which is being used to block the signaling activity of the receptor. In some cancers such as ovarian cancer, pro-HB-EFG is overexpressed and blocking the signal has shown promise in suppressing the effects of pro-HB-EFG on cancer development.&amp;lt;ref&amp;gt;Oram , D., &amp;amp; Holmes, R. (2006). Diphtheria toxin. (3 ed., pp. 245-252). Burlington, San Diego, London: Academic Press publications.&amp;lt;/ref&amp;gt; Another example, is called [http://en.wikipedia.org/wiki/Immunotoxin immunotoxins] which change the R domain to recognize a specific cell surface and kill that cell. This is being tested against different cancer cell types and has been successful.&lt;br /&gt;
&lt;br /&gt;
== References ==&lt;br /&gt;
* Parker, M. (1996). Protein toxin structure. (1 ed., pp. 25-43). Georgetown: R.G. Landes Company.&lt;br /&gt;
&lt;br /&gt;
*Bennett, M., &amp;amp; Eisenberg, D. (2009, febuary 24). The refined structure of monomeric diphtheria toxin at 2.3 angstroms resolution. Retrieved from http://www.pdb.org/pdb/explore/explore.do?&lt;br /&gt;
&lt;br /&gt;
* Stephen, J., &amp;amp; Pietrowski, R. (1981). Bacterial toxins. (1 ed., p. 11). Washington: Van Nostrand Reinhold Co. Ltd.&lt;br /&gt;
&lt;br /&gt;
* Oram , D., &amp;amp; Holmes, R. (2006). Diphtheria toxin. (3 ed., pp. 245-252). Burlington, San Diego, London: Academic Press publications.&lt;br /&gt;
&lt;br /&gt;
* Diphtheria toxin. (2011, November 25). Retrieved from &amp;lt;http://en.wikipedia.org/wiki/Diphtheria_toxin&amp;gt;&lt;br /&gt;
&lt;br /&gt;
* Murphy JR (1996). &amp;quot;Corynebacterium Diphtheriae: Diphtheria Toxin Production&amp;quot;. In Baron S et al.. Medical microbiology (4 ed.). Galveston, Texas: Univ. of Texas Medical Branch. ISBN 0-9631172-1-1.&lt;br /&gt;
&lt;br /&gt;
=== Footnotes ===&lt;br /&gt;
{{reflist}}&lt;/div&gt;</summary>
		<author><name>Brittany Smith</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_486&amp;diff=1384399</id>
		<title>Sandbox Reserved 486</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_486&amp;diff=1384399"/>
		<updated>2012-05-02T15:03:48Z</updated>

		<summary type="html">&lt;p&gt;Brittany Smith: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Sandbox_Reserved_Robert_B_Rose_1}}&lt;br /&gt;
&amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
= Diphtheria toxin =&lt;br /&gt;
&#039;&#039;&#039;Diphtheria Toxin&#039;&#039;&#039; is an exotoxin produced by the organism [http://en.wikipedia.org/wiki/Corynebacterium_diphtheriae Corynebcterium diphtheria] which has been infected by a [http://en.wikipedia.org/wiki/Bacteriophage bacteriophage] that contains the Diphtheria toxin gene. The toxin is the causative agent of [http://en.wikipedia.org/wiki/Diphtheria diphtheria]. Symptoms for Diphtheria can range from a sore throat with low-grade fever and an adherent pseudomembrane of the tonsils, pharynx, or nose to  infected skin lesions which lack a characteristic appearance.&amp;lt;ref&amp;gt;http://www.cdc.gov/ncidod/dbmd/diseaseinfo/diptheria_t.htm &amp;lt;/ref&amp;gt; The toxin is distributed to distant organs by the circulatory system and may cause paralysis and congestive heart failure.&amp;lt;ref&amp;gt;http://www.ncbi.nlm.nih.gov/books/NBK7971/ &amp;lt;/ref&amp;gt;  The toxin attacks and kills eukaryotic cells by inactivating the [http://en.wikipedia.org/wiki/Elongation_factor Elongation factor] (&#039;&#039;&#039;EF-2&#039;&#039;&#039;) in translation. EF-2 allows for translocation of the peptidyl-tRNA from the A-site to the P-site, which in turn frees the A site for another aminoacyl-tRNA to bind. By inactivating the elongation factor 2 during translation the protein being made cannot be completed and therefore becomes nonfunctional. The toxin is in a &#039;&#039;&#039;class of A-B&#039;&#039;&#039; which includes cholera toxin, &#039;&#039;Escherichia coli&#039;&#039; heat labile enterotoxin, &#039;&#039;Pseudomonas aeruginosa&#039;&#039; exotoxin A, tetanus, botulinum neurotoxins, and Shiga toxin. A-B class is characterized by two functionally distinct components such as component A is the catalytic components while component B does the receptor binding function.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;Structure load=&#039;1mdt&#039; size=&#039;500&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;Diphtheria toxin structure&#039; scene=&#039;Insert optional scene name here&#039; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== History ==&lt;br /&gt;
Scientist have made efforts since at least the 1740&#039;s to find the caustion and cure for &#039;&#039;&#039;diphtheria toxin&#039;&#039;&#039;. It wasn&#039;t until Koch&#039;s devolpment of medical microbiology and [http://en.wikipedia.org/wiki/Koch&#039;s_postulates Koch&#039;s postulates] that it was even possible for progression towards understanding the molecular causes. It was later in Koch&#039;s laboratory that Friedrich Loeffler isolated a bacteria from a patient that died from &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039;. Koch and Friedrich later inoculated 23 guinea pigs with the isolated bacteria and they all died in two to five days. Loeffler had another observation that only the isolated bacteria from the pigs were growing at the site of inoculation. Therefore, he came to the conclusion that the bacteria isolated was the causation of the &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039;. In Pasture institute in Paris, both Emile Roux and Alexandre Yersin were able to isolate the toxin by growing a pure culture of &#039;&#039;Diphtheria bacilli&#039;&#039; and forcing them through a porcelain filter. This allowed to obtain no bacteria and only the toxin. The toxin was injected into laboratory animals and caused the same symptoms of &#039;&#039;Diphtheria bacilli&#039;&#039;. It wasn&#039;t until sixty-five years later that protein crystals were produced and the structure obtained. [http://en.wikipedia.org/wiki/Emil_Adolf_von_Behring Emil von Behring] published a paper with the discovery of diphtheria antitoxin one week after Koch found out the resistance gained by vaccination from &#039;&#039;Diphtheria bacilli&#039;&#039;. This lead to elimination of the disease diphtheria in developing countries.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Von Behring received a Nobel Prize for the antitoxin which later would be known as antibodies against &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039;. The next vaccine made was one mixed of toxin and antitoxin. The antitoxin relieved the harmful effects of the toxin which was the real vaccine. This was later replaced in 1923 with a vaccine of a formaldehyde-treated Diphtheria toxin. Today in developing countries people get routine vaccinations so that diphtheria is unknown.&lt;br /&gt;
&lt;br /&gt;
== Structure ==&lt;br /&gt;
&lt;br /&gt;
Diphtheria toxin is a protein made of 535 amino acids and is 58kDa in weight. The [http://en.wikipedia.org/wiki/Zymogen proenzyme](zymogen) must be cleaved into fragments A &amp;amp; B and reduced in order for the toxicity gene to be turn on. In each fragment there are two &amp;lt;scene name=&#039;Sandbox_Reserved_486/Disulfide_bonds/1&#039;&amp;gt;Disulfide Bonds&amp;lt;/scene&amp;gt;. There are also three domains C,T, and R that have different functions. The first crystal structure of the toxin was obtained in 1992 by x-ray crystallography. However, the structure was a dimer and generated by freezing the protein. The dimer is non-toxic but becomes a toxic monomer at neutral pH by dissociation. The &amp;lt;scene name=&#039;Sandbox_Reserved_486/Secondary_structure/1&#039;&amp;gt;Secondary Structure&amp;lt;/scene&amp;gt; of the molecule is made up of 24 helices, 31 beta sheets, and turns between each of them which adds up to be 535 residue protein. This makes for a mixture of &amp;lt;scene name=&#039;Sandbox_Reserved_486/Hydrophobic_hydrophilic/1&#039;&amp;gt;hydrophilic and hydrophobic areas&amp;lt;/scene&amp;gt; that allow for the seondary structure. The purple portion of the molecule is the polar ares while the gray was the hydrophobic areas. &lt;br /&gt;
&lt;br /&gt;
*&amp;lt;scene name=&#039;Sandbox_Reserved_486/Fragment_a/1&#039;&amp;gt;Fragment A&amp;lt;/scene&amp;gt; is about molecular mass of 21kDa  and is the catalytically active portion of the protein. &lt;br /&gt;
*&amp;lt;scene name=&#039;Sandbox_Reserved_486/Fragment_b/1&#039;&amp;gt;Fragment B&amp;lt;/scene&amp;gt; is about 37kDa and contains the receptor binding &amp;amp; translocation portions of the protein.&lt;br /&gt;
&lt;br /&gt;
The two fragments are then separated into three domains C, T, and R which correspond to three major functions of the toxin.&lt;br /&gt;
&lt;br /&gt;
*In fragment A contains domain C which contains the &amp;lt;scene name=&#039;Sandbox_Reserved_486/Active_site/1&#039;&amp;gt;Active site&amp;lt;/scene&amp;gt; and does the catalysis for the protein. It contains eight β strands and seven α helices.&lt;br /&gt;
&lt;br /&gt;
*The T domain is found in fragment B and is the translocation portion of the protein. The structure is made up of three layers of α helices. The outer layer contains 3 helices that are rich in polar residues that allow for the molecule to maintain the T domain as well as keeping the toxin soluble in neutral pH. &lt;br /&gt;
&lt;br /&gt;
*Another domain in fragment B is domain R which has the &amp;lt;scene name=&#039;Sandbox_Reserved_486/Receptor_binding_site/1&#039;&amp;gt;Receptor binding site&amp;lt;/scene&amp;gt; for the protein. The domain consist mostly of β sheets and changes conformation when interacting with cell membranes. In the R domain both Lsy516 and Phe530 play a role in recognizing receptors on cell surfaces.&lt;br /&gt;
&lt;br /&gt;
In the mechanism for Diphtheria toxin the R Domain binds to &amp;lt;scene name=&#039;Sandbox_Reserved_486/Ligands/2&#039;&amp;gt;ligands&amp;lt;/scene&amp;gt; which are NAD&amp;lt;sup&amp;gt;+&amp;lt;/sup&amp;gt; which can sometimes be switched with ApUp. The molecule ApUp is bound to a cleft on the front side of the C domain. &lt;br /&gt;
&lt;br /&gt;
[[Image:Page41-2.jpg]]&lt;br /&gt;
&lt;br /&gt;
== Mechanism ==&lt;br /&gt;
&lt;br /&gt;
The mechanism begins by the R domain recognizing the target cells by the molecules on the cells surface. A prominent β-hairpin loop of the R domain binds to the surface and allows for a docking station. Binding leads to receptor mediated endocytosis. The T domain translocates the C domain into the cytosol of the cell. The organism &#039;&#039;Corynebacterium diphtheriae&#039;&#039; first secretes the toxin the loop between the C and T domain has to be nicked in order for the toxicity to be turned on. There is one surface protease named [http://en.wikipedia.org/wiki/Furin furin] that is known to nick the area but it is unclear if any other protein helps the process. This process allows for the C domain to dissociate from the T domain after transported(translocated) into the cytosol. This is where the disulfide bonds become reduced. &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[Image:Toxin-1.jpg]]  figure 3: Mechanism of inactivation of elongation factor 2 (EF2) by diphtheria toxin &amp;lt;ref&amp;gt;Stephen, J., &amp;amp; Pietrowski, R. (1981). Bacterial toxins. (1 ed., p. 11). Washington: Van Nostrand Reinhold Co. Ltd. &amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Medical Implications &amp;amp; Possible Application ==&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039; is the causative agent of the disease [http://en.wikipedia.org/wiki/Diphtheria Diphtheria]. The lethal dose for humans and other susceptible eukarya is .1μg of toxin per kg of body weight&amp;lt;ref&amp;gt;Oram , D., &amp;amp; Holmes, R. (2006). Diphtheria toxin. (3 ed., pp. 245-252). Burlington, San Diego, London: Academic Press publications.&amp;lt;/ref&amp;gt;  A vaccine has been made and is routinely used in first world countries as a basic immunization. The vaccine is made up of formaldehyde-treated Diphtheria toxin. However, Diphtheria toxin has been used is many other medical applications such as the drug [http://en.wikipedia.org/wiki/Denileukin_diftitox Denileukin diftitox] and cancer suppressors. Denileukin diftitox is a protein that combines &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039; and [http://en.wikipedia.org/wiki/Interleukin-2 Interleukin 2]. In some  Leukemias and Lymphomas cells express Interleukin receptors in which the drug can bind to and release the toxin within the cells.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Another application that &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039; can be used for is a cancer suppressor. In terms of the R domain of the protein which as we know binds to pro-HB-EFG receptors of the surface of cells and is translocated into the cell by endocytosis. Some scientist have made a non-toxic mutant of diphtheria toxin CRM197 which is being used to block the signaling activity of the receptor. In some cancers such as ovarian cancer, pro-HB-EFG is overexpressed and blocking the signal has shown promise in suppressing the effects of pro-HB-EFG on cancer development.&amp;lt;ref&amp;gt;Oram , D., &amp;amp; Holmes, R. (2006). Diphtheria toxin. (3 ed., pp. 245-252). Burlington, San Diego, London: Academic Press publications.&amp;lt;/ref&amp;gt; Another example, is called [http://en.wikipedia.org/wiki/Immunotoxin immunotoxins] which change the R domain to recognize a specific cell surface and kill that cell. This is being tested against different cancer cell types and has been successful.&lt;br /&gt;
&lt;br /&gt;
== References ==&lt;br /&gt;
* Parker, M. (1996). Protein toxin structure. (1 ed., pp. 25-43). Georgetown: R.G. Landes Company.&lt;br /&gt;
&lt;br /&gt;
*Bennett, M., &amp;amp; Eisenberg, D. (2009, febuary 24). The refined structure of monomeric diphtheria toxin at 2.3 angstroms resolution. Retrieved from http://www.pdb.org/pdb/explore/explore.do?&lt;br /&gt;
&lt;br /&gt;
* Stephen, J., &amp;amp; Pietrowski, R. (1981). Bacterial toxins. (1 ed., p. 11). Washington: Van Nostrand Reinhold Co. Ltd.&lt;br /&gt;
&lt;br /&gt;
* Oram , D., &amp;amp; Holmes, R. (2006). Diphtheria toxin. (3 ed., pp. 245-252). Burlington, San Diego, London: Academic Press publications.&lt;br /&gt;
&lt;br /&gt;
* Diphtheria toxin. (2011, November 25). Retrieved from &amp;lt;http://en.wikipedia.org/wiki/Diphtheria_toxin&amp;gt;&lt;br /&gt;
&lt;br /&gt;
* Murphy JR (1996). &amp;quot;Corynebacterium Diphtheriae: Diphtheria Toxin Production&amp;quot;. In Baron S et al.. Medical microbiology (4 ed.). Galveston, Texas: Univ. of Texas Medical Branch. ISBN 0-9631172-1-1.&lt;br /&gt;
&lt;br /&gt;
=== Footnotes ===&lt;br /&gt;
{{reflist}}&lt;/div&gt;</summary>
		<author><name>Brittany Smith</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_471&amp;diff=1384394</id>
		<title>Sandbox Reserved 471</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_471&amp;diff=1384394"/>
		<updated>2012-05-02T14:53:37Z</updated>

		<summary type="html">&lt;p&gt;Brittany Smith: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;Structure load=&#039;3hbt&#039; size=&#039;500&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;Actin&#039; scene=&#039;Insert optional scene name here&#039; /&amp;gt; &amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Sandbox_Reserved_Robert_B_Rose_1}}&lt;br /&gt;
&amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Introduction ==&lt;br /&gt;
Actin is a spherical 43 kilo-Dalton protein that is found in many cell types. It belongs to the class of proteins known as [http://en.wikipedia.org/wiki/Motor_proteins motor proteins]. Motor proteins function in the movement of substances across a substrate by utilizing [http://en.wikipedia.org/wiki/Adenosine_triphosphate ATP] as an energy source. It is one of the most highly conserved proteins differing by no more than 20% in species ranging from yeast to humans. (&amp;quot;Mediation, Modulation and Consequences of Membrane-Cytoskeleton Interactions&amp;quot;.) In an alignment of the 81 unique actin protein sequences, scientists found that 17.4% of positions in the consensus sequence are invariant in all actins, 35.6 % of positions are invariant or have a difference in only one of the 81 actins, and 40.4% of positions are invariant or have what are considered conservative changes (Review Article Molecular genetics of actin function)   &lt;br /&gt;
Actin is the monomeric subunit of microfilaments, one of the three key components of the [http://en.wikipedia.org/wiki/Cytoskeleton cytoskeleton] and thin filaments, which is part of the contractile unit in muscle cells. The cytoskeleton is a three-dimensional complex of filamentous protein that creates the shape and structure of cells, as well as fills in the gaps between organelles. This is what provides the cells with motility. There are three main proteins that make up the cytoskeleton. They are microfilaments, intermediate filaments and microtubules.  (http://www.bms.ed.ac.uk/research/others/smaciver/lectures/Cs1.htm&lt;br /&gt;
An Introduction to the Cytoskeleton. CS1) Actin exists in two forms, the monomeric, globular form (G-actin) and the polymeric, filamentous form (F-actin). (Conformational Dynamics of Actin: Effectors and Implications for Biological Function)In vertebrates there are three main groups of actin isoforms which include alpha, beta, and gamma. These isotypes (α, β and γ), show &amp;gt;90% amino-acid homology between isotypes and &amp;gt;98% homology within members of a particular isotypic group. (http://www.cytoskeleton.com/actin?gclid=CNyRpoPC3a8CFeUEQAodTFkoCg)  The alpha actins, found in muscle tissues, are a major constituent of the contractile apparatus. The beta and gamma actins coexist in most cell types as components of the cytoskeleton, and as mediators of internal cell motility.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
=History=&lt;br /&gt;
&lt;br /&gt;
In 1942, [http://en.wikipedia.org/wiki/Brun%C3%B3_Ferenc_Straub Bruno Ferenc Straub] isolated actin as a water soluble component of muscle acetone powder. He found that at increased ionic strength the G-actin molecules would come together to form the F-actin filament. Actin was later found in non-muscle cells and its structure was seen through the use of [http://en.wikipedia.org/wiki/Immunofluorescence_microscopy immunofluorescence microscopy]. The next major accomplishment came with the discovery of the amino acid sequence. This allowed researchers to locate chemical and enzymatic alterations and to study how they affected the properties of the molecule. The high conservation of actin’s structure throughout various species was discovered through [http://en.wikipedia.org/wiki/Immunofluorescence_microscopy comparative sequence analysis]. In 1950, Straub reported that actin contained bound ATP and that during the polymerization of the monomers into microfilaments, the ATP was hydrolyzed to ADP and inorganic phosphate. (Straub FB, Feuer G (1989). &amp;quot;Adenosinetriphosphate. The functional group of actin. 1950&amp;quot;. Biochim. Biophys. Acta 1000: 180–95.PMID 2673365.) His discovery led to his suggestion that ATP-bound actin transforming into ADP-bound actin was what created muscle contractions. In the early 1980’s the principles of actin polymerization were exposed and the first actin-binding proteins (ABPs) were characterized according to their in vivo and in vitro functions. In 1990, the crystal structure of G-actin was solved by Kabsch. (Kabsch W, Mannherz HG, Suck D, Pai EF, Holmes KC (September 1990). &amp;quot;Atomic structure of the actin:DNase I complex&amp;quot;. Nature 347 (6288): 37–44. doi:10.1038/347037a0. PMID 2395459.) In this same year a model of F-actin was suggested by Holmes et al. The model was created by fitting a helix of G-actin structures according to low-resolution fiber diffraction data from the F-actin. ( Holmes KC, Popp D, Gebhard W, Kabsch W (September 1990). &amp;quot;Atomic model of the actin filament&amp;quot;. Nature 347 (6288): 44–9.doi:10.1038/347044a0. PMID 2395461.) Further advances in cryoelectron microscopy allowed scientists to find the binding sites for myosin and tropomyosin. A combination of [http://en.wikipedia.org/wiki/X-ray_crystallography X-ray crystallography] with fiber diffraction led to an atomic model of F-actin. (Structure and Function of Actin by Wolfgang Kabsch) After some debate actin also became generally accepted as an important structural and functional component of the cell nucleus (Conformational Dynamics of Actin: Effectors and Implications for Biological Function) Since this pioneering work by Straub, interest in actin has increased tremendously and so has the realization of how complex its structure is.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
=Structure=&lt;br /&gt;
&lt;br /&gt;
[[Image:Actin Image.gif]]&lt;br /&gt;
&lt;br /&gt;
Actin exists in both its monomeric (globular, G-actin) and polymeric (filamentous or F-actin) form. The actin monomer is approximately pear shaped. Actin is composed of 376 residues that are folded into two large domains, each comprised of two subdomains. Its secondary structure is 41% helical (22 helices; 153 residues) and 20% beta sheet (20 strands; 77 residues). (PDB) The actin filament is a double-stranded, right-handed helix with a half-pitch of 37 nm and a one-start left-handed genetic helix with a rise of 2.75 nm per monomer. The width of the filament is within the range of 7–10 nm. (Conformational Dynamics of Actin: Effectors and Implications for Biological Function) The large domains are organized to form a hinged molecule with a deep cleft. Subdomains 1 and 3 are structurally related, whereas subdomains 2 and 4 can be viewed as large insertions into subdomains 1 and 3, respectively. There is moderately little contact between the two major domains of actin; the polypeptide chain passes twice between these domains at the loop centered at residue Lys336 and at the linker helix Gln137-Ser145, which functions as the hinge axis between the domains. As a result, two clefts are formed between the domains. Within the upper cleft are the cofactors, an adenine nucleotide and a divalent metal ion, usually magnesium. It is thought that the cofactors interact with the domains on either side, increasing their connectivity. The lower cleft between domains 1 and 3 is lined by residues Tyr143, Ala144, Gly146, Thr148, Gly168, Ile341, Ile345, Leu346, Leu349, Thr351, and Met355, which are predominantly hydrophobic. This cleft constitutes the major binding site for most ABPs, and is thus called the targetbinding or hydrophobic cleft. (Actin Structure and Function). Most of the interaction that occur in the subunit are electrostatic in character but there are also hydrophobic interactions.  (Actin Structure and Function)&lt;br /&gt;
Under physiologic conditions, G-actin is transformed to F-actin by ATP. After G-actin is bound to an ATP molecule it can then bind to another ATP bound monomer to form an unstable dimer. It can then add a third ATP bound monomer to create a stable trimer that serves as a basis for building fibrous actin (F-actin). Once the F-actin is formed the ATP can be hydrolyzed, keeping the bound ADP and releasing an inorganic phosphate. The polymer can undergo a process known as treadmilling. This is where the polymer continuously grows at its positive end but disassembles at its negative end. This process requires a permanent source of energy such as ATP (Walter F., PhD. Boron (2003) Medical Physiology: A Cellular And Molecular Approaoch Elsevier/Saunders, pp. 1,300 ISBN:1-4160-2328-3. Page 28) &lt;br /&gt;
Unlike G-actin, F-actin does not form crystalline arrays that can be analyzed by X-ray crystallography. Instead it can be found by using fiber diffraction, electron-microscopy data and mathematical models. The structure can then be refined and remodeled as necessary. (ACTIN: General Principles from Studies in Yeast) The first high-resolution structural model of the actin filament was at a resolution of 8 A ˚ and was proposed by Holmes et al., 1990. Recently, an improved high-resolution F-actin model was created by Oda et al., 2009 with a resolution of 3.3 A ˚ in the radial and 5.6 A ˚ in the equatorial directions. &lt;br /&gt;
Vertebrates express three main actin isoforms, including three α-isoforms of skeletal, cardiac, and smooth muscles and the β- and γ- isoforms expressed in nonmuscle and muscle cells. Actin isoforms are different in a few of its amino acids, with most variations occurring toward the N terminus. Actin also undergoes various forms of posttranslational modifications. For instance, His73 of skeletal muscle α-actin is methylated, the N-terminal methionine and cysteine residues are acetylated and cleaved, and the resulting N-terminal aspartic acid is then re-acetylated. Since the original determination of the crystal structure of G-actin, over 80 structures of actin have been reported.  The majority of these structures have been obtained as complexes with actin-binding proteins (ABPs). (Actin Structure and Function)&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
=Mechanism of Action=&lt;br /&gt;
&lt;br /&gt;
Polymerization mechanism&lt;br /&gt;
At increased ionic strength, G-actin molecules polymerize into filaments, known as F-actin. F-actin is the main component of the thin filaments in sarcomeres of muscle cells. Muscle sarcomeres use ATP hydrolysis to produce conrtractions by sliding the thin actin filament&lt;br /&gt;
past thick myosin filaments. The entire process is initiated by the slow formation of actin dimmers and trimers. These serve as a base for filament elongation. During elongation more actin monomers associate to than dissociate from either of the two ends, which results in the net growth of both filament ends. The steady-state phase is characterised by a dynamic equilibrium where the length of the actin filaments remains constant. This means while monomers are associating, other monomers are dissociating from the ends. In this dynamic equilibrium a stationery population of free actin monomers is established and is called the critical concentration. The polarity of the ends of the actin filaments play a key role in elongation. The ends of the filament are referred to as &amp;quot;barbed&amp;quot; and &amp;quot;pointed&amp;quot; according to the polarity of the arrowhead-like structure generated on binding with myosin subfragment 1. ) (Structure and Function of Actin by Wolfgang Kabsch) The barbed or plus end binds actin monomers faster than the pointed or minus end. Although its ATPase activity is not crucial for actin polymerisation, actin self-assembly is associated with the ATPase cycle, which powers this treadmilling process (Conformational Dynamics of Actin: Effectors and Implications for Biological Function) After the actin molecule is changed into a filament, the bound ATP is hydrolysed to ADP and inorganic phosphate is realeased. (Structure and Function of Actin by Wolfgang Kabsch) The formation of the F-actin is what stimulates the actin ATPase. The release of the  inorganic phosphate happens more slowly than the formation of the filament so that the growing filament has a cap of ATPactin at its barbed end, while monomers containing ADP and inorganic phosphate accumulate in the rest of the filament.&lt;br /&gt;
&lt;br /&gt;
[[Image:Filament_formation.png]] [[Image:Treadmilling.gif]] &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
The mature filament contains only ADP-actin. The tendency of actin to polymerize depends upon the affinity of actin monomers for filament ends. There is an actin monomer concentration below which actin will not polymerize known as the Critical Concentration (CC). At monomer concentrations above the CC, the actin will polymerize until the free monomer concentration is equal to the CC. (http://www.ncbi.nlm.nih.gov/books/NBK28299/) It is thought that the strong binding to the ATP is due to the amide proton of a serine 14 amino acid forming hydrogen bonds with the phosphate of ATP, thus stabilizing the nucleotide protein complex. (ACTIN: General Principles from Studies in Yeast). Pure actin can be switched between these states in the test-tube by altering the salt concentration. Actin in low salt conditions is in the G-state, while adding salts causes the actin to polymerise.   (http://www.bms.ed.ac.uk/research/others/smaciver/lectures/Cs1.htm Because actin polymerization is reversible, filaments can depolymerize by the dissociation of actin subunits, allowing actin filaments to be broken down when necessary. Therefore an apparent equilibrium exists between actin monomers and filaments, which is dependent on the concentration of free monomers. At this critical concentration, monomers and filaments are in apparent equilibrium.(Structure and Organization of Actin Filament)&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
=Function=&lt;br /&gt;
&lt;br /&gt;
Studies of actin have shown that it has many functions within living cells. This range of functions is due to the diverse morphology of its structures and its interactions with actin-binding proteins (ABPs). (Conformational Dynamics of Actin: Effectors and Implications for Biological Function) The diversity in the functional ability of actin proteins is due in part to its interaction with actin-binding proteins. F-actin and G-actin interact with a wide array of proteins. There are over 150 known actin binding proteins (ABPs), which makes up 25% of cellular protein.  (http://www.cytoskeleton.com/actin?gclid=CNyRpoPC3a8CFeUEQAodTFkoCg) Actin has proved to be an important component in the cytoskeleton. The actin cytoskeleton is known as the microfilament and has a multi-purpose role in important cell processes such as maintaining cellular polarity, cell shape, cell motility, adhesion, cytokinesis and endocytosis. (Conformational Dynamics of Actin: Effectors and Implications for Biological Function)  Myosin molecules are a class of actin motors that aid in creating movement by “walking” across actin filaments and contracting muscle tissues. Microfilaments, also known as thin filaments are helical polymers composed of globular actin (G-actin). The polymers are polar and bind to nucleotides such as ATP in order to hydrolyze them. (Walter F., PhD. Boron (2003) Medical Physiology: A Cellular And Molecular Approaoch Elsevier/Saunders, pp. 1,300 ISBN:1-4160-2328-3. Page 28) Actin has no important enzymatic activity, however, it inhibits DNase I and activates the myosin ATPase. Actin filaments activate the Mg2+ ATPase activity and the movement of myosin along actin filaments produces the force for muscle contraction and other cell movements. Motility mechanisms which involve actin are controlled by the interaction in the G or F form with the various ABPs. (Structure and Function of Actin by Wolfgang Kabsch) &lt;br /&gt;
The mechanism is controlled by Ca2+ stimulated myosin light chain kinase. MLCK regulates the coming together of myosin and actin filaments and controls the force with which they contract. Actin-myosin filament networks are found in cells such as neurons and epithelial cells that don’t require movement. These networks provide neurons the ability to stretch cell processes long distances. (Walter F., PhD. Boron (2003) Medical Physiology: A Cellular And Molecular Approaoch Elsevier/Saunders, pp. 1,300 ISBN:1-4160-2328-3. Page 28) In higher order eukaryotic cells, actin filaments and myosin II filaments often come together to perform a function and then disassemble. For example in cytokineses, actin and myosin II filaments organize to form a contractile ring. The ring exists beneath the plasma membrane and during the M-phase of cell division, the ring contracts, pulling the plasma membrane inward and constricts the middle of the cell, leading to an eventual separation into two daughter cells. (http://www.ncbi.nlm.nih.gov/books/NBK28299/)  &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
=Medical Implications=&lt;br /&gt;
&lt;br /&gt;
Many of the functions of the cytoskeleton involve cytoskeleton and plasma membrane interactions. Proteins that exist between the two help to control cell shape, define the membrane domains and regulate cell/cell interactions and adhesion. There are at least 15 major protein species involved in the membrane-cytoskeleton of the human red blood cell. A mutation in any of these proteins can lead to cell fragility and cell death. Homologs of the erythrocyte membrane-skeleton can be found in many other cell types, which suggests the significance of these proteins. One of particular importance is the actin associated protein dystrophin. Dystrophin is an important part of the sarcolemmal membrane where it links the membrane to the sides of the actin filament bundles. Mutations in this protein leads to muscular dystrophies such as Duchenne’s disease or Becker muscular dystrophy. A homolog of dystrophin called utropin is thought to play a similar role in non-muscle cells.(http://www.cytoskeleton.com/actin?gclid=CNyRpoPC3a8CFeUEQAodTFkoCg)&lt;br /&gt;
  The genome of many mammals, including humans contains six actin genes, ACTA1, ACTA2, ACTB, ACTC, ACTG1 and ACTG2. Four of these are differentially expressed in cardiac (ACTC), smooth (ACTA2) enteric (ACTG2) and skeletal muscles (ACTA1); two are described as cytoplasmic actin genes (ACTB and ACTG1) and are expressed in all cells.  (Actin-Binding Proteins and Disease ) Actin mutations were not really known until the last 6-10 years. Mutations that have been found to cause human diseases have been found in the ACTC cardiac muscle gene which can cause dilated or hypertrophic cardiomyopathies including congenital fiber-type disproportion (CFTDP). Recently, mutations in ACTG1 have been associated with autosomal dominant deafness. Majority of actin disease mutations have been found to be dominant mutations. This has been the case for actin mutations is the Drosophila flight muscle-specific actin gene ACT88F. Scientists believe the common dominance of actin mutations is because the major functions of actin occur when it is in its F-form, associated with other proteins. The dominant actin mutations that lead to disease are mostly missense mutations. Actin mutations have been found in a variety of species such as yeast, nematodes and flies whose genomes are more accessible to mutagenesis. It is thought that there are three reasons why actin mutations are likely to be at very low frequencies in human populations: 1. actin is a ubiquitously expressed protein, 2. it is a highly conserved protein with many binding partners, so mutations in a large fraction of actin residues appear to cause a severe phenotype in humans and other organisms and 3. most actin mutations are dominant and given the usually severe effects, are not passed on to offspring. Thus familial actin mutants are likely to be relatively mild dominant alleles or recessive. Severe dominant alleles are likely to be de novo mutations. In the case of cytoplasmic actin, five ACT1G disease-causing mutant alleles are known so far and no disease-causing ACTB alleles have yet been described.&lt;br /&gt;
&lt;br /&gt;
=References=&lt;br /&gt;
&lt;br /&gt;
{{reflist}}&lt;br /&gt;
&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 18573073&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 8489492&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;Alberts, B., Johnson, A., Lewis, J., Raff, M., Roberts, K., &amp;amp; Walter, P. (2002). Molecular biology of the cell. (3 ed.). New York: Garland Science.&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 1388079&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 20672362&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 2673365&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 2395459&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 2395461&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 8970724 &amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 2395459&amp;lt;/ref&amp;gt; &lt;br /&gt;
&amp;lt;ref&amp;gt;Boron, W., &amp;amp; Boulpaep, E. (2008). Medical physiology. (2 ed., pp. 14-20). Saunders Elsevier. Retrieved from http://books.google.com/books/about/Medical_Physiology_E_Book.html?id=HlMJRw08ihgC&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;Remedios, C., &amp;amp; Chhabra, D. (2008). Actin-binding proteins and diseases. (8 ed., pp. 16-18). New York: Springer.&amp;lt;/ref&amp;gt;&lt;/div&gt;</summary>
		<author><name>Brittany Smith</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_471&amp;diff=1384391</id>
		<title>Sandbox Reserved 471</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_471&amp;diff=1384391"/>
		<updated>2012-05-02T14:51:44Z</updated>

		<summary type="html">&lt;p&gt;Brittany Smith: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;Structure load=&#039;3hbt&#039; size=&#039;500&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;Actin&#039; scene=&#039;Insert optional scene name here&#039; /&amp;gt; &amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
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&amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Introduction ==&lt;br /&gt;
Actin is a spherical 43 kilo-Dalton protein that is found in many cell types. It belongs to the class of proteins known as [http://en.wikipedia.org/wiki/Motor_proteins motor proteins]. Motor proteins function in the movement of substances across a substrate by utilizing [http://en.wikipedia.org/wiki/Adenosine_triphosphate ATP] as an energy source. It is one of the most highly conserved proteins differing by no more than 20% in species ranging from yeast to humans. (&amp;quot;Mediation, Modulation and Consequences of Membrane-Cytoskeleton Interactions&amp;quot;.) In an alignment of the 81 unique actin protein sequences, scientists found that 17.4% of positions in the consensus sequence are invariant in all actins, 35.6 % of positions are invariant or have a difference in only one of the 81 actins, and 40.4% of positions are invariant or have what are considered conservative changes (Review Article Molecular genetics of actin function)   &lt;br /&gt;
Actin is the monomeric subunit of microfilaments, one of the three key components of the [http://en.wikipedia.org/wiki/Cytoskeleton cytoskeleton] and thin filaments, which is part of the contractile unit in muscle cells. The cytoskeleton is a three-dimensional complex of filamentous protein that creates the shape and structure of cells, as well as fills in the gaps between organelles. This is what provides the cells with motility. There are three main proteins that make up the cytoskeleton. They are microfilaments, intermediate filaments and microtubules.  (http://www.bms.ed.ac.uk/research/others/smaciver/lectures/Cs1.htm&lt;br /&gt;
An Introduction to the Cytoskeleton. CS1) Actin exists in two forms, the monomeric, globular form (G-actin) and the polymeric, filamentous form (F-actin). (Conformational Dynamics of Actin: Effectors and Implications for Biological Function)In vertebrates there are three main groups of actin isoforms which include alpha, beta, and gamma. These isotypes (α, β and γ), show &amp;gt;90% amino-acid homology between isotypes and &amp;gt;98% homology within members of a particular isotypic group. (http://www.cytoskeleton.com/actin?gclid=CNyRpoPC3a8CFeUEQAodTFkoCg)  The alpha actins, found in muscle tissues, are a major constituent of the contractile apparatus. The beta and gamma actins coexist in most cell types as components of the cytoskeleton, and as mediators of internal cell motility.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
=History=&lt;br /&gt;
&lt;br /&gt;
In 1942, [http://en.wikipedia.org/wiki/Brun%C3%B3_Ferenc_Straub Bruno Ferenc Straub] isolated actin as a water soluble component of muscle acetone powder. He found that at increased ionic strength the G-actin molecules would come together to form the F-actin filament. Actin was later found in non-muscle cells and its structure was seen through the use of [http://en.wikipedia.org/wiki/Immunofluorescence_microscopy immunofluorescence microscopy]. The next major accomplishment came with the discovery of the amino acid sequence. This allowed researchers to locate chemical and enzymatic alterations and to study how they affected the properties of the molecule. The high conservation of actin’s structure throughout various species was discovered through [http://en.wikipedia.org/wiki/Immunofluorescence_microscopy comparative sequence analysis]. In 1950, Straub reported that actin contained bound ATP and that during the polymerization of the monomers into microfilaments, the ATP was hydrolyzed to ADP and inorganic phosphate. (Straub FB, Feuer G (1989). &amp;quot;Adenosinetriphosphate. The functional group of actin. 1950&amp;quot;. Biochim. Biophys. Acta 1000: 180–95.PMID 2673365.) His discovery led to his suggestion that ATP-bound actin transforming into ADP-bound actin was what created muscle contractions. In the early 1980’s the principles of actin polymerization were exposed and the first actin-binding proteins (ABPs) were characterized according to their in vivo and in vitro functions. In 1990, the crystal structure of G-actin was solved by Kabsch. (Kabsch W, Mannherz HG, Suck D, Pai EF, Holmes KC (September 1990). &amp;quot;Atomic structure of the actin:DNase I complex&amp;quot;. Nature 347 (6288): 37–44. doi:10.1038/347037a0. PMID 2395459.) In this same year a model of F-actin was suggested by Holmes et al. The model was created by fitting a helix of G-actin structures according to low-resolution fiber diffraction data from the F-actin. ( Holmes KC, Popp D, Gebhard W, Kabsch W (September 1990). &amp;quot;Atomic model of the actin filament&amp;quot;. Nature 347 (6288): 44–9.doi:10.1038/347044a0. PMID 2395461.) Further advances in cryoelectron microscopy allowed scientists to find the binding sites for myosin and tropomyosin. A combination of [http://en.wikipedia.org/wiki/X-ray_crystallography X-ray crystallography] with fiber diffraction led to an atomic model of F-actin. (Structure and Function of Actin by Wolfgang Kabsch) After some debate actin also became generally accepted as an important structural and functional component of the cell nucleus (Conformational Dynamics of Actin: Effectors and Implications for Biological Function) Since this pioneering work by Straub, interest in actin has increased tremendously and so has the realization of how complex its structure is.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
=Structure=&lt;br /&gt;
&lt;br /&gt;
[[Image:Actin Image.gif]]&lt;br /&gt;
&lt;br /&gt;
Actin exists in both its monomeric (globular, G-actin) and polymeric (filamentous or F-actin) form. The actin monomer is approximately pear shaped. Actin is composed of 376 residues that are folded into two large domains, each comprised of two subdomains. Its secondary structure is 41% helical (22 helices; 153 residues) and 20% beta sheet (20 strands; 77 residues). (PDB) The actin filament is a double-stranded, right-handed helix with a half-pitch of 37 nm and a one-start left-handed genetic helix with a rise of 2.75 nm per monomer. The width of the filament is within the range of 7–10 nm. (Conformational Dynamics of Actin: Effectors and Implications for Biological Function) The large domains are organized to form a hinged molecule with a deep cleft. Subdomains 1 and 3 are structurally related, whereas subdomains 2 and 4 can be viewed as large insertions into subdomains 1 and 3, respectively. There is moderately little contact between the two major domains of actin; the polypeptide chain passes twice between these domains at the loop centered at residue Lys336 and at the linker helix Gln137-Ser145, which functions as the hinge axis between the domains. As a result, two clefts are formed between the domains. Within the upper cleft are the cofactors, an adenine nucleotide and a divalent metal ion, usually magnesium. It is thought that the cofactors interact with the domains on either side, increasing their connectivity. The lower cleft between domains 1 and 3 is lined by residues Tyr143, Ala144, Gly146, Thr148, Gly168, Ile341, Ile345, Leu346, Leu349, Thr351, and Met355, which are predominantly hydrophobic. This cleft constitutes the major binding site for most ABPs, and is thus called the targetbinding or hydrophobic cleft. (Actin Structure and Function). Most of the interaction that occur in the subunit are electrostatic in character but there are also hydrophobic interactions.  (Actin Structure and Function)&lt;br /&gt;
Under physiologic conditions, G-actin is transformed to F-actin by ATP. After G-actin is bound to an ATP molecule it can then bind to another ATP bound monomer to form an unstable dimer. It can then add a third ATP bound monomer to create a stable trimer that serves as a basis for building fibrous actin (F-actin). Once the F-actin is formed the ATP can be hydrolyzed, keeping the bound ADP and releasing an inorganic phosphate. The polymer can undergo a process known as treadmilling. This is where the polymer continuously grows at its positive end but disassembles at its negative end. This process requires a permanent source of energy such as ATP (Walter F., PhD. Boron (2003) Medical Physiology: A Cellular And Molecular Approaoch Elsevier/Saunders, pp. 1,300 ISBN:1-4160-2328-3. Page 28) &lt;br /&gt;
Unlike G-actin, F-actin does not form crystalline arrays that can be analyzed by X-ray crystallography. Instead it can be found by using fiber diffraction, electron-microscopy data and mathematical models. The structure can then be refined and remodeled as necessary. (ACTIN: General Principles from Studies in Yeast) The first high-resolution structural model of the actin filament was at a resolution of 8 A ˚ and was proposed by Holmes et al., 1990. Recently, an improved high-resolution F-actin model was created by Oda et al., 2009 with a resolution of 3.3 A ˚ in the radial and 5.6 A ˚ in the equatorial directions. &lt;br /&gt;
Vertebrates express three main actin isoforms, including three α-isoforms of skeletal, cardiac, and smooth muscles and the β- and γ- isoforms expressed in nonmuscle and muscle cells. Actin isoforms are different in a few of its amino acids, with most variations occurring toward the N terminus. Actin also undergoes various forms of posttranslational modifications. For instance, His73 of skeletal muscle α-actin is methylated, the N-terminal methionine and cysteine residues are acetylated and cleaved, and the resulting N-terminal aspartic acid is then re-acetylated. Since the original determination of the crystal structure of G-actin, over 80 structures of actin have been reported.  The majority of these structures have been obtained as complexes with actin-binding proteins (ABPs). (Actin Structure and Function)&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
=Mechanism of Action=&lt;br /&gt;
&lt;br /&gt;
Polymerization mechanism&lt;br /&gt;
At increased ionic strength, G-actin molecules polymerize into filaments, known as F-actin. F-actin is the main component of the thin filaments in sarcomeres of muscle cells. Muscle sarcomeres use ATP hydrolysis to produce conrtractions by sliding the thin actin filament&lt;br /&gt;
past thick myosin filaments. The entire process is initiated by the slow formation of actin dimmers and trimers. These serve as a base for filament elongation. During elongation more actin monomers associate to than dissociate from either of the two ends, which results in the net growth of both filament ends. The steady-state phase is characterised by a dynamic equilibrium where the length of the actin filaments remains constant. This means while monomers are associating, other monomers are dissociating from the ends. In this dynamic equilibrium a stationery population of free actin monomers is established and is called the critical concentration. The polarity of the ends of the actin filaments play a key role in elongation. The ends of the filament are referred to as &amp;quot;barbed&amp;quot; and &amp;quot;pointed&amp;quot; according to the polarity of the arrowhead-like structure generated on binding with myosin subfragment 1. ) (Structure and Function of Actin by Wolfgang Kabsch) The barbed or plus end binds actin monomers faster than the pointed or minus end. Although its ATPase activity is not crucial for actin polymerisation, actin self-assembly is associated with the ATPase cycle, which powers this treadmilling process (Conformational Dynamics of Actin: Effectors and Implications for Biological Function) After the actin molecule is changed into a filament, the bound ATP is hydrolysed to ADP and inorganic phosphate is realeased. (Structure and Function of Actin by Wolfgang Kabsch) The formation of the F-actin is what stimulates the actin ATPase. The release of the  inorganic phosphate happens more slowly than the formation of the filament so that the growing filament has a cap of ATPactin at its barbed end, while monomers containing ADP and inorganic phosphate accumulate in the rest of the filament.&lt;br /&gt;
&lt;br /&gt;
[[Image:Filament_formation.png]] [[Image:Treadmilling.gif]] &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
The mature filament contains only ADP-actin. The tendency of actin to polymerize depends upon the affinity of actin monomers for filament ends. There is an actin monomer concentration below which actin will not polymerize known as the Critical Concentration (CC). At monomer concentrations above the CC, the actin will polymerize until the free monomer concentration is equal to the CC. (http://www.ncbi.nlm.nih.gov/books/NBK28299/) It is thought that the strong binding to the ATP is due to the amide proton of a serine 14 amino acid forming hydrogen bonds with the phosphate of ATP, thus stabilizing the nucleotide protein complex. (ACTIN: General Principles from Studies in Yeast). Pure actin can be switched between these states in the test-tube by altering the salt concentration. Actin in low salt conditions is in the G-state, while adding salts causes the actin to polymerise.   (http://www.bms.ed.ac.uk/research/others/smaciver/lectures/Cs1.htm Because actin polymerization is reversible, filaments can depolymerize by the dissociation of actin subunits, allowing actin filaments to be broken down when necessary. Therefore an apparent equilibrium exists between actin monomers and filaments, which is dependent on the concentration of free monomers. At this critical concentration, monomers and filaments are in apparent equilibrium.(Structure and Organization of Actin Filament)&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
=Function=&lt;br /&gt;
&lt;br /&gt;
Studies of actin have shown that it has many functions within living cells. This range of functions is due to the diverse morphology of its structures and its interactions with actin-binding proteins (ABPs). (Conformational Dynamics of Actin: Effectors and Implications for Biological Function) The diversity in the functional ability of actin proteins is due in part to its interaction with actin-binding proteins. F-actin and G-actin interact with a wide array of proteins. There are over 150 known actin binding proteins (ABPs), which makes up 25% of cellular protein.  (http://www.cytoskeleton.com/actin?gclid=CNyRpoPC3a8CFeUEQAodTFkoCg) Actin has proved to be an important component in the cytoskeleton. The actin cytoskeleton is known as the microfilament and has a multi-purpose role in important cell processes such as maintaining cellular polarity, cell shape, cell motility, adhesion, cytokinesis and endocytosis. (Conformational Dynamics of Actin: Effectors and Implications for Biological Function)  Myosin molecules are a class of actin motors that aid in creating movement by “walking” across actin filaments and contracting muscle tissues. Microfilaments, also known as thin filaments are helical polymers composed of globular actin (G-actin). The polymers are polar and bind to nucleotides such as ATP in order to hydrolyze them. (Walter F., PhD. Boron (2003) Medical Physiology: A Cellular And Molecular Approaoch Elsevier/Saunders, pp. 1,300 ISBN:1-4160-2328-3. Page 28) Actin has no important enzymatic activity, however, it inhibits DNase I and activates the myosin ATPase. Actin filaments activate the Mg2+ ATPase activity and the movement of myosin along actin filaments produces the force for muscle contraction and other cell movements. Motility mechanisms which involve actin are controlled by the interaction in the G or F form with the various ABPs. (Structure and Function of Actin by Wolfgang Kabsch) &lt;br /&gt;
The mechanism is controlled by Ca2+ stimulated myosin light chain kinase. MLCK regulates the coming together of myosin and actin filaments and controls the force with which they contract. Actin-myosin filament networks are found in cells such as neurons and epithelial cells that don’t require movement. These networks provide neurons the ability to stretch cell processes long distances. (Walter F., PhD. Boron (2003) Medical Physiology: A Cellular And Molecular Approaoch Elsevier/Saunders, pp. 1,300 ISBN:1-4160-2328-3. Page 28) In higher order eukaryotic cells, actin filaments and myosin II filaments often come together to perform a function and then disassemble. For example in cytokineses, actin and myosin II filaments organize to form a contractile ring. The ring exists beneath the plasma membrane and during the M-phase of cell division, the ring contracts, pulling the plasma membrane inward and constricts the middle of the cell, leading to an eventual separation into two daughter cells. http://www.ncbi.nlm.nih.gov/books/NBK28299/)  &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
=Medical Implications=&lt;br /&gt;
&lt;br /&gt;
Many of the functions of the cytoskeleton involve cytoskeleton and plasma membrane interactions. Proteins that exist between the two help to control cell shape, define the membrane domains and regulate cell/cell interactions and adhesion. There are at least 15 major protein species involved in the membrane-cytoskeleton of the human red blood cell. A mutation in any of these proteins can lead to cell fragility and cell death. Homologs of the erythrocyte membrane-skeleton can be found in many other cell types, which suggests the significance of these proteins. One of particular importance is the actin associated protein dystrophin. Dystrophin is an important part of the sarcolemmal membrane where it links the membrane to the sides of the actin filament bundles. Mutations in this protein leads to muscular dystrophies such as Duchenne’s disease or Becker muscular dystrophy. A homolog of dystrophin called utropin is thought to play a similar role in non-muscle cells.(http://www.cytoskeleton.com/actin?gclid=CNyRpoPC3a8CFeUEQAodTFkoCg)&lt;br /&gt;
  The genome of many mammals, including humans contains six actin genes, ACTA1, ACTA2, ACTB, ACTC, ACTG1 and ACTG2. Four of these are differentially expressed in cardiac (ACTC), smooth (ACTA2) enteric (ACTG2) and skeletal muscles (ACTA1); two are described as cytoplasmic actin genes (ACTB and ACTG1) and are expressed in all cells.  (Actin-Binding Proteins and Disease ) Actin mutations were not really known until the last 6-10 years. Mutations that have been found to cause human diseases have been found in the ACTC cardiac muscle gene which can cause dilated or hypertrophic cardiomyopathies including congenital fiber-type disproportion (CFTDP). Recently, mutations in ACTG1 have been associated with autosomal dominant deafness. Majority of actin disease mutations have been found to be dominant mutations. This has been the case for actin mutations is the Drosophila flight muscle-specific actin gene ACT88F. Scientists believe the common dominance of actin mutations is because the major functions of actin occur when it is in its F-form, associated with other proteins. The dominant actin mutations that lead to disease are mostly missense mutations. Actin mutations have been found in a variety of species such as yeast, nematodes and flies whose genomes are more accessible to mutagenesis. It is thought that there are three reasons why actin mutations are likely to be at very low frequencies in human populations: 1. actin is a ubiquitously expressed protein, 2. it is a highly conserved protein with many binding partners, so mutations in a large fraction of actin residues appear to cause a severe phenotype in humans and other organisms and 3. most actin mutations are dominant and given the usually severe effects, are not passed on to offspring. Thus familial actin mutants are likely to be relatively mild dominant alleles or recessive. Severe dominant alleles are likely to be de novo mutations. In the case of cytoplasmic actin, five ACT1G disease-causing mutant alleles are known so far and no disease-causing ACTB alleles have yet been described.&lt;br /&gt;
&lt;br /&gt;
=References=&lt;br /&gt;
&lt;br /&gt;
{{reflist}}&lt;br /&gt;
&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 18573073&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 8489492&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;Alberts, B., Johnson, A., Lewis, J., Raff, M., Roberts, K., &amp;amp; Walter, P. (2002). Molecular biology of the cell. (3 ed.). New York: Garland Science.&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 1388079&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 20672362&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 2673365&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 2395459&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 2395461&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 8970724 &amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 2395459&amp;lt;/ref&amp;gt; &lt;br /&gt;
&amp;lt;ref&amp;gt;Boron, W., &amp;amp; Boulpaep, E. (2008). Medical physiology. (2 ed., pp. 14-20). Saunders Elsevier. Retrieved from http://books.google.com/books/about/Medical_Physiology_E_Book.html?id=HlMJRw08ihgC&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;Remedios, C., &amp;amp; Chhabra, D. (2008). Actin-binding proteins and diseases. (8 ed., pp. 16-18). New York: Springer.&amp;lt;/ref&amp;gt;&lt;/div&gt;</summary>
		<author><name>Brittany Smith</name></author>
	</entry>
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		<updated>2012-05-02T14:49:00Z</updated>

		<summary type="html">&lt;p&gt;Brittany Smith: &lt;/p&gt;
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&lt;div&gt;&amp;lt;Structure load=&#039;3hbt&#039; size=&#039;500&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;Actin&#039; scene=&#039;Insert optional scene name here&#039; /&amp;gt; &amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
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== Introduction ==&lt;br /&gt;
Actin is a spherical 43 kilo-Dalton protein that is found in many cell types. It belongs to the class of proteins known as [http://en.wikipedia.org/wiki/Motor_proteins motor proteins]. Motor proteins function in the movement of substances across a substrate by utilizing [http://en.wikipedia.org/wiki/Adenosine_triphosphate ATP] as an energy source. It is one of the most highly conserved proteins differing by no more than 20% in species ranging from yeast to humans. (&amp;quot;Mediation, Modulation and Consequences of Membrane-Cytoskeleton Interactions&amp;quot;.) In an alignment of the 81 unique actin protein sequences, scientists found that 17.4% of positions in the consensus sequence are invariant in all actins, 35.6 % of positions are invariant or have a difference in only one of the 81 actins, and 40.4% of positions are invariant or have what are considered conservative changes (Review Article Molecular genetics of actin function)   &lt;br /&gt;
Actin is the monomeric subunit of microfilaments, one of the three key components of the [http://en.wikipedia.org/wiki/Cytoskeleton cytoskeleton] and thin filaments, which is part of the contractile unit in muscle cells. The cytoskeleton is a three-dimensional complex of filamentous protein that creates the shape and structure of cells, as well as fills in the gaps between organelles. This is what provides the cells with motility. There are three main proteins that make up the cytoskeleton. They are microfilaments, intermediate filaments and microtubules.  (http://www.bms.ed.ac.uk/research/others/smaciver/lectures/Cs1.htm&lt;br /&gt;
An Introduction to the Cytoskeleton. CS1) Actin exists in two forms, the monomeric, globular form (G-actin) and the polymeric, filamentous form (F-actin). (Conformational Dynamics of Actin: Effectors and Implications for Biological Function)In vertebrates there are three main groups of actin isoforms which include alpha, beta, and gamma. These isotypes (α, β and γ), show &amp;gt;90% amino-acid homology between isotypes and &amp;gt;98% homology within members of a particular isotypic group. (http://www.cytoskeleton.com/actin?gclid=CNyRpoPC3a8CFeUEQAodTFkoCg)  The alpha actins, found in muscle tissues, are a major constituent of the contractile apparatus. The beta and gamma actins coexist in most cell types as components of the cytoskeleton, and as mediators of internal cell motility.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== History ==&lt;br /&gt;
&lt;br /&gt;
In 1942, [http://en.wikipedia.org/wiki/Brun%C3%B3_Ferenc_Straub Bruno Ferenc Straub] isolated actin as a water soluble component of muscle acetone powder. He found that at increased ionic strength the G-actin molecules would come together to form the F-actin filament. Actin was later found in non-muscle cells and its structure was seen through the use of [http://en.wikipedia.org/wiki/Immunofluorescence_microscopy immunofluorescence microscopy]. The next major accomplishment came with the discovery of the amino acid sequence. This allowed researchers to locate chemical and enzymatic alterations and to study how they affected the properties of the molecule. The high conservation of actin’s structure throughout various species was discovered through [http://en.wikipedia.org/wiki/Immunofluorescence_microscopy comparative sequence analysis]. In 1950, Straub reported that actin contained bound ATP and that during the polymerization of the monomers into microfilaments, the ATP was hydrolyzed to ADP and inorganic phosphate. (Straub FB, Feuer G (1989). &amp;quot;Adenosinetriphosphate. The functional group of actin. 1950&amp;quot;. Biochim. Biophys. Acta 1000: 180–95.PMID 2673365.) His discovery led to his suggestion that ATP-bound actin transforming into ADP-bound actin was what created muscle contractions. In the early 1980’s the principles of actin polymerization were exposed and the first actin-binding proteins (ABPs) were characterized according to their in vivo and in vitro functions. In 1990, the crystal structure of G-actin was solved by Kabsch. (Kabsch W, Mannherz HG, Suck D, Pai EF, Holmes KC (September 1990). &amp;quot;Atomic structure of the actin:DNase I complex&amp;quot;. Nature 347 (6288): 37–44. doi:10.1038/347037a0. PMID 2395459.) In this same year a model of F-actin was suggested by Holmes et al. The model was created by fitting a helix of G-actin structures according to low-resolution fiber diffraction data from the F-actin. ( Holmes KC, Popp D, Gebhard W, Kabsch W (September 1990). &amp;quot;Atomic model of the actin filament&amp;quot;. Nature 347 (6288): 44–9.doi:10.1038/347044a0. PMID 2395461.) Further advances in cryoelectron microscopy allowed scientists to find the binding sites for myosin and tropomyosin. A combination of [http://en.wikipedia.org/wiki/X-ray_crystallography X-ray crystallography] with fiber diffraction led to an atomic model of F-actin. (Structure and Function of Actin by Wolfgang Kabsch) After some debate actin also became generally accepted as an important structural and functional component of the cell nucleus (Conformational Dynamics of Actin: Effectors and Implications for Biological Function) Since this pioneering work by Straub, interest in actin has increased tremendously and so has the realization of how complex its structure is.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
==Structure==&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Actin exists in both its monomeric (globular, G-actin) and polymeric (filamentous or F-actin) form. The actin monomer is approximately pear shaped. Actin is composed of 376 residues that are folded into two large domains, each comprised of two subdomains. Its secondary structure is 41% helical (22 helices; 153 residues) and 20% beta sheet (20 strands; 77 residues). (PDB) The actin filament is a double-stranded, right-handed helix with a half-pitch of 37 nm and a one-start left-handed genetic helix with a rise of 2.75 nm per monomer. The width of the filament is within the range of 7–10 nm. (Conformational Dynamics of Actin: Effectors and Implications for Biological Function) The large domains are organized to form a hinged molecule with a deep cleft. Subdomains 1 and 3 are structurally related, whereas subdomains 2 and 4 can be viewed as large insertions into subdomains 1 and 3, respectively. There is moderately little contact between the two major domains of actin; the polypeptide chain passes twice between these domains at the loop centered at residue Lys336 and at the linker helix Gln137-Ser145, which functions as the hinge axis between the domains. As a result, two clefts are formed between the domains. Within the upper cleft are the cofactors, an adenine nucleotide and a divalent metal ion, usually magnesium. It is thought that the cofactors interact with the domains on either side, increasing their connectivity. The lower cleft between domains 1 and 3 is lined by residues Tyr143, Ala144, Gly146, Thr148, Gly168, Ile341, Ile345, Leu346, Leu349, Thr351, and Met355, which are predominantly hydrophobic. This cleft constitutes the major binding site for most ABPs, and is thus called the targetbinding or hydrophobic cleft. (Actin Structure and Function). Most of the interaction that occur in the subunit are electrostatic in character but there are also hydrophobic interactions.  (Actin Structure and Function)&lt;br /&gt;
Under physiologic conditions, G-actin is transformed to F-actin by ATP. After G-actin is bound to an ATP molecule it can then bind to another ATP bound monomer to form an unstable dimer. It can then add a third ATP bound monomer to create a stable trimer that serves as a basis for building fibrous actin (F-actin). Once the F-actin is formed the ATP can be hydrolyzed, keeping the bound ADP and releasing an inorganic phosphate. The polymer can undergo a process known as treadmilling. This is where the polymer continuously grows at its positive end but disassembles at its negative end. This process requires a permanent source of energy such as ATP (Walter F., PhD. Boron (2003) Medical Physiology: A Cellular And Molecular Approaoch Elsevier/Saunders, pp. 1,300 ISBN:1-4160-2328-3. Page 28) &lt;br /&gt;
Unlike G-actin, F-actin does not form crystalline arrays that can be analyzed by X-ray crystallography. Instead it can be found by using fiber diffraction, electron-microscopy data and mathematical models. The structure can then be refined and remodeled as necessary. (ACTIN: General Principles from Studies in Yeast) The first high-resolution structural model of the actin filament was at a resolution of 8 A ˚ and was proposed by Holmes et al., 1990. Recently, an improved high-resolution F-actin model was created by Oda et al., 2009 with a resolution of 3.3 A ˚ in the radial and 5.6 A ˚ in the equatorial directions. &lt;br /&gt;
Vertebrates express three main actin isoforms, including three α-isoforms of skeletal, cardiac, and smooth muscles and the β- and γ- isoforms expressed in nonmuscle and muscle cells. Actin isoforms are different in a few of its amino acids, with most variations occurring toward the N terminus. Actin also undergoes various forms of posttranslational modifications. For instance, His73 of skeletal muscle α-actin is methylated, the N-terminal methionine and cysteine residues are acetylated and cleaved, and the resulting N-terminal aspartic acid is then re-acetylated. Since the original determination of the crystal structure of G-actin, over 80 structures of actin have been reported.  The majority of these structures have been obtained as complexes with actin-binding proteins (ABPs). (Actin Structure and Function)&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
==Mechanism of Action==&lt;br /&gt;
&lt;br /&gt;
Polymerization mechanism&lt;br /&gt;
At increased ionic strength, G-actin molecules polymerize into filaments, known as F-actin. F-actin is the main component of the thin filaments in sarcomeres of muscle cells. Muscle sarcomeres use ATP hydrolysis to produce conrtractions by sliding the thin actin filament&lt;br /&gt;
past thick myosin filaments. The entire process is initiated by the slow formation of actin dimmers and trimers. These serve as a base for filament elongation. During elongation more actin monomers associate to than dissociate from either of the two ends, which results in the net growth of both filament ends. The steady-state phase is characterised by a dynamic equilibrium where the length of the actin filaments remains constant. This means while monomers are associating, other monomers are dissociating from the ends. In this dynamic equilibrium a stationery population of free actin monomers is established and is called the critical concentration. The polarity of the ends of the actin filaments play a key role in elongation. The ends of the filament are referred to as &amp;quot;barbed&amp;quot; and &amp;quot;pointed&amp;quot; according to the polarity of the arrowhead-like structure generated on binding with myosin subfragment 1. ) (Structure and Function of Actin by Wolfgang Kabsch) The barbed or plus end binds actin monomers faster than the pointed or minus end. Although its ATPase activity is not crucial for actin polymerisation, actin self-assembly is associated with the ATPase cycle, which powers this treadmilling process (Conformational Dynamics of Actin: Effectors and Implications for Biological Function) After the actin molecule is changed into a filament, the bound ATP is hydrolysed to ADP and inorganic phosphate is realeased. (Structure and Function of Actin by Wolfgang Kabsch) The formation of the F-actin is what stimulates the actin ATPase. The release of the  inorganic phosphate happens more slowly than the formation of the filament so that the growing filament has a cap of ATPactin at its barbed end, while monomers containing ADP and inorganic phosphate accumulate in the rest of the filament. &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
The mature filament contains only ADP-actin. The tendency of actin to polymerize depends upon the affinity of actin monomers for filament ends. There is an actin monomer concentration below which actin will not polymerize known as the Critical Concentration (CC). At monomer concentrations above the CC, the actin will polymerize until the free monomer concentration is equal to the CC. (http://www.ncbi.nlm.nih.gov/books/NBK28299/) It is thought that the strong binding to the ATP is due to the amide proton of a serine 14 amino acid forming hydrogen bonds with the phosphate of ATP, thus stabilizing the nucleotide protein complex. (ACTIN: General Principles from Studies in Yeast). Pure actin can be switched between these states in the test-tube by altering the salt concentration. Actin in low salt conditions is in the G-state, while adding salts causes the actin to polymerise.   (http://www.bms.ed.ac.uk/research/others/smaciver/lectures/Cs1.htm Because actin polymerization is reversible, filaments can depolymerize by the dissociation of actin subunits, allowing actin filaments to be broken down when necessary. Therefore an apparent equilibrium exists between actin monomers and filaments, which is dependent on the concentration of free monomers. At this critical concentration, monomers and filaments are in apparent equilibrium.(Structure and Organization of Actin Filament)&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
==Function==&lt;br /&gt;
&lt;br /&gt;
Studies of actin have shown that it has many functions within living cells. This range of functions is due to the diverse morphology of its structures and its interactions with actin-binding proteins (ABPs). (Conformational Dynamics of Actin: Effectors and Implications for Biological Function) The diversity in the functional ability of actin proteins is due in part to its interaction with actin-binding proteins. F-actin and G-actin interact with a wide array of proteins. There are over 150 known actin binding proteins (ABPs), which makes up 25% of cellular protein.  (http://www.cytoskeleton.com/actin?gclid=CNyRpoPC3a8CFeUEQAodTFkoCg) Actin has proved to be an important component in the cytoskeleton. The actin cytoskeleton is known as the microfilament and has a multi-purpose role in important cell processes such as maintaining cellular polarity, cell shape, cell motility, adhesion, cytokinesis and endocytosis. (Conformational Dynamics of Actin: Effectors and Implications for Biological Function)  Myosin molecules are a class of actin motors that aid in creating movement by “walking” across actin filaments and contracting muscle tissues. Microfilaments, also known as thin filaments are helical polymers composed of globular actin (G-actin). The polymers are polar and bind to nucleotides such as ATP in order to hydrolyze them. (Walter F., PhD. Boron (2003) Medical Physiology: A Cellular And Molecular Approaoch Elsevier/Saunders, pp. 1,300 ISBN:1-4160-2328-3. Page 28) Actin has no important enzymatic activity, however, it inhibits DNase I and activates the myosin ATPase. Actin filaments activate the Mg2+ ATPase activity and the movement of myosin along actin filaments produces the force for muscle contraction and other cell movements. Motility mechanisms which involve actin are controlled by the interaction in the G or F form with the various ABPs. (Structure and Function of Actin by Wolfgang Kabsch) &lt;br /&gt;
The mechanism is controlled by Ca2+ stimulated myosin light chain kinase. MLCK regulates the coming together of myosin and actin filaments and controls the force with which they contract. Actin-myosin filament networks are found in cells such as neurons and epithelial cells that don’t require movement. These networks provide neurons the ability to stretch cell processes long distances. (Walter F., PhD. Boron (2003) Medical Physiology: A Cellular And Molecular Approaoch Elsevier/Saunders, pp. 1,300 ISBN:1-4160-2328-3. Page 28) In higher order eukaryotic cells, actin filaments and myosin II filaments often come together to perform a function and then disassemble. For example in cytokineses, actin and myosin II filaments organize to form a contractile ring. The ring exists beneath the plasma membrane and during the M-phase of cell division, the ring contracts, pulling the plasma membrane inward and constricts the middle of the cell, leading to an eventual separation into two daughter cells. http://www.ncbi.nlm.nih.gov/books/NBK28299/)  &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
==Medical Implications==&lt;br /&gt;
&lt;br /&gt;
Many of the functions of the cytoskeleton involve cytoskeleton and plasma membrane interactions. Proteins that exist between the two help to control cell shape, define the membrane domains and regulate cell/cell interactions and adhesion. There are at least 15 major protein species involved in the membrane-cytoskeleton of the human red blood cell. A mutation in any of these proteins can lead to cell fragility and cell death. Homologs of the erythrocyte membrane-skeleton can be found in many other cell types, which suggests the significance of these proteins. One of particular importance is the actin associated protein dystrophin. Dystrophin is an important part of the sarcolemmal membrane where it links the membrane to the sides of the actin filament bundles. Mutations in this protein leads to muscular dystrophies such as Duchenne’s disease or Becker muscular dystrophy. A homolog of dystrophin called utropin is thought to play a similar role in non-muscle cells.(http://www.cytoskeleton.com/actin?gclid=CNyRpoPC3a8CFeUEQAodTFkoCg)&lt;br /&gt;
  The genome of many mammals, including humans contains six actin genes, ACTA1, ACTA2, ACTB, ACTC, ACTG1 and ACTG2. Four of these are differentially expressed in cardiac (ACTC), smooth (ACTA2) enteric (ACTG2) and skeletal muscles (ACTA1); two are described as cytoplasmic actin genes (ACTB and ACTG1) and are expressed in all cells.  (Actin-Binding Proteins and Disease ) Actin mutations were not really known until the last 6-10 years. Mutations that have been found to cause human diseases have been found in the ACTC cardiac muscle gene which can cause dilated or hypertrophic cardiomyopathies including congenital fiber-type disproportion (CFTDP). Recently, mutations in ACTG1 have been associated with autosomal dominant deafness. Majority of actin disease mutations have been found to be dominant mutations. This has been the case for actin mutations is the Drosophila flight muscle-specific actin gene ACT88F. Scientists believe the common dominance of actin mutations is because the major functions of actin occur when it is in its F-form, associated with other proteins. The dominant actin mutations that lead to disease are mostly missense mutations. Actin mutations have been found in a variety of species such as yeast, nematodes and flies whose genomes are more accessible to mutagenesis. It is thought that there are three reasons why actin mutations are likely to be at very low frequencies in human populations: 1. actin is a ubiquitously expressed protein, 2. it is a highly conserved protein with many binding partners, so mutations in a large fraction of actin residues appear to cause a severe phenotype in humans and other organisms and 3. most actin mutations are dominant and given the usually severe effects, are not passed on to offspring. Thus familial actin mutants are likely to be relatively mild dominant alleles or recessive. Severe dominant alleles are likely to be de novo mutations. In the case of cytoplasmic actin, five ACT1G disease-causing mutant alleles are known so far and no disease-causing ACTB alleles have yet been described.&lt;br /&gt;
&lt;br /&gt;
==References==&lt;br /&gt;
&lt;br /&gt;
{{reflist}}&lt;br /&gt;
&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 18573073&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 8489492&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;Alberts, B., Johnson, A., Lewis, J., Raff, M., Roberts, K., &amp;amp; Walter, P. (2002). Molecular biology of the cell. (3 ed.). New York: Garland Science.&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 1388079&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 20672362&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 2673365&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 2395459&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 2395461&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 8970724 &amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 2395459&amp;lt;/ref&amp;gt; &lt;br /&gt;
&amp;lt;ref&amp;gt;Boron, W., &amp;amp; Boulpaep, E. (2008). Medical physiology. (2 ed., pp. 14-20). Saunders Elsevier. Retrieved from http://books.google.com/books/about/Medical_Physiology_E_Book.html?id=HlMJRw08ihgC&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;Remedios, C., &amp;amp; Chhabra, D. (2008). Actin-binding proteins and diseases. (8 ed., pp. 16-18). New York: Springer.&amp;lt;/ref&amp;gt;&lt;/div&gt;</summary>
		<author><name>Brittany Smith</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_471&amp;diff=1384385</id>
		<title>Sandbox Reserved 471</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_471&amp;diff=1384385"/>
		<updated>2012-05-02T14:47:17Z</updated>

		<summary type="html">&lt;p&gt;Brittany Smith: &lt;/p&gt;
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{{Sandbox_Reserved_Robert_B_Rose_1}}&lt;br /&gt;
&amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
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== Introduction ==&lt;br /&gt;
Actin is a spherical 43 kilo-Dalton protein that is found in many cell types. It belongs to the class of proteins known as [http://en.wikipedia.org/wiki/Motor_proteins motor proteins]. Motor proteins function in the movement of substances across a substrate by utilizing [http://en.wikipedia.org/wiki/Adenosine_triphosphate ATP] as an energy source. It is one of the most highly conserved proteins differing by no more than 20% in species ranging from yeast to humans. (&amp;quot;Mediation, Modulation and Consequences of Membrane-Cytoskeleton Interactions&amp;quot;.) In an alignment of the 81 unique actin protein sequences, scientists found that 17.4% of positions in the consensus sequence are invariant in all actins, 35.6 % of positions are invariant or have a difference in only one of the 81 actins, and 40.4% of positions are invariant or have what are considered conservative changes (Review Article Molecular genetics of actin function)   &lt;br /&gt;
Actin is the monomeric subunit of microfilaments, one of the three key components of the [http://en.wikipedia.org/wiki/Cytoskeleton cytoskeleton] and thin filaments, which is part of the contractile unit in muscle cells. The cytoskeleton is a three-dimensional complex of filamentous protein that creates the shape and structure of cells, as well as fills in the gaps between organelles. This is what provides the cells with motility. There are three main proteins that make up the cytoskeleton. They are microfilaments, intermediate filaments and microtubules.  (http://www.bms.ed.ac.uk/research/others/smaciver/lectures/Cs1.htm&lt;br /&gt;
An Introduction to the Cytoskeleton. CS1) Actin exists in two forms, the monomeric, globular form (G-actin) and the polymeric, filamentous form (F-actin). (Conformational Dynamics of Actin: Effectors and Implications for Biological Function)In vertebrates there are three main groups of actin isoforms which include alpha, beta, and gamma. These isotypes (α, β and γ), show &amp;gt;90% amino-acid homology between isotypes and &amp;gt;98% homology within members of a particular isotypic group. (http://www.cytoskeleton.com/actin?gclid=CNyRpoPC3a8CFeUEQAodTFkoCg)  The alpha actins, found in muscle tissues, are a major constituent of the contractile apparatus. The beta and gamma actins coexist in most cell types as components of the cytoskeleton, and as mediators of internal cell motility.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== History ==&lt;br /&gt;
&lt;br /&gt;
In 1942, [http://en.wikipedia.org/wiki/Brun%C3%B3_Ferenc_Straub Bruno Ferenc Straub] isolated actin as a water soluble component of muscle acetone powder. He found that at increased ionic strength the G-actin molecules would come together to form the F-actin filament. Actin was later found in non-muscle cells and its structure was seen through the use of [http://en.wikipedia.org/wiki/Immunofluorescence_microscopy immunofluorescence microscopy]. The next major accomplishment came with the discovery of the amino acid sequence. This allowed researchers to locate chemical and enzymatic alterations and to study how they affected the properties of the molecule. The high conservation of actin’s structure throughout various species was discovered through [http://en.wikipedia.org/wiki/Immunofluorescence_microscopy comparative sequence analysis]. In 1950, Straub reported that actin contained bound ATP and that during the polymerization of the monomers into microfilaments, the ATP was hydrolyzed to ADP and inorganic phosphate. (Straub FB, Feuer G (1989). &amp;quot;Adenosinetriphosphate. The functional group of actin. 1950&amp;quot;. Biochim. Biophys. Acta 1000: 180–95.PMID 2673365.) His discovery led to his suggestion that ATP-bound actin transforming into ADP-bound actin was what created muscle contractions. In the early 1980’s the principles of actin polymerization were exposed and the first actin-binding proteins (ABPs) were characterized according to their in vivo and in vitro functions. In 1990, the crystal structure of G-actin was solved by Kabsch. (Kabsch W, Mannherz HG, Suck D, Pai EF, Holmes KC (September 1990). &amp;quot;Atomic structure of the actin:DNase I complex&amp;quot;. Nature 347 (6288): 37–44. doi:10.1038/347037a0. PMID 2395459.) In this same year a model of F-actin was suggested by Holmes et al. The model was created by fitting a helix of G-actin structures according to low-resolution fiber diffraction data from the F-actin. ( Holmes KC, Popp D, Gebhard W, Kabsch W (September 1990). &amp;quot;Atomic model of the actin filament&amp;quot;. Nature 347 (6288): 44–9.doi:10.1038/347044a0. PMID 2395461.) Further advances in cryoelectron microscopy allowed scientists to find the binding sites for myosin and tropomyosin. A combination of [http://en.wikipedia.org/wiki/X-ray_crystallography X-ray crystallography] with fiber diffraction led to an atomic model of F-actin. (Structure and Function of Actin by Wolfgang Kabsch) After some debate actin also became generally accepted as an important structural and functional component of the cell nucleus (Conformational Dynamics of Actin: Effectors and Implications for Biological Function) Since this pioneering work by Straub, interest in actin has increased tremendously and so has the realization of how complex its structure is.&lt;br /&gt;
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&#039;&#039;&#039;&#039;&#039;Structure&#039;&#039;&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Actin exists in both its monomeric (globular, G-actin) and polymeric (filamentous or F-actin) form. The actin monomer is approximately pear shaped. Actin is composed of 376 residues that are folded into two large domains, each comprised of two subdomains. Its secondary structure is 41% helical (22 helices; 153 residues) and 20% beta sheet (20 strands; 77 residues). (PDB) The actin filament is a double-stranded, right-handed helix with a half-pitch of 37 nm and a one-start left-handed genetic helix with a rise of 2.75 nm per monomer. The width of the filament is within the range of 7–10 nm. (Conformational Dynamics of Actin: Effectors and Implications for Biological Function) The large domains are organized to form a hinged molecule with a deep cleft. Subdomains 1 and 3 are structurally related, whereas subdomains 2 and 4 can be viewed as large insertions into subdomains 1 and 3, respectively. There is moderately little contact between the two major domains of actin; the polypeptide chain passes twice between these domains at the loop centered at residue Lys336 and at the linker helix Gln137-Ser145, which functions as the hinge axis between the domains. As a result, two clefts are formed between the domains. Within the upper cleft are the cofactors, an adenine nucleotide and a divalent metal ion, usually magnesium. It is thought that the cofactors interact with the domains on either side, increasing their connectivity. The lower cleft between domains 1 and 3 is lined by residues Tyr143, Ala144, Gly146, Thr148, Gly168, Ile341, Ile345, Leu346, Leu349, Thr351, and Met355, which are predominantly hydrophobic. This cleft constitutes the major binding site for most ABPs, and is thus called the targetbinding or hydrophobic cleft. (Actin Structure and Function). Most of the interaction that occur in the subunit are electrostatic in character but there are also hydrophobic interactions.  (Actin Structure and Function)&lt;br /&gt;
Under physiologic conditions, G-actin is transformed to F-actin by ATP. After G-actin is bound to an ATP molecule it can then bind to another ATP bound monomer to form an unstable dimer. It can then add a third ATP bound monomer to create a stable trimer that serves as a basis for building fibrous actin (F-actin). Once the F-actin is formed the ATP can be hydrolyzed, keeping the bound ADP and releasing an inorganic phosphate. The polymer can undergo a process known as treadmilling. This is where the polymer continuously grows at its positive end but disassembles at its negative end. This process requires a permanent source of energy such as ATP (Walter F., PhD. Boron (2003) Medical Physiology: A Cellular And Molecular Approaoch Elsevier/Saunders, pp. 1,300 ISBN:1-4160-2328-3. Page 28) &lt;br /&gt;
Unlike G-actin, F-actin does not form crystalline arrays that can be analyzed by X-ray crystallography. Instead it can be found by using fiber diffraction, electron-microscopy data and mathematical models. The structure can then be refined and remodeled as necessary. (ACTIN: General Principles from Studies in Yeast) The first high-resolution structural model of the actin filament was at a resolution of 8 A ˚ and was proposed by Holmes et al., 1990. Recently, an improved high-resolution F-actin model was created by Oda et al., 2009 with a resolution of 3.3 A ˚ in the radial and 5.6 A ˚ in the equatorial directions. &lt;br /&gt;
Vertebrates express three main actin isoforms, including three α-isoforms of skeletal, cardiac, and smooth muscles and the β- and γ- isoforms expressed in nonmuscle and muscle cells. Actin isoforms are different in a few of its amino acids, with most variations occurring toward the N terminus. Actin also undergoes various forms of posttranslational modifications. For instance, His73 of skeletal muscle α-actin is methylated, the N-terminal methionine and cysteine residues are acetylated and cleaved, and the resulting N-terminal aspartic acid is then re-acetylated. Since the original determination of the crystal structure of G-actin, over 80 structures of actin have been reported.  The majority of these structures have been obtained as complexes with actin-binding proteins (ABPs). (Actin Structure and Function)&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;&#039;&#039;Mechanism of Action&#039;&#039;&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
Polymerization mechanism&lt;br /&gt;
At increased ionic strength, G-actin molecules polymerize into filaments, known as F-actin. F-actin is the main component of the thin filaments in sarcomeres of muscle cells. Muscle sarcomeres use ATP hydrolysis to produce conrtractions by sliding the thin actin filament&lt;br /&gt;
past thick myosin filaments. The entire process is initiated by the slow formation of actin dimmers and trimers. These serve as a base for filament elongation. During elongation more actin monomers associate to than dissociate from either of the two ends, which results in the net growth of both filament ends. The steady-state phase is characterised by a dynamic equilibrium where the length of the actin filaments remains constant. This means while monomers are associating, other monomers are dissociating from the ends. In this dynamic equilibrium a stationery population of free actin monomers is established and is called the critical concentration. The polarity of the ends of the actin filaments play a key role in elongation. The ends of the filament are referred to as &amp;quot;barbed&amp;quot; and &amp;quot;pointed&amp;quot; according to the polarity of the arrowhead-like structure generated on binding with myosin subfragment 1. ) (Structure and Function of Actin by Wolfgang Kabsch) The barbed or plus end binds actin monomers faster than the pointed or minus end. Although its ATPase activity is not crucial for actin polymerisation, actin self-assembly is associated with the ATPase cycle, which powers this treadmilling process (Conformational Dynamics of Actin: Effectors and Implications for Biological Function) After the actin molecule is changed into a filament, the bound ATP is hydrolysed to ADP and inorganic phosphate is realeased. (Structure and Function of Actin by Wolfgang Kabsch) The formation of the F-actin is what stimulates the actin ATPase. The release of the  inorganic phosphate happens more slowly than the formation of the filament so that the growing filament has a cap of ATPactin at its barbed end, while monomers containing ADP and inorganic phosphate accumulate in the rest of the filament. &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
The mature filament contains only ADP-actin. The tendency of actin to polymerize depends upon the affinity of actin monomers for filament ends. There is an actin monomer concentration below which actin will not polymerize known as the Critical Concentration (CC). At monomer concentrations above the CC, the actin will polymerize until the free monomer concentration is equal to the CC. (http://www.ncbi.nlm.nih.gov/books/NBK28299/) It is thought that the strong binding to the ATP is due to the amide proton of a serine 14 amino acid forming hydrogen bonds with the phosphate of ATP, thus stabilizing the nucleotide protein complex. (ACTIN: General Principles from Studies in Yeast). Pure actin can be switched between these states in the test-tube by altering the salt concentration. Actin in low salt conditions is in the G-state, while adding salts causes the actin to polymerise.   (http://www.bms.ed.ac.uk/research/others/smaciver/lectures/Cs1.htm Because actin polymerization is reversible, filaments can depolymerize by the dissociation of actin subunits, allowing actin filaments to be broken down when necessary. Therefore an apparent equilibrium exists between actin monomers and filaments, which is dependent on the concentration of free monomers. At this critical concentration, monomers and filaments are in apparent equilibrium.(Structure and Organization of Actin Filament)&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;&#039;&#039;Function&#039;&#039;&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
Studies of actin have shown that it has many functions within living cells. This range of functions is due to the diverse morphology of its structures and its interactions with actin-binding proteins (ABPs). (Conformational Dynamics of Actin: Effectors and Implications for Biological Function) The diversity in the functional ability of actin proteins is due in part to its interaction with actin-binding proteins. F-actin and G-actin interact with a wide array of proteins. There are over 150 known actin binding proteins (ABPs), which makes up 25% of cellular protein.  (http://www.cytoskeleton.com/actin?gclid=CNyRpoPC3a8CFeUEQAodTFkoCg) Actin has proved to be an important component in the cytoskeleton. The actin cytoskeleton is known as the microfilament and has a multi-purpose role in important cell processes such as maintaining cellular polarity, cell shape, cell motility, adhesion, cytokinesis and endocytosis. (Conformational Dynamics of Actin: Effectors and Implications for Biological Function)  Myosin molecules are a class of actin motors that aid in creating movement by “walking” across actin filaments and contracting muscle tissues. Microfilaments, also known as thin filaments are helical polymers composed of globular actin (G-actin). The polymers are polar and bind to nucleotides such as ATP in order to hydrolyze them. (Walter F., PhD. Boron (2003) Medical Physiology: A Cellular And Molecular Approaoch Elsevier/Saunders, pp. 1,300 ISBN:1-4160-2328-3. Page 28) Actin has no important enzymatic activity, however, it inhibits DNase I and activates the myosin ATPase. Actin filaments activate the Mg2+ ATPase activity and the movement of myosin along actin filaments produces the force for muscle contraction and other cell movements. Motility mechanisms which involve actin are controlled by the interaction in the G or F form with the various ABPs. (Structure and Function of Actin by Wolfgang Kabsch) &lt;br /&gt;
The mechanism is controlled by Ca2+ stimulated myosin light chain kinase. MLCK regulates the coming together of myosin and actin filaments and controls the force with which they contract. Actin-myosin filament networks are found in cells such as neurons and epithelial cells that don’t require movement. These networks provide neurons the ability to stretch cell processes long distances. (Walter F., PhD. Boron (2003) Medical Physiology: A Cellular And Molecular Approaoch Elsevier/Saunders, pp. 1,300 ISBN:1-4160-2328-3. Page 28) In higher order eukaryotic cells, actin filaments and myosin II filaments often come together to perform a function and then disassemble. For example in cytokineses, actin and myosin II filaments organize to form a contractile ring. The ring exists beneath the plasma membrane and during the M-phase of cell division, the ring contracts, pulling the plasma membrane inward and constricts the middle of the cell, leading to an eventual separation into two daughter cells. http://www.ncbi.nlm.nih.gov/books/NBK28299/)  &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;&#039;&#039;Medical Implications&#039;&#039;&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
Many of the functions of the cytoskeleton involve cytoskeleton and plasma membrane interactions. Proteins that exist between the two help to control cell shape, define the membrane domains and regulate cell/cell interactions and adhesion. There are at least 15 major protein species involved in the membrane-cytoskeleton of the human red blood cell. A mutation in any of these proteins can lead to cell fragility and cell death. Homologs of the erythrocyte membrane-skeleton can be found in many other cell types, which suggests the significance of these proteins. One of particular importance is the actin associated protein dystrophin. Dystrophin is an important part of the sarcolemmal membrane where it links the membrane to the sides of the actin filament bundles. Mutations in this protein leads to muscular dystrophies such as Duchenne’s disease or Becker muscular dystrophy. A homolog of dystrophin called utropin is thought to play a similar role in non-muscle cells.(http://www.cytoskeleton.com/actin?gclid=CNyRpoPC3a8CFeUEQAodTFkoCg)&lt;br /&gt;
  The genome of many mammals, including humans contains six actin genes, ACTA1, ACTA2, ACTB, ACTC, ACTG1 and ACTG2. Four of these are differentially expressed in cardiac (ACTC), smooth (ACTA2) enteric (ACTG2) and skeletal muscles (ACTA1); two are described as cytoplasmic actin genes (ACTB and ACTG1) and are expressed in all cells.  (Actin-Binding Proteins and Disease ) Actin mutations were not really known until the last 6-10 years. Mutations that have been found to cause human diseases have been found in the ACTC cardiac muscle gene which can cause dilated or hypertrophic cardiomyopathies including congenital fiber-type disproportion (CFTDP). Recently, mutations in ACTG1 have been associated with autosomal dominant deafness. Majority of actin disease mutations have been found to be dominant mutations. This has been the case for actin mutations is the Drosophila flight muscle-specific actin gene ACT88F. Scientists believe the common dominance of actin mutations is because the major functions of actin occur when it is in its F-form, associated with other proteins. The dominant actin mutations that lead to disease are mostly missense mutations. Actin mutations have been found in a variety of species such as yeast, nematodes and flies whose genomes are more accessible to mutagenesis. It is thought that there are three reasons why actin mutations are likely to be at very low frequencies in human populations: 1. actin is a ubiquitously expressed protein, 2. it is a highly conserved protein with many binding partners, so mutations in a large fraction of actin residues appear to cause a severe phenotype in humans and other organisms and 3. most actin mutations are dominant and given the usually severe effects, are not passed on to offspring. Thus familial actin mutants are likely to be relatively mild dominant alleles or recessive. Severe dominant alleles are likely to be de novo mutations. In the case of cytoplasmic actin, five ACT1G disease-causing mutant alleles are known so far and no disease-causing ACTB alleles have yet been described.&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;&#039;&#039;References&#039;&#039;&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
{{reflist}}&lt;br /&gt;
&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 18573073&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 8489492&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;Alberts, B., Johnson, A., Lewis, J., Raff, M., Roberts, K., &amp;amp; Walter, P. (2002). Molecular biology of the cell. (3 ed.). New York: Garland Science.&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 1388079&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 20672362&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 2673365&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 2395459&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 2395461&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 8970724 &amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 2395459&amp;lt;/ref&amp;gt; &lt;br /&gt;
&amp;lt;ref&amp;gt;Boron, W., &amp;amp; Boulpaep, E. (2008). Medical physiology. (2 ed., pp. 14-20). Saunders Elsevier. Retrieved from http://books.google.com/books/about/Medical_Physiology_E_Book.html?id=HlMJRw08ihgC&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;Remedios, C., &amp;amp; Chhabra, D. (2008). Actin-binding proteins and diseases. (8 ed., pp. 16-18). New York: Springer.&amp;lt;/ref&amp;gt;&lt;/div&gt;</summary>
		<author><name>Brittany Smith</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_471&amp;diff=1384380</id>
		<title>Sandbox Reserved 471</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_471&amp;diff=1384380"/>
		<updated>2012-05-02T14:44:19Z</updated>

		<summary type="html">&lt;p&gt;Brittany Smith: &lt;/p&gt;
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{{Sandbox_Reserved_Robert_B_Rose_1}}&lt;br /&gt;
&amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
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== Introduction ==&lt;br /&gt;
Actin is a spherical 43 kilo-Dalton protein that is found in many cell types. It belongs to the class of proteins known as [http://en.wikipedia.org/wiki/Motor_proteins motor proteins]. Motor proteins function in the movement of substances across a substrate by utilizing [http://en.wikipedia.org/wiki/Adenosine_triphosphate ATP] as an energy source. It is one of the most highly conserved proteins differing by no more than 20% in species ranging from yeast to humans. (&amp;quot;Mediation, Modulation and Consequences of Membrane-Cytoskeleton Interactions&amp;quot;.) In an alignment of the 81 unique actin protein sequences, scientists found that 17.4% of positions in the consensus sequence are invariant in all actins, 35.6 % of positions are invariant or have a difference in only one of the 81 actins, and 40.4% of positions are invariant or have what are considered conservative changes (Review Article Molecular genetics of actin function)   &lt;br /&gt;
Actin is the monomeric subunit of microfilaments, one of the three key components of the [http://en.wikipedia.org/wiki/Cytoskeleton cytoskeleton] and thin filaments, which is part of the contractile unit in muscle cells. The cytoskeleton is a three-dimensional complex of filamentous protein that creates the shape and structure of cells, as well as fills in the gaps between organelles. This is what provides the cells with motility. There are three main proteins that make up the cytoskeleton. They are microfilaments, intermediate filaments and microtubules.  (http://www.bms.ed.ac.uk/research/others/smaciver/lectures/Cs1.htm&lt;br /&gt;
An Introduction to the Cytoskeleton. CS1) Actin exists in two forms, the monomeric, globular form (G-actin) and the polymeric, filamentous form (F-actin). (Conformational Dynamics of Actin: Effectors and Implications for Biological Function)In vertebrates there are three main groups of actin isoforms which include alpha, beta, and gamma. These isotypes (α, β and γ), show &amp;gt;90% amino-acid homology between isotypes and &amp;gt;98% homology within members of a particular isotypic group. (http://www.cytoskeleton.com/actin?gclid=CNyRpoPC3a8CFeUEQAodTFkoCg)  The alpha actins, found in muscle tissues, are a major constituent of the contractile apparatus. The beta and gamma actins coexist in most cell types as components of the cytoskeleton, and as mediators of internal cell motility.&lt;br /&gt;
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== History ==&lt;br /&gt;
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In 1942, [http://en.wikipedia.org/wiki/Brun%C3%B3_Ferenc_Straub Bruno Ferenc Straub] isolated actin as a water soluble component of muscle acetone powder. He found that at increased ionic strength the G-actin molecules would come together to form the F-actin filament. Actin was later found in non-muscle cells and its structure was seen through the use of [http://en.wikipedia.org/wiki/Immunofluorescence_microscopy immunofluorescence microscopy]. The next major accomplishment came with the discovery of the amino acid sequence. This allowed researchers to locate chemical and enzymatic alterations and to study how they affected the properties of the molecule. The high conservation of actin’s structure throughout various species was discovered through [http://en.wikipedia.org/wiki/Immunofluorescence_microscopy comparative sequence analysis]. In 1950, Straub reported that actin contained bound ATP and that during the polymerization of the monomers into microfilaments, the ATP was hydrolyzed to ADP and inorganic phosphate. (Straub FB, Feuer G (1989). &amp;quot;Adenosinetriphosphate. The functional group of actin. 1950&amp;quot;. Biochim. Biophys. Acta 1000: 180–95.PMID 2673365.) His discovery led to his suggestion that ATP-bound actin transforming into ADP-bound actin was what created muscle contractions. In the early 1980’s the principles of actin polymerization were exposed and the first actin-binding proteins (ABPs) were characterized according to their in vivo and in vitro functions. In 1990, the crystal structure of G-actin was solved by Kabsch. (Kabsch W, Mannherz HG, Suck D, Pai EF, Holmes KC (September 1990). &amp;quot;Atomic structure of the actin:DNase I complex&amp;quot;. Nature 347 (6288): 37–44. doi:10.1038/347037a0. PMID 2395459.) In this same year a model of F-actin was suggested by Holmes et al. The model was created by fitting a helix of G-actin structures according to low-resolution fiber diffraction data from the F-actin. ( Holmes KC, Popp D, Gebhard W, Kabsch W (September 1990). &amp;quot;Atomic model of the actin filament&amp;quot;. Nature 347 (6288): 44–9.doi:10.1038/347044a0. PMID 2395461.) Further advances in cryoelectron microscopy allowed scientists to find the binding sites for myosin and tropomyosin. A combination of [http://en.wikipedia.org/wiki/X-ray_crystallography X-ray crystallography] with fiber diffraction led to an atomic model of F-actin. (Structure and Function of Actin by Wolfgang Kabsch) After some debate actin also became generally accepted as an important structural and functional component of the cell nucleus (Conformational Dynamics of Actin: Effectors and Implications for Biological Function) Since this pioneering work by Straub, interest in actin has increased tremendously and so has the realization of how complex its structure is.&lt;br /&gt;
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&#039;&#039;&#039;&#039;&#039;Structure&#039;&#039;&#039;&#039;&#039;&lt;br /&gt;
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[[Image:Actin Image.gif]]&lt;br /&gt;
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Actin exists in both its monomeric (globular, G-actin) and polymeric (filamentous or F-actin) form. The actin monomer is approximately pear shaped. Actin is composed of 376 residues that are folded into two large domains, each comprised of two subdomains. Its secondary structure is 41% helical (22 helices; 153 residues) and 20% beta sheet (20 strands; 77 residues). (PDB) The actin filament is a double-stranded, right-handed helix with a half-pitch of 37 nm and a one-start left-handed genetic helix with a rise of 2.75 nm per monomer. The width of the filament is within the range of 7–10 nm. (Conformational Dynamics of Actin: Effectors and Implications for Biological Function) The large domains are organized to form a hinged molecule with a deep cleft. Subdomains 1 and 3 are structurally related, whereas subdomains 2 and 4 can be viewed as large insertions into subdomains 1 and 3, respectively. There is moderately little contact between the two major domains of actin; the polypeptide chain passes twice between these domains at the loop centered at residue Lys336 and at the linker helix Gln137-Ser145, which functions as the hinge axis between the domains. As a result, two clefts are formed between the domains. Within the upper cleft are the cofactors, an adenine nucleotide and a divalent metal ion, usually magnesium. It is thought that the cofactors interact with the domains on either side, increasing their connectivity. The lower cleft between domains 1 and 3 is lined by residues Tyr143, Ala144, Gly146, Thr148, Gly168, Ile341, Ile345, Leu346, Leu349, Thr351, and Met355, which are predominantly hydrophobic. This cleft constitutes the major binding site for most ABPs, and is thus called the targetbinding or hydrophobic cleft. (Actin Structure and Function). Most of the interaction that occur in the subunit are electrostatic in character but there are also hydrophobic interactions.  (Actin Structure and Function)&lt;br /&gt;
Under physiologic conditions, G-actin is transformed to F-actin by ATP. After G-actin is bound to an ATP molecule it can then bind to another ATP bound monomer to form an unstable dimer. It can then add a third ATP bound monomer to create a stable trimer that serves as a basis for building fibrous actin (F-actin). Once the F-actin is formed the ATP can be hydrolyzed, keeping the bound ADP and releasing an inorganic phosphate. The polymer can undergo a process known as treadmilling. This is where the polymer continuously grows at its positive end but disassembles at its negative end. This process requires a permanent source of energy such as ATP (Walter F., PhD. Boron (2003) Medical Physiology: A Cellular And Molecular Approaoch Elsevier/Saunders, pp. 1,300 ISBN:1-4160-2328-3. Page 28) &lt;br /&gt;
Unlike G-actin, F-actin does not form crystalline arrays that can be analyzed by X-ray crystallography. Instead it can be found by using fiber diffraction, electron-microscopy data and mathematical models. The structure can then be refined and remodeled as necessary. (ACTIN: General Principles from Studies in Yeast) The first high-resolution structural model of the actin filament was at a resolution of 8 A ˚ and was proposed by Holmes et al., 1990. Recently, an improved high-resolution F-actin model was created by Oda et al., 2009 with a resolution of 3.3 A ˚ in the radial and 5.6 A ˚ in the equatorial directions. &lt;br /&gt;
Vertebrates express three main actin isoforms, including three α-isoforms of skeletal, cardiac, and smooth muscles and the β- and γ- isoforms expressed in nonmuscle and muscle cells. Actin isoforms are different in a few of its amino acids, with most variations occurring toward the N terminus. Actin also undergoes various forms of posttranslational modifications. For instance, His73 of skeletal muscle α-actin is methylated, the N-terminal methionine and cysteine residues are acetylated and cleaved, and the resulting N-terminal aspartic acid is then re-acetylated. Since the original determination of the crystal structure of G-actin, over 80 structures of actin have been reported.  The majority of these structures have been obtained as complexes with actin-binding proteins (ABPs). (Actin Structure and Function)&lt;br /&gt;
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&#039;&#039;&#039;&#039;&#039;Mechanism of Action&#039;&#039;&#039;&#039;&#039;&lt;br /&gt;
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Polymerization mechanism&lt;br /&gt;
At increased ionic strength, G-actin molecules polymerize into filaments, known as F-actin. F-actin is the main component of the thin filaments in sarcomeres of muscle cells. Muscle sarcomeres use ATP hydrolysis to produce conrtractions by sliding the thin actin filament&lt;br /&gt;
past thick myosin filaments. The entire process is initiated by the slow formation of actin dimmers and trimers. These serve as a base for filament elongation. During elongation more actin monomers associate to than dissociate from either of the two ends, which results in the net growth of both filament ends. The steady-state phase is characterised by a dynamic equilibrium where the length of the actin filaments remains constant. This means while monomers are associating, other monomers are dissociating from the ends. In this dynamic equilibrium a stationery population of free actin monomers is established and is called the critical concentration. The polarity of the ends of the actin filaments play a key role in elongation. The ends of the filament are referred to as &amp;quot;barbed&amp;quot; and &amp;quot;pointed&amp;quot; according to the polarity of the arrowhead-like structure generated on binding with myosin subfragment 1. ) (Structure and Function of Actin by Wolfgang Kabsch) The barbed or plus end binds actin monomers faster than the pointed or minus end. Although its ATPase activity is not crucial for actin polymerisation, actin self-assembly is associated with the ATPase cycle, which powers this treadmilling process (Conformational Dynamics of Actin: Effectors and Implications for Biological Function) After the actin molecule is changed into a filament, the bound ATP is hydrolysed to ADP and inorganic phosphate is realeased. (Structure and Function of Actin by Wolfgang Kabsch) The formation of the F-actin is what stimulates the actin ATPase. The release of the  inorganic phosphate happens more slowly than the formation of the filament so that the growing filament has a cap of ATPactin at its barbed end, while monomers containing ADP and inorganic phosphate accumulate in the rest of the filament. &lt;br /&gt;
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The mature filament contains only ADP-actin. The tendency of actin to polymerize depends upon the affinity of actin monomers for filament ends. There is an actin monomer concentration below which actin will not polymerize known as the Critical Concentration (CC). At monomer concentrations above the CC, the actin will polymerize until the free monomer concentration is equal to the CC. (http://www.ncbi.nlm.nih.gov/books/NBK28299/) It is thought that the strong binding to the ATP is due to the amide proton of a serine 14 amino acid forming hydrogen bonds with the phosphate of ATP, thus stabilizing the nucleotide protein complex. (ACTIN: General Principles from Studies in Yeast). Pure actin can be switched between these states in the test-tube by altering the salt concentration. Actin in low salt conditions is in the G-state, while adding salts causes the actin to polymerise.   (http://www.bms.ed.ac.uk/research/others/smaciver/lectures/Cs1.htm Because actin polymerization is reversible, filaments can depolymerize by the dissociation of actin subunits, allowing actin filaments to be broken down when necessary. Therefore an apparent equilibrium exists between actin monomers and filaments, which is dependent on the concentration of free monomers. At this critical concentration, monomers and filaments are in apparent equilibrium.(Structure and Organization of Actin Filament)&lt;br /&gt;
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&#039;&#039;&#039;&#039;&#039;Function&#039;&#039;&#039;&#039;&#039;&lt;br /&gt;
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Studies of actin have shown that it has many functions within living cells. This range of functions is due to the diverse morphology of its structures and its interactions with actin-binding proteins (ABPs). (Conformational Dynamics of Actin: Effectors and Implications for Biological Function) The diversity in the functional ability of actin proteins is due in part to its interaction with actin-binding proteins. F-actin and G-actin interact with a wide array of proteins. There are over 150 known actin binding proteins (ABPs), which makes up 25% of cellular protein.  (http://www.cytoskeleton.com/actin?gclid=CNyRpoPC3a8CFeUEQAodTFkoCg) Actin has proved to be an important component in the cytoskeleton. The actin cytoskeleton is known as the microfilament and has a multi-purpose role in important cell processes such as maintaining cellular polarity, cell shape, cell motility, adhesion, cytokinesis and endocytosis. (Conformational Dynamics of Actin: Effectors and Implications for Biological Function)  Myosin molecules are a class of actin motors that aid in creating movement by “walking” across actin filaments and contracting muscle tissues. Microfilaments, also known as thin filaments are helical polymers composed of globular actin (G-actin). The polymers are polar and bind to nucleotides such as ATP in order to hydrolyze them. (Walter F., PhD. Boron (2003) Medical Physiology: A Cellular And Molecular Approaoch Elsevier/Saunders, pp. 1,300 ISBN:1-4160-2328-3. Page 28) Actin has no important enzymatic activity, however, it inhibits DNase I and activates the myosin ATPase. Actin filaments activate the Mg2+ ATPase activity and the movement of myosin along actin filaments produces the force for muscle contraction and other cell movements. Motility mechanisms which involve actin are controlled by the interaction in the G or F form with the various ABPs. (Structure and Function of Actin by Wolfgang Kabsch) &lt;br /&gt;
The mechanism is controlled by Ca2+ stimulated myosin light chain kinase. MLCK regulates the coming together of myosin and actin filaments and controls the force with which they contract. Actin-myosin filament networks are found in cells such as neurons and epithelial cells that don’t require movement. These networks provide neurons the ability to stretch cell processes long distances. (Walter F., PhD. Boron (2003) Medical Physiology: A Cellular And Molecular Approaoch Elsevier/Saunders, pp. 1,300 ISBN:1-4160-2328-3. Page 28) In higher order eukaryotic cells, actin filaments and myosin II filaments often come together to perform a function and then disassemble. For example in cytokineses, actin and myosin II filaments organize to form a contractile ring. The ring exists beneath the plasma membrane and during the M-phase of cell division, the ring contracts, pulling the plasma membrane inward and constricts the middle of the cell, leading to an eventual separation into two daughter cells. http://www.ncbi.nlm.nih.gov/books/NBK28299/)  &lt;br /&gt;
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&#039;&#039;&#039;&#039;&#039;Medical Implications&#039;&#039;&#039;&#039;&#039;&lt;br /&gt;
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Many of the functions of the cytoskeleton involve cytoskeleton and plasma membrane interactions. Proteins that exist between the two help to control cell shape, define the membrane domains and regulate cell/cell interactions and adhesion. There are at least 15 major protein species involved in the membrane-cytoskeleton of the human red blood cell. A mutation in any of these proteins can lead to cell fragility and cell death. Homologs of the erythrocyte membrane-skeleton can be found in many other cell types, which suggests the significance of these proteins. One of particular importance is the actin associated protein dystrophin. Dystrophin is an important part of the sarcolemmal membrane where it links the membrane to the sides of the actin filament bundles. Mutations in this protein leads to muscular dystrophies such as Duchenne’s disease or Becker muscular dystrophy. A homolog of dystrophin called utropin is thought to play a similar role in non-muscle cells.(http://www.cytoskeleton.com/actin?gclid=CNyRpoPC3a8CFeUEQAodTFkoCg)&lt;br /&gt;
  The genome of many mammals, including humans contains six actin genes, ACTA1, ACTA2, ACTB, ACTC, ACTG1 and ACTG2. Four of these are differentially expressed in cardiac (ACTC), smooth (ACTA2) enteric (ACTG2) and skeletal muscles (ACTA1); two are described as cytoplasmic actin genes (ACTB and ACTG1) and are expressed in all cells.  (Actin-Binding Proteins and Disease ) Actin mutations were not really known until the last 6-10 years. Mutations that have been found to cause human diseases have been found in the ACTC cardiac muscle gene which can cause dilated or hypertrophic cardiomyopathies including congenital fiber-type disproportion (CFTDP). Recently, mutations in ACTG1 have been associated with autosomal dominant deafness. Majority of actin disease mutations have been found to be dominant mutations. This has been the case for actin mutations is the Drosophila flight muscle-specific actin gene ACT88F. Scientists believe the common dominance of actin mutations is because the major functions of actin occur when it is in its F-form, associated with other proteins. The dominant actin mutations that lead to disease are mostly missense mutations. Actin mutations have been found in a variety of species such as yeast, nematodes and flies whose genomes are more accessible to mutagenesis. It is thought that there are three reasons why actin mutations are likely to be at very low frequencies in human populations: 1. actin is a ubiquitously expressed protein, 2. it is a highly conserved protein with many binding partners, so mutations in a large fraction of actin residues appear to cause a severe phenotype in humans and other organisms and 3. most actin mutations are dominant and given the usually severe effects, are not passed on to offspring. Thus familial actin mutants are likely to be relatively mild dominant alleles or recessive. Severe dominant alleles are likely to be de novo mutations. In the case of cytoplasmic actin, five ACT1G disease-causing mutant alleles are known so far and no disease-causing ACTB alleles have yet been described.&lt;br /&gt;
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&#039;&#039;&#039;&#039;&#039;References&#039;&#039;&#039;&#039;&#039;&lt;br /&gt;
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{{reflist}}&lt;br /&gt;
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&amp;lt;ref&amp;gt;PMID: 18573073&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 8489492&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;Alberts, B., Johnson, A., Lewis, J., Raff, M., Roberts, K., &amp;amp; Walter, P. (2002). Molecular biology of the cell. (3 ed.). New York: Garland Science.&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 1388079&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 20672362&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 2673365&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 2395459&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 2395461&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 8970724 &amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 2395459&amp;lt;/ref&amp;gt; &lt;br /&gt;
&amp;lt;ref&amp;gt;Boron, W., &amp;amp; Boulpaep, E. (2008). Medical physiology. (2 ed., pp. 14-20). Saunders Elsevier. Retrieved from http://books.google.com/books/about/Medical_Physiology_E_Book.html?id=HlMJRw08ihgC&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;Remedios, C., &amp;amp; Chhabra, D. (2008). Actin-binding proteins and diseases. (8 ed., pp. 16-18). New York: Springer.&amp;lt;/ref&amp;gt;&lt;/div&gt;</summary>
		<author><name>Brittany Smith</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_471&amp;diff=1384379</id>
		<title>Sandbox Reserved 471</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_471&amp;diff=1384379"/>
		<updated>2012-05-02T14:43:19Z</updated>

		<summary type="html">&lt;p&gt;Brittany Smith: &lt;/p&gt;
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&lt;div&gt;&amp;lt;Structure load=&#039;3hbt&#039; size=&#039;500&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;Globular actin (G-actin) in its native conformation&#039; scene=&#039;Insert optional scene name here&#039; /&amp;gt; &lt;br /&gt;
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{{Sandbox_Reserved_Robert_B_Rose_1}}&lt;br /&gt;
&amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
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== Introduction ==&lt;br /&gt;
Actin is a spherical 43 kilo-Dalton protein that is found in many cell types. It belongs to the class of proteins known as [http://en.wikipedia.org/wiki/Motor_proteins motor proteins]. Motor proteins function in the movement of substances across a substrate by utilizing [http://en.wikipedia.org/wiki/Adenosine_triphosphate ATP] as an energy source. It is one of the most highly conserved proteins differing by no more than 20% in species ranging from yeast to humans. (&amp;quot;Mediation, Modulation and Consequences of Membrane-Cytoskeleton Interactions&amp;quot;.) In an alignment of the 81 unique actin protein sequences, scientists found that 17.4% of positions in the consensus sequence are invariant in all actins, 35.6 % of positions are invariant or have a difference in only one of the 81 actins, and 40.4% of positions are invariant or have what are considered conservative changes (Review Article Molecular genetics of actin function)   &lt;br /&gt;
Actin is the monomeric subunit of microfilaments, one of the three key components of the [http://en.wikipedia.org/wiki/Cytoskeleton cytoskeleton] and thin filaments, which is part of the contractile unit in muscle cells. The cytoskeleton is a three-dimensional complex of filamentous protein that creates the shape and structure of cells, as well as fills in the gaps between organelles. This is what provides the cells with motility. There are three main proteins that make up the cytoskeleton. They are microfilaments, intermediate filaments and microtubules.  (http://www.bms.ed.ac.uk/research/others/smaciver/lectures/Cs1.htm&lt;br /&gt;
An Introduction to the Cytoskeleton. CS1) Actin exists in two forms, the monomeric, globular form (G-actin) and the polymeric, filamentous form (F-actin). (Conformational Dynamics of Actin: Effectors and Implications for Biological Function)In vertebrates there are three main groups of actin isoforms which include alpha, beta, and gamma. These isotypes (α, β and γ), show &amp;gt;90% amino-acid homology between isotypes and &amp;gt;98% homology within members of a particular isotypic group. (http://www.cytoskeleton.com/actin?gclid=CNyRpoPC3a8CFeUEQAodTFkoCg)  The alpha actins, found in muscle tissues, are a major constituent of the contractile apparatus. The beta and gamma actins coexist in most cell types as components of the cytoskeleton, and as mediators of internal cell motility.&lt;br /&gt;
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== History ==&lt;br /&gt;
&lt;br /&gt;
In 1942, [http://en.wikipedia.org/wiki/Brun%C3%B3_Ferenc_Straub Bruno Ferenc Straub] isolated actin as a water soluble component of muscle acetone powder. He found that at increased ionic strength the G-actin molecules would come together to form the F-actin filament. Actin was later found in non-muscle cells and its structure was seen through the use of [http://en.wikipedia.org/wiki/Immunofluorescence_microscopy immunofluorescence microscopy]. The next major accomplishment came with the discovery of the amino acid sequence. This allowed researchers to locate chemical and enzymatic alterations and to study how they affected the properties of the molecule. The high conservation of actin’s structure throughout various species was discovered through [http://en.wikipedia.org/wiki/Immunofluorescence_microscopy comparative sequence analysis]. In 1950, Straub reported that actin contained bound ATP and that during the polymerization of the monomers into microfilaments, the ATP was hydrolyzed to ADP and inorganic phosphate. (Straub FB, Feuer G (1989). &amp;quot;Adenosinetriphosphate. The functional group of actin. 1950&amp;quot;. Biochim. Biophys. Acta 1000: 180–95.PMID 2673365.) His discovery led to his suggestion that ATP-bound actin transforming into ADP-bound actin was what created muscle contractions. In the early 1980’s the principles of actin polymerization were exposed and the first actin-binding proteins (ABPs) were characterized according to their in vivo and in vitro functions. In 1990, the crystal structure of G-actin was solved by Kabsch. (Kabsch W, Mannherz HG, Suck D, Pai EF, Holmes KC (September 1990). &amp;quot;Atomic structure of the actin:DNase I complex&amp;quot;. Nature 347 (6288): 37–44. doi:10.1038/347037a0. PMID 2395459.) In this same year a model of F-actin was suggested by Holmes et al. The model was created by fitting a helix of G-actin structures according to low-resolution fiber diffraction data from the F-actin. ( Holmes KC, Popp D, Gebhard W, Kabsch W (September 1990). &amp;quot;Atomic model of the actin filament&amp;quot;. Nature 347 (6288): 44–9.doi:10.1038/347044a0. PMID 2395461.) Further advances in cryoelectron microscopy allowed scientists to find the binding sites for myosin and tropomyosin. A combination of [http://en.wikipedia.org/wiki/X-ray_crystallography X-ray crystallography] with fiber diffraction led to an atomic model of F-actin. (Structure and Function of Actin by Wolfgang Kabsch) After some debate actin also became generally accepted as an important structural and functional component of the cell nucleus (Conformational Dynamics of Actin: Effectors and Implications for Biological Function) Since this pioneering work by Straub, interest in actin has increased tremendously and so has the realization of how complex its structure is.&lt;br /&gt;
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&#039;&#039;&#039;&#039;&#039;Structure&#039;&#039;&#039;&#039;&#039;&lt;br /&gt;
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[[Image:Actin Image.gif]]&lt;br /&gt;
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Actin exists in both its monomeric (globular, G-actin) and polymeric (filamentous or F-actin) form. The actin monomer is approximately pear shaped. Actin is composed of 376 residues that are folded into two large domains, each comprised of two subdomains. Its secondary structure is 41% helical (22 helices; 153 residues) and 20% beta sheet (20 strands; 77 residues). (PDB) The actin filament is a double-stranded, right-handed helix with a half-pitch of 37 nm and a one-start left-handed genetic helix with a rise of 2.75 nm per monomer. The width of the filament is within the range of 7–10 nm. (Conformational Dynamics of Actin: Effectors and Implications for Biological Function) The large domains are organized to form a hinged molecule with a deep cleft. Subdomains 1 and 3 are structurally related, whereas subdomains 2 and 4 can be viewed as large insertions into subdomains 1 and 3, respectively. There is moderately little contact between the two major domains of actin; the polypeptide chain passes twice between these domains at the loop centered at residue Lys336 and at the linker helix Gln137-Ser145, which functions as the hinge axis between the domains. As a result, two clefts are formed between the domains. Within the upper cleft are the cofactors, an adenine nucleotide and a divalent metal ion, usually magnesium. It is thought that the cofactors interact with the domains on either side, increasing their connectivity. The lower cleft between domains 1 and 3 is lined by residues Tyr143, Ala144, Gly146, Thr148, Gly168, Ile341, Ile345, Leu346, Leu349, Thr351, and Met355, which are predominantly hydrophobic. This cleft constitutes the major binding site for most ABPs, and is thus called the targetbinding or hydrophobic cleft. (Actin Structure and Function). Most of the interaction that occur in the subunit are electrostatic in character but there are also hydrophobic interactions.  (Actin Structure and Function)&lt;br /&gt;
Under physiologic conditions, G-actin is transformed to F-actin by ATP. After G-actin is bound to an ATP molecule it can then bind to another ATP bound monomer to form an unstable dimer. It can then add a third ATP bound monomer to create a stable trimer that serves as a basis for building fibrous actin (F-actin). Once the F-actin is formed the ATP can be hydrolyzed, keeping the bound ADP and releasing an inorganic phosphate. The polymer can undergo a process known as treadmilling. This is where the polymer continuously grows at its positive end but disassembles at its negative end. This process requires a permanent source of energy such as ATP (Walter F., PhD. Boron (2003) Medical Physiology: A Cellular And Molecular Approaoch Elsevier/Saunders, pp. 1,300 ISBN:1-4160-2328-3. Page 28) &lt;br /&gt;
Unlike G-actin, F-actin does not form crystalline arrays that can be analyzed by X-ray crystallography. Instead it can be found by using fiber diffraction, electron-microscopy data and mathematical models. The structure can then be refined and remodeled as necessary. (ACTIN: General Principles from Studies in Yeast) The first high-resolution structural model of the actin filament was at a resolution of 8 A ˚ and was proposed by Holmes et al., 1990. Recently, an improved high-resolution F-actin model was created by Oda et al., 2009 with a resolution of 3.3 A ˚ in the radial and 5.6 A ˚ in the equatorial directions. &lt;br /&gt;
Vertebrates express three main actin isoforms, including three α-isoforms of skeletal, cardiac, and smooth muscles and the β- and γ- isoforms expressed in nonmuscle and muscle cells. Actin isoforms are different in a few of its amino acids, with most variations occurring toward the N terminus. Actin also undergoes various forms of posttranslational modifications. For instance, His73 of skeletal muscle α-actin is methylated, the N-terminal methionine and cysteine residues are acetylated and cleaved, and the resulting N-terminal aspartic acid is then re-acetylated. Since the original determination of the crystal structure of G-actin, over 80 structures of actin have been reported.  The majority of these structures have been obtained as complexes with actin-binding proteins (ABPs). (Actin Structure and Function)&lt;br /&gt;
&lt;br /&gt;
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&#039;&#039;&#039;&#039;&#039;Mechanism of Action&#039;&#039;&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
Polymerization mechanism&lt;br /&gt;
At increased ionic strength, G-actin molecules polymerize into filaments, known as F-actin. F-actin is the main component of the thin filaments in sarcomeres of muscle cells. Muscle sarcomeres use ATP hydrolysis to produce conrtractions by sliding the thin actin filament&lt;br /&gt;
past thick myosin filaments. The entire process is initiated by the slow formation of actin dimmers and trimers. These serve as a base for filament elongation. During elongation more actin monomers associate to than dissociate from either of the two ends, which results in the net growth of both filament ends. The steady-state phase is characterised by a dynamic equilibrium where the length of the actin filaments remains constant. This means while monomers are associating, other monomers are dissociating from the ends. In this dynamic equilibrium a stationery population of free actin monomers is established and is called the critical concentration. The polarity of the ends of the actin filaments play a key role in elongation. The ends of the filament are referred to as &amp;quot;barbed&amp;quot; and &amp;quot;pointed&amp;quot; according to the polarity of the arrowhead-like structure generated on binding with myosin subfragment 1. ) (Structure and Function of Actin by Wolfgang Kabsch) The barbed or plus end binds actin monomers faster than the pointed or minus end. Although its ATPase activity is not crucial for actin polymerisation, actin self-assembly is associated with the ATPase cycle, which powers this treadmilling process (Conformational Dynamics of Actin: Effectors and Implications for Biological Function) After the actin molecule is changed into a filament, the bound ATP is hydrolysed to ADP and inorganic phosphate is realeased. (Structure and Function of Actin by Wolfgang Kabsch) The formation of the F-actin is what stimulates the actin ATPase. The release of the  inorganic phosphate happens more slowly than the formation of the filament so that the growing filament has a cap of ATPactin at its barbed end, while monomers containing ADP and inorganic phosphate accumulate in the rest of the filament. &lt;br /&gt;
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The mature filament contains only ADP-actin. The tendency of actin to polymerize depends upon the affinity of actin monomers for filament ends. There is an actin monomer concentration below which actin will not polymerize known as the Critical Concentration (CC). At monomer concentrations above the CC, the actin will polymerize until the free monomer concentration is equal to the CC. (http://www.ncbi.nlm.nih.gov/books/NBK28299/) It is thought that the strong binding to the ATP is due to the amide proton of a serine 14 amino acid forming hydrogen bonds with the phosphate of ATP, thus stabilizing the nucleotide protein complex. (ACTIN: General Principles from Studies in Yeast). Pure actin can be switched between these states in the test-tube by altering the salt concentration. Actin in low salt conditions is in the G-state, while adding salts causes the actin to polymerise.   (http://www.bms.ed.ac.uk/research/others/smaciver/lectures/Cs1.htm Because actin polymerization is reversible, filaments can depolymerize by the dissociation of actin subunits, allowing actin filaments to be broken down when necessary. Therefore an apparent equilibrium exists between actin monomers and filaments, which is dependent on the concentration of free monomers. At this critical concentration, monomers and filaments are in apparent equilibrium.(Structure and Organization of Actin Filament)&lt;br /&gt;
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&#039;&#039;&#039;&#039;&#039;Function&#039;&#039;&#039;&#039;&#039;&lt;br /&gt;
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Studies of actin have shown that it has many functions within living cells. This range of functions is due to the diverse morphology of its structures and its interactions with actin-binding proteins (ABPs). (Conformational Dynamics of Actin: Effectors and Implications for Biological Function) The diversity in the functional ability of actin proteins is due in part to its interaction with actin-binding proteins. F-actin and G-actin interact with a wide array of proteins. There are over 150 known actin binding proteins (ABPs), which makes up 25% of cellular protein.  (http://www.cytoskeleton.com/actin?gclid=CNyRpoPC3a8CFeUEQAodTFkoCg) Actin has proved to be an important component in the cytoskeleton. The actin cytoskeleton is known as the microfilament and has a multi-purpose role in important cell processes such as maintaining cellular polarity, cell shape, cell motility, adhesion, cytokinesis and endocytosis. (Conformational Dynamics of Actin: Effectors and Implications for Biological Function)  Myosin molecules are a class of actin motors that aid in creating movement by “walking” across actin filaments and contracting muscle tissues. Microfilaments, also known as thin filaments are helical polymers composed of globular actin (G-actin). The polymers are polar and bind to nucleotides such as ATP in order to hydrolyze them. (Walter F., PhD. Boron (2003) Medical Physiology: A Cellular And Molecular Approaoch Elsevier/Saunders, pp. 1,300 ISBN:1-4160-2328-3. Page 28) Actin has no important enzymatic activity, however, it inhibits DNase I and activates the myosin ATPase. Actin filaments activate the Mg2+ ATPase activity and the movement of myosin along actin filaments produces the force for muscle contraction and other cell movements. Motility mechanisms which involve actin are controlled by the interaction in the G or F form with the various ABPs. (Structure and Function of Actin by Wolfgang Kabsch) &lt;br /&gt;
The mechanism is controlled by Ca2+ stimulated myosin light chain kinase. MLCK regulates the coming together of myosin and actin filaments and controls the force with which they contract. Actin-myosin filament networks are found in cells such as neurons and epithelial cells that don’t require movement. These networks provide neurons the ability to stretch cell processes long distances. (Walter F., PhD. Boron (2003) Medical Physiology: A Cellular And Molecular Approaoch Elsevier/Saunders, pp. 1,300 ISBN:1-4160-2328-3. Page 28) In higher order eukaryotic cells, actin filaments and myosin II filaments often come together to perform a function and then disassemble. For example in cytokineses, actin and myosin II filaments organize to form a contractile ring. The ring exists beneath the plasma membrane and during the M-phase of cell division, the ring contracts, pulling the plasma membrane inward and constricts the middle of the cell, leading to an eventual separation into two daughter cells. http://www.ncbi.nlm.nih.gov/books/NBK28299/)  &lt;br /&gt;
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&#039;&#039;&#039;&#039;&#039;Medical Implications&#039;&#039;&#039;&#039;&#039;&lt;br /&gt;
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Many of the functions of the cytoskeleton involve cytoskeleton and plasma membrane interactions. Proteins that exist between the two help to control cell shape, define the membrane domains and regulate cell/cell interactions and adhesion. There are at least 15 major protein species involved in the membrane-cytoskeleton of the human red blood cell. A mutation in any of these proteins can lead to cell fragility and cell death. Homologs of the erythrocyte membrane-skeleton can be found in many other cell types, which suggests the significance of these proteins. One of particular importance is the actin associated protein dystrophin. Dystrophin is an important part of the sarcolemmal membrane where it links the membrane to the sides of the actin filament bundles. Mutations in this protein leads to muscular dystrophies such as Duchenne’s disease or Becker muscular dystrophy. A homolog of dystrophin called utropin is thought to play a similar role in non-muscle cells.(http://www.cytoskeleton.com/actin?gclid=CNyRpoPC3a8CFeUEQAodTFkoCg)&lt;br /&gt;
  The genome of many mammals, including humans contains six actin genes, ACTA1, ACTA2, ACTB, ACTC, ACTG1 and ACTG2. Four of these are differentially expressed in cardiac (ACTC), smooth (ACTA2) enteric (ACTG2) and skeletal muscles (ACTA1); two are described as cytoplasmic actin genes (ACTB and ACTG1) and are expressed in all cells.  (Actin-Binding Proteins and Disease ) Actin mutations were not really known until the last 6-10 years. Mutations that have been found to cause human diseases have been found in the ACTC cardiac muscle gene which can cause dilated or hypertrophic cardiomyopathies including congenital fiber-type disproportion (CFTDP). Recently, mutations in ACTG1 have been associated with autosomal dominant deafness. Majority of actin disease mutations have been found to be dominant mutations. This has been the case for actin mutations is the Drosophila flight muscle-specific actin gene ACT88F. Scientists believe the common dominance of actin mutations is because the major functions of actin occur when it is in its F-form, associated with other proteins. The dominant actin mutations that lead to disease are mostly missense mutations. Actin mutations have been found in a variety of species such as yeast, nematodes and flies whose genomes are more accessible to mutagenesis. It is thought that there are three reasons why actin mutations are likely to be at very low frequencies in human populations: 1. actin is a ubiquitously expressed protein, 2. it is a highly conserved protein with many binding partners, so mutations in a large fraction of actin residues appear to cause a severe phenotype in humans and other organisms and 3. most actin mutations are dominant and given the usually severe effects, are not passed on to offspring. Thus familial actin mutants are likely to be relatively mild dominant alleles or recessive. Severe dominant alleles are likely to be de novo mutations. In the case of cytoplasmic actin, five ACT1G disease-causing mutant alleles are known so far and no disease-causing ACTB alleles have yet been described.&lt;br /&gt;
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&#039;&#039;&#039;&#039;&#039;References&#039;&#039;&#039;&#039;&#039;&lt;br /&gt;
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{{reflist}}&lt;br /&gt;
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&amp;lt;ref&amp;gt;PMID: 18573073&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 8489492&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;Alberts, B., Johnson, A., Lewis, J., Raff, M., Roberts, K., &amp;amp; Walter, P. (2002). Molecular biology of the cell. (3 ed.). New York: Garland Science.&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 1388079&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 20672362&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 2673365&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 2395459&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 2395461&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 8970724 &amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 2395459&amp;lt;/ref&amp;gt; &lt;br /&gt;
&amp;lt;ref&amp;gt;Boron, W., &amp;amp; Boulpaep, E. (2008). Medical physiology. (2 ed., pp. 14-20). Saunders Elsevier. Retrieved from http://books.google.com/books/about/Medical_Physiology_E_Book.html?id=HlMJRw08ihgC&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;Remedios, C., &amp;amp; Chhabra, D. (2008). Actin-binding proteins and diseases. (8 ed., pp. 16-18). New York: Springer.&amp;lt;/ref&amp;gt;&lt;/div&gt;</summary>
		<author><name>Brittany Smith</name></author>
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		<updated>2012-05-02T14:42:17Z</updated>

		<summary type="html">&lt;p&gt;Brittany Smith: &lt;/p&gt;
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&lt;div&gt;&amp;lt;Structure load=&#039;3hbt&#039; size=&#039;500&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;Globular actin (G-actin) in its native conformation&#039; scene=&#039;Insert optional scene name here&#039; /&amp;gt; &lt;br /&gt;
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== Introduction ==&lt;br /&gt;
Actin is a spherical 43 kilo-Dalton protein that is found in many cell types. It belongs to the class of proteins known as [http://en.wikipedia.org/wiki/Motor_proteins motor proteins]. Motor proteins function in the movement of substances across a substrate by utilizing [http://en.wikipedia.org/wiki/Adenosine_triphosphate ATP] as an energy source. It is one of the most highly conserved proteins differing by no more than 20% in species ranging from yeast to humans. (&amp;quot;Mediation, Modulation and Consequences of Membrane-Cytoskeleton Interactions&amp;quot;.) In an alignment of the 81 unique actin protein sequences, scientists found that 17.4% of positions in the consensus sequence are invariant in all actins, 35.6 % of positions are invariant or have a difference in only one of the 81 actins, and 40.4% of positions are invariant or have what are considered conservative changes (Review Article Molecular genetics of actin function)   &lt;br /&gt;
Actin is the monomeric subunit of microfilaments, one of the three key components of the [http://en.wikipedia.org/wiki/Cytoskeleton cytoskeleton] and thin filaments, which is part of the contractile unit in muscle cells. The cytoskeleton is a three-dimensional complex of filamentous protein that creates the shape and structure of cells, as well as fills in the gaps between organelles. This is what provides the cells with motility. There are three main proteins that make up the cytoskeleton. They are microfilaments, intermediate filaments and microtubules.  (http://www.bms.ed.ac.uk/research/others/smaciver/lectures/Cs1.htm&lt;br /&gt;
An Introduction to the Cytoskeleton. CS1) Actin exists in two forms, the monomeric, globular form (G-actin) and the polymeric, filamentous form (F-actin). (Conformational Dynamics of Actin: Effectors and Implications for Biological Function)In vertebrates there are three main groups of actin isoforms which include alpha, beta, and gamma. These isotypes (α, β and γ), show &amp;gt;90% amino-acid homology between isotypes and &amp;gt;98% homology within members of a particular isotypic group. (http://www.cytoskeleton.com/actin?gclid=CNyRpoPC3a8CFeUEQAodTFkoCg)  The alpha actins, found in muscle tissues, are a major constituent of the contractile apparatus. The beta and gamma actins coexist in most cell types as components of the cytoskeleton, and as mediators of internal cell motility.&lt;br /&gt;
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== History ==&lt;br /&gt;
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In 1942, [http://en.wikipedia.org/wiki/Brun%C3%B3_Ferenc_Straub Bruno Ferenc Straub] isolated actin as a water soluble component of muscle acetone powder. He found that at increased ionic strength the G-actin molecules would come together to form the F-actin filament. Actin was later found in non-muscle cells and its structure was seen through the use of [http://en.wikipedia.org/wiki/Immunofluorescence_microscopy immunofluorescence microscopy]. The next major accomplishment came with the discovery of the amino acid sequence. This allowed researchers to locate chemical and enzymatic alterations and to study how they affected the properties of the molecule. The high conservation of actin’s structure throughout various species was discovered through [http://en.wikipedia.org/wiki/Immunofluorescence_microscopy comparative sequence analysis]. In 1950, Straub reported that actin contained bound ATP and that during the polymerization of the monomers into microfilaments, the ATP was hydrolyzed to ADP and inorganic phosphate. (Straub FB, Feuer G (1989). &amp;quot;Adenosinetriphosphate. The functional group of actin. 1950&amp;quot;. Biochim. Biophys. Acta 1000: 180–95.PMID 2673365.) His discovery led to his suggestion that ATP-bound actin transforming into ADP-bound actin was what created muscle contractions. In the early 1980’s the principles of actin polymerization were exposed and the first actin-binding proteins (ABPs) were characterized according to their in vivo and in vitro functions. In 1990, the crystal structure of G-actin was solved by Kabsch. (Kabsch W, Mannherz HG, Suck D, Pai EF, Holmes KC (September 1990). &amp;quot;Atomic structure of the actin:DNase I complex&amp;quot;. Nature 347 (6288): 37–44. doi:10.1038/347037a0. PMID 2395459.) In this same year a model of F-actin was suggested by Holmes et al. The model was created by fitting a helix of G-actin structures according to low-resolution fiber diffraction data from the F-actin. ( Holmes KC, Popp D, Gebhard W, Kabsch W (September 1990). &amp;quot;Atomic model of the actin filament&amp;quot;. Nature 347 (6288): 44–9.doi:10.1038/347044a0. PMID 2395461.) Further advances in cryoelectron microscopy allowed scientists to find the binding sites for myosin and tropomyosin. A combination of [http://en.wikipedia.org/wiki/X-ray_crystallography X-ray crystallography] with fiber diffraction led to an atomic model of F-actin. (Structure and Function of Actin by Wolfgang Kabsch) After some debate actin also became generally accepted as an important structural and functional component of the cell nucleus (Conformational Dynamics of Actin: Effectors and Implications for Biological Function) Since this pioneering work by Straub, interest in actin has increased tremendously and so has the realization of how complex its structure is.&lt;br /&gt;
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&#039;&#039;&#039;&#039;&#039;Structure&#039;&#039;&#039;&#039;&#039;&lt;br /&gt;
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[[Image:Actin Image.gif]]&lt;br /&gt;
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Actin exists in both its monomeric (globular, G-actin) and polymeric (filamentous or F-actin) form. The actin monomer is approximately pear shaped. Actin is composed of 376 residues that are folded into two large domains, each comprised of two subdomains. Its secondary structure is 41% helical (22 helices; 153 residues) and 20% beta sheet (20 strands; 77 residues). (PDB) The actin filament is a double-stranded, right-handed helix with a half-pitch of 37 nm and a one-start left-handed genetic helix with a rise of 2.75 nm per monomer. The width of the filament is within the range of 7–10 nm. (Conformational Dynamics of Actin: Effectors and Implications for Biological Function) The large domains are organized to form a hinged molecule with a deep cleft. Subdomains 1 and 3 are structurally related, whereas subdomains 2 and 4 can be viewed as large insertions into subdomains 1 and 3, respectively. There is moderately little contact between the two major domains of actin; the polypeptide chain passes twice between these domains at the loop centered at residue Lys336 and at the linker helix Gln137-Ser145, which functions as the hinge axis between the domains. As a result, two clefts are formed between the domains. Within the upper cleft are the cofactors, an adenine nucleotide and a divalent metal ion, usually magnesium. It is thought that the cofactors interact with the domains on either side, increasing their connectivity. The lower cleft between domains 1 and 3 is lined by residues Tyr143, Ala144, Gly146, Thr148, Gly168, Ile341, Ile345, Leu346, Leu349, Thr351, and Met355, which are predominantly hydrophobic. This cleft constitutes the major binding site for most ABPs, and is thus called the targetbinding or hydrophobic cleft. (Actin Structure and Function). Most of the interaction that occur in the subunit are electrostatic in character but there are also hydrophobic interactions.  (Actin Structure and Function)&lt;br /&gt;
Under physiologic conditions, G-actin is transformed to F-actin by ATP. After G-actin is bound to an ATP molecule it can then bind to another ATP bound monomer to form an unstable dimer. It can then add a third ATP bound monomer to create a stable trimer that serves as a basis for building fibrous actin (F-actin). Once the F-actin is formed the ATP can be hydrolyzed, keeping the bound ADP and releasing an inorganic phosphate. The polymer can undergo a process known as treadmilling. This is where the polymer continuously grows at its positive end but disassembles at its negative end. This process requires a permanent source of energy such as ATP (Walter F., PhD. Boron (2003) Medical Physiology: A Cellular And Molecular Approaoch Elsevier/Saunders, pp. 1,300 ISBN:1-4160-2328-3. Page 28) &lt;br /&gt;
Unlike G-actin, F-actin does not form crystalline arrays that can be analyzed by X-ray crystallography. Instead it can be found by using fiber diffraction, electron-microscopy data and mathematical models. The structure can then be refined and remodeled as necessary. (ACTIN: General Principles from Studies in Yeast) The first high-resolution structural model of the actin filament was at a resolution of 8 A ˚ and was proposed by Holmes et al., 1990. Recently, an improved high-resolution F-actin model was created by Oda et al., 2009 with a resolution of 3.3 A ˚ in the radial and 5.6 A ˚ in the equatorial directions. &lt;br /&gt;
Vertebrates express three main actin isoforms, including three α-isoforms of skeletal, cardiac, and smooth muscles and the β- and γ- isoforms expressed in nonmuscle and muscle cells. Actin isoforms are different in a few of its amino acids, with most variations occurring toward the N terminus. Actin also undergoes various forms of posttranslational modifications. For instance, His73 of skeletal muscle α-actin is methylated, the N-terminal methionine and cysteine residues are acetylated and cleaved, and the resulting N-terminal aspartic acid is then re-acetylated. Since the original determination of the crystal structure of G-actin, over 80 structures of actin have been reported.  The majority of these structures have been obtained as complexes with actin-binding proteins (ABPs). (Actin Structure and Function)&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;&#039;&#039;Mechanism of Action&#039;&#039;&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
Polymerization mechanism&lt;br /&gt;
At increased ionic strength, G-actin molecules polymerize into filaments, known as F-actin. F-actin is the main component of the thin filaments in sarcomeres of muscle cells. Muscle sarcomeres use ATP hydrolysis to produce conrtractions by sliding the thin actin filament&lt;br /&gt;
past thick myosin filaments. The entire process is initiated by the slow formation of actin dimmers and trimers. These serve as a base for filament elongation. During elongation more actin monomers associate to than dissociate from either of the two ends, which results in the net growth of both filament ends. The steady-state phase is characterised by a dynamic equilibrium where the length of the actin filaments remains constant. This means while monomers are associating, other monomers are dissociating from the ends. In this dynamic equilibrium a stationery population of free actin monomers is established and is called the critical concentration. The polarity of the ends of the actin filaments play a key role in elongation. The ends of the filament are referred to as &amp;quot;barbed&amp;quot; and &amp;quot;pointed&amp;quot; according to the polarity of the arrowhead-like structure generated on binding with myosin subfragment 1. ) (Structure and Function of Actin by Wolfgang Kabsch) The barbed or plus end binds actin monomers faster than the pointed or minus end. Although its ATPase activity is not crucial for actin polymerisation, actin self-assembly is associated with the ATPase cycle, which powers this treadmilling process (Conformational Dynamics of Actin: Effectors and Implications for Biological Function) After the actin molecule is changed into a filament, the bound ATP is hydrolysed to ADP and inorganic phosphate is realeased. (Structure and Function of Actin by Wolfgang Kabsch) The formation of the F-actin is what stimulates the actin ATPase. The release of the  inorganic phosphate happens more slowly than the formation of the filament so that the growing filament has a cap of ATPactin at its barbed end, while monomers containing ADP and inorganic phosphate accumulate in the rest of the filament. &lt;br /&gt;
[[Image:Filament_formation.png]] [[Image:Treadmilling.gif]]&lt;br /&gt;
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The mature filament contains only ADP-actin. The tendency of actin to polymerize depends upon the affinity of actin monomers for filament ends. There is an actin monomer concentration below which actin will not polymerize known as the Critical Concentration (CC). At monomer concentrations above the CC, the actin will polymerize until the free monomer concentration is equal to the CC. (http://www.ncbi.nlm.nih.gov/books/NBK28299/) It is thought that the strong binding to the ATP is due to the amide proton of a serine 14 amino acid forming hydrogen bonds with the phosphate of ATP, thus stabilizing the nucleotide protein complex. (ACTIN: General Principles from Studies in Yeast). Pure actin can be switched between these states in the test-tube by altering the salt concentration. Actin in low salt conditions is in the G-state, while adding salts causes the actin to polymerise.   (http://www.bms.ed.ac.uk/research/others/smaciver/lectures/Cs1.htm Because actin polymerization is reversible, filaments can depolymerize by the dissociation of actin subunits, allowing actin filaments to be broken down when necessary. Therefore an apparent equilibrium exists between actin monomers and filaments, which is dependent on the concentration of free monomers. At this critical concentration, monomers and filaments are in apparent equilibrium.(Structure and Organization of Actin Filament)&lt;br /&gt;
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&#039;&#039;&#039;&#039;&#039;Function&#039;&#039;&#039;&#039;&#039;&lt;br /&gt;
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Studies of actin have shown that it has many functions within living cells. This range of functions is due to the diverse morphology of its structures and its interactions with actin-binding proteins (ABPs). (Conformational Dynamics of Actin: Effectors and Implications for Biological Function) The diversity in the functional ability of actin proteins is due in part to its interaction with actin-binding proteins. F-actin and G-actin interact with a wide array of proteins. There are over 150 known actin binding proteins (ABPs), which makes up 25% of cellular protein.  (http://www.cytoskeleton.com/actin?gclid=CNyRpoPC3a8CFeUEQAodTFkoCg) Actin has proved to be an important component in the cytoskeleton. The actin cytoskeleton is known as the microfilament and has a multi-purpose role in important cell processes such as maintaining cellular polarity, cell shape, cell motility, adhesion, cytokinesis and endocytosis. (Conformational Dynamics of Actin: Effectors and Implications for Biological Function)  Myosin molecules are a class of actin motors that aid in creating movement by “walking” across actin filaments and contracting muscle tissues. Microfilaments, also known as thin filaments are helical polymers composed of globular actin (G-actin). The polymers are polar and bind to nucleotides such as ATP in order to hydrolyze them. (Walter F., PhD. Boron (2003) Medical Physiology: A Cellular And Molecular Approaoch Elsevier/Saunders, pp. 1,300 ISBN:1-4160-2328-3. Page 28) Actin has no important enzymatic activity, however, it inhibits DNase I and activates the myosin ATPase. Actin filaments activate the Mg2+ ATPase activity and the movement of myosin along actin filaments produces the force for muscle contraction and other cell movements. Motility mechanisms which involve actin are controlled by the interaction in the G or F form with the various ABPs. (Structure and Function of Actin by Wolfgang Kabsch) &lt;br /&gt;
The mechanism is controlled by Ca2+ stimulated myosin light chain kinase. MLCK regulates the coming together of myosin and actin filaments and controls the force with which they contract. Actin-myosin filament networks are found in cells such as neurons and epithelial cells that don’t require movement. These networks provide neurons the ability to stretch cell processes long distances. (Walter F., PhD. Boron (2003) Medical Physiology: A Cellular And Molecular Approaoch Elsevier/Saunders, pp. 1,300 ISBN:1-4160-2328-3. Page 28) In higher order eukaryotic cells, actin filaments and myosin II filaments often come together to perform a function and then disassemble. For example in cytokineses, actin and myosin II filaments organize to form a contractile ring. The ring exists beneath the plasma membrane and during the M-phase of cell division, the ring contracts, pulling the plasma membrane inward and constricts the middle of the cell, leading to an eventual separation into two daughter cells. http://www.ncbi.nlm.nih.gov/books/NBK28299/)  &lt;br /&gt;
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&#039;&#039;&#039;&#039;&#039;Medical Implications&#039;&#039;&#039;&#039;&#039;&lt;br /&gt;
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Many of the functions of the cytoskeleton involve cytoskeleton and plasma membrane interactions. Proteins that exist between the two help to control cell shape, define the membrane domains and regulate cell/cell interactions and adhesion. There are at least 15 major protein species involved in the membrane-cytoskeleton of the human red blood cell. A mutation in any of these proteins can lead to cell fragility and cell death. Homologs of the erythrocyte membrane-skeleton can be found in many other cell types, which suggests the significance of these proteins. One of particular importance is the actin associated protein dystrophin. Dystrophin is an important part of the sarcolemmal membrane where it links the membrane to the sides of the actin filament bundles. Mutations in this protein leads to muscular dystrophies such as Duchenne’s disease or Becker muscular dystrophy. A homolog of dystrophin called utropin is thought to play a similar role in non-muscle cells.(http://www.cytoskeleton.com/actin?gclid=CNyRpoPC3a8CFeUEQAodTFkoCg)&lt;br /&gt;
  The genome of many mammals, including humans contains six actin genes, ACTA1, ACTA2, ACTB, ACTC, ACTG1 and ACTG2. Four of these are differentially expressed in cardiac (ACTC), smooth (ACTA2) enteric (ACTG2) and skeletal muscles (ACTA1); two are described as cytoplasmic actin genes (ACTB and ACTG1) and are expressed in all cells.  (Actin-Binding Proteins and Disease ) Actin mutations were not really known until the last 6-10 years. Mutations that have been found to cause human diseases have been found in the ACTC cardiac muscle gene which can cause dilated or hypertrophic cardiomyopathies including congenital fiber-type disproportion (CFTDP). Recently, mutations in ACTG1 have been associated with autosomal dominant deafness. Majority of actin disease mutations have been found to be dominant mutations. This has been the case for actin mutations is the Drosophila flight muscle-specific actin gene ACT88F. Scientists believe the common dominance of actin mutations is because the major functions of actin occur when it is in its F-form, associated with other proteins. The dominant actin mutations that lead to disease are mostly missense mutations. Actin mutations have been found in a variety of species such as yeast, nematodes and flies whose genomes are more accessible to mutagenesis. It is thought that there are three reasons why actin mutations are likely to be at very low frequencies in human populations: 1. actin is a ubiquitously expressed protein, 2. it is a highly conserved protein with many binding partners, so mutations in a large fraction of actin residues appear to cause a severe phenotype in humans and other organisms and 3. most actin mutations are dominant and given the usually severe effects, are not passed on to offspring. Thus familial actin mutants are likely to be relatively mild dominant alleles or recessive. Severe dominant alleles are likely to be de novo mutations. In the case of cytoplasmic actin, five ACT1G disease-causing mutant alleles are known so far and no disease-causing ACTB alleles have yet been described.&lt;br /&gt;
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&#039;&#039;&#039;&#039;&#039;References&#039;&#039;&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
{{reflist}}&lt;br /&gt;
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&amp;lt;ref&amp;gt;PMID: 18573073&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 8489492&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;Alberts, B., Johnson, A., Lewis, J., Raff, M., Roberts, K., &amp;amp; Walter, P. (2002). Molecular biology of the cell. (3 ed.). New York: Garland Science.&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 1388079&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 20672362&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 2673365&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 2395459&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 2395461&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 8970724 &amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 2395459&amp;lt;/ref&amp;gt; &lt;br /&gt;
&amp;lt;ref&amp;gt;Boron, W., &amp;amp; Boulpaep, E. (2008). Medical physiology. (2 ed., pp. 14-20). Saunders Elsevier. Retrieved from http://books.google.com/books/about/Medical_Physiology_E_Book.html?id=HlMJRw08ihgC&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;Remedios, C., &amp;amp; Chhabra, D. (2008). Actin-binding proteins and diseases. (8 ed., pp. 16-18). New York: Springer.&amp;lt;/ref&amp;gt;&lt;/div&gt;</summary>
		<author><name>Brittany Smith</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_471&amp;diff=1384372</id>
		<title>Sandbox Reserved 471</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_471&amp;diff=1384372"/>
		<updated>2012-05-02T14:36:15Z</updated>

		<summary type="html">&lt;p&gt;Brittany Smith: &lt;/p&gt;
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&lt;div&gt;&amp;lt;Structure load=&#039;3hbt&#039; size=&#039;500&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;Globular actin (G-actin) in its native conformation&#039; scene=&#039;Insert optional scene name here&#039; /&amp;gt; &lt;br /&gt;
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{{Sandbox_Reserved_Robert_B_Rose_1}}&lt;br /&gt;
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&#039;&#039;&#039;&#039;&#039;Introduction &#039;&#039;&#039;&#039;&#039;&lt;br /&gt;
Actin is a spherical 43 kilo-Dalton protein that is found in many cell types. It belongs to the class of proteins known as [http://en.wikipedia.org/wiki/Motor_proteins motor proteins]. Motor proteins function in the movement of substances across a substrate by utilizing [http://en.wikipedia.org/wiki/Adenosine_triphosphate ATP] as an energy source. It is one of the most highly conserved proteins differing by no more than 20% in species ranging from yeast to humans. (&amp;quot;Mediation, Modulation and Consequences of Membrane-Cytoskeleton Interactions&amp;quot;.) In an alignment of the 81 unique actin protein sequences, scientists found that 17.4% of positions in the consensus sequence are invariant in all actins, 35.6 % of positions are invariant or have a difference in only one of the 81 actins, and 40.4% of positions are invariant or have what are considered conservative changes (Review Article Molecular genetics of actin function)   &lt;br /&gt;
Actin is the monomeric subunit of microfilaments, one of the three key components of the [http://en.wikipedia.org/wiki/Cytoskeleton cytoskeleton] and thin filaments, which is part of the contractile unit in muscle cells. The cytoskeleton is a three-dimensional complex of filamentous protein that creates the shape and structure of cells, as well as fills in the gaps between organelles. This is what provides the cells with motility. There are three main proteins that make up the cytoskeleton. They are microfilaments, intermediate filaments and microtubules.  (http://www.bms.ed.ac.uk/research/others/smaciver/lectures/Cs1.htm&lt;br /&gt;
An Introduction to the Cytoskeleton. CS1) Actin exists in two forms, the monomeric, globular form (G-actin) and the polymeric, filamentous form (F-actin). (Conformational Dynamics of Actin: Effectors and Implications for Biological Function)In vertebrates there are three main groups of actin isoforms which include alpha, beta, and gamma. These isotypes (α, β and γ), show &amp;gt;90% amino-acid homology between isotypes and &amp;gt;98% homology within members of a particular isotypic group. (http://www.cytoskeleton.com/actin?gclid=CNyRpoPC3a8CFeUEQAodTFkoCg)  The alpha actins, found in muscle tissues, are a major constituent of the contractile apparatus. The beta and gamma actins coexist in most cell types as components of the cytoskeleton, and as mediators of internal cell motility.&lt;br /&gt;
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&#039;&#039;&#039;&#039;&#039;History&#039;&#039;&#039;&#039;&#039;&lt;br /&gt;
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In 1942, [http://en.wikipedia.org/wiki/Brun%C3%B3_Ferenc_Straub Bruno Ferenc Straub] isolated actin as a water soluble component of muscle acetone powder. He found that at increased ionic strength the G-actin molecules would come together to form the F-actin filament. Actin was later found in non-muscle cells and its structure was seen through the use of [http://en.wikipedia.org/wiki/Immunofluorescence_microscopy immunofluorescence microscopy]. The next major accomplishment came with the discovery of the amino acid sequence. This allowed researchers to locate chemical and enzymatic alterations and to study how they affected the properties of the molecule. The high conservation of actin’s structure throughout various species was discovered through [http://en.wikipedia.org/wiki/Immunofluorescence_microscopy comparative sequence analysis]. In 1950, Straub reported that actin contained bound ATP and that during the polymerization of the monomers into microfilaments, the ATP was hydrolyzed to ADP and inorganic phosphate. (Straub FB, Feuer G (1989). &amp;quot;Adenosinetriphosphate. The functional group of actin. 1950&amp;quot;. Biochim. Biophys. Acta 1000: 180–95.PMID 2673365.) His discovery led to his suggestion that ATP-bound actin transforming into ADP-bound actin was what created muscle contractions. In the early 1980’s the principles of actin polymerization were exposed and the first actin-binding proteins (ABPs) were characterized according to their in vivo and in vitro functions. In 1990, the crystal structure of G-actin was solved by Kabsch. (Kabsch W, Mannherz HG, Suck D, Pai EF, Holmes KC (September 1990). &amp;quot;Atomic structure of the actin:DNase I complex&amp;quot;. Nature 347 (6288): 37–44. doi:10.1038/347037a0. PMID 2395459.) In this same year a model of F-actin was suggested by Holmes et al. The model was created by fitting a helix of G-actin structures according to low-resolution fiber diffraction data from the F-actin. ( Holmes KC, Popp D, Gebhard W, Kabsch W (September 1990). &amp;quot;Atomic model of the actin filament&amp;quot;. Nature 347 (6288): 44–9.doi:10.1038/347044a0. PMID 2395461.) Further advances in cryoelectron microscopy allowed scientists to find the binding sites for myosin and tropomyosin. A combination of [http://en.wikipedia.org/wiki/X-ray_crystallography X-ray crystallography] with fiber diffraction led to an atomic model of F-actin. (Structure and Function of Actin by Wolfgang Kabsch) After some debate actin also became generally accepted as an important structural and functional component of the cell nucleus (Conformational Dynamics of Actin: Effectors and Implications for Biological Function) Since this pioneering work by Straub, interest in actin has increased tremendously and so has the realization of how complex its structure is.&lt;br /&gt;
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&#039;&#039;&#039;&#039;&#039;Structure&#039;&#039;&#039;&#039;&#039;&lt;br /&gt;
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[[Image:Actin Image.gif]]&lt;br /&gt;
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Actin exists in both its monomeric (globular, G-actin) and polymeric (filamentous or F-actin) form. The actin monomer is approximately pear shaped. Actin is composed of 376 residues that are folded into two large domains, each comprised of two subdomains. Its secondary structure is 41% helical (22 helices; 153 residues) and 20% beta sheet (20 strands; 77 residues). (PDB) The actin filament is a double-stranded, right-handed helix with a half-pitch of 37 nm and a one-start left-handed genetic helix with a rise of 2.75 nm per monomer. The width of the filament is within the range of 7–10 nm. (Conformational Dynamics of Actin: Effectors and Implications for Biological Function) The large domains are organized to form a hinged molecule with a deep cleft. Subdomains 1 and 3 are structurally related, whereas subdomains 2 and 4 can be viewed as large insertions into subdomains 1 and 3, respectively. There is moderately little contact between the two major domains of actin; the polypeptide chain passes twice between these domains at the loop centered at residue Lys336 and at the linker helix Gln137-Ser145, which functions as the hinge axis between the domains. As a result, two clefts are formed between the domains. Within the upper cleft are the cofactors, an adenine nucleotide and a divalent metal ion, usually magnesium. It is thought that the cofactors interact with the domains on either side, increasing their connectivity. The lower cleft between domains 1 and 3 is lined by residues Tyr143, Ala144, Gly146, Thr148, Gly168, Ile341, Ile345, Leu346, Leu349, Thr351, and Met355, which are predominantly hydrophobic. This cleft constitutes the major binding site for most ABPs, and is thus called the targetbinding or hydrophobic cleft. (Actin Structure and Function). Most of the interaction that occur in the subunit are electrostatic in character but there are also hydrophobic interactions.  (Actin Structure and Function)&lt;br /&gt;
Under physiologic conditions, G-actin is transformed to F-actin by ATP. After G-actin is bound to an ATP molecule it can then bind to another ATP bound monomer to form an unstable dimer. It can then add a third ATP bound monomer to create a stable trimer that serves as a basis for building fibrous actin (F-actin). Once the F-actin is formed the ATP can be hydrolyzed, keeping the bound ADP and releasing an inorganic phosphate. The polymer can undergo a process known as treadmilling. This is where the polymer continuously grows at its positive end but disassembles at its negative end. This process requires a permanent source of energy such as ATP (Walter F., PhD. Boron (2003) Medical Physiology: A Cellular And Molecular Approaoch Elsevier/Saunders, pp. 1,300 ISBN:1-4160-2328-3. Page 28) &lt;br /&gt;
Unlike G-actin, F-actin does not form crystalline arrays that can be analyzed by X-ray crystallography. Instead it can be found by using fiber diffraction, electron-microscopy data and mathematical models. The structure can then be refined and remodeled as necessary. (ACTIN: General Principles from Studies in Yeast) The first high-resolution structural model of the actin filament was at a resolution of 8 A ˚ and was proposed by Holmes et al., 1990. Recently, an improved high-resolution F-actin model was created by Oda et al., 2009 with a resolution of 3.3 A ˚ in the radial and 5.6 A ˚ in the equatorial directions. &lt;br /&gt;
Vertebrates express three main actin isoforms, including three α-isoforms of skeletal, cardiac, and smooth muscles and the β- and γ- isoforms expressed in nonmuscle and muscle cells. Actin isoforms are different in a few of its amino acids, with most variations occurring toward the N terminus. Actin also undergoes various forms of posttranslational modifications. For instance, His73 of skeletal muscle α-actin is methylated, the N-terminal methionine and cysteine residues are acetylated and cleaved, and the resulting N-terminal aspartic acid is then re-acetylated. Since the original determination of the crystal structure of G-actin, over 80 structures of actin have been reported.  The majority of these structures have been obtained as complexes with actin-binding proteins (ABPs). (Actin Structure and Function)&lt;br /&gt;
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&#039;&#039;&#039;&#039;&#039;Mechanism of Action&#039;&#039;&#039;&#039;&#039;&lt;br /&gt;
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Polymerization mechanism&lt;br /&gt;
At increased ionic strength, G-actin molecules polymerize into filaments, known as F-actin. F-actin is the main component of the thin filaments in sarcomeres of muscle cells. Muscle sarcomeres use ATP hydrolysis to produce conrtractions by sliding the thin actin filament&lt;br /&gt;
past thick myosin filaments. The entire process is initiated by the slow formation of actin dimmers and trimers. These serve as a base for filament elongation. During elongation more actin monomers associate to than dissociate from either of the two ends, which results in the net growth of both filament ends. The steady-state phase is characterised by a dynamic equilibrium where the length of the actin filaments remains constant. This means while monomers are associating, other monomers are dissociating from the ends. In this dynamic equilibrium a stationery population of free actin monomers is established and is called the critical concentration. The polarity of the ends of the actin filaments play a key role in elongation. The ends of the filament are referred to as &amp;quot;barbed&amp;quot; and &amp;quot;pointed&amp;quot; according to the polarity of the arrowhead-like structure generated on binding with myosin subfragment 1. ) (Structure and Function of Actin by Wolfgang Kabsch) The barbed or plus end binds actin monomers faster than the pointed or minus end. Although its ATPase activity is not crucial for actin polymerisation, actin self-assembly is associated with the ATPase cycle, which powers this treadmilling process (Conformational Dynamics of Actin: Effectors and Implications for Biological Function) After the actin molecule is changed into a filament, the bound ATP is hydrolysed to ADP and inorganic phosphate is realeased. (Structure and Function of Actin by Wolfgang Kabsch) The formation of the F-actin is what stimulates the actin ATPase. The release of the  inorganic phosphate happens more slowly than the formation of the filament so that the growing filament has a cap of ATPactin at its barbed end, while monomers containing ADP and inorganic phosphate accumulate in the rest of the filament. &lt;br /&gt;
[[Image:Filament_formation.png]] [[Image:Treadmilling.gif]]&lt;br /&gt;
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The mature filament contains only ADP-actin. The tendency of actin to polymerize depends upon the affinity of actin monomers for filament ends. There is an actin monomer concentration below which actin will not polymerize known as the Critical Concentration (CC). At monomer concentrations above the CC, the actin will polymerize until the free monomer concentration is equal to the CC. (http://www.ncbi.nlm.nih.gov/books/NBK28299/) It is thought that the strong binding to the ATP is due to the amide proton of a serine 14 amino acid forming hydrogen bonds with the phosphate of ATP, thus stabilizing the nucleotide protein complex. (ACTIN: General Principles from Studies in Yeast). Pure actin can be switched between these states in the test-tube by altering the salt concentration. Actin in low salt conditions is in the G-state, while adding salts causes the actin to polymerise.   (http://www.bms.ed.ac.uk/research/others/smaciver/lectures/Cs1.htm Because actin polymerization is reversible, filaments can depolymerize by the dissociation of actin subunits, allowing actin filaments to be broken down when necessary. Therefore an apparent equilibrium exists between actin monomers and filaments, which is dependent on the concentration of free monomers. At this critical concentration, monomers and filaments are in apparent equilibrium.(Structure and Organization of Actin Filament)&lt;br /&gt;
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&#039;&#039;&#039;&#039;&#039;Function&#039;&#039;&#039;&#039;&#039;&lt;br /&gt;
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Studies of actin have shown that it has many functions within living cells. This range of functions is due to the diverse morphology of its structures and its interactions with actin-binding proteins (ABPs). (Conformational Dynamics of Actin: Effectors and Implications for Biological Function) The diversity in the functional ability of actin proteins is due in part to its interaction with actin-binding proteins. F-actin and G-actin interact with a wide array of proteins. There are over 150 known actin binding proteins (ABPs), which makes up 25% of cellular protein.  (http://www.cytoskeleton.com/actin?gclid=CNyRpoPC3a8CFeUEQAodTFkoCg) Actin has proved to be an important component in the cytoskeleton. The actin cytoskeleton is known as the microfilament and has a multi-purpose role in important cell processes such as maintaining cellular polarity, cell shape, cell motility, adhesion, cytokinesis and endocytosis. (Conformational Dynamics of Actin: Effectors and Implications for Biological Function)  Myosin molecules are a class of actin motors that aid in creating movement by “walking” across actin filaments and contracting muscle tissues. Microfilaments, also known as thin filaments are helical polymers composed of globular actin (G-actin). The polymers are polar and bind to nucleotides such as ATP in order to hydrolyze them. (Walter F., PhD. Boron (2003) Medical Physiology: A Cellular And Molecular Approaoch Elsevier/Saunders, pp. 1,300 ISBN:1-4160-2328-3. Page 28) Actin has no important enzymatic activity, however, it inhibits DNase I and activates the myosin ATPase. Actin filaments activate the Mg2+ ATPase activity and the movement of myosin along actin filaments produces the force for muscle contraction and other cell movements. Motility mechanisms which involve actin are controlled by the interaction in the G or F form with the various ABPs. (Structure and Function of Actin by Wolfgang Kabsch) &lt;br /&gt;
The mechanism is controlled by Ca2+ stimulated myosin light chain kinase. MLCK regulates the coming together of myosin and actin filaments and controls the force with which they contract. Actin-myosin filament networks are found in cells such as neurons and epithelial cells that don’t require movement. These networks provide neurons the ability to stretch cell processes long distances. (Walter F., PhD. Boron (2003) Medical Physiology: A Cellular And Molecular Approaoch Elsevier/Saunders, pp. 1,300 ISBN:1-4160-2328-3. Page 28) In higher order eukaryotic cells, actin filaments and myosin II filaments often come together to perform a function and then disassemble. For example in cytokineses, actin and myosin II filaments organize to form a contractile ring. The ring exists beneath the plasma membrane and during the M-phase of cell division, the ring contracts, pulling the plasma membrane inward and constricts the middle of the cell, leading to an eventual separation into two daughter cells. http://www.ncbi.nlm.nih.gov/books/NBK28299/)  &lt;br /&gt;
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&#039;&#039;&#039;&#039;&#039;Medical Implications&#039;&#039;&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
Many of the functions of the cytoskeleton involve cytoskeleton and plasma membrane interactions. Proteins that exist between the two help to control cell shape, define the membrane domains and regulate cell/cell interactions and adhesion. There are at least 15 major protein species involved in the membrane-cytoskeleton of the human red blood cell. A mutation in any of these proteins can lead to cell fragility and cell death. Homologs of the erythrocyte membrane-skeleton can be found in many other cell types, which suggests the significance of these proteins. One of particular importance is the actin associated protein dystrophin. Dystrophin is an important part of the sarcolemmal membrane where it links the membrane to the sides of the actin filament bundles. Mutations in this protein leads to muscular dystrophies such as Duchenne’s disease or Becker muscular dystrophy. A homolog of dystrophin called utropin is thought to play a similar role in non-muscle cells.(http://www.cytoskeleton.com/actin?gclid=CNyRpoPC3a8CFeUEQAodTFkoCg)&lt;br /&gt;
  The genome of many mammals, including humans contains six actin genes, ACTA1, ACTA2, ACTB, ACTC, ACTG1 and ACTG2. Four of these are differentially expressed in cardiac (ACTC), smooth (ACTA2) enteric (ACTG2) and skeletal muscles (ACTA1); two are described as cytoplasmic actin genes (ACTB and ACTG1) and are expressed in all cells.  (Actin-Binding Proteins and Disease ) Actin mutations were not really known until the last 6-10 years. Mutations that have been found to cause human diseases have been found in the ACTC cardiac muscle gene which can cause dilated or hypertrophic cardiomyopathies including congenital fiber-type disproportion (CFTDP). Recently, mutations in ACTG1 have been associated with autosomal dominant deafness. Majority of actin disease mutations have been found to be dominant mutations. This has been the case for actin mutations is the Drosophila flight muscle-specific actin gene ACT88F. Scientists believe the common dominance of actin mutations is because the major functions of actin occur when it is in its F-form, associated with other proteins. The dominant actin mutations that lead to disease are mostly missense mutations. Actin mutations have been found in a variety of species such as yeast, nematodes and flies whose genomes are more accessible to mutagenesis. It is thought that there are three reasons why actin mutations are likely to be at very low frequencies in human populations: 1. actin is a ubiquitously expressed protein, 2. it is a highly conserved protein with many binding partners, so mutations in a large fraction of actin residues appear to cause a severe phenotype in humans and other organisms and 3. most actin mutations are dominant and given the usually severe effects, are not passed on to offspring. Thus familial actin mutants are likely to be relatively mild dominant alleles or recessive. Severe dominant alleles are likely to be de novo mutations. In the case of cytoplasmic actin, five ACT1G disease-causing mutant alleles are known so far and no disease-causing ACTB alleles have yet been described.&lt;br /&gt;
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&#039;&#039;&#039;&#039;&#039;References&#039;&#039;&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
{{reflist}}&lt;br /&gt;
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&amp;lt;ref&amp;gt;PMID: 18573073&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 8489492&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;Alberts, B., Johnson, A., Lewis, J., Raff, M., Roberts, K., &amp;amp; Walter, P. (2002). Molecular biology of the cell. (3 ed.). New York: Garland Science.&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 1388079&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 20672362&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 2673365&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 2395459&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 2395461&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 8970724 &amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 2395459&amp;lt;/ref&amp;gt; &lt;br /&gt;
&amp;lt;ref&amp;gt;Boron, W., &amp;amp; Boulpaep, E. (2008). Medical physiology. (2 ed., pp. 14-20). Saunders Elsevier. Retrieved from http://books.google.com/books/about/Medical_Physiology_E_Book.html?id=HlMJRw08ihgC&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;Remedios, C., &amp;amp; Chhabra, D. (2008). Actin-binding proteins and diseases. (8 ed., pp. 16-18). New York: Springer.&amp;lt;/ref&amp;gt;&lt;/div&gt;</summary>
		<author><name>Brittany Smith</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_471&amp;diff=1384370</id>
		<title>Sandbox Reserved 471</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_471&amp;diff=1384370"/>
		<updated>2012-05-02T14:34:29Z</updated>

		<summary type="html">&lt;p&gt;Brittany Smith: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;Structure load=&#039;3hbt&#039; size=&#039;500&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;Globular actin (G-actin) in its native conformation&#039; scene=&#039;Insert optional scene name here&#039; /&amp;gt; &lt;br /&gt;
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{{Sandbox_Reserved_Robert_B_Rose_1}}&lt;br /&gt;
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== Introduction ==&lt;br /&gt;
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Actin is a spherical 43 kilo-Dalton protein that is found in many cell types. It belongs to the class of proteins known as [http://en.wikipedia.org/wiki/Motor_proteins motor proteins]. Motor proteins function in the movement of substances across a substrate by utilizing [http://en.wikipedia.org/wiki/Adenosine_triphosphate ATP] as an energy source. It is one of the most highly conserved proteins differing by no more than 20% in species ranging from yeast to humans. (&amp;quot;Mediation, Modulation and Consequences of Membrane-Cytoskeleton Interactions&amp;quot;.) In an alignment of the 81 unique actin protein sequences, scientists found that 17.4% of positions in the consensus sequence are invariant in all actins, 35.6 % of positions are invariant or have a difference in only one of the 81 actins, and 40.4% of positions are invariant or have what are considered conservative changes (Review Article Molecular genetics of actin function)   &lt;br /&gt;
Actin is the monomeric subunit of microfilaments, one of the three key components of the [http://en.wikipedia.org/wiki/Cytoskeleton cytoskeleton] and thin filaments, which is part of the contractile unit in muscle cells. The cytoskeleton is a three-dimensional complex of filamentous protein that creates the shape and structure of cells, as well as fills in the gaps between organelles. This is what provides the cells with motility. There are three main proteins that make up the cytoskeleton. They are microfilaments, intermediate filaments and microtubules.  (http://www.bms.ed.ac.uk/research/others/smaciver/lectures/Cs1.htm&lt;br /&gt;
An Introduction to the Cytoskeleton. CS1) Actin exists in two forms, the monomeric, globular form (G-actin) and the polymeric, filamentous form (F-actin). (Conformational Dynamics of Actin: Effectors and Implications for Biological Function)In vertebrates there are three main groups of actin isoforms which include alpha, beta, and gamma. These isotypes (α, β and γ), show &amp;gt;90% amino-acid homology between isotypes and &amp;gt;98% homology within members of a particular isotypic group. (http://www.cytoskeleton.com/actin?gclid=CNyRpoPC3a8CFeUEQAodTFkoCg)  The alpha actins, found in muscle tissues, are a major constituent of the contractile apparatus. The beta and gamma actins coexist in most cell types as components of the cytoskeleton, and as mediators of internal cell motility.&lt;br /&gt;
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&#039;&#039;&#039;&#039;&#039;History&#039;&#039;&#039;&#039;&#039;&lt;br /&gt;
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In 1942, [http://en.wikipedia.org/wiki/Brun%C3%B3_Ferenc_Straub Bruno Ferenc Straub] isolated actin as a water soluble component of muscle acetone powder. He found that at increased ionic strength the G-actin molecules would come together to form the F-actin filament. Actin was later found in non-muscle cells and its structure was seen through the use of [http://en.wikipedia.org/wiki/Immunofluorescence_microscopy immunofluorescence microscopy]. The next major accomplishment came with the discovery of the amino acid sequence. This allowed researchers to locate chemical and enzymatic alterations and to study how they affected the properties of the molecule. The high conservation of actin’s structure throughout various species was discovered through [http://en.wikipedia.org/wiki/Immunofluorescence_microscopy comparative sequence analysis]. In 1950, Straub reported that actin contained bound ATP and that during the polymerization of the monomers into microfilaments, the ATP was hydrolyzed to ADP and inorganic phosphate. (Straub FB, Feuer G (1989). &amp;quot;Adenosinetriphosphate. The functional group of actin. 1950&amp;quot;. Biochim. Biophys. Acta 1000: 180–95.PMID 2673365.) His discovery led to his suggestion that ATP-bound actin transforming into ADP-bound actin was what created muscle contractions. In the early 1980’s the principles of actin polymerization were exposed and the first actin-binding proteins (ABPs) were characterized according to their in vivo and in vitro functions. In 1990, the crystal structure of G-actin was solved by Kabsch. (Kabsch W, Mannherz HG, Suck D, Pai EF, Holmes KC (September 1990). &amp;quot;Atomic structure of the actin:DNase I complex&amp;quot;. Nature 347 (6288): 37–44. doi:10.1038/347037a0. PMID 2395459.) In this same year a model of F-actin was suggested by Holmes et al. The model was created by fitting a helix of G-actin structures according to low-resolution fiber diffraction data from the F-actin. ( Holmes KC, Popp D, Gebhard W, Kabsch W (September 1990). &amp;quot;Atomic model of the actin filament&amp;quot;. Nature 347 (6288): 44–9.doi:10.1038/347044a0. PMID 2395461.) Further advances in cryoelectron microscopy allowed scientists to find the binding sites for myosin and tropomyosin. A combination of [http://en.wikipedia.org/wiki/X-ray_crystallography X-ray crystallography] with fiber diffraction led to an atomic model of F-actin. (Structure and Function of Actin by Wolfgang Kabsch) After some debate actin also became generally accepted as an important structural and functional component of the cell nucleus (Conformational Dynamics of Actin: Effectors and Implications for Biological Function) Since this pioneering work by Straub, interest in actin has increased tremendously and so has the realization of how complex its structure is.&lt;br /&gt;
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&#039;&#039;&#039;&#039;&#039;Structure&#039;&#039;&#039;&#039;&#039;&lt;br /&gt;
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[[Image:Actin Image.gif]]&lt;br /&gt;
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Actin exists in both its monomeric (globular, G-actin) and polymeric (filamentous or F-actin) form. The actin monomer is approximately pear shaped. Actin is composed of 376 residues that are folded into two large domains, each comprised of two subdomains. Its secondary structure is 41% helical (22 helices; 153 residues) and 20% beta sheet (20 strands; 77 residues). (PDB) The actin filament is a double-stranded, right-handed helix with a half-pitch of 37 nm and a one-start left-handed genetic helix with a rise of 2.75 nm per monomer. The width of the filament is within the range of 7–10 nm. (Conformational Dynamics of Actin: Effectors and Implications for Biological Function) The large domains are organized to form a hinged molecule with a deep cleft. Subdomains 1 and 3 are structurally related, whereas subdomains 2 and 4 can be viewed as large insertions into subdomains 1 and 3, respectively. There is moderately little contact between the two major domains of actin; the polypeptide chain passes twice between these domains at the loop centered at residue Lys336 and at the linker helix Gln137-Ser145, which functions as the hinge axis between the domains. As a result, two clefts are formed between the domains. Within the upper cleft are the cofactors, an adenine nucleotide and a divalent metal ion, usually magnesium. It is thought that the cofactors interact with the domains on either side, increasing their connectivity. The lower cleft between domains 1 and 3 is lined by residues Tyr143, Ala144, Gly146, Thr148, Gly168, Ile341, Ile345, Leu346, Leu349, Thr351, and Met355, which are predominantly hydrophobic. This cleft constitutes the major binding site for most ABPs, and is thus called the targetbinding or hydrophobic cleft. (Actin Structure and Function). Most of the interaction that occur in the subunit are electrostatic in character but there are also hydrophobic interactions.  (Actin Structure and Function)&lt;br /&gt;
Under physiologic conditions, G-actin is transformed to F-actin by ATP. After G-actin is bound to an ATP molecule it can then bind to another ATP bound monomer to form an unstable dimer. It can then add a third ATP bound monomer to create a stable trimer that serves as a basis for building fibrous actin (F-actin). Once the F-actin is formed the ATP can be hydrolyzed, keeping the bound ADP and releasing an inorganic phosphate. The polymer can undergo a process known as treadmilling. This is where the polymer continuously grows at its positive end but disassembles at its negative end. This process requires a permanent source of energy such as ATP (Walter F., PhD. Boron (2003) Medical Physiology: A Cellular And Molecular Approaoch Elsevier/Saunders, pp. 1,300 ISBN:1-4160-2328-3. Page 28) &lt;br /&gt;
Unlike G-actin, F-actin does not form crystalline arrays that can be analyzed by X-ray crystallography. Instead it can be found by using fiber diffraction, electron-microscopy data and mathematical models. The structure can then be refined and remodeled as necessary. (ACTIN: General Principles from Studies in Yeast) The first high-resolution structural model of the actin filament was at a resolution of 8 A ˚ and was proposed by Holmes et al., 1990. Recently, an improved high-resolution F-actin model was created by Oda et al., 2009 with a resolution of 3.3 A ˚ in the radial and 5.6 A ˚ in the equatorial directions. &lt;br /&gt;
Vertebrates express three main actin isoforms, including three α-isoforms of skeletal, cardiac, and smooth muscles and the β- and γ- isoforms expressed in nonmuscle and muscle cells. Actin isoforms are different in a few of its amino acids, with most variations occurring toward the N terminus. Actin also undergoes various forms of posttranslational modifications. For instance, His73 of skeletal muscle α-actin is methylated, the N-terminal methionine and cysteine residues are acetylated and cleaved, and the resulting N-terminal aspartic acid is then re-acetylated. Since the original determination of the crystal structure of G-actin, over 80 structures of actin have been reported.  The majority of these structures have been obtained as complexes with actin-binding proteins (ABPs). (Actin Structure and Function)&lt;br /&gt;
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&#039;&#039;&#039;&#039;&#039;Mechanism of Action&#039;&#039;&#039;&#039;&#039;&lt;br /&gt;
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Polymerization mechanism&lt;br /&gt;
At increased ionic strength, G-actin molecules polymerize into filaments, known as F-actin. F-actin is the main component of the thin filaments in sarcomeres of muscle cells. Muscle sarcomeres use ATP hydrolysis to produce conrtractions by sliding the thin actin filament&lt;br /&gt;
past thick myosin filaments. The entire process is initiated by the slow formation of actin dimmers and trimers. These serve as a base for filament elongation. During elongation more actin monomers associate to than dissociate from either of the two ends, which results in the net growth of both filament ends. The steady-state phase is characterised by a dynamic equilibrium where the length of the actin filaments remains constant. This means while monomers are associating, other monomers are dissociating from the ends. In this dynamic equilibrium a stationery population of free actin monomers is established and is called the critical concentration. The polarity of the ends of the actin filaments play a key role in elongation. The ends of the filament are referred to as &amp;quot;barbed&amp;quot; and &amp;quot;pointed&amp;quot; according to the polarity of the arrowhead-like structure generated on binding with myosin subfragment 1. ) (Structure and Function of Actin by Wolfgang Kabsch) The barbed or plus end binds actin monomers faster than the pointed or minus end. Although its ATPase activity is not crucial for actin polymerisation, actin self-assembly is associated with the ATPase cycle, which powers this treadmilling process (Conformational Dynamics of Actin: Effectors and Implications for Biological Function) After the actin molecule is changed into a filament, the bound ATP is hydrolysed to ADP and inorganic phosphate is realeased. (Structure and Function of Actin by Wolfgang Kabsch) The formation of the F-actin is what stimulates the actin ATPase. The release of the  inorganic phosphate happens more slowly than the formation of the filament so that the growing filament has a cap of ATPactin at its barbed end, while monomers containing ADP and inorganic phosphate accumulate in the rest of the filament. &lt;br /&gt;
[[Image:Filament_formation.png]] [[Image:Treadmilling.gif]]&lt;br /&gt;
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The mature filament contains only ADP-actin. The tendency of actin to polymerize depends upon the affinity of actin monomers for filament ends. There is an actin monomer concentration below which actin will not polymerize known as the Critical Concentration (CC). At monomer concentrations above the CC, the actin will polymerize until the free monomer concentration is equal to the CC. (http://www.ncbi.nlm.nih.gov/books/NBK28299/) It is thought that the strong binding to the ATP is due to the amide proton of a serine 14 amino acid forming hydrogen bonds with the phosphate of ATP, thus stabilizing the nucleotide protein complex. (ACTIN: General Principles from Studies in Yeast). Pure actin can be switched between these states in the test-tube by altering the salt concentration. Actin in low salt conditions is in the G-state, while adding salts causes the actin to polymerise.   (http://www.bms.ed.ac.uk/research/others/smaciver/lectures/Cs1.htm Because actin polymerization is reversible, filaments can depolymerize by the dissociation of actin subunits, allowing actin filaments to be broken down when necessary. Therefore an apparent equilibrium exists between actin monomers and filaments, which is dependent on the concentration of free monomers. At this critical concentration, monomers and filaments are in apparent equilibrium.(Structure and Organization of Actin Filament)&lt;br /&gt;
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&#039;&#039;&#039;&#039;&#039;Function&#039;&#039;&#039;&#039;&#039;&lt;br /&gt;
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Studies of actin have shown that it has many functions within living cells. This range of functions is due to the diverse morphology of its structures and its interactions with actin-binding proteins (ABPs). (Conformational Dynamics of Actin: Effectors and Implications for Biological Function) The diversity in the functional ability of actin proteins is due in part to its interaction with actin-binding proteins. F-actin and G-actin interact with a wide array of proteins. There are over 150 known actin binding proteins (ABPs), which makes up 25% of cellular protein.  (http://www.cytoskeleton.com/actin?gclid=CNyRpoPC3a8CFeUEQAodTFkoCg) Actin has proved to be an important component in the cytoskeleton. The actin cytoskeleton is known as the microfilament and has a multi-purpose role in important cell processes such as maintaining cellular polarity, cell shape, cell motility, adhesion, cytokinesis and endocytosis. (Conformational Dynamics of Actin: Effectors and Implications for Biological Function)  Myosin molecules are a class of actin motors that aid in creating movement by “walking” across actin filaments and contracting muscle tissues. Microfilaments, also known as thin filaments are helical polymers composed of globular actin (G-actin). The polymers are polar and bind to nucleotides such as ATP in order to hydrolyze them. (Walter F., PhD. Boron (2003) Medical Physiology: A Cellular And Molecular Approaoch Elsevier/Saunders, pp. 1,300 ISBN:1-4160-2328-3. Page 28) Actin has no important enzymatic activity, however, it inhibits DNase I and activates the myosin ATPase. Actin filaments activate the Mg2+ ATPase activity and the movement of myosin along actin filaments produces the force for muscle contraction and other cell movements. Motility mechanisms which involve actin are controlled by the interaction in the G or F form with the various ABPs. (Structure and Function of Actin by Wolfgang Kabsch) &lt;br /&gt;
The mechanism is controlled by Ca2+ stimulated myosin light chain kinase. MLCK regulates the coming together of myosin and actin filaments and controls the force with which they contract. Actin-myosin filament networks are found in cells such as neurons and epithelial cells that don’t require movement. These networks provide neurons the ability to stretch cell processes long distances. (Walter F., PhD. Boron (2003) Medical Physiology: A Cellular And Molecular Approaoch Elsevier/Saunders, pp. 1,300 ISBN:1-4160-2328-3. Page 28) In higher order eukaryotic cells, actin filaments and myosin II filaments often come together to perform a function and then disassemble. For example in cytokineses, actin and myosin II filaments organize to form a contractile ring. The ring exists beneath the plasma membrane and during the M-phase of cell division, the ring contracts, pulling the plasma membrane inward and constricts the middle of the cell, leading to an eventual separation into two daughter cells. http://www.ncbi.nlm.nih.gov/books/NBK28299/)  &lt;br /&gt;
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&#039;&#039;&#039;&#039;&#039;Medical Implications&#039;&#039;&#039;&#039;&#039;&lt;br /&gt;
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Many of the functions of the cytoskeleton involve cytoskeleton and plasma membrane interactions. Proteins that exist between the two help to control cell shape, define the membrane domains and regulate cell/cell interactions and adhesion. There are at least 15 major protein species involved in the membrane-cytoskeleton of the human red blood cell. A mutation in any of these proteins can lead to cell fragility and cell death. Homologs of the erythrocyte membrane-skeleton can be found in many other cell types, which suggests the significance of these proteins. One of particular importance is the actin associated protein dystrophin. Dystrophin is an important part of the sarcolemmal membrane where it links the membrane to the sides of the actin filament bundles. Mutations in this protein leads to muscular dystrophies such as Duchenne’s disease or Becker muscular dystrophy. A homolog of dystrophin called utropin is thought to play a similar role in non-muscle cells.(http://www.cytoskeleton.com/actin?gclid=CNyRpoPC3a8CFeUEQAodTFkoCg)&lt;br /&gt;
  The genome of many mammals, including humans contains six actin genes, ACTA1, ACTA2, ACTB, ACTC, ACTG1 and ACTG2. Four of these are differentially expressed in cardiac (ACTC), smooth (ACTA2) enteric (ACTG2) and skeletal muscles (ACTA1); two are described as cytoplasmic actin genes (ACTB and ACTG1) and are expressed in all cells.  (Actin-Binding Proteins and Disease ) Actin mutations were not really known until the last 6-10 years. Mutations that have been found to cause human diseases have been found in the ACTC cardiac muscle gene which can cause dilated or hypertrophic cardiomyopathies including congenital fiber-type disproportion (CFTDP). Recently, mutations in ACTG1 have been associated with autosomal dominant deafness. Majority of actin disease mutations have been found to be dominant mutations. This has been the case for actin mutations is the Drosophila flight muscle-specific actin gene ACT88F. Scientists believe the common dominance of actin mutations is because the major functions of actin occur when it is in its F-form, associated with other proteins. The dominant actin mutations that lead to disease are mostly missense mutations. Actin mutations have been found in a variety of species such as yeast, nematodes and flies whose genomes are more accessible to mutagenesis. It is thought that there are three reasons why actin mutations are likely to be at very low frequencies in human populations: 1. actin is a ubiquitously expressed protein, 2. it is a highly conserved protein with many binding partners, so mutations in a large fraction of actin residues appear to cause a severe phenotype in humans and other organisms and 3. most actin mutations are dominant and given the usually severe effects, are not passed on to offspring. Thus familial actin mutants are likely to be relatively mild dominant alleles or recessive. Severe dominant alleles are likely to be de novo mutations. In the case of cytoplasmic actin, five ACT1G disease-causing mutant alleles are known so far and no disease-causing ACTB alleles have yet been described.&lt;br /&gt;
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&#039;&#039;&#039;&#039;&#039;References&#039;&#039;&#039;&#039;&#039;&lt;br /&gt;
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{{reflist}}&lt;br /&gt;
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&amp;lt;ref&amp;gt;PMID: 18573073&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 8489492&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;Alberts, B., Johnson, A., Lewis, J., Raff, M., Roberts, K., &amp;amp; Walter, P. (2002). Molecular biology of the cell. (3 ed.). New York: Garland Science.&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 1388079&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 20672362&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 2673365&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 2395459&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 2395461&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 8970724 &amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 2395459&amp;lt;/ref&amp;gt; &lt;br /&gt;
&amp;lt;ref&amp;gt;Boron, W., &amp;amp; Boulpaep, E. (2008). Medical physiology. (2 ed., pp. 14-20). Saunders Elsevier. Retrieved from http://books.google.com/books/about/Medical_Physiology_E_Book.html?id=HlMJRw08ihgC&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;Remedios, C., &amp;amp; Chhabra, D. (2008). Actin-binding proteins and diseases. (8 ed., pp. 16-18). New York: Springer.&amp;lt;/ref&amp;gt;&lt;/div&gt;</summary>
		<author><name>Brittany Smith</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_471&amp;diff=1384369</id>
		<title>Sandbox Reserved 471</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_471&amp;diff=1384369"/>
		<updated>2012-05-02T14:33:18Z</updated>

		<summary type="html">&lt;p&gt;Brittany Smith: &lt;/p&gt;
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&lt;div&gt;&amp;lt;Structure load=&#039;3hbt&#039; size=&#039;500&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;Globular actin (G-actin) in its native conformation&#039; scene=&#039;Insert optional scene name here&#039; /&amp;gt; &amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Sandbox_Reserved_Robert_B_Rose_1}}&lt;br /&gt;
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&#039;&#039;&#039;&#039;&#039;Introduction&#039;&#039;&#039;&#039;&#039;&lt;br /&gt;
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Actin is a spherical 43 kilo-Dalton protein that is found in many cell types. It belongs to the class of proteins known as [http://en.wikipedia.org/wiki/Motor_proteins motor proteins]. Motor proteins function in the movement of substances across a substrate by utilizing [http://en.wikipedia.org/wiki/Adenosine_triphosphate ATP] as an energy source. It is one of the most highly conserved proteins differing by no more than 20% in species ranging from yeast to humans. (&amp;quot;Mediation, Modulation and Consequences of Membrane-Cytoskeleton Interactions&amp;quot;.) In an alignment of the 81 unique actin protein sequences, scientists found that 17.4% of positions in the consensus sequence are invariant in all actins, 35.6 % of positions are invariant or have a difference in only one of the 81 actins, and 40.4% of positions are invariant or have what are considered conservative changes (Review Article Molecular genetics of actin function)   &lt;br /&gt;
Actin is the monomeric subunit of microfilaments, one of the three key components of the [http://en.wikipedia.org/wiki/Cytoskeleton cytoskeleton] and thin filaments, which is part of the contractile unit in muscle cells. The cytoskeleton is a three-dimensional complex of filamentous protein that creates the shape and structure of cells, as well as fills in the gaps between organelles. This is what provides the cells with motility. There are three main proteins that make up the cytoskeleton. They are microfilaments, intermediate filaments and microtubules.  (http://www.bms.ed.ac.uk/research/others/smaciver/lectures/Cs1.htm&lt;br /&gt;
An Introduction to the Cytoskeleton. CS1) Actin exists in two forms, the monomeric, globular form (G-actin) and the polymeric, filamentous form (F-actin). (Conformational Dynamics of Actin: Effectors and Implications for Biological Function)In vertebrates there are three main groups of actin isoforms which include alpha, beta, and gamma. These isotypes (α, β and γ), show &amp;gt;90% amino-acid homology between isotypes and &amp;gt;98% homology within members of a particular isotypic group. (http://www.cytoskeleton.com/actin?gclid=CNyRpoPC3a8CFeUEQAodTFkoCg)  The alpha actins, found in muscle tissues, are a major constituent of the contractile apparatus. The beta and gamma actins coexist in most cell types as components of the cytoskeleton, and as mediators of internal cell motility.&lt;br /&gt;
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&#039;&#039;&#039;&#039;&#039;History&#039;&#039;&#039;&#039;&#039;&lt;br /&gt;
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In 1942, [http://en.wikipedia.org/wiki/Brun%C3%B3_Ferenc_Straub Bruno Ferenc Straub] isolated actin as a water soluble component of muscle acetone powder. He found that at increased ionic strength the G-actin molecules would come together to form the F-actin filament. Actin was later found in non-muscle cells and its structure was seen through the use of [http://en.wikipedia.org/wiki/Immunofluorescence_microscopy immunofluorescence microscopy]. The next major accomplishment came with the discovery of the amino acid sequence. This allowed researchers to locate chemical and enzymatic alterations and to study how they affected the properties of the molecule. The high conservation of actin’s structure throughout various species was discovered through [http://en.wikipedia.org/wiki/Immunofluorescence_microscopy comparative sequence analysis]. In 1950, Straub reported that actin contained bound ATP and that during the polymerization of the monomers into microfilaments, the ATP was hydrolyzed to ADP and inorganic phosphate. (Straub FB, Feuer G (1989). &amp;quot;Adenosinetriphosphate. The functional group of actin. 1950&amp;quot;. Biochim. Biophys. Acta 1000: 180–95.PMID 2673365.) His discovery led to his suggestion that ATP-bound actin transforming into ADP-bound actin was what created muscle contractions. In the early 1980’s the principles of actin polymerization were exposed and the first actin-binding proteins (ABPs) were characterized according to their in vivo and in vitro functions. In 1990, the crystal structure of G-actin was solved by Kabsch. (Kabsch W, Mannherz HG, Suck D, Pai EF, Holmes KC (September 1990). &amp;quot;Atomic structure of the actin:DNase I complex&amp;quot;. Nature 347 (6288): 37–44. doi:10.1038/347037a0. PMID 2395459.) In this same year a model of F-actin was suggested by Holmes et al. The model was created by fitting a helix of G-actin structures according to low-resolution fiber diffraction data from the F-actin. ( Holmes KC, Popp D, Gebhard W, Kabsch W (September 1990). &amp;quot;Atomic model of the actin filament&amp;quot;. Nature 347 (6288): 44–9.doi:10.1038/347044a0. PMID 2395461.) Further advances in cryoelectron microscopy allowed scientists to find the binding sites for myosin and tropomyosin. A combination of [http://en.wikipedia.org/wiki/X-ray_crystallography X-ray crystallography] with fiber diffraction led to an atomic model of F-actin. (Structure and Function of Actin by Wolfgang Kabsch) After some debate actin also became generally accepted as an important structural and functional component of the cell nucleus (Conformational Dynamics of Actin: Effectors and Implications for Biological Function) Since this pioneering work by Straub, interest in actin has increased tremendously and so has the realization of how complex its structure is.&lt;br /&gt;
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&#039;&#039;&#039;&#039;&#039;Structure&#039;&#039;&#039;&#039;&#039;&lt;br /&gt;
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[[Image:Actin Image.gif]]&lt;br /&gt;
&lt;br /&gt;
Actin exists in both its monomeric (globular, G-actin) and polymeric (filamentous or F-actin) form. The actin monomer is approximately pear shaped. Actin is composed of 376 residues that are folded into two large domains, each comprised of two subdomains. Its secondary structure is 41% helical (22 helices; 153 residues) and 20% beta sheet (20 strands; 77 residues). (PDB) The actin filament is a double-stranded, right-handed helix with a half-pitch of 37 nm and a one-start left-handed genetic helix with a rise of 2.75 nm per monomer. The width of the filament is within the range of 7–10 nm. (Conformational Dynamics of Actin: Effectors and Implications for Biological Function) The large domains are organized to form a hinged molecule with a deep cleft. Subdomains 1 and 3 are structurally related, whereas subdomains 2 and 4 can be viewed as large insertions into subdomains 1 and 3, respectively. There is moderately little contact between the two major domains of actin; the polypeptide chain passes twice between these domains at the loop centered at residue Lys336 and at the linker helix Gln137-Ser145, which functions as the hinge axis between the domains. As a result, two clefts are formed between the domains. Within the upper cleft are the cofactors, an adenine nucleotide and a divalent metal ion, usually magnesium. It is thought that the cofactors interact with the domains on either side, increasing their connectivity. The lower cleft between domains 1 and 3 is lined by residues Tyr143, Ala144, Gly146, Thr148, Gly168, Ile341, Ile345, Leu346, Leu349, Thr351, and Met355, which are predominantly hydrophobic. This cleft constitutes the major binding site for most ABPs, and is thus called the targetbinding or hydrophobic cleft. (Actin Structure and Function). Most of the interaction that occur in the subunit are electrostatic in character but there are also hydrophobic interactions.  (Actin Structure and Function)&lt;br /&gt;
Under physiologic conditions, G-actin is transformed to F-actin by ATP. After G-actin is bound to an ATP molecule it can then bind to another ATP bound monomer to form an unstable dimer. It can then add a third ATP bound monomer to create a stable trimer that serves as a basis for building fibrous actin (F-actin). Once the F-actin is formed the ATP can be hydrolyzed, keeping the bound ADP and releasing an inorganic phosphate. The polymer can undergo a process known as treadmilling. This is where the polymer continuously grows at its positive end but disassembles at its negative end. This process requires a permanent source of energy such as ATP (Walter F., PhD. Boron (2003) Medical Physiology: A Cellular And Molecular Approaoch Elsevier/Saunders, pp. 1,300 ISBN:1-4160-2328-3. Page 28) &lt;br /&gt;
Unlike G-actin, F-actin does not form crystalline arrays that can be analyzed by X-ray crystallography. Instead it can be found by using fiber diffraction, electron-microscopy data and mathematical models. The structure can then be refined and remodeled as necessary. (ACTIN: General Principles from Studies in Yeast) The first high-resolution structural model of the actin filament was at a resolution of 8 A ˚ and was proposed by Holmes et al., 1990. Recently, an improved high-resolution F-actin model was created by Oda et al., 2009 with a resolution of 3.3 A ˚ in the radial and 5.6 A ˚ in the equatorial directions. &lt;br /&gt;
Vertebrates express three main actin isoforms, including three α-isoforms of skeletal, cardiac, and smooth muscles and the β- and γ- isoforms expressed in nonmuscle and muscle cells. Actin isoforms are different in a few of its amino acids, with most variations occurring toward the N terminus. Actin also undergoes various forms of posttranslational modifications. For instance, His73 of skeletal muscle α-actin is methylated, the N-terminal methionine and cysteine residues are acetylated and cleaved, and the resulting N-terminal aspartic acid is then re-acetylated. Since the original determination of the crystal structure of G-actin, over 80 structures of actin have been reported.  The majority of these structures have been obtained as complexes with actin-binding proteins (ABPs). (Actin Structure and Function)&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;&#039;&#039;Mechanism of Action&#039;&#039;&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
Polymerization mechanism&lt;br /&gt;
At increased ionic strength, G-actin molecules polymerize into filaments, known as F-actin. F-actin is the main component of the thin filaments in sarcomeres of muscle cells. Muscle sarcomeres use ATP hydrolysis to produce conrtractions by sliding the thin actin filament&lt;br /&gt;
past thick myosin filaments. The entire process is initiated by the slow formation of actin dimmers and trimers. These serve as a base for filament elongation. During elongation more actin monomers associate to than dissociate from either of the two ends, which results in the net growth of both filament ends. The steady-state phase is characterised by a dynamic equilibrium where the length of the actin filaments remains constant. This means while monomers are associating, other monomers are dissociating from the ends. In this dynamic equilibrium a stationery population of free actin monomers is established and is called the critical concentration. The polarity of the ends of the actin filaments play a key role in elongation. The ends of the filament are referred to as &amp;quot;barbed&amp;quot; and &amp;quot;pointed&amp;quot; according to the polarity of the arrowhead-like structure generated on binding with myosin subfragment 1. ) (Structure and Function of Actin by Wolfgang Kabsch) The barbed or plus end binds actin monomers faster than the pointed or minus end. Although its ATPase activity is not crucial for actin polymerisation, actin self-assembly is associated with the ATPase cycle, which powers this treadmilling process (Conformational Dynamics of Actin: Effectors and Implications for Biological Function) After the actin molecule is changed into a filament, the bound ATP is hydrolysed to ADP and inorganic phosphate is realeased. (Structure and Function of Actin by Wolfgang Kabsch) The formation of the F-actin is what stimulates the actin ATPase. The release of the  inorganic phosphate happens more slowly than the formation of the filament so that the growing filament has a cap of ATPactin at its barbed end, while monomers containing ADP and inorganic phosphate accumulate in the rest of the filament. &lt;br /&gt;
[[Image:Filament_formation.png]] [[Image:Treadmilling.gif]]&lt;br /&gt;
&lt;br /&gt;
The mature filament contains only ADP-actin. The tendency of actin to polymerize depends upon the affinity of actin monomers for filament ends. There is an actin monomer concentration below which actin will not polymerize known as the Critical Concentration (CC). At monomer concentrations above the CC, the actin will polymerize until the free monomer concentration is equal to the CC. (http://www.ncbi.nlm.nih.gov/books/NBK28299/) It is thought that the strong binding to the ATP is due to the amide proton of a serine 14 amino acid forming hydrogen bonds with the phosphate of ATP, thus stabilizing the nucleotide protein complex. (ACTIN: General Principles from Studies in Yeast). Pure actin can be switched between these states in the test-tube by altering the salt concentration. Actin in low salt conditions is in the G-state, while adding salts causes the actin to polymerise.   (http://www.bms.ed.ac.uk/research/others/smaciver/lectures/Cs1.htm Because actin polymerization is reversible, filaments can depolymerize by the dissociation of actin subunits, allowing actin filaments to be broken down when necessary. Therefore an apparent equilibrium exists between actin monomers and filaments, which is dependent on the concentration of free monomers. At this critical concentration, monomers and filaments are in apparent equilibrium.(Structure and Organization of Actin Filament)&lt;br /&gt;
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&#039;&#039;&#039;&#039;&#039;Function&#039;&#039;&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
Studies of actin have shown that it has many functions within living cells. This range of functions is due to the diverse morphology of its structures and its interactions with actin-binding proteins (ABPs). (Conformational Dynamics of Actin: Effectors and Implications for Biological Function) The diversity in the functional ability of actin proteins is due in part to its interaction with actin-binding proteins. F-actin and G-actin interact with a wide array of proteins. There are over 150 known actin binding proteins (ABPs), which makes up 25% of cellular protein.  (http://www.cytoskeleton.com/actin?gclid=CNyRpoPC3a8CFeUEQAodTFkoCg) Actin has proved to be an important component in the cytoskeleton. The actin cytoskeleton is known as the microfilament and has a multi-purpose role in important cell processes such as maintaining cellular polarity, cell shape, cell motility, adhesion, cytokinesis and endocytosis. (Conformational Dynamics of Actin: Effectors and Implications for Biological Function)  Myosin molecules are a class of actin motors that aid in creating movement by “walking” across actin filaments and contracting muscle tissues. Microfilaments, also known as thin filaments are helical polymers composed of globular actin (G-actin). The polymers are polar and bind to nucleotides such as ATP in order to hydrolyze them. (Walter F., PhD. Boron (2003) Medical Physiology: A Cellular And Molecular Approaoch Elsevier/Saunders, pp. 1,300 ISBN:1-4160-2328-3. Page 28) Actin has no important enzymatic activity, however, it inhibits DNase I and activates the myosin ATPase. Actin filaments activate the Mg2+ ATPase activity and the movement of myosin along actin filaments produces the force for muscle contraction and other cell movements. Motility mechanisms which involve actin are controlled by the interaction in the G or F form with the various ABPs. (Structure and Function of Actin by Wolfgang Kabsch) &lt;br /&gt;
The mechanism is controlled by Ca2+ stimulated myosin light chain kinase. MLCK regulates the coming together of myosin and actin filaments and controls the force with which they contract. Actin-myosin filament networks are found in cells such as neurons and epithelial cells that don’t require movement. These networks provide neurons the ability to stretch cell processes long distances. (Walter F., PhD. Boron (2003) Medical Physiology: A Cellular And Molecular Approaoch Elsevier/Saunders, pp. 1,300 ISBN:1-4160-2328-3. Page 28) In higher order eukaryotic cells, actin filaments and myosin II filaments often come together to perform a function and then disassemble. For example in cytokineses, actin and myosin II filaments organize to form a contractile ring. The ring exists beneath the plasma membrane and during the M-phase of cell division, the ring contracts, pulling the plasma membrane inward and constricts the middle of the cell, leading to an eventual separation into two daughter cells. http://www.ncbi.nlm.nih.gov/books/NBK28299/)  &lt;br /&gt;
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&#039;&#039;&#039;&#039;&#039;Medical Implications&#039;&#039;&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
Many of the functions of the cytoskeleton involve cytoskeleton and plasma membrane interactions. Proteins that exist between the two help to control cell shape, define the membrane domains and regulate cell/cell interactions and adhesion. There are at least 15 major protein species involved in the membrane-cytoskeleton of the human red blood cell. A mutation in any of these proteins can lead to cell fragility and cell death. Homologs of the erythrocyte membrane-skeleton can be found in many other cell types, which suggests the significance of these proteins. One of particular importance is the actin associated protein dystrophin. Dystrophin is an important part of the sarcolemmal membrane where it links the membrane to the sides of the actin filament bundles. Mutations in this protein leads to muscular dystrophies such as Duchenne’s disease or Becker muscular dystrophy. A homolog of dystrophin called utropin is thought to play a similar role in non-muscle cells.(http://www.cytoskeleton.com/actin?gclid=CNyRpoPC3a8CFeUEQAodTFkoCg)&lt;br /&gt;
  The genome of many mammals, including humans contains six actin genes, ACTA1, ACTA2, ACTB, ACTC, ACTG1 and ACTG2. Four of these are differentially expressed in cardiac (ACTC), smooth (ACTA2) enteric (ACTG2) and skeletal muscles (ACTA1); two are described as cytoplasmic actin genes (ACTB and ACTG1) and are expressed in all cells.  (Actin-Binding Proteins and Disease ) Actin mutations were not really known until the last 6-10 years. Mutations that have been found to cause human diseases have been found in the ACTC cardiac muscle gene which can cause dilated or hypertrophic cardiomyopathies including congenital fiber-type disproportion (CFTDP). Recently, mutations in ACTG1 have been associated with autosomal dominant deafness. Majority of actin disease mutations have been found to be dominant mutations. This has been the case for actin mutations is the Drosophila flight muscle-specific actin gene ACT88F. Scientists believe the common dominance of actin mutations is because the major functions of actin occur when it is in its F-form, associated with other proteins. The dominant actin mutations that lead to disease are mostly missense mutations. Actin mutations have been found in a variety of species such as yeast, nematodes and flies whose genomes are more accessible to mutagenesis. It is thought that there are three reasons why actin mutations are likely to be at very low frequencies in human populations: 1. actin is a ubiquitously expressed protein, 2. it is a highly conserved protein with many binding partners, so mutations in a large fraction of actin residues appear to cause a severe phenotype in humans and other organisms and 3. most actin mutations are dominant and given the usually severe effects, are not passed on to offspring. Thus familial actin mutants are likely to be relatively mild dominant alleles or recessive. Severe dominant alleles are likely to be de novo mutations. In the case of cytoplasmic actin, five ACT1G disease-causing mutant alleles are known so far and no disease-causing ACTB alleles have yet been described.&lt;br /&gt;
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&#039;&#039;&#039;&#039;&#039;References&#039;&#039;&#039;&#039;&#039;&lt;br /&gt;
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{{reflist}}&lt;br /&gt;
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&amp;lt;ref&amp;gt;PMID: 18573073&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 8489492&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;Alberts, B., Johnson, A., Lewis, J., Raff, M., Roberts, K., &amp;amp; Walter, P. (2002). Molecular biology of the cell. (3 ed.). New York: Garland Science.&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 1388079&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 20672362&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 2673365&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 2395459&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 2395461&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 8970724 &amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 2395459&amp;lt;/ref&amp;gt; &lt;br /&gt;
&amp;lt;ref&amp;gt;Boron, W., &amp;amp; Boulpaep, E. (2008). Medical physiology. (2 ed., pp. 14-20). Saunders Elsevier. Retrieved from http://books.google.com/books/about/Medical_Physiology_E_Book.html?id=HlMJRw08ihgC&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;Remedios, C., &amp;amp; Chhabra, D. (2008). Actin-binding proteins and diseases. (8 ed., pp. 16-18). New York: Springer.&amp;lt;/ref&amp;gt;&lt;/div&gt;</summary>
		<author><name>Brittany Smith</name></author>
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		<title>Sandbox Reserved 471</title>
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		<updated>2012-05-02T14:31:39Z</updated>

		<summary type="html">&lt;p&gt;Brittany Smith: &lt;/p&gt;
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&#039;&#039;&#039;&#039;&#039;Introduction&#039;&#039;&#039;&#039;&#039;&lt;br /&gt;
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Actin is a spherical 43 kilo-Dalton protein that is found in many cell types. It belongs to the class of proteins known as [http://en.wikipedia.org/wiki/Motor_proteins motor proteins]. Motor proteins function in the movement of substances across a substrate by utilizing [http://en.wikipedia.org/wiki/Adenosine_triphosphate ATP] as an energy source. It is one of the most highly conserved proteins differing by no more than 20% in species ranging from yeast to humans. (&amp;quot;Mediation, Modulation and Consequences of Membrane-Cytoskeleton Interactions&amp;quot;.) In an alignment of the 81 unique actin protein sequences, scientists found that 17.4% of positions in the consensus sequence are invariant in all actins, 35.6 % of positions are invariant or have a difference in only one of the 81 actins, and 40.4% of positions are invariant or have what are considered conservative changes (Review Article Molecular genetics of actin function)   &lt;br /&gt;
Actin is the monomeric subunit of microfilaments, one of the three key components of the [http://en.wikipedia.org/wiki/Cytoskeleton cytoskeleton] and thin filaments, which is part of the contractile unit in muscle cells. The cytoskeleton is a three-dimensional complex of filamentous protein that creates the shape and structure of cells, as well as fills in the gaps between organelles. This is what provides the cells with motility. There are three main proteins that make up the cytoskeleton. They are microfilaments, intermediate filaments and microtubules.  (http://www.bms.ed.ac.uk/research/others/smaciver/lectures/Cs1.htm&lt;br /&gt;
An Introduction to the Cytoskeleton. CS1) Actin exists in two forms, the monomeric, globular form (G-actin) and the polymeric, filamentous form (F-actin). (Conformational Dynamics of Actin: Effectors and Implications for Biological Function)In vertebrates there are three main groups of actin isoforms which include alpha, beta, and gamma. These isotypes (α, β and γ), show &amp;gt;90% amino-acid homology between isotypes and &amp;gt;98% homology within members of a particular isotypic group. (http://www.cytoskeleton.com/actin?gclid=CNyRpoPC3a8CFeUEQAodTFkoCg)  The alpha actins, found in muscle tissues, are a major constituent of the contractile apparatus. The beta and gamma actins coexist in most cell types as components of the cytoskeleton, and as mediators of internal cell motility.&lt;br /&gt;
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&#039;&#039;&#039;&#039;&#039;History&#039;&#039;&#039;&#039;&#039;&lt;br /&gt;
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In 1942, [http://en.wikipedia.org/wiki/Brun%C3%B3_Ferenc_Straub Bruno Ferenc Straub] isolated actin as a water soluble component of muscle acetone powder. He found that at increased ionic strength the G-actin molecules would come together to form the F-actin filament. Actin was later found in non-muscle cells and its structure was seen through the use of [http://en.wikipedia.org/wiki/Immunofluorescence_microscopy immunofluorescence microscopy]. The next major accomplishment came with the discovery of the amino acid sequence. This allowed researchers to locate chemical and enzymatic alterations and to study how they affected the properties of the molecule. The high conservation of actin’s structure throughout various species was discovered through [http://en.wikipedia.org/wiki/Immunofluorescence_microscopy comparative sequence analysis]. In 1950, Straub reported that actin contained bound ATP and that during the polymerization of the monomers into microfilaments, the ATP was hydrolyzed to ADP and inorganic phosphate. (Straub FB, Feuer G (1989). &amp;quot;Adenosinetriphosphate. The functional group of actin. 1950&amp;quot;. Biochim. Biophys. Acta 1000: 180–95.PMID 2673365.) His discovery led to his suggestion that ATP-bound actin transforming into ADP-bound actin was what created muscle contractions. In the early 1980’s the principles of actin polymerization were exposed and the first actin-binding proteins (ABPs) were characterized according to their in vivo and in vitro functions. In 1990, the crystal structure of G-actin was solved by Kabsch. (Kabsch W, Mannherz HG, Suck D, Pai EF, Holmes KC (September 1990). &amp;quot;Atomic structure of the actin:DNase I complex&amp;quot;. Nature 347 (6288): 37–44. doi:10.1038/347037a0. PMID 2395459.) In this same year a model of F-actin was suggested by Holmes et al. The model was created by fitting a helix of G-actin structures according to low-resolution fiber diffraction data from the F-actin. ( Holmes KC, Popp D, Gebhard W, Kabsch W (September 1990). &amp;quot;Atomic model of the actin filament&amp;quot;. Nature 347 (6288): 44–9.doi:10.1038/347044a0. PMID 2395461.) Further advances in cryoelectron microscopy allowed scientists to find the binding sites for myosin and tropomyosin. A combination of [http://en.wikipedia.org/wiki/X-ray_crystallography X-ray crystallography] with fiber diffraction led to an atomic model of F-actin. (Structure and Function of Actin by Wolfgang Kabsch) After some debate actin also became generally accepted as an important structural and functional component of the cell nucleus (Conformational Dynamics of Actin: Effectors and Implications for Biological Function) Since this pioneering work by Straub, interest in actin has increased tremendously and so has the realization of how complex its structure is.&lt;br /&gt;
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&#039;&#039;&#039;&#039;&#039;Structure&#039;&#039;&#039;&#039;&#039;&lt;br /&gt;
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[[Image:Actin Image.gif]]&lt;br /&gt;
&lt;br /&gt;
Actin exists in both its monomeric (globular, G-actin) and polymeric (filamentous or F-actin) form. The actin monomer is approximately pear shaped. Actin is composed of 376 residues that are folded into two large domains, each comprised of two subdomains. Its secondary structure is 41% helical (22 helices; 153 residues) and 20% beta sheet (20 strands; 77 residues). (PDB) The actin filament is a double-stranded, right-handed helix with a half-pitch of 37 nm and a one-start left-handed genetic helix with a rise of 2.75 nm per monomer. The width of the filament is within the range of 7–10 nm. (Conformational Dynamics of Actin: Effectors and Implications for Biological Function) The large domains are organized to form a hinged molecule with a deep cleft. Subdomains 1 and 3 are structurally related, whereas subdomains 2 and 4 can be viewed as large insertions into subdomains 1 and 3, respectively. There is moderately little contact between the two major domains of actin; the polypeptide chain passes twice between these domains at the loop centered at residue Lys336 and at the linker helix Gln137-Ser145, which functions as the hinge axis between the domains. As a result, two clefts are formed between the domains. Within the upper cleft are the cofactors, an adenine nucleotide and a divalent metal ion, usually magnesium. It is thought that the cofactors interact with the domains on either side, increasing their connectivity. The lower cleft between domains 1 and 3 is lined by residues Tyr143, Ala144, Gly146, Thr148, Gly168, Ile341, Ile345, Leu346, Leu349, Thr351, and Met355, which are predominantly hydrophobic. This cleft constitutes the major binding site for most ABPs, and is thus called the targetbinding or hydrophobic cleft. (Actin Structure and Function). Most of the interaction that occur in the subunit are electrostatic in character but there are also hydrophobic interactions.  (Actin Structure and Function)&lt;br /&gt;
Under physiologic conditions, G-actin is transformed to F-actin by ATP. After G-actin is bound to an ATP molecule it can then bind to another ATP bound monomer to form an unstable dimer. It can then add a third ATP bound monomer to create a stable trimer that serves as a basis for building fibrous actin (F-actin). Once the F-actin is formed the ATP can be hydrolyzed, keeping the bound ADP and releasing an inorganic phosphate. The polymer can undergo a process known as treadmilling. This is where the polymer continuously grows at its positive end but disassembles at its negative end. This process requires a permanent source of energy such as ATP (Walter F., PhD. Boron (2003) Medical Physiology: A Cellular And Molecular Approaoch Elsevier/Saunders, pp. 1,300 ISBN:1-4160-2328-3. Page 28) &lt;br /&gt;
Unlike G-actin, F-actin does not form crystalline arrays that can be analyzed by X-ray crystallography. Instead it can be found by using fiber diffraction, electron-microscopy data and mathematical models. The structure can then be refined and remodeled as necessary. (ACTIN: General Principles from Studies in Yeast) The first high-resolution structural model of the actin filament was at a resolution of 8 A ˚ and was proposed by Holmes et al., 1990. Recently, an improved high-resolution F-actin model was created by Oda et al., 2009 with a resolution of 3.3 A ˚ in the radial and 5.6 A ˚ in the equatorial directions. &lt;br /&gt;
Vertebrates express three main actin isoforms, including three α-isoforms of skeletal, cardiac, and smooth muscles and the β- and γ- isoforms expressed in nonmuscle and muscle cells. Actin isoforms are different in a few of its amino acids, with most variations occurring toward the N terminus. Actin also undergoes various forms of posttranslational modifications. For instance, His73 of skeletal muscle α-actin is methylated, the N-terminal methionine and cysteine residues are acetylated and cleaved, and the resulting N-terminal aspartic acid is then re-acetylated. Since the original determination of the crystal structure of G-actin, over 80 structures of actin have been reported.  The majority of these structures have been obtained as complexes with actin-binding proteins (ABPs). (Actin Structure and Function)&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;&#039;&#039;Mechanism of Action&#039;&#039;&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
Polymerization mechanism&lt;br /&gt;
At increased ionic strength, G-actin molecules polymerize into filaments, known as F-actin. F-actin is the main component of the thin filaments in sarcomeres of muscle cells. Muscle sarcomeres use ATP hydrolysis to produce conrtractions by sliding the thin actin filament&lt;br /&gt;
past thick myosin filaments. The entire process is initiated by the slow formation of actin dimmers and trimers. These serve as a base for filament elongation. During elongation more actin monomers associate to than dissociate from either of the two ends, which results in the net growth of both filament ends. The steady-state phase is characterised by a dynamic equilibrium where the length of the actin filaments remains constant. This means while monomers are associating, other monomers are dissociating from the ends. In this dynamic equilibrium a stationery population of free actin monomers is established and is called the critical concentration. The polarity of the ends of the actin filaments play a key role in elongation. The ends of the filament are referred to as &amp;quot;barbed&amp;quot; and &amp;quot;pointed&amp;quot; according to the polarity of the arrowhead-like structure generated on binding with myosin subfragment 1. ) (Structure and Function of Actin by Wolfgang Kabsch) The barbed or plus end binds actin monomers faster than the pointed or minus end. Although its ATPase activity is not crucial for actin polymerisation, actin self-assembly is associated with the ATPase cycle, which powers this treadmilling process (Conformational Dynamics of Actin: Effectors and Implications for Biological Function) After the actin molecule is changed into a filament, the bound ATP is hydrolysed to ADP and inorganic phosphate is realeased. (Structure and Function of Actin by Wolfgang Kabsch) The formation of the F-actin is what stimulates the actin ATPase. The release of the  inorganic phosphate happens more slowly than the formation of the filament so that the growing filament has a cap of ATPactin at its barbed end, while monomers containing ADP and inorganic phosphate accumulate in the rest of the filament. &lt;br /&gt;
[[Image:Filament_formation.png]] [[Image:Treadmilling.gif]]&lt;br /&gt;
&lt;br /&gt;
The mature filament contains only ADP-actin. The tendency of actin to polymerize depends upon the affinity of actin monomers for filament ends. There is an actin monomer concentration below which actin will not polymerize known as the Critical Concentration (CC). At monomer concentrations above the CC, the actin will polymerize until the free monomer concentration is equal to the CC. (http://www.ncbi.nlm.nih.gov/books/NBK28299/) It is thought that the strong binding to the ATP is due to the amide proton of a serine 14 amino acid forming hydrogen bonds with the phosphate of ATP, thus stabilizing the nucleotide protein complex. (ACTIN: General Principles from Studies in Yeast). Pure actin can be switched between these states in the test-tube by altering the salt concentration. Actin in low salt conditions is in the G-state, while adding salts causes the actin to polymerise.   (http://www.bms.ed.ac.uk/research/others/smaciver/lectures/Cs1.htm Because actin polymerization is reversible, filaments can depolymerize by the dissociation of actin subunits, allowing actin filaments to be broken down when necessary. Therefore an apparent equilibrium exists between actin monomers and filaments, which is dependent on the concentration of free monomers. At this critical concentration, monomers and filaments are in apparent equilibrium.(Structure and Organization of Actin Filament)&lt;br /&gt;
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&#039;&#039;&#039;&#039;&#039;Function&#039;&#039;&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
Studies of actin have shown that it has many functions within living cells. This range of functions is due to the diverse morphology of its structures and its interactions with actin-binding proteins (ABPs). (Conformational Dynamics of Actin: Effectors and Implications for Biological Function) The diversity in the functional ability of actin proteins is due in part to its interaction with actin-binding proteins. F-actin and G-actin interact with a wide array of proteins. There are over 150 known actin binding proteins (ABPs), which makes up 25% of cellular protein.  (http://www.cytoskeleton.com/actin?gclid=CNyRpoPC3a8CFeUEQAodTFkoCg) Actin has proved to be an important component in the cytoskeleton. The actin cytoskeleton is known as the microfilament and has a multi-purpose role in important cell processes such as maintaining cellular polarity, cell shape, cell motility, adhesion, cytokinesis and endocytosis. (Conformational Dynamics of Actin: Effectors and Implications for Biological Function)  Myosin molecules are a class of actin motors that aid in creating movement by “walking” across actin filaments and contracting muscle tissues. Microfilaments, also known as thin filaments are helical polymers composed of globular actin (G-actin). The polymers are polar and bind to nucleotides such as ATP in order to hydrolyze them. (Walter F., PhD. Boron (2003) Medical Physiology: A Cellular And Molecular Approaoch Elsevier/Saunders, pp. 1,300 ISBN:1-4160-2328-3. Page 28) Actin has no important enzymatic activity, however, it inhibits DNase I and activates the myosin ATPase. Actin filaments activate the Mg2+ ATPase activity and the movement of myosin along actin filaments produces the force for muscle contraction and other cell movements. Motility mechanisms which involve actin are controlled by the interaction in the G or F form with the various ABPs. (Structure and Function of Actin by Wolfgang Kabsch) &lt;br /&gt;
The mechanism is controlled by Ca2+ stimulated myosin light chain kinase. MLCK regulates the coming together of myosin and actin filaments and controls the force with which they contract. Actin-myosin filament networks are found in cells such as neurons and epithelial cells that don’t require movement. These networks provide neurons the ability to stretch cell processes long distances. (Walter F., PhD. Boron (2003) Medical Physiology: A Cellular And Molecular Approaoch Elsevier/Saunders, pp. 1,300 ISBN:1-4160-2328-3. Page 28) In higher order eukaryotic cells, actin filaments and myosin II filaments often come together to perform a function and then disassemble. For example in cytokineses, actin and myosin II filaments organize to form a contractile ring. The ring exists beneath the plasma membrane and during the M-phase of cell division, the ring contracts, pulling the plasma membrane inward and constricts the middle of the cell, leading to an eventual separation into two daughter cells. http://www.ncbi.nlm.nih.gov/books/NBK28299/)  &lt;br /&gt;
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&#039;&#039;&#039;&#039;&#039;Medical Implications&#039;&#039;&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
Many of the functions of the cytoskeleton involve cytoskeleton and plasma membrane interactions. Proteins that exist between the two help to control cell shape, define the membrane domains and regulate cell/cell interactions and adhesion. There are at least 15 major protein species involved in the membrane-cytoskeleton of the human red blood cell. A mutation in any of these proteins can lead to cell fragility and cell death. Homologs of the erythrocyte membrane-skeleton can be found in many other cell types, which suggests the significance of these proteins. One of particular importance is the actin associated protein dystrophin. Dystrophin is an important part of the sarcolemmal membrane where it links the membrane to the sides of the actin filament bundles. Mutations in this protein leads to muscular dystrophies such as Duchenne’s disease or Becker muscular dystrophy. A homolog of dystrophin called utropin is thought to play a similar role in non-muscle cells.(http://www.cytoskeleton.com/actin?gclid=CNyRpoPC3a8CFeUEQAodTFkoCg)&lt;br /&gt;
  The genome of many mammals, including humans contains six actin genes, ACTA1, ACTA2, ACTB, ACTC, ACTG1 and ACTG2. Four of these are differentially expressed in cardiac (ACTC), smooth (ACTA2) enteric (ACTG2) and skeletal muscles (ACTA1); two are described as cytoplasmic actin genes (ACTB and ACTG1) and are expressed in all cells.  (Actin-Binding Proteins and Disease ) Actin mutations were not really known until the last 6-10 years. Mutations that have been found to cause human diseases have been found in the ACTC cardiac muscle gene which can cause dilated or hypertrophic cardiomyopathies including congenital fiber-type disproportion (CFTDP). Recently, mutations in ACTG1 have been associated with autosomal dominant deafness. Majority of actin disease mutations have been found to be dominant mutations. This has been the case for actin mutations is the Drosophila flight muscle-specific actin gene ACT88F. Scientists believe the common dominance of actin mutations is because the major functions of actin occur when it is in its F-form, associated with other proteins. The dominant actin mutations that lead to disease are mostly missense mutations. Actin mutations have been found in a variety of species such as yeast, nematodes and flies whose genomes are more accessible to mutagenesis. It is thought that there are three reasons why actin mutations are likely to be at very low frequencies in human populations: 1. actin is a ubiquitously expressed protein, 2. it is a highly conserved protein with many binding partners, so mutations in a large fraction of actin residues appear to cause a severe phenotype in humans and other organisms and 3. most actin mutations are dominant and given the usually severe effects, are not passed on to offspring. Thus familial actin mutants are likely to be relatively mild dominant alleles or recessive. Severe dominant alleles are likely to be de novo mutations. In the case of cytoplasmic actin, five ACT1G disease-causing mutant alleles are known so far and no disease-causing ACTB alleles have yet been described.&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;&#039;&#039;References&#039;&#039;&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
{{reflist}}&lt;br /&gt;
&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 18573073&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 8489492&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;Alberts, B., Johnson, A., Lewis, J., Raff, M., Roberts, K., &amp;amp; Walter, P. (2002). Molecular biology of the cell. (3 ed.). New York: Garland Science.&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 1388079&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 20672362&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 2673365&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 2395459&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 2395461&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 8970724 &amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 2395459&amp;lt;/ref&amp;gt; &lt;br /&gt;
&amp;lt;ref&amp;gt;Boron, W., &amp;amp; Boulpaep, E. (2008). Medical physiology. (2 ed., pp. 14-20). Saunders Elsevier. Retrieved from http://books.google.com/books/about/Medical_Physiology_E_Book.html?id=HlMJRw08ihgC&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;Remedios, C., &amp;amp; Chhabra, D. (2008). Actin-binding proteins and diseases. (8 ed., pp. 16-18). New York: Springer.&amp;lt;/ref&amp;gt;&lt;/div&gt;</summary>
		<author><name>Brittany Smith</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_471&amp;diff=1384364</id>
		<title>Sandbox Reserved 471</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_471&amp;diff=1384364"/>
		<updated>2012-05-02T14:26:43Z</updated>

		<summary type="html">&lt;p&gt;Brittany Smith: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;Structure load=&#039;3hbt&#039; size=&#039;500&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;Globular actin (G-actin) in its native conformation&#039; scene=&#039;Insert optional scene name here&#039; /&amp;gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Sandbox_Reserved_Robert_B_Rose_1}}&lt;br /&gt;
&amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
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&#039;&#039;&#039;&#039;&#039;Introduction&#039;&#039;&#039;&#039;&#039;&lt;br /&gt;
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Actin is a spherical 43 kilo-Dalton protein that is found in many cell types. It belongs to the class of proteins known as motor proteins. Motor proteins function in the movement of substances across a substrate by utilizing ATP as an energy source. It is one of the most highly conserved proteins differing by no more than 20% in species ranging from yeast to humans. (&amp;quot;Mediation, Modulation and Consequences of Membrane-Cytoskeleton Interactions&amp;quot;.) In an alignment of the 81 unique actin protein sequences, scientists found that 17.4% of positions in the consensus sequence are invariant in all actins, 35.6 % of positions are invariant or have a difference in only one of the 81 actins, and 40.4% of positions are invariant or have what are considered conservative changes (Review Article Molecular genetics of actin function)   &lt;br /&gt;
Actin is the monomeric subunit of microfilaments, one of the three key components of the cytoskeleton and thin filaments, which is part of the contractile unit in muscle cells. The cytoskeleton is a three-dimensional complex of filamentous protein that creates the shape and structure of cells, as well as fills in the gaps between organelles. This is what provides the cells with motility. There are three main proteins that make up the cytoskeleton. They are microfilaments, intermediate filaments and microtubules.  (http://www.bms.ed.ac.uk/research/others/smaciver/lectures/Cs1.htm&lt;br /&gt;
An Introduction to the Cytoskeleton. CS1) Actin exists in two forms, the monomeric, globular form (G-actin) and the polymeric, filamentous form (F-actin). (Conformational Dynamics of Actin: Effectors and Implications for Biological Function)In vertebrates there are three main groups of actin isoforms which include alpha, beta, and gamma. These isotypes (α, β and γ), show &amp;gt;90% amino-acid homology between isotypes and &amp;gt;98% homology within members of a particular isotypic group. (http://www.cytoskeleton.com/actin?gclid=CNyRpoPC3a8CFeUEQAodTFkoCg)  The alpha actins, found in muscle tissues, are a major constituent of the contractile apparatus. The beta and gamma actins coexist in most cell types as components of the cytoskeleton, and as mediators of internal cell motility.&lt;br /&gt;
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&#039;&#039;&#039;&#039;&#039;History&#039;&#039;&#039;&#039;&#039;&lt;br /&gt;
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In 1942, Bruno Ferenc Straub isolated actin as a water soluble component of muscle acetone powder. He found that at increased ionic strength the G-actin molecules would come together to form the F-actin filament. Actin was later found in non-muscle cells and its structure was seen through the use of immunofluorescence microscopy.  The next major accomplishment came with the discovery of the amino acid sequence. This allowed researchers to locate chemical and enzymatic alterations and to study how they affected the properties of the molecule. The high conservation of actin’s structure throughout various species was discovered through comparative sequence analysis. In 1950, Straub reported that actin contained bound ATP and that during the polymerization of the monomers into microfilaments, the ATP was hydrolyzed to ADP and inorganic phosphate. (Straub FB, Feuer G (1989). &amp;quot;Adenosinetriphosphate. The functional group of actin. 1950&amp;quot;. Biochim. Biophys. Acta 1000: 180–95.PMID 2673365.) His discovery led to his suggestion that ATP-bound actin transforming into ADP-bound actin was what created muscle contractions. In the early 1980’s the principles of actin polymerization were exposed and the first actin-binding proteins (ABPs) were characterized according to their in vivo and in vitro functions. In 1990, the crystal structure of G-actin was solved by Kabsch. (Kabsch W, Mannherz HG, Suck D, Pai EF, Holmes KC (September 1990). &amp;quot;Atomic structure of the actin:DNase I complex&amp;quot;. Nature 347 (6288): 37–44. doi:10.1038/347037a0. PMID 2395459.) In this same year a model of F-actin was suggested by Holmes et al. The model was created by fitting a helix of G-actin structures according to low-resolution fiber diffraction data from the F-actin. ( Holmes KC, Popp D, Gebhard W, Kabsch W (September 1990). &amp;quot;Atomic model of the actin filament&amp;quot;. Nature 347 (6288): 44–9.doi:10.1038/347044a0. PMID 2395461.) Further advances in cryoelectron microscopy allowed scientists to find the binding sites for myosin and tropomyosin. A combination of X-ray crystallography with fiber diffraction led to an atomic model of F-actin. (Structure and Function of Actin by Wolfgang Kabsch) After some debate actin also became generally accepted as an important structural and functional component of the cell nucleus (Conformational Dynamics of Actin: Effectors and Implications for Biological Function) Since this pioneering work by Straub, interest in actin has increased tremendously and so has the realization of how complex its structure is.&lt;br /&gt;
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&#039;&#039;&#039;&#039;&#039;Structure&#039;&#039;&#039;&#039;&#039;&lt;br /&gt;
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[[Image:Actin Image.gif]]&lt;br /&gt;
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Actin exists in both its monomeric (globular, G-actin) and polymeric (filamentous or F-actin) form. The actin monomer is approximately pear shaped. Actin is composed of 376 residues that are folded into two large domains, each comprised of two subdomains. Its secondary structure is 41% helical (22 helices; 153 residues) and 20% beta sheet (20 strands; 77 residues). (PDB) The actin filament is a double-stranded, right-handed helix with a half-pitch of 37 nm and a one-start left-handed genetic helix with a rise of 2.75 nm per monomer. The width of the filament is within the range of 7–10 nm. (Conformational Dynamics of Actin: Effectors and Implications for Biological Function) The large domains are organized to form a hinged molecule with a deep cleft. Subdomains 1 and 3 are structurally related, whereas subdomains 2 and 4 can be viewed as large insertions into subdomains 1 and 3, respectively. There is moderately little contact between the two major domains of actin; the polypeptide chain passes twice between these domains at the loop centered at residue Lys336 and at the linker helix Gln137-Ser145, which functions as the hinge axis between the domains. As a result, two clefts are formed between the domains. Within the upper cleft are the cofactors, an adenine nucleotide and a divalent metal ion, usually magnesium. It is thought that the cofactors interact with the domains on either side, increasing their connectivity. The lower cleft between domains 1 and 3 is lined by residues Tyr143, Ala144, Gly146, Thr148, Gly168, Ile341, Ile345, Leu346, Leu349, Thr351, and Met355, which are predominantly hydrophobic. This cleft constitutes the major binding site for most ABPs, and is thus called the targetbinding or hydrophobic cleft. (Actin Structure and Function). Most of the interaction that occur in the subunit are electrostatic in character but there are also hydrophobic interactions.  (Actin Structure and Function)&lt;br /&gt;
Under physiologic conditions, G-actin is transformed to F-actin by ATP. After G-actin is bound to an ATP molecule it can then bind to another ATP bound monomer to form an unstable dimer. It can then add a third ATP bound monomer to create a stable trimer that serves as a basis for building fibrous actin (F-actin). Once the F-actin is formed the ATP can be hydrolyzed, keeping the bound ADP and releasing an inorganic phosphate. The polymer can undergo a process known as treadmilling. This is where the polymer continuously grows at its positive end but disassembles at its negative end. This process requires a permanent source of energy such as ATP (Walter F., PhD. Boron (2003) Medical Physiology: A Cellular And Molecular Approaoch Elsevier/Saunders, pp. 1,300 ISBN:1-4160-2328-3. Page 28) &lt;br /&gt;
Unlike G-actin, F-actin does not form crystalline arrays that can be analyzed by X-ray crystallography. Instead it can be found by using fiber diffraction, electron-microscopy data and mathematical models. The structure can then be refined and remodeled as necessary. (ACTIN: General Principles from Studies in Yeast) The first high-resolution structural model of the actin filament was at a resolution of 8 A ˚ and was proposed by Holmes et al., 1990. Recently, an improved high-resolution F-actin model was created by Oda et al., 2009 with a resolution of 3.3 A ˚ in the radial and 5.6 A ˚ in the equatorial directions. &lt;br /&gt;
Vertebrates express three main actin isoforms, including three α-isoforms of skeletal, cardiac, and smooth muscles and the β- and γ- isoforms expressed in nonmuscle and muscle cells. Actin isoforms are different in a few of its amino acids, with most variations occurring toward the N terminus. Actin also undergoes various forms of posttranslational modifications. For instance, His73 of skeletal muscle α-actin is methylated, the N-terminal methionine and cysteine residues are acetylated and cleaved, and the resulting N-terminal aspartic acid is then re-acetylated. Since the original determination of the crystal structure of G-actin, over 80 structures of actin have been reported.  The majority of these structures have been obtained as complexes with actin-binding proteins (ABPs). (Actin Structure and Function)&lt;br /&gt;
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&#039;&#039;&#039;&#039;&#039;Mechanism of Action&#039;&#039;&#039;&#039;&#039;&lt;br /&gt;
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Polymerization mechanism&lt;br /&gt;
At increased ionic strength, G-actin molecules polymerize into filaments, known as F-actin. F-actin is the main component of the thin filaments in sarcomeres of muscle cells. Muscle sarcomeres use ATP hydrolysis to produce conrtractions by sliding the thin actin filament&lt;br /&gt;
past thick myosin filaments. The entire process is initiated by the slow formation of actin dimmers and trimers. These serve as a base for filament elongation. During elongation more actin monomers associate to than dissociate from either of the two ends, which results in the net growth of both filament ends. The steady-state phase is characterised by a dynamic equilibrium where the length of the actin filaments remains constant. This means while monomers are associating, other monomers are dissociating from the ends. In this dynamic equilibrium a stationery population of free actin monomers is established and is called the critical concentration. The polarity of the ends of the actin filaments play a key role in elongation. The ends of the filament are referred to as &amp;quot;barbed&amp;quot; and &amp;quot;pointed&amp;quot; according to the polarity of the arrowhead-like structure generated on binding with myosin subfragment 1. ) (Structure and Function of Actin by Wolfgang Kabsch) The barbed or plus end binds actin monomers faster than the pointed or minus end. Although its ATPase activity is not crucial for actin polymerisation, actin self-assembly is associated with the ATPase cycle, which powers this treadmilling process (Conformational Dynamics of Actin: Effectors and Implications for Biological Function) After the actin molecule is changed into a filament, the bound ATP is hydrolysed to ADP and inorganic phosphate is realeased. (Structure and Function of Actin by Wolfgang Kabsch) The formation of the F-actin is what stimulates the actin ATPase. The release of the  inorganic phosphate happens more slowly than the formation of the filament so that the growing filament has a cap of ATPactin at its barbed end, while monomers containing ADP and inorganic phosphate accumulate in the rest of the filament. &lt;br /&gt;
[[Image:Filament_formation.png]] [[Image:Treadmilling.gif]]&lt;br /&gt;
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The mature filament contains only ADP-actin. The tendency of actin to polymerize depends upon the affinity of actin monomers for filament ends. There is an actin monomer concentration below which actin will not polymerize known as the Critical Concentration (CC). At monomer concentrations above the CC, the actin will polymerize until the free monomer concentration is equal to the CC. (http://www.ncbi.nlm.nih.gov/books/NBK28299/) It is thought that the strong binding to the ATP is due to the amide proton of a serine 14 amino acid forming hydrogen bonds with the phosphate of ATP, thus stabilizing the nucleotide protein complex. (ACTIN: General Principles from Studies in Yeast). Pure actin can be switched between these states in the test-tube by altering the salt concentration. Actin in low salt conditions is in the G-state, while adding salts causes the actin to polymerise.   (http://www.bms.ed.ac.uk/research/others/smaciver/lectures/Cs1.htm Because actin polymerization is reversible, filaments can depolymerize by the dissociation of actin subunits, allowing actin filaments to be broken down when necessary. Therefore an apparent equilibrium exists between actin monomers and filaments, which is dependent on the concentration of free monomers. At this critical concentration, monomers and filaments are in apparent equilibrium.(Structure and Organization of Actin Filament)&lt;br /&gt;
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&#039;&#039;&#039;&#039;&#039;Function&#039;&#039;&#039;&#039;&#039;&lt;br /&gt;
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Studies of actin have shown that it has many functions within living cells. This range of functions is due to the diverse morphology of its structures and its interactions with actin-binding proteins (ABPs). (Conformational Dynamics of Actin: Effectors and Implications for Biological Function) The diversity in the functional ability of actin proteins is due in part to its interaction with actin-binding proteins. F-actin and G-actin interact with a wide array of proteins. There are over 150 known actin binding proteins (ABPs), which makes up 25% of cellular protein.  (http://www.cytoskeleton.com/actin?gclid=CNyRpoPC3a8CFeUEQAodTFkoCg) Actin has proved to be an important component in the cytoskeleton. The actin cytoskeleton is known as the microfilament and has a multi-purpose role in important cell processes such as maintaining cellular polarity, cell shape, cell motility, adhesion, cytokinesis and endocytosis. (Conformational Dynamics of Actin: Effectors and Implications for Biological Function)  Myosin molecules are a class of actin motors that aid in creating movement by “walking” across actin filaments and contracting muscle tissues. Microfilaments, also known as thin filaments are helical polymers composed of globular actin (G-actin). The polymers are polar and bind to nucleotides such as ATP in order to hydrolyze them. (Walter F., PhD. Boron (2003) Medical Physiology: A Cellular And Molecular Approaoch Elsevier/Saunders, pp. 1,300 ISBN:1-4160-2328-3. Page 28) Actin has no important enzymatic activity, however, it inhibits DNase I and activates the myosin ATPase. Actin filaments activate the Mg2+ ATPase activity and the movement of myosin along actin filaments produces the force for muscle contraction and other cell movements. Motility mechanisms which involve actin are controlled by the interaction in the G or F form with the various ABPs. (Structure and Function of Actin by Wolfgang Kabsch) &lt;br /&gt;
The mechanism is controlled by Ca2+ stimulated myosin light chain kinase. MLCK regulates the coming together of myosin and actin filaments and controls the force with which they contract. Actin-myosin filament networks are found in cells such as neurons and epithelial cells that don’t require movement. These networks provide neurons the ability to stretch cell processes long distances. (Walter F., PhD. Boron (2003) Medical Physiology: A Cellular And Molecular Approaoch Elsevier/Saunders, pp. 1,300 ISBN:1-4160-2328-3. Page 28) In higher order eukaryotic cells, actin filaments and myosin II filaments often come together to perform a function and then disassemble. For example in cytokineses, actin and myosin II filaments organize to form a contractile ring. The ring exists beneath the plasma membrane and during the M-phase of cell division, the ring contracts, pulling the plasma membrane inward and constricts the middle of the cell, leading to an eventual separation into two daughter cells. http://www.ncbi.nlm.nih.gov/books/NBK28299/)  &lt;br /&gt;
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&lt;br /&gt;
&#039;&#039;&#039;&#039;&#039;Medical Implications&#039;&#039;&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
Many of the functions of the cytoskeleton involve cytoskeleton and plasma membrane interactions. Proteins that exist between the two help to control cell shape, define the membrane domains and regulate cell/cell interactions and adhesion. There are at least 15 major protein species involved in the membrane-cytoskeleton of the human red blood cell. A mutation in any of these proteins can lead to cell fragility and cell death. Homologs of the erythrocyte membrane-skeleton can be found in many other cell types, which suggests the significance of these proteins. One of particular importance is the actin associated protein dystrophin. Dystrophin is an important part of the sarcolemmal membrane where it links the membrane to the sides of the actin filament bundles. Mutations in this protein leads to muscular dystrophies such as Duchenne’s disease or Becker muscular dystrophy. A homolog of dystrophin called utropin is thought to play a similar role in non-muscle cells.(http://www.cytoskeleton.com/actin?gclid=CNyRpoPC3a8CFeUEQAodTFkoCg)&lt;br /&gt;
  The genome of many mammals, including humans contains six actin genes, ACTA1, ACTA2, ACTB, ACTC, ACTG1 and ACTG2. Four of these are differentially expressed in cardiac (ACTC), smooth (ACTA2) enteric (ACTG2) and skeletal muscles (ACTA1); two are described as cytoplasmic actin genes (ACTB and ACTG1) and are expressed in all cells.  (Actin-Binding Proteins and Disease ) Actin mutations were not really known until the last 6-10 years. Mutations that have been found to cause human diseases have been found in the ACTC cardiac muscle gene which can cause dilated or hypertrophic cardiomyopathies including congenital fiber-type disproportion (CFTDP). Recently, mutations in ACTG1 have been associated with autosomal dominant deafness. Majority of actin disease mutations have been found to be dominant mutations. This has been the case for actin mutations is the Drosophila flight muscle-specific actin gene ACT88F. Scientists believe the common dominance of actin mutations is because the major functions of actin occur when it is in its F-form, associated with other proteins. The dominant actin mutations that lead to disease are mostly missense mutations. Actin mutations have been found in a variety of species such as yeast, nematodes and flies whose genomes are more accessible to mutagenesis. It is thought that there are three reasons why actin mutations are likely to be at very low frequencies in human populations: 1. actin is a ubiquitously expressed protein, 2. it is a highly conserved protein with many binding partners, so mutations in a large fraction of actin residues appear to cause a severe phenotype in humans and other organisms and 3. most actin mutations are dominant and given the usually severe effects, are not passed on to offspring. Thus familial actin mutants are likely to be relatively mild dominant alleles or recessive. Severe dominant alleles are likely to be de novo mutations. In the case of cytoplasmic actin, five ACT1G disease-causing mutant alleles are known so far and no disease-causing ACTB alleles have yet been described.&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;&#039;&#039;References&#039;&#039;&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
{{reflist}}&lt;br /&gt;
&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 18573073&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 8489492&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;Alberts, B., Johnson, A., Lewis, J., Raff, M., Roberts, K., &amp;amp; Walter, P. (2002). Molecular biology of the cell. (3 ed.). New York: Garland Science.&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 1388079&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 20672362&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 2673365&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 2395459&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 2395461&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 8970724 &amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 2395459&amp;lt;/ref&amp;gt; &lt;br /&gt;
&amp;lt;ref&amp;gt;Boron, W., &amp;amp; Boulpaep, E. (2008). Medical physiology. (2 ed., pp. 14-20). Saunders Elsevier. Retrieved from http://books.google.com/books/about/Medical_Physiology_E_Book.html?id=HlMJRw08ihgC&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;Remedios, C., &amp;amp; Chhabra, D. (2008). Actin-binding proteins and diseases. (8 ed., pp. 16-18). New York: Springer.&amp;lt;/ref&amp;gt;&lt;/div&gt;</summary>
		<author><name>Brittany Smith</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_471&amp;diff=1384360</id>
		<title>Sandbox Reserved 471</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_471&amp;diff=1384360"/>
		<updated>2012-05-02T14:22:40Z</updated>

		<summary type="html">&lt;p&gt;Brittany Smith: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;Structure load=&#039;3hbt&#039; size=&#039;500&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;Globular actin (G-actin) in its native conformation&#039; scene=&#039;Insert optional scene name here&#039; /&amp;gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Sandbox_Reserved_Robert_B_Rose_1}}&lt;br /&gt;
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&#039;&#039;&#039;&#039;&#039;Introduction&#039;&#039;&#039;&#039;&#039;&lt;br /&gt;
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Actin is a spherical 43 kilo-Dalton protein that is found in many cell types. It belongs to the class of proteins known as motor proteins. Motor proteins function in the movement of substances across a substrate by utilizing ATP as an energy source. It is one of the most highly conserved proteins differing by no more than 20% in species ranging from yeast to humans. (&amp;quot;Mediation, Modulation and Consequences of Membrane-Cytoskeleton Interactions&amp;quot;.) In an alignment of the 81 unique actin protein sequences, scientists found that 17.4% of positions in the consensus sequence are invariant in all actins, 35.6 % of positions are invariant or have a difference in only one of the 81 actins, and 40.4% of positions are invariant or have what are considered conservative changes (Review Article Molecular genetics of actin function)   &lt;br /&gt;
Actin is the monomeric subunit of microfilaments, one of the three key components of the cytoskeleton and thin filaments, which is part of the contractile unit in muscle cells. The cytoskeleton is a three-dimensional complex of filamentous protein that creates the shape and structure of cells, as well as fills in the gaps between organelles. This is what provides the cells with motility. There are three main proteins that make up the cytoskeleton. They are microfilaments, intermediate filaments and microtubules.  (http://www.bms.ed.ac.uk/research/others/smaciver/lectures/Cs1.htm&lt;br /&gt;
An Introduction to the Cytoskeleton. CS1) Actin exists in two forms, the monomeric, globular form (G-actin) and the polymeric, filamentous form (F-actin). (Conformational Dynamics of Actin: Effectors and Implications for Biological Function)In vertebrates there are three main groups of actin isoforms which include alpha, beta, and gamma. These isotypes (α, β and γ), show &amp;gt;90% amino-acid homology between isotypes and &amp;gt;98% homology within members of a particular isotypic group. (http://www.cytoskeleton.com/actin?gclid=CNyRpoPC3a8CFeUEQAodTFkoCg)  The alpha actins, found in muscle tissues, are a major constituent of the contractile apparatus. The beta and gamma actins coexist in most cell types as components of the cytoskeleton, and as mediators of internal cell motility.&lt;br /&gt;
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&#039;&#039;&#039;&#039;&#039;History&#039;&#039;&#039;&#039;&#039;&lt;br /&gt;
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In 1942, Bruno Ferenc Straub isolated actin as a water soluble component of muscle acetone powder. He found that at increased ionic strength the G-actin molecules would come together to form the F-actin filament. Actin was later found in non-muscle cells and its structure was seen through the use of immunofluorescence microscopy.  The next major accomplishment came with the discovery of the amino acid sequence. This allowed researchers to locate chemical and enzymatic alterations and to study how they affected the properties of the molecule. The high conservation of actin’s structure throughout various species was discovered through comparative sequence analysis. In 1950, Straub reported that actin contained bound ATP and that during the polymerization of the monomers into microfilaments, the ATP was hydrolyzed to ADP and inorganic phosphate. (Straub FB, Feuer G (1989). &amp;quot;Adenosinetriphosphate. The functional group of actin. 1950&amp;quot;. Biochim. Biophys. Acta 1000: 180–95.PMID 2673365.) His discovery led to his suggestion that ATP-bound actin transforming into ADP-bound actin was what created muscle contractions. In the early 1980’s the principles of actin polymerization were exposed and the first actin-binding proteins (ABPs) were characterized according to their in vivo and in vitro functions. In 1990, the crystal structure of G-actin was solved by Kabsch. (Kabsch W, Mannherz HG, Suck D, Pai EF, Holmes KC (September 1990). &amp;quot;Atomic structure of the actin:DNase I complex&amp;quot;. Nature 347 (6288): 37–44. doi:10.1038/347037a0. PMID 2395459.) In this same year a model of F-actin was suggested by Holmes et al. The model was created by fitting a helix of G-actin structures according to low-resolution fiber diffraction data from the F-actin. ( Holmes KC, Popp D, Gebhard W, Kabsch W (September 1990). &amp;quot;Atomic model of the actin filament&amp;quot;. Nature 347 (6288): 44–9.doi:10.1038/347044a0. PMID 2395461.) Further advances in cryoelectron microscopy allowed scientists to find the binding sites for myosin and tropomyosin. A combination of X-ray crystallography with fiber diffraction led to an atomic model of F-actin. (Structure and Function of Actin by Wolfgang Kabsch) After some debate actin also became generally accepted as an important structural and functional component of the cell nucleus (Conformational Dynamics of Actin: Effectors and Implications for Biological Function) Since this pioneering work by Straub, interest in actin has increased tremendously and so has the realization of how complex its structure is.&lt;br /&gt;
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&#039;&#039;&#039;&#039;&#039;Structure&#039;&#039;&#039;&#039;&#039;&lt;br /&gt;
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[[Image:Actin Image.gif]]&lt;br /&gt;
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Actin exists in both its monomeric (globular, G-actin) and polymeric (filamentous or F-actin) form. The actin monomer is approximately pear shaped. Actin is composed of 376 residues that are folded into two large domains, each comprised of two subdomains. Its secondary structure is 41% helical (22 helices; 153 residues) and 20% beta sheet (20 strands; 77 residues). (PDB) The actin filament is a double-stranded, right-handed helix with a half-pitch of 37 nm and a one-start left-handed genetic helix with a rise of 2.75 nm per monomer. The width of the filament is within the range of 7–10 nm. (Conformational Dynamics of Actin: Effectors and Implications for Biological Function) The large domains are organized to form a hinged molecule with a deep cleft. Subdomains 1 and 3 are structurally related, whereas subdomains 2 and 4 can be viewed as large insertions into subdomains 1 and 3, respectively. There is moderately little contact between the two major domains of actin; the polypeptide chain passes twice between these domains at the loop centered at residue Lys336 and at the linker helix Gln137-Ser145, which functions as the hinge axis between the domains. As a result, two clefts are formed between the domains. Within the upper cleft are the cofactors, an adenine nucleotide and a divalent metal ion, usually magnesium. It is thought that the cofactors interact with the domains on either side, increasing their connectivity. The lower cleft between domains 1 and 3 is lined by residues Tyr143, Ala144, Gly146, Thr148, Gly168, Ile341, Ile345, Leu346, Leu349, Thr351, and Met355, which are predominantly hydrophobic. This cleft constitutes the major binding site for most ABPs, and is thus called the targetbinding or hydrophobic cleft. (Actin Structure and Function). Most of the interaction that occur in the subunit are electrostatic in character but there are also hydrophobic interactions.  (Actin Structure and Function)&lt;br /&gt;
Under physiologic conditions, G-actin is transformed to F-actin by ATP. After G-actin is bound to an ATP molecule it can then bind to another ATP bound monomer to form an unstable dimer. It can then add a third ATP bound monomer to create a stable trimer that serves as a basis for building fibrous actin (F-actin). Once the F-actin is formed the ATP can be hydrolyzed, keeping the bound ADP and releasing an inorganic phosphate. The polymer can undergo a process known as treadmilling. This is where the polymer continuously grows at its positive end but disassembles at its negative end. This process requires a permanent source of energy such as ATP (Walter F., PhD. Boron (2003) Medical Physiology: A Cellular And Molecular Approaoch Elsevier/Saunders, pp. 1,300 ISBN:1-4160-2328-3. Page 28) &lt;br /&gt;
Unlike G-actin, F-actin does not form crystalline arrays that can be analyzed by X-ray crystallography. Instead it can be found by using fiber diffraction, electron-microscopy data and mathematical models. The structure can then be refined and remodeled as necessary. (ACTIN: General Principles from Studies in Yeast) The first high-resolution structural model of the actin filament was at a resolution of 8 A ˚ and was proposed by Holmes et al., 1990. Recently, an improved high-resolution F-actin model was created by Oda et al., 2009 with a resolution of 3.3 A ˚ in the radial and 5.6 A ˚ in the equatorial directions. &lt;br /&gt;
Vertebrates express three main actin isoforms, including three α-isoforms of skeletal, cardiac, and smooth muscles and the β- and γ- isoforms expressed in nonmuscle and muscle cells. Actin isoforms are different in a few of its amino acids, with most variations occurring toward the N terminus. Actin also undergoes various forms of posttranslational modifications. For instance, His73 of skeletal muscle α-actin is methylated, the N-terminal methionine and cysteine residues are acetylated and cleaved, and the resulting N-terminal aspartic acid is then re-acetylated. Since the original determination of the crystal structure of G-actin, over 80 structures of actin have been reported.  The majority of these structures have been obtained as complexes with actin-binding proteins (ABPs). (Actin Structure and Function)&lt;br /&gt;
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&#039;&#039;&#039;&#039;&#039;Mechanism of Action&#039;&#039;&#039;&#039;&#039;&lt;br /&gt;
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Polymerization mechanism&lt;br /&gt;
At increased ionic strength, G-actin molecules polymerize into filaments, known as F-actin. F-actin is the main component of the thin filaments in sarcomeres of muscle cells. Muscle sarcomeres use ATP hydrolysis to produce conrtractions by sliding the thin actin filament&lt;br /&gt;
past thick myosin filaments. The entire process is initiated by the slow formation of actin dimmers and trimers. These serve as a base for filament elongation. During elongation more actin monomers associate to than dissociate from either of the two ends, which results in the net growth of both filament ends. The steady-state phase is characterised by a dynamic equilibrium where the length of the actin filaments remains constant. This means while monomers are associating, other monomers are dissociating from the ends. In this dynamic equilibrium a stationery population of free actin monomers is established and is called the critical concentration. The polarity of the ends of the actin filaments play a key role in elongation. The ends of the filament are referred to as &amp;quot;barbed&amp;quot; and &amp;quot;pointed&amp;quot; according to the polarity of the arrowhead-like structure generated on binding with myosin subfragment 1. ) (Structure and Function of Actin by Wolfgang Kabsch) The barbed or plus end binds actin monomers faster than the pointed or minus end. Although its ATPase activity is not crucial for actin polymerisation, actin self-assembly is associated with the ATPase cycle, which powers this treadmilling process (Conformational Dynamics of Actin: Effectors and Implications for Biological Function) After the actin molecule is changed into a filament, the bound ATP is hydrolysed to ADP and inorganic phosphate is realeased. (Structure and Function of Actin by Wolfgang Kabsch) The formation of the F-actin is what stimulates the actin ATPase. The release of the  inorganic phosphate happens more slowly than the formation of the filament so that the growing filament has a cap of ATPactin at its barbed end, while monomers containing ADP and inorganic phosphate accumulate in the rest of the filament. &lt;br /&gt;
[[Image:Filament_formation.png]] [[Image:Treadmilling.gif]]&lt;br /&gt;
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The mature filament contains only ADP-actin. The tendency of actin to polymerize depends upon the affinity of actin monomers for filament ends. There is an actin monomer concentration below which actin will not polymerize known as the Critical Concentration (CC). At monomer concentrations above the CC, the actin will polymerize until the free monomer concentration is equal to the CC. (http://www.ncbi.nlm.nih.gov/books/NBK28299/) It is thought that the strong binding to the ATP is due to the amide proton of a serine 14 amino acid forming hydrogen bonds with the phosphate of ATP, thus stabilizing the nucleotide protein complex. (ACTIN: General Principles from Studies in Yeast). Pure actin can be switched between these states in the test-tube by altering the salt concentration. Actin in low salt conditions is in the G-state, while adding salts causes the actin to polymerise.   (http://www.bms.ed.ac.uk/research/others/smaciver/lectures/Cs1.htm Because actin polymerization is reversible, filaments can depolymerize by the dissociation of actin subunits, allowing actin filaments to be broken down when necessary. Therefore an apparent equilibrium exists between actin monomers and filaments, which is dependent on the concentration of free monomers. At this critical concentration, monomers and filaments are in apparent equilibrium.(Structure and Organization of Actin Filament)&lt;br /&gt;
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&#039;&#039;&#039;&#039;&#039;Function&#039;&#039;&#039;&#039;&#039;&lt;br /&gt;
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Studies of actin have shown that it has many functions within living cells. This range of functions is due to the diverse morphology of its structures and its interactions with actin-binding proteins (ABPs). (Conformational Dynamics of Actin: Effectors and Implications for Biological Function) The diversity in the functional ability of actin proteins is due in part to its interaction with actin-binding proteins. F-actin and G-actin interact with a wide array of proteins. There are over 150 known actin binding proteins (ABPs), which makes up 25% of cellular protein.  (http://www.cytoskeleton.com/actin?gclid=CNyRpoPC3a8CFeUEQAodTFkoCg) Actin has proved to be an important component in the cytoskeleton. The actin cytoskeleton is known as the microfilament and has a multi-purpose role in important cell processes such as maintaining cellular polarity, cell shape, cell motility, adhesion, cytokinesis and endocytosis. (Conformational Dynamics of Actin: Effectors and Implications for Biological Function)  Myosin molecules are a class of actin motors that aid in creating movement by “walking” across actin filaments and contracting muscle tissues. Microfilaments, also known as thin filaments are helical polymers composed of globular actin (G-actin). The polymers are polar and bind to nucleotides such as ATP in order to hydrolyze them. (Walter F., PhD. Boron (2003) Medical Physiology: A Cellular And Molecular Approaoch Elsevier/Saunders, pp. 1,300 ISBN:1-4160-2328-3. Page 28) Actin has no important enzymatic activity, however, it inhibits DNase I and activates the myosin ATPase. Actin filaments activate the Mg2+ ATPase activity and the movement of myosin along actin filaments produces the force for muscle contraction and other cell movements. Motility mechanisms which involve actin are controlled by the interaction in the G or F form with the various ABPs. (Structure and Function of Actin by Wolfgang Kabsch) &lt;br /&gt;
The mechanism is controlled by Ca2+ stimulated myosin light chain kinase. MLCK regulates the coming together of myosin and actin filaments and controls the force with which they contract. Actin-myosin filament networks are found in cells such as neurons and epithelial cells that don’t require movement. These networks provide neurons the ability to stretch cell processes long distances. (Walter F., PhD. Boron (2003) Medical Physiology: A Cellular And Molecular Approaoch Elsevier/Saunders, pp. 1,300 ISBN:1-4160-2328-3. Page 28) In higher order eukaryotic cells, actin filaments and myosin II filaments often come together to perform a function and then disassemble. For example in cytokineses, actin and myosin II filaments organize to form a contractile ring. The ring exists beneath the plasma membrane and during the M-phase of cell division, the ring contracts, pulling the plasma membrane inward and constricts the middle of the cell, leading to an eventual separation into two daughter cells. http://www.ncbi.nlm.nih.gov/books/NBK28299/)  &lt;br /&gt;
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&#039;&#039;&#039;&#039;&#039;Medical Implications&#039;&#039;&#039;&#039;&#039;&lt;br /&gt;
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Many of the functions of the cytoskeleton involve cytoskeleton and plasma membrane interactions. Proteins that exist between the two help to control cell shape, define the membrane domains and regulate cell/cell interactions and adhesion. There are at least 15 major protein species involved in the membrane-cytoskeleton of the human red blood cell. A mutation in any of these proteins can lead to cell fragility and cell death. Homologs of the erythrocyte membrane-skeleton can be found in many other cell types, which suggests the significance of these proteins. One of particular importance is the actin associated protein dystrophin. Dystrophin is an important part of the sarcolemmal membrane where it links the membrane to the sides of the actin filament bundles. Mutations in this protein leads to muscular dystrophies such as Duchenne’s disease or Becker muscular dystrophy. A homolog of dystrophin called utropin is thought to play a similar role in non-muscle cells.(http://www.cytoskeleton.com/actin?gclid=CNyRpoPC3a8CFeUEQAodTFkoCg)&lt;br /&gt;
  The genome of many mammals, including humans contains six actin genes, ACTA1, ACTA2, ACTB, ACTC, ACTG1 and ACTG2. Four of these are differentially expressed in cardiac (ACTC), smooth (ACTA2) enteric (ACTG2) and skeletal muscles (ACTA1); two are described as cytoplasmic actin genes (ACTB and ACTG1) and are expressed in all cells.  (Actin-Binding Proteins and Disease ) Actin mutations were not really known until the last 6-10 years. Mutations that have been found to cause human diseases have been found in the ACTC cardiac muscle gene which can cause dilated or hypertrophic cardiomyopathies including congenital fiber-type disproportion (CFTDP). Recently, mutations in ACTG1 have been associated with autosomal dominant deafness. Majority of actin disease mutations have been found to be dominant mutations. This has been the case for actin mutations is the Drosophila flight muscle-specific actin gene ACT88F. Scientists believe the common dominance of actin mutations is because the major functions of actin occur when it is in its F-form, associated with other proteins. The dominant actin mutations that lead to disease are mostly missense mutations. Actin mutations have been found in a variety of species such as yeast, nematodes and flies whose genomes are more accessible to mutagenesis. It is thought that there are three reasons why actin mutations are likely to be at very low frequencies in human populations: 1. actin is a ubiquitously expressed protein, 2. it is a highly conserved protein with many binding partners, so mutations in a large fraction of actin residues appear to cause a severe phenotype in humans and other organisms and 3. most actin mutations are dominant and given the usually severe effects, are not passed on to offspring. Thus familial actin mutants are likely to be relatively mild dominant alleles or recessive. Severe dominant alleles are likely to be de novo mutations. In the case of cytoplasmic actin, five ACT1G disease-causing mutant alleles are known so far and no disease-causing ACTB alleles have yet been described.&lt;br /&gt;
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&#039;&#039;&#039;&#039;&#039;References&#039;&#039;&#039;&#039;&#039;&lt;br /&gt;
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{{reflist}}&lt;br /&gt;
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&amp;lt;ref&amp;gt;PMID: 18573073&amp;lt;ref/&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 8489492&amp;lt;ref/&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;Alberts, B., Johnson, A., Lewis, J., Raff, M., Roberts, K., &amp;amp; Walter, P. (2002). Molecular biology of the cell. (3 ed.). New York: Garland Science.&amp;lt;ref/&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 1388079&amp;lt;ref/&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 20672362&amp;lt;ref/&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 2673365&amp;lt;ref/&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 2395459&amp;lt;ref/&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 2395461&amp;lt;ref/&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 8970724 &amp;lt;ref/&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 2395459&amp;lt;ref/&amp;gt; &lt;br /&gt;
&amp;lt;ref&amp;gt;Boron, W., &amp;amp; Boulpaep, E. (2008). Medical physiology. (2 ed., pp. 14-20). Saunders Elsevier. Retrieved from http://books.google.com/books/about/Medical_Physiology_E_Book.html?id=HlMJRw08ihgC&amp;lt;ref/&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;Remedios, C., &amp;amp; Chhabra, D. (2008). Actin-binding proteins and diseases. (8 ed., pp. 16-18). New York: Springer.&amp;lt;ref/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Brittany Smith</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_471&amp;diff=1384357</id>
		<title>Sandbox Reserved 471</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_471&amp;diff=1384357"/>
		<updated>2012-05-02T14:21:17Z</updated>

		<summary type="html">&lt;p&gt;Brittany Smith: &lt;/p&gt;
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&lt;div&gt;&amp;lt;Structure load=&#039;3hbt&#039; size=&#039;500&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;Globular actin (G-actin) in its native conformation&#039; scene=&#039;Insert optional scene name here&#039; /&amp;gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Sandbox_Reserved_Robert_B_Rose_1}}&lt;br /&gt;
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&#039;&#039;&#039;&#039;&#039;Introduction&#039;&#039;&#039;&#039;&#039;&lt;br /&gt;
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Actin is a spherical 43 kilo-Dalton protein that is found in many cell types. It belongs to the class of proteins known as motor proteins. Motor proteins function in the movement of substances across a substrate by utilizing ATP as an energy source. It is one of the most highly conserved proteins differing by no more than 20% in species ranging from yeast to humans. (&amp;quot;Mediation, Modulation and Consequences of Membrane-Cytoskeleton Interactions&amp;quot;.) In an alignment of the 81 unique actin protein sequences, scientists found that 17.4% of positions in the consensus sequence are invariant in all actins, 35.6 % of positions are invariant or have a difference in only one of the 81 actins, and 40.4% of positions are invariant or have what are considered conservative changes (Review Article Molecular genetics of actin function)   &lt;br /&gt;
Actin is the monomeric subunit of microfilaments, one of the three key components of the cytoskeleton and thin filaments, which is part of the contractile unit in muscle cells. The cytoskeleton is a three-dimensional complex of filamentous protein that creates the shape and structure of cells, as well as fills in the gaps between organelles. This is what provides the cells with motility. There are three main proteins that make up the cytoskeleton. They are microfilaments, intermediate filaments and microtubules.  (http://www.bms.ed.ac.uk/research/others/smaciver/lectures/Cs1.htm&lt;br /&gt;
An Introduction to the Cytoskeleton. CS1) Actin exists in two forms, the monomeric, globular form (G-actin) and the polymeric, filamentous form (F-actin). (Conformational Dynamics of Actin: Effectors and Implications for Biological Function)In vertebrates there are three main groups of actin isoforms which include alpha, beta, and gamma. These isotypes (α, β and γ), show &amp;gt;90% amino-acid homology between isotypes and &amp;gt;98% homology within members of a particular isotypic group. (http://www.cytoskeleton.com/actin?gclid=CNyRpoPC3a8CFeUEQAodTFkoCg)  The alpha actins, found in muscle tissues, are a major constituent of the contractile apparatus. The beta and gamma actins coexist in most cell types as components of the cytoskeleton, and as mediators of internal cell motility.&lt;br /&gt;
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&#039;&#039;&#039;&#039;&#039;History&#039;&#039;&#039;&#039;&#039;&lt;br /&gt;
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In 1942, Bruno Ferenc Straub isolated actin as a water soluble component of muscle acetone powder. He found that at increased ionic strength the G-actin molecules would come together to form the F-actin filament. Actin was later found in non-muscle cells and its structure was seen through the use of immunofluorescence microscopy.  The next major accomplishment came with the discovery of the amino acid sequence. This allowed researchers to locate chemical and enzymatic alterations and to study how they affected the properties of the molecule. The high conservation of actin’s structure throughout various species was discovered through comparative sequence analysis. In 1950, Straub reported that actin contained bound ATP and that during the polymerization of the monomers into microfilaments, the ATP was hydrolyzed to ADP and inorganic phosphate. (Straub FB, Feuer G (1989). &amp;quot;Adenosinetriphosphate. The functional group of actin. 1950&amp;quot;. Biochim. Biophys. Acta 1000: 180–95.PMID 2673365.) His discovery led to his suggestion that ATP-bound actin transforming into ADP-bound actin was what created muscle contractions. In the early 1980’s the principles of actin polymerization were exposed and the first actin-binding proteins (ABPs) were characterized according to their in vivo and in vitro functions. In 1990, the crystal structure of G-actin was solved by Kabsch. (Kabsch W, Mannherz HG, Suck D, Pai EF, Holmes KC (September 1990). &amp;quot;Atomic structure of the actin:DNase I complex&amp;quot;. Nature 347 (6288): 37–44. doi:10.1038/347037a0. PMID 2395459.) In this same year a model of F-actin was suggested by Holmes et al. The model was created by fitting a helix of G-actin structures according to low-resolution fiber diffraction data from the F-actin. ( Holmes KC, Popp D, Gebhard W, Kabsch W (September 1990). &amp;quot;Atomic model of the actin filament&amp;quot;. Nature 347 (6288): 44–9.doi:10.1038/347044a0. PMID 2395461.) Further advances in cryoelectron microscopy allowed scientists to find the binding sites for myosin and tropomyosin. A combination of X-ray crystallography with fiber diffraction led to an atomic model of F-actin. (Structure and Function of Actin by Wolfgang Kabsch) After some debate actin also became generally accepted as an important structural and functional component of the cell nucleus (Conformational Dynamics of Actin: Effectors and Implications for Biological Function) Since this pioneering work by Straub, interest in actin has increased tremendously and so has the realization of how complex its structure is.&lt;br /&gt;
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&#039;&#039;&#039;&#039;&#039;Structure&#039;&#039;&#039;&#039;&#039;&lt;br /&gt;
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[[Image:Actin Image.gif]]&lt;br /&gt;
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Actin exists in both its monomeric (globular, G-actin) and polymeric (filamentous or F-actin) form. The actin monomer is approximately pear shaped. Actin is composed of 376 residues that are folded into two large domains, each comprised of two subdomains. Its secondary structure is 41% helical (22 helices; 153 residues) and 20% beta sheet (20 strands; 77 residues). (PDB) The actin filament is a double-stranded, right-handed helix with a half-pitch of 37 nm and a one-start left-handed genetic helix with a rise of 2.75 nm per monomer. The width of the filament is within the range of 7–10 nm. (Conformational Dynamics of Actin: Effectors and Implications for Biological Function) The large domains are organized to form a hinged molecule with a deep cleft. Subdomains 1 and 3 are structurally related, whereas subdomains 2 and 4 can be viewed as large insertions into subdomains 1 and 3, respectively. There is moderately little contact between the two major domains of actin; the polypeptide chain passes twice between these domains at the loop centered at residue Lys336 and at the linker helix Gln137-Ser145, which functions as the hinge axis between the domains. As a result, two clefts are formed between the domains. Within the upper cleft are the cofactors, an adenine nucleotide and a divalent metal ion, usually magnesium. It is thought that the cofactors interact with the domains on either side, increasing their connectivity. The lower cleft between domains 1 and 3 is lined by residues Tyr143, Ala144, Gly146, Thr148, Gly168, Ile341, Ile345, Leu346, Leu349, Thr351, and Met355, which are predominantly hydrophobic. This cleft constitutes the major binding site for most ABPs, and is thus called the targetbinding or hydrophobic cleft. (Actin Structure and Function). Most of the interaction that occur in the subunit are electrostatic in character but there are also hydrophobic interactions.  (Actin Structure and Function)&lt;br /&gt;
Under physiologic conditions, G-actin is transformed to F-actin by ATP. After G-actin is bound to an ATP molecule it can then bind to another ATP bound monomer to form an unstable dimer. It can then add a third ATP bound monomer to create a stable trimer that serves as a basis for building fibrous actin (F-actin). Once the F-actin is formed the ATP can be hydrolyzed, keeping the bound ADP and releasing an inorganic phosphate. The polymer can undergo a process known as treadmilling. This is where the polymer continuously grows at its positive end but disassembles at its negative end. This process requires a permanent source of energy such as ATP (Walter F., PhD. Boron (2003) Medical Physiology: A Cellular And Molecular Approaoch Elsevier/Saunders, pp. 1,300 ISBN:1-4160-2328-3. Page 28) &lt;br /&gt;
Unlike G-actin, F-actin does not form crystalline arrays that can be analyzed by X-ray crystallography. Instead it can be found by using fiber diffraction, electron-microscopy data and mathematical models. The structure can then be refined and remodeled as necessary. (ACTIN: General Principles from Studies in Yeast) The first high-resolution structural model of the actin filament was at a resolution of 8 A ˚ and was proposed by Holmes et al., 1990. Recently, an improved high-resolution F-actin model was created by Oda et al., 2009 with a resolution of 3.3 A ˚ in the radial and 5.6 A ˚ in the equatorial directions. &lt;br /&gt;
Vertebrates express three main actin isoforms, including three α-isoforms of skeletal, cardiac, and smooth muscles and the β- and γ- isoforms expressed in nonmuscle and muscle cells. Actin isoforms are different in a few of its amino acids, with most variations occurring toward the N terminus. Actin also undergoes various forms of posttranslational modifications. For instance, His73 of skeletal muscle α-actin is methylated, the N-terminal methionine and cysteine residues are acetylated and cleaved, and the resulting N-terminal aspartic acid is then re-acetylated. Since the original determination of the crystal structure of G-actin, over 80 structures of actin have been reported.  The majority of these structures have been obtained as complexes with actin-binding proteins (ABPs). (Actin Structure and Function)&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;&#039;&#039;Mechanism of Action&#039;&#039;&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
Polymerization mechanism&lt;br /&gt;
At increased ionic strength, G-actin molecules polymerize into filaments, known as F-actin. F-actin is the main component of the thin filaments in sarcomeres of muscle cells. Muscle sarcomeres use ATP hydrolysis to produce conrtractions by sliding the thin actin filament&lt;br /&gt;
past thick myosin filaments. The entire process is initiated by the slow formation of actin dimmers and trimers. These serve as a base for filament elongation. During elongation more actin monomers associate to than dissociate from either of the two ends, which results in the net growth of both filament ends. The steady-state phase is characterised by a dynamic equilibrium where the length of the actin filaments remains constant. This means while monomers are associating, other monomers are dissociating from the ends. In this dynamic equilibrium a stationery population of free actin monomers is established and is called the critical concentration. The polarity of the ends of the actin filaments play a key role in elongation. The ends of the filament are referred to as &amp;quot;barbed&amp;quot; and &amp;quot;pointed&amp;quot; according to the polarity of the arrowhead-like structure generated on binding with myosin subfragment 1. ) (Structure and Function of Actin by Wolfgang Kabsch) The barbed or plus end binds actin monomers faster than the pointed or minus end. Although its ATPase activity is not crucial for actin polymerisation, actin self-assembly is associated with the ATPase cycle, which powers this treadmilling process (Conformational Dynamics of Actin: Effectors and Implications for Biological Function) After the actin molecule is changed into a filament, the bound ATP is hydrolysed to ADP and inorganic phosphate is realeased. (Structure and Function of Actin by Wolfgang Kabsch) The formation of the F-actin is what stimulates the actin ATPase. The release of the  inorganic phosphate happens more slowly than the formation of the filament so that the growing filament has a cap of ATPactin at its barbed end, while monomers containing ADP and inorganic phosphate accumulate in the rest of the filament. &lt;br /&gt;
[[Image:Filament_formation.png]] [[Image:Treadmilling.gif]]&lt;br /&gt;
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The mature filament contains only ADP-actin. The tendency of actin to polymerize depends upon the affinity of actin monomers for filament ends. There is an actin monomer concentration below which actin will not polymerize known as the Critical Concentration (CC). At monomer concentrations above the CC, the actin will polymerize until the free monomer concentration is equal to the CC. (http://www.ncbi.nlm.nih.gov/books/NBK28299/) It is thought that the strong binding to the ATP is due to the amide proton of a serine 14 amino acid forming hydrogen bonds with the phosphate of ATP, thus stabilizing the nucleotide protein complex. (ACTIN: General Principles from Studies in Yeast). Pure actin can be switched between these states in the test-tube by altering the salt concentration. Actin in low salt conditions is in the G-state, while adding salts causes the actin to polymerise.   (http://www.bms.ed.ac.uk/research/others/smaciver/lectures/Cs1.htm Because actin polymerization is reversible, filaments can depolymerize by the dissociation of actin subunits, allowing actin filaments to be broken down when necessary. Therefore an apparent equilibrium exists between actin monomers and filaments, which is dependent on the concentration of free monomers. At this critical concentration, monomers and filaments are in apparent equilibrium.(Structure and Organization of Actin Filament)&lt;br /&gt;
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&#039;&#039;&#039;&#039;&#039;Function&#039;&#039;&#039;&#039;&#039;&lt;br /&gt;
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Studies of actin have shown that it has many functions within living cells. This range of functions is due to the diverse morphology of its structures and its interactions with actin-binding proteins (ABPs). (Conformational Dynamics of Actin: Effectors and Implications for Biological Function) The diversity in the functional ability of actin proteins is due in part to its interaction with actin-binding proteins. F-actin and G-actin interact with a wide array of proteins. There are over 150 known actin binding proteins (ABPs), which makes up 25% of cellular protein.  (http://www.cytoskeleton.com/actin?gclid=CNyRpoPC3a8CFeUEQAodTFkoCg) Actin has proved to be an important component in the cytoskeleton. The actin cytoskeleton is known as the microfilament and has a multi-purpose role in important cell processes such as maintaining cellular polarity, cell shape, cell motility, adhesion, cytokinesis and endocytosis. (Conformational Dynamics of Actin: Effectors and Implications for Biological Function)  Myosin molecules are a class of actin motors that aid in creating movement by “walking” across actin filaments and contracting muscle tissues. Microfilaments, also known as thin filaments are helical polymers composed of globular actin (G-actin). The polymers are polar and bind to nucleotides such as ATP in order to hydrolyze them. (Walter F., PhD. Boron (2003) Medical Physiology: A Cellular And Molecular Approaoch Elsevier/Saunders, pp. 1,300 ISBN:1-4160-2328-3. Page 28) Actin has no important enzymatic activity, however, it inhibits DNase I and activates the myosin ATPase. Actin filaments activate the Mg2+ ATPase activity and the movement of myosin along actin filaments produces the force for muscle contraction and other cell movements. Motility mechanisms which involve actin are controlled by the interaction in the G or F form with the various ABPs. (Structure and Function of Actin by Wolfgang Kabsch) &lt;br /&gt;
The mechanism is controlled by Ca2+ stimulated myosin light chain kinase. MLCK regulates the coming together of myosin and actin filaments and controls the force with which they contract. Actin-myosin filament networks are found in cells such as neurons and epithelial cells that don’t require movement. These networks provide neurons the ability to stretch cell processes long distances. (Walter F., PhD. Boron (2003) Medical Physiology: A Cellular And Molecular Approaoch Elsevier/Saunders, pp. 1,300 ISBN:1-4160-2328-3. Page 28) In higher order eukaryotic cells, actin filaments and myosin II filaments often come together to perform a function and then disassemble. For example in cytokineses, actin and myosin II filaments organize to form a contractile ring. The ring exists beneath the plasma membrane and during the M-phase of cell division, the ring contracts, pulling the plasma membrane inward and constricts the middle of the cell, leading to an eventual separation into two daughter cells. http://www.ncbi.nlm.nih.gov/books/NBK28299/)  &lt;br /&gt;
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&#039;&#039;&#039;&#039;&#039;Medical Implications&#039;&#039;&#039;&#039;&#039;&lt;br /&gt;
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Many of the functions of the cytoskeleton involve cytoskeleton and plasma membrane interactions. Proteins that exist between the two help to control cell shape, define the membrane domains and regulate cell/cell interactions and adhesion. There are at least 15 major protein species involved in the membrane-cytoskeleton of the human red blood cell. A mutation in any of these proteins can lead to cell fragility and cell death. Homologs of the erythrocyte membrane-skeleton can be found in many other cell types, which suggests the significance of these proteins. One of particular importance is the actin associated protein dystrophin. Dystrophin is an important part of the sarcolemmal membrane where it links the membrane to the sides of the actin filament bundles. Mutations in this protein leads to muscular dystrophies such as Duchenne’s disease or Becker muscular dystrophy. A homolog of dystrophin called utropin is thought to play a similar role in non-muscle cells.(http://www.cytoskeleton.com/actin?gclid=CNyRpoPC3a8CFeUEQAodTFkoCg)&lt;br /&gt;
  The genome of many mammals, including humans contains six actin genes, ACTA1, ACTA2, ACTB, ACTC, ACTG1 and ACTG2. Four of these are differentially expressed in cardiac (ACTC), smooth (ACTA2) enteric (ACTG2) and skeletal muscles (ACTA1); two are described as cytoplasmic actin genes (ACTB and ACTG1) and are expressed in all cells.  (Actin-Binding Proteins and Disease ) Actin mutations were not really known until the last 6-10 years. Mutations that have been found to cause human diseases have been found in the ACTC cardiac muscle gene which can cause dilated or hypertrophic cardiomyopathies including congenital fiber-type disproportion (CFTDP). Recently, mutations in ACTG1 have been associated with autosomal dominant deafness. Majority of actin disease mutations have been found to be dominant mutations. This has been the case for actin mutations is the Drosophila flight muscle-specific actin gene ACT88F. Scientists believe the common dominance of actin mutations is because the major functions of actin occur when it is in its F-form, associated with other proteins. The dominant actin mutations that lead to disease are mostly missense mutations. Actin mutations have been found in a variety of species such as yeast, nematodes and flies whose genomes are more accessible to mutagenesis. It is thought that there are three reasons why actin mutations are likely to be at very low frequencies in human populations: 1. actin is a ubiquitously expressed protein, 2. it is a highly conserved protein with many binding partners, so mutations in a large fraction of actin residues appear to cause a severe phenotype in humans and other organisms and 3. most actin mutations are dominant and given the usually severe effects, are not passed on to offspring. Thus familial actin mutants are likely to be relatively mild dominant alleles or recessive. Severe dominant alleles are likely to be de novo mutations. In the case of cytoplasmic actin, five ACT1G disease-causing mutant alleles are known so far and no disease-causing ACTB alleles have yet been described.&lt;br /&gt;
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&#039;&#039;&#039;&#039;&#039;References&#039;&#039;&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
{{reflist}}&lt;br /&gt;
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&amp;lt;references/&amp;gt;&amp;lt;ref&amp;gt;PMID: 18573073&amp;lt;ref/&amp;gt;&lt;br /&gt;
&amp;lt;references/&amp;gt;&amp;lt;ref&amp;gt;PMID: 8489492&amp;lt;ref/&amp;gt;&lt;br /&gt;
&amp;lt;references/&amp;gt;&amp;lt;ref&amp;gt;Alberts, B., Johnson, A., Lewis, J., Raff, M., Roberts, K., &amp;amp; Walter, P. (2002). Molecular biology of the cell. (3 ed.). New York: Garland Science.&amp;lt;ref/&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 1388079&amp;lt;ref/&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 20672362&amp;lt;ref/&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 2673365&amp;lt;ref/&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 2395459&amp;lt;ref/&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 2395461&amp;lt;ref/&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 8970724 &amp;lt;ref/&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 2395459&amp;lt;ref/&amp;gt; &lt;br /&gt;
&amp;lt;ref&amp;gt;Boron, W., &amp;amp; Boulpaep, E. (2008). Medical physiology. (2 ed., pp. 14-20). Saunders Elsevier. Retrieved from http://books.google.com/books/about/Medical_Physiology_E_Book.html?id=HlMJRw08ihgC&amp;lt;ref/&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;Remedios, C., &amp;amp; Chhabra, D. (2008). Actin-binding proteins and diseases. (8 ed., pp. 16-18). New York: Springer.&amp;lt;ref/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Brittany Smith</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_471&amp;diff=1384355</id>
		<title>Sandbox Reserved 471</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_471&amp;diff=1384355"/>
		<updated>2012-05-02T14:19:25Z</updated>

		<summary type="html">&lt;p&gt;Brittany Smith: &lt;/p&gt;
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&lt;div&gt;&amp;lt;Structure load=&#039;3hbt&#039; size=&#039;500&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;Globular actin (G-actin) in its native conformation&#039; scene=&#039;Insert optional scene name here&#039; /&amp;gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
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&#039;&#039;&#039;&#039;&#039;Introduction&#039;&#039;&#039;&#039;&#039;&lt;br /&gt;
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Actin is a spherical 43 kilo-Dalton protein that is found in many cell types. It belongs to the class of proteins known as motor proteins. Motor proteins function in the movement of substances across a substrate by utilizing ATP as an energy source. It is one of the most highly conserved proteins differing by no more than 20% in species ranging from yeast to humans. (&amp;quot;Mediation, Modulation and Consequences of Membrane-Cytoskeleton Interactions&amp;quot;.) In an alignment of the 81 unique actin protein sequences, scientists found that 17.4% of positions in the consensus sequence are invariant in all actins, 35.6 % of positions are invariant or have a difference in only one of the 81 actins, and 40.4% of positions are invariant or have what are considered conservative changes (Review Article Molecular genetics of actin function)   &lt;br /&gt;
Actin is the monomeric subunit of microfilaments, one of the three key components of the cytoskeleton and thin filaments, which is part of the contractile unit in muscle cells. The cytoskeleton is a three-dimensional complex of filamentous protein that creates the shape and structure of cells, as well as fills in the gaps between organelles. This is what provides the cells with motility. There are three main proteins that make up the cytoskeleton. They are microfilaments, intermediate filaments and microtubules.  (http://www.bms.ed.ac.uk/research/others/smaciver/lectures/Cs1.htm&lt;br /&gt;
An Introduction to the Cytoskeleton. CS1) Actin exists in two forms, the monomeric, globular form (G-actin) and the polymeric, filamentous form (F-actin). (Conformational Dynamics of Actin: Effectors and Implications for Biological Function)In vertebrates there are three main groups of actin isoforms which include alpha, beta, and gamma. These isotypes (α, β and γ), show &amp;gt;90% amino-acid homology between isotypes and &amp;gt;98% homology within members of a particular isotypic group. (http://www.cytoskeleton.com/actin?gclid=CNyRpoPC3a8CFeUEQAodTFkoCg)  The alpha actins, found in muscle tissues, are a major constituent of the contractile apparatus. The beta and gamma actins coexist in most cell types as components of the cytoskeleton, and as mediators of internal cell motility.&lt;br /&gt;
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&#039;&#039;&#039;&#039;&#039;History&#039;&#039;&#039;&#039;&#039;&lt;br /&gt;
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In 1942, Bruno Ferenc Straub isolated actin as a water soluble component of muscle acetone powder. He found that at increased ionic strength the G-actin molecules would come together to form the F-actin filament. Actin was later found in non-muscle cells and its structure was seen through the use of immunofluorescence microscopy.  The next major accomplishment came with the discovery of the amino acid sequence. This allowed researchers to locate chemical and enzymatic alterations and to study how they affected the properties of the molecule. The high conservation of actin’s structure throughout various species was discovered through comparative sequence analysis. In 1950, Straub reported that actin contained bound ATP and that during the polymerization of the monomers into microfilaments, the ATP was hydrolyzed to ADP and inorganic phosphate. (Straub FB, Feuer G (1989). &amp;quot;Adenosinetriphosphate. The functional group of actin. 1950&amp;quot;. Biochim. Biophys. Acta 1000: 180–95.PMID 2673365.) His discovery led to his suggestion that ATP-bound actin transforming into ADP-bound actin was what created muscle contractions. In the early 1980’s the principles of actin polymerization were exposed and the first actin-binding proteins (ABPs) were characterized according to their in vivo and in vitro functions. In 1990, the crystal structure of G-actin was solved by Kabsch. (Kabsch W, Mannherz HG, Suck D, Pai EF, Holmes KC (September 1990). &amp;quot;Atomic structure of the actin:DNase I complex&amp;quot;. Nature 347 (6288): 37–44. doi:10.1038/347037a0. PMID 2395459.) In this same year a model of F-actin was suggested by Holmes et al. The model was created by fitting a helix of G-actin structures according to low-resolution fiber diffraction data from the F-actin. ( Holmes KC, Popp D, Gebhard W, Kabsch W (September 1990). &amp;quot;Atomic model of the actin filament&amp;quot;. Nature 347 (6288): 44–9.doi:10.1038/347044a0. PMID 2395461.) Further advances in cryoelectron microscopy allowed scientists to find the binding sites for myosin and tropomyosin. A combination of X-ray crystallography with fiber diffraction led to an atomic model of F-actin. (Structure and Function of Actin by Wolfgang Kabsch) After some debate actin also became generally accepted as an important structural and functional component of the cell nucleus (Conformational Dynamics of Actin: Effectors and Implications for Biological Function) Since this pioneering work by Straub, interest in actin has increased tremendously and so has the realization of how complex its structure is.&lt;br /&gt;
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&#039;&#039;&#039;&#039;&#039;Structure&#039;&#039;&#039;&#039;&#039;&lt;br /&gt;
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[[Image:Actin Image.gif]]&lt;br /&gt;
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Actin exists in both its monomeric (globular, G-actin) and polymeric (filamentous or F-actin) form. The actin monomer is approximately pear shaped. Actin is composed of 376 residues that are folded into two large domains, each comprised of two subdomains. Its secondary structure is 41% helical (22 helices; 153 residues) and 20% beta sheet (20 strands; 77 residues). (PDB) The actin filament is a double-stranded, right-handed helix with a half-pitch of 37 nm and a one-start left-handed genetic helix with a rise of 2.75 nm per monomer. The width of the filament is within the range of 7–10 nm. (Conformational Dynamics of Actin: Effectors and Implications for Biological Function) The large domains are organized to form a hinged molecule with a deep cleft. Subdomains 1 and 3 are structurally related, whereas subdomains 2 and 4 can be viewed as large insertions into subdomains 1 and 3, respectively. There is moderately little contact between the two major domains of actin; the polypeptide chain passes twice between these domains at the loop centered at residue Lys336 and at the linker helix Gln137-Ser145, which functions as the hinge axis between the domains. As a result, two clefts are formed between the domains. Within the upper cleft are the cofactors, an adenine nucleotide and a divalent metal ion, usually magnesium. It is thought that the cofactors interact with the domains on either side, increasing their connectivity. The lower cleft between domains 1 and 3 is lined by residues Tyr143, Ala144, Gly146, Thr148, Gly168, Ile341, Ile345, Leu346, Leu349, Thr351, and Met355, which are predominantly hydrophobic. This cleft constitutes the major binding site for most ABPs, and is thus called the targetbinding or hydrophobic cleft. (Actin Structure and Function). Most of the interaction that occur in the subunit are electrostatic in character but there are also hydrophobic interactions.  (Actin Structure and Function)&lt;br /&gt;
Under physiologic conditions, G-actin is transformed to F-actin by ATP. After G-actin is bound to an ATP molecule it can then bind to another ATP bound monomer to form an unstable dimer. It can then add a third ATP bound monomer to create a stable trimer that serves as a basis for building fibrous actin (F-actin). Once the F-actin is formed the ATP can be hydrolyzed, keeping the bound ADP and releasing an inorganic phosphate. The polymer can undergo a process known as treadmilling. This is where the polymer continuously grows at its positive end but disassembles at its negative end. This process requires a permanent source of energy such as ATP (Walter F., PhD. Boron (2003) Medical Physiology: A Cellular And Molecular Approaoch Elsevier/Saunders, pp. 1,300 ISBN:1-4160-2328-3. Page 28) &lt;br /&gt;
Unlike G-actin, F-actin does not form crystalline arrays that can be analyzed by X-ray crystallography. Instead it can be found by using fiber diffraction, electron-microscopy data and mathematical models. The structure can then be refined and remodeled as necessary. (ACTIN: General Principles from Studies in Yeast) The first high-resolution structural model of the actin filament was at a resolution of 8 A ˚ and was proposed by Holmes et al., 1990. Recently, an improved high-resolution F-actin model was created by Oda et al., 2009 with a resolution of 3.3 A ˚ in the radial and 5.6 A ˚ in the equatorial directions. &lt;br /&gt;
Vertebrates express three main actin isoforms, including three α-isoforms of skeletal, cardiac, and smooth muscles and the β- and γ- isoforms expressed in nonmuscle and muscle cells. Actin isoforms are different in a few of its amino acids, with most variations occurring toward the N terminus. Actin also undergoes various forms of posttranslational modifications. For instance, His73 of skeletal muscle α-actin is methylated, the N-terminal methionine and cysteine residues are acetylated and cleaved, and the resulting N-terminal aspartic acid is then re-acetylated. Since the original determination of the crystal structure of G-actin, over 80 structures of actin have been reported.  The majority of these structures have been obtained as complexes with actin-binding proteins (ABPs). (Actin Structure and Function)&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;&#039;&#039;Mechanism of Action&#039;&#039;&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
Polymerization mechanism&lt;br /&gt;
At increased ionic strength, G-actin molecules polymerize into filaments, known as F-actin. F-actin is the main component of the thin filaments in sarcomeres of muscle cells. Muscle sarcomeres use ATP hydrolysis to produce conrtractions by sliding the thin actin filament&lt;br /&gt;
past thick myosin filaments. The entire process is initiated by the slow formation of actin dimmers and trimers. These serve as a base for filament elongation. During elongation more actin monomers associate to than dissociate from either of the two ends, which results in the net growth of both filament ends. The steady-state phase is characterised by a dynamic equilibrium where the length of the actin filaments remains constant. This means while monomers are associating, other monomers are dissociating from the ends. In this dynamic equilibrium a stationery population of free actin monomers is established and is called the critical concentration. The polarity of the ends of the actin filaments play a key role in elongation. The ends of the filament are referred to as &amp;quot;barbed&amp;quot; and &amp;quot;pointed&amp;quot; according to the polarity of the arrowhead-like structure generated on binding with myosin subfragment 1. ) (Structure and Function of Actin by Wolfgang Kabsch) The barbed or plus end binds actin monomers faster than the pointed or minus end. Although its ATPase activity is not crucial for actin polymerisation, actin self-assembly is associated with the ATPase cycle, which powers this treadmilling process (Conformational Dynamics of Actin: Effectors and Implications for Biological Function) After the actin molecule is changed into a filament, the bound ATP is hydrolysed to ADP and inorganic phosphate is realeased. (Structure and Function of Actin by Wolfgang Kabsch) The formation of the F-actin is what stimulates the actin ATPase. The release of the  inorganic phosphate happens more slowly than the formation of the filament so that the growing filament has a cap of ATPactin at its barbed end, while monomers containing ADP and inorganic phosphate accumulate in the rest of the filament. &lt;br /&gt;
[[Image:Filament_formation.png]] [[Image:Treadmilling.gif]]&lt;br /&gt;
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The mature filament contains only ADP-actin. The tendency of actin to polymerize depends upon the affinity of actin monomers for filament ends. There is an actin monomer concentration below which actin will not polymerize known as the Critical Concentration (CC). At monomer concentrations above the CC, the actin will polymerize until the free monomer concentration is equal to the CC. (http://www.ncbi.nlm.nih.gov/books/NBK28299/) It is thought that the strong binding to the ATP is due to the amide proton of a serine 14 amino acid forming hydrogen bonds with the phosphate of ATP, thus stabilizing the nucleotide protein complex. (ACTIN: General Principles from Studies in Yeast). Pure actin can be switched between these states in the test-tube by altering the salt concentration. Actin in low salt conditions is in the G-state, while adding salts causes the actin to polymerise.   (http://www.bms.ed.ac.uk/research/others/smaciver/lectures/Cs1.htm Because actin polymerization is reversible, filaments can depolymerize by the dissociation of actin subunits, allowing actin filaments to be broken down when necessary. Therefore an apparent equilibrium exists between actin monomers and filaments, which is dependent on the concentration of free monomers. At this critical concentration, monomers and filaments are in apparent equilibrium.(Structure and Organization of Actin Filament)&lt;br /&gt;
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&#039;&#039;&#039;&#039;&#039;Function&#039;&#039;&#039;&#039;&#039;&lt;br /&gt;
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Studies of actin have shown that it has many functions within living cells. This range of functions is due to the diverse morphology of its structures and its interactions with actin-binding proteins (ABPs). (Conformational Dynamics of Actin: Effectors and Implications for Biological Function) The diversity in the functional ability of actin proteins is due in part to its interaction with actin-binding proteins. F-actin and G-actin interact with a wide array of proteins. There are over 150 known actin binding proteins (ABPs), which makes up 25% of cellular protein.  (http://www.cytoskeleton.com/actin?gclid=CNyRpoPC3a8CFeUEQAodTFkoCg) Actin has proved to be an important component in the cytoskeleton. The actin cytoskeleton is known as the microfilament and has a multi-purpose role in important cell processes such as maintaining cellular polarity, cell shape, cell motility, adhesion, cytokinesis and endocytosis. (Conformational Dynamics of Actin: Effectors and Implications for Biological Function)  Myosin molecules are a class of actin motors that aid in creating movement by “walking” across actin filaments and contracting muscle tissues. Microfilaments, also known as thin filaments are helical polymers composed of globular actin (G-actin). The polymers are polar and bind to nucleotides such as ATP in order to hydrolyze them. (Walter F., PhD. Boron (2003) Medical Physiology: A Cellular And Molecular Approaoch Elsevier/Saunders, pp. 1,300 ISBN:1-4160-2328-3. Page 28) Actin has no important enzymatic activity, however, it inhibits DNase I and activates the myosin ATPase. Actin filaments activate the Mg2+ ATPase activity and the movement of myosin along actin filaments produces the force for muscle contraction and other cell movements. Motility mechanisms which involve actin are controlled by the interaction in the G or F form with the various ABPs. (Structure and Function of Actin by Wolfgang Kabsch) &lt;br /&gt;
The mechanism is controlled by Ca2+ stimulated myosin light chain kinase. MLCK regulates the coming together of myosin and actin filaments and controls the force with which they contract. Actin-myosin filament networks are found in cells such as neurons and epithelial cells that don’t require movement. These networks provide neurons the ability to stretch cell processes long distances. (Walter F., PhD. Boron (2003) Medical Physiology: A Cellular And Molecular Approaoch Elsevier/Saunders, pp. 1,300 ISBN:1-4160-2328-3. Page 28) In higher order eukaryotic cells, actin filaments and myosin II filaments often come together to perform a function and then disassemble. For example in cytokineses, actin and myosin II filaments organize to form a contractile ring. The ring exists beneath the plasma membrane and during the M-phase of cell division, the ring contracts, pulling the plasma membrane inward and constricts the middle of the cell, leading to an eventual separation into two daughter cells. http://www.ncbi.nlm.nih.gov/books/NBK28299/)  &lt;br /&gt;
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&#039;&#039;&#039;&#039;&#039;Medical Implications&#039;&#039;&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
Many of the functions of the cytoskeleton involve cytoskeleton and plasma membrane interactions. Proteins that exist between the two help to control cell shape, define the membrane domains and regulate cell/cell interactions and adhesion. There are at least 15 major protein species involved in the membrane-cytoskeleton of the human red blood cell. A mutation in any of these proteins can lead to cell fragility and cell death. Homologs of the erythrocyte membrane-skeleton can be found in many other cell types, which suggests the significance of these proteins. One of particular importance is the actin associated protein dystrophin. Dystrophin is an important part of the sarcolemmal membrane where it links the membrane to the sides of the actin filament bundles. Mutations in this protein leads to muscular dystrophies such as Duchenne’s disease or Becker muscular dystrophy. A homolog of dystrophin called utropin is thought to play a similar role in non-muscle cells.(http://www.cytoskeleton.com/actin?gclid=CNyRpoPC3a8CFeUEQAodTFkoCg)&lt;br /&gt;
  The genome of many mammals, including humans contains six actin genes, ACTA1, ACTA2, ACTB, ACTC, ACTG1 and ACTG2. Four of these are differentially expressed in cardiac (ACTC), smooth (ACTA2) enteric (ACTG2) and skeletal muscles (ACTA1); two are described as cytoplasmic actin genes (ACTB and ACTG1) and are expressed in all cells.  (Actin-Binding Proteins and Disease ) Actin mutations were not really known until the last 6-10 years. Mutations that have been found to cause human diseases have been found in the ACTC cardiac muscle gene which can cause dilated or hypertrophic cardiomyopathies including congenital fiber-type disproportion (CFTDP). Recently, mutations in ACTG1 have been associated with autosomal dominant deafness. Majority of actin disease mutations have been found to be dominant mutations. This has been the case for actin mutations is the Drosophila flight muscle-specific actin gene ACT88F. Scientists believe the common dominance of actin mutations is because the major functions of actin occur when it is in its F-form, associated with other proteins. The dominant actin mutations that lead to disease are mostly missense mutations. Actin mutations have been found in a variety of species such as yeast, nematodes and flies whose genomes are more accessible to mutagenesis. It is thought that there are three reasons why actin mutations are likely to be at very low frequencies in human populations: 1. actin is a ubiquitously expressed protein, 2. it is a highly conserved protein with many binding partners, so mutations in a large fraction of actin residues appear to cause a severe phenotype in humans and other organisms and 3. most actin mutations are dominant and given the usually severe effects, are not passed on to offspring. Thus familial actin mutants are likely to be relatively mild dominant alleles or recessive. Severe dominant alleles are likely to be de novo mutations. In the case of cytoplasmic actin, five ACT1G disease-causing mutant alleles are known so far and no disease-causing ACTB alleles have yet been described.&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;&#039;&#039;References&#039;&#039;&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;references/&amp;gt;&amp;lt;ref&amp;gt;PMID: 18573073&amp;lt;ref/&amp;gt;&lt;br /&gt;
&amp;lt;references/&amp;gt;&amp;lt;ref&amp;gt;PMID: 8489492&amp;lt;ref/&amp;gt;&lt;br /&gt;
&amp;lt;references/&amp;gt;&amp;lt;ref&amp;gt;Alberts, B., Johnson, A., Lewis, J., Raff, M., Roberts, K., &amp;amp; Walter, P. (2002). Molecular biology of the cell. (3 ed.). New York: Garland Science.&amp;lt;ref/&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 1388079&amp;lt;ref/&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 20672362&amp;lt;ref/&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 2673365&amp;lt;ref/&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 2395459&amp;lt;ref/&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 2395461&amp;lt;ref/&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 8970724 &amp;lt;ref/&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 2395459&amp;lt;ref/&amp;gt; &lt;br /&gt;
&amp;lt;ref&amp;gt;Boron, W., &amp;amp; Boulpaep, E. (2008). Medical physiology. (2 ed., pp. 14-20). Saunders Elsevier. Retrieved from http://books.google.com/books/about/Medical_Physiology_E_Book.html?id=HlMJRw08ihgC&amp;lt;ref/&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;Remedios, C., &amp;amp; Chhabra, D. (2008). Actin-binding proteins and diseases. (8 ed., pp. 16-18). New York: Springer.&amp;lt;ref/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Brittany Smith</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_471&amp;diff=1384352</id>
		<title>Sandbox Reserved 471</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_471&amp;diff=1384352"/>
		<updated>2012-05-02T14:17:50Z</updated>

		<summary type="html">&lt;p&gt;Brittany Smith: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Sandbox_Reserved_Robert_B_Rose_1}}&lt;br /&gt;
&amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;&#039;&#039;Introduction&#039;&#039;&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
Actin is a spherical 43 kilo-Dalton protein that is found in many cell types. It belongs to the class of proteins known as motor proteins. Motor proteins function in the movement of substances across a substrate by utilizing ATP as an energy source. It is one of the most highly conserved proteins differing by no more than 20% in species ranging from yeast to humans. (&amp;quot;Mediation, Modulation and Consequences of Membrane-Cytoskeleton Interactions&amp;quot;.) In an alignment of the 81 unique actin protein sequences, scientists found that 17.4% of positions in the consensus sequence are invariant in all actins, 35.6 % of positions are invariant or have a difference in only one of the 81 actins, and 40.4% of positions are invariant or have what are considered conservative changes (Review Article Molecular genetics of actin function)   &lt;br /&gt;
Actin is the monomeric subunit of microfilaments, one of the three key components of the cytoskeleton and thin filaments, which is part of the contractile unit in muscle cells. The cytoskeleton is a three-dimensional complex of filamentous protein that creates the shape and structure of cells, as well as fills in the gaps between organelles. This is what provides the cells with motility. There are three main proteins that make up the cytoskeleton. They are microfilaments, intermediate filaments and microtubules.  (http://www.bms.ed.ac.uk/research/others/smaciver/lectures/Cs1.htm&lt;br /&gt;
An Introduction to the Cytoskeleton. CS1) Actin exists in two forms, the monomeric, globular form (G-actin) and the polymeric, filamentous form (F-actin). (Conformational Dynamics of Actin: Effectors and Implications for Biological Function)In vertebrates there are three main groups of actin isoforms which include alpha, beta, and gamma. These isotypes (α, β and γ), show &amp;gt;90% amino-acid homology between isotypes and &amp;gt;98% homology within members of a particular isotypic group. (http://www.cytoskeleton.com/actin?gclid=CNyRpoPC3a8CFeUEQAodTFkoCg)  The alpha actins, found in muscle tissues, are a major constituent of the contractile apparatus. The beta and gamma actins coexist in most cell types as components of the cytoskeleton, and as mediators of internal cell motility.&lt;br /&gt;
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&#039;&#039;&#039;&#039;&#039;History&#039;&#039;&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
In 1942, Bruno Ferenc Straub isolated actin as a water soluble component of muscle acetone powder. He found that at increased ionic strength the G-actin molecules would come together to form the F-actin filament. Actin was later found in non-muscle cells and its structure was seen through the use of immunofluorescence microscopy.  The next major accomplishment came with the discovery of the amino acid sequence. This allowed researchers to locate chemical and enzymatic alterations and to study how they affected the properties of the molecule. The high conservation of actin’s structure throughout various species was discovered through comparative sequence analysis. In 1950, Straub reported that actin contained bound ATP and that during the polymerization of the monomers into microfilaments, the ATP was hydrolyzed to ADP and inorganic phosphate. (Straub FB, Feuer G (1989). &amp;quot;Adenosinetriphosphate. The functional group of actin. 1950&amp;quot;. Biochim. Biophys. Acta 1000: 180–95.PMID 2673365.) His discovery led to his suggestion that ATP-bound actin transforming into ADP-bound actin was what created muscle contractions. In the early 1980’s the principles of actin polymerization were exposed and the first actin-binding proteins (ABPs) were characterized according to their in vivo and in vitro functions. In 1990, the crystal structure of G-actin was solved by Kabsch. (Kabsch W, Mannherz HG, Suck D, Pai EF, Holmes KC (September 1990). &amp;quot;Atomic structure of the actin:DNase I complex&amp;quot;. Nature 347 (6288): 37–44. doi:10.1038/347037a0. PMID 2395459.) In this same year a model of F-actin was suggested by Holmes et al. The model was created by fitting a helix of G-actin structures according to low-resolution fiber diffraction data from the F-actin. ( Holmes KC, Popp D, Gebhard W, Kabsch W (September 1990). &amp;quot;Atomic model of the actin filament&amp;quot;. Nature 347 (6288): 44–9.doi:10.1038/347044a0. PMID 2395461.) Further advances in cryoelectron microscopy allowed scientists to find the binding sites for myosin and tropomyosin. A combination of X-ray crystallography with fiber diffraction led to an atomic model of F-actin. (Structure and Function of Actin by Wolfgang Kabsch) After some debate actin also became generally accepted as an important structural and functional component of the cell nucleus (Conformational Dynamics of Actin: Effectors and Implications for Biological Function) Since this pioneering work by Straub, interest in actin has increased tremendously and so has the realization of how complex its structure is.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;Structure load=&#039;3hbt&#039; size=&#039;500&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;Globular actin (G-actin) in its native conformation&#039; scene=&#039;Insert optional scene name here&#039; /&amp;gt;&lt;br /&gt;
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&#039;&#039;&#039;&#039;&#039;Structure&#039;&#039;&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
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[[Image:Actin Image.gif]]&lt;br /&gt;
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Actin exists in both its monomeric (globular, G-actin) and polymeric (filamentous or F-actin) form. The actin monomer is approximately pear shaped. Actin is composed of 376 residues that are folded into two large domains, each comprised of two subdomains. Its secondary structure is 41% helical (22 helices; 153 residues) and 20% beta sheet (20 strands; 77 residues). (PDB) The actin filament is a double-stranded, right-handed helix with a half-pitch of 37 nm and a one-start left-handed genetic helix with a rise of 2.75 nm per monomer. The width of the filament is within the range of 7–10 nm. (Conformational Dynamics of Actin: Effectors and Implications for Biological Function) The large domains are organized to form a hinged molecule with a deep cleft. Subdomains 1 and 3 are structurally related, whereas subdomains 2 and 4 can be viewed as large insertions into subdomains 1 and 3, respectively. There is moderately little contact between the two major domains of actin; the polypeptide chain passes twice between these domains at the loop centered at residue Lys336 and at the linker helix Gln137-Ser145, which functions as the hinge axis between the domains. As a result, two clefts are formed between the domains. Within the upper cleft are the cofactors, an adenine nucleotide and a divalent metal ion, usually magnesium. It is thought that the cofactors interact with the domains on either side, increasing their connectivity. The lower cleft between domains 1 and 3 is lined by residues Tyr143, Ala144, Gly146, Thr148, Gly168, Ile341, Ile345, Leu346, Leu349, Thr351, and Met355, which are predominantly hydrophobic. This cleft constitutes the major binding site for most ABPs, and is thus called the targetbinding or hydrophobic cleft. (Actin Structure and Function). Most of the interaction that occur in the subunit are electrostatic in character but there are also hydrophobic interactions.  (Actin Structure and Function)&lt;br /&gt;
Under physiologic conditions, G-actin is transformed to F-actin by ATP. After G-actin is bound to an ATP molecule it can then bind to another ATP bound monomer to form an unstable dimer. It can then add a third ATP bound monomer to create a stable trimer that serves as a basis for building fibrous actin (F-actin). Once the F-actin is formed the ATP can be hydrolyzed, keeping the bound ADP and releasing an inorganic phosphate. The polymer can undergo a process known as treadmilling. This is where the polymer continuously grows at its positive end but disassembles at its negative end. This process requires a permanent source of energy such as ATP (Walter F., PhD. Boron (2003) Medical Physiology: A Cellular And Molecular Approaoch Elsevier/Saunders, pp. 1,300 ISBN:1-4160-2328-3. Page 28) &lt;br /&gt;
Unlike G-actin, F-actin does not form crystalline arrays that can be analyzed by X-ray crystallography. Instead it can be found by using fiber diffraction, electron-microscopy data and mathematical models. The structure can then be refined and remodeled as necessary. (ACTIN: General Principles from Studies in Yeast) The first high-resolution structural model of the actin filament was at a resolution of 8 A ˚ and was proposed by Holmes et al., 1990. Recently, an improved high-resolution F-actin model was created by Oda et al., 2009 with a resolution of 3.3 A ˚ in the radial and 5.6 A ˚ in the equatorial directions. &lt;br /&gt;
Vertebrates express three main actin isoforms, including three α-isoforms of skeletal, cardiac, and smooth muscles and the β- and γ- isoforms expressed in nonmuscle and muscle cells. Actin isoforms are different in a few of its amino acids, with most variations occurring toward the N terminus. Actin also undergoes various forms of posttranslational modifications. For instance, His73 of skeletal muscle α-actin is methylated, the N-terminal methionine and cysteine residues are acetylated and cleaved, and the resulting N-terminal aspartic acid is then re-acetylated. Since the original determination of the crystal structure of G-actin, over 80 structures of actin have been reported.  The majority of these structures have been obtained as complexes with actin-binding proteins (ABPs). (Actin Structure and Function)&lt;br /&gt;
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&#039;&#039;&#039;&#039;&#039;Mechanism of Action&#039;&#039;&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
Polymerization mechanism&lt;br /&gt;
At increased ionic strength, G-actin molecules polymerize into filaments, known as F-actin. F-actin is the main component of the thin filaments in sarcomeres of muscle cells. Muscle sarcomeres use ATP hydrolysis to produce conrtractions by sliding the thin actin filament&lt;br /&gt;
past thick myosin filaments. The entire process is initiated by the slow formation of actin dimmers and trimers. These serve as a base for filament elongation. During elongation more actin monomers associate to than dissociate from either of the two ends, which results in the net growth of both filament ends. The steady-state phase is characterised by a dynamic equilibrium where the length of the actin filaments remains constant. This means while monomers are associating, other monomers are dissociating from the ends. In this dynamic equilibrium a stationery population of free actin monomers is established and is called the critical concentration. The polarity of the ends of the actin filaments play a key role in elongation. The ends of the filament are referred to as &amp;quot;barbed&amp;quot; and &amp;quot;pointed&amp;quot; according to the polarity of the arrowhead-like structure generated on binding with myosin subfragment 1. ) (Structure and Function of Actin by Wolfgang Kabsch) The barbed or plus end binds actin monomers faster than the pointed or minus end. Although its ATPase activity is not crucial for actin polymerisation, actin self-assembly is associated with the ATPase cycle, which powers this treadmilling process (Conformational Dynamics of Actin: Effectors and Implications for Biological Function) After the actin molecule is changed into a filament, the bound ATP is hydrolysed to ADP and inorganic phosphate is realeased. (Structure and Function of Actin by Wolfgang Kabsch) The formation of the F-actin is what stimulates the actin ATPase. The release of the  inorganic phosphate happens more slowly than the formation of the filament so that the growing filament has a cap of ATPactin at its barbed end, while monomers containing ADP and inorganic phosphate accumulate in the rest of the filament. &lt;br /&gt;
[[Image:Filament_formation.png]] [[Image:Treadmilling.gif]]&lt;br /&gt;
&lt;br /&gt;
The mature filament contains only ADP-actin. The tendency of actin to polymerize depends upon the affinity of actin monomers for filament ends. There is an actin monomer concentration below which actin will not polymerize known as the Critical Concentration (CC). At monomer concentrations above the CC, the actin will polymerize until the free monomer concentration is equal to the CC. (http://www.ncbi.nlm.nih.gov/books/NBK28299/) It is thought that the strong binding to the ATP is due to the amide proton of a serine 14 amino acid forming hydrogen bonds with the phosphate of ATP, thus stabilizing the nucleotide protein complex. (ACTIN: General Principles from Studies in Yeast). Pure actin can be switched between these states in the test-tube by altering the salt concentration. Actin in low salt conditions is in the G-state, while adding salts causes the actin to polymerise.   (http://www.bms.ed.ac.uk/research/others/smaciver/lectures/Cs1.htm Because actin polymerization is reversible, filaments can depolymerize by the dissociation of actin subunits, allowing actin filaments to be broken down when necessary. Therefore an apparent equilibrium exists between actin monomers and filaments, which is dependent on the concentration of free monomers. At this critical concentration, monomers and filaments are in apparent equilibrium.(Structure and Organization of Actin Filament)&lt;br /&gt;
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&#039;&#039;&#039;&#039;&#039;Function&#039;&#039;&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
Studies of actin have shown that it has many functions within living cells. This range of functions is due to the diverse morphology of its structures and its interactions with actin-binding proteins (ABPs). (Conformational Dynamics of Actin: Effectors and Implications for Biological Function) The diversity in the functional ability of actin proteins is due in part to its interaction with actin-binding proteins. F-actin and G-actin interact with a wide array of proteins. There are over 150 known actin binding proteins (ABPs), which makes up 25% of cellular protein.  (http://www.cytoskeleton.com/actin?gclid=CNyRpoPC3a8CFeUEQAodTFkoCg) Actin has proved to be an important component in the cytoskeleton. The actin cytoskeleton is known as the microfilament and has a multi-purpose role in important cell processes such as maintaining cellular polarity, cell shape, cell motility, adhesion, cytokinesis and endocytosis. (Conformational Dynamics of Actin: Effectors and Implications for Biological Function)  Myosin molecules are a class of actin motors that aid in creating movement by “walking” across actin filaments and contracting muscle tissues. Microfilaments, also known as thin filaments are helical polymers composed of globular actin (G-actin). The polymers are polar and bind to nucleotides such as ATP in order to hydrolyze them. (Walter F., PhD. Boron (2003) Medical Physiology: A Cellular And Molecular Approaoch Elsevier/Saunders, pp. 1,300 ISBN:1-4160-2328-3. Page 28) Actin has no important enzymatic activity, however, it inhibits DNase I and activates the myosin ATPase. Actin filaments activate the Mg2+ ATPase activity and the movement of myosin along actin filaments produces the force for muscle contraction and other cell movements. Motility mechanisms which involve actin are controlled by the interaction in the G or F form with the various ABPs. (Structure and Function of Actin by Wolfgang Kabsch) &lt;br /&gt;
The mechanism is controlled by Ca2+ stimulated myosin light chain kinase. MLCK regulates the coming together of myosin and actin filaments and controls the force with which they contract. Actin-myosin filament networks are found in cells such as neurons and epithelial cells that don’t require movement. These networks provide neurons the ability to stretch cell processes long distances. (Walter F., PhD. Boron (2003) Medical Physiology: A Cellular And Molecular Approaoch Elsevier/Saunders, pp. 1,300 ISBN:1-4160-2328-3. Page 28) In higher order eukaryotic cells, actin filaments and myosin II filaments often come together to perform a function and then disassemble. For example in cytokineses, actin and myosin II filaments organize to form a contractile ring. The ring exists beneath the plasma membrane and during the M-phase of cell division, the ring contracts, pulling the plasma membrane inward and constricts the middle of the cell, leading to an eventual separation into two daughter cells. http://www.ncbi.nlm.nih.gov/books/NBK28299/)  &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;&#039;&#039;Medical Implications&#039;&#039;&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
Many of the functions of the cytoskeleton involve cytoskeleton and plasma membrane interactions. Proteins that exist between the two help to control cell shape, define the membrane domains and regulate cell/cell interactions and adhesion. There are at least 15 major protein species involved in the membrane-cytoskeleton of the human red blood cell. A mutation in any of these proteins can lead to cell fragility and cell death. Homologs of the erythrocyte membrane-skeleton can be found in many other cell types, which suggests the significance of these proteins. One of particular importance is the actin associated protein dystrophin. Dystrophin is an important part of the sarcolemmal membrane where it links the membrane to the sides of the actin filament bundles. Mutations in this protein leads to muscular dystrophies such as Duchenne’s disease or Becker muscular dystrophy. A homolog of dystrophin called utropin is thought to play a similar role in non-muscle cells.(http://www.cytoskeleton.com/actin?gclid=CNyRpoPC3a8CFeUEQAodTFkoCg)&lt;br /&gt;
  The genome of many mammals, including humans contains six actin genes, ACTA1, ACTA2, ACTB, ACTC, ACTG1 and ACTG2. Four of these are differentially expressed in cardiac (ACTC), smooth (ACTA2) enteric (ACTG2) and skeletal muscles (ACTA1); two are described as cytoplasmic actin genes (ACTB and ACTG1) and are expressed in all cells.  (Actin-Binding Proteins and Disease ) Actin mutations were not really known until the last 6-10 years. Mutations that have been found to cause human diseases have been found in the ACTC cardiac muscle gene which can cause dilated or hypertrophic cardiomyopathies including congenital fiber-type disproportion (CFTDP). Recently, mutations in ACTG1 have been associated with autosomal dominant deafness. Majority of actin disease mutations have been found to be dominant mutations. This has been the case for actin mutations is the Drosophila flight muscle-specific actin gene ACT88F. Scientists believe the common dominance of actin mutations is because the major functions of actin occur when it is in its F-form, associated with other proteins. The dominant actin mutations that lead to disease are mostly missense mutations. Actin mutations have been found in a variety of species such as yeast, nematodes and flies whose genomes are more accessible to mutagenesis. It is thought that there are three reasons why actin mutations are likely to be at very low frequencies in human populations: 1. actin is a ubiquitously expressed protein, 2. it is a highly conserved protein with many binding partners, so mutations in a large fraction of actin residues appear to cause a severe phenotype in humans and other organisms and 3. most actin mutations are dominant and given the usually severe effects, are not passed on to offspring. Thus familial actin mutants are likely to be relatively mild dominant alleles or recessive. Severe dominant alleles are likely to be de novo mutations. In the case of cytoplasmic actin, five ACT1G disease-causing mutant alleles are known so far and no disease-causing ACTB alleles have yet been described.&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;&#039;&#039;References&#039;&#039;&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;references/&amp;gt;&amp;lt;ref&amp;gt;PMID: 18573073&amp;lt;ref/&amp;gt;&lt;br /&gt;
&amp;lt;references/&amp;gt;&amp;lt;ref&amp;gt;PMID: 8489492&amp;lt;ref/&amp;gt;&lt;br /&gt;
&amp;lt;references/&amp;gt;&amp;lt;ref&amp;gt;Alberts, B., Johnson, A., Lewis, J., Raff, M., Roberts, K., &amp;amp; Walter, P. (2002). Molecular biology of the cell. (3 ed.). New York: Garland Science.&amp;lt;ref/&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 1388079&amp;lt;ref/&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 20672362&amp;lt;ref/&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 2673365&amp;lt;ref/&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 2395459&amp;lt;ref/&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 2395461&amp;lt;ref/&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 8970724 &amp;lt;ref/&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;PMID: 2395459&amp;lt;ref/&amp;gt; &lt;br /&gt;
&amp;lt;ref&amp;gt;Boron, W., &amp;amp; Boulpaep, E. (2008). Medical physiology. (2 ed., pp. 14-20). Saunders Elsevier. Retrieved from http://books.google.com/books/about/Medical_Physiology_E_Book.html?id=HlMJRw08ihgC&amp;lt;ref/&amp;gt;&lt;br /&gt;
&amp;lt;ref&amp;gt;Remedios, C., &amp;amp; Chhabra, D. (2008). Actin-binding proteins and diseases. (8 ed., pp. 16-18). New York: Springer.&amp;lt;ref/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Brittany Smith</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_486&amp;diff=1384348</id>
		<title>Sandbox Reserved 486</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_486&amp;diff=1384348"/>
		<updated>2012-05-02T14:10:49Z</updated>

		<summary type="html">&lt;p&gt;Brittany Smith: /* Mechanism */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Sandbox_Reserved_Robert_B_Rose_1}}&lt;br /&gt;
&amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
= Diphtheria toxin =&lt;br /&gt;
&#039;&#039;&#039;Diphtheria Toxin&#039;&#039;&#039; is an exotoxin produced by the organism [http://en.wikipedia.org/wiki/Corynebacterium_diphtheriae Corynebcterium diphtheria] which has been infected by a [http://en.wikipedia.org/wiki/Bacteriophage bacteriophage] that contains the Diphtheria toxin gene. The toxin is the causative agent of [http://en.wikipedia.org/wiki/Diphtheria diphtheria]. Symptoms for Diphtheria can range from a sore throat with low-grade fever and an adherent pseudomembrane of the tonsils, pharynx, or nose to  infected skin lesions which lack a characteristic appearance.&amp;lt;ref&amp;gt;http://www.cdc.gov/ncidod/dbmd/diseaseinfo/diptheria_t.htm &amp;lt;/ref&amp;gt; The toxin is distributed to distant organs by the circulatory system and may cause paralysis and congestive heart failure.&amp;lt;ref&amp;gt;http://www.ncbi.nlm.nih.gov/books/NBK7971/ &amp;lt;/ref&amp;gt;  The toxin attacks and kills eukaryotic cells by inactivating the [http://en.wikipedia.org/wiki/Elongation_factor Elongation factor] (&#039;&#039;&#039;EF-2&#039;&#039;&#039;) in translation. EF-2 allows for translocation of the peptidyl-tRNA from the A-site to the P-site, which in turn frees the A site for another aminoacyl-tRNA to bind. By inactivating the elongation factor 2 during translation the protein being made cannot be completed and therefore becomes nonfunctional. The toxin is in a &#039;&#039;&#039;class of A-B&#039;&#039;&#039; which includes cholera toxin, &#039;&#039;Escherichia coli&#039;&#039; heat labile enterotoxin, &#039;&#039;Pseudomonas aeruginosa&#039;&#039; exotoxin A, tetanus, botulinum neurotoxins, and Shiga toxin. A-B class is characterized by two functionally distinct components such as component A is the catalytic components while component B does the receptor binding function.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;Structure load=&#039;1mdt&#039; size=&#039;500&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;Diphtheria toxin structure&#039; scene=&#039;Insert optional scene name here&#039; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== History ==&lt;br /&gt;
Scientist have made efforts since at least the 1740&#039;s to find the caustion and cure for &#039;&#039;&#039;diphtheria toxin&#039;&#039;&#039;. It wasn&#039;t until Koch&#039;s devolpment of medical microbiology and [http://en.wikipedia.org/wiki/Koch&#039;s_postulates Koch&#039;s postulates] that it was even possible for progression towards understanding the molecular causes. It was later in Koch&#039;s laboratory that Friedrich Loeffler isolated a bacteria from a patient that died from &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039;. Koch and Friedrich later inoculated 23 guinea pigs with the isolated bacteria and they all died in two to five days. Loeffler had another observation that only the isolated bacteria from the pigs were growing at the site of inoculation. Therefore, he came to the conclusion that the bacteria isolated was the causation of the &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039;. In Pasture institute in Paris, both Emile Roux and Alexandre Yersin were able to isolate the toxin by growing a pure culture of &#039;&#039;Diphtheria bacilli&#039;&#039; and forcing them through a porcelain filter. This allowed to obtain no bacteria and only the toxin. The toxin was injected into laboratory animals and caused the same symptoms of &#039;&#039;Diphtheria bacilli&#039;&#039;. It wasn&#039;t until sixty-five years later that protein crystals were produced and the structure obtained. [http://en.wikipedia.org/wiki/Emil_Adolf_von_Behring Emil von Behring] published a paper with the discovery of diphtheria antitoxin one week after Koch found out the resistance gained by vaccination from &#039;&#039;Diphtheria bacilli&#039;&#039;. This lead to elimination of the disease diphtheria in developing countries.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Von Behring received a Nobel Prize for the antitoxin which later would be known as antibodies against &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039;. The next vaccine made was one mixed of toxin and antitoxin. The antitoxin relieved the harmful effects of the toxin which was the real vaccine. This was later replaced in 1923 with a vaccine of a formaldehyde-treated Diphtheria toxin. Today in developing countries people get routine vaccinations so that diphtheria is unknown.&lt;br /&gt;
&lt;br /&gt;
== Structure ==&lt;br /&gt;
&lt;br /&gt;
Diphtheria toxin is a protein made of 535 amino acids and is 58kDa in weight. The [http://en.wikipedia.org/wiki/Zymogen proenzyme](zymogen) must be cleaved into fragments A &amp;amp; B and reduced in order for the toxicity gene to be turn on. In each fragment there are two &amp;lt;scene name=&#039;Sandbox_Reserved_486/Disulfide_bonds/1&#039;&amp;gt;Disulfide Bonds&amp;lt;/scene&amp;gt;. There are also three domains C,T, and R that have different functions. The first crystal structure of the toxin was obtained in 1992 by x-ray crystallography. However, the structure was a dimer and generated by freezing the protein. The dimer is non-toxic but becomes a toxic monomer at neutral pH by dissociation. The &amp;lt;scene name=&#039;Sandbox_Reserved_486/Secondary_structure/1&#039;&amp;gt;Secondary Structure&amp;lt;/scene&amp;gt; of the molecule is made up of 24 helices, 31 beta sheets, and turns between each of them which adds up to be 535 residue protein. This makes for a mixture of &amp;lt;scene name=&#039;Sandbox_Reserved_486/Hydrophobic_hydrophilic/1&#039;&amp;gt;hydrophilic and hydrophobic areas&amp;lt;/scene&amp;gt; that allow for the seondary structure. The purple portion of the molecule is the polar ares while the gray was the hydrophobic areas. &lt;br /&gt;
&lt;br /&gt;
*&amp;lt;scene name=&#039;Sandbox_Reserved_486/Fragment_a/1&#039;&amp;gt;Fragment A&amp;lt;/scene&amp;gt; is about molecular mass of 21kDa  and is the catalytically active portion of the protein. &lt;br /&gt;
*&amp;lt;scene name=&#039;Sandbox_Reserved_486/Fragment_b/1&#039;&amp;gt;Fragment B&amp;lt;/scene&amp;gt; is about 37kDa and contains the receptor binding &amp;amp; translocation portions of the protein.&lt;br /&gt;
&lt;br /&gt;
The two fragments are then separated into three domains C, T, and R which correspond to three major functions of the toxin.&lt;br /&gt;
&lt;br /&gt;
*In fragment A contains domain C which contains the &amp;lt;scene name=&#039;Sandbox_Reserved_486/Active_site/1&#039;&amp;gt;Active site&amp;lt;/scene&amp;gt; and does the catalysis for the protein. It contains eight β strands and seven α helices.&lt;br /&gt;
&lt;br /&gt;
*The T domain is found in fragment B and is the translocation portion of the protein. The structure is made up of three layers of α helices. The outer layer contains 3 helices that are rich in polar residues that allow for the molecule to maintain the T domain as well as keeping the toxin soluble in neutral pH. &lt;br /&gt;
&lt;br /&gt;
*Another domain in fragment B is domain R which has the &amp;lt;scene name=&#039;Sandbox_Reserved_486/Receptor_binding_site/1&#039;&amp;gt;Receptor binding site&amp;lt;/scene&amp;gt; for the protein. The domain consist mostly of β sheets and changes conformation when interacting with cell membranes. In the R domain both Lsy516 and Phe530 play a role in recognizing receptors on cell surfaces.&lt;br /&gt;
&lt;br /&gt;
In the mechanism for Diphtheria toxin the R Domain binds to &amp;lt;scene name=&#039;Sandbox_Reserved_486/Ligands/2&#039;&amp;gt;ligands&amp;lt;/scene&amp;gt; which are NAD&amp;lt;sup&amp;gt;+&amp;lt;/sup&amp;gt; which can sometimes be switched with ApUp. The molecule ApUp is bound to a cleft on the front side of the C domain. &lt;br /&gt;
&lt;br /&gt;
[[Image:Page41-2.jpg]]&lt;br /&gt;
&lt;br /&gt;
== Mechanism ==&lt;br /&gt;
&lt;br /&gt;
The mechanism begins by the R domain recognizing the target cells by the molecules on the cells surface. The T domain translocates the C domain into the cytosol of the cell. The organism &#039;&#039;Corynebacterium diphtheriae&#039;&#039; first secretes the toxin the loop between the C and T domain has to be nicked in order for the toxicity to be turned on. There is one surface protease named [http://en.wikipedia.org/wiki/Furin furin] that is known to nick the area but it is unclear if any other protein helps the process. &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[Image:Toxin-1.jpg]]  figure 3: Mechanism of inactivation of elongation factor 2 (EF2) by diphtheria toxin &amp;lt;ref&amp;gt;Stephen, J., &amp;amp; Pietrowski, R. (1981). Bacterial toxins. (1 ed., p. 11). Washington: Van Nostrand Reinhold Co. Ltd. &amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Medical Implications &amp;amp; Possible Application ==&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039; is the causative agent of the disease [http://en.wikipedia.org/wiki/Diphtheria Diphtheria]. The lethal dose for humans and other susceptible eukarya is .1μg of toxin per kg of body weight&amp;lt;ref&amp;gt;Oram , D., &amp;amp; Holmes, R. (2006). Diphtheria toxin. (3 ed., pp. 245-252). Burlington, San Diego, London: Academic Press publications.&amp;lt;/ref&amp;gt;  A vaccine has been made and is routinely used in first world countries as a basic immunization. The vaccine is made up of formaldehyde-treated Diphtheria toxin. However, Diphtheria toxin has been used is many other medical applications such as the drug [http://en.wikipedia.org/wiki/Denileukin_diftitox Denileukin diftitox] and cancer suppressors. Denileukin diftitox is a protein that combines &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039; and [http://en.wikipedia.org/wiki/Interleukin-2 Interleukin 2]. In some  Leukemias and Lymphomas cells express Interleukin receptors in which the drug can bind to and release the toxin within the cells.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Another application that &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039; can be used for is a cancer suppressor. In terms of the R domain of the protein which as we know binds to pro-HB-EFG receptors of the surface of cells and is translocated into the cell by endocytosis. Some scientist have made a non-toxic mutant of diphtheria toxin CRM197 which is being used to block the signaling activity of the receptor. In some cancers such as ovarian cancer, pro-HB-EFG is overexpressed and blocking the signal has shown promise in suppressing the effects of pro-HB-EFG on cancer development.&amp;lt;ref&amp;gt;Oram , D., &amp;amp; Holmes, R. (2006). Diphtheria toxin. (3 ed., pp. 245-252). Burlington, San Diego, London: Academic Press publications.&amp;lt;/ref&amp;gt; Another example, is called [http://en.wikipedia.org/wiki/Immunotoxin immunotoxins] which change the R domain to recognize a specific cell surface and kill that cell. This is being tested against different cancer cell types and has been successful.&lt;br /&gt;
&lt;br /&gt;
== References ==&lt;br /&gt;
* Parker, M. (1996). Protein toxin structure. (1 ed., pp. 25-43). Georgetown: R.G. Landes Company.&lt;br /&gt;
&lt;br /&gt;
*Bennett, M., &amp;amp; Eisenberg, D. (2009, febuary 24). The refined structure of monomeric diphtheria toxin at 2.3 angstroms resolution. Retrieved from http://www.pdb.org/pdb/explore/explore.do?&lt;br /&gt;
&lt;br /&gt;
* Stephen, J., &amp;amp; Pietrowski, R. (1981). Bacterial toxins. (1 ed., p. 11). Washington: Van Nostrand Reinhold Co. Ltd.&lt;br /&gt;
&lt;br /&gt;
* Oram , D., &amp;amp; Holmes, R. (2006). Diphtheria toxin. (3 ed., pp. 245-252). Burlington, San Diego, London: Academic Press publications.&lt;br /&gt;
&lt;br /&gt;
* Diphtheria toxin. (2011, November 25). Retrieved from &amp;lt;http://en.wikipedia.org/wiki/Diphtheria_toxin&amp;gt;&lt;br /&gt;
&lt;br /&gt;
* Murphy JR (1996). &amp;quot;Corynebacterium Diphtheriae: Diphtheria Toxin Production&amp;quot;. In Baron S et al.. Medical microbiology (4 ed.). Galveston, Texas: Univ. of Texas Medical Branch. ISBN 0-9631172-1-1.&lt;br /&gt;
&lt;br /&gt;
=== Footnotes ===&lt;br /&gt;
{{reflist}}&lt;/div&gt;</summary>
		<author><name>Brittany Smith</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_486&amp;diff=1384343</id>
		<title>Sandbox Reserved 486</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_486&amp;diff=1384343"/>
		<updated>2012-05-02T14:05:39Z</updated>

		<summary type="html">&lt;p&gt;Brittany Smith: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Sandbox_Reserved_Robert_B_Rose_1}}&lt;br /&gt;
&amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
= Diphtheria toxin =&lt;br /&gt;
&#039;&#039;&#039;Diphtheria Toxin&#039;&#039;&#039; is an exotoxin produced by the organism [http://en.wikipedia.org/wiki/Corynebacterium_diphtheriae Corynebcterium diphtheria] which has been infected by a [http://en.wikipedia.org/wiki/Bacteriophage bacteriophage] that contains the Diphtheria toxin gene. The toxin is the causative agent of [http://en.wikipedia.org/wiki/Diphtheria diphtheria]. Symptoms for Diphtheria can range from a sore throat with low-grade fever and an adherent pseudomembrane of the tonsils, pharynx, or nose to  infected skin lesions which lack a characteristic appearance.&amp;lt;ref&amp;gt;http://www.cdc.gov/ncidod/dbmd/diseaseinfo/diptheria_t.htm &amp;lt;/ref&amp;gt; The toxin is distributed to distant organs by the circulatory system and may cause paralysis and congestive heart failure.&amp;lt;ref&amp;gt;http://www.ncbi.nlm.nih.gov/books/NBK7971/ &amp;lt;/ref&amp;gt;  The toxin attacks and kills eukaryotic cells by inactivating the [http://en.wikipedia.org/wiki/Elongation_factor Elongation factor] (&#039;&#039;&#039;EF-2&#039;&#039;&#039;) in translation. EF-2 allows for translocation of the peptidyl-tRNA from the A-site to the P-site, which in turn frees the A site for another aminoacyl-tRNA to bind. By inactivating the elongation factor 2 during translation the protein being made cannot be completed and therefore becomes nonfunctional. The toxin is in a &#039;&#039;&#039;class of A-B&#039;&#039;&#039; which includes cholera toxin, &#039;&#039;Escherichia coli&#039;&#039; heat labile enterotoxin, &#039;&#039;Pseudomonas aeruginosa&#039;&#039; exotoxin A, tetanus, botulinum neurotoxins, and Shiga toxin. A-B class is characterized by two functionally distinct components such as component A is the catalytic components while component B does the receptor binding function.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;Structure load=&#039;1mdt&#039; size=&#039;500&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;Diphtheria toxin structure&#039; scene=&#039;Insert optional scene name here&#039; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== History ==&lt;br /&gt;
Scientist have made efforts since at least the 1740&#039;s to find the caustion and cure for &#039;&#039;&#039;diphtheria toxin&#039;&#039;&#039;. It wasn&#039;t until Koch&#039;s devolpment of medical microbiology and [http://en.wikipedia.org/wiki/Koch&#039;s_postulates Koch&#039;s postulates] that it was even possible for progression towards understanding the molecular causes. It was later in Koch&#039;s laboratory that Friedrich Loeffler isolated a bacteria from a patient that died from &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039;. Koch and Friedrich later inoculated 23 guinea pigs with the isolated bacteria and they all died in two to five days. Loeffler had another observation that only the isolated bacteria from the pigs were growing at the site of inoculation. Therefore, he came to the conclusion that the bacteria isolated was the causation of the &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039;. In Pasture institute in Paris, both Emile Roux and Alexandre Yersin were able to isolate the toxin by growing a pure culture of &#039;&#039;Diphtheria bacilli&#039;&#039; and forcing them through a porcelain filter. This allowed to obtain no bacteria and only the toxin. The toxin was injected into laboratory animals and caused the same symptoms of &#039;&#039;Diphtheria bacilli&#039;&#039;. It wasn&#039;t until sixty-five years later that protein crystals were produced and the structure obtained. [http://en.wikipedia.org/wiki/Emil_Adolf_von_Behring Emil von Behring] published a paper with the discovery of diphtheria antitoxin one week after Koch found out the resistance gained by vaccination from &#039;&#039;Diphtheria bacilli&#039;&#039;. This lead to elimination of the disease diphtheria in developing countries.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Von Behring received a Nobel Prize for the antitoxin which later would be known as antibodies against &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039;. The next vaccine made was one mixed of toxin and antitoxin. The antitoxin relieved the harmful effects of the toxin which was the real vaccine. This was later replaced in 1923 with a vaccine of a formaldehyde-treated Diphtheria toxin. Today in developing countries people get routine vaccinations so that diphtheria is unknown.&lt;br /&gt;
&lt;br /&gt;
== Structure ==&lt;br /&gt;
&lt;br /&gt;
Diphtheria toxin is a protein made of 535 amino acids and is 58kDa in weight. The [http://en.wikipedia.org/wiki/Zymogen proenzyme](zymogen) must be cleaved into fragments A &amp;amp; B and reduced in order for the toxicity gene to be turn on. In each fragment there are two &amp;lt;scene name=&#039;Sandbox_Reserved_486/Disulfide_bonds/1&#039;&amp;gt;Disulfide Bonds&amp;lt;/scene&amp;gt;. There are also three domains C,T, and R that have different functions. The first crystal structure of the toxin was obtained in 1992 by x-ray crystallography. However, the structure was a dimer and generated by freezing the protein. The dimer is non-toxic but becomes a toxic monomer at neutral pH by dissociation. The &amp;lt;scene name=&#039;Sandbox_Reserved_486/Secondary_structure/1&#039;&amp;gt;Secondary Structure&amp;lt;/scene&amp;gt; of the molecule is made up of 24 helices, 31 beta sheets, and turns between each of them which adds up to be 535 residue protein. This makes for a mixture of &amp;lt;scene name=&#039;Sandbox_Reserved_486/Hydrophobic_hydrophilic/1&#039;&amp;gt;hydrophilic and hydrophobic areas&amp;lt;/scene&amp;gt; that allow for the seondary structure. The purple portion of the molecule is the polar ares while the gray was the hydrophobic areas. &lt;br /&gt;
&lt;br /&gt;
*&amp;lt;scene name=&#039;Sandbox_Reserved_486/Fragment_a/1&#039;&amp;gt;Fragment A&amp;lt;/scene&amp;gt; is about molecular mass of 21kDa  and is the catalytically active portion of the protein. &lt;br /&gt;
*&amp;lt;scene name=&#039;Sandbox_Reserved_486/Fragment_b/1&#039;&amp;gt;Fragment B&amp;lt;/scene&amp;gt; is about 37kDa and contains the receptor binding &amp;amp; translocation portions of the protein.&lt;br /&gt;
&lt;br /&gt;
The two fragments are then separated into three domains C, T, and R which correspond to three major functions of the toxin.&lt;br /&gt;
&lt;br /&gt;
*In fragment A contains domain C which contains the &amp;lt;scene name=&#039;Sandbox_Reserved_486/Active_site/1&#039;&amp;gt;Active site&amp;lt;/scene&amp;gt; and does the catalysis for the protein. It contains eight β strands and seven α helices.&lt;br /&gt;
&lt;br /&gt;
*The T domain is found in fragment B and is the translocation portion of the protein. The structure is made up of three layers of α helices. The outer layer contains 3 helices that are rich in polar residues that allow for the molecule to maintain the T domain as well as keeping the toxin soluble in neutral pH. &lt;br /&gt;
&lt;br /&gt;
*Another domain in fragment B is domain R which has the &amp;lt;scene name=&#039;Sandbox_Reserved_486/Receptor_binding_site/1&#039;&amp;gt;Receptor binding site&amp;lt;/scene&amp;gt; for the protein. The domain consist mostly of β sheets and changes conformation when interacting with cell membranes. In the R domain both Lsy516 and Phe530 play a role in recognizing receptors on cell surfaces.&lt;br /&gt;
&lt;br /&gt;
In the mechanism for Diphtheria toxin the R Domain binds to &amp;lt;scene name=&#039;Sandbox_Reserved_486/Ligands/2&#039;&amp;gt;ligands&amp;lt;/scene&amp;gt; which are NAD&amp;lt;sup&amp;gt;+&amp;lt;/sup&amp;gt; which can sometimes be switched with ApUp. The molecule ApUp is bound to a cleft on the front side of the C domain. &lt;br /&gt;
&lt;br /&gt;
[[Image:Page41-2.jpg]]&lt;br /&gt;
&lt;br /&gt;
== Mechanism ==&lt;br /&gt;
&lt;br /&gt;
[[Image:Mech1-2 (1).jpg]] The mechanism begins by the R domain recognizing the target cells by the molecules on the cells surface. The T domain translocates the C domain into the cytosol of the cell.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[Image:Toxin-1.jpg]]  figure 3: Mechanism of inactivation of elongation factor 2 (EF2) by diphtheria toxin &amp;lt;ref&amp;gt;Stephen, J., &amp;amp; Pietrowski, R. (1981). Bacterial toxins. (1 ed., p. 11). Washington: Van Nostrand Reinhold Co. Ltd. &amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Medical Implications &amp;amp; Possible Application ==&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039; is the causative agent of the disease [http://en.wikipedia.org/wiki/Diphtheria Diphtheria]. The lethal dose for humans and other susceptible eukarya is .1μg of toxin per kg of body weight&amp;lt;ref&amp;gt;Oram , D., &amp;amp; Holmes, R. (2006). Diphtheria toxin. (3 ed., pp. 245-252). Burlington, San Diego, London: Academic Press publications.&amp;lt;/ref&amp;gt;  A vaccine has been made and is routinely used in first world countries as a basic immunization. The vaccine is made up of formaldehyde-treated Diphtheria toxin. However, Diphtheria toxin has been used is many other medical applications such as the drug [http://en.wikipedia.org/wiki/Denileukin_diftitox Denileukin diftitox] and cancer suppressors. Denileukin diftitox is a protein that combines &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039; and [http://en.wikipedia.org/wiki/Interleukin-2 Interleukin 2]. In some  Leukemias and Lymphomas cells express Interleukin receptors in which the drug can bind to and release the toxin within the cells.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Another application that &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039; can be used for is a cancer suppressor. In terms of the R domain of the protein which as we know binds to pro-HB-EFG receptors of the surface of cells and is translocated into the cell by endocytosis. Some scientist have made a non-toxic mutant of diphtheria toxin CRM197 which is being used to block the signaling activity of the receptor. In some cancers such as ovarian cancer, pro-HB-EFG is overexpressed and blocking the signal has shown promise in suppressing the effects of pro-HB-EFG on cancer development.&amp;lt;ref&amp;gt;Oram , D., &amp;amp; Holmes, R. (2006). Diphtheria toxin. (3 ed., pp. 245-252). Burlington, San Diego, London: Academic Press publications.&amp;lt;/ref&amp;gt; Another example, is called [http://en.wikipedia.org/wiki/Immunotoxin immunotoxins] which change the R domain to recognize a specific cell surface and kill that cell. This is being tested against different cancer cell types and has been successful.&lt;br /&gt;
&lt;br /&gt;
== References ==&lt;br /&gt;
* Parker, M. (1996). Protein toxin structure. (1 ed., pp. 25-43). Georgetown: R.G. Landes Company.&lt;br /&gt;
&lt;br /&gt;
*Bennett, M., &amp;amp; Eisenberg, D. (2009, febuary 24). The refined structure of monomeric diphtheria toxin at 2.3 angstroms resolution. Retrieved from http://www.pdb.org/pdb/explore/explore.do?&lt;br /&gt;
&lt;br /&gt;
* Stephen, J., &amp;amp; Pietrowski, R. (1981). Bacterial toxins. (1 ed., p. 11). Washington: Van Nostrand Reinhold Co. Ltd.&lt;br /&gt;
&lt;br /&gt;
* Oram , D., &amp;amp; Holmes, R. (2006). Diphtheria toxin. (3 ed., pp. 245-252). Burlington, San Diego, London: Academic Press publications.&lt;br /&gt;
&lt;br /&gt;
* Diphtheria toxin. (2011, November 25). Retrieved from &amp;lt;http://en.wikipedia.org/wiki/Diphtheria_toxin&amp;gt;&lt;br /&gt;
&lt;br /&gt;
* Murphy JR (1996). &amp;quot;Corynebacterium Diphtheriae: Diphtheria Toxin Production&amp;quot;. In Baron S et al.. Medical microbiology (4 ed.). Galveston, Texas: Univ. of Texas Medical Branch. ISBN 0-9631172-1-1.&lt;br /&gt;
&lt;br /&gt;
=== Footnotes ===&lt;br /&gt;
{{reflist}}&lt;/div&gt;</summary>
		<author><name>Brittany Smith</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_486&amp;diff=1384341</id>
		<title>Sandbox Reserved 486</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_486&amp;diff=1384341"/>
		<updated>2012-05-02T14:03:57Z</updated>

		<summary type="html">&lt;p&gt;Brittany Smith: /* Mechanism */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Sandbox_Reserved_Robert_B_Rose_1}}&lt;br /&gt;
&amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
= Diphtheria toxin =&lt;br /&gt;
&#039;&#039;&#039;Diphtheria Toxin&#039;&#039;&#039; is an exotoxin produced by the organism [http://en.wikipedia.org/wiki/Corynebacterium_diphtheriae Corynebcterium diphtheria] which has been infected by a [http://en.wikipedia.org/wiki/Bacteriophage bacteriophage] that contains the Diphtheria toxin gene. The toxin is the causative agent of [http://en.wikipedia.org/wiki/Diphtheria diphtheria]. Symptoms for Diphtheria can range from a sore throat with low-grade fever and an adherent pseudomembrane of the tonsils, pharynx, or nose to  infected skin lesions which lack a characteristic appearance.&amp;lt;ref&amp;gt;http://www.cdc.gov/ncidod/dbmd/diseaseinfo/diptheria_t.htm &amp;lt;/ref&amp;gt; The toxin is distributed to distant organs by the circulatory system and may cause paralysis and congestive heart failure.&amp;lt;ref&amp;gt;http://www.ncbi.nlm.nih.gov/books/NBK7971/ &amp;lt;/ref&amp;gt;  The toxin attacks and kills eukaryotic cells by inactivating the [http://en.wikipedia.org/wiki/Elongation_factor Elongation factor] (&#039;&#039;&#039;EF-2&#039;&#039;&#039;) in translation. EF-2 allows for translocation of the peptidyl-tRNA from the A-site to the P-site, which in turn frees the A site for another aminoacyl-tRNA to bind. By inactivating the elongation factor 2 during translation the protein being made cannot be completed and therefore becomes nonfunctional. The toxin is in a &#039;&#039;&#039;class of A-B&#039;&#039;&#039; which includes cholera toxin, &#039;&#039;Escherichia coli&#039;&#039; heat labile enterotoxin, &#039;&#039;Pseudomonas aeruginosa&#039;&#039; exotoxin A, tetanus, botulinum neurotoxins, and Shiga toxin. A-B class is characterized by two functionally distinct components such as component A is the catalytic components while component B does the receptor binding function.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;Structure load=&#039;1mdt&#039; size=&#039;500&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;Diphtheria toxin structure&#039; scene=&#039;Insert optional scene name here&#039; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== History ==&lt;br /&gt;
Scientist have made efforts since at least the 1740&#039;s to find the caustion and cure for &#039;&#039;&#039;diphtheria toxin&#039;&#039;&#039;. It wasn&#039;t until Koch&#039;s devolpment of medical microbiology and [http://en.wikipedia.org/wiki/Koch&#039;s_postulates Koch&#039;s postulates] that it was even possible for progression towards understanding the molecular causes. It was later in Koch&#039;s laboratory that Friedrich Loeffler isolated a bacteria from a patient that died from &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039;. Koch and Friedrich later inoculated 23 guinea pigs with the isolated bacteria and they all died in two to five days. Loeffler had another observation that only the isolated bacteria from the pigs were growing at the site of inoculation. Therefore, he came to the conclusion that the bacteria isolated was the causation of the &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039;. In Pasture institute in Paris, both Emile Roux and Alexandre Yersin were able to isolate the toxin by growing a pure culture of &#039;&#039;Diphtheria bacilli&#039;&#039; and forcing them through a porcelain filter. This allowed to obtain no bacteria and only the toxin. The toxin was injected into laboratory animals and caused the same symptoms of &#039;&#039;Diphtheria bacilli&#039;&#039;. It wasn&#039;t until sixty-five years later that protein crystals were produced and the structure obtained. [http://en.wikipedia.org/wiki/Emil_Adolf_von_Behring Emil von Behring] published a paper with the discovery of diphtheria antitoxin one week after Koch found out the resistance gained by vaccination from &#039;&#039;Diphtheria bacilli&#039;&#039;. This lead to elimination of the disease diphtheria in developing countries.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Von Behring received a Nobel Prize for the antitoxin which later would be known as antibodies against &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039;. The next vaccine made was one mixed of toxin and antitoxin. The antitoxin relieved the harmful effects of the toxin which was the real vaccine. This was later replaced in 1923 with a vaccine of a formaldehyde-treated Diphtheria toxin. Today in developing countries people get routine vaccinations so that diphtheria is unknown.&lt;br /&gt;
&lt;br /&gt;
== Structure ==&lt;br /&gt;
&lt;br /&gt;
Diphtheria toxin is a protein made of 535 amino acids and is 58kDa in weight. The [http://en.wikipedia.org/wiki/Zymogen proenzyme](zymogen) must be cleaved into fragments A &amp;amp; B and reduced in order for the toxicity gene to be turn on. In each fragment there are two &amp;lt;scene name=&#039;Sandbox_Reserved_486/Disulfide_bonds/1&#039;&amp;gt;Disulfide Bonds&amp;lt;/scene&amp;gt;. There are also three domains C,T, and R that have different functions. The first crystal structure of the toxin was obtained in 1992 by x-ray crystallography. However, the structure was a dimer and generated by freezing the protein. The dimer is non-toxic but becomes a toxic monomer at neutral pH by dissociation. The &amp;lt;scene name=&#039;Sandbox_Reserved_486/Secondary_structure/1&#039;&amp;gt;Secondary Structure&amp;lt;/scene&amp;gt; of the molecule is made up of 24 helices, 31 beta sheets, and turns between each of them which adds up to be 535 residue protein. This makes for a mixture of &amp;lt;scene name=&#039;Sandbox_Reserved_486/Hydrophobic_hydrophilic/1&#039;&amp;gt;hydrophilic and hydrophobic areas&amp;lt;/scene&amp;gt; that allow for the seondary structure. The purple portion of the molecule is the polar ares while the gray was the hydrophobic areas. &lt;br /&gt;
&lt;br /&gt;
*&amp;lt;scene name=&#039;Sandbox_Reserved_486/Fragment_a/1&#039;&amp;gt;Fragment A&amp;lt;/scene&amp;gt; is about molecular mass of 21kDa  and is the catalytically active portion of the protein. &lt;br /&gt;
*&amp;lt;scene name=&#039;Sandbox_Reserved_486/Fragment_b/1&#039;&amp;gt;Fragment B&amp;lt;/scene&amp;gt; is about 37kDa and contains the receptor binding &amp;amp; translocation portions of the protein.&lt;br /&gt;
&lt;br /&gt;
The two fragments are then separated into three domains C, T, and R which correspond to three major functions of the toxin.&lt;br /&gt;
&lt;br /&gt;
*In fragment A contains domain C which contains the &amp;lt;scene name=&#039;Sandbox_Reserved_486/Active_site/1&#039;&amp;gt;Active site&amp;lt;/scene&amp;gt; and does the catalysis for the protein. It contains eight β strands and seven α helices.&lt;br /&gt;
&lt;br /&gt;
*The T domain is found in fragment B and is the translocation portion of the protein. The structure is made up of three layers of α helices. The outer layer contains 3 helices that are rich in polar residues that allow for the molecule to maintain the T domain as well as keeping the toxin soluble in neutral pH. &lt;br /&gt;
&lt;br /&gt;
*Another domain in fragment B is domain R which has the &amp;lt;scene name=&#039;Sandbox_Reserved_486/Receptor_binding_site/1&#039;&amp;gt;Receptor binding site&amp;lt;/scene&amp;gt; for the protein. The domain consist mostly of β sheets and changes conformation when interacting with cell membranes. In the R domain both Lsy516 and Phe530 play a role in recognizing receptors on cell surfaces.&lt;br /&gt;
&lt;br /&gt;
In the mechanism for Diphtheria toxin the R Domain binds to &amp;lt;scene name=&#039;Sandbox_Reserved_486/Ligands/2&#039;&amp;gt;ligands&amp;lt;/scene&amp;gt; which are NAD&amp;lt;sup&amp;gt;+&amp;lt;/sup&amp;gt; which can sometimes be switched with ApUp. The molecule ApUp is bound to a cleft on the front side of the C domain. &lt;br /&gt;
&lt;br /&gt;
[[Image:Page41-2.jpg]]&lt;br /&gt;
&lt;br /&gt;
== Mechanism ==&lt;br /&gt;
&lt;br /&gt;
[[Image:Mech1.jpg]] &lt;br /&gt;
&lt;br /&gt;
The mechanism begins by the R domain recognizing the target cells by the molecules on the cells surface. The T domain translocates the C domain into the cytosol of the cell.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[Image:Toxin-1.jpg]]  figure 3: Mechanism of inactivation of elongation factor 2 (EF2) by diphtheria toxin &amp;lt;ref&amp;gt;Stephen, J., &amp;amp; Pietrowski, R. (1981). Bacterial toxins. (1 ed., p. 11). Washington: Van Nostrand Reinhold Co. Ltd. &amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Medical Implications &amp;amp; Possible Application ==&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039; is the causative agent of the disease [http://en.wikipedia.org/wiki/Diphtheria Diphtheria]. The lethal dose for humans and other susceptible eukarya is .1μg of toxin per kg of body weight&amp;lt;ref&amp;gt;Oram , D., &amp;amp; Holmes, R. (2006). Diphtheria toxin. (3 ed., pp. 245-252). Burlington, San Diego, London: Academic Press publications.&amp;lt;/ref&amp;gt;  A vaccine has been made and is routinely used in first world countries as a basic immunization. The vaccine is made up of formaldehyde-treated Diphtheria toxin. However, Diphtheria toxin has been used is many other medical applications such as the drug [http://en.wikipedia.org/wiki/Denileukin_diftitox Denileukin diftitox] and cancer suppressors. Denileukin diftitox is a protein that combines &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039; and [http://en.wikipedia.org/wiki/Interleukin-2 Interleukin 2]. In some  Leukemias and Lymphomas cells express Interleukin receptors in which the drug can bind to and release the toxin within the cells.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Another application that &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039; can be used for is a cancer suppressor. In terms of the R domain of the protein which as we know binds to pro-HB-EFG receptors of the surface of cells and is translocated into the cell by endocytosis. Some scientist have made a non-toxic mutant of diphtheria toxin CRM197 which is being used to block the signaling activity of the receptor. In some cancers such as ovarian cancer, pro-HB-EFG is overexpressed and blocking the signal has shown promise in suppressing the effects of pro-HB-EFG on cancer development.&amp;lt;ref&amp;gt;Oram , D., &amp;amp; Holmes, R. (2006). Diphtheria toxin. (3 ed., pp. 245-252). Burlington, San Diego, London: Academic Press publications.&amp;lt;/ref&amp;gt; Another example, is called [http://en.wikipedia.org/wiki/Immunotoxin immunotoxins] which change the R domain to recognize a specific cell surface and kill that cell. This is being tested against different cancer cell types and has been successful.&lt;br /&gt;
&lt;br /&gt;
== References ==&lt;br /&gt;
* Parker, M. (1996). Protein toxin structure. (1 ed., pp. 25-43). Georgetown: R.G. Landes Company.&lt;br /&gt;
&lt;br /&gt;
*Bennett, M., &amp;amp; Eisenberg, D. (2009, febuary 24). The refined structure of monomeric diphtheria toxin at 2.3 angstroms resolution. Retrieved from http://www.pdb.org/pdb/explore/explore.do?&lt;br /&gt;
&lt;br /&gt;
* Stephen, J., &amp;amp; Pietrowski, R. (1981). Bacterial toxins. (1 ed., p. 11). Washington: Van Nostrand Reinhold Co. Ltd.&lt;br /&gt;
&lt;br /&gt;
* Oram , D., &amp;amp; Holmes, R. (2006). Diphtheria toxin. (3 ed., pp. 245-252). Burlington, San Diego, London: Academic Press publications.&lt;br /&gt;
&lt;br /&gt;
* Diphtheria toxin. (2011, November 25). Retrieved from &amp;lt;http://en.wikipedia.org/wiki/Diphtheria_toxin&amp;gt;&lt;br /&gt;
&lt;br /&gt;
* Murphy JR (1996). &amp;quot;Corynebacterium Diphtheriae: Diphtheria Toxin Production&amp;quot;. In Baron S et al.. Medical microbiology (4 ed.). Galveston, Texas: Univ. of Texas Medical Branch. ISBN 0-9631172-1-1.&lt;br /&gt;
&lt;br /&gt;
=== Footnotes ===&lt;br /&gt;
{{reflist}}&lt;/div&gt;</summary>
		<author><name>Brittany Smith</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_486&amp;diff=1384334</id>
		<title>Sandbox Reserved 486</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_486&amp;diff=1384334"/>
		<updated>2012-05-02T13:58:36Z</updated>

		<summary type="html">&lt;p&gt;Brittany Smith: /* Structure */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Sandbox_Reserved_Robert_B_Rose_1}}&lt;br /&gt;
&amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
= Diphtheria toxin =&lt;br /&gt;
&#039;&#039;&#039;Diphtheria Toxin&#039;&#039;&#039; is an exotoxin produced by the organism [http://en.wikipedia.org/wiki/Corynebacterium_diphtheriae Corynebcterium diphtheria] which has been infected by a [http://en.wikipedia.org/wiki/Bacteriophage bacteriophage] that contains the Diphtheria toxin gene. The toxin is the causative agent of [http://en.wikipedia.org/wiki/Diphtheria diphtheria]. Symptoms for Diphtheria can range from a sore throat with low-grade fever and an adherent pseudomembrane of the tonsils, pharynx, or nose to  infected skin lesions which lack a characteristic appearance.&amp;lt;ref&amp;gt;http://www.cdc.gov/ncidod/dbmd/diseaseinfo/diptheria_t.htm &amp;lt;/ref&amp;gt; The toxin is distributed to distant organs by the circulatory system and may cause paralysis and congestive heart failure.&amp;lt;ref&amp;gt;http://www.ncbi.nlm.nih.gov/books/NBK7971/ &amp;lt;/ref&amp;gt;  The toxin attacks and kills eukaryotic cells by inactivating the [http://en.wikipedia.org/wiki/Elongation_factor Elongation factor] (&#039;&#039;&#039;EF-2&#039;&#039;&#039;) in translation. EF-2 allows for translocation of the peptidyl-tRNA from the A-site to the P-site, which in turn frees the A site for another aminoacyl-tRNA to bind. By inactivating the elongation factor 2 during translation the protein being made cannot be completed and therefore becomes nonfunctional. The toxin is in a &#039;&#039;&#039;class of A-B&#039;&#039;&#039; which includes cholera toxin, &#039;&#039;Escherichia coli&#039;&#039; heat labile enterotoxin, &#039;&#039;Pseudomonas aeruginosa&#039;&#039; exotoxin A, tetanus, botulinum neurotoxins, and Shiga toxin. A-B class is characterized by two functionally distinct components such as component A is the catalytic components while component B does the receptor binding function.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;Structure load=&#039;1mdt&#039; size=&#039;500&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;Diphtheria toxin structure&#039; scene=&#039;Insert optional scene name here&#039; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== History ==&lt;br /&gt;
Scientist have made efforts since at least the 1740&#039;s to find the caustion and cure for &#039;&#039;&#039;diphtheria toxin&#039;&#039;&#039;. It wasn&#039;t until Koch&#039;s devolpment of medical microbiology and [http://en.wikipedia.org/wiki/Koch&#039;s_postulates Koch&#039;s postulates] that it was even possible for progression towards understanding the molecular causes. It was later in Koch&#039;s laboratory that Friedrich Loeffler isolated a bacteria from a patient that died from &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039;. Koch and Friedrich later inoculated 23 guinea pigs with the isolated bacteria and they all died in two to five days. Loeffler had another observation that only the isolated bacteria from the pigs were growing at the site of inoculation. Therefore, he came to the conclusion that the bacteria isolated was the causation of the &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039;. In Pasture institute in Paris, both Emile Roux and Alexandre Yersin were able to isolate the toxin by growing a pure culture of &#039;&#039;Diphtheria bacilli&#039;&#039; and forcing them through a porcelain filter. This allowed to obtain no bacteria and only the toxin. The toxin was injected into laboratory animals and caused the same symptoms of &#039;&#039;Diphtheria bacilli&#039;&#039;. It wasn&#039;t until sixty-five years later that protein crystals were produced and the structure obtained. [http://en.wikipedia.org/wiki/Emil_Adolf_von_Behring Emil von Behring] published a paper with the discovery of diphtheria antitoxin one week after Koch found out the resistance gained by vaccination from &#039;&#039;Diphtheria bacilli&#039;&#039;. This lead to elimination of the disease diphtheria in developing countries.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Von Behring received a Nobel Prize for the antitoxin which later would be known as antibodies against &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039;. The next vaccine made was one mixed of toxin and antitoxin. The antitoxin relieved the harmful effects of the toxin which was the real vaccine. This was later replaced in 1923 with a vaccine of a formaldehyde-treated Diphtheria toxin. Today in developing countries people get routine vaccinations so that diphtheria is unknown.&lt;br /&gt;
&lt;br /&gt;
== Structure ==&lt;br /&gt;
&lt;br /&gt;
Diphtheria toxin is a protein made of 535 amino acids and is 58kDa in weight. The [http://en.wikipedia.org/wiki/Zymogen proenzyme](zymogen) must be cleaved into fragments A &amp;amp; B and reduced in order for the toxicity gene to be turn on. In each fragment there are two &amp;lt;scene name=&#039;Sandbox_Reserved_486/Disulfide_bonds/1&#039;&amp;gt;Disulfide Bonds&amp;lt;/scene&amp;gt;. There are also three domains C,T, and R that have different functions. The first crystal structure of the toxin was obtained in 1992 by x-ray crystallography. However, the structure was a dimer and generated by freezing the protein. The dimer is non-toxic but becomes a toxic monomer at neutral pH by dissociation. The &amp;lt;scene name=&#039;Sandbox_Reserved_486/Secondary_structure/1&#039;&amp;gt;Secondary Structure&amp;lt;/scene&amp;gt; of the molecule is made up of 24 helices, 31 beta sheets, and turns between each of them which adds up to be 535 residue protein. This makes for a mixture of &amp;lt;scene name=&#039;Sandbox_Reserved_486/Hydrophobic_hydrophilic/1&#039;&amp;gt;hydrophilic and hydrophobic areas&amp;lt;/scene&amp;gt; that allow for the seondary structure. The purple portion of the molecule is the polar ares while the gray was the hydrophobic areas. &lt;br /&gt;
&lt;br /&gt;
*&amp;lt;scene name=&#039;Sandbox_Reserved_486/Fragment_a/1&#039;&amp;gt;Fragment A&amp;lt;/scene&amp;gt; is about molecular mass of 21kDa  and is the catalytically active portion of the protein. &lt;br /&gt;
*&amp;lt;scene name=&#039;Sandbox_Reserved_486/Fragment_b/1&#039;&amp;gt;Fragment B&amp;lt;/scene&amp;gt; is about 37kDa and contains the receptor binding &amp;amp; translocation portions of the protein.&lt;br /&gt;
&lt;br /&gt;
The two fragments are then separated into three domains C, T, and R which correspond to three major functions of the toxin.&lt;br /&gt;
&lt;br /&gt;
*In fragment A contains domain C which contains the &amp;lt;scene name=&#039;Sandbox_Reserved_486/Active_site/1&#039;&amp;gt;Active site&amp;lt;/scene&amp;gt; and does the catalysis for the protein. It contains eight β strands and seven α helices.&lt;br /&gt;
&lt;br /&gt;
*The T domain is found in fragment B and is the translocation portion of the protein. The structure is made up of three layers of α helices. The outer layer contains 3 helices that are rich in polar residues that allow for the molecule to maintain the T domain as well as keeping the toxin soluble in neutral pH. &lt;br /&gt;
&lt;br /&gt;
*Another domain in fragment B is domain R which has the &amp;lt;scene name=&#039;Sandbox_Reserved_486/Receptor_binding_site/1&#039;&amp;gt;Receptor binding site&amp;lt;/scene&amp;gt; for the protein. The domain consist mostly of β sheets and changes conformation when interacting with cell membranes. In the R domain both Lsy516 and Phe530 play a role in recognizing receptors on cell surfaces.&lt;br /&gt;
&lt;br /&gt;
In the mechanism for Diphtheria toxin the R Domain binds to &amp;lt;scene name=&#039;Sandbox_Reserved_486/Ligands/2&#039;&amp;gt;ligands&amp;lt;/scene&amp;gt; which are NAD&amp;lt;sup&amp;gt;+&amp;lt;/sup&amp;gt; which can sometimes be switched with ApUp. The molecule ApUp is bound to a cleft on the front side of the C domain. &lt;br /&gt;
&lt;br /&gt;
[[Image:Page41-2.jpg]]&lt;br /&gt;
&lt;br /&gt;
== Mechanism ==&lt;br /&gt;
&lt;br /&gt;
[[Image:Mech1.jpg]] &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[Image:Toxin-1.jpg]]  figure 3: Mechanism of inactivation of elongation factor 2 (EF2) by diphtheria toxin &amp;lt;ref&amp;gt;Stephen, J., &amp;amp; Pietrowski, R. (1981). Bacterial toxins. (1 ed., p. 11). Washington: Van Nostrand Reinhold Co. Ltd. &amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Medical Implications &amp;amp; Possible Application ==&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039; is the causative agent of the disease [http://en.wikipedia.org/wiki/Diphtheria Diphtheria]. The lethal dose for humans and other susceptible eukarya is .1μg of toxin per kg of body weight&amp;lt;ref&amp;gt;Oram , D., &amp;amp; Holmes, R. (2006). Diphtheria toxin. (3 ed., pp. 245-252). Burlington, San Diego, London: Academic Press publications.&amp;lt;/ref&amp;gt;  A vaccine has been made and is routinely used in first world countries as a basic immunization. The vaccine is made up of formaldehyde-treated Diphtheria toxin. However, Diphtheria toxin has been used is many other medical applications such as the drug [http://en.wikipedia.org/wiki/Denileukin_diftitox Denileukin diftitox] and cancer suppressors. Denileukin diftitox is a protein that combines &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039; and [http://en.wikipedia.org/wiki/Interleukin-2 Interleukin 2]. In some  Leukemias and Lymphomas cells express Interleukin receptors in which the drug can bind to and release the toxin within the cells.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Another application that &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039; can be used for is a cancer suppressor. In terms of the R domain of the protein which as we know binds to pro-HB-EFG receptors of the surface of cells and is translocated into the cell by endocytosis. Some scientist have made a non-toxic mutant of diphtheria toxin CRM197 which is being used to block the signaling activity of the receptor. In some cancers such as ovarian cancer, pro-HB-EFG is overexpressed and blocking the signal has shown promise in suppressing the effects of pro-HB-EFG on cancer development.&amp;lt;ref&amp;gt;Oram , D., &amp;amp; Holmes, R. (2006). Diphtheria toxin. (3 ed., pp. 245-252). Burlington, San Diego, London: Academic Press publications.&amp;lt;/ref&amp;gt; Another example, is called [http://en.wikipedia.org/wiki/Immunotoxin immunotoxins] which change the R domain to recognize a specific cell surface and kill that cell. This is being tested against different cancer cell types and has been successful.&lt;br /&gt;
&lt;br /&gt;
== References ==&lt;br /&gt;
* Parker, M. (1996). Protein toxin structure. (1 ed., pp. 25-43). Georgetown: R.G. Landes Company.&lt;br /&gt;
&lt;br /&gt;
*Bennett, M., &amp;amp; Eisenberg, D. (2009, febuary 24). The refined structure of monomeric diphtheria toxin at 2.3 angstroms resolution. Retrieved from http://www.pdb.org/pdb/explore/explore.do?&lt;br /&gt;
&lt;br /&gt;
* Stephen, J., &amp;amp; Pietrowski, R. (1981). Bacterial toxins. (1 ed., p. 11). Washington: Van Nostrand Reinhold Co. Ltd.&lt;br /&gt;
&lt;br /&gt;
* Oram , D., &amp;amp; Holmes, R. (2006). Diphtheria toxin. (3 ed., pp. 245-252). Burlington, San Diego, London: Academic Press publications.&lt;br /&gt;
&lt;br /&gt;
* Diphtheria toxin. (2011, November 25). Retrieved from &amp;lt;http://en.wikipedia.org/wiki/Diphtheria_toxin&amp;gt;&lt;br /&gt;
&lt;br /&gt;
* Murphy JR (1996). &amp;quot;Corynebacterium Diphtheriae: Diphtheria Toxin Production&amp;quot;. In Baron S et al.. Medical microbiology (4 ed.). Galveston, Texas: Univ. of Texas Medical Branch. ISBN 0-9631172-1-1.&lt;br /&gt;
&lt;br /&gt;
=== Footnotes ===&lt;br /&gt;
{{reflist}}&lt;/div&gt;</summary>
		<author><name>Brittany Smith</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_486&amp;diff=1384080</id>
		<title>Sandbox Reserved 486</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_486&amp;diff=1384080"/>
		<updated>2012-05-02T05:00:03Z</updated>

		<summary type="html">&lt;p&gt;Brittany Smith: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Sandbox_Reserved_Robert_B_Rose_1}}&lt;br /&gt;
&amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
= Diphtheria toxin =&lt;br /&gt;
&#039;&#039;&#039;Diphtheria Toxin&#039;&#039;&#039; is an exotoxin produced by the organism [http://en.wikipedia.org/wiki/Corynebacterium_diphtheriae Corynebcterium diphtheria] which has been infected by a [http://en.wikipedia.org/wiki/Bacteriophage bacteriophage] that contains the Diphtheria toxin gene. The toxin is the causative agent of [http://en.wikipedia.org/wiki/Diphtheria diphtheria]. Symptoms for Diphtheria can range from a sore throat with low-grade fever and an adherent pseudomembrane of the tonsils, pharynx, or nose to  infected skin lesions which lack a characteristic appearance.&amp;lt;ref&amp;gt;http://www.cdc.gov/ncidod/dbmd/diseaseinfo/diptheria_t.htm &amp;lt;/ref&amp;gt; The toxin is distributed to distant organs by the circulatory system and may cause paralysis and congestive heart failure.&amp;lt;ref&amp;gt;http://www.ncbi.nlm.nih.gov/books/NBK7971/ &amp;lt;/ref&amp;gt;  The toxin attacks and kills eukaryotic cells by inactivating the [http://en.wikipedia.org/wiki/Elongation_factor Elongation factor] (&#039;&#039;&#039;EF-2&#039;&#039;&#039;) in translation. EF-2 allows for translocation of the peptidyl-tRNA from the A-site to the P-site, which in turn frees the A site for another aminoacyl-tRNA to bind. By inactivating the elongation factor 2 during translation the protein being made cannot be completed and therefore becomes nonfunctional. The toxin is in a &#039;&#039;&#039;class of A-B&#039;&#039;&#039; which includes cholera toxin, &#039;&#039;Escherichia coli&#039;&#039; heat labile enterotoxin, &#039;&#039;Pseudomonas aeruginosa&#039;&#039; exotoxin A, tetanus, botulinum neurotoxins, and Shiga toxin. A-B class is characterized by two functionally distinct components such as component A is the catalytic components while component B does the receptor binding function.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;Structure load=&#039;1mdt&#039; size=&#039;500&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;Diphtheria toxin structure&#039; scene=&#039;Insert optional scene name here&#039; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== History ==&lt;br /&gt;
Scientist have made efforts since at least the 1740&#039;s to find the caustion and cure for &#039;&#039;&#039;diphtheria toxin&#039;&#039;&#039;. It wasn&#039;t until Koch&#039;s devolpment of medical microbiology and [http://en.wikipedia.org/wiki/Koch&#039;s_postulates Koch&#039;s postulates] that it was even possible for progression towards understanding the molecular causes. It was later in Koch&#039;s laboratory that Friedrich Loeffler isolated a bacteria from a patient that died from &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039;. Koch and Friedrich later inoculated 23 guinea pigs with the isolated bacteria and they all died in two to five days. Loeffler had another observation that only the isolated bacteria from the pigs were growing at the site of inoculation. Therefore, he came to the conclusion that the bacteria isolated was the causation of the &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039;. In Pasture institute in Paris, both Emile Roux and Alexandre Yersin were able to isolate the toxin by growing a pure culture of &#039;&#039;Diphtheria bacilli&#039;&#039; and forcing them through a porcelain filter. This allowed to obtain no bacteria and only the toxin. The toxin was injected into laboratory animals and caused the same symptoms of &#039;&#039;Diphtheria bacilli&#039;&#039;. It wasn&#039;t until sixty-five years later that protein crystals were produced and the structure obtained. [http://en.wikipedia.org/wiki/Emil_Adolf_von_Behring Emil von Behring] published a paper with the discovery of diphtheria antitoxin one week after Koch found out the resistance gained by vaccination from &#039;&#039;Diphtheria bacilli&#039;&#039;. This lead to elimination of the disease diphtheria in developing countries.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Von Behring received a Nobel Prize for the antitoxin which later would be known as antibodies against &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039;. The next vaccine made was one mixed of toxin and antitoxin. The antitoxin relieved the harmful effects of the toxin which was the real vaccine. This was later replaced in 1923 with a vaccine of a formaldehyde-treated Diphtheria toxin. Today in developing countries people get routine vaccinations so that diphtheria is unknown.&lt;br /&gt;
&lt;br /&gt;
== Structure ==&lt;br /&gt;
&lt;br /&gt;
Diphtheria toxin is a protein made of 535 amino acids and is 58kDa in weight. The [http://en.wikipedia.org/wiki/Zymogen proenzyme](zymogen) must be cleaved into fragments A &amp;amp; B and reduced in order for the toxicity gene to be turn on. In each fragment there are two &amp;lt;scene name=&#039;Sandbox_Reserved_486/Disulfide_bonds/1&#039;&amp;gt;Disulfide Bonds&amp;lt;/scene&amp;gt;. There are also three domains C,T, and R that have different functions. The first crystal structure of the toxin was obtained in 1992 by x-ray crystallography. However, the structure was a dimer and generated by freezing the protein. The dimer is non-toxic but becomes a toxic monomer at neutral pH by dissociation. The &amp;lt;scene name=&#039;Sandbox_Reserved_486/Secondary_structure/1&#039;&amp;gt;Secondary Structure&amp;lt;/scene&amp;gt; of the molecule is made up of 24 helices, 31 beta sheets, and turns between each of them which adds up to be 535 residue protein. This makes for a mixture of &amp;lt;scene name=&#039;Sandbox_Reserved_486/Hydrophobic_hydrophilic/1&#039;&amp;gt;hydrophilic and hydrophobic areas&amp;lt;/scene&amp;gt; that allow for the seondary structure. The purple portion of the molecule is the polar ares while the gray was the hydrophobic areas. &lt;br /&gt;
&lt;br /&gt;
*&amp;lt;scene name=&#039;Sandbox_Reserved_486/Fragment_a/1&#039;&amp;gt;Fragment A&amp;lt;/scene&amp;gt; is about molecular mass of 21kDa  and is the catalytically active portion of the protein. &lt;br /&gt;
*&amp;lt;scene name=&#039;Sandbox_Reserved_486/Fragment_b/1&#039;&amp;gt;Fragment B&amp;lt;/scene&amp;gt; is about 37kDa and contains the receptor binding &amp;amp; translocation portions of the protein.&lt;br /&gt;
&lt;br /&gt;
The two fragments are then separated into three domains C, T, and R which correspond to three major functions of the toxin.&lt;br /&gt;
&lt;br /&gt;
*In fragment A contains domain C which contains the &amp;lt;scene name=&#039;Sandbox_Reserved_486/Active_site/1&#039;&amp;gt;Active site&amp;lt;/scene&amp;gt; and does the catalysis for the protein. It contains eight β strands and seven α helices.&lt;br /&gt;
&lt;br /&gt;
*The T domain is found in fragment B and is the translocation portion of the protein. The structure is made up of three layers of α helices. The outer layer contains 3 helices that are rich in polar residues that allow for the molecule to maintain the T domain as well as keeping the toxin soluble in neutral pH. &lt;br /&gt;
&lt;br /&gt;
*Another domain in fragment B is domain R which has the &amp;lt;scene name=&#039;Sandbox_Reserved_486/Receptor_binding_site/1&#039;&amp;gt;Receptor binding site&amp;lt;/scene&amp;gt; for the protein. The domain consist mostly of β sheets and changes conformation when interacting with cell membranes. In the R domain both Lsy516 and Phe530 play a role in recognizing receptors on cell surfaces.&lt;br /&gt;
&lt;br /&gt;
In the mechanism for Diphtheria toxin the R Domain binds to &amp;lt;scene name=&#039;Sandbox_Reserved_486/Ligands/2&#039;&amp;gt;ligands&amp;lt;/scene&amp;gt; which are NAD&amp;lt;sup&amp;gt;+&amp;lt;/sup&amp;gt; which can sometimes be switched with ApUp. The other ligand is the pro-HB-EFG which is binded when translocated into the cell by endocytosis.&lt;br /&gt;
&lt;br /&gt;
[[Image:Page41-2.jpg]]&lt;br /&gt;
&lt;br /&gt;
== Mechanism ==&lt;br /&gt;
&lt;br /&gt;
[[Image:Mech1.jpg]] &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[Image:Toxin-1.jpg]]  figure 3: Mechanism of inactivation of elongation factor 2 (EF2) by diphtheria toxin &amp;lt;ref&amp;gt;Stephen, J., &amp;amp; Pietrowski, R. (1981). Bacterial toxins. (1 ed., p. 11). Washington: Van Nostrand Reinhold Co. Ltd. &amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Medical Implications &amp;amp; Possible Application ==&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039; is the causative agent of the disease [http://en.wikipedia.org/wiki/Diphtheria Diphtheria]. The lethal dose for humans and other susceptible eukarya is .1μg of toxin per kg of body weight&amp;lt;ref&amp;gt;Oram , D., &amp;amp; Holmes, R. (2006). Diphtheria toxin. (3 ed., pp. 245-252). Burlington, San Diego, London: Academic Press publications.&amp;lt;/ref&amp;gt;  A vaccine has been made and is routinely used in first world countries as a basic immunization. The vaccine is made up of formaldehyde-treated Diphtheria toxin. However, Diphtheria toxin has been used is many other medical applications such as the drug [http://en.wikipedia.org/wiki/Denileukin_diftitox Denileukin diftitox] and cancer suppressors. Denileukin diftitox is a protein that combines &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039; and [http://en.wikipedia.org/wiki/Interleukin-2 Interleukin 2]. In some  Leukemias and Lymphomas cells express Interleukin receptors in which the drug can bind to and release the toxin within the cells.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Another application that &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039; can be used for is a cancer suppressor. In terms of the R domain of the protein which as we know binds to pro-HB-EFG receptors of the surface of cells and is translocated into the cell by endocytosis. Some scientist have made a non-toxic mutant of diphtheria toxin CRM197 which is being used to block the signaling activity of the receptor. In some cancers such as ovarian cancer, pro-HB-EFG is overexpressed and blocking the signal has shown promise in suppressing the effects of pro-HB-EFG on cancer development.&amp;lt;ref&amp;gt;Oram , D., &amp;amp; Holmes, R. (2006). Diphtheria toxin. (3 ed., pp. 245-252). Burlington, San Diego, London: Academic Press publications.&amp;lt;/ref&amp;gt; Another example, is called [http://en.wikipedia.org/wiki/Immunotoxin immunotoxins] which change the R domain to recognize a specific cell surface and kill that cell. This is being tested against different cancer cell types and has been successful.&lt;br /&gt;
&lt;br /&gt;
== References ==&lt;br /&gt;
* Parker, M. (1996). Protein toxin structure. (1 ed., pp. 25-43). Georgetown: R.G. Landes Company.&lt;br /&gt;
&lt;br /&gt;
*Bennett, M., &amp;amp; Eisenberg, D. (2009, febuary 24). The refined structure of monomeric diphtheria toxin at 2.3 angstroms resolution. Retrieved from http://www.pdb.org/pdb/explore/explore.do?&lt;br /&gt;
&lt;br /&gt;
* Stephen, J., &amp;amp; Pietrowski, R. (1981). Bacterial toxins. (1 ed., p. 11). Washington: Van Nostrand Reinhold Co. Ltd.&lt;br /&gt;
&lt;br /&gt;
* Oram , D., &amp;amp; Holmes, R. (2006). Diphtheria toxin. (3 ed., pp. 245-252). Burlington, San Diego, London: Academic Press publications.&lt;br /&gt;
&lt;br /&gt;
* Diphtheria toxin. (2011, November 25). Retrieved from &amp;lt;http://en.wikipedia.org/wiki/Diphtheria_toxin&amp;gt;&lt;br /&gt;
&lt;br /&gt;
* Murphy JR (1996). &amp;quot;Corynebacterium Diphtheriae: Diphtheria Toxin Production&amp;quot;. In Baron S et al.. Medical microbiology (4 ed.). Galveston, Texas: Univ. of Texas Medical Branch. ISBN 0-9631172-1-1.&lt;br /&gt;
&lt;br /&gt;
=== Footnotes ===&lt;br /&gt;
{{reflist}}&lt;/div&gt;</summary>
		<author><name>Brittany Smith</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_486&amp;diff=1384065</id>
		<title>Sandbox Reserved 486</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_486&amp;diff=1384065"/>
		<updated>2012-05-02T04:39:18Z</updated>

		<summary type="html">&lt;p&gt;Brittany Smith: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Sandbox_Reserved_Robert_B_Rose_1}}&lt;br /&gt;
&amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
= Diphtheria toxin =&lt;br /&gt;
&#039;&#039;&#039;Diphtheria Toxin&#039;&#039;&#039; is an exotoxin produced by the organism [http://en.wikipedia.org/wiki/Corynebacterium_diphtheriae Corynebcterium diphtheria] which has been infected by a [http://en.wikipedia.org/wiki/Bacteriophage bacteriophage] that contains the Diphtheria toxin gene. The toxin is the causative agent of [http://en.wikipedia.org/wiki/Diphtheria diphtheria]. Symptoms for Diphtheria can range from a sore throat with low-grade fever and an adherent pseudomembrane of the tonsils, pharynx, or nose to  infected skin lesions which lack a characteristic appearance.&amp;lt;ref&amp;gt;http://www.cdc.gov/ncidod/dbmd/diseaseinfo/diptheria_t.htm &amp;lt;/ref&amp;gt; The toxin is distributed to distant organs by the circulatory system and may cause paralysis and congestive heart failure.&amp;lt;ref&amp;gt;http://www.ncbi.nlm.nih.gov/books/NBK7971/ &amp;lt;/ref&amp;gt;  The toxin attacks and kills eukaryotic cells by inactivating the [http://en.wikipedia.org/wiki/Elongation_factor Elongation factor] (&#039;&#039;&#039;EF-2&#039;&#039;&#039;) in translation. EF-2 allows for translocation of the peptidyl-tRNA from the A-site to the P-site, which in turn frees the A site for another aminoacyl-tRNA to bind. By inactivating the elongation factor 2 during translation the protein being made cannot be completed and therefore becomes nonfunctional. The toxin is in a &#039;&#039;&#039;class of A-B&#039;&#039;&#039; which includes cholera toxin, &#039;&#039;Escherichia coli&#039;&#039; heat labile enterotoxin, &#039;&#039;Pseudomonas aeruginosa&#039;&#039; exotoxin A, tetanus, botulinum neurotoxins, and Shiga toxin. A-B class is characterized by two functionally distinct components such as component A is the catalytic components while component B does the receptor binding function.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;Structure load=&#039;1mdt&#039; size=&#039;500&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;Diphtheria toxin structure&#039; scene=&#039;Insert optional scene name here&#039; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== History ==&lt;br /&gt;
Scientist have made efforts since at least the 1740&#039;s to find the caustion and cure for &#039;&#039;&#039;diphtheria toxin&#039;&#039;&#039;. It wasn&#039;t until Koch&#039;s devolpment of medical microbiology and [http://en.wikipedia.org/wiki/Koch&#039;s_postulates Koch&#039;s postulates] that it was even possible for progression towards understanding the molecular causes. It was later in Koch&#039;s laboratory that Friedrich Loeffler isolated a bacteria from a patient that died from &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039;. Koch and Friedrich later inoculated 23 guinea pigs with the isolated bacteria and they all died in two to five days. Loeffler had another observation that only the isolated bacteria from the pigs were growing at the site of inoculation. Therefore, he came to the conclusion that the bacteria isolated was the causation of the &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039;. In Pasture institute in Paris, both Emile Roux and Alexandre Yersin were able to isolate the toxin by growing a pure culture of &#039;&#039;Diphtheria bacilli&#039;&#039; and forcing them through a porcelain filter. This allowed to obtain no bacteria and only the toxin. The toxin was injected into laboratory animals and caused the same symptoms of &#039;&#039;Diphtheria bacilli&#039;&#039;. It wasn&#039;t until sixty-five years later that protein crystals were produced and the structure obtained. [http://en.wikipedia.org/wiki/Emil_Adolf_von_Behring Emil von Behring] published a paper with the discovery of diphtheria antitoxin one week after Koch found out the resistance gained by vaccination from &#039;&#039;Diphtheria bacilli&#039;&#039;. This lead to elimination of the disease diphtheria in developing countries.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Von Behring received a Nobel Prize for the antitoxin which later would be known as antibodies against &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039;. The next vaccine made was one mixed of toxin and antitoxin. The antitoxin relieved the harmful effects of the toxin which was the real vaccine. This was later replaced in 1923 with a vaccine of a formaldehyde-treated Diphtheria toxin. Today in developing countries people get routine vaccinations so that diphtheria is unknown.&lt;br /&gt;
&lt;br /&gt;
== Structure ==&lt;br /&gt;
&lt;br /&gt;
Diphtheria toxin is a protein made of 535 amino acids and is 58kDa in weight. The [http://en.wikipedia.org/wiki/Zymogen proenzyme](zymogen) must be cleaved into fragments A &amp;amp; B and reduced in order for the toxicity gene to be turn on. In each fragment there are two &amp;lt;scene name=&#039;Sandbox_Reserved_486/Disulfide_bonds/1&#039;&amp;gt;Disulfide Bonds&amp;lt;/scene&amp;gt;. There are also three domains C,T, and R that have different functions. The first crystal structure of the toxin was obtained in 1992 by x-ray crystallography. However, the structure was a dimer and generated by freezing the protein. The dimer is non-toxic but becomes a toxic monomer at neutral pH by dissociation. The &amp;lt;scene name=&#039;Sandbox_Reserved_486/Secondary_structure/1&#039;&amp;gt;Secondary Structure&amp;lt;/scene&amp;gt; of the molecule is made up of 24 helices, 31 beta sheets, and turns between each of them which adds up to be 535 residue protein. This makes for a mixture of &amp;lt;scene name=&#039;Sandbox_Reserved_486/Hydrophobic_hydrophilic/1&#039;&amp;gt;hydrophilic and hydrophobic areas&amp;lt;/scene&amp;gt; that allow for the seondary structure. The purple portion of the molecule is the polar ares while the gray was the hydrophobic areas. &lt;br /&gt;
&lt;br /&gt;
*&amp;lt;scene name=&#039;Sandbox_Reserved_486/Fragment_a/1&#039;&amp;gt;Fragment A&amp;lt;/scene&amp;gt; is about molecular mass of 21kDa  and is the catalytically active portion of the protein. &lt;br /&gt;
*&amp;lt;scene name=&#039;Sandbox_Reserved_486/Fragment_b/1&#039;&amp;gt;Fragment B&amp;lt;/scene&amp;gt; is about 37kDa and contains the receptor binding &amp;amp; translocation portions of the protein.&lt;br /&gt;
&lt;br /&gt;
The two fragments are then separated into three domains C, T, and R which correspond to three major functions of the toxin.&lt;br /&gt;
&lt;br /&gt;
*In fragment A contains domain C which contains the &amp;lt;scene name=&#039;Sandbox_Reserved_486/Active_site/1&#039;&amp;gt;Active site&amp;lt;/scene&amp;gt; and does the catalysis for the protein. It contains eight β strands and seven α helices.&lt;br /&gt;
&lt;br /&gt;
*The T domain is found in fragment B and is the translocation portion of the protein. The structure is made up of three layers of α helices. The outer layer contains 3 helices that are rich in polar residues that allow for the molecule to maintain the T domain as well as keeping the toxin soluble in neutral pH. &lt;br /&gt;
&lt;br /&gt;
*Another domain in fragment B is domain R which has the &amp;lt;scene name=&#039;Sandbox_Reserved_486/Receptor_binding_site/1&#039;&amp;gt;Receptor binding site&amp;lt;/scene&amp;gt; for the protein. The domain consist mostly of β sheets and changes conformation when interacting with cell membranes. In the R domain both Lsy516 and Phe530 play a role in recognizing receptors on cell surfaces.&lt;br /&gt;
&lt;br /&gt;
In the mechanism for Diphtheria toxin the R Domain binds to &amp;lt;scene name=&#039;Sandbox_Reserved_486/Ligands/2&#039;&amp;gt;ligands&amp;lt;/scene&amp;gt; which are NAD&amp;lt;sup&amp;gt;+&amp;lt;/sup&amp;gt; which can sometimes be switched with ApUp. The other ligand is the pro-HB-EFG which is binded when translocated into the cell by endocytosis.&lt;br /&gt;
&lt;br /&gt;
[[Image:Page41-2.jpg]]&lt;br /&gt;
&lt;br /&gt;
== Mechanism ==&lt;br /&gt;
&lt;br /&gt;
[[Image:Mech1.jpg]] &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[Image:Toxin-1.jpg]]  figure 3: Mechanism of inactivation of elongation factor 2 (EF2) by diphtheria toxin &amp;lt;ref&amp;gt;Stephen, J., &amp;amp; Pietrowski, R. (1981). Bacterial toxins. (1 ed., p. 11). Washington: Van Nostrand Reinhold Co. Ltd. &amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Medical Implications &amp;amp; Possible Application ==&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039; is the causative agent of the disease [http://en.wikipedia.org/wiki/Diphtheria Diphtheria]. The lethal dose for humans and other susceptible eukarya is .1μg of toxin per kg of body weight&amp;lt;ref&amp;gt;Oram , D., &amp;amp; Holmes, R. (2006). Diphtheria toxin. (3 ed., pp. 245-252). Burlington, San Diego, London: Academic Press publications.&amp;lt;/ref&amp;gt;  A vaccine has been made and is routinely used in first world countries as a basic immunization. The vaccine is made up of formaldehyde-treated Diphtheria toxin. However, Diphtheria toxin has been used is many other medical applications such as the drug [http://en.wikipedia.org/wiki/Denileukin_diftitox Denileukin diftitox] and cancer suppressors. Denileukin diftitox is a protein that combines &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039; and [http://en.wikipedia.org/wiki/Interleukin-2 Interleukin 2]. In some  Leukemias and Lymphomas cells express Interleukin receptors in which the drug can bind to and release the toxin within the cells.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Another application that &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039; can be used for is a cancer suppressor. In terms of the R domain of the protein which as we know binds to pro-HB-EFG receptors of the surface of cells and is translocated into the cell by endocytosis. Some scientist have made a non-toxic mutant of diphtheria toxin CRM197 which is being used to block the signaling activity of the receptor. In some cancers such as ovarian cancer, pro-HB-EFG is overexpressed and blocking the signal has shown promise in suppressing the effects of pro-HB-EFG on cancer development.&amp;lt;ref&amp;gt;Oram , D., &amp;amp; Holmes, R. (2006). Diphtheria toxin. (3 ed., pp. 245-252). Burlington, San Diego, London: Academic Press publications.&amp;lt;/ref&amp;gt; Another example, is called [http://en.wikipedia.org/wiki/Immunotoxin immunotoxins] which change the R domain to recognize a specific cell surface and kill that cell. This is being tested against different cancer cell types and has been successful.&lt;br /&gt;
&lt;br /&gt;
== References ==&lt;br /&gt;
* Parker, M. (1996). Protein toxin structure. (1 ed., pp. 25-43). Georgetown: R.G. Landes Company.&lt;br /&gt;
&lt;br /&gt;
* Stephen, J., &amp;amp; Pietrowski, R. (1981). Bacterial toxins. (1 ed., p. 11). Washington: Van Nostrand Reinhold Co. Ltd.&lt;br /&gt;
&lt;br /&gt;
* Oram , D., &amp;amp; Holmes, R. (2006). Diphtheria toxin. (3 ed., pp. 245-252). Burlington, San Diego, London: Academic Press publications.&lt;br /&gt;
&lt;br /&gt;
* Diphtheria toxin. (2011, November 25). Retrieved from &amp;lt;http://en.wikipedia.org/wiki/Diphtheria_toxin&amp;gt;&lt;br /&gt;
&lt;br /&gt;
* Murphy JR (1996). &amp;quot;Corynebacterium Diphtheriae: Diphtheria Toxin Production&amp;quot;. In Baron S et al.. Medical microbiology (4 ed.). Galveston, Texas: Univ. of Texas Medical Branch. ISBN 0-9631172-1-1.&lt;br /&gt;
&lt;br /&gt;
=== Footnotes ===&lt;br /&gt;
{{reflist}}&lt;/div&gt;</summary>
		<author><name>Brittany Smith</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_486&amp;diff=1384062</id>
		<title>Sandbox Reserved 486</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_486&amp;diff=1384062"/>
		<updated>2012-05-02T04:36:05Z</updated>

		<summary type="html">&lt;p&gt;Brittany Smith: /* Structure */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Sandbox_Reserved_Robert_B_Rose_1}}&lt;br /&gt;
&amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
= Diphtheria toxin =&lt;br /&gt;
&#039;&#039;&#039;Diphtheria Toxin&#039;&#039;&#039; is an exotoxin produced by the organism [http://en.wikipedia.org/wiki/Corynebacterium_diphtheriae Corynebcterium diphtheria] which has been infected by a [http://en.wikipedia.org/wiki/Bacteriophage bacteriophage] that contains the Diphtheria toxin gene. The toxin is the causative agent of [http://en.wikipedia.org/wiki/Diphtheria diphtheria]. Symptoms for Diphtheria can range from a sore throat with low-grade fever and an adherent pseudomembrane of the tonsils, pharynx, or nose to  infected skin lesions which lack a characteristic appearance.&amp;lt;ref&amp;gt;http://www.cdc.gov/ncidod/dbmd/diseaseinfo/diptheria_t.htm &amp;lt;/ref&amp;gt; The toxin is distributed to distant organs by the circulatory system and may cause paralysis and congestive heart failure.&amp;lt;ref&amp;gt;http://www.ncbi.nlm.nih.gov/books/NBK7971/ &amp;lt;/ref&amp;gt;  The toxin attacks and kills eukaryotic cells by inactivating the [http://en.wikipedia.org/wiki/Elongation_factor Elongation factor] (&#039;&#039;&#039;EF-2&#039;&#039;&#039;) in translation. EF-2 allows for translocation of the peptidyl-tRNA from the A-site to the P-site, which in turn frees the A site for another aminoacyl-tRNA to bind. By inactivating the elongation factor 2 during translation the protein being made cannot be completed and therefore becomes nonfunctional. The toxin is in a &#039;&#039;&#039;class of A-B&#039;&#039;&#039; which includes cholera toxin, &#039;&#039;Escherichia coli&#039;&#039; heat labile enterotoxin, &#039;&#039;Pseudomonas aeruginosa&#039;&#039; exotoxin A, tetanus, botulinum neurotoxins, and Shiga toxin. A-B class is characterized by two functionally distinct components such as component A is the catalytic components while component B does the receptor binding function.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;Structure load=&#039;1mdt&#039; size=&#039;500&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;Diphtheria toxin structure&#039; scene=&#039;Insert optional scene name here&#039; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== History ==&lt;br /&gt;
Scientist have made efforts since at least the 1740&#039;s to find the caustion and cure for &#039;&#039;&#039;diphtheria toxin&#039;&#039;&#039;. It wasn&#039;t until Koch&#039;s devolpment of medical microbiology and [http://en.wikipedia.org/wiki/Koch&#039;s_postulates Koch&#039;s postulates] that it was even possible for progression towards understanding the molecular causes. It was later in Koch&#039;s laboratory that Friedrich Loeffler isolated a bacteria from a patient that died from &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039;. Koch and Friedrich later inoculated 23 guinea pigs with the isolated bacteria and they all died in two to five days. Loeffler had another observation that only the isolated bacteria from the pigs were growing at the site of inoculation. Therefore, he came to the conclusion that the bacteria isolated was the causation of the &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039;. In Pasture institute in Paris, both Emile Roux and Alexandre Yersin were able to isolate the toxin by growing a pure culture of &#039;&#039;Diphtheria bacilli&#039;&#039; and forcing them through a porcelain filter. This allowed to obtain no bacteria and only the toxin. The toxin was injected into laboratory animals and caused the same symptoms of &#039;&#039;Diphtheria bacilli&#039;&#039;. It wasn&#039;t until sixty-five years later that protein crystals were produced and the structure obtained. [http://en.wikipedia.org/wiki/Emil_Adolf_von_Behring Emil von Behring] published a paper with the discovery of diphtheria antitoxin one week after Koch found out the resistance gained by vaccination from &#039;&#039;Diphtheria bacilli&#039;&#039;. This lead to elimination of the disease diphtheria in developing countries.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Von Behring received a Nobel Prize for the antitoxin which later would be known as antibodies against &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039;. The next vaccine made was one mixed of toxin and antitoxin. The antitoxin relieved the harmful effects of the toxin which was the real vaccine. This was later replaced in 1923 with a vaccine of a formaldehyde-treated Diphtheria toxin. Today in developing countries people get routine vaccinations so that diphtheria is unknown.&lt;br /&gt;
&lt;br /&gt;
== Structure ==&lt;br /&gt;
&lt;br /&gt;
Diphtheria toxin is a protein made of 535 amino acids and is 58kDa in weight. The [http://en.wikipedia.org/wiki/Zymogen proenzyme](zymogen) must be cleaved into fragments A &amp;amp; B and reduced in order for the toxicity gene to be turn on. In each fragment there are two &amp;lt;scene name=&#039;Sandbox_Reserved_486/Disulfide_bonds/1&#039;&amp;gt;Disulfide Bonds&amp;lt;/scene&amp;gt;. There are also three domains C,T, and R that have different functions. The first crystal structure of the toxin was obtained in 1992 by x-ray crystallography. However, the structure was a dimer and generated by freezing the protein. The dimer is non-toxic but becomes a toxic monomer at neutral pH by dissociation. The &amp;lt;scene name=&#039;Sandbox_Reserved_486/Secondary_structure/1&#039;&amp;gt;Secondary Structure&amp;lt;/scene&amp;gt; of the molecule is made up of 24 helices, 31 beta sheets, and turns between each of them which adds up to be 535 residue protein. This makes for a mixture of &amp;lt;scene name=&#039;Sandbox_Reserved_486/Hydrophobic_hydrophilic/1&#039;&amp;gt;hydrophilic and hydrophobic areas&amp;lt;/scene&amp;gt; that allow for the seondary structure. The purple portion of the molecule is the polar ares while the gray was the hydrophobic areas. &lt;br /&gt;
&lt;br /&gt;
*&amp;lt;scene name=&#039;Sandbox_Reserved_486/Fragment_a/1&#039;&amp;gt;Fragment A&amp;lt;/scene&amp;gt; is about molecular mass of 21kDa  and is the catalytically active portion of the protein. &lt;br /&gt;
*&amp;lt;scene name=&#039;Sandbox_Reserved_486/Fragment_b/1&#039;&amp;gt;Fragment B&amp;lt;/scene&amp;gt; is about 37kDa and contains the receptor binding &amp;amp; translocation portions of the protein.&lt;br /&gt;
&lt;br /&gt;
The two fragments are then separated into three domains C, T, and R which correspond to three major functions of the toxin.&lt;br /&gt;
&lt;br /&gt;
*In fragment A contains domain C which contains the &amp;lt;scene name=&#039;Sandbox_Reserved_486/Active_site/1&#039;&amp;gt;Active site&amp;lt;/scene&amp;gt; and does the catalysis for the protein. It contains eight β strands and seven α helices.&lt;br /&gt;
&lt;br /&gt;
*The T domain is found in fragment B and is the translocation portion of the protein. The structure is made up of three layers of α helices. The outer layer contains 3 helices that are rich in polar residues that allow for the molecule to maintain the T domain as well as keeping the toxin soluble in neutral pH. &lt;br /&gt;
&lt;br /&gt;
*Another domain in fragment B is domain R which has the &amp;lt;scene name=&#039;Sandbox_Reserved_486/Receptor_binding_site/1&#039;&amp;gt;Receptor binding site&amp;lt;/scene&amp;gt; for the protein. The domain consist mostly of β sheets and changes conformation when interacting with cell membranes. In the R domain both Lsy516 and Phe530 play a role in recognizing receptors on cell surfaces.&lt;br /&gt;
&lt;br /&gt;
In the mechanism for Diphtheria toxin the R Domain binds to &amp;lt;scene name=&#039;Sandbox_Reserved_486/Ligands/2&#039;&amp;gt;ligands&amp;lt;/scene&amp;gt; which are NAD&amp;lt;sup&amp;gt;+&amp;lt;/sup&amp;gt; which can sometimes be switched with ApUp. The other ligand is the pro-HB-EFG which is binded when translocated into the cell by e&lt;br /&gt;
&lt;br /&gt;
== Mechanism ==&lt;br /&gt;
&lt;br /&gt;
[[Image:Mech1.jpg]] &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[Image:Toxin-1.jpg]]  figure 3: Mechanism of inactivation of elongation factor 2 (EF2) by diphtheria toxin &amp;lt;ref&amp;gt;Stephen, J., &amp;amp; Pietrowski, R. (1981). Bacterial toxins. (1 ed., p. 11). Washington: Van Nostrand Reinhold Co. Ltd. &amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Medical Implications &amp;amp; Possible Application ==&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039; is the causative agent of the disease [http://en.wikipedia.org/wiki/Diphtheria Diphtheria]. The lethal dose for humans and other susceptible eukarya is .1μg of toxin per kg of body weight&amp;lt;ref&amp;gt;Oram , D., &amp;amp; Holmes, R. (2006). Diphtheria toxin. (3 ed., pp. 245-252). Burlington, San Diego, London: Academic Press publications.&amp;lt;/ref&amp;gt;  A vaccine has been made and is routinely used in first world countries as a basic immunization. The vaccine is made up of formaldehyde-treated Diphtheria toxin. However, Diphtheria toxin has been used is many other medical applications such as the drug [http://en.wikipedia.org/wiki/Denileukin_diftitox Denileukin diftitox] and cancer suppressors. Denileukin diftitox is a protein that combines &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039; and [http://en.wikipedia.org/wiki/Interleukin-2 Interleukin 2]. In some  Leukemias and Lymphomas cells express Interleukin receptors in which the drug can bind to and release the toxin within the cells.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Another application that &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039; can be used for is a cancer suppressor. In terms of the R domain of the protein which as we know binds to pro-HB-EFG receptors of the surface of cells and is translocated into the cell by endocytosis. Some scientist have made a non-toxic mutant of diphtheria toxin CRM197 which is being used to block the signaling activity of the receptor. In some cancers such as ovarian cancer, pro-HB-EFG is overexpressed and blocking the signal has shown promise in suppressing the effects of pro-HB-EFG on cancer development.&amp;lt;ref&amp;gt;Oram , D., &amp;amp; Holmes, R. (2006). Diphtheria toxin. (3 ed., pp. 245-252). Burlington, San Diego, London: Academic Press publications.&amp;lt;/ref&amp;gt; Another example, is called [http://en.wikipedia.org/wiki/Immunotoxin immunotoxins] which change the R domain to recognize a specific cell surface and kill that cell. This is being tested against different cancer cell types and has been successful.&lt;br /&gt;
&lt;br /&gt;
== References ==&lt;br /&gt;
* Parker, M. (1996). Protein toxin structure. (1 ed., pp. 25-43). Georgetown: R.G. Landes Company.&lt;br /&gt;
&lt;br /&gt;
* Stephen, J., &amp;amp; Pietrowski, R. (1981). Bacterial toxins. (1 ed., p. 11). Washington: Van Nostrand Reinhold Co. Ltd.&lt;br /&gt;
&lt;br /&gt;
* Oram , D., &amp;amp; Holmes, R. (2006). Diphtheria toxin. (3 ed., pp. 245-252). Burlington, San Diego, London: Academic Press publications.&lt;br /&gt;
&lt;br /&gt;
* Diphtheria toxin. (2011, November 25). Retrieved from &amp;lt;http://en.wikipedia.org/wiki/Diphtheria_toxin&amp;gt;&lt;br /&gt;
&lt;br /&gt;
* Murphy JR (1996). &amp;quot;Corynebacterium Diphtheriae: Diphtheria Toxin Production&amp;quot;. In Baron S et al.. Medical microbiology (4 ed.). Galveston, Texas: Univ. of Texas Medical Branch. ISBN 0-9631172-1-1.&lt;br /&gt;
&lt;br /&gt;
=== Footnotes ===&lt;br /&gt;
{{reflist}}&lt;/div&gt;</summary>
		<author><name>Brittany Smith</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_486&amp;diff=1384061</id>
		<title>Sandbox Reserved 486</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_486&amp;diff=1384061"/>
		<updated>2012-05-02T04:33:20Z</updated>

		<summary type="html">&lt;p&gt;Brittany Smith: /* Structure */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Sandbox_Reserved_Robert_B_Rose_1}}&lt;br /&gt;
&amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
= Diphtheria toxin =&lt;br /&gt;
&#039;&#039;&#039;Diphtheria Toxin&#039;&#039;&#039; is an exotoxin produced by the organism [http://en.wikipedia.org/wiki/Corynebacterium_diphtheriae Corynebcterium diphtheria] which has been infected by a [http://en.wikipedia.org/wiki/Bacteriophage bacteriophage] that contains the Diphtheria toxin gene. The toxin is the causative agent of [http://en.wikipedia.org/wiki/Diphtheria diphtheria]. Symptoms for Diphtheria can range from a sore throat with low-grade fever and an adherent pseudomembrane of the tonsils, pharynx, or nose to  infected skin lesions which lack a characteristic appearance.&amp;lt;ref&amp;gt;http://www.cdc.gov/ncidod/dbmd/diseaseinfo/diptheria_t.htm &amp;lt;/ref&amp;gt; The toxin is distributed to distant organs by the circulatory system and may cause paralysis and congestive heart failure.&amp;lt;ref&amp;gt;http://www.ncbi.nlm.nih.gov/books/NBK7971/ &amp;lt;/ref&amp;gt;  The toxin attacks and kills eukaryotic cells by inactivating the [http://en.wikipedia.org/wiki/Elongation_factor Elongation factor] (&#039;&#039;&#039;EF-2&#039;&#039;&#039;) in translation. EF-2 allows for translocation of the peptidyl-tRNA from the A-site to the P-site, which in turn frees the A site for another aminoacyl-tRNA to bind. By inactivating the elongation factor 2 during translation the protein being made cannot be completed and therefore becomes nonfunctional. The toxin is in a &#039;&#039;&#039;class of A-B&#039;&#039;&#039; which includes cholera toxin, &#039;&#039;Escherichia coli&#039;&#039; heat labile enterotoxin, &#039;&#039;Pseudomonas aeruginosa&#039;&#039; exotoxin A, tetanus, botulinum neurotoxins, and Shiga toxin. A-B class is characterized by two functionally distinct components such as component A is the catalytic components while component B does the receptor binding function.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;Structure load=&#039;1mdt&#039; size=&#039;500&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;Diphtheria toxin structure&#039; scene=&#039;Insert optional scene name here&#039; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== History ==&lt;br /&gt;
Scientist have made efforts since at least the 1740&#039;s to find the caustion and cure for &#039;&#039;&#039;diphtheria toxin&#039;&#039;&#039;. It wasn&#039;t until Koch&#039;s devolpment of medical microbiology and [http://en.wikipedia.org/wiki/Koch&#039;s_postulates Koch&#039;s postulates] that it was even possible for progression towards understanding the molecular causes. It was later in Koch&#039;s laboratory that Friedrich Loeffler isolated a bacteria from a patient that died from &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039;. Koch and Friedrich later inoculated 23 guinea pigs with the isolated bacteria and they all died in two to five days. Loeffler had another observation that only the isolated bacteria from the pigs were growing at the site of inoculation. Therefore, he came to the conclusion that the bacteria isolated was the causation of the &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039;. In Pasture institute in Paris, both Emile Roux and Alexandre Yersin were able to isolate the toxin by growing a pure culture of &#039;&#039;Diphtheria bacilli&#039;&#039; and forcing them through a porcelain filter. This allowed to obtain no bacteria and only the toxin. The toxin was injected into laboratory animals and caused the same symptoms of &#039;&#039;Diphtheria bacilli&#039;&#039;. It wasn&#039;t until sixty-five years later that protein crystals were produced and the structure obtained. [http://en.wikipedia.org/wiki/Emil_Adolf_von_Behring Emil von Behring] published a paper with the discovery of diphtheria antitoxin one week after Koch found out the resistance gained by vaccination from &#039;&#039;Diphtheria bacilli&#039;&#039;. This lead to elimination of the disease diphtheria in developing countries.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Von Behring received a Nobel Prize for the antitoxin which later would be known as antibodies against &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039;. The next vaccine made was one mixed of toxin and antitoxin. The antitoxin relieved the harmful effects of the toxin which was the real vaccine. This was later replaced in 1923 with a vaccine of a formaldehyde-treated Diphtheria toxin. Today in developing countries people get routine vaccinations so that diphtheria is unknown.&lt;br /&gt;
&lt;br /&gt;
== Structure ==&lt;br /&gt;
&lt;br /&gt;
Diphtheria toxin is a protein made of 535 amino acids and is 58kDa in weight. The [http://en.wikipedia.org/wiki/Zymogen proenzyme](zymogen) must be cleaved into fragments A &amp;amp; B and reduced in order for the toxicity gene to be turn on. In each fragment there are two &amp;lt;scene name=&#039;Sandbox_Reserved_486/Disulfide_bonds/1&#039;&amp;gt;Disulfide Bonds&amp;lt;/scene&amp;gt;. There are also three domains C,T, and R that have different functions. The first crystal structure of the toxin was obtained in 1992 by x-ray crystallography. However, the structure was a dimer and generated by freezing the protein. The dimer is non-toxic but becomes a toxic monomer at neutral pH by dissociation. The &amp;lt;scene name=&#039;Sandbox_Reserved_486/Secondary_structure/1&#039;&amp;gt;Secondary Structure&amp;lt;/scene&amp;gt; of the molecule is made up of 24 helices, 31 beta sheets, and turns between each of them which adds up to be 535 residue protein. This makes for a mixture of &amp;lt;scene name=&#039;Sandbox_Reserved_486/Hydrophobic_hydrophilic/1&#039;&amp;gt;hydrophilic and hydrophobic areas&amp;lt;/scene&amp;gt; that allow for the seondary structure. The purple portion of the molecule is the polar ares while the gray was the hydrophobic areas. &lt;br /&gt;
&lt;br /&gt;
*&amp;lt;scene name=&#039;Sandbox_Reserved_486/Fragment_a/1&#039;&amp;gt;Fragment A&amp;lt;/scene&amp;gt; is about molecular mass of 21kDa  and is the catalytically active portion of the protein. &lt;br /&gt;
*&amp;lt;scene name=&#039;Sandbox_Reserved_486/Fragment_b/1&#039;&amp;gt;Fragment B&amp;lt;/scene&amp;gt; is about 37kDa and contains the receptor binding &amp;amp; translocation portions of the protein.&lt;br /&gt;
&lt;br /&gt;
The two fragments are then separated into three domains C, T, and R which correspond to three major functions of the toxin.&lt;br /&gt;
&lt;br /&gt;
*In fragment A contains domain C which contains the &amp;lt;scene name=&#039;Sandbox_Reserved_486/Active_site/1&#039;&amp;gt;Active site&amp;lt;/scene&amp;gt; and does the catalysis for the protein. It contains eight β strands and seven α helices.&lt;br /&gt;
&lt;br /&gt;
*The T domain is found in fragment B and is the translocation portion of the protein. The structure is made up of three layers of α helices. The outer layer contains 3 helices that are rich in polar residues that allow for the molecule to maintain the T domain as well as keeping the toxin soluble in neutral pH. &lt;br /&gt;
&lt;br /&gt;
*Another domain in fragment B is domain R which has the &amp;lt;scene name=&#039;Sandbox_Reserved_486/Receptor_binding_site/1&#039;&amp;gt;Receptor binding site&amp;lt;/scene&amp;gt; for the protein. The domain consist mostly of β sheets and changes conformation when interacting with cell membranes. In the R domain both Lsy516 and Phe530 play a role in recognizing receptors on cell surfaces.&lt;br /&gt;
&lt;br /&gt;
In the mechanism for Diphtheria toxin the R Domain binds to &amp;lt;scene name=&#039;Sandbox_Reserved_486/Ligands/2&#039;&amp;gt;ligands&amp;lt;/scene&amp;gt; which are NAD&amp;lt;sup&amp;gt;+&amp;lt;/sup&amp;gt; which can sometimes be switched with ApUp. The other ligand is the&lt;br /&gt;
&lt;br /&gt;
== Mechanism ==&lt;br /&gt;
&lt;br /&gt;
[[Image:Mech1.jpg]] &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[Image:Toxin-1.jpg]]  figure 3: Mechanism of inactivation of elongation factor 2 (EF2) by diphtheria toxin &amp;lt;ref&amp;gt;Stephen, J., &amp;amp; Pietrowski, R. (1981). Bacterial toxins. (1 ed., p. 11). Washington: Van Nostrand Reinhold Co. Ltd. &amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Medical Implications &amp;amp; Possible Application ==&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039; is the causative agent of the disease [http://en.wikipedia.org/wiki/Diphtheria Diphtheria]. The lethal dose for humans and other susceptible eukarya is .1μg of toxin per kg of body weight&amp;lt;ref&amp;gt;Oram , D., &amp;amp; Holmes, R. (2006). Diphtheria toxin. (3 ed., pp. 245-252). Burlington, San Diego, London: Academic Press publications.&amp;lt;/ref&amp;gt;  A vaccine has been made and is routinely used in first world countries as a basic immunization. The vaccine is made up of formaldehyde-treated Diphtheria toxin. However, Diphtheria toxin has been used is many other medical applications such as the drug [http://en.wikipedia.org/wiki/Denileukin_diftitox Denileukin diftitox] and cancer suppressors. Denileukin diftitox is a protein that combines &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039; and [http://en.wikipedia.org/wiki/Interleukin-2 Interleukin 2]. In some  Leukemias and Lymphomas cells express Interleukin receptors in which the drug can bind to and release the toxin within the cells.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Another application that &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039; can be used for is a cancer suppressor. In terms of the R domain of the protein which as we know binds to pro-HB-EFG receptors of the surface of cells and is translocated into the cell by endocytosis. Some scientist have made a non-toxic mutant of diphtheria toxin CRM197 which is being used to block the signaling activity of the receptor. In some cancers such as ovarian cancer, pro-HB-EFG is overexpressed and blocking the signal has shown promise in suppressing the effects of pro-HB-EFG on cancer development.&amp;lt;ref&amp;gt;Oram , D., &amp;amp; Holmes, R. (2006). Diphtheria toxin. (3 ed., pp. 245-252). Burlington, San Diego, London: Academic Press publications.&amp;lt;/ref&amp;gt; Another example, is called [http://en.wikipedia.org/wiki/Immunotoxin immunotoxins] which change the R domain to recognize a specific cell surface and kill that cell. This is being tested against different cancer cell types and has been successful.&lt;br /&gt;
&lt;br /&gt;
== References ==&lt;br /&gt;
* Parker, M. (1996). Protein toxin structure. (1 ed., pp. 25-43). Georgetown: R.G. Landes Company.&lt;br /&gt;
&lt;br /&gt;
* Stephen, J., &amp;amp; Pietrowski, R. (1981). Bacterial toxins. (1 ed., p. 11). Washington: Van Nostrand Reinhold Co. Ltd.&lt;br /&gt;
&lt;br /&gt;
* Oram , D., &amp;amp; Holmes, R. (2006). Diphtheria toxin. (3 ed., pp. 245-252). Burlington, San Diego, London: Academic Press publications.&lt;br /&gt;
&lt;br /&gt;
* Diphtheria toxin. (2011, November 25). Retrieved from &amp;lt;http://en.wikipedia.org/wiki/Diphtheria_toxin&amp;gt;&lt;br /&gt;
&lt;br /&gt;
* Murphy JR (1996). &amp;quot;Corynebacterium Diphtheriae: Diphtheria Toxin Production&amp;quot;. In Baron S et al.. Medical microbiology (4 ed.). Galveston, Texas: Univ. of Texas Medical Branch. ISBN 0-9631172-1-1.&lt;br /&gt;
&lt;br /&gt;
=== Footnotes ===&lt;br /&gt;
{{reflist}}&lt;/div&gt;</summary>
		<author><name>Brittany Smith</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_486&amp;diff=1384060</id>
		<title>Sandbox Reserved 486</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_486&amp;diff=1384060"/>
		<updated>2012-05-02T04:31:40Z</updated>

		<summary type="html">&lt;p&gt;Brittany Smith: /* Structure */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Sandbox_Reserved_Robert_B_Rose_1}}&lt;br /&gt;
&amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
= Diphtheria toxin =&lt;br /&gt;
&#039;&#039;&#039;Diphtheria Toxin&#039;&#039;&#039; is an exotoxin produced by the organism [http://en.wikipedia.org/wiki/Corynebacterium_diphtheriae Corynebcterium diphtheria] which has been infected by a [http://en.wikipedia.org/wiki/Bacteriophage bacteriophage] that contains the Diphtheria toxin gene. The toxin is the causative agent of [http://en.wikipedia.org/wiki/Diphtheria diphtheria]. Symptoms for Diphtheria can range from a sore throat with low-grade fever and an adherent pseudomembrane of the tonsils, pharynx, or nose to  infected skin lesions which lack a characteristic appearance.&amp;lt;ref&amp;gt;http://www.cdc.gov/ncidod/dbmd/diseaseinfo/diptheria_t.htm &amp;lt;/ref&amp;gt; The toxin is distributed to distant organs by the circulatory system and may cause paralysis and congestive heart failure.&amp;lt;ref&amp;gt;http://www.ncbi.nlm.nih.gov/books/NBK7971/ &amp;lt;/ref&amp;gt;  The toxin attacks and kills eukaryotic cells by inactivating the [http://en.wikipedia.org/wiki/Elongation_factor Elongation factor] (&#039;&#039;&#039;EF-2&#039;&#039;&#039;) in translation. EF-2 allows for translocation of the peptidyl-tRNA from the A-site to the P-site, which in turn frees the A site for another aminoacyl-tRNA to bind. By inactivating the elongation factor 2 during translation the protein being made cannot be completed and therefore becomes nonfunctional. The toxin is in a &#039;&#039;&#039;class of A-B&#039;&#039;&#039; which includes cholera toxin, &#039;&#039;Escherichia coli&#039;&#039; heat labile enterotoxin, &#039;&#039;Pseudomonas aeruginosa&#039;&#039; exotoxin A, tetanus, botulinum neurotoxins, and Shiga toxin. A-B class is characterized by two functionally distinct components such as component A is the catalytic components while component B does the receptor binding function.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;Structure load=&#039;1mdt&#039; size=&#039;500&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;Diphtheria toxin structure&#039; scene=&#039;Insert optional scene name here&#039; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== History ==&lt;br /&gt;
Scientist have made efforts since at least the 1740&#039;s to find the caustion and cure for &#039;&#039;&#039;diphtheria toxin&#039;&#039;&#039;. It wasn&#039;t until Koch&#039;s devolpment of medical microbiology and [http://en.wikipedia.org/wiki/Koch&#039;s_postulates Koch&#039;s postulates] that it was even possible for progression towards understanding the molecular causes. It was later in Koch&#039;s laboratory that Friedrich Loeffler isolated a bacteria from a patient that died from &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039;. Koch and Friedrich later inoculated 23 guinea pigs with the isolated bacteria and they all died in two to five days. Loeffler had another observation that only the isolated bacteria from the pigs were growing at the site of inoculation. Therefore, he came to the conclusion that the bacteria isolated was the causation of the &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039;. In Pasture institute in Paris, both Emile Roux and Alexandre Yersin were able to isolate the toxin by growing a pure culture of &#039;&#039;Diphtheria bacilli&#039;&#039; and forcing them through a porcelain filter. This allowed to obtain no bacteria and only the toxin. The toxin was injected into laboratory animals and caused the same symptoms of &#039;&#039;Diphtheria bacilli&#039;&#039;. It wasn&#039;t until sixty-five years later that protein crystals were produced and the structure obtained. [http://en.wikipedia.org/wiki/Emil_Adolf_von_Behring Emil von Behring] published a paper with the discovery of diphtheria antitoxin one week after Koch found out the resistance gained by vaccination from &#039;&#039;Diphtheria bacilli&#039;&#039;. This lead to elimination of the disease diphtheria in developing countries.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Von Behring received a Nobel Prize for the antitoxin which later would be known as antibodies against &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039;. The next vaccine made was one mixed of toxin and antitoxin. The antitoxin relieved the harmful effects of the toxin which was the real vaccine. This was later replaced in 1923 with a vaccine of a formaldehyde-treated Diphtheria toxin. Today in developing countries people get routine vaccinations so that diphtheria is unknown.&lt;br /&gt;
&lt;br /&gt;
== Structure ==&lt;br /&gt;
&lt;br /&gt;
Diphtheria toxin is a protein made of 535 amino acids and is 58kDa in weight. The [http://en.wikipedia.org/wiki/Zymogen proenzyme](zymogen) must be cleaved into fragments A &amp;amp; B and reduced in order for the toxicity gene to be turn on. In each fragment there are two &amp;lt;scene name=&#039;Sandbox_Reserved_486/Disulfide_bonds/1&#039;&amp;gt;Disulfide Bonds&amp;lt;/scene&amp;gt;. There are also three domains C,T, and R that have different functions. The first crystal structure of the toxin was obtained in 1992 by x-ray crystallography. However, the structure was a dimer and generated by freezing the protein. The dimer is non-toxic but becomes a toxic monomer at neutral pH by dissociation. The &amp;lt;scene name=&#039;Sandbox_Reserved_486/Secondary_structure/1&#039;&amp;gt;Secondary Structure&amp;lt;/scene&amp;gt; of the molecule is made up of 24 helices, 31 beta sheets, and turns between each of them which adds up to be 535 residue protein. This makes for a mixture of &amp;lt;scene name=&#039;Sandbox_Reserved_486/Hydrophobic_hydrophilic/1&#039;&amp;gt;hydrophilic and hydrophobic areas&amp;lt;/scene&amp;gt; that allow for the seondary structure. The purple portion of the molecule is the polar ares while the gray was the hydrophobic areas. &lt;br /&gt;
&lt;br /&gt;
*&amp;lt;scene name=&#039;Sandbox_Reserved_486/Fragment_a/1&#039;&amp;gt;Fragment A&amp;lt;/scene&amp;gt; is about molecular mass of 21kDa  and is the catalytically active portion of the protein. &lt;br /&gt;
*&amp;lt;scene name=&#039;Sandbox_Reserved_486/Fragment_b/1&#039;&amp;gt;Fragment B&amp;lt;/scene&amp;gt; is about 37kDa and contains the receptor binding &amp;amp; translocation portions of the protein.&lt;br /&gt;
&lt;br /&gt;
The two fragments are then separated into three domains C, T, and R which correspond to three major functions of the toxin.&lt;br /&gt;
&lt;br /&gt;
*In fragment A contains domain C which contains the &amp;lt;scene name=&#039;Sandbox_Reserved_486/Active_site/1&#039;&amp;gt;Active site&amp;lt;/scene&amp;gt; and does the catalysis for the protein. It contains eight β strands and seven α helices.&lt;br /&gt;
&lt;br /&gt;
*The T domain is found in fragment B and is the translocation portion of the protein. The structure is made up of three layers of α helices. The outer layer contains 3 helices that are rich in polar residues that allow for the molecule to maintain the T domain as well as keeping the toxin soluble in neutral pH. &lt;br /&gt;
&lt;br /&gt;
*Another domain in fragment B is domain R which has the &amp;lt;scene name=&#039;Sandbox_Reserved_486/Receptor_binding_site/1&#039;&amp;gt;Receptor binding site&amp;lt;/scene&amp;gt; for the protein. The domain consist mostly of β sheets and changes conformation when interacting with cell membranes. In the R domain both Lsy516 and Phe530 play a role in recognizing receptors on cell surfaces.&lt;br /&gt;
&lt;br /&gt;
In the mechanism for Diphtheria toxin the R Domain binds to &amp;lt;scene name=&#039;Sandbox_Reserved_486/Ligands/2&#039;&amp;gt;ligands&amp;lt;/scene&amp;gt; which are NAD&amp;lt;sup&amp;gt;+&amp;lt;/sup&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Mechanism ==&lt;br /&gt;
&lt;br /&gt;
[[Image:Mech1.jpg]] &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[Image:Toxin-1.jpg]]  figure 3: Mechanism of inactivation of elongation factor 2 (EF2) by diphtheria toxin &amp;lt;ref&amp;gt;Stephen, J., &amp;amp; Pietrowski, R. (1981). Bacterial toxins. (1 ed., p. 11). Washington: Van Nostrand Reinhold Co. Ltd. &amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Medical Implications &amp;amp; Possible Application ==&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039; is the causative agent of the disease [http://en.wikipedia.org/wiki/Diphtheria Diphtheria]. The lethal dose for humans and other susceptible eukarya is .1μg of toxin per kg of body weight&amp;lt;ref&amp;gt;Oram , D., &amp;amp; Holmes, R. (2006). Diphtheria toxin. (3 ed., pp. 245-252). Burlington, San Diego, London: Academic Press publications.&amp;lt;/ref&amp;gt;  A vaccine has been made and is routinely used in first world countries as a basic immunization. The vaccine is made up of formaldehyde-treated Diphtheria toxin. However, Diphtheria toxin has been used is many other medical applications such as the drug [http://en.wikipedia.org/wiki/Denileukin_diftitox Denileukin diftitox] and cancer suppressors. Denileukin diftitox is a protein that combines &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039; and [http://en.wikipedia.org/wiki/Interleukin-2 Interleukin 2]. In some  Leukemias and Lymphomas cells express Interleukin receptors in which the drug can bind to and release the toxin within the cells.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Another application that &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039; can be used for is a cancer suppressor. In terms of the R domain of the protein which as we know binds to pro-HB-EFG receptors of the surface of cells and is translocated into the cell by endocytosis. Some scientist have made a non-toxic mutant of diphtheria toxin CRM197 which is being used to block the signaling activity of the receptor. In some cancers such as ovarian cancer, pro-HB-EFG is overexpressed and blocking the signal has shown promise in suppressing the effects of pro-HB-EFG on cancer development.&amp;lt;ref&amp;gt;Oram , D., &amp;amp; Holmes, R. (2006). Diphtheria toxin. (3 ed., pp. 245-252). Burlington, San Diego, London: Academic Press publications.&amp;lt;/ref&amp;gt; Another example, is called [http://en.wikipedia.org/wiki/Immunotoxin immunotoxins] which change the R domain to recognize a specific cell surface and kill that cell. This is being tested against different cancer cell types and has been successful.&lt;br /&gt;
&lt;br /&gt;
== References ==&lt;br /&gt;
* Parker, M. (1996). Protein toxin structure. (1 ed., pp. 25-43). Georgetown: R.G. Landes Company.&lt;br /&gt;
&lt;br /&gt;
* Stephen, J., &amp;amp; Pietrowski, R. (1981). Bacterial toxins. (1 ed., p. 11). Washington: Van Nostrand Reinhold Co. Ltd.&lt;br /&gt;
&lt;br /&gt;
* Oram , D., &amp;amp; Holmes, R. (2006). Diphtheria toxin. (3 ed., pp. 245-252). Burlington, San Diego, London: Academic Press publications.&lt;br /&gt;
&lt;br /&gt;
* Diphtheria toxin. (2011, November 25). Retrieved from &amp;lt;http://en.wikipedia.org/wiki/Diphtheria_toxin&amp;gt;&lt;br /&gt;
&lt;br /&gt;
* Murphy JR (1996). &amp;quot;Corynebacterium Diphtheriae: Diphtheria Toxin Production&amp;quot;. In Baron S et al.. Medical microbiology (4 ed.). Galveston, Texas: Univ. of Texas Medical Branch. ISBN 0-9631172-1-1.&lt;br /&gt;
&lt;br /&gt;
=== Footnotes ===&lt;br /&gt;
{{reflist}}&lt;/div&gt;</summary>
		<author><name>Brittany Smith</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_486&amp;diff=1384059</id>
		<title>Sandbox Reserved 486</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_486&amp;diff=1384059"/>
		<updated>2012-05-02T04:30:44Z</updated>

		<summary type="html">&lt;p&gt;Brittany Smith: /* Structure */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Sandbox_Reserved_Robert_B_Rose_1}}&lt;br /&gt;
&amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
= Diphtheria toxin =&lt;br /&gt;
&#039;&#039;&#039;Diphtheria Toxin&#039;&#039;&#039; is an exotoxin produced by the organism [http://en.wikipedia.org/wiki/Corynebacterium_diphtheriae Corynebcterium diphtheria] which has been infected by a [http://en.wikipedia.org/wiki/Bacteriophage bacteriophage] that contains the Diphtheria toxin gene. The toxin is the causative agent of [http://en.wikipedia.org/wiki/Diphtheria diphtheria]. Symptoms for Diphtheria can range from a sore throat with low-grade fever and an adherent pseudomembrane of the tonsils, pharynx, or nose to  infected skin lesions which lack a characteristic appearance.&amp;lt;ref&amp;gt;http://www.cdc.gov/ncidod/dbmd/diseaseinfo/diptheria_t.htm &amp;lt;/ref&amp;gt; The toxin is distributed to distant organs by the circulatory system and may cause paralysis and congestive heart failure.&amp;lt;ref&amp;gt;http://www.ncbi.nlm.nih.gov/books/NBK7971/ &amp;lt;/ref&amp;gt;  The toxin attacks and kills eukaryotic cells by inactivating the [http://en.wikipedia.org/wiki/Elongation_factor Elongation factor] (&#039;&#039;&#039;EF-2&#039;&#039;&#039;) in translation. EF-2 allows for translocation of the peptidyl-tRNA from the A-site to the P-site, which in turn frees the A site for another aminoacyl-tRNA to bind. By inactivating the elongation factor 2 during translation the protein being made cannot be completed and therefore becomes nonfunctional. The toxin is in a &#039;&#039;&#039;class of A-B&#039;&#039;&#039; which includes cholera toxin, &#039;&#039;Escherichia coli&#039;&#039; heat labile enterotoxin, &#039;&#039;Pseudomonas aeruginosa&#039;&#039; exotoxin A, tetanus, botulinum neurotoxins, and Shiga toxin. A-B class is characterized by two functionally distinct components such as component A is the catalytic components while component B does the receptor binding function.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;Structure load=&#039;1mdt&#039; size=&#039;500&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;Diphtheria toxin structure&#039; scene=&#039;Insert optional scene name here&#039; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== History ==&lt;br /&gt;
Scientist have made efforts since at least the 1740&#039;s to find the caustion and cure for &#039;&#039;&#039;diphtheria toxin&#039;&#039;&#039;. It wasn&#039;t until Koch&#039;s devolpment of medical microbiology and [http://en.wikipedia.org/wiki/Koch&#039;s_postulates Koch&#039;s postulates] that it was even possible for progression towards understanding the molecular causes. It was later in Koch&#039;s laboratory that Friedrich Loeffler isolated a bacteria from a patient that died from &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039;. Koch and Friedrich later inoculated 23 guinea pigs with the isolated bacteria and they all died in two to five days. Loeffler had another observation that only the isolated bacteria from the pigs were growing at the site of inoculation. Therefore, he came to the conclusion that the bacteria isolated was the causation of the &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039;. In Pasture institute in Paris, both Emile Roux and Alexandre Yersin were able to isolate the toxin by growing a pure culture of &#039;&#039;Diphtheria bacilli&#039;&#039; and forcing them through a porcelain filter. This allowed to obtain no bacteria and only the toxin. The toxin was injected into laboratory animals and caused the same symptoms of &#039;&#039;Diphtheria bacilli&#039;&#039;. It wasn&#039;t until sixty-five years later that protein crystals were produced and the structure obtained. [http://en.wikipedia.org/wiki/Emil_Adolf_von_Behring Emil von Behring] published a paper with the discovery of diphtheria antitoxin one week after Koch found out the resistance gained by vaccination from &#039;&#039;Diphtheria bacilli&#039;&#039;. This lead to elimination of the disease diphtheria in developing countries.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Von Behring received a Nobel Prize for the antitoxin which later would be known as antibodies against &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039;. The next vaccine made was one mixed of toxin and antitoxin. The antitoxin relieved the harmful effects of the toxin which was the real vaccine. This was later replaced in 1923 with a vaccine of a formaldehyde-treated Diphtheria toxin. Today in developing countries people get routine vaccinations so that diphtheria is unknown.&lt;br /&gt;
&lt;br /&gt;
== Structure ==&lt;br /&gt;
&lt;br /&gt;
Diphtheria toxin is a protein made of 535 amino acids and is 58kDa in weight. The [http://en.wikipedia.org/wiki/Zymogen proenzyme](zymogen) must be cleaved into fragments A &amp;amp; B and reduced in order for the toxicity gene to be turn on. In each fragment there are two &amp;lt;scene name=&#039;Sandbox_Reserved_486/Disulfide_bonds/1&#039;&amp;gt;Disulfide Bonds&amp;lt;/scene&amp;gt;. There are also three domains C,T, and R that have different functions. The first crystal structure of the toxin was obtained in 1992 by x-ray crystallography. However, the structure was a dimer and generated by freezing the protein. The dimer is non-toxic but becomes a toxic monomer at neutral pH by dissociation. The &amp;lt;scene name=&#039;Sandbox_Reserved_486/Secondary_structure/1&#039;&amp;gt;Secondary Structure&amp;lt;/scene&amp;gt; of the molecule is made up of 24 helices, 31 beta sheets, and turns between each of them which adds up to be 535 residue protein. This makes for a mixture of &amp;lt;scene name=&#039;Sandbox_Reserved_486/Hydrophobic_hydrophilic/1&#039;&amp;gt;hydrophilic and hydrophobic areas&amp;lt;/scene&amp;gt; that allow for the seondary structure. The purple portion of the molecule is the polar ares while the gray was the hydrophobic areas. &lt;br /&gt;
&lt;br /&gt;
*&amp;lt;scene name=&#039;Sandbox_Reserved_486/Fragment_a/1&#039;&amp;gt;Fragment A&amp;lt;/scene&amp;gt; is about molecular mass of 21kDa  and is the catalytically active portion of the protein. &lt;br /&gt;
*&amp;lt;scene name=&#039;Sandbox_Reserved_486/Fragment_b/1&#039;&amp;gt;Fragment B&amp;lt;/scene&amp;gt; is about 37kDa and contains the receptor binding &amp;amp; translocation portions of the protein.&lt;br /&gt;
&lt;br /&gt;
The two fragments are then separated into three domains C, T, and R which correspond to three major functions of the toxin.&lt;br /&gt;
&lt;br /&gt;
*In fragment A contains domain C which contains the &amp;lt;scene name=&#039;Sandbox_Reserved_486/Active_site/1&#039;&amp;gt;Active site&amp;lt;/scene&amp;gt; and does the catalysis for the protein. It contains eight β strands and seven α helices.&lt;br /&gt;
&lt;br /&gt;
*The T domain is found in fragment B and is the translocation portion of the protein. The structure is made up of three layers of α helices. The outer layer contains 3 helices that are rich in polar residues that allow for the molecule to maintain the T domain as well as keeping the toxin soluble in neutral pH. &lt;br /&gt;
&lt;br /&gt;
*Another domain in fragment B is domain R which has the &amp;lt;scene name=&#039;Sandbox_Reserved_486/Receptor_binding_site/1&#039;&amp;gt;Receptor binding site&amp;lt;/scene&amp;gt; for the protein. The domain consist mostly of β sheets and changes conformation when interacting with cell membranes. In the R domain both Lsy516 and Phe530 play a role in recognizing receptors on cell surfaces.&lt;br /&gt;
&lt;br /&gt;
In the mechanism for Diphtheria toxin the R Domain binds to &amp;lt;scene name=&#039;Sandbox_Reserved_486/Ligands/2&#039;&amp;gt;ligands&amp;lt;/scene&amp;gt; which are NAD\textsuperscript{+}&lt;br /&gt;
&lt;br /&gt;
== Mechanism ==&lt;br /&gt;
&lt;br /&gt;
[[Image:Mech1.jpg]] &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[Image:Toxin-1.jpg]]  figure 3: Mechanism of inactivation of elongation factor 2 (EF2) by diphtheria toxin &amp;lt;ref&amp;gt;Stephen, J., &amp;amp; Pietrowski, R. (1981). Bacterial toxins. (1 ed., p. 11). Washington: Van Nostrand Reinhold Co. Ltd. &amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Medical Implications &amp;amp; Possible Application ==&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039; is the causative agent of the disease [http://en.wikipedia.org/wiki/Diphtheria Diphtheria]. The lethal dose for humans and other susceptible eukarya is .1μg of toxin per kg of body weight&amp;lt;ref&amp;gt;Oram , D., &amp;amp; Holmes, R. (2006). Diphtheria toxin. (3 ed., pp. 245-252). Burlington, San Diego, London: Academic Press publications.&amp;lt;/ref&amp;gt;  A vaccine has been made and is routinely used in first world countries as a basic immunization. The vaccine is made up of formaldehyde-treated Diphtheria toxin. However, Diphtheria toxin has been used is many other medical applications such as the drug [http://en.wikipedia.org/wiki/Denileukin_diftitox Denileukin diftitox] and cancer suppressors. Denileukin diftitox is a protein that combines &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039; and [http://en.wikipedia.org/wiki/Interleukin-2 Interleukin 2]. In some  Leukemias and Lymphomas cells express Interleukin receptors in which the drug can bind to and release the toxin within the cells.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Another application that &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039; can be used for is a cancer suppressor. In terms of the R domain of the protein which as we know binds to pro-HB-EFG receptors of the surface of cells and is translocated into the cell by endocytosis. Some scientist have made a non-toxic mutant of diphtheria toxin CRM197 which is being used to block the signaling activity of the receptor. In some cancers such as ovarian cancer, pro-HB-EFG is overexpressed and blocking the signal has shown promise in suppressing the effects of pro-HB-EFG on cancer development.&amp;lt;ref&amp;gt;Oram , D., &amp;amp; Holmes, R. (2006). Diphtheria toxin. (3 ed., pp. 245-252). Burlington, San Diego, London: Academic Press publications.&amp;lt;/ref&amp;gt; Another example, is called [http://en.wikipedia.org/wiki/Immunotoxin immunotoxins] which change the R domain to recognize a specific cell surface and kill that cell. This is being tested against different cancer cell types and has been successful.&lt;br /&gt;
&lt;br /&gt;
== References ==&lt;br /&gt;
* Parker, M. (1996). Protein toxin structure. (1 ed., pp. 25-43). Georgetown: R.G. Landes Company.&lt;br /&gt;
&lt;br /&gt;
* Stephen, J., &amp;amp; Pietrowski, R. (1981). Bacterial toxins. (1 ed., p. 11). Washington: Van Nostrand Reinhold Co. Ltd.&lt;br /&gt;
&lt;br /&gt;
* Oram , D., &amp;amp; Holmes, R. (2006). Diphtheria toxin. (3 ed., pp. 245-252). Burlington, San Diego, London: Academic Press publications.&lt;br /&gt;
&lt;br /&gt;
* Diphtheria toxin. (2011, November 25). Retrieved from &amp;lt;http://en.wikipedia.org/wiki/Diphtheria_toxin&amp;gt;&lt;br /&gt;
&lt;br /&gt;
* Murphy JR (1996). &amp;quot;Corynebacterium Diphtheriae: Diphtheria Toxin Production&amp;quot;. In Baron S et al.. Medical microbiology (4 ed.). Galveston, Texas: Univ. of Texas Medical Branch. ISBN 0-9631172-1-1.&lt;br /&gt;
&lt;br /&gt;
=== Footnotes ===&lt;br /&gt;
{{reflist}}&lt;/div&gt;</summary>
		<author><name>Brittany Smith</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_486&amp;diff=1384032</id>
		<title>Sandbox Reserved 486</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_486&amp;diff=1384032"/>
		<updated>2012-05-02T04:06:03Z</updated>

		<summary type="html">&lt;p&gt;Brittany Smith: /* Structure */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Sandbox_Reserved_Robert_B_Rose_1}}&lt;br /&gt;
&amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
= Diphtheria toxin =&lt;br /&gt;
&#039;&#039;&#039;Diphtheria Toxin&#039;&#039;&#039; is an exotoxin produced by the organism [http://en.wikipedia.org/wiki/Corynebacterium_diphtheriae Corynebcterium diphtheria] which has been infected by a [http://en.wikipedia.org/wiki/Bacteriophage bacteriophage] that contains the Diphtheria toxin gene. The toxin is the causative agent of [http://en.wikipedia.org/wiki/Diphtheria diphtheria]. Symptoms for Diphtheria can range from a sore throat with low-grade fever and an adherent pseudomembrane of the tonsils, pharynx, or nose to  infected skin lesions which lack a characteristic appearance.&amp;lt;ref&amp;gt;http://www.cdc.gov/ncidod/dbmd/diseaseinfo/diptheria_t.htm &amp;lt;/ref&amp;gt; The toxin is distributed to distant organs by the circulatory system and may cause paralysis and congestive heart failure.&amp;lt;ref&amp;gt;http://www.ncbi.nlm.nih.gov/books/NBK7971/ &amp;lt;/ref&amp;gt;  The toxin attacks and kills eukaryotic cells by inactivating the [http://en.wikipedia.org/wiki/Elongation_factor Elongation factor] (&#039;&#039;&#039;EF-2&#039;&#039;&#039;) in translation. EF-2 allows for translocation of the peptidyl-tRNA from the A-site to the P-site, which in turn frees the A site for another aminoacyl-tRNA to bind. By inactivating the elongation factor 2 during translation the protein being made cannot be completed and therefore becomes nonfunctional. The toxin is in a &#039;&#039;&#039;class of A-B&#039;&#039;&#039; which includes cholera toxin, &#039;&#039;Escherichia coli&#039;&#039; heat labile enterotoxin, &#039;&#039;Pseudomonas aeruginosa&#039;&#039; exotoxin A, tetanus, botulinum neurotoxins, and Shiga toxin. A-B class is characterized by two functionally distinct components such as component A is the catalytic components while component B does the receptor binding function.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;Structure load=&#039;1mdt&#039; size=&#039;500&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;Diphtheria toxin structure&#039; scene=&#039;Insert optional scene name here&#039; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== History ==&lt;br /&gt;
Scientist have made efforts since at least the 1740&#039;s to find the caustion and cure for &#039;&#039;&#039;diphtheria toxin&#039;&#039;&#039;. It wasn&#039;t until Koch&#039;s devolpment of medical microbiology and [http://en.wikipedia.org/wiki/Koch&#039;s_postulates Koch&#039;s postulates] that it was even possible for progression towards understanding the molecular causes. It was later in Koch&#039;s laboratory that Friedrich Loeffler isolated a bacteria from a patient that died from &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039;. Koch and Friedrich later inoculated 23 guinea pigs with the isolated bacteria and they all died in two to five days. Loeffler had another observation that only the isolated bacteria from the pigs were growing at the site of inoculation. Therefore, he came to the conclusion that the bacteria isolated was the causation of the &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039;. In Pasture institute in Paris, both Emile Roux and Alexandre Yersin were able to isolate the toxin by growing a pure culture of &#039;&#039;Diphtheria bacilli&#039;&#039; and forcing them through a porcelain filter. This allowed to obtain no bacteria and only the toxin. The toxin was injected into laboratory animals and caused the same symptoms of &#039;&#039;Diphtheria bacilli&#039;&#039;. It wasn&#039;t until sixty-five years later that protein crystals were produced and the structure obtained. [http://en.wikipedia.org/wiki/Emil_Adolf_von_Behring Emil von Behring] published a paper with the discovery of diphtheria antitoxin one week after Koch found out the resistance gained by vaccination from &#039;&#039;Diphtheria bacilli&#039;&#039;. This lead to elimination of the disease diphtheria in developing countries.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Von Behring received a Nobel Prize for the antitoxin which later would be known as antibodies against &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039;. The next vaccine made was one mixed of toxin and antitoxin. The antitoxin relieved the harmful effects of the toxin which was the real vaccine. This was later replaced in 1923 with a vaccine of a formaldehyde-treated Diphtheria toxin. Today in developing countries people get routine vaccinations so that diphtheria is unknown.&lt;br /&gt;
&lt;br /&gt;
== Structure ==&lt;br /&gt;
&lt;br /&gt;
Diphtheria toxin is a protein made of 535 amino acids and is 58kDa in weight. The [http://en.wikipedia.org/wiki/Zymogen proenzyme](zymogen) must be cleaved into fragments A &amp;amp; B and reduced in order for the toxicity gene to be turn on. In each fragment there are two &amp;lt;scene name=&#039;Sandbox_Reserved_486/Disulfide_bonds/1&#039;&amp;gt;Disulfide Bonds&amp;lt;/scene&amp;gt;. There are also three domains C,T, and R that have different functions. The first crystal structure of the toxin was obtained in 1992 by x-ray crystallography. However, the structure was a dimer and generated by freezing the protein. The dimer is non-toxic but becomes a toxic monomer at neutral pH by dissociation. The &amp;lt;scene name=&#039;Sandbox_Reserved_486/Secondary_structure/1&#039;&amp;gt;Secondary Structure&amp;lt;/scene&amp;gt; of the molecule is made up of 24 helices, 31 beta sheets, and turns between each of them which adds up to be 535 residue protein. This makes for a mixture of &amp;lt;scene name=&#039;Sandbox_Reserved_486/Hydrophobic_hydrophilic/1&#039;&amp;gt;hydrophilic and hydrophobic areas&amp;lt;/scene&amp;gt; that allow for the seondary structure. The purple portion of the molecule is the polar ares while the gray was the hydrophobic areas. &lt;br /&gt;
&lt;br /&gt;
*&amp;lt;scene name=&#039;Sandbox_Reserved_486/Fragment_a/1&#039;&amp;gt;Fragment A&amp;lt;/scene&amp;gt; is about molecular mass of 21kDa  and is the catalytically active portion of the protein. &lt;br /&gt;
*&amp;lt;scene name=&#039;Sandbox_Reserved_486/Fragment_b/1&#039;&amp;gt;Fragment B&amp;lt;/scene&amp;gt; is about 37kDa and contains the receptor binding &amp;amp; translocation portions of the protein.&lt;br /&gt;
&lt;br /&gt;
The two fragments are then separated into three domains C, T, and R which correspond to three major functions of the toxin.&lt;br /&gt;
&lt;br /&gt;
*In fragment A contains domain C which contains the &amp;lt;scene name=&#039;Sandbox_Reserved_486/Active_site/1&#039;&amp;gt;Active site&amp;lt;/scene&amp;gt; and does the catalysis for the protein. It contains eight β strands and seven α helices.&lt;br /&gt;
&lt;br /&gt;
*The T domain is found in fragment B and is the translocation portion of the protein. The structure is made up of three layers of α helices. The outer layer contains 3 helices that are rich in polar residues that allow for the molecule to maintain the T domain as well as keeping the toxin soluble in neutral pH. &lt;br /&gt;
&lt;br /&gt;
*Another domain in fragment B is domain R which has the &amp;lt;scene name=&#039;Sandbox_Reserved_486/Receptor_binding_site/1&#039;&amp;gt;Receptor binding site&amp;lt;/scene&amp;gt; for the protein. The domain consist mostly of β sheets and changes conformation when interacting with cell membranes. In the R domain both Lsy516 and Phe530 play a role in recognizing receptors on cell surfaces.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;scene name=&#039;Sandbox_Reserved_486/Ligands/2&#039;&amp;gt;Ligand&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Mechanism ==&lt;br /&gt;
&lt;br /&gt;
[[Image:Mech1.jpg]] &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[Image:Toxin-1.jpg]]  figure 3: Mechanism of inactivation of elongation factor 2 (EF2) by diphtheria toxin &amp;lt;ref&amp;gt;Stephen, J., &amp;amp; Pietrowski, R. (1981). Bacterial toxins. (1 ed., p. 11). Washington: Van Nostrand Reinhold Co. Ltd. &amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Medical Implications &amp;amp; Possible Application ==&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039; is the causative agent of the disease [http://en.wikipedia.org/wiki/Diphtheria Diphtheria]. The lethal dose for humans and other susceptible eukarya is .1μg of toxin per kg of body weight&amp;lt;ref&amp;gt;Oram , D., &amp;amp; Holmes, R. (2006). Diphtheria toxin. (3 ed., pp. 245-252). Burlington, San Diego, London: Academic Press publications.&amp;lt;/ref&amp;gt;  A vaccine has been made and is routinely used in first world countries as a basic immunization. The vaccine is made up of formaldehyde-treated Diphtheria toxin. However, Diphtheria toxin has been used is many other medical applications such as the drug [http://en.wikipedia.org/wiki/Denileukin_diftitox Denileukin diftitox] and cancer suppressors. Denileukin diftitox is a protein that combines &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039; and [http://en.wikipedia.org/wiki/Interleukin-2 Interleukin 2]. In some  Leukemias and Lymphomas cells express Interleukin receptors in which the drug can bind to and release the toxin within the cells.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Another application that &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039; can be used for is a cancer suppressor. In terms of the R domain of the protein which as we know binds to pro-HB-EFG receptors of the surface of cells and is translocated into the cell by endocytosis. Some scientist have made a non-toxic mutant of diphtheria toxin CRM197 which is being used to block the signaling activity of the receptor. In some cancers such as ovarian cancer, pro-HB-EFG is overexpressed and blocking the signal has shown promise in suppressing the effects of pro-HB-EFG on cancer development.&amp;lt;ref&amp;gt;Oram , D., &amp;amp; Holmes, R. (2006). Diphtheria toxin. (3 ed., pp. 245-252). Burlington, San Diego, London: Academic Press publications.&amp;lt;/ref&amp;gt; Another example, is called [http://en.wikipedia.org/wiki/Immunotoxin immunotoxins] which change the R domain to recognize a specific cell surface and kill that cell. This is being tested against different cancer cell types and has been successful.&lt;br /&gt;
&lt;br /&gt;
== References ==&lt;br /&gt;
* Parker, M. (1996). Protein toxin structure. (1 ed., pp. 25-43). Georgetown: R.G. Landes Company.&lt;br /&gt;
&lt;br /&gt;
* Stephen, J., &amp;amp; Pietrowski, R. (1981). Bacterial toxins. (1 ed., p. 11). Washington: Van Nostrand Reinhold Co. Ltd.&lt;br /&gt;
&lt;br /&gt;
* Oram , D., &amp;amp; Holmes, R. (2006). Diphtheria toxin. (3 ed., pp. 245-252). Burlington, San Diego, London: Academic Press publications.&lt;br /&gt;
&lt;br /&gt;
* Diphtheria toxin. (2011, November 25). Retrieved from &amp;lt;http://en.wikipedia.org/wiki/Diphtheria_toxin&amp;gt;&lt;br /&gt;
&lt;br /&gt;
* Murphy JR (1996). &amp;quot;Corynebacterium Diphtheriae: Diphtheria Toxin Production&amp;quot;. In Baron S et al.. Medical microbiology (4 ed.). Galveston, Texas: Univ. of Texas Medical Branch. ISBN 0-9631172-1-1.&lt;br /&gt;
&lt;br /&gt;
=== Footnotes ===&lt;br /&gt;
{{reflist}}&lt;/div&gt;</summary>
		<author><name>Brittany Smith</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_486&amp;diff=1384003</id>
		<title>Sandbox Reserved 486</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_486&amp;diff=1384003"/>
		<updated>2012-05-02T03:52:23Z</updated>

		<summary type="html">&lt;p&gt;Brittany Smith: /* Structure */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Sandbox_Reserved_Robert_B_Rose_1}}&lt;br /&gt;
&amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
= Diphtheria toxin =&lt;br /&gt;
&#039;&#039;&#039;Diphtheria Toxin&#039;&#039;&#039; is an exotoxin produced by the organism [http://en.wikipedia.org/wiki/Corynebacterium_diphtheriae Corynebcterium diphtheria] which has been infected by a [http://en.wikipedia.org/wiki/Bacteriophage bacteriophage] that contains the Diphtheria toxin gene. The toxin is the causative agent of [http://en.wikipedia.org/wiki/Diphtheria diphtheria]. Symptoms for Diphtheria can range from a sore throat with low-grade fever and an adherent pseudomembrane of the tonsils, pharynx, or nose to  infected skin lesions which lack a characteristic appearance.&amp;lt;ref&amp;gt;http://www.cdc.gov/ncidod/dbmd/diseaseinfo/diptheria_t.htm &amp;lt;/ref&amp;gt; The toxin is distributed to distant organs by the circulatory system and may cause paralysis and congestive heart failure.&amp;lt;ref&amp;gt;http://www.ncbi.nlm.nih.gov/books/NBK7971/ &amp;lt;/ref&amp;gt;  The toxin attacks and kills eukaryotic cells by inactivating the [http://en.wikipedia.org/wiki/Elongation_factor Elongation factor] (&#039;&#039;&#039;EF-2&#039;&#039;&#039;) in translation. EF-2 allows for translocation of the peptidyl-tRNA from the A-site to the P-site, which in turn frees the A site for another aminoacyl-tRNA to bind. By inactivating the elongation factor 2 during translation the protein being made cannot be completed and therefore becomes nonfunctional. The toxin is in a &#039;&#039;&#039;class of A-B&#039;&#039;&#039; which includes cholera toxin, &#039;&#039;Escherichia coli&#039;&#039; heat labile enterotoxin, &#039;&#039;Pseudomonas aeruginosa&#039;&#039; exotoxin A, tetanus, botulinum neurotoxins, and Shiga toxin. A-B class is characterized by two functionally distinct components such as component A is the catalytic components while component B does the receptor binding function.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;Structure load=&#039;1mdt&#039; size=&#039;500&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;Diphtheria toxin structure&#039; scene=&#039;Insert optional scene name here&#039; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== History ==&lt;br /&gt;
Scientist have made efforts since at least the 1740&#039;s to find the caustion and cure for &#039;&#039;&#039;diphtheria toxin&#039;&#039;&#039;. It wasn&#039;t until Koch&#039;s devolpment of medical microbiology and [http://en.wikipedia.org/wiki/Koch&#039;s_postulates Koch&#039;s postulates] that it was even possible for progression towards understanding the molecular causes. It was later in Koch&#039;s laboratory that Friedrich Loeffler isolated a bacteria from a patient that died from &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039;. Koch and Friedrich later inoculated 23 guinea pigs with the isolated bacteria and they all died in two to five days. Loeffler had another observation that only the isolated bacteria from the pigs were growing at the site of inoculation. Therefore, he came to the conclusion that the bacteria isolated was the causation of the &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039;. In Pasture institute in Paris, both Emile Roux and Alexandre Yersin were able to isolate the toxin by growing a pure culture of &#039;&#039;Diphtheria bacilli&#039;&#039; and forcing them through a porcelain filter. This allowed to obtain no bacteria and only the toxin. The toxin was injected into laboratory animals and caused the same symptoms of &#039;&#039;Diphtheria bacilli&#039;&#039;. It wasn&#039;t until sixty-five years later that protein crystals were produced and the structure obtained. [http://en.wikipedia.org/wiki/Emil_Adolf_von_Behring Emil von Behring] published a paper with the discovery of diphtheria antitoxin one week after Koch found out the resistance gained by vaccination from &#039;&#039;Diphtheria bacilli&#039;&#039;. This lead to elimination of the disease diphtheria in developing countries.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Von Behring received a Nobel Prize for the antitoxin which later would be known as antibodies against &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039;. The next vaccine made was one mixed of toxin and antitoxin. The antitoxin relieved the harmful effects of the toxin which was the real vaccine. This was later replaced in 1923 with a vaccine of a formaldehyde-treated Diphtheria toxin. Today in developing countries people get routine vaccinations so that diphtheria is unknown.&lt;br /&gt;
&lt;br /&gt;
== Structure ==&lt;br /&gt;
&lt;br /&gt;
Diphtheria toxin is a protein made of 535 amino acids and is 58kDa in weight. The [http://en.wikipedia.org/wiki/Zymogen proenzyme](zymogen) must be cleaved into fragments A &amp;amp; B and reduced in order for the toxicity gene to be turn on. In each fragment there are two &amp;lt;scene name=&#039;Sandbox_Reserved_486/Disulfide_bonds/1&#039;&amp;gt;Disulfide Bonds&amp;lt;/scene&amp;gt;. There are also three domains C,T, and R that have different functions. The first crystal structure of the toxin was obtained in 1992 by x-ray crystallography. However, the structure was a dimer and generated by freezing the protein. The dimer is non-toxic but becomes a toxic monomer at neutral pH by dissociation.&lt;br /&gt;
&lt;br /&gt;
*&amp;lt;scene name=&#039;Sandbox_Reserved_486/Fragment_a/1&#039;&amp;gt;Fragment A&amp;lt;/scene&amp;gt; is about molecular mass of 21kDa  and is the catalytically active portion of the protein. &lt;br /&gt;
*&amp;lt;scene name=&#039;Sandbox_Reserved_486/Fragment_b/1&#039;&amp;gt;Fragment B&amp;lt;/scene&amp;gt; is about 37kDa and contains the receptor binding &amp;amp; translocation portions of the protein.&lt;br /&gt;
&lt;br /&gt;
The two fragments are then separated into three domains C, T, and R which correspond to three major functions of the toxin.&lt;br /&gt;
&lt;br /&gt;
*In fragment A contains domain C which contains the &amp;lt;scene name=&#039;Sandbox_Reserved_486/Active_site/1&#039;&amp;gt;Active site&amp;lt;/scene&amp;gt; and does the catalysis for the protein. It contains eight β strands and seven α helices.&lt;br /&gt;
&lt;br /&gt;
*The T domain is found in fragment B and is the translocation portion of the protein. The structure is made up of three layers of α helices. The outer layer contains 3 helices that are rich in polar residues that allow for the molecule to maintain the T domain as well as keeping the toxin soluble in neutral pH. &lt;br /&gt;
&lt;br /&gt;
*Another domain in fragment B is domain R which has the &amp;lt;scene name=&#039;Sandbox_Reserved_486/Receptor_binding_site/1&#039;&amp;gt;Receptor binding site&amp;lt;/scene&amp;gt; for the protein. The domain consist mostly of β sheets and changes conformation when interacting with cell membranes. In the R domain both Lsy516 and Phe530 play a role in recognizing receptors on cell surfaces.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;scene name=&#039;Sandbox_Reserved_486/Ligands/2&#039;&amp;gt;Ligand&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;scene name=&#039;Sandbox_Reserved_486/Hydrophobic_hydrophilic/1&#039;&amp;gt;the purple is the polar areas while the gray is hydrophobic areas&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;scene name=&#039;Sandbox_Reserved_486/Secondary_structure/1&#039;&amp;gt;Secondary Structure&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Mechanism ==&lt;br /&gt;
&lt;br /&gt;
[[Image:Mech1.jpg]] &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[Image:Toxin-1.jpg]]  figure 3: Mechanism of inactivation of elongation factor 2 (EF2) by diphtheria toxin &amp;lt;ref&amp;gt;Stephen, J., &amp;amp; Pietrowski, R. (1981). Bacterial toxins. (1 ed., p. 11). Washington: Van Nostrand Reinhold Co. Ltd. &amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Medical Implications &amp;amp; Possible Application ==&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039; is the causative agent of the disease [http://en.wikipedia.org/wiki/Diphtheria Diphtheria]. The lethal dose for humans and other susceptible eukarya is .1μg of toxin per kg of body weight&amp;lt;ref&amp;gt;Oram , D., &amp;amp; Holmes, R. (2006). Diphtheria toxin. (3 ed., pp. 245-252). Burlington, San Diego, London: Academic Press publications.&amp;lt;/ref&amp;gt;  A vaccine has been made and is routinely used in first world countries as a basic immunization. The vaccine is made up of formaldehyde-treated Diphtheria toxin. However, Diphtheria toxin has been used is many other medical applications such as the drug [http://en.wikipedia.org/wiki/Denileukin_diftitox Denileukin diftitox] and cancer suppressors. Denileukin diftitox is a protein that combines &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039; and [http://en.wikipedia.org/wiki/Interleukin-2 Interleukin 2]. In some  Leukemias and Lymphomas cells express Interleukin receptors in which the drug can bind to and release the toxin within the cells.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Another application that &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039; can be used for is a cancer suppressor. In terms of the R domain of the protein which as we know binds to pro-HB-EFG receptors of the surface of cells and is translocated into the cell by endocytosis. Some scientist have made a non-toxic mutant of diphtheria toxin CRM197 which is being used to block the signaling activity of the receptor. In some cancers such as ovarian cancer, pro-HB-EFG is overexpressed and blocking the signal has shown promise in suppressing the effects of pro-HB-EFG on cancer development.&amp;lt;ref&amp;gt;Oram , D., &amp;amp; Holmes, R. (2006). Diphtheria toxin. (3 ed., pp. 245-252). Burlington, San Diego, London: Academic Press publications.&amp;lt;/ref&amp;gt; Another example, is called [http://en.wikipedia.org/wiki/Immunotoxin immunotoxins] which change the R domain to recognize a specific cell surface and kill that cell. This is being tested against different cancer cell types and has been successful.&lt;br /&gt;
&lt;br /&gt;
== References ==&lt;br /&gt;
* Parker, M. (1996). Protein toxin structure. (1 ed., pp. 25-43). Georgetown: R.G. Landes Company.&lt;br /&gt;
&lt;br /&gt;
* Stephen, J., &amp;amp; Pietrowski, R. (1981). Bacterial toxins. (1 ed., p. 11). Washington: Van Nostrand Reinhold Co. Ltd.&lt;br /&gt;
&lt;br /&gt;
* Oram , D., &amp;amp; Holmes, R. (2006). Diphtheria toxin. (3 ed., pp. 245-252). Burlington, San Diego, London: Academic Press publications.&lt;br /&gt;
&lt;br /&gt;
* Diphtheria toxin. (2011, November 25). Retrieved from &amp;lt;http://en.wikipedia.org/wiki/Diphtheria_toxin&amp;gt;&lt;br /&gt;
&lt;br /&gt;
* Murphy JR (1996). &amp;quot;Corynebacterium Diphtheriae: Diphtheria Toxin Production&amp;quot;. In Baron S et al.. Medical microbiology (4 ed.). Galveston, Texas: Univ. of Texas Medical Branch. ISBN 0-9631172-1-1.&lt;br /&gt;
&lt;br /&gt;
=== Footnotes ===&lt;br /&gt;
{{reflist}}&lt;/div&gt;</summary>
		<author><name>Brittany Smith</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_486&amp;diff=1383984</id>
		<title>Sandbox Reserved 486</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_486&amp;diff=1383984"/>
		<updated>2012-05-02T03:41:39Z</updated>

		<summary type="html">&lt;p&gt;Brittany Smith: /* Structure */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Sandbox_Reserved_Robert_B_Rose_1}}&lt;br /&gt;
&amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
= Diphtheria toxin =&lt;br /&gt;
&#039;&#039;&#039;Diphtheria Toxin&#039;&#039;&#039; is an exotoxin produced by the organism [http://en.wikipedia.org/wiki/Corynebacterium_diphtheriae Corynebcterium diphtheria] which has been infected by a [http://en.wikipedia.org/wiki/Bacteriophage bacteriophage] that contains the Diphtheria toxin gene. The toxin is the causative agent of [http://en.wikipedia.org/wiki/Diphtheria diphtheria]. Symptoms for Diphtheria can range from a sore throat with low-grade fever and an adherent pseudomembrane of the tonsils, pharynx, or nose to  infected skin lesions which lack a characteristic appearance.&amp;lt;ref&amp;gt;http://www.cdc.gov/ncidod/dbmd/diseaseinfo/diptheria_t.htm &amp;lt;/ref&amp;gt; The toxin is distributed to distant organs by the circulatory system and may cause paralysis and congestive heart failure.&amp;lt;ref&amp;gt;http://www.ncbi.nlm.nih.gov/books/NBK7971/ &amp;lt;/ref&amp;gt;  The toxin attacks and kills eukaryotic cells by inactivating the [http://en.wikipedia.org/wiki/Elongation_factor Elongation factor] (&#039;&#039;&#039;EF-2&#039;&#039;&#039;) in translation. EF-2 allows for translocation of the peptidyl-tRNA from the A-site to the P-site, which in turn frees the A site for another aminoacyl-tRNA to bind. By inactivating the elongation factor 2 during translation the protein being made cannot be completed and therefore becomes nonfunctional. The toxin is in a &#039;&#039;&#039;class of A-B&#039;&#039;&#039; which includes cholera toxin, &#039;&#039;Escherichia coli&#039;&#039; heat labile enterotoxin, &#039;&#039;Pseudomonas aeruginosa&#039;&#039; exotoxin A, tetanus, botulinum neurotoxins, and Shiga toxin. A-B class is characterized by two functionally distinct components such as component A is the catalytic components while component B does the receptor binding function.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;Structure load=&#039;1mdt&#039; size=&#039;500&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;Diphtheria toxin structure&#039; scene=&#039;Insert optional scene name here&#039; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== History ==&lt;br /&gt;
Scientist have made efforts since at least the 1740&#039;s to find the caustion and cure for &#039;&#039;&#039;diphtheria toxin&#039;&#039;&#039;. It wasn&#039;t until Koch&#039;s devolpment of medical microbiology and [http://en.wikipedia.org/wiki/Koch&#039;s_postulates Koch&#039;s postulates] that it was even possible for progression towards understanding the molecular causes. It was later in Koch&#039;s laboratory that Friedrich Loeffler isolated a bacteria from a patient that died from &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039;. Koch and Friedrich later inoculated 23 guinea pigs with the isolated bacteria and they all died in two to five days. Loeffler had another observation that only the isolated bacteria from the pigs were growing at the site of inoculation. Therefore, he came to the conclusion that the bacteria isolated was the causation of the &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039;. In Pasture institute in Paris, both Emile Roux and Alexandre Yersin were able to isolate the toxin by growing a pure culture of &#039;&#039;Diphtheria bacilli&#039;&#039; and forcing them through a porcelain filter. This allowed to obtain no bacteria and only the toxin. The toxin was injected into laboratory animals and caused the same symptoms of &#039;&#039;Diphtheria bacilli&#039;&#039;. It wasn&#039;t until sixty-five years later that protein crystals were produced and the structure obtained. [http://en.wikipedia.org/wiki/Emil_Adolf_von_Behring Emil von Behring] published a paper with the discovery of diphtheria antitoxin one week after Koch found out the resistance gained by vaccination from &#039;&#039;Diphtheria bacilli&#039;&#039;. This lead to elimination of the disease diphtheria in developing countries.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Von Behring received a Nobel Prize for the antitoxin which later would be known as antibodies against &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039;. The next vaccine made was one mixed of toxin and antitoxin. The antitoxin relieved the harmful effects of the toxin which was the real vaccine. This was later replaced in 1923 with a vaccine of a formaldehyde-treated Diphtheria toxin. Today in developing countries people get routine vaccinations so that diphtheria is unknown.&lt;br /&gt;
&lt;br /&gt;
== Structure ==&lt;br /&gt;
&lt;br /&gt;
Diphtheria toxin is a protein made of 535 amino acids and is 58kDa in weight. The [http://en.wikipedia.org/wiki/Zymogen proenzyme](zymogen) must be cleaved into fragments A &amp;amp; B and reduced in order for the toxicity gene to be turn on. In each fragment there are two &amp;lt;scene name=&#039;Sandbox_Reserved_486/Disulfide_bonds/1&#039;&amp;gt;Disulfide Bonds&amp;lt;/scene&amp;gt;. There are also three domains C,T, and R that have different functions. The first crystal structure of the toxin was obtained in 1992 by x-ray crystallography. However, the structure was a dimer and generated by freezing the protein. The dimer is non-toxic but becomes a toxic monomer at neutral pH by dissociation.&lt;br /&gt;
&lt;br /&gt;
*&amp;lt;scene name=&#039;Sandbox_Reserved_486/Fragment_a/1&#039;&amp;gt;Fragment A&amp;lt;/scene&amp;gt; is about molecular mass of 21kDa  and is the catalytically active portion of the protein. &lt;br /&gt;
*&amp;lt;scene name=&#039;Sandbox_Reserved_486/Fragment_b/1&#039;&amp;gt;Fragment B&amp;lt;/scene&amp;gt; is about 37kDa and contains the receptor binding &amp;amp; translocation portions of the protein.&lt;br /&gt;
&lt;br /&gt;
The two fragments are then separated into three domains C, T, and R which correspond to three major functions of the toxin.&lt;br /&gt;
&lt;br /&gt;
*In fragment A contains domain C which contains the &amp;lt;scene name=&#039;Sandbox_Reserved_486/Active_site/1&#039;&amp;gt;Active site&amp;lt;/scene&amp;gt; and does the catalysis for the protein. It contains eight β strands and seven α helices.&lt;br /&gt;
&lt;br /&gt;
*The T domain is found in fragment B and is the translocation portion of the protein. The structure is made up of three layers of α helices. The outer layer contains 3 helices that are rich in polar residues that allow for the molecule to maintain the T domain as well as keeping the toxin soluble in neutral pH. &lt;br /&gt;
&lt;br /&gt;
*&lt;br /&gt;
&lt;br /&gt;
&amp;lt;scene name=&#039;Sandbox_Reserved_486/Ligands/2&#039;&amp;gt;Ligand&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;scene name=&#039;Sandbox_Reserved_486/Hydrophobic_hydrophilic/1&#039;&amp;gt;the purple is the polar areas while the gray is hydrophobic areas&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;scene name=&#039;Sandbox_Reserved_486/Secondary_structure/1&#039;&amp;gt;Secondary Structure&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;scene name=&#039;Sandbox_Reserved_486/Receptor_binding_site/1&#039;&amp;gt;Receptor binding site&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Mechanism ==&lt;br /&gt;
&lt;br /&gt;
[[Image:Mech1.jpg]] &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[Image:Toxin-1.jpg]]  figure 3: Mechanism of inactivation of elongation factor 2 (EF2) by diphtheria toxin &amp;lt;ref&amp;gt;Stephen, J., &amp;amp; Pietrowski, R. (1981). Bacterial toxins. (1 ed., p. 11). Washington: Van Nostrand Reinhold Co. Ltd. &amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Medical Implications &amp;amp; Possible Application ==&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039; is the causative agent of the disease [http://en.wikipedia.org/wiki/Diphtheria Diphtheria]. The lethal dose for humans and other susceptible eukarya is .1μg of toxin per kg of body weight&amp;lt;ref&amp;gt;Oram , D., &amp;amp; Holmes, R. (2006). Diphtheria toxin. (3 ed., pp. 245-252). Burlington, San Diego, London: Academic Press publications.&amp;lt;/ref&amp;gt;  A vaccine has been made and is routinely used in first world countries as a basic immunization. The vaccine is made up of formaldehyde-treated Diphtheria toxin. However, Diphtheria toxin has been used is many other medical applications such as the drug [http://en.wikipedia.org/wiki/Denileukin_diftitox Denileukin diftitox] and cancer suppressors. Denileukin diftitox is a protein that combines &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039; and [http://en.wikipedia.org/wiki/Interleukin-2 Interleukin 2]. In some  Leukemias and Lymphomas cells express Interleukin receptors in which the drug can bind to and release the toxin within the cells.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Another application that &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039; can be used for is a cancer suppressor. In terms of the R domain of the protein which as we know binds to pro-HB-EFG receptors of the surface of cells and is translocated into the cell by endocytosis. Some scientist have made a non-toxic mutant of diphtheria toxin CRM197 which is being used to block the signaling activity of the receptor. In some cancers such as ovarian cancer, pro-HB-EFG is overexpressed and blocking the signal has shown promise in suppressing the effects of pro-HB-EFG on cancer development.&amp;lt;ref&amp;gt;Oram , D., &amp;amp; Holmes, R. (2006). Diphtheria toxin. (3 ed., pp. 245-252). Burlington, San Diego, London: Academic Press publications.&amp;lt;/ref&amp;gt; Another example, is called [http://en.wikipedia.org/wiki/Immunotoxin immunotoxins] which change the R domain to recognize a specific cell surface and kill that cell. This is being tested against different cancer cell types and has been successful.&lt;br /&gt;
&lt;br /&gt;
== References ==&lt;br /&gt;
* Parker, M. (1996). Protein toxin structure. (1 ed., pp. 25-43). Georgetown: R.G. Landes Company.&lt;br /&gt;
&lt;br /&gt;
* Stephen, J., &amp;amp; Pietrowski, R. (1981). Bacterial toxins. (1 ed., p. 11). Washington: Van Nostrand Reinhold Co. Ltd.&lt;br /&gt;
&lt;br /&gt;
* Oram , D., &amp;amp; Holmes, R. (2006). Diphtheria toxin. (3 ed., pp. 245-252). Burlington, San Diego, London: Academic Press publications.&lt;br /&gt;
&lt;br /&gt;
* Diphtheria toxin. (2011, November 25). Retrieved from &amp;lt;http://en.wikipedia.org/wiki/Diphtheria_toxin&amp;gt;&lt;br /&gt;
&lt;br /&gt;
* Murphy JR (1996). &amp;quot;Corynebacterium Diphtheriae: Diphtheria Toxin Production&amp;quot;. In Baron S et al.. Medical microbiology (4 ed.). Galveston, Texas: Univ. of Texas Medical Branch. ISBN 0-9631172-1-1.&lt;br /&gt;
&lt;br /&gt;
=== Footnotes ===&lt;br /&gt;
{{reflist}}&lt;/div&gt;</summary>
		<author><name>Brittany Smith</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_486&amp;diff=1383941</id>
		<title>Sandbox Reserved 486</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_486&amp;diff=1383941"/>
		<updated>2012-05-02T03:22:48Z</updated>

		<summary type="html">&lt;p&gt;Brittany Smith: /* Structure */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Sandbox_Reserved_Robert_B_Rose_1}}&lt;br /&gt;
&amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
= Diphtheria toxin =&lt;br /&gt;
&#039;&#039;&#039;Diphtheria Toxin&#039;&#039;&#039; is an exotoxin produced by the organism [http://en.wikipedia.org/wiki/Corynebacterium_diphtheriae Corynebcterium diphtheria] which has been infected by a [http://en.wikipedia.org/wiki/Bacteriophage bacteriophage] that contains the Diphtheria toxin gene. The toxin is the causative agent of [http://en.wikipedia.org/wiki/Diphtheria diphtheria]. Symptoms for Diphtheria can range from a sore throat with low-grade fever and an adherent pseudomembrane of the tonsils, pharynx, or nose to  infected skin lesions which lack a characteristic appearance.&amp;lt;ref&amp;gt;http://www.cdc.gov/ncidod/dbmd/diseaseinfo/diptheria_t.htm &amp;lt;/ref&amp;gt; The toxin is distributed to distant organs by the circulatory system and may cause paralysis and congestive heart failure.&amp;lt;ref&amp;gt;http://www.ncbi.nlm.nih.gov/books/NBK7971/ &amp;lt;/ref&amp;gt;  The toxin attacks and kills eukaryotic cells by inactivating the [http://en.wikipedia.org/wiki/Elongation_factor Elongation factor] (&#039;&#039;&#039;EF-2&#039;&#039;&#039;) in translation. EF-2 allows for translocation of the peptidyl-tRNA from the A-site to the P-site, which in turn frees the A site for another aminoacyl-tRNA to bind. By inactivating the elongation factor 2 during translation the protein being made cannot be completed and therefore becomes nonfunctional. The toxin is in a &#039;&#039;&#039;class of A-B&#039;&#039;&#039; which includes cholera toxin, &#039;&#039;Escherichia coli&#039;&#039; heat labile enterotoxin, &#039;&#039;Pseudomonas aeruginosa&#039;&#039; exotoxin A, tetanus, botulinum neurotoxins, and Shiga toxin. A-B class is characterized by two functionally distinct components such as component A is the catalytic components while component B does the receptor binding function.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;Structure load=&#039;1mdt&#039; size=&#039;500&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;Diphtheria toxin structure&#039; scene=&#039;Insert optional scene name here&#039; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== History ==&lt;br /&gt;
Scientist have made efforts since at least the 1740&#039;s to find the caustion and cure for &#039;&#039;&#039;diphtheria toxin&#039;&#039;&#039;. It wasn&#039;t until Koch&#039;s devolpment of medical microbiology and [http://en.wikipedia.org/wiki/Koch&#039;s_postulates Koch&#039;s postulates] that it was even possible for progression towards understanding the molecular causes. It was later in Koch&#039;s laboratory that Friedrich Loeffler isolated a bacteria from a patient that died from &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039;. Koch and Friedrich later inoculated 23 guinea pigs with the isolated bacteria and they all died in two to five days. Loeffler had another observation that only the isolated bacteria from the pigs were growing at the site of inoculation. Therefore, he came to the conclusion that the bacteria isolated was the causation of the &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039;. In Pasture institute in Paris, both Emile Roux and Alexandre Yersin were able to isolate the toxin by growing a pure culture of &#039;&#039;Diphtheria bacilli&#039;&#039; and forcing them through a porcelain filter. This allowed to obtain no bacteria and only the toxin. The toxin was injected into laboratory animals and caused the same symptoms of &#039;&#039;Diphtheria bacilli&#039;&#039;. It wasn&#039;t until sixty-five years later that protein crystals were produced and the structure obtained. [http://en.wikipedia.org/wiki/Emil_Adolf_von_Behring Emil von Behring] published a paper with the discovery of diphtheria antitoxin one week after Koch found out the resistance gained by vaccination from &#039;&#039;Diphtheria bacilli&#039;&#039;. This lead to elimination of the disease diphtheria in developing countries.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Von Behring received a Nobel Prize for the antitoxin which later would be known as antibodies against &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039;. The next vaccine made was one mixed of toxin and antitoxin. The antitoxin relieved the harmful effects of the toxin which was the real vaccine. This was later replaced in 1923 with a vaccine of a formaldehyde-treated Diphtheria toxin. Today in developing countries people get routine vaccinations so that diphtheria is unknown.&lt;br /&gt;
&lt;br /&gt;
== Structure ==&lt;br /&gt;
&lt;br /&gt;
Diphtheria toxin is a protein made of 535 amino acids and is 58kDa in weight. The [http://en.wikipedia.org/wiki/Zymogen proenzyme](zymogen) must be cleaved into fragments A &amp;amp; B and reduced in order for the toxicity gene to be turn on. In each fragment there are two &amp;lt;scene name=&#039;Sandbox_Reserved_486/Disulfide_bonds/1&#039;&amp;gt;Disulfide Bonds&amp;lt;/scene&amp;gt;. There are also three domains C,T, and R that have different functions. The first crystal structure of the toxin was obtained in 1992 by x-ray crystallography. However, the structure was a dimer and generated by freezing the protein. The dimer is non-toxic but becomes a toxic monomer at neutral pH by dissociation.&lt;br /&gt;
&lt;br /&gt;
*&amp;lt;scene name=&#039;Sandbox_Reserved_486/Fragment_a/1&#039;&amp;gt;Fragment A&amp;lt;/scene&amp;gt; is about molecular mass of 21kDa  and is the catalytically active portion of the protein. &lt;br /&gt;
*&amp;lt;scene name=&#039;Sandbox_Reserved_486/Fragment_b/1&#039;&amp;gt;Fragment B&amp;lt;/scene&amp;gt; is about 37kDa and contains the receptor binding &amp;amp; translocation portions of the protein.&lt;br /&gt;
&lt;br /&gt;
The two fragments are then separated into three domains c, t, and R which correspond to three major functions of the toxin.&lt;br /&gt;
&amp;lt;scene name=&#039;Sandbox_Reserved_486/Ligands/2&#039;&amp;gt;Ligand&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;scene name=&#039;Sandbox_Reserved_486/Hydrophobic_hydrophilic/1&#039;&amp;gt;the purple is the polar areas while the gray is hydrophobic areas&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;scene name=&#039;Sandbox_Reserved_486/Secondary_structure/1&#039;&amp;gt;Secondary Structure&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;scene name=&#039;Sandbox_Reserved_486/N_to_c_polymer/1&#039;&amp;gt;N domain to C domain in the main chains&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;scene name=&#039;Sandbox_Reserved_486/Active_site/1&#039;&amp;gt;Active site&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;scene name=&#039;Sandbox_Reserved_486/Receptor_binding_site/1&#039;&amp;gt;Receptor binding site&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Mechanism ==&lt;br /&gt;
&lt;br /&gt;
[[Image:Mech1.jpg]] &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[Image:Toxin-1.jpg]]  figure 3: Mechanism of inactivation of elongation factor 2 (EF2) by diphtheria toxin &amp;lt;ref&amp;gt;Stephen, J., &amp;amp; Pietrowski, R. (1981). Bacterial toxins. (1 ed., p. 11). Washington: Van Nostrand Reinhold Co. Ltd. &amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Medical Implications &amp;amp; Possible Application ==&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039; is the causative agent of the disease [http://en.wikipedia.org/wiki/Diphtheria Diphtheria]. The lethal dose for humans and other susceptible eukarya is .1μg of toxin per kg of body weight&amp;lt;ref&amp;gt;Oram , D., &amp;amp; Holmes, R. (2006). Diphtheria toxin. (3 ed., pp. 245-252). Burlington, San Diego, London: Academic Press publications.&amp;lt;/ref&amp;gt;  A vaccine has been made and is routinely used in first world countries as a basic immunization. The vaccine is made up of formaldehyde-treated Diphtheria toxin. However, Diphtheria toxin has been used is many other medical applications such as the drug [http://en.wikipedia.org/wiki/Denileukin_diftitox Denileukin diftitox] and cancer suppressors. Denileukin diftitox is a protein that combines &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039; and [http://en.wikipedia.org/wiki/Interleukin-2 Interleukin 2]. In some  Leukemias and Lymphomas cells express Interleukin receptors in which the drug can bind to and release the toxin within the cells.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Another application that &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039; can be used for is a cancer suppressor. In terms of the R domain of the protein which as we know binds to pro-HB-EFG receptors of the surface of cells and is translocated into the cell by endocytosis. Some scientist have made a non-toxic mutant of diphtheria toxin CRM197 which is being used to block the signaling activity of the receptor. In some cancers such as ovarian cancer, pro-HB-EFG is overexpressed and blocking the signal has shown promise in suppressing the effects of pro-HB-EFG on cancer development.&amp;lt;ref&amp;gt;Oram , D., &amp;amp; Holmes, R. (2006). Diphtheria toxin. (3 ed., pp. 245-252). Burlington, San Diego, London: Academic Press publications.&amp;lt;/ref&amp;gt; Another example, is called [http://en.wikipedia.org/wiki/Immunotoxin immunotoxins] which change the R domain to recognize a specific cell surface and kill that cell. This is being tested against different cancer cell types and has been successful.&lt;br /&gt;
&lt;br /&gt;
== References ==&lt;br /&gt;
* Parker, M. (1996). Protein toxin structure. (1 ed., pp. 25-43). Georgetown: R.G. Landes Company.&lt;br /&gt;
&lt;br /&gt;
* Stephen, J., &amp;amp; Pietrowski, R. (1981). Bacterial toxins. (1 ed., p. 11). Washington: Van Nostrand Reinhold Co. Ltd.&lt;br /&gt;
&lt;br /&gt;
* Oram , D., &amp;amp; Holmes, R. (2006). Diphtheria toxin. (3 ed., pp. 245-252). Burlington, San Diego, London: Academic Press publications.&lt;br /&gt;
&lt;br /&gt;
* Diphtheria toxin. (2011, November 25). Retrieved from &amp;lt;http://en.wikipedia.org/wiki/Diphtheria_toxin&amp;gt;&lt;br /&gt;
&lt;br /&gt;
* Murphy JR (1996). &amp;quot;Corynebacterium Diphtheriae: Diphtheria Toxin Production&amp;quot;. In Baron S et al.. Medical microbiology (4 ed.). Galveston, Texas: Univ. of Texas Medical Branch. ISBN 0-9631172-1-1.&lt;br /&gt;
&lt;br /&gt;
=== Footnotes ===&lt;br /&gt;
{{reflist}}&lt;/div&gt;</summary>
		<author><name>Brittany Smith</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_486&amp;diff=1383894</id>
		<title>Sandbox Reserved 486</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_486&amp;diff=1383894"/>
		<updated>2012-05-02T02:45:23Z</updated>

		<summary type="html">&lt;p&gt;Brittany Smith: /* Structure */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Sandbox_Reserved_Robert_B_Rose_1}}&lt;br /&gt;
&amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
= Diphtheria toxin =&lt;br /&gt;
&#039;&#039;&#039;Diphtheria Toxin&#039;&#039;&#039; is an exotoxin produced by the organism [http://en.wikipedia.org/wiki/Corynebacterium_diphtheriae Corynebcterium diphtheria] which has been infected by a [http://en.wikipedia.org/wiki/Bacteriophage bacteriophage] that contains the Diphtheria toxin gene. The toxin is the causative agent of [http://en.wikipedia.org/wiki/Diphtheria diphtheria]. Symptoms for Diphtheria can range from a sore throat with low-grade fever and an adherent pseudomembrane of the tonsils, pharynx, or nose to  infected skin lesions which lack a characteristic appearance.&amp;lt;ref&amp;gt;http://www.cdc.gov/ncidod/dbmd/diseaseinfo/diptheria_t.htm &amp;lt;/ref&amp;gt; The toxin is distributed to distant organs by the circulatory system and may cause paralysis and congestive heart failure.&amp;lt;ref&amp;gt;http://www.ncbi.nlm.nih.gov/books/NBK7971/ &amp;lt;/ref&amp;gt;  The toxin attacks and kills eukaryotic cells by inactivating the [http://en.wikipedia.org/wiki/Elongation_factor Elongation factor] (&#039;&#039;&#039;EF-2&#039;&#039;&#039;) in translation. EF-2 allows for translocation of the peptidyl-tRNA from the A-site to the P-site, which in turn frees the A site for another aminoacyl-tRNA to bind. By inactivating the elongation factor 2 during translation the protein being made cannot be completed and therefore becomes nonfunctional. The toxin is in a &#039;&#039;&#039;class of A-B&#039;&#039;&#039; which includes cholera toxin, &#039;&#039;Escherichia coli&#039;&#039; heat labile enterotoxin, &#039;&#039;Pseudomonas aeruginosa&#039;&#039; exotoxin A, tetanus, botulinum neurotoxins, and Shiga toxin. A-B class is characterized by two functionally distinct components such as component A is the catalytic components while component B does the receptor binding function.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;Structure load=&#039;1mdt&#039; size=&#039;500&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;Diphtheria toxin structure&#039; scene=&#039;Insert optional scene name here&#039; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== History ==&lt;br /&gt;
Scientist have made efforts since at least the 1740&#039;s to find the caustion and cure for &#039;&#039;&#039;diphtheria toxin&#039;&#039;&#039;. It wasn&#039;t until Koch&#039;s devolpment of medical microbiology and [http://en.wikipedia.org/wiki/Koch&#039;s_postulates Koch&#039;s postulates] that it was even possible for progression towards understanding the molecular causes. It was later in Koch&#039;s laboratory that Friedrich Loeffler isolated a bacteria from a patient that died from &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039;. Koch and Friedrich later inoculated 23 guinea pigs with the isolated bacteria and they all died in two to five days. Loeffler had another observation that only the isolated bacteria from the pigs were growing at the site of inoculation. Therefore, he came to the conclusion that the bacteria isolated was the causation of the &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039;. In Pasture institute in Paris, both Emile Roux and Alexandre Yersin were able to isolate the toxin by growing a pure culture of &#039;&#039;Diphtheria bacilli&#039;&#039; and forcing them through a porcelain filter. This allowed to obtain no bacteria and only the toxin. The toxin was injected into laboratory animals and caused the same symptoms of &#039;&#039;Diphtheria bacilli&#039;&#039;. It wasn&#039;t until sixty-five years later that protein crystals were produced and the structure obtained. [http://en.wikipedia.org/wiki/Emil_Adolf_von_Behring Emil von Behring] published a paper with the discovery of diphtheria antitoxin one week after Koch found out the resistance gained by vaccination from &#039;&#039;Diphtheria bacilli&#039;&#039;. This lead to elimination of the disease diphtheria in developing countries.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Von Behring received a Nobel Prize for the antitoxin which later would be known as antibodies against &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039;. The next vaccine made was one mixed of toxin and antitoxin. The antitoxin relieved the harmful effects of the toxin which was the real vaccine. This was later replaced in 1923 with a vaccine of a formaldehyde-treated Diphtheria toxin. Today in developing countries people get routine vaccinations so that diphtheria is unknown.&lt;br /&gt;
&lt;br /&gt;
== Structure ==&lt;br /&gt;
&lt;br /&gt;
Diphtheria toxin is a protein made of 535 amino acids and is 58kDa in weight. The [http://en.wikipedia.org/wiki/Zymogen proenzyme](zymogen) must be cleaved into fragments A &amp;amp; B in order for the toxicity gene to be turn on. In each fragment there are two &amp;lt;scene name=&#039;Sandbox_Reserved_486/Disulfide_bonds/1&#039;&amp;gt;Disulfide Bonds&amp;lt;/scene&amp;gt;. There are also three domains C,T, and R that have different functions.&lt;br /&gt;
&lt;br /&gt;
*&amp;lt;scene name=&#039;Sandbox_Reserved_486/Fragment_a/1&#039;&amp;gt;Fragment A&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
  &lt;br /&gt;
&amp;lt;scene name=&#039;Sandbox_Reserved_486/Ligands/2&#039;&amp;gt;Ligand&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;scene name=&#039;Sandbox_Reserved_486/Hydrophobic_hydrophilic/1&#039;&amp;gt;the purple is the polar areas while the gray is hydrophobic areas&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;scene name=&#039;Sandbox_Reserved_486/Secondary_structure/1&#039;&amp;gt;Secondary Structure&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;scene name=&#039;Sandbox_Reserved_486/N_to_c_polymer/1&#039;&amp;gt;N domain to C domain in the main chains&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;scene name=&#039;Sandbox_Reserved_486/Fragment_b/1&#039;&amp;gt;Fragment B&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;scene name=&#039;Sandbox_Reserved_486/Active_site/1&#039;&amp;gt;Active site&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;scene name=&#039;Sandbox_Reserved_486/Receptor_binding_site/1&#039;&amp;gt;Receptor binding site&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Mechanism ==&lt;br /&gt;
&lt;br /&gt;
[[Image:Mech1.jpg]] &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[Image:Toxin-1.jpg]]  figure 3: Mechanism of inactivation of elongation factor 2 (EF2) by diphtheria toxin &amp;lt;ref&amp;gt;Stephen, J., &amp;amp; Pietrowski, R. (1981). Bacterial toxins. (1 ed., p. 11). Washington: Van Nostrand Reinhold Co. Ltd. &amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Medical Implications &amp;amp; Possible Application ==&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039; is the causative agent of the disease [http://en.wikipedia.org/wiki/Diphtheria Diphtheria]. The lethal dose for humans and other susceptible eukarya is .1μg of toxin per kg of body weight&amp;lt;ref&amp;gt;Oram , D., &amp;amp; Holmes, R. (2006). Diphtheria toxin. (3 ed., pp. 245-252). Burlington, San Diego, London: Academic Press publications.&amp;lt;/ref&amp;gt;  A vaccine has been made and is routinely used in first world countries as a basic immunization. The vaccine is made up of formaldehyde-treated Diphtheria toxin. However, Diphtheria toxin has been used is many other medical applications such as the drug [http://en.wikipedia.org/wiki/Denileukin_diftitox Denileukin diftitox] and cancer suppressors. Denileukin diftitox is a protein that combines &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039; and [http://en.wikipedia.org/wiki/Interleukin-2 Interleukin 2]. In some  Leukemias and Lymphomas cells express Interleukin receptors in which the drug can bind to and release the toxin within the cells.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Another application that &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039; can be used for is a cancer suppressor. In terms of the R domain of the protein which as we know binds to pro-HB-EFG receptors of the surface of cells and is translocated into the cell by endocytosis. Some scientist have made a non-toxic mutant of diphtheria toxin CRM197 which is being used to block the signaling activity of the receptor. In some cancers such as ovarian cancer, pro-HB-EFG is overexpressed and blocking the signal has shown promise in suppressing the effects of pro-HB-EFG on cancer development.&amp;lt;ref&amp;gt;Oram , D., &amp;amp; Holmes, R. (2006). Diphtheria toxin. (3 ed., pp. 245-252). Burlington, San Diego, London: Academic Press publications.&amp;lt;/ref&amp;gt; Another example, is called [http://en.wikipedia.org/wiki/Immunotoxin immunotoxins] which change the R domain to recognize a specific cell surface and kill that cell. This is being tested against different cancer cell types and has been successful.&lt;br /&gt;
&lt;br /&gt;
== References ==&lt;br /&gt;
* Parker, M. (1996). Protein toxin structure. (1 ed., pp. 25-43). Georgetown: R.G. Landes Company.&lt;br /&gt;
&lt;br /&gt;
* Stephen, J., &amp;amp; Pietrowski, R. (1981). Bacterial toxins. (1 ed., p. 11). Washington: Van Nostrand Reinhold Co. Ltd.&lt;br /&gt;
&lt;br /&gt;
* Oram , D., &amp;amp; Holmes, R. (2006). Diphtheria toxin. (3 ed., pp. 245-252). Burlington, San Diego, London: Academic Press publications.&lt;br /&gt;
&lt;br /&gt;
* Diphtheria toxin. (2011, November 25). Retrieved from &amp;lt;http://en.wikipedia.org/wiki/Diphtheria_toxin&amp;gt;&lt;br /&gt;
&lt;br /&gt;
* Murphy JR (1996). &amp;quot;Corynebacterium Diphtheriae: Diphtheria Toxin Production&amp;quot;. In Baron S et al.. Medical microbiology (4 ed.). Galveston, Texas: Univ. of Texas Medical Branch. ISBN 0-9631172-1-1.&lt;br /&gt;
&lt;br /&gt;
=== Footnotes ===&lt;br /&gt;
{{reflist}}&lt;/div&gt;</summary>
		<author><name>Brittany Smith</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_486&amp;diff=1383885</id>
		<title>Sandbox Reserved 486</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_486&amp;diff=1383885"/>
		<updated>2012-05-02T02:41:03Z</updated>

		<summary type="html">&lt;p&gt;Brittany Smith: /* Structure */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Sandbox_Reserved_Robert_B_Rose_1}}&lt;br /&gt;
&amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
= Diphtheria toxin =&lt;br /&gt;
&#039;&#039;&#039;Diphtheria Toxin&#039;&#039;&#039; is an exotoxin produced by the organism [http://en.wikipedia.org/wiki/Corynebacterium_diphtheriae Corynebcterium diphtheria] which has been infected by a [http://en.wikipedia.org/wiki/Bacteriophage bacteriophage] that contains the Diphtheria toxin gene. The toxin is the causative agent of [http://en.wikipedia.org/wiki/Diphtheria diphtheria]. Symptoms for Diphtheria can range from a sore throat with low-grade fever and an adherent pseudomembrane of the tonsils, pharynx, or nose to  infected skin lesions which lack a characteristic appearance.&amp;lt;ref&amp;gt;http://www.cdc.gov/ncidod/dbmd/diseaseinfo/diptheria_t.htm &amp;lt;/ref&amp;gt; The toxin is distributed to distant organs by the circulatory system and may cause paralysis and congestive heart failure.&amp;lt;ref&amp;gt;http://www.ncbi.nlm.nih.gov/books/NBK7971/ &amp;lt;/ref&amp;gt;  The toxin attacks and kills eukaryotic cells by inactivating the [http://en.wikipedia.org/wiki/Elongation_factor Elongation factor] (&#039;&#039;&#039;EF-2&#039;&#039;&#039;) in translation. EF-2 allows for translocation of the peptidyl-tRNA from the A-site to the P-site, which in turn frees the A site for another aminoacyl-tRNA to bind. By inactivating the elongation factor 2 during translation the protein being made cannot be completed and therefore becomes nonfunctional. The toxin is in a &#039;&#039;&#039;class of A-B&#039;&#039;&#039; which includes cholera toxin, &#039;&#039;Escherichia coli&#039;&#039; heat labile enterotoxin, &#039;&#039;Pseudomonas aeruginosa&#039;&#039; exotoxin A, tetanus, botulinum neurotoxins, and Shiga toxin. A-B class is characterized by two functionally distinct components such as component A is the catalytic components while component B does the receptor binding function.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;Structure load=&#039;1mdt&#039; size=&#039;500&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;Diphtheria toxin structure&#039; scene=&#039;Insert optional scene name here&#039; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== History ==&lt;br /&gt;
Scientist have made efforts since at least the 1740&#039;s to find the caustion and cure for &#039;&#039;&#039;diphtheria toxin&#039;&#039;&#039;. It wasn&#039;t until Koch&#039;s devolpment of medical microbiology and [http://en.wikipedia.org/wiki/Koch&#039;s_postulates Koch&#039;s postulates] that it was even possible for progression towards understanding the molecular causes. It was later in Koch&#039;s laboratory that Friedrich Loeffler isolated a bacteria from a patient that died from &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039;. Koch and Friedrich later inoculated 23 guinea pigs with the isolated bacteria and they all died in two to five days. Loeffler had another observation that only the isolated bacteria from the pigs were growing at the site of inoculation. Therefore, he came to the conclusion that the bacteria isolated was the causation of the &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039;. In Pasture institute in Paris, both Emile Roux and Alexandre Yersin were able to isolate the toxin by growing a pure culture of &#039;&#039;Diphtheria bacilli&#039;&#039; and forcing them through a porcelain filter. This allowed to obtain no bacteria and only the toxin. The toxin was injected into laboratory animals and caused the same symptoms of &#039;&#039;Diphtheria bacilli&#039;&#039;. It wasn&#039;t until sixty-five years later that protein crystals were produced and the structure obtained. [http://en.wikipedia.org/wiki/Emil_Adolf_von_Behring Emil von Behring] published a paper with the discovery of diphtheria antitoxin one week after Koch found out the resistance gained by vaccination from &#039;&#039;Diphtheria bacilli&#039;&#039;. This lead to elimination of the disease diphtheria in developing countries.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Von Behring received a Nobel Prize for the antitoxin which later would be known as antibodies against &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039;. The next vaccine made was one mixed of toxin and antitoxin. The antitoxin relieved the harmful effects of the toxin which was the real vaccine. This was later replaced in 1923 with a vaccine of a formaldehyde-treated Diphtheria toxin. Today in developing countries people get routine vaccinations so that diphtheria is unknown.&lt;br /&gt;
&lt;br /&gt;
== Structure ==&lt;br /&gt;
&lt;br /&gt;
Diphtheria toxin is a protein made of 535 amino acids and is 58kDa in weight. The [http://en.wikipedia.org/wiki/Zymogen proenzyme](zymogen) must be cleaved into fragments A &amp;amp; B in order for the toxicity gene to be turn on. That contain C, T, and R domains that have different functions.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;scene name=&#039;Sandbox_Reserved_486/Ligands/2&#039;&amp;gt;Ligand&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;scene name=&#039;Sandbox_Reserved_486/Hydrophobic_hydrophilic/1&#039;&amp;gt;the purple is the polar areas while the gray is hydrophobic areas&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;scene name=&#039;Sandbox_Reserved_486/Secondary_structure/1&#039;&amp;gt;Secondary Structure&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;scene name=&#039;Sandbox_Reserved_486/N_to_c_polymer/1&#039;&amp;gt;N domain to C domain in the main chains&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;scene name=&#039;Sandbox_Reserved_486/Fragment_a/1&#039;&amp;gt;Fragment A&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;scene name=&#039;Sandbox_Reserved_486/Fragment_b/1&#039;&amp;gt;Fragment B&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;scene name=&#039;Sandbox_Reserved_486/Disulfide_bonds/1&#039;&amp;gt;Disulfide Bonds&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;scene name=&#039;Sandbox_Reserved_486/Active_site/1&#039;&amp;gt;Active site&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;scene name=&#039;Sandbox_Reserved_486/Receptor_binding_site/1&#039;&amp;gt;Receptor binding site&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Mechanism ==&lt;br /&gt;
&lt;br /&gt;
[[Image:Mech1.jpg]] &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[Image:Toxin-1.jpg]]  figure 3: Mechanism of inactivation of elongation factor 2 (EF2) by diphtheria toxin &amp;lt;ref&amp;gt;Stephen, J., &amp;amp; Pietrowski, R. (1981). Bacterial toxins. (1 ed., p. 11). Washington: Van Nostrand Reinhold Co. Ltd. &amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Medical Implications &amp;amp; Possible Application ==&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039; is the causative agent of the disease [http://en.wikipedia.org/wiki/Diphtheria Diphtheria]. The lethal dose for humans and other susceptible eukarya is .1μg of toxin per kg of body weight&amp;lt;ref&amp;gt;Oram , D., &amp;amp; Holmes, R. (2006). Diphtheria toxin. (3 ed., pp. 245-252). Burlington, San Diego, London: Academic Press publications.&amp;lt;/ref&amp;gt;  A vaccine has been made and is routinely used in first world countries as a basic immunization. The vaccine is made up of formaldehyde-treated Diphtheria toxin. However, Diphtheria toxin has been used is many other medical applications such as the drug [http://en.wikipedia.org/wiki/Denileukin_diftitox Denileukin diftitox] and cancer suppressors. Denileukin diftitox is a protein that combines &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039; and [http://en.wikipedia.org/wiki/Interleukin-2 Interleukin 2]. In some  Leukemias and Lymphomas cells express Interleukin receptors in which the drug can bind to and release the toxin within the cells.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Another application that &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039; can be used for is a cancer suppressor. In terms of the R domain of the protein which as we know binds to pro-HB-EFG receptors of the surface of cells and is translocated into the cell by endocytosis. Some scientist have made a non-toxic mutant of diphtheria toxin CRM197 which is being used to block the signaling activity of the receptor. In some cancers such as ovarian cancer, pro-HB-EFG is overexpressed and blocking the signal has shown promise in suppressing the effects of pro-HB-EFG on cancer development.&amp;lt;ref&amp;gt;Oram , D., &amp;amp; Holmes, R. (2006). Diphtheria toxin. (3 ed., pp. 245-252). Burlington, San Diego, London: Academic Press publications.&amp;lt;/ref&amp;gt; Another example, is called [http://en.wikipedia.org/wiki/Immunotoxin immunotoxins] which change the R domain to recognize a specific cell surface and kill that cell. This is being tested against different cancer cell types and has been successful.&lt;br /&gt;
&lt;br /&gt;
== References ==&lt;br /&gt;
* Parker, M. (1996). Protein toxin structure. (1 ed., pp. 25-43). Georgetown: R.G. Landes Company.&lt;br /&gt;
&lt;br /&gt;
* Stephen, J., &amp;amp; Pietrowski, R. (1981). Bacterial toxins. (1 ed., p. 11). Washington: Van Nostrand Reinhold Co. Ltd.&lt;br /&gt;
&lt;br /&gt;
* Oram , D., &amp;amp; Holmes, R. (2006). Diphtheria toxin. (3 ed., pp. 245-252). Burlington, San Diego, London: Academic Press publications.&lt;br /&gt;
&lt;br /&gt;
* Diphtheria toxin. (2011, November 25). Retrieved from &amp;lt;http://en.wikipedia.org/wiki/Diphtheria_toxin&amp;gt;&lt;br /&gt;
&lt;br /&gt;
* Murphy JR (1996). &amp;quot;Corynebacterium Diphtheriae: Diphtheria Toxin Production&amp;quot;. In Baron S et al.. Medical microbiology (4 ed.). Galveston, Texas: Univ. of Texas Medical Branch. ISBN 0-9631172-1-1.&lt;br /&gt;
&lt;br /&gt;
=== Footnotes ===&lt;br /&gt;
{{reflist}}&lt;/div&gt;</summary>
		<author><name>Brittany Smith</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_486&amp;diff=1383876</id>
		<title>Sandbox Reserved 486</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_486&amp;diff=1383876"/>
		<updated>2012-05-02T02:36:04Z</updated>

		<summary type="html">&lt;p&gt;Brittany Smith: /* Mechanism */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Sandbox_Reserved_Robert_B_Rose_1}}&lt;br /&gt;
&amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
= Diphtheria toxin =&lt;br /&gt;
&#039;&#039;&#039;Diphtheria Toxin&#039;&#039;&#039; is an exotoxin produced by the organism [http://en.wikipedia.org/wiki/Corynebacterium_diphtheriae Corynebcterium diphtheria] which has been infected by a [http://en.wikipedia.org/wiki/Bacteriophage bacteriophage] that contains the Diphtheria toxin gene. The toxin is the causative agent of [http://en.wikipedia.org/wiki/Diphtheria diphtheria]. Symptoms for Diphtheria can range from a sore throat with low-grade fever and an adherent pseudomembrane of the tonsils, pharynx, or nose to  infected skin lesions which lack a characteristic appearance.&amp;lt;ref&amp;gt;http://www.cdc.gov/ncidod/dbmd/diseaseinfo/diptheria_t.htm &amp;lt;/ref&amp;gt; The toxin is distributed to distant organs by the circulatory system and may cause paralysis and congestive heart failure.&amp;lt;ref&amp;gt;http://www.ncbi.nlm.nih.gov/books/NBK7971/ &amp;lt;/ref&amp;gt;  The toxin attacks and kills eukaryotic cells by inactivating the [http://en.wikipedia.org/wiki/Elongation_factor Elongation factor] (&#039;&#039;&#039;EF-2&#039;&#039;&#039;) in translation. EF-2 allows for translocation of the peptidyl-tRNA from the A-site to the P-site, which in turn frees the A site for another aminoacyl-tRNA to bind. By inactivating the elongation factor 2 during translation the protein being made cannot be completed and therefore becomes nonfunctional. The toxin is in a &#039;&#039;&#039;class of A-B&#039;&#039;&#039; which includes cholera toxin, &#039;&#039;Escherichia coli&#039;&#039; heat labile enterotoxin, &#039;&#039;Pseudomonas aeruginosa&#039;&#039; exotoxin A, tetanus, botulinum neurotoxins, and Shiga toxin. A-B class is characterized by two functionally distinct components such as component A is the catalytic components while component B does the receptor binding function.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;Structure load=&#039;1mdt&#039; size=&#039;500&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;Diphtheria toxin structure&#039; scene=&#039;Insert optional scene name here&#039; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== History ==&lt;br /&gt;
Scientist have made efforts since at least the 1740&#039;s to find the caustion and cure for &#039;&#039;&#039;diphtheria toxin&#039;&#039;&#039;. It wasn&#039;t until Koch&#039;s devolpment of medical microbiology and [http://en.wikipedia.org/wiki/Koch&#039;s_postulates Koch&#039;s postulates] that it was even possible for progression towards understanding the molecular causes. It was later in Koch&#039;s laboratory that Friedrich Loeffler isolated a bacteria from a patient that died from &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039;. Koch and Friedrich later inoculated 23 guinea pigs with the isolated bacteria and they all died in two to five days. Loeffler had another observation that only the isolated bacteria from the pigs were growing at the site of inoculation. Therefore, he came to the conclusion that the bacteria isolated was the causation of the &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039;. In Pasture institute in Paris, both Emile Roux and Alexandre Yersin were able to isolate the toxin by growing a pure culture of &#039;&#039;Diphtheria bacilli&#039;&#039; and forcing them through a porcelain filter. This allowed to obtain no bacteria and only the toxin. The toxin was injected into laboratory animals and caused the same symptoms of &#039;&#039;Diphtheria bacilli&#039;&#039;. It wasn&#039;t until sixty-five years later that protein crystals were produced and the structure obtained. [http://en.wikipedia.org/wiki/Emil_Adolf_von_Behring Emil von Behring] published a paper with the discovery of diphtheria antitoxin one week after Koch found out the resistance gained by vaccination from &#039;&#039;Diphtheria bacilli&#039;&#039;. This lead to elimination of the disease diphtheria in developing countries.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Von Behring received a Nobel Prize for the antitoxin which later would be known as antibodies against &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039;. The next vaccine made was one mixed of toxin and antitoxin. The antitoxin relieved the harmful effects of the toxin which was the real vaccine. This was later replaced in 1923 with a vaccine of a formaldehyde-treated Diphtheria toxin. Today in developing countries people get routine vaccinations so that diphtheria is unknown.&lt;br /&gt;
&lt;br /&gt;
== Structure ==&lt;br /&gt;
&lt;br /&gt;
Diphtheria toxin is a protein made of 535 amino acids that makes up two fragments A &amp;amp; B. That contain C, T, and R domains that have different functions.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;scene name=&#039;Sandbox_Reserved_486/Ligands/2&#039;&amp;gt;Ligand&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;scene name=&#039;Sandbox_Reserved_486/Hydrophobic_hydrophilic/1&#039;&amp;gt;the purple is the polar areas while the gray is hydrophobic areas&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;scene name=&#039;Sandbox_Reserved_486/Secondary_structure/1&#039;&amp;gt;Secondary Structure&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;scene name=&#039;Sandbox_Reserved_486/N_to_c_polymer/1&#039;&amp;gt;N domain to C domain in the main chains&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;scene name=&#039;Sandbox_Reserved_486/Fragment_a/1&#039;&amp;gt;Fragment A&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;scene name=&#039;Sandbox_Reserved_486/Fragment_b/1&#039;&amp;gt;Fragment B&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;scene name=&#039;Sandbox_Reserved_486/Disulfide_bonds/1&#039;&amp;gt;Disulfide Bonds&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;scene name=&#039;Sandbox_Reserved_486/Active_site/1&#039;&amp;gt;Active site&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;scene name=&#039;Sandbox_Reserved_486/Receptor_binding_site/1&#039;&amp;gt;Receptor binding site&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Mechanism ==&lt;br /&gt;
&lt;br /&gt;
[[Image:Mech1.jpg]] &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[Image:Toxin-1.jpg]]  figure 3: Mechanism of inactivation of elongation factor 2 (EF2) by diphtheria toxin &amp;lt;ref&amp;gt;Stephen, J., &amp;amp; Pietrowski, R. (1981). Bacterial toxins. (1 ed., p. 11). Washington: Van Nostrand Reinhold Co. Ltd. &amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Medical Implications &amp;amp; Possible Application ==&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039; is the causative agent of the disease [http://en.wikipedia.org/wiki/Diphtheria Diphtheria]. The lethal dose for humans and other susceptible eukarya is .1μg of toxin per kg of body weight&amp;lt;ref&amp;gt;Oram , D., &amp;amp; Holmes, R. (2006). Diphtheria toxin. (3 ed., pp. 245-252). Burlington, San Diego, London: Academic Press publications.&amp;lt;/ref&amp;gt;  A vaccine has been made and is routinely used in first world countries as a basic immunization. The vaccine is made up of formaldehyde-treated Diphtheria toxin. However, Diphtheria toxin has been used is many other medical applications such as the drug [http://en.wikipedia.org/wiki/Denileukin_diftitox Denileukin diftitox] and cancer suppressors. Denileukin diftitox is a protein that combines &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039; and [http://en.wikipedia.org/wiki/Interleukin-2 Interleukin 2]. In some  Leukemias and Lymphomas cells express Interleukin receptors in which the drug can bind to and release the toxin within the cells.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Another application that &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039; can be used for is a cancer suppressor. In terms of the R domain of the protein which as we know binds to pro-HB-EFG receptors of the surface of cells and is translocated into the cell by endocytosis. Some scientist have made a non-toxic mutant of diphtheria toxin CRM197 which is being used to block the signaling activity of the receptor. In some cancers such as ovarian cancer, pro-HB-EFG is overexpressed and blocking the signal has shown promise in suppressing the effects of pro-HB-EFG on cancer development.&amp;lt;ref&amp;gt;Oram , D., &amp;amp; Holmes, R. (2006). Diphtheria toxin. (3 ed., pp. 245-252). Burlington, San Diego, London: Academic Press publications.&amp;lt;/ref&amp;gt; Another example, is called [http://en.wikipedia.org/wiki/Immunotoxin immunotoxins] which change the R domain to recognize a specific cell surface and kill that cell. This is being tested against different cancer cell types and has been successful.&lt;br /&gt;
&lt;br /&gt;
== References ==&lt;br /&gt;
* Parker, M. (1996). Protein toxin structure. (1 ed., pp. 25-43). Georgetown: R.G. Landes Company.&lt;br /&gt;
&lt;br /&gt;
* Stephen, J., &amp;amp; Pietrowski, R. (1981). Bacterial toxins. (1 ed., p. 11). Washington: Van Nostrand Reinhold Co. Ltd.&lt;br /&gt;
&lt;br /&gt;
* Oram , D., &amp;amp; Holmes, R. (2006). Diphtheria toxin. (3 ed., pp. 245-252). Burlington, San Diego, London: Academic Press publications.&lt;br /&gt;
&lt;br /&gt;
* Diphtheria toxin. (2011, November 25). Retrieved from &amp;lt;http://en.wikipedia.org/wiki/Diphtheria_toxin&amp;gt;&lt;br /&gt;
&lt;br /&gt;
* Murphy JR (1996). &amp;quot;Corynebacterium Diphtheriae: Diphtheria Toxin Production&amp;quot;. In Baron S et al.. Medical microbiology (4 ed.). Galveston, Texas: Univ. of Texas Medical Branch. ISBN 0-9631172-1-1.&lt;br /&gt;
&lt;br /&gt;
=== Footnotes ===&lt;br /&gt;
{{reflist}}&lt;/div&gt;</summary>
		<author><name>Brittany Smith</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_486&amp;diff=1383872</id>
		<title>Sandbox Reserved 486</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_486&amp;diff=1383872"/>
		<updated>2012-05-02T02:34:01Z</updated>

		<summary type="html">&lt;p&gt;Brittany Smith: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Sandbox_Reserved_Robert_B_Rose_1}}&lt;br /&gt;
&amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
= Diphtheria toxin =&lt;br /&gt;
&#039;&#039;&#039;Diphtheria Toxin&#039;&#039;&#039; is an exotoxin produced by the organism [http://en.wikipedia.org/wiki/Corynebacterium_diphtheriae Corynebcterium diphtheria] which has been infected by a [http://en.wikipedia.org/wiki/Bacteriophage bacteriophage] that contains the Diphtheria toxin gene. The toxin is the causative agent of [http://en.wikipedia.org/wiki/Diphtheria diphtheria]. Symptoms for Diphtheria can range from a sore throat with low-grade fever and an adherent pseudomembrane of the tonsils, pharynx, or nose to  infected skin lesions which lack a characteristic appearance.&amp;lt;ref&amp;gt;http://www.cdc.gov/ncidod/dbmd/diseaseinfo/diptheria_t.htm &amp;lt;/ref&amp;gt; The toxin is distributed to distant organs by the circulatory system and may cause paralysis and congestive heart failure.&amp;lt;ref&amp;gt;http://www.ncbi.nlm.nih.gov/books/NBK7971/ &amp;lt;/ref&amp;gt;  The toxin attacks and kills eukaryotic cells by inactivating the [http://en.wikipedia.org/wiki/Elongation_factor Elongation factor] (&#039;&#039;&#039;EF-2&#039;&#039;&#039;) in translation. EF-2 allows for translocation of the peptidyl-tRNA from the A-site to the P-site, which in turn frees the A site for another aminoacyl-tRNA to bind. By inactivating the elongation factor 2 during translation the protein being made cannot be completed and therefore becomes nonfunctional. The toxin is in a &#039;&#039;&#039;class of A-B&#039;&#039;&#039; which includes cholera toxin, &#039;&#039;Escherichia coli&#039;&#039; heat labile enterotoxin, &#039;&#039;Pseudomonas aeruginosa&#039;&#039; exotoxin A, tetanus, botulinum neurotoxins, and Shiga toxin. A-B class is characterized by two functionally distinct components such as component A is the catalytic components while component B does the receptor binding function.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;Structure load=&#039;1mdt&#039; size=&#039;500&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;Diphtheria toxin structure&#039; scene=&#039;Insert optional scene name here&#039; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== History ==&lt;br /&gt;
Scientist have made efforts since at least the 1740&#039;s to find the caustion and cure for &#039;&#039;&#039;diphtheria toxin&#039;&#039;&#039;. It wasn&#039;t until Koch&#039;s devolpment of medical microbiology and [http://en.wikipedia.org/wiki/Koch&#039;s_postulates Koch&#039;s postulates] that it was even possible for progression towards understanding the molecular causes. It was later in Koch&#039;s laboratory that Friedrich Loeffler isolated a bacteria from a patient that died from &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039;. Koch and Friedrich later inoculated 23 guinea pigs with the isolated bacteria and they all died in two to five days. Loeffler had another observation that only the isolated bacteria from the pigs were growing at the site of inoculation. Therefore, he came to the conclusion that the bacteria isolated was the causation of the &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039;. In Pasture institute in Paris, both Emile Roux and Alexandre Yersin were able to isolate the toxin by growing a pure culture of &#039;&#039;Diphtheria bacilli&#039;&#039; and forcing them through a porcelain filter. This allowed to obtain no bacteria and only the toxin. The toxin was injected into laboratory animals and caused the same symptoms of &#039;&#039;Diphtheria bacilli&#039;&#039;. It wasn&#039;t until sixty-five years later that protein crystals were produced and the structure obtained. [http://en.wikipedia.org/wiki/Emil_Adolf_von_Behring Emil von Behring] published a paper with the discovery of diphtheria antitoxin one week after Koch found out the resistance gained by vaccination from &#039;&#039;Diphtheria bacilli&#039;&#039;. This lead to elimination of the disease diphtheria in developing countries.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Von Behring received a Nobel Prize for the antitoxin which later would be known as antibodies against &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039;. The next vaccine made was one mixed of toxin and antitoxin. The antitoxin relieved the harmful effects of the toxin which was the real vaccine. This was later replaced in 1923 with a vaccine of a formaldehyde-treated Diphtheria toxin. Today in developing countries people get routine vaccinations so that diphtheria is unknown.&lt;br /&gt;
&lt;br /&gt;
== Structure ==&lt;br /&gt;
&lt;br /&gt;
Diphtheria toxin is a protein made of 535 amino acids that makes up two fragments A &amp;amp; B. That contain C, T, and R domains that have different functions.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;scene name=&#039;Sandbox_Reserved_486/Ligands/2&#039;&amp;gt;Ligand&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;scene name=&#039;Sandbox_Reserved_486/Hydrophobic_hydrophilic/1&#039;&amp;gt;the purple is the polar areas while the gray is hydrophobic areas&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;scene name=&#039;Sandbox_Reserved_486/Secondary_structure/1&#039;&amp;gt;Secondary Structure&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;scene name=&#039;Sandbox_Reserved_486/N_to_c_polymer/1&#039;&amp;gt;N domain to C domain in the main chains&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;scene name=&#039;Sandbox_Reserved_486/Fragment_a/1&#039;&amp;gt;Fragment A&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;scene name=&#039;Sandbox_Reserved_486/Fragment_b/1&#039;&amp;gt;Fragment B&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;scene name=&#039;Sandbox_Reserved_486/Disulfide_bonds/1&#039;&amp;gt;Disulfide Bonds&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;scene name=&#039;Sandbox_Reserved_486/Active_site/1&#039;&amp;gt;Active site&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;scene name=&#039;Sandbox_Reserved_486/Receptor_binding_site/1&#039;&amp;gt;Receptor binding site&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Mechanism ==&lt;br /&gt;
&lt;br /&gt;
[[Image:Toxin-1.jpg]]  figure 3: Mechanism of inactivation of elongation factor 2 (EF2) by diphtheria toxin &amp;lt;ref&amp;gt;Stephen, J., &amp;amp; Pietrowski, R. (1981). Bacterial toxins. (1 ed., p. 11). Washington: Van Nostrand Reinhold Co. Ltd. &amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[Image:Mech1.jpg]]&lt;br /&gt;
&lt;br /&gt;
== Medical Implications &amp;amp; Possible Application ==&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039; is the causative agent of the disease [http://en.wikipedia.org/wiki/Diphtheria Diphtheria]. The lethal dose for humans and other susceptible eukarya is .1μg of toxin per kg of body weight&amp;lt;ref&amp;gt;Oram , D., &amp;amp; Holmes, R. (2006). Diphtheria toxin. (3 ed., pp. 245-252). Burlington, San Diego, London: Academic Press publications.&amp;lt;/ref&amp;gt;  A vaccine has been made and is routinely used in first world countries as a basic immunization. The vaccine is made up of formaldehyde-treated Diphtheria toxin. However, Diphtheria toxin has been used is many other medical applications such as the drug [http://en.wikipedia.org/wiki/Denileukin_diftitox Denileukin diftitox] and cancer suppressors. Denileukin diftitox is a protein that combines &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039; and [http://en.wikipedia.org/wiki/Interleukin-2 Interleukin 2]. In some  Leukemias and Lymphomas cells express Interleukin receptors in which the drug can bind to and release the toxin within the cells.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Another application that &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039; can be used for is a cancer suppressor. In terms of the R domain of the protein which as we know binds to pro-HB-EFG receptors of the surface of cells and is translocated into the cell by endocytosis. Some scientist have made a non-toxic mutant of diphtheria toxin CRM197 which is being used to block the signaling activity of the receptor. In some cancers such as ovarian cancer, pro-HB-EFG is overexpressed and blocking the signal has shown promise in suppressing the effects of pro-HB-EFG on cancer development.&amp;lt;ref&amp;gt;Oram , D., &amp;amp; Holmes, R. (2006). Diphtheria toxin. (3 ed., pp. 245-252). Burlington, San Diego, London: Academic Press publications.&amp;lt;/ref&amp;gt; Another example, is called [http://en.wikipedia.org/wiki/Immunotoxin immunotoxins] which change the R domain to recognize a specific cell surface and kill that cell. This is being tested against different cancer cell types and has been successful.&lt;br /&gt;
&lt;br /&gt;
== References ==&lt;br /&gt;
* Parker, M. (1996). Protein toxin structure. (1 ed., pp. 25-43). Georgetown: R.G. Landes Company.&lt;br /&gt;
&lt;br /&gt;
* Stephen, J., &amp;amp; Pietrowski, R. (1981). Bacterial toxins. (1 ed., p. 11). Washington: Van Nostrand Reinhold Co. Ltd.&lt;br /&gt;
&lt;br /&gt;
* Oram , D., &amp;amp; Holmes, R. (2006). Diphtheria toxin. (3 ed., pp. 245-252). Burlington, San Diego, London: Academic Press publications.&lt;br /&gt;
&lt;br /&gt;
* Diphtheria toxin. (2011, November 25). Retrieved from &amp;lt;http://en.wikipedia.org/wiki/Diphtheria_toxin&amp;gt;&lt;br /&gt;
&lt;br /&gt;
* Murphy JR (1996). &amp;quot;Corynebacterium Diphtheriae: Diphtheria Toxin Production&amp;quot;. In Baron S et al.. Medical microbiology (4 ed.). Galveston, Texas: Univ. of Texas Medical Branch. ISBN 0-9631172-1-1.&lt;br /&gt;
&lt;br /&gt;
=== Footnotes ===&lt;br /&gt;
{{reflist}}&lt;/div&gt;</summary>
		<author><name>Brittany Smith</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_486&amp;diff=1383746</id>
		<title>Sandbox Reserved 486</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_486&amp;diff=1383746"/>
		<updated>2012-05-01T23:33:32Z</updated>

		<summary type="html">&lt;p&gt;Brittany Smith: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Sandbox_Reserved_Robert_B_Rose_1}}&lt;br /&gt;
&amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
= Diphtheria toxin =&lt;br /&gt;
&#039;&#039;&#039;Diphtheria Toxin&#039;&#039;&#039; is an exotoxin produced by the organism [http://en.wikipedia.org/wiki/Corynebacterium_diphtheriae Corynebcterium diphtheria] which has been infected by a [http://en.wikipedia.org/wiki/Bacteriophage bacteriophage] that contains the Diphtheria toxin gene. The toxin is the causative agent of [http://en.wikipedia.org/wiki/Diphtheria diphtheria]. Symptoms for Diphtheria can range from a sore throat with low-grade fever and an adherent pseudomembrane of the tonsils, pharynx, or nose to  infected skin lesions which lack a characteristic appearance.&amp;lt;ref&amp;gt;http://www.cdc.gov/ncidod/dbmd/diseaseinfo/diptheria_t.htm &amp;lt;/ref&amp;gt; The toxin is distributed to distant organs by the circulatory system and may cause paralysis and congestive heart failure.&amp;lt;ref&amp;gt;http://www.ncbi.nlm.nih.gov/books/NBK7971/ &amp;lt;/ref&amp;gt;  The toxin attacks and kills eukaryotic cells by inactivating the [http://en.wikipedia.org/wiki/Elongation_factor Elongation factor] (&#039;&#039;&#039;EF-2&#039;&#039;&#039;) in translation. EF-2 allows for translocation of the peptidyl-tRNA from the A-site to the P-site, which in turn frees the A site for another aminoacyl-tRNA to bind. By inactivating the elongation factor 2 during translation the protein being made cannot be completed and therefore becomes nonfunctional. The toxin is in a &#039;&#039;&#039;class of A-B&#039;&#039;&#039; which includes cholera toxin, &#039;&#039;Escherichia coli&#039;&#039; heat labile enterotoxin, &#039;&#039;Pseudomonas aeruginosa&#039;&#039; exotoxin A, tetanus, botulinum neurotoxins, and Shiga toxin. A-B class is characterized by two functionally distinct components such as component A is the catalytic components while component B does the receptor binding function.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;Structure load=&#039;1mdt&#039; size=&#039;500&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;Diphtheria toxin structure&#039; scene=&#039;Insert optional scene name here&#039; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== History ==&lt;br /&gt;
Scientist have made efforts since at least the 1740&#039;s to find the caustion and cure for &#039;&#039;&#039;diphtheria toxin&#039;&#039;&#039;. It wasn&#039;t until Koch&#039;s devolpment of medical microbiology and [http://en.wikipedia.org/wiki/Koch&#039;s_postulates Koch&#039;s postulates] that it was even possible for progression towards understanding the molecular causes. It was later in Koch&#039;s laboratory that Friedrich Loeffler isolated a bacteria from a patient that died from &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039;. Koch and Friedrich later inoculated 23 guinea pigs with the isolated bacteria and they all died in two to five days. Loeffler had another observation that only the isolated bacteria from the pigs were growing at the site of inoculation. Therefore, he came to the conclusion that the bacteria isolated was the causation of the &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039;. In Pasture institute in Paris, both Emile Roux and Alexandre Yersin were able to isolate the toxin by growing a pure culture of &#039;&#039;Diphtheria bacilli&#039;&#039; and forcing them through a porcelain filter. This allowed to obtain no bacteria and only the toxin. The toxin was injected into laboratory animals and caused the same symptoms of &#039;&#039;Diphtheria bacilli&#039;&#039;. It wasn&#039;t until sixty-five years later that protein crystals were produced and the structure obtained. [http://en.wikipedia.org/wiki/Emil_Adolf_von_Behring Emil von Behring] published a paper with the discovery of diphtheria antitoxin one week after Koch found out the resistance gained by vaccination from &#039;&#039;Diphtheria bacilli&#039;&#039;. This lead to elimination of the disease diphtheria in developing countries.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Von Behring received a Nobel Prize for the antitoxin which later would be known as antibodies against &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039;. The next vaccine made was one mixed of toxin and antitoxin. The antitoxin relieved the harmful effects of the toxin which was the real vaccine. This was later replaced in 1923 with a vaccine of a formaldehyde-treated Diphtheria toxin. Today in developing countries people get routine vaccinations so that diphtheria is unknown.&lt;br /&gt;
&lt;br /&gt;
== Structure ==&lt;br /&gt;
&lt;br /&gt;
Diphtheria toxin is a protein made of 535 amino acids that makes up two fragments A &amp;amp; B. That contain C, T, and R domains that have different functions.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;scene name=&#039;Sandbox_Reserved_486/Ligands/2&#039;&amp;gt;Ligand&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;scene name=&#039;Sandbox_Reserved_486/Hydrophobic_hydrophilic/1&#039;&amp;gt;the purple is the polar areas while the gray is hydrophobic areas&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;scene name=&#039;Sandbox_Reserved_486/Secondary_structure/1&#039;&amp;gt;Secondary Structure&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;scene name=&#039;Sandbox_Reserved_486/N_to_c_polymer/1&#039;&amp;gt;N domain to C domain in the main chains&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;scene name=&#039;Sandbox_Reserved_486/Fragment_a/1&#039;&amp;gt;Fragment A&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;scene name=&#039;Sandbox_Reserved_486/Fragment_b/1&#039;&amp;gt;Fragment B&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;scene name=&#039;Sandbox_Reserved_486/Disulfide_bonds/1&#039;&amp;gt;Disulfide Bonds&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;scene name=&#039;Sandbox_Reserved_486/Active_site/1&#039;&amp;gt;Active site&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;scene name=&#039;Sandbox_Reserved_486/Receptor_binding_site/1&#039;&amp;gt;Receptor binding site&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Mechanism ==&lt;br /&gt;
&lt;br /&gt;
[[Image:Toxin-1.jpg]]  figure 3: Mechanism of inactivation of elongation factor 2 (EF2) by diphtheria toxin &amp;lt;ref&amp;gt;Stephen, J., &amp;amp; Pietrowski, R. (1981). Bacterial toxins. (1 ed., p. 11). Washington: Van Nostrand Reinhold Co. Ltd. &amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== Medical Implications &amp;amp; Possible Application ==&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039; is the causative agent of the disease [http://en.wikipedia.org/wiki/Diphtheria Diphtheria]. The lethal dose for humans and other susceptible eukarya is .1μg of toxin per kg of body weight&amp;lt;ref&amp;gt;Oram , D., &amp;amp; Holmes, R. (2006). Diphtheria toxin. (3 ed., pp. 245-252). Burlington, San Diego, London: Academic Press publications.&amp;lt;/ref&amp;gt;  A vaccine has been made and is routinely used in first world countries as a basic immunization. The vaccine is made up of formaldehyde-treated Diphtheria toxin. However, Diphtheria toxin has been used is many other medical applications such as the drug [http://en.wikipedia.org/wiki/Denileukin_diftitox Denileukin diftitox] and cancer suppressors. Denileukin diftitox is a protein that combines &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039; and [http://en.wikipedia.org/wiki/Interleukin-2 Interleukin 2]. In some  Leukemias and Lymphomas cells express Interleukin receptors in which the drug can bind to and release the toxin within the cells.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Another application that &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039; can be used for is a cancer suppressor. In terms of the R domain of the protein which as we know binds to pro-HB-EFG receptors of the surface of cells and is translocated into the cell by endocytosis. Some scientist have made a non-toxic mutant of diphtheria toxin CRM197 which is being used to block the signaling activity of the receptor. In some cancers such as ovarian cancer, pro-HB-EFG is overexpressed and blocking the signal has shown promise in suppressing the effects of pro-HB-EFG on cancer development.&amp;lt;ref&amp;gt;Oram , D., &amp;amp; Holmes, R. (2006). Diphtheria toxin. (3 ed., pp. 245-252). Burlington, San Diego, London: Academic Press publications.&amp;lt;/ref&amp;gt; Another example, is called [http://en.wikipedia.org/wiki/Immunotoxin immunotoxins] which change the R domain to recognize a specific cell surface and kill that cell. This is being tested against different cancer cell types and has been successful.&lt;br /&gt;
&lt;br /&gt;
== References ==&lt;br /&gt;
* Parker, M. (1996). Protein toxin structure. (1 ed., pp. 25-43). Georgetown: R.G. Landes Company.&lt;br /&gt;
&lt;br /&gt;
* Stephen, J., &amp;amp; Pietrowski, R. (1981). Bacterial toxins. (1 ed., p. 11). Washington: Van Nostrand Reinhold Co. Ltd.&lt;br /&gt;
&lt;br /&gt;
* Oram , D., &amp;amp; Holmes, R. (2006). Diphtheria toxin. (3 ed., pp. 245-252). Burlington, San Diego, London: Academic Press publications.&lt;br /&gt;
&lt;br /&gt;
* Diphtheria toxin. (2011, November 25). Retrieved from &amp;lt;http://en.wikipedia.org/wiki/Diphtheria_toxin&amp;gt;&lt;br /&gt;
&lt;br /&gt;
* Murphy JR (1996). &amp;quot;Corynebacterium Diphtheriae: Diphtheria Toxin Production&amp;quot;. In Baron S et al.. Medical microbiology (4 ed.). Galveston, Texas: Univ. of Texas Medical Branch. ISBN 0-9631172-1-1.&lt;br /&gt;
&lt;br /&gt;
=== Footnotes ===&lt;br /&gt;
{{reflist}}&lt;/div&gt;</summary>
		<author><name>Brittany Smith</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_486&amp;diff=1383745</id>
		<title>Sandbox Reserved 486</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_486&amp;diff=1383745"/>
		<updated>2012-05-01T23:32:42Z</updated>

		<summary type="html">&lt;p&gt;Brittany Smith: /* Mechanism */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Sandbox_Reserved_Robert_B_Rose_1}}&lt;br /&gt;
&amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
= Diphtheria toxin =&lt;br /&gt;
&#039;&#039;&#039;Diphtheria Toxin&#039;&#039;&#039; is an exotoxin produced by the organism [http://en.wikipedia.org/wiki/Corynebacterium_diphtheriae Corynebcterium diphtheria] which has been infected by a [http://en.wikipedia.org/wiki/Bacteriophage bacteriophage] that contains the Diphtheria toxin gene. The toxin is the causative agent of [http://en.wikipedia.org/wiki/Diphtheria diphtheria]. Symptoms for Diphtheria can range from a sore throat with low-grade fever and an adherent pseudomembrane of the tonsils, pharynx, or nose to  infected skin lesions which lack a characteristic appearance.&amp;lt;ref&amp;gt;http://www.cdc.gov/ncidod/dbmd/diseaseinfo/diptheria_t.htm &amp;lt;/ref&amp;gt; The toxin is distributed to distant organs by the circulatory system and may cause paralysis and congestive heart failure.&amp;lt;ref&amp;gt;http://www.ncbi.nlm.nih.gov/books/NBK7971/ &amp;lt;/ref&amp;gt;  The toxin attacks and kills eukaryotic cells by inactivating the [http://en.wikipedia.org/wiki/Elongation_factor Elongation factor] (&#039;&#039;&#039;EF-2&#039;&#039;&#039;) in translation. EF-2 allows for translocation of the peptidyl-tRNA from the A-site to the P-site, which in turn frees the A site for another aminoacyl-tRNA to bind. By inactivating the elongation factor 2 during translation the protein being made cannot be completed and therefore becomes nonfunctional. The toxin is in a &#039;&#039;&#039;class of A-B&#039;&#039;&#039; which includes cholera toxin, &#039;&#039;Escherichia coli&#039;&#039; heat labile enterotoxin, &#039;&#039;Pseudomonas aeruginosa&#039;&#039; exotoxin A, tetanus, botulinum neurotoxins, and Shiga toxin. A-B class is characterized by two functionally distinct components such as component A is the catalytic components while component B does the receptor binding function.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;Structure load=&#039;1mdt&#039; size=&#039;500&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;Diphtheria toxin structure&#039; scene=&#039;Insert optional scene name here&#039; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== History ==&lt;br /&gt;
Scientist have made efforts since at least the 1740&#039;s to find the caustion and cure for &#039;&#039;&#039;diphtheria toxin&#039;&#039;&#039;. It wasn&#039;t until Koch&#039;s devolpment of medical microbiology and [http://en.wikipedia.org/wiki/Koch&#039;s_postulates Koch&#039;s postulates] that it was even possible for progression towards understanding the molecular causes. It was later in Koch&#039;s laboratory that Friedrich Loeffler isolated a bacteria from a patient that died from &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039;. Koch and Friedrich later inoculated 23 guinea pigs with the isolated bacteria and they all died in two to five days. Loeffler had another observation that only the isolated bacteria from the pigs were growing at the site of inoculation. Therefore, he came to the conclusion that the bacteria isolated was the causation of the &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039;. In Pasture institute in Paris, both Emile Roux and Alexandre Yersin were able to isolate the toxin by growing a pure culture of &#039;&#039;Diphtheria bacilli&#039;&#039; and forcing them through a porcelain filter. This allowed to obtain no bacteria and only the toxin. The toxin was injected into laboratory animals and caused the same symptoms of &#039;&#039;Diphtheria bacilli&#039;&#039;. It wasn&#039;t until sixty-five years later that protein crystals were produced and the structure obtained. [http://en.wikipedia.org/wiki/Emil_Adolf_von_Behring Emil von Behring] published a paper with the discovery of diphtheria antitoxin one week after Koch found out the resistance gained by vaccination from &#039;&#039;Diphtheria bacilli&#039;&#039;. This lead to elimination of the disease diphtheria in developing countries.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Von Behring received a Nobel Prize for the antitoxin which later would be known as antibodies against &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039;. The next vaccine made was one mixed of toxin and antitoxin. The antitoxin relieved the harmful effects of the toxin which was the real vaccine. This was later replaced in 1923 with a vaccine of a formaldehyde-treated Diphtheria toxin. Today in developing countries people get routine vaccinations so that diphtheria is unknown.&lt;br /&gt;
&lt;br /&gt;
== Structure ==&lt;br /&gt;
&lt;br /&gt;
Diphtheria toxin is a protein made of 535 amino acids that makes up two fragments A &amp;amp; B. That contain C, T, and R domains that have different functions.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;scene name=&#039;Sandbox_Reserved_486/Ligands/2&#039;&amp;gt;Ligand&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;scene name=&#039;Sandbox_Reserved_486/Hydrophobic_hydrophilic/1&#039;&amp;gt;the purple is the polar areas while the gray is hydrophobic areas&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;scene name=&#039;Sandbox_Reserved_486/Secondary_structure/1&#039;&amp;gt;Secondary Structure&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;scene name=&#039;Sandbox_Reserved_486/N_to_c_polymer/1&#039;&amp;gt;N domain to C domain in the main chains&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;scene name=&#039;Sandbox_Reserved_486/Fragment_a/1&#039;&amp;gt;Fragment A&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;scene name=&#039;Sandbox_Reserved_486/Fragment_b/1&#039;&amp;gt;Fragment B&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;scene name=&#039;Sandbox_Reserved_486/Disulfide_bonds/1&#039;&amp;gt;Disulfide Bonds&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;scene name=&#039;Sandbox_Reserved_486/Active_site/1&#039;&amp;gt;Active site&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;scene name=&#039;Sandbox_Reserved_486/Receptor_binding_site/1&#039;&amp;gt;Receptor binding site&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Mechanism ==&lt;br /&gt;
&lt;br /&gt;
[[Image:Toxin-1.jpg]]  figure 3: Mechanism of inactivation of elongation factor 2 (EF2) by diphtheria toxin &amp;lt;ref&amp;gt;Stephen, J., &amp;amp; Pietrowski, R. (1981). Bacterial toxins. (1 ed., p. 11). Washington: Van Nostrand Reinhold Co. Ltd. &amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
[[Image:Page35-2.jpg]]&lt;br /&gt;
&lt;br /&gt;
== Medical Implications &amp;amp; Possible Application ==&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039; is the causative agent of the disease [http://en.wikipedia.org/wiki/Diphtheria Diphtheria]. The lethal dose for humans and other susceptible eukarya is .1μg of toxin per kg of body weight&amp;lt;ref&amp;gt;Oram , D., &amp;amp; Holmes, R. (2006). Diphtheria toxin. (3 ed., pp. 245-252). Burlington, San Diego, London: Academic Press publications.&amp;lt;/ref&amp;gt;  A vaccine has been made and is routinely used in first world countries as a basic immunization. The vaccine is made up of formaldehyde-treated Diphtheria toxin. However, Diphtheria toxin has been used is many other medical applications such as the drug [http://en.wikipedia.org/wiki/Denileukin_diftitox Denileukin diftitox] and cancer suppressors. Denileukin diftitox is a protein that combines &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039; and [http://en.wikipedia.org/wiki/Interleukin-2 Interleukin 2]. In some  Leukemias and Lymphomas cells express Interleukin receptors in which the drug can bind to and release the toxin within the cells.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Another application that &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039; can be used for is a cancer suppressor. In terms of the R domain of the protein which as we know binds to pro-HB-EFG receptors of the surface of cells and is translocated into the cell by endocytosis. Some scientist have made a non-toxic mutant of diphtheria toxin CRM197 which is being used to block the signaling activity of the receptor. In some cancers such as ovarian cancer, pro-HB-EFG is overexpressed and blocking the signal has shown promise in suppressing the effects of pro-HB-EFG on cancer development.&amp;lt;ref&amp;gt;Oram , D., &amp;amp; Holmes, R. (2006). Diphtheria toxin. (3 ed., pp. 245-252). Burlington, San Diego, London: Academic Press publications.&amp;lt;/ref&amp;gt; Another example, is called [http://en.wikipedia.org/wiki/Immunotoxin immunotoxins] which change the R domain to recognize a specific cell surface and kill that cell. This is being tested against different cancer cell types and has been successful.&lt;br /&gt;
&lt;br /&gt;
== References ==&lt;br /&gt;
* Parker, M. (1996). Protein toxin structure. (1 ed., pp. 25-43). Georgetown: R.G. Landes Company.&lt;br /&gt;
&lt;br /&gt;
* Stephen, J., &amp;amp; Pietrowski, R. (1981). Bacterial toxins. (1 ed., p. 11). Washington: Van Nostrand Reinhold Co. Ltd.&lt;br /&gt;
&lt;br /&gt;
* Oram , D., &amp;amp; Holmes, R. (2006). Diphtheria toxin. (3 ed., pp. 245-252). Burlington, San Diego, London: Academic Press publications.&lt;br /&gt;
&lt;br /&gt;
* Diphtheria toxin. (2011, November 25). Retrieved from &amp;lt;http://en.wikipedia.org/wiki/Diphtheria_toxin&amp;gt;&lt;br /&gt;
&lt;br /&gt;
* Murphy JR (1996). &amp;quot;Corynebacterium Diphtheriae: Diphtheria Toxin Production&amp;quot;. In Baron S et al.. Medical microbiology (4 ed.). Galveston, Texas: Univ. of Texas Medical Branch. ISBN 0-9631172-1-1.&lt;br /&gt;
&lt;br /&gt;
=== Footnotes ===&lt;br /&gt;
{{reflist}}&lt;/div&gt;</summary>
		<author><name>Brittany Smith</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_486&amp;diff=1383741</id>
		<title>Sandbox Reserved 486</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_486&amp;diff=1383741"/>
		<updated>2012-05-01T23:26:55Z</updated>

		<summary type="html">&lt;p&gt;Brittany Smith: /* Structure */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Sandbox_Reserved_Robert_B_Rose_1}}&lt;br /&gt;
&amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
= Diphtheria toxin =&lt;br /&gt;
&#039;&#039;&#039;Diphtheria Toxin&#039;&#039;&#039; is an exotoxin produced by the organism [http://en.wikipedia.org/wiki/Corynebacterium_diphtheriae Corynebcterium diphtheria] which has been infected by a [http://en.wikipedia.org/wiki/Bacteriophage bacteriophage] that contains the Diphtheria toxin gene. The toxin is the causative agent of [http://en.wikipedia.org/wiki/Diphtheria diphtheria]. Symptoms for Diphtheria can range from a sore throat with low-grade fever and an adherent pseudomembrane of the tonsils, pharynx, or nose to  infected skin lesions which lack a characteristic appearance.&amp;lt;ref&amp;gt;http://www.cdc.gov/ncidod/dbmd/diseaseinfo/diptheria_t.htm &amp;lt;/ref&amp;gt; The toxin is distributed to distant organs by the circulatory system and may cause paralysis and congestive heart failure.&amp;lt;ref&amp;gt;http://www.ncbi.nlm.nih.gov/books/NBK7971/ &amp;lt;/ref&amp;gt;  The toxin attacks and kills eukaryotic cells by inactivating the [http://en.wikipedia.org/wiki/Elongation_factor Elongation factor] (&#039;&#039;&#039;EF-2&#039;&#039;&#039;) in translation. EF-2 allows for translocation of the peptidyl-tRNA from the A-site to the P-site, which in turn frees the A site for another aminoacyl-tRNA to bind. By inactivating the elongation factor 2 during translation the protein being made cannot be completed and therefore becomes nonfunctional. The toxin is in a &#039;&#039;&#039;class of A-B&#039;&#039;&#039; which includes cholera toxin, &#039;&#039;Escherichia coli&#039;&#039; heat labile enterotoxin, &#039;&#039;Pseudomonas aeruginosa&#039;&#039; exotoxin A, tetanus, botulinum neurotoxins, and Shiga toxin. A-B class is characterized by two functionally distinct components such as component A is the catalytic components while component B does the receptor binding function.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;Structure load=&#039;1mdt&#039; size=&#039;500&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;Diphtheria toxin structure&#039; scene=&#039;Insert optional scene name here&#039; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== History ==&lt;br /&gt;
Scientist have made efforts since at least the 1740&#039;s to find the caustion and cure for &#039;&#039;&#039;diphtheria toxin&#039;&#039;&#039;. It wasn&#039;t until Koch&#039;s devolpment of medical microbiology and [http://en.wikipedia.org/wiki/Koch&#039;s_postulates Koch&#039;s postulates] that it was even possible for progression towards understanding the molecular causes. It was later in Koch&#039;s laboratory that Friedrich Loeffler isolated a bacteria from a patient that died from &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039;. Koch and Friedrich later inoculated 23 guinea pigs with the isolated bacteria and they all died in two to five days. Loeffler had another observation that only the isolated bacteria from the pigs were growing at the site of inoculation. Therefore, he came to the conclusion that the bacteria isolated was the causation of the &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039;. In Pasture institute in Paris, both Emile Roux and Alexandre Yersin were able to isolate the toxin by growing a pure culture of &#039;&#039;Diphtheria bacilli&#039;&#039; and forcing them through a porcelain filter. This allowed to obtain no bacteria and only the toxin. The toxin was injected into laboratory animals and caused the same symptoms of &#039;&#039;Diphtheria bacilli&#039;&#039;. It wasn&#039;t until sixty-five years later that protein crystals were produced and the structure obtained. [http://en.wikipedia.org/wiki/Emil_Adolf_von_Behring Emil von Behring] published a paper with the discovery of diphtheria antitoxin one week after Koch found out the resistance gained by vaccination from &#039;&#039;Diphtheria bacilli&#039;&#039;. This lead to elimination of the disease diphtheria in developing countries.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Von Behring received a Nobel Prize for the antitoxin which later would be known as antibodies against &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039;. The next vaccine made was one mixed of toxin and antitoxin. The antitoxin relieved the harmful effects of the toxin which was the real vaccine. This was later replaced in 1923 with a vaccine of a formaldehyde-treated Diphtheria toxin. Today in developing countries people get routine vaccinations so that diphtheria is unknown.&lt;br /&gt;
&lt;br /&gt;
== Structure ==&lt;br /&gt;
&lt;br /&gt;
Diphtheria toxin is a protein made of 535 amino acids that makes up two fragments A &amp;amp; B. That contain C, T, and R domains that have different functions.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;scene name=&#039;Sandbox_Reserved_486/Ligands/2&#039;&amp;gt;Ligand&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;scene name=&#039;Sandbox_Reserved_486/Hydrophobic_hydrophilic/1&#039;&amp;gt;the purple is the polar areas while the gray is hydrophobic areas&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;scene name=&#039;Sandbox_Reserved_486/Secondary_structure/1&#039;&amp;gt;Secondary Structure&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;scene name=&#039;Sandbox_Reserved_486/N_to_c_polymer/1&#039;&amp;gt;N domain to C domain in the main chains&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;scene name=&#039;Sandbox_Reserved_486/Fragment_a/1&#039;&amp;gt;Fragment A&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;scene name=&#039;Sandbox_Reserved_486/Fragment_b/1&#039;&amp;gt;Fragment B&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;scene name=&#039;Sandbox_Reserved_486/Disulfide_bonds/1&#039;&amp;gt;Disulfide Bonds&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;scene name=&#039;Sandbox_Reserved_486/Active_site/1&#039;&amp;gt;Active site&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;scene name=&#039;Sandbox_Reserved_486/Receptor_binding_site/1&#039;&amp;gt;Receptor binding site&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Mechanism ==&lt;br /&gt;
&lt;br /&gt;
[[Image:Toxin-1.jpg]]  figure 3: Mechanism of inactivation of elongation factor 2 (EF2) by diphtheria toxin &amp;lt;ref&amp;gt;Stephen, J., &amp;amp; Pietrowski, R. (1981). Bacterial toxins. (1 ed., p. 11). Washington: Van Nostrand Reinhold Co. Ltd. &amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== Medical Implications &amp;amp; Possible Application ==&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039; is the causative agent of the disease [http://en.wikipedia.org/wiki/Diphtheria Diphtheria]. The lethal dose for humans and other susceptible eukarya is .1μg of toxin per kg of body weight&amp;lt;ref&amp;gt;Oram , D., &amp;amp; Holmes, R. (2006). Diphtheria toxin. (3 ed., pp. 245-252). Burlington, San Diego, London: Academic Press publications.&amp;lt;/ref&amp;gt;  A vaccine has been made and is routinely used in first world countries as a basic immunization. The vaccine is made up of formaldehyde-treated Diphtheria toxin. However, Diphtheria toxin has been used is many other medical applications such as the drug [http://en.wikipedia.org/wiki/Denileukin_diftitox Denileukin diftitox] and cancer suppressors. Denileukin diftitox is a protein that combines &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039; and [http://en.wikipedia.org/wiki/Interleukin-2 Interleukin 2]. In some  Leukemias and Lymphomas cells express Interleukin receptors in which the drug can bind to and release the toxin within the cells.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Another application that &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039; can be used for is a cancer suppressor. In terms of the R domain of the protein which as we know binds to pro-HB-EFG receptors of the surface of cells and is translocated into the cell by endocytosis. Some scientist have made a non-toxic mutant of diphtheria toxin CRM197 which is being used to block the signaling activity of the receptor. In some cancers such as ovarian cancer, pro-HB-EFG is overexpressed and blocking the signal has shown promise in suppressing the effects of pro-HB-EFG on cancer development.&amp;lt;ref&amp;gt;Oram , D., &amp;amp; Holmes, R. (2006). Diphtheria toxin. (3 ed., pp. 245-252). Burlington, San Diego, London: Academic Press publications.&amp;lt;/ref&amp;gt; Another example, is called [http://en.wikipedia.org/wiki/Immunotoxin immunotoxins] which change the R domain to recognize a specific cell surface and kill that cell. This is being tested against different cancer cell types and has been successful.&lt;br /&gt;
&lt;br /&gt;
== References ==&lt;br /&gt;
* Parker, M. (1996). Protein toxin structure. (1 ed., pp. 25-43). Georgetown: R.G. Landes Company.&lt;br /&gt;
&lt;br /&gt;
* Stephen, J., &amp;amp; Pietrowski, R. (1981). Bacterial toxins. (1 ed., p. 11). Washington: Van Nostrand Reinhold Co. Ltd.&lt;br /&gt;
&lt;br /&gt;
* Oram , D., &amp;amp; Holmes, R. (2006). Diphtheria toxin. (3 ed., pp. 245-252). Burlington, San Diego, London: Academic Press publications.&lt;br /&gt;
&lt;br /&gt;
* Diphtheria toxin. (2011, November 25). Retrieved from &amp;lt;http://en.wikipedia.org/wiki/Diphtheria_toxin&amp;gt;&lt;br /&gt;
&lt;br /&gt;
* Murphy JR (1996). &amp;quot;Corynebacterium Diphtheriae: Diphtheria Toxin Production&amp;quot;. In Baron S et al.. Medical microbiology (4 ed.). Galveston, Texas: Univ. of Texas Medical Branch. ISBN 0-9631172-1-1.&lt;br /&gt;
&lt;br /&gt;
=== Footnotes ===&lt;br /&gt;
{{reflist}}&lt;/div&gt;</summary>
		<author><name>Brittany Smith</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_486&amp;diff=1383739</id>
		<title>Sandbox Reserved 486</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_486&amp;diff=1383739"/>
		<updated>2012-05-01T23:17:06Z</updated>

		<summary type="html">&lt;p&gt;Brittany Smith: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Sandbox_Reserved_Robert_B_Rose_1}}&lt;br /&gt;
&amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
= Diphtheria toxin =&lt;br /&gt;
&#039;&#039;&#039;Diphtheria Toxin&#039;&#039;&#039; is an exotoxin produced by the organism [http://en.wikipedia.org/wiki/Corynebacterium_diphtheriae Corynebcterium diphtheria] which has been infected by a [http://en.wikipedia.org/wiki/Bacteriophage bacteriophage] that contains the Diphtheria toxin gene. The toxin is the causative agent of [http://en.wikipedia.org/wiki/Diphtheria diphtheria]. Symptoms for Diphtheria can range from a sore throat with low-grade fever and an adherent pseudomembrane of the tonsils, pharynx, or nose to  infected skin lesions which lack a characteristic appearance.&amp;lt;ref&amp;gt;http://www.cdc.gov/ncidod/dbmd/diseaseinfo/diptheria_t.htm &amp;lt;/ref&amp;gt; The toxin is distributed to distant organs by the circulatory system and may cause paralysis and congestive heart failure.&amp;lt;ref&amp;gt;http://www.ncbi.nlm.nih.gov/books/NBK7971/ &amp;lt;/ref&amp;gt;  The toxin attacks and kills eukaryotic cells by inactivating the [http://en.wikipedia.org/wiki/Elongation_factor Elongation factor] (&#039;&#039;&#039;EF-2&#039;&#039;&#039;) in translation. EF-2 allows for translocation of the peptidyl-tRNA from the A-site to the P-site, which in turn frees the A site for another aminoacyl-tRNA to bind. By inactivating the elongation factor 2 during translation the protein being made cannot be completed and therefore becomes nonfunctional. The toxin is in a &#039;&#039;&#039;class of A-B&#039;&#039;&#039; which includes cholera toxin, &#039;&#039;Escherichia coli&#039;&#039; heat labile enterotoxin, &#039;&#039;Pseudomonas aeruginosa&#039;&#039; exotoxin A, tetanus, botulinum neurotoxins, and Shiga toxin. A-B class is characterized by two functionally distinct components such as component A is the catalytic components while component B does the receptor binding function.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;Structure load=&#039;1mdt&#039; size=&#039;500&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;Diphtheria toxin structure&#039; scene=&#039;Insert optional scene name here&#039; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== History ==&lt;br /&gt;
Scientist have made efforts since at least the 1740&#039;s to find the caustion and cure for &#039;&#039;&#039;diphtheria toxin&#039;&#039;&#039;. It wasn&#039;t until Koch&#039;s devolpment of medical microbiology and [http://en.wikipedia.org/wiki/Koch&#039;s_postulates Koch&#039;s postulates] that it was even possible for progression towards understanding the molecular causes. It was later in Koch&#039;s laboratory that Friedrich Loeffler isolated a bacteria from a patient that died from &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039;. Koch and Friedrich later inoculated 23 guinea pigs with the isolated bacteria and they all died in two to five days. Loeffler had another observation that only the isolated bacteria from the pigs were growing at the site of inoculation. Therefore, he came to the conclusion that the bacteria isolated was the causation of the &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039;. In Pasture institute in Paris, both Emile Roux and Alexandre Yersin were able to isolate the toxin by growing a pure culture of &#039;&#039;Diphtheria bacilli&#039;&#039; and forcing them through a porcelain filter. This allowed to obtain no bacteria and only the toxin. The toxin was injected into laboratory animals and caused the same symptoms of &#039;&#039;Diphtheria bacilli&#039;&#039;. It wasn&#039;t until sixty-five years later that protein crystals were produced and the structure obtained. [http://en.wikipedia.org/wiki/Emil_Adolf_von_Behring Emil von Behring] published a paper with the discovery of diphtheria antitoxin one week after Koch found out the resistance gained by vaccination from &#039;&#039;Diphtheria bacilli&#039;&#039;. This lead to elimination of the disease diphtheria in developing countries.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Von Behring received a Nobel Prize for the antitoxin which later would be known as antibodies against &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039;. The next vaccine made was one mixed of toxin and antitoxin. The antitoxin relieved the harmful effects of the toxin which was the real vaccine. This was later replaced in 1923 with a vaccine of a formaldehyde-treated Diphtheria toxin. Today in developing countries people get routine vaccinations so that diphtheria is unknown.&lt;br /&gt;
&lt;br /&gt;
== Structure ==&lt;br /&gt;
&lt;br /&gt;
Diphtheria toxin is a protein made of 535 amino acids that makes up two fragments A &amp;amp; B. That contain C, T, and R domains that have different functions.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;scene name=&#039;Sandbox_Reserved_486/Ligands/2&#039;&amp;gt;Ligand&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;scene name=&#039;Sandbox_Reserved_486/Hydrophobic_hydrophilic/1&#039;&amp;gt;the purple is the polar areas while the gray is hydrophobic areas&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;scene name=&#039;Sandbox_Reserved_486/Secondary_structure/1&#039;&amp;gt;Secondary Structure&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;scene name=&#039;Sandbox_Reserved_486/N_to_c_polymer/1&#039;&amp;gt;N domain to C domain in the main chains&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;scene name=&#039;Sandbox_Reserved_486/Fragment_a/1&#039;&amp;gt;Fragment A&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;scene name=&#039;Sandbox_Reserved_486/Fragment_b/1&#039;&amp;gt;Fragment B&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;scene name=&#039;Sandbox_Reserved_486/Disulfide_bonds/1&#039;&amp;gt;Disulfide Bonds&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;scene name=&#039;Sandbox_Reserved_486/Active_site/1&#039;&amp;gt;Active site&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;scene name=&#039;Sandbox_Reserved_486/Receptor_binding_site/1&#039;&amp;gt;TextToBeDisplayed&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Mechanism ==&lt;br /&gt;
&lt;br /&gt;
[[Image:Toxin-1.jpg]]  figure 3: Mechanism of inactivation of elongation factor 2 (EF2) by diphtheria toxin &amp;lt;ref&amp;gt;Stephen, J., &amp;amp; Pietrowski, R. (1981). Bacterial toxins. (1 ed., p. 11). Washington: Van Nostrand Reinhold Co. Ltd. &amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== Medical Implications &amp;amp; Possible Application ==&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039; is the causative agent of the disease [http://en.wikipedia.org/wiki/Diphtheria Diphtheria]. The lethal dose for humans and other susceptible eukarya is .1μg of toxin per kg of body weight&amp;lt;ref&amp;gt;Oram , D., &amp;amp; Holmes, R. (2006). Diphtheria toxin. (3 ed., pp. 245-252). Burlington, San Diego, London: Academic Press publications.&amp;lt;/ref&amp;gt;  A vaccine has been made and is routinely used in first world countries as a basic immunization. The vaccine is made up of formaldehyde-treated Diphtheria toxin. However, Diphtheria toxin has been used is many other medical applications such as the drug [http://en.wikipedia.org/wiki/Denileukin_diftitox Denileukin diftitox] and cancer suppressors. Denileukin diftitox is a protein that combines &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039; and [http://en.wikipedia.org/wiki/Interleukin-2 Interleukin 2]. In some  Leukemias and Lymphomas cells express Interleukin receptors in which the drug can bind to and release the toxin within the cells.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Another application that &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039; can be used for is a cancer suppressor. In terms of the R domain of the protein which as we know binds to pro-HB-EFG receptors of the surface of cells and is translocated into the cell by endocytosis. Some scientist have made a non-toxic mutant of diphtheria toxin CRM197 which is being used to block the signaling activity of the receptor. In some cancers such as ovarian cancer, pro-HB-EFG is overexpressed and blocking the signal has shown promise in suppressing the effects of pro-HB-EFG on cancer development.&amp;lt;ref&amp;gt;Oram , D., &amp;amp; Holmes, R. (2006). Diphtheria toxin. (3 ed., pp. 245-252). Burlington, San Diego, London: Academic Press publications.&amp;lt;/ref&amp;gt; Another example, is called [http://en.wikipedia.org/wiki/Immunotoxin immunotoxins] which change the R domain to recognize a specific cell surface and kill that cell. This is being tested against different cancer cell types and has been successful.&lt;br /&gt;
&lt;br /&gt;
== References ==&lt;br /&gt;
* Parker, M. (1996). Protein toxin structure. (1 ed., pp. 25-43). Georgetown: R.G. Landes Company.&lt;br /&gt;
&lt;br /&gt;
* Stephen, J., &amp;amp; Pietrowski, R. (1981). Bacterial toxins. (1 ed., p. 11). Washington: Van Nostrand Reinhold Co. Ltd.&lt;br /&gt;
&lt;br /&gt;
* Oram , D., &amp;amp; Holmes, R. (2006). Diphtheria toxin. (3 ed., pp. 245-252). Burlington, San Diego, London: Academic Press publications.&lt;br /&gt;
&lt;br /&gt;
* Diphtheria toxin. (2011, November 25). Retrieved from &amp;lt;http://en.wikipedia.org/wiki/Diphtheria_toxin&amp;gt;&lt;br /&gt;
&lt;br /&gt;
* Murphy JR (1996). &amp;quot;Corynebacterium Diphtheriae: Diphtheria Toxin Production&amp;quot;. In Baron S et al.. Medical microbiology (4 ed.). Galveston, Texas: Univ. of Texas Medical Branch. ISBN 0-9631172-1-1.&lt;br /&gt;
&lt;br /&gt;
=== Footnotes ===&lt;br /&gt;
{{reflist}}&lt;/div&gt;</summary>
		<author><name>Brittany Smith</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_486&amp;diff=1383722</id>
		<title>Sandbox Reserved 486</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_486&amp;diff=1383722"/>
		<updated>2012-05-01T22:40:08Z</updated>

		<summary type="html">&lt;p&gt;Brittany Smith: &lt;/p&gt;
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= Diphtheria toxin =&lt;br /&gt;
&#039;&#039;&#039;Diphtheria Toxin&#039;&#039;&#039; is an exotoxin produced by the organism [http://en.wikipedia.org/wiki/Corynebacterium_diphtheriae Corynebcterium diphtheria] which has been infected by a [http://en.wikipedia.org/wiki/Bacteriophage bacteriophage] that contains the Diphtheria toxin gene. The toxin is the causative agent of [http://en.wikipedia.org/wiki/Diphtheria diphtheria]. Symptoms for Diphtheria can range from a sore throat with low-grade fever and an adherent pseudomembrane of the tonsils, pharynx, or nose to  infected skin lesions which lack a characteristic appearance.&amp;lt;ref&amp;gt;http://www.cdc.gov/ncidod/dbmd/diseaseinfo/diptheria_t.htm &amp;lt;/ref&amp;gt; The toxin is distributed to distant organs by the circulatory system and may cause paralysis and congestive heart failure.&amp;lt;ref&amp;gt;http://www.ncbi.nlm.nih.gov/books/NBK7971/ &amp;lt;/ref&amp;gt;  The toxin attacks and kills eukaryotic cells by inactivating the [http://en.wikipedia.org/wiki/Elongation_factor Elongation factor] (&#039;&#039;&#039;EF-2&#039;&#039;&#039;) in translation. EF-2 allows for translocation of the peptidyl-tRNA from the A-site to the P-site, which in turn frees the A site for another aminoacyl-tRNA to bind. By inactivating the elongation factor 2 during translation the protein being made cannot be completed and therefore becomes nonfunctional. The toxin is in a &#039;&#039;&#039;class of A-B&#039;&#039;&#039; which includes cholera toxin, &#039;&#039;Escherichia coli&#039;&#039; heat labile enterotoxin, &#039;&#039;Pseudomonas aeruginosa&#039;&#039; exotoxin A, tetanus, botulinum neurotoxins, and Shiga toxin. A-B class is characterized by two functionally distinct components such as component A is the catalytic components while component B does the receptor binding function.&lt;br /&gt;
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&amp;lt;Structure load=&#039;1mdt&#039; size=&#039;500&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;Diphtheria toxin structure&#039; scene=&#039;Insert optional scene name here&#039; /&amp;gt;&lt;br /&gt;
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== History ==&lt;br /&gt;
Scientist have made efforts since at least the 1740&#039;s to find the caustion and cure for &#039;&#039;&#039;diphtheria toxin&#039;&#039;&#039;. It wasn&#039;t until Koch&#039;s devolpment of medical microbiology and [http://en.wikipedia.org/wiki/Koch&#039;s_postulates Koch&#039;s postulates] that it was even possible for progression towards understanding the molecular causes. It was later in Koch&#039;s laboratory that Friedrich Loeffler isolated a bacteria from a patient that died from &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039;. Koch and Friedrich later inoculated 23 guinea pigs with the isolated bacteria and they all died in two to five days. Loeffler had another observation that only the isolated bacteria from the pigs were growing at the site of inoculation. Therefore, he came to the conclusion that the bacteria isolated was the causation of the &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039;. In Pasture institute in Paris, both Emile Roux and Alexandre Yersin were able to isolate the toxin by growing a pure culture of &#039;&#039;Diphtheria bacilli&#039;&#039; and forcing them through a porcelain filter. This allowed to obtain no bacteria and only the toxin. The toxin was injected into laboratory animals and caused the same symptoms of &#039;&#039;Diphtheria bacilli&#039;&#039;. It wasn&#039;t until sixty-five years later that protein crystals were produced and the structure obtained. [http://en.wikipedia.org/wiki/Emil_Adolf_von_Behring Emil von Behring] published a paper with the discovery of diphtheria antitoxin one week after Koch found out the resistance gained by vaccination from &#039;&#039;Diphtheria bacilli&#039;&#039;. This lead to elimination of the disease diphtheria in developing countries.&lt;br /&gt;
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Von Behring received a Nobel Prize for the antitoxin which later would be known as antibodies against &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039;. The next vaccine made was one mixed of toxin and antitoxin. The antitoxin relieved the harmful effects of the toxin which was the real vaccine. This was later replaced in 1923 with a vaccine of a formaldehyde-treated Diphtheria toxin. Today in developing countries people get routine vaccinations so that diphtheria is unknown.&lt;br /&gt;
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== Structure ==&lt;br /&gt;
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Diphtheria toxin is a protein made of 535 amino acids that makes up two fragments A &amp;amp; B. That contain C, T, and R domains that have different functions.&lt;br /&gt;
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&amp;lt;scene name=&#039;Sandbox_Reserved_486/N_to_c_polymer/1&#039;&amp;gt;N domain to C domain in the main chains&amp;lt;/scene&amp;gt;&lt;br /&gt;
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&amp;lt;scene name=&#039;Sandbox_Reserved_486/Fragment_a/1&#039;&amp;gt;Fragment A&amp;lt;/scene&amp;gt;&lt;br /&gt;
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&amp;lt;scene name=&#039;Sandbox_Reserved_486/Fragment_b/1&#039;&amp;gt;Fragment B&amp;lt;/scene&amp;gt;&lt;br /&gt;
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&amp;lt;scene name=&#039;Sandbox_Reserved_486/Active_site/1&#039;&amp;gt;Active site&amp;lt;/scene&amp;gt;&lt;br /&gt;
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== Mechanism ==&lt;br /&gt;
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[[Image:Toxin-1.jpg]]  figure 3: Mechanism of inactivation of elongation factor 2 (EF2) by diphtheria toxin &amp;lt;ref&amp;gt;Stephen, J., &amp;amp; Pietrowski, R. (1981). Bacterial toxins. (1 ed., p. 11). Washington: Van Nostrand Reinhold Co. Ltd. &amp;lt;/ref&amp;gt;&lt;br /&gt;
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== Medical Implications &amp;amp; Possible Application ==&lt;br /&gt;
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&#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039; is the causative agent of the disease [http://en.wikipedia.org/wiki/Diphtheria Diphtheria]. The lethal dose for humans and other susceptible eukarya is .1μg of toxin per kg of body weight&amp;lt;ref&amp;gt;Oram , D., &amp;amp; Holmes, R. (2006). Diphtheria toxin. (3 ed., pp. 245-252). Burlington, San Diego, London: Academic Press publications.&amp;lt;/ref&amp;gt;  A vaccine has been made and is routinely used in first world countries as a basic immunization. The vaccine is made up of formaldehyde-treated Diphtheria toxin. However, Diphtheria toxin has been used is many other medical applications such as the drug [http://en.wikipedia.org/wiki/Denileukin_diftitox Denileukin diftitox] and cancer suppressors. Denileukin diftitox is a protein that combines &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039; and [http://en.wikipedia.org/wiki/Interleukin-2 Interleukin 2]. In some  Leukemias and Lymphomas cells express Interleukin receptors in which the drug can bind to and release the toxin within the cells.&lt;br /&gt;
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Another application that &#039;&#039;&#039;Diphtheria toxin&#039;&#039;&#039; can be used for is a cancer suppressor. In terms of the R domain of the protein which as we know binds to pro-HB-EFG receptors of the surface of cells and is translocated into the cell by endocytosis. Some scientist have made a non-toxic mutant of diphtheria toxin CRM197 which is being used to block the signaling activity of the receptor. In some cancers such as ovarian cancer, pro-HB-EFG is overexpressed and blocking the signal has shown promise in suppressing the effects of pro-HB-EFG on cancer development.&amp;lt;ref&amp;gt;Oram , D., &amp;amp; Holmes, R. (2006). Diphtheria toxin. (3 ed., pp. 245-252). Burlington, San Diego, London: Academic Press publications.&amp;lt;/ref&amp;gt; Another example, is called [http://en.wikipedia.org/wiki/Immunotoxin immunotoxins] which change the R domain to recognize a specific cell surface and kill that cell. This is being tested against different cancer cell types and has been successful.&lt;br /&gt;
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== References ==&lt;br /&gt;
* Parker, M. (1996). Protein toxin structure. (1 ed., pp. 25-43). Georgetown: R.G. Landes Company.&lt;br /&gt;
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* Stephen, J., &amp;amp; Pietrowski, R. (1981). Bacterial toxins. (1 ed., p. 11). Washington: Van Nostrand Reinhold Co. Ltd.&lt;br /&gt;
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* Oram , D., &amp;amp; Holmes, R. (2006). Diphtheria toxin. (3 ed., pp. 245-252). Burlington, San Diego, London: Academic Press publications.&lt;br /&gt;
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* Diphtheria toxin. (2011, November 25). Retrieved from &amp;lt;http://en.wikipedia.org/wiki/Diphtheria_toxin&amp;gt;&lt;br /&gt;
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* Murphy JR (1996). &amp;quot;Corynebacterium Diphtheriae: Diphtheria Toxin Production&amp;quot;. In Baron S et al.. Medical microbiology (4 ed.). Galveston, Texas: Univ. of Texas Medical Branch. ISBN 0-9631172-1-1.&lt;br /&gt;
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=== Footnotes ===&lt;br /&gt;
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		<author><name>Brittany Smith</name></author>
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