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	<id>https://proteopedia.org/api.php?action=feedcontributions&amp;feedformat=atom&amp;user=Chengfeng+Ren</id>
	<title>Proteopedia - User contributions [en]</title>
	<link rel="self" type="application/atom+xml" href="https://proteopedia.org/api.php?action=feedcontributions&amp;feedformat=atom&amp;user=Chengfeng+Ren"/>
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		<id>https://proteopedia.org/index.php?title=User:Chengfeng_Ren/IFN_beta_1a&amp;diff=2107896</id>
		<title>User:Chengfeng Ren/IFN beta 1a</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=User:Chengfeng_Ren/IFN_beta_1a&amp;diff=2107896"/>
		<updated>2014-12-18T02:26:10Z</updated>

		<summary type="html">&lt;p&gt;Chengfeng Ren: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;Structure load=&#039;Insert PDB code or filename here&#039; size=&#039;350&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;A zinc is in the interface between molecules A and B&#039; scene=&#039;56/566503/Interferon_dimer/2&#039; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;IFN Categories and IFNβ-1a sources&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Interferons&#039;&#039;&#039; (IFNs) are a family of helical cytokines that mediate&lt;br /&gt;
antiviral, antiproliferative, and immune modulatory activities in&lt;br /&gt;
response to biological and chemical stimuli. Two types of IFN are recognized on   &lt;br /&gt;
the basis of their physical and biological properties; type I, which   &lt;br /&gt;
contains the monomeric IFNs-α,-β,-τ, and -ω, and type II, the&lt;br /&gt;
only member of which is the dimeric IFN-γ. Representatives of all&lt;br /&gt;
type I and type II IFNs are found in humans, except for IFN-τ,&lt;br /&gt;
which is found only in ruminant ungulates. There are 12 different human IFNs-α;each one&lt;br /&gt;
comprising a different subtype,although 14 different genes have&lt;br /&gt;
been identified, whereas human IFN-β, IFN-ω, and IFN-γare&lt;br /&gt;
encoded by single genes[1].&lt;br /&gt;
&lt;br /&gt;
Interferon-β has two subtyes, interferon-β-1a and interferon-β-1b. Interferon-β-1a is naturally expressed in numerous cell types in human, including &lt;br /&gt;
fibroblasts, endothelial cells, epithelial cells and various leukocytes, however,Interferon-β-1b is produced in modified E. coli.&lt;br /&gt;
&lt;br /&gt;
Here is a jpg clearly illustrating IFNs categories.&lt;br /&gt;
[[Image:IFN categories.jpg]]&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;Structure info. of IFNβ-1a&#039;&#039;&#039;==&lt;br /&gt;
IFNβ-1a consisting of 166 amino acids, around 20KDa. It has 5 helixs. There are several &amp;lt;scene name=&#039;56/566503/Important_hydrophobic_residues/2&#039;&amp;gt;hydrophobic residues&amp;lt;/scene&amp;gt;,such as Phe-70, Phe-154, Trp-79, and Trp-143, that are involved in interactions with each other that stabilize the core of the molecule. In addition, residues of the core form several &amp;lt;scene name=&#039;56/566503/H-bonding/3&#039;&amp;gt;hydrogen bonding&amp;lt;/scene&amp;gt; such as between Gln-10 and Gln-94 and between Ser-118 and Thr-58. Additional interactions that appear to stabilize the loop are &amp;lt;scene name=&#039;56/566503/H-bonding/2&#039;&amp;gt;hydrogen bonds&amp;lt;/scene&amp;gt; between Tyr-132 OH and Asp-34 O and between Arg-147 N and Leu-24 O. Cys-31 forms a &amp;lt;scene name=&#039;56/566503/Disulfide_bridge/1&#039;&amp;gt;disulfide bridge&amp;lt;/scene&amp;gt; with Cys-141 of and plays an important role in the stabilization of protein structure.&lt;br /&gt;
Interferon-β-1a tends to aggregate and form &amp;lt;scene name=&#039;56/566503/Interferon_dimer/1&#039;&amp;gt;dimer&amp;lt;/scene&amp;gt;.&lt;br /&gt;
A zinc ion is observed to exist at the &amp;lt;scene name=&#039;56/566503/Interferon_dimer/2&#039;&amp;gt;interface between molecules A and B&amp;lt;/scene&amp;gt;. It is coordinated in a tetrahedral manner by His-121 of molecule A and His-93 and His-97 of molecule B. A water molecule occupies the fourth coordination site. A network of &amp;lt;scene name=&#039;56/566503/H-bonding_in_interferon_dimer/1&#039;&amp;gt;hydrogen bonds&amp;lt;/scene&amp;gt; formed between His-121 and Glu-43 (molecule A) and between His-97 and Gln-94 (molecule B) appears to assist in the stabilization of the zinc-binding site. &lt;br /&gt;
&amp;lt;scene name=&#039;56/566498/Interferon_beta_1a/1&#039;&amp;gt;Interferon beta 1a&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;scene name=&#039;56/566503/Momomer_for_further_work/1&#039;&amp;gt;monomer for current work&amp;lt;/scene&amp;gt; chain A&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;IFNβ-1a biological activity and therapeutic effects&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
IFNβ-1a as well as other family of IFNs has a variety of biological activities, inluding antiviral, antiproliferative, and immune modulatory activities in response to biological and chemical stimuli[2]. &lt;br /&gt;
&lt;br /&gt;
IFNβ-1a is mainly used to treat relapsing forms of multiple sclerosis(MS).&lt;br /&gt;
MS is a life-long disease that affects your nervous system &lt;br /&gt;
by destroying the protective covering (myelin) that surrounds&lt;br /&gt;
your nerve fibers.&lt;br /&gt;
The commercial available drug format is [http://http://www.avonex.com/ Avonex].(Please refer to the drug guide before using it)&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;Mechanism of action for IFNβ-1a&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The IFNβreceptor, signaling cascade and gene regulation&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
The IFNβreceptor is composed of 2 required chains—a signaling&lt;br /&gt;
chain,&amp;lt;scene name=&#039;56/566498/Human_ifnar1/1&#039;&amp;gt;IFNAR1&amp;lt;/scene&amp;gt; , and a binding chain, &amp;lt;scene name=&#039;56/566498/Ifnar2/1&#039;&amp;gt;IFNAR2&amp;lt;/scene&amp;gt;. Both IFNAR1 and&lt;br /&gt;
IFNAR2 are constitutively expressed on the surface of virtually all cells. IFNβcan bind to IFNAR2 alone, but can bind to IFNAR1 only in&lt;br /&gt;
the presence of IFNAR2. The strength of IFNβbinding to its&lt;br /&gt;
receptor is much higher when both subunits are present.&lt;br /&gt;
Knockout experiments indicate that both IFNAR1 and IFNAR2 are&lt;br /&gt;
required for IFNβ activity, but it remains uncertain&lt;br /&gt;
whether there are auxiliary receptors or alternative receptor/&lt;br /&gt;
signaling complexes in some cell types.&lt;br /&gt;
The current view of events leading to IFNβbiological activity is&lt;br /&gt;
as follows: 1) IFN binds to the extracellular domain of&lt;br /&gt;
IFNAR2. 2) IFNAR1 then engages with the IFNβ–IFNAR2 complex,&lt;br /&gt;
forming the high-affinity receptor–ligand complex and allowing&lt;br /&gt;
the intracellular domains of the two receptor chains and&lt;br /&gt;
associated proteins to interact. 3) This interaction, which includes&lt;br /&gt;
JAK1 (associated with IFNAR2) and Tyk2 (associated with IFNAR1),&lt;br /&gt;
results in a cascade of phosphorylation events that leads to&lt;br /&gt;
activation of STATS. 4) Activated STATS form a complex with other&lt;br /&gt;
cytoplasmic proteins, which then translocate into the nucleus to&lt;br /&gt;
bind to Interferon Sensitive Response Elements (ISRE), transcriptional control regions which are upstream of many IFN regulated&lt;br /&gt;
genes. 5) This ISRE binding results in transcriptional regulation&lt;br /&gt;
(both induction and inhibition) of &amp;gt;1000 genes.&lt;br /&gt;
Thus, IFN regulates expression of a myriad of genes. While the&lt;br /&gt;
function of some of these genes is clear (e.g. the antiviral product&lt;br /&gt;
MxA), the specific transcripts mediating therapeutic benefit of&lt;br /&gt;
IFNβin MS are unknown. This is, in part, due to the complexity and&lt;br /&gt;
heterogeneity of MS, but also because IFNβis an agonist that can&lt;br /&gt;
induce the expression not only of ISRE regulated genes, but&lt;br /&gt;
through newly expressed transcription factors, can induce or&lt;br /&gt;
inhibit subsequent waves of gene expression. In addition, some&lt;br /&gt;
IFNβregulated proteins, which include cytokines and chemokines,&lt;br /&gt;
can alter the level or function of particular cell populations. The&lt;br /&gt;
resulting multifaceted biological response is in contrast to&lt;br /&gt;
therapies such as monoclonal antibodies that have a much more&lt;br /&gt;
specific molecular target[2-9].&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;Reference&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
[1] R. Arduini, K. Strauch, L. Rukel etal.Characterization of a soluble ternary complex formed&lt;br /&gt;
between human interferon-b-1a and its receptor chains&#039;&#039;Protein Science&#039;&#039; (1999),&#039;&#039;8&#039;&#039;:1867–1877&lt;br /&gt;
&lt;br /&gt;
[2] T. Taniguchi, A. Takaoka, The interferon-alpha/beta system in&lt;br /&gt;
antiviral responses: a multimodal machinery of gene regulation&lt;br /&gt;
by the IRF family of transcription factors, Curr. Opin. Immunol.&lt;br /&gt;
14 (1) (Feb 2002) 111–116.&lt;br /&gt;
&lt;br /&gt;
[3] K. Kasama, J. Utsumi, E. Matsuo-Ogawa, T. Nagahata, Y. Kagawa,&lt;br /&gt;
S. Yamazaki, et al., Pharmacokinetics and biologic activities of&lt;br /&gt;
human native and asialointerferon-beta s, J. Interferon Cytokine&lt;br /&gt;
Res. 15 (5) (May 1995) 407–415.&lt;br /&gt;
&lt;br /&gt;
[4] L. Runkel, W. Meier, R.B. Pepinsky, M. Karpusas, A. Whitty,&lt;br /&gt;
K. Kimball, et al., Structural and functional differences between&lt;br /&gt;
glycosylated and non-glycosylated forms of human&lt;br /&gt;
interferon-beta (IFN-beta), Pharm. Res. 15 (4) (Apr 1998)&lt;br /&gt;
641–649.&lt;br /&gt;
&lt;br /&gt;
[5] R.M. Arduini, K.L. Strauch, L.A. Runkel, M.M. Carlson, X.&lt;br /&gt;
Hronowski, S.F. Foley, et al., Characterization of a soluble&lt;br /&gt;
ternary complex formed between human interferon-beta-1a&lt;br /&gt;
and its receptor chains, Protein Sci. 8 (9) (Sep 1999)&lt;br /&gt;
1867–1877.&lt;br /&gt;
&lt;br /&gt;
[6] G. Uze, G. Schreiber, J. Piehler, S. Pellegrini, The receptor of the&lt;br /&gt;
type I interferon family, Curr. Top. Microbiol. Immunol. 316&lt;br /&gt;
(2007) 71–95.&lt;br /&gt;
&lt;br /&gt;
[7] C.M. Cleary, R.J. Donnelly, J. Soh, T.M. Mariano, S. Pestka,&lt;br /&gt;
Knockout and reconstitution of a functional human type I&lt;br /&gt;
interferon receptor complex, J. Biol. Chem. 269 (29)&lt;br /&gt;
(Jul 22 1994) 18747–18749.&lt;br /&gt;
&lt;br /&gt;
[8] J. Kumaran, O.R. Colamonici, E.N. Fish, Structure–function study&lt;br /&gt;
of the extracellular domain of the human type I interferon&lt;br /&gt;
receptor (IFNAR)-1 subunit, J. Interferon Cytokine Res. 20 (5)&lt;br /&gt;
(May 2000) 479–485.&lt;br /&gt;
&lt;br /&gt;
[9] J. Ghislain, G. Sussman, S. Goelz, L.E. Ling, E.N. Fish, Configuration&lt;br /&gt;
of the interferon-alpha/beta receptor complex determines the&lt;br /&gt;
context of the biological response, J. Biol. Chem. 270 (37)&lt;br /&gt;
(Sep 15 1995) 21785–21792.&lt;/div&gt;</summary>
		<author><name>Chengfeng Ren</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=User:Chengfeng_Ren/IFN_beta_1a&amp;diff=2107895</id>
		<title>User:Chengfeng Ren/IFN beta 1a</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=User:Chengfeng_Ren/IFN_beta_1a&amp;diff=2107895"/>
		<updated>2014-12-18T02:24:23Z</updated>

		<summary type="html">&lt;p&gt;Chengfeng Ren: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&lt;br /&gt;
&amp;lt;Structure load=&#039;Insert PDB code or filename here&#039; size=&#039;350&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;Insert caption here&#039; scene=&#039;56/566503/Interferon_dimer/2&#039; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;IFN Categories and IFNβ-1a sources&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Interferons&#039;&#039;&#039; (IFNs) are a family of helical cytokines that mediate&lt;br /&gt;
antiviral, antiproliferative, and immune modulatory activities in&lt;br /&gt;
response to biological and chemical stimuli. Two types of IFN are recognized on   &lt;br /&gt;
the basis of their physical and biological properties; type I, which   &lt;br /&gt;
contains the monomeric IFNs-α,-β,-τ, and -ω, and type II, the&lt;br /&gt;
only member of which is the dimeric IFN-γ. Representatives of all&lt;br /&gt;
type I and type II IFNs are found in humans, except for IFN-τ,&lt;br /&gt;
which is found only in ruminant ungulates. There are 12 different human IFNs-α;each one&lt;br /&gt;
comprising a different subtype,although 14 different genes have&lt;br /&gt;
been identified, whereas human IFN-β, IFN-ω, and IFN-γare&lt;br /&gt;
encoded by single genes[1].&lt;br /&gt;
&lt;br /&gt;
Interferon-β has two subtyes, interferon-β-1a and interferon-β-1b. Interferon-β-1a is naturally expressed in numerous cell types in human, including &lt;br /&gt;
fibroblasts, endothelial cells, epithelial cells and various leukocytes, however,Interferon-β-1b is produced in modified E. coli.&lt;br /&gt;
&lt;br /&gt;
Here is a jpg clearly illustrating IFNs categories.&lt;br /&gt;
[[Image:IFN categories.jpg]]&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;Structure info. of IFNβ-1a&#039;&#039;&#039;==&lt;br /&gt;
IFNβ-1a consisting of 166 amino acids, around 20KDa. It has 5 helixs. There are several &amp;lt;scene name=&#039;56/566503/Important_hydrophobic_residues/2&#039;&amp;gt;hydrophobic residues&amp;lt;/scene&amp;gt;,such as Phe-70, Phe-154, Trp-79, and Trp-143, that are involved in interactions with each other that stabilize the core of the molecule. In addition, residues of the core form several &amp;lt;scene name=&#039;56/566503/H-bonding/3&#039;&amp;gt;hydrogen bonding&amp;lt;/scene&amp;gt; such as between Gln-10 and Gln-94 and between Ser-118 and Thr-58. Additional interactions that appear to stabilize the loop are &amp;lt;scene name=&#039;56/566503/H-bonding/2&#039;&amp;gt;hydrogen bonds&amp;lt;/scene&amp;gt; between Tyr-132 OH and Asp-34 O and between Arg-147 N and Leu-24 O. Cys-31 forms a &amp;lt;scene name=&#039;56/566503/Disulfide_bridge/1&#039;&amp;gt;disulfide bridge&amp;lt;/scene&amp;gt; with Cys-141 of and plays an important role in the stabilization of protein structure.&lt;br /&gt;
Interferon-β-1a tends to aggregate and form &amp;lt;scene name=&#039;56/566503/Interferon_dimer/1&#039;&amp;gt;dimer&amp;lt;/scene&amp;gt;.&lt;br /&gt;
A zinc ion is observed to exist at the &amp;lt;scene name=&#039;56/566503/Interferon_dimer/2&#039;&amp;gt;interface between molecules A and B&amp;lt;/scene&amp;gt;. It is coordinated in a tetrahedral manner by His-121 of molecule A and His-93 and His-97 of molecule B. A water molecule occupies the fourth coordination site. A network of &amp;lt;scene name=&#039;56/566503/H-bonding_in_interferon_dimer/1&#039;&amp;gt;hydrogen bonds&amp;lt;/scene&amp;gt; formed between His-121 and Glu-43 (molecule A) and between His-97 and Gln-94 (molecule B) appears to assist in the stabilization of the zinc-binding site. &lt;br /&gt;
&amp;lt;scene name=&#039;56/566498/Interferon_beta_1a/1&#039;&amp;gt;Interferon beta 1a&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;scene name=&#039;56/566503/Momomer_for_further_work/1&#039;&amp;gt;monomer for current work&amp;lt;/scene&amp;gt; chain A&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;IFNβ-1a biological activity and therapeutic effects&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
IFNβ-1a as well as other family of IFNs has a variety of biological activities, inluding antiviral, antiproliferative, and immune modulatory activities in response to biological and chemical stimuli[2]. &lt;br /&gt;
&lt;br /&gt;
IFNβ-1a is mainly used to treat relapsing forms of multiple sclerosis(MS).&lt;br /&gt;
MS is a life-long disease that affects your nervous system &lt;br /&gt;
by destroying the protective covering (myelin) that surrounds&lt;br /&gt;
your nerve fibers.&lt;br /&gt;
The commercial available drug format is [http://http://www.avonex.com/ Avonex].(Please refer to the drug guide before using it)&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;Mechanism of action for IFNβ-1a&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The IFNβreceptor, signaling cascade and gene regulation&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
The IFNβreceptor is composed of 2 required chains—a signaling&lt;br /&gt;
chain,&amp;lt;scene name=&#039;56/566498/Human_ifnar1/1&#039;&amp;gt;IFNAR1&amp;lt;/scene&amp;gt; , and a binding chain, &amp;lt;scene name=&#039;56/566498/Ifnar2/1&#039;&amp;gt;IFNAR2&amp;lt;/scene&amp;gt;. Both IFNAR1 and&lt;br /&gt;
IFNAR2 are constitutively expressed on the surface of virtually all cells. IFNβcan bind to IFNAR2 alone, but can bind to IFNAR1 only in&lt;br /&gt;
the presence of IFNAR2. The strength of IFNβbinding to its&lt;br /&gt;
receptor is much higher when both subunits are present.&lt;br /&gt;
Knockout experiments indicate that both IFNAR1 and IFNAR2 are&lt;br /&gt;
required for IFNβ activity, but it remains uncertain&lt;br /&gt;
whether there are auxiliary receptors or alternative receptor/&lt;br /&gt;
signaling complexes in some cell types.&lt;br /&gt;
The current view of events leading to IFNβbiological activity is&lt;br /&gt;
as follows: 1) IFN binds to the extracellular domain of&lt;br /&gt;
IFNAR2. 2) IFNAR1 then engages with the IFNβ–IFNAR2 complex,&lt;br /&gt;
forming the high-affinity receptor–ligand complex and allowing&lt;br /&gt;
the intracellular domains of the two receptor chains and&lt;br /&gt;
associated proteins to interact. 3) This interaction, which includes&lt;br /&gt;
JAK1 (associated with IFNAR2) and Tyk2 (associated with IFNAR1),&lt;br /&gt;
results in a cascade of phosphorylation events that leads to&lt;br /&gt;
activation of STATS. 4) Activated STATS form a complex with other&lt;br /&gt;
cytoplasmic proteins, which then translocate into the nucleus to&lt;br /&gt;
bind to Interferon Sensitive Response Elements (ISRE), transcriptional control regions which are upstream of many IFN regulated&lt;br /&gt;
genes. 5) This ISRE binding results in transcriptional regulation&lt;br /&gt;
(both induction and inhibition) of &amp;gt;1000 genes.&lt;br /&gt;
Thus, IFN regulates expression of a myriad of genes. While the&lt;br /&gt;
function of some of these genes is clear (e.g. the antiviral product&lt;br /&gt;
MxA), the specific transcripts mediating therapeutic benefit of&lt;br /&gt;
IFNβin MS are unknown. This is, in part, due to the complexity and&lt;br /&gt;
heterogeneity of MS, but also because IFNβis an agonist that can&lt;br /&gt;
induce the expression not only of ISRE regulated genes, but&lt;br /&gt;
through newly expressed transcription factors, can induce or&lt;br /&gt;
inhibit subsequent waves of gene expression. In addition, some&lt;br /&gt;
IFNβregulated proteins, which include cytokines and chemokines,&lt;br /&gt;
can alter the level or function of particular cell populations. The&lt;br /&gt;
resulting multifaceted biological response is in contrast to&lt;br /&gt;
therapies such as monoclonal antibodies that have a much more&lt;br /&gt;
specific molecular target[2-9].&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;Reference&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
[1] R. Arduini, K. Strauch, L. Rukel etal.Characterization of a soluble ternary complex formed&lt;br /&gt;
between human interferon-b-1a and its receptor chains&#039;&#039;Protein Science&#039;&#039; (1999),&#039;&#039;8&#039;&#039;:1867–1877&lt;br /&gt;
&lt;br /&gt;
[2] T. Taniguchi, A. Takaoka, The interferon-alpha/beta system in&lt;br /&gt;
antiviral responses: a multimodal machinery of gene regulation&lt;br /&gt;
by the IRF family of transcription factors, Curr. Opin. Immunol.&lt;br /&gt;
14 (1) (Feb 2002) 111–116.&lt;br /&gt;
&lt;br /&gt;
[3] K. Kasama, J. Utsumi, E. Matsuo-Ogawa, T. Nagahata, Y. Kagawa,&lt;br /&gt;
S. Yamazaki, et al., Pharmacokinetics and biologic activities of&lt;br /&gt;
human native and asialointerferon-beta s, J. Interferon Cytokine&lt;br /&gt;
Res. 15 (5) (May 1995) 407–415.&lt;br /&gt;
&lt;br /&gt;
[4] L. Runkel, W. Meier, R.B. Pepinsky, M. Karpusas, A. Whitty,&lt;br /&gt;
K. Kimball, et al., Structural and functional differences between&lt;br /&gt;
glycosylated and non-glycosylated forms of human&lt;br /&gt;
interferon-beta (IFN-beta), Pharm. Res. 15 (4) (Apr 1998)&lt;br /&gt;
641–649.&lt;br /&gt;
&lt;br /&gt;
[5] R.M. Arduini, K.L. Strauch, L.A. Runkel, M.M. Carlson, X.&lt;br /&gt;
Hronowski, S.F. Foley, et al., Characterization of a soluble&lt;br /&gt;
ternary complex formed between human interferon-beta-1a&lt;br /&gt;
and its receptor chains, Protein Sci. 8 (9) (Sep 1999)&lt;br /&gt;
1867–1877.&lt;br /&gt;
&lt;br /&gt;
[6] G. Uze, G. Schreiber, J. Piehler, S. Pellegrini, The receptor of the&lt;br /&gt;
type I interferon family, Curr. Top. Microbiol. Immunol. 316&lt;br /&gt;
(2007) 71–95.&lt;br /&gt;
&lt;br /&gt;
[7] C.M. Cleary, R.J. Donnelly, J. Soh, T.M. Mariano, S. Pestka,&lt;br /&gt;
Knockout and reconstitution of a functional human type I&lt;br /&gt;
interferon receptor complex, J. Biol. Chem. 269 (29)&lt;br /&gt;
(Jul 22 1994) 18747–18749.&lt;br /&gt;
&lt;br /&gt;
[8] J. Kumaran, O.R. Colamonici, E.N. Fish, Structure–function study&lt;br /&gt;
of the extracellular domain of the human type I interferon&lt;br /&gt;
receptor (IFNAR)-1 subunit, J. Interferon Cytokine Res. 20 (5)&lt;br /&gt;
(May 2000) 479–485.&lt;br /&gt;
&lt;br /&gt;
[9] J. Ghislain, G. Sussman, S. Goelz, L.E. Ling, E.N. Fish, Configuration&lt;br /&gt;
of the interferon-alpha/beta receptor complex determines the&lt;br /&gt;
context of the biological response, J. Biol. Chem. 270 (37)&lt;br /&gt;
(Sep 15 1995) 21785–21792.&lt;/div&gt;</summary>
		<author><name>Chengfeng Ren</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=User:Chengfeng_Ren/IFN_beta_1a&amp;diff=2107894</id>
		<title>User:Chengfeng Ren/IFN beta 1a</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=User:Chengfeng_Ren/IFN_beta_1a&amp;diff=2107894"/>
		<updated>2014-12-18T02:23:52Z</updated>

		<summary type="html">&lt;p&gt;Chengfeng Ren: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;Structure load=&#039;Insert PDB code or filename here&#039; size=&#039;500&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;Mouse interferon β 1a&#039; scene=&#039;56/566498/Interferon_beta_1a/1&#039; /&amp;gt;&lt;br /&gt;
&amp;lt;Structure load=&#039;Insert PDB code or filename here&#039; size=&#039;350&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;Insert caption here&#039; scene=&#039;56/566503/Interferon_dimer/2&#039; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;IFN Categories and IFNβ-1a sources&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Interferons&#039;&#039;&#039; (IFNs) are a family of helical cytokines that mediate&lt;br /&gt;
antiviral, antiproliferative, and immune modulatory activities in&lt;br /&gt;
response to biological and chemical stimuli. Two types of IFN are recognized on   &lt;br /&gt;
the basis of their physical and biological properties; type I, which   &lt;br /&gt;
contains the monomeric IFNs-α,-β,-τ, and -ω, and type II, the&lt;br /&gt;
only member of which is the dimeric IFN-γ. Representatives of all&lt;br /&gt;
type I and type II IFNs are found in humans, except for IFN-τ,&lt;br /&gt;
which is found only in ruminant ungulates. There are 12 different human IFNs-α;each one&lt;br /&gt;
comprising a different subtype,although 14 different genes have&lt;br /&gt;
been identified, whereas human IFN-β, IFN-ω, and IFN-γare&lt;br /&gt;
encoded by single genes[1].&lt;br /&gt;
&lt;br /&gt;
Interferon-β has two subtyes, interferon-β-1a and interferon-β-1b. Interferon-β-1a is naturally expressed in numerous cell types in human, including &lt;br /&gt;
fibroblasts, endothelial cells, epithelial cells and various leukocytes, however,Interferon-β-1b is produced in modified E. coli.&lt;br /&gt;
&lt;br /&gt;
Here is a jpg clearly illustrating IFNs categories.&lt;br /&gt;
[[Image:IFN categories.jpg]]&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;Structure info. of IFNβ-1a&#039;&#039;&#039;==&lt;br /&gt;
IFNβ-1a consisting of 166 amino acids, around 20KDa. It has 5 helixs. There are several &amp;lt;scene name=&#039;56/566503/Important_hydrophobic_residues/2&#039;&amp;gt;hydrophobic residues&amp;lt;/scene&amp;gt;,such as Phe-70, Phe-154, Trp-79, and Trp-143, that are involved in interactions with each other that stabilize the core of the molecule. In addition, residues of the core form several &amp;lt;scene name=&#039;56/566503/H-bonding/3&#039;&amp;gt;hydrogen bonding&amp;lt;/scene&amp;gt; such as between Gln-10 and Gln-94 and between Ser-118 and Thr-58. Additional interactions that appear to stabilize the loop are &amp;lt;scene name=&#039;56/566503/H-bonding/2&#039;&amp;gt;hydrogen bonds&amp;lt;/scene&amp;gt; between Tyr-132 OH and Asp-34 O and between Arg-147 N and Leu-24 O. Cys-31 forms a &amp;lt;scene name=&#039;56/566503/Disulfide_bridge/1&#039;&amp;gt;disulfide bridge&amp;lt;/scene&amp;gt; with Cys-141 of and plays an important role in the stabilization of protein structure.&lt;br /&gt;
Interferon-β-1a tends to aggregate and form &amp;lt;scene name=&#039;56/566503/Interferon_dimer/1&#039;&amp;gt;dimer&amp;lt;/scene&amp;gt;.&lt;br /&gt;
A zinc ion is observed to exist at the &amp;lt;scene name=&#039;56/566503/Interferon_dimer/2&#039;&amp;gt;interface between molecules A and B&amp;lt;/scene&amp;gt;. It is coordinated in a tetrahedral manner by His-121 of molecule A and His-93 and His-97 of molecule B. A water molecule occupies the fourth coordination site. A network of &amp;lt;scene name=&#039;56/566503/H-bonding_in_interferon_dimer/1&#039;&amp;gt;hydrogen bonds&amp;lt;/scene&amp;gt; formed between His-121 and Glu-43 (molecule A) and between His-97 and Gln-94 (molecule B) appears to assist in the stabilization of the zinc-binding site. &lt;br /&gt;
&amp;lt;scene name=&#039;56/566498/Interferon_beta_1a/1&#039;&amp;gt;Interferon beta 1a&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;scene name=&#039;56/566503/Momomer_for_further_work/1&#039;&amp;gt;monomer for current work&amp;lt;/scene&amp;gt; chain A&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;IFNβ-1a biological activity and therapeutic effects&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
IFNβ-1a as well as other family of IFNs has a variety of biological activities, inluding antiviral, antiproliferative, and immune modulatory activities in response to biological and chemical stimuli[2]. &lt;br /&gt;
&lt;br /&gt;
IFNβ-1a is mainly used to treat relapsing forms of multiple sclerosis(MS).&lt;br /&gt;
MS is a life-long disease that affects your nervous system &lt;br /&gt;
by destroying the protective covering (myelin) that surrounds&lt;br /&gt;
your nerve fibers.&lt;br /&gt;
The commercial available drug format is [http://http://www.avonex.com/ Avonex].(Please refer to the drug guide before using it)&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;Mechanism of action for IFNβ-1a&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The IFNβreceptor, signaling cascade and gene regulation&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
The IFNβreceptor is composed of 2 required chains—a signaling&lt;br /&gt;
chain,&amp;lt;scene name=&#039;56/566498/Human_ifnar1/1&#039;&amp;gt;IFNAR1&amp;lt;/scene&amp;gt; , and a binding chain, &amp;lt;scene name=&#039;56/566498/Ifnar2/1&#039;&amp;gt;IFNAR2&amp;lt;/scene&amp;gt;. Both IFNAR1 and&lt;br /&gt;
IFNAR2 are constitutively expressed on the surface of virtually all cells. IFNβcan bind to IFNAR2 alone, but can bind to IFNAR1 only in&lt;br /&gt;
the presence of IFNAR2. The strength of IFNβbinding to its&lt;br /&gt;
receptor is much higher when both subunits are present.&lt;br /&gt;
Knockout experiments indicate that both IFNAR1 and IFNAR2 are&lt;br /&gt;
required for IFNβ activity, but it remains uncertain&lt;br /&gt;
whether there are auxiliary receptors or alternative receptor/&lt;br /&gt;
signaling complexes in some cell types.&lt;br /&gt;
The current view of events leading to IFNβbiological activity is&lt;br /&gt;
as follows: 1) IFN binds to the extracellular domain of&lt;br /&gt;
IFNAR2. 2) IFNAR1 then engages with the IFNβ–IFNAR2 complex,&lt;br /&gt;
forming the high-affinity receptor–ligand complex and allowing&lt;br /&gt;
the intracellular domains of the two receptor chains and&lt;br /&gt;
associated proteins to interact. 3) This interaction, which includes&lt;br /&gt;
JAK1 (associated with IFNAR2) and Tyk2 (associated with IFNAR1),&lt;br /&gt;
results in a cascade of phosphorylation events that leads to&lt;br /&gt;
activation of STATS. 4) Activated STATS form a complex with other&lt;br /&gt;
cytoplasmic proteins, which then translocate into the nucleus to&lt;br /&gt;
bind to Interferon Sensitive Response Elements (ISRE), transcriptional control regions which are upstream of many IFN regulated&lt;br /&gt;
genes. 5) This ISRE binding results in transcriptional regulation&lt;br /&gt;
(both induction and inhibition) of &amp;gt;1000 genes.&lt;br /&gt;
Thus, IFN regulates expression of a myriad of genes. While the&lt;br /&gt;
function of some of these genes is clear (e.g. the antiviral product&lt;br /&gt;
MxA), the specific transcripts mediating therapeutic benefit of&lt;br /&gt;
IFNβin MS are unknown. This is, in part, due to the complexity and&lt;br /&gt;
heterogeneity of MS, but also because IFNβis an agonist that can&lt;br /&gt;
induce the expression not only of ISRE regulated genes, but&lt;br /&gt;
through newly expressed transcription factors, can induce or&lt;br /&gt;
inhibit subsequent waves of gene expression. In addition, some&lt;br /&gt;
IFNβregulated proteins, which include cytokines and chemokines,&lt;br /&gt;
can alter the level or function of particular cell populations. The&lt;br /&gt;
resulting multifaceted biological response is in contrast to&lt;br /&gt;
therapies such as monoclonal antibodies that have a much more&lt;br /&gt;
specific molecular target[2-9].&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;Reference&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
[1] R. Arduini, K. Strauch, L. Rukel etal.Characterization of a soluble ternary complex formed&lt;br /&gt;
between human interferon-b-1a and its receptor chains&#039;&#039;Protein Science&#039;&#039; (1999),&#039;&#039;8&#039;&#039;:1867–1877&lt;br /&gt;
&lt;br /&gt;
[2] T. Taniguchi, A. Takaoka, The interferon-alpha/beta system in&lt;br /&gt;
antiviral responses: a multimodal machinery of gene regulation&lt;br /&gt;
by the IRF family of transcription factors, Curr. Opin. Immunol.&lt;br /&gt;
14 (1) (Feb 2002) 111–116.&lt;br /&gt;
&lt;br /&gt;
[3] K. Kasama, J. Utsumi, E. Matsuo-Ogawa, T. Nagahata, Y. Kagawa,&lt;br /&gt;
S. Yamazaki, et al., Pharmacokinetics and biologic activities of&lt;br /&gt;
human native and asialointerferon-beta s, J. Interferon Cytokine&lt;br /&gt;
Res. 15 (5) (May 1995) 407–415.&lt;br /&gt;
&lt;br /&gt;
[4] L. Runkel, W. Meier, R.B. Pepinsky, M. Karpusas, A. Whitty,&lt;br /&gt;
K. Kimball, et al., Structural and functional differences between&lt;br /&gt;
glycosylated and non-glycosylated forms of human&lt;br /&gt;
interferon-beta (IFN-beta), Pharm. Res. 15 (4) (Apr 1998)&lt;br /&gt;
641–649.&lt;br /&gt;
&lt;br /&gt;
[5] R.M. Arduini, K.L. Strauch, L.A. Runkel, M.M. Carlson, X.&lt;br /&gt;
Hronowski, S.F. Foley, et al., Characterization of a soluble&lt;br /&gt;
ternary complex formed between human interferon-beta-1a&lt;br /&gt;
and its receptor chains, Protein Sci. 8 (9) (Sep 1999)&lt;br /&gt;
1867–1877.&lt;br /&gt;
&lt;br /&gt;
[6] G. Uze, G. Schreiber, J. Piehler, S. Pellegrini, The receptor of the&lt;br /&gt;
type I interferon family, Curr. Top. Microbiol. Immunol. 316&lt;br /&gt;
(2007) 71–95.&lt;br /&gt;
&lt;br /&gt;
[7] C.M. Cleary, R.J. Donnelly, J. Soh, T.M. Mariano, S. Pestka,&lt;br /&gt;
Knockout and reconstitution of a functional human type I&lt;br /&gt;
interferon receptor complex, J. Biol. Chem. 269 (29)&lt;br /&gt;
(Jul 22 1994) 18747–18749.&lt;br /&gt;
&lt;br /&gt;
[8] J. Kumaran, O.R. Colamonici, E.N. Fish, Structure–function study&lt;br /&gt;
of the extracellular domain of the human type I interferon&lt;br /&gt;
receptor (IFNAR)-1 subunit, J. Interferon Cytokine Res. 20 (5)&lt;br /&gt;
(May 2000) 479–485.&lt;br /&gt;
&lt;br /&gt;
[9] J. Ghislain, G. Sussman, S. Goelz, L.E. Ling, E.N. Fish, Configuration&lt;br /&gt;
of the interferon-alpha/beta receptor complex determines the&lt;br /&gt;
context of the biological response, J. Biol. Chem. 270 (37)&lt;br /&gt;
(Sep 15 1995) 21785–21792.&lt;/div&gt;</summary>
		<author><name>Chengfeng Ren</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=CBI_Molecules&amp;diff=2071929</id>
		<title>CBI Molecules</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=CBI_Molecules&amp;diff=2071929"/>
		<updated>2014-12-03T05:26:01Z</updated>

		<summary type="html">&lt;p&gt;Chengfeng Ren: /* Molecules */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;These are molecules under study by members of the [http://www.umass.edu/cbi/ University of Massachusetts Amherst Chemistry-Biology Interface Program].&lt;br /&gt;
Many of the  molecules we study are featured at the [http://www.molecularplayground.org/ Molecular Playground] (see also [[Molecular Playground|Molecular Playground in Proteopedia]]). Follow the links below to read nontechnical descriptions, in Proteopedia, of these molecules.&lt;br /&gt;
&lt;br /&gt;
UMass CBI Members, add your molecules to the list (which is alphabetical by CBI research mentor); follow the instructions below the list.&lt;br /&gt;
&lt;br /&gt;
Fall 2014: CBI Molecules are due 12/3/14 and should be added at the TOP of the list from your lab. Label it as &amp;quot;in progress&amp;quot; until you are finished, and then as &amp;quot;New 2014&amp;quot; or &amp;quot;Revised 2014&amp;quot;. For those editing an existing CBI Molecule, start by making a copy of that entry (leaving the original intact) so that it retains the full author list of all authors that contributed (or include credits and a link to the original page and authors if it does not).&lt;br /&gt;
Follow the instructions at the bottom of this page.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
==Molecules==&lt;br /&gt;
&#039;&#039;&#039;** Designates CBI Molecules Featured on [http://www.umass.edu/cbi/ CBI website]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
[http://chamberslab.com/wp/ Chambers Lab]&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Glutamate Receptor]]&#039;&#039;&#039;,  Amanda Hussey, Steve McCarron, Rosie Combs-Bachmann, Mariel Feliciano&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[http://www.chem.umass.edu/~chenlab/index.HTML Chen Lab]&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/ClyA]]&#039;&#039;&#039;, Bib Yang&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/OmpG]]&#039;&#039;&#039;, Christina Chisholm&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[http://openwetware.org/wiki/Chien Chien Lab]&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Homo-dimeric RcdA]]&#039;&#039;&#039;, Kamal K. Joshi &lt;br /&gt;
: **&#039;&#039;&#039;[[Molecular Playground/Hexameric ClpX]]&#039;&#039;&#039;, Joanne Lau &#039;&#039;&#039;Best CBI Molecule 2011&#039;&#039;&#039;&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/DNA replication initiator DnaA]]&#039;&#039;&#039;, Jing Liu&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Farkas Lab&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Forbes Lab&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/CheR]]&#039;&#039;&#039;,  Miaomin Zhang&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/RBP]]&#039;&#039;&#039;,  Jan Panteli&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/TRAIL]]&#039;&#039;&#039;,  Charley Swofford&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[http://www.biochem.umass.edu/garman/index.html Garman Lab]&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Human Protective Protein Cathepsin A]]&#039;&#039;&#039;, Yadilette Rivera-Colon&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Human PPCA]]&#039;&#039;&#039;, Nilima Kolli&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[http://people.chem.umass.edu/gieraschlab/ Gierasch Lab]&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular_Playground/DnaK]]&#039;&#039;&#039;, Joseph Tilitsky, New 2014&lt;br /&gt;
: &#039;&#039;&#039;[[CRABP I ( Cellular Retinoic Acid Binding Protein )|Molecular Playground/CRABP I]]&#039;&#039;&#039;, Kristine Faye Pobre, Mylene Ferrolino,Mangai Periasamy  &#039;&#039;&#039;Best Overall CBI Molecule 2010&#039;&#039;&#039;&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/CRABP I (Cellular Retinoic Acid Binding Protein)]]&#039;&#039;&#039;, Gustavo Elberto Epalza Sanchez&lt;br /&gt;
: **&#039;&#039;&#039;[[Molecular_Playground/DHFR]]&#039;&#039;&#039;, Karan Hingorani &#039;&#039;&#039;Best CBI Molecule 2012&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[http://people.chem.umass.edu/jhardy/ Hardy Lab]&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Executioner Caspase-7]]&#039;&#039;&#039;, Derek MacPherson, Maureen E. Hill&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Caspase-3 Regulatory Mechanisms]]&#039;&#039;&#039;, Scott Eron, Bay Serrano, Yunlong Zhao&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Caspase-6 and neurodegeneration]]&#039;&#039;&#039;, Kevin Buadlart Dagbay&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Caspase-7 Dynamics]]&#039;&#039;&#039;&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Caspase-9 Regulation]]&#039;&#039;&#039;, Kristen Huber&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Caspase-6 (new)]]&#039;&#039;&#039;, Elih Velazquez&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Influenza A M2 transmembrane domain]]&#039;&#039;&#039;, Samantha Nicholls&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Dengue Virus Protease]]&#039;&#039;&#039;, Muslum Yildiz&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Hebert Lab&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular_Playground/Hsp70-Hsp90]]&#039;&#039;&#039;,  Jill Graham&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular_Playground/ERDj5]]&#039;&#039;&#039;,  Lydia Lamriben&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Saposin C]]&#039;&#039;&#039;, Abla Tannous&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular_Playground/ERMan1]]&#039;&#039;&#039;,  Johan Sunryd&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[http://people.biochem.umass.edu/aheuck/aph.html Heuck Lab]&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular_Playground/Pcr H]]&#039;&#039;&#039;,  Fabian Romano, Carolina Morell-Pérez&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[http://people.chem.umass.edu/mholden/ Holden Lab]&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Protective Antigen]]&#039;&#039;&#039;,  Jing Huang&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[http://www.chem.umass.edu/people/kaltashovlab/ Kaltashov Lab]&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[http://proteopedia.org/wiki/index.php/Chengfeng_Ren Molecular Playground/Inteferon]&#039;&#039;&#039;[Revised], Chengfeng Ren&lt;br /&gt;
: &#039;&#039;&#039; [[Molecular Playground/Transferrin]]&#039;&#039;&#039;, Khaja Muneeruddin, Jake Pawlowski&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Velaglucerase]]&#039;&#039;&#039;, Adriana Kita&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Antithrombin-Heparin]]&#039;&#039;&#039;, Yunlong Zhao&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Knapp lab&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/FIH]]&#039;&#039;&#039;, Vanessa Chaplin, Cornelius Taabazuing, Breanne Holmes, John Hangasky&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Prolyl Hydroxylase Domain (PHD) Enzyme]]&#039;&#039;&#039;, Cristina Martin, Serap Pektas &#039;&#039;&#039;Best CBI Molecule Proteopedia Page 2010&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[http://people.chem.umass.edu/mmaroney/ Maroney Lab]&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/UreE]]&#039;&#039;&#039;, Priyanka Basak, &#039;&#039;&#039;New 2014&#039;&#039;&#039;&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Nickel Superoxide Dismutase]]&#039;&#039;&#039;, Carolyn Carr&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/CsoR and RcnR]]&#039;&#039;&#039;, Heidi Hu, Carolyn Carr, Hsin-Ting (Tiffany )Huang, &#039;&#039;&#039;Revised 2014&#039;&#039;&#039;&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/HypA]]&#039;&#039;&#039;, Heidi Hu&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[http://www.chem.umass.edu/~cmartin/ Martin Lab]&lt;br /&gt;
&lt;br /&gt;
: **&#039;&#039;&#039;[[Molecular Playground/T7 RNAP Conformations]]&#039;&#039;&#039;, Luis E. Ramirez-Tapia &#039;&#039;&#039;Best CBI Molecule 2011&#039;&#039;&#039;&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/T7 RNA Polymerase (7 mer int)]]&#039;&#039;&#039;, Ankit Vahia&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Human mtRNA pol]]&#039;&#039;&#039;, Ketan Mathavan &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[http://www.peytonlab.org/ Peyton Lab]&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/IntegrinBeta1]]&#039;&#039;&#039;, Lauren Jansen, Lauren Barney, Elizabeth Brooks, Alyssa Schwartz ***&#039;&#039;&#039;NEW FALL 2014&#039;&#039;&#039;&#039;***&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/MMP14]]&#039;&#039;&#039;, Lauren Jansen&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/C-Raf]]&#039;&#039;&#039;, Thuy Nguyen&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/FAK]]&#039;&#039;&#039;, Dannielle Ryman&lt;br /&gt;
&lt;br /&gt;
[http://roberts.openwetware.org/ Roberts Lab]&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Taxol]]&#039;&#039;&#039;,  Rohan Patil, Sarah Wilson&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Insulin]]&#039;&#039;&#039;, Whitney Stoppel&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[http://www.umass.edu/rotellogroup/ Rotello Lab]&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Reverse transcriptase|Molecular Playground/Reverse Transcriptase]]&#039;&#039;&#039;, Daniel Moyano-Marino&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Pancreatic Lipase]]&#039;&#039;&#039;,  Rui Tang&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular playground/Chymotrypsin]]&#039;&#039;&#039;,  Brad&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Targeting Peptide]]&#039;&#039;&#039;, David Solfiell&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[http://http://www.umass.edu/schiffman/  Schiffman Lab]&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Streptavidin]]&#039;&#039;&#039;, Katrina Rieger&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[http://www.biochem.umass.edu/faculty/danny-j-schnell Schnell Lab]&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Tic40]]&#039;&#039;&#039;, Mine Canakci&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Tew Lab&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/HIV Tat]]&#039;&#039;&#039;, Brittany deRonde&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Thayumanavan Lab&lt;br /&gt;
: &#039;&#039;&#039;[[Interleukin-1 beta]]&#039;&#039;&#039;, Huan He&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Lysozyme ]]&#039;&#039;&#039;, Daniella Gonzalez&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Beta-galactosidase]]&#039;&#039;&#039;, Judy Ventura&lt;br /&gt;
: &#039;&#039;&#039;[[User:Krishna Reddy Ragupathi|Molecular Playground/Carbonic Anhydrase]]&#039;&#039;&#039;, Krishna Reddy Raghupathi&lt;br /&gt;
: &#039;&#039;&#039;[[User:Rami Rajasekhar Reddy|Molecular Playground/Avidin]]&#039;&#039;&#039;, Rami Rajasekar Reddy&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Biotin binding avidin]]&#039;&#039;&#039;, Diego Amado &lt;br /&gt;
: &#039;&#039;&#039;[[User:Jiaming Zhuang|Molecular Playground/MMP12]]&#039;&#039;&#039;, Jiaming Zhuang&lt;br /&gt;
: &#039;&#039;&#039; [[User:Jing Guo|Molecular Playground/Gluconase]]&#039;&#039;&#039;, Jing Guo&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Glutathione Reductase]]&#039;&#039;&#039;, Reuben Chacko&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Thayumanavan &amp;amp; Vachet Labs&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Trypsin]]&#039;&#039;&#039;, Gladys Murage&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[http://people.chem.umass.edu/thompson/index.html Thompson Lab]&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Bacterial Chemotaxis Complex]]&#039;&#039;&#039;, Elizabeth R. Haglin, Maryam Kashefi&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/CheA]]&#039;&#039;&#039;, Elizabeth R. Haglin&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Bacterial Chemotaxis Receptors]]&#039;&#039;&#039;, Lynmarie K. Thompson, Shiela M. Jones&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Cytoplasmic domain of chemoreceptor of Thermotoga maritima]]&#039;&#039;&#039;,  Xuni Li&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[http://www.chem.umass.edu/~vachet/index.html Vachet Lab]&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;[[Molecular Playground/Human Serum Albumin]]&#039;&#039;&#039;, Mahalia Serrano&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular playground/beta 2 microglobulin]]&#039;&#039;&#039;,  Nick Borotto &#039;&#039;&#039;Best CBI Molecule Jmol scenes 2010&#039;&#039;&#039;&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Myoglobin]]&#039;&#039;&#039;,  Yuping Zhou &lt;br /&gt;
:&#039;&#039;&#039;[[Molecular Playground/ Copper-Zinc Superoxide Dismutase]]&#039;&#039;&#039;, Shaynah Browne&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Ubiquitin salt bridge discussion]]&#039;&#039;&#039;, Zhe Zhang&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Other Molecules of interest&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/PcrA Helicase]]&#039;&#039;&#039;, Luis E Ramirez-Tapia, [http://www.chem.umass.edu/~cmartin/ Martin Lab]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Other Laboratories&lt;br /&gt;
&lt;br /&gt;
:&#039;&#039;&#039;[[Molecular Playground/4&#039;-PHOSPHOPANTETHEINYL TRANSFERASE (Sfp)]]&#039;&#039;&#039;, Jon Amoroso, Gitanjeli Prasad, Lawrence Sheringham Borketey, Schnarr lab&lt;br /&gt;
: &#039;&#039;&#039;[[6-deoxyerythronolide_B_synthase_(DEBS)|Molecular Playground/6-Deoxyerythronolide B Synthase]]&#039;&#039;&#039;, Tsung-Yi Lin, Jon Amoroso, Lawrence Sheringham Borketey, Schnarr lab&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/ACP apo]]&#039;&#039;&#039;, Gitanjeli Prasad,  Schnarr lab&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/cytoplasmic domain of a serine chemotaxis receptor]]&#039;&#039;&#039;,  Meili Yang, Weis lab&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Alginate-Fall2011]]&#039;&#039;&#039;, Joe White, David Griffi, Bhatia Lab&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Poly(ethylene glycol)]]&#039;&#039;&#039;, Erika M. Saffer, Bhatia Lab&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/YKL-40]]&#039;&#039;&#039;, Ralph A. Francescone III, [http://www.bio.umass.edu/mcb/faculty/Shao.html Shao Lab]&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/BLG|Molecular Playground/β-lactoglobulin]]&#039;&#039;&#039;, Daniel Seeman, Dubin Lab&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/ADAM13]]&#039;&#039;&#039;, Genevieve Abbruzzese, Alfandari Lab&lt;br /&gt;
&lt;br /&gt;
==Instructions==&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The goal is for students to work collaboratively to create one excellent CBI Molecule for each CBI research group, to be featured on the CBI website.&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
Fall 2014: Complete steps 1-3 before the CBI Molecule Workshop on 11/19; bring your computer to the CBI Molecule Workshop in ISB 321. You will be able to start work on your CBI Molecule at the workshop. You should plan to stay and finish your molecule after the workshop (or as soon as possible) while the instructions and ideas are fresh in your mind.&lt;br /&gt;
&lt;br /&gt;
A successful CBI Molecule is an interesting, nontechnical description of a molecule related to your group&#039;s research. It should tell an interesting story with few words and many green scenes. Green scenes should be clear and attractive illustrations that tell your story. It&#039;s great if you can end with a brief statement about how it relates to your group&#039;s research goals.&lt;br /&gt;
&lt;br /&gt;
1. If you don&#039;t already have one, request a Proteopedia account and log in. &lt;br /&gt;
&lt;br /&gt;
2. Read through the rest of the instructions, do the tutorials below, and look at any existing CBI Molecules from your research group. Talk with other CBI students in your research group and decide how you will collaborate to make an improved CBI Molecule related to your group&#039;s research. Develop ideas for the scenes that each of you will make.&lt;br /&gt;
&lt;br /&gt;
3. Get started working in Proteopedia. Make yourself a sandbox page: Enter &amp;quot;User:Your Name/Sandbox 1&amp;quot; (omit quotes) in the search box, then follow instructions to edit this page. Practice entering text, inserting a structure window with scrolling text (green 4-square button on the right), and creating a green scene. Explore the HELP links below to learn how to make a green scene. You can look at other Proteopedia pages in edit mode to see how different effects (like colored text) are achieved (but this won&#039;t show you how the scene effects are made). &lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Complete the above steps before the CBI Molecule Workshop.&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
4. When editing an existing CBI Molecule, leave the original intact and make a copy that you will edit so that it retains the full author list of all authors that contributed. You are encouraged to collaborate on the CBI Molecules, but everyone will need to log in as themself and create a green scene to get credit for their work and to appear as authors on the final list. If you are the sole student from your group enrolled in Chalk Talk and have not previously made a CBI Molecule, try to convince another group member who has previously made a CBI Molecule (see  list above) to join us for the workshop so that you can work together.&lt;br /&gt;
&lt;br /&gt;
5. Your final pages should be called &amp;quot;Molecular Playground/your molecule&amp;quot; and should have links on this CBI Molecule page -- put the new ones first on the list from your research group. Label them &amp;quot;in progress&amp;quot; until you are finished, and then &amp;quot;new 2014&amp;quot; or &amp;quot;revised 2014&amp;quot;. Minimize text; tell your story with green scenes!&lt;br /&gt;
&lt;br /&gt;
6. When your CBI Molecule is complete, send Lynmarie an email to nominate a cool scene/clever caption you would like to feature at the Molecular Playground (include a link to your CBI Molecule, name of the green scene, and caption).&lt;br /&gt;
&lt;br /&gt;
==Links to HELP pages==&lt;br /&gt;
Overview at [[Help:Contents ]]&lt;br /&gt;
&lt;br /&gt;
See also [[Help:Getting_Started_in_Proteopedia]] &lt;br /&gt;
&lt;br /&gt;
Videos showing how to use Proteopedia:&lt;br /&gt;
[[Proteopedia:Video_Guide]]&lt;br /&gt;
(Sometimes slow -- if you pause the video and wait awhile it will download and then you can play it without interruptions)&lt;br /&gt;
&lt;br /&gt;
[[Proteopedia:DIY:Scenes|Proteopedia Scenes: Do It Yourself]]&lt;br /&gt;
gives succinct step by step instructions on how to create a molecular scene.&lt;br /&gt;
&lt;br /&gt;
A powerpoint-like set of slides that walks a user through the process of creating a new page and a new molecular scene/green link.&lt;br /&gt;
[http://www.proteopedia.org/wiki/images/1/1b/2009_07_13_Proteopedia_Workshop.pdf Proteopedia Workshop Slides]&lt;br /&gt;
&lt;br /&gt;
[[Proteopedia:Guidelines for Ethical Writing]].&lt;br /&gt;
Please pay attention to the section about images. There are links to examples of images re-used with explicit permission.&lt;br /&gt;
&lt;br /&gt;
For other help resources, click on [[Help:Contents|Help]] in the &#039;&#039;navigation&#039;&#039; box at the upper left of every page in Proteopedia.&lt;/div&gt;</summary>
		<author><name>Chengfeng Ren</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=User:Chengfeng_Ren/IFN_beta_1a&amp;diff=2071928</id>
		<title>User:Chengfeng Ren/IFN beta 1a</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=User:Chengfeng_Ren/IFN_beta_1a&amp;diff=2071928"/>
		<updated>2014-12-03T05:23:55Z</updated>

		<summary type="html">&lt;p&gt;Chengfeng Ren: /* &amp;#039;&amp;#039;&amp;#039;Structure info. of IFNβ-1a&amp;#039;&amp;#039;&amp;#039; */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;Structure load=&#039;Insert PDB code or filename here&#039; size=&#039;500&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;Mouse interferon β 1a&#039; scene=&#039;56/566498/Interferon_beta_1a/1&#039; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;IFN Categories and IFNβ-1a sources&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Interferons&#039;&#039;&#039; (IFNs) are a family of helical cytokines that mediate&lt;br /&gt;
antiviral, antiproliferative, and immune modulatory activities in&lt;br /&gt;
response to biological and chemical stimuli. Two types of IFN are recognized on   &lt;br /&gt;
the basis of their physical and biological properties; type I, which   &lt;br /&gt;
contains the monomeric IFNs-α,-β,-τ, and -ω, and type II, the&lt;br /&gt;
only member of which is the dimeric IFN-γ. Representatives of all&lt;br /&gt;
type I and type II IFNs are found in humans, except for IFN-τ,&lt;br /&gt;
which is found only in ruminant ungulates. There are 12 different human IFNs-α;each one&lt;br /&gt;
comprising a different subtype,although 14 different genes have&lt;br /&gt;
been identified, whereas human IFN-β, IFN-ω, and IFN-γare&lt;br /&gt;
encoded by single genes[1].&lt;br /&gt;
&lt;br /&gt;
Interferon-β has two subtyes, interferon-β-1a and interferon-β-1b. Interferon-β-1a is naturally expressed in numerous cell types in human, including &lt;br /&gt;
fibroblasts, endothelial cells, epithelial cells and various leukocytes, however,Interferon-β-1b is produced in modified E. coli.&lt;br /&gt;
&lt;br /&gt;
Here is a jpg clearly illustrating IFNs categories.&lt;br /&gt;
[[Image:IFN categories.jpg]]&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;Structure info. of IFNβ-1a&#039;&#039;&#039;==&lt;br /&gt;
IFNβ-1a consisting of 166 amino acids, around 20KDa. It has 5 helixs. There are several &amp;lt;scene name=&#039;56/566503/Important_hydrophobic_residues/2&#039;&amp;gt;hydrophobic residues&amp;lt;/scene&amp;gt;,such as Phe-70, Phe-154, Trp-79, and Trp-143, that are involved in interactions with each other that stabilize the core of the molecule. In addition, residues of the core form several &amp;lt;scene name=&#039;56/566503/H-bonding/3&#039;&amp;gt;hydrogen bonding&amp;lt;/scene&amp;gt; such as between Gln-10 and Gln-94 and between Ser-118 and Thr-58. Additional interactions that appear to stabilize the loop are &amp;lt;scene name=&#039;56/566503/H-bonding/2&#039;&amp;gt;hydrogen bonds&amp;lt;/scene&amp;gt; between Tyr-132 OH and Asp-34 O and between Arg-147 N and Leu-24 O. Cys-31 forms a &amp;lt;scene name=&#039;56/566503/Disulfide_bridge/1&#039;&amp;gt;disulfide bridge&amp;lt;/scene&amp;gt; with Cys-141 of and plays an important role in the stabilization of protein structure.&lt;br /&gt;
Interferon-β-1a tends to aggregate and form &amp;lt;scene name=&#039;56/566503/Interferon_dimer/1&#039;&amp;gt;dimer&amp;lt;/scene&amp;gt;.&lt;br /&gt;
A zinc ion is observed to exist at the &amp;lt;scene name=&#039;56/566503/Interferon_dimer/2&#039;&amp;gt;interface between molecules A and B&amp;lt;/scene&amp;gt;. It is coordinated in a tetrahedral manner by His-121 of molecule A and His-93 and His-97 of molecule B. A water molecule occupies the fourth coordination site. A network of &amp;lt;scene name=&#039;56/566503/H-bonding_in_interferon_dimer/1&#039;&amp;gt;hydrogen bonds&amp;lt;/scene&amp;gt; formed between His-121 and Glu-43 (molecule A) and between His-97 and Gln-94 (molecule B) appears to assist in the stabilization of the zinc-binding site. &lt;br /&gt;
&amp;lt;scene name=&#039;56/566498/Interferon_beta_1a/1&#039;&amp;gt;Interferon beta 1a&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;scene name=&#039;56/566503/Momomer_for_further_work/1&#039;&amp;gt;monomer for current work&amp;lt;/scene&amp;gt; chain A&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;IFNβ-1a biological activity and therapeutic effects&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
IFNβ-1a as well as other family of IFNs has a variety of biological activities, inluding antiviral, antiproliferative, and immune modulatory activities in response to biological and chemical stimuli[2]. &lt;br /&gt;
&lt;br /&gt;
IFNβ-1a is mainly used to treat relapsing forms of multiple sclerosis(MS).&lt;br /&gt;
MS is a life-long disease that affects your nervous system &lt;br /&gt;
by destroying the protective covering (myelin) that surrounds&lt;br /&gt;
your nerve fibers.&lt;br /&gt;
The commercial available drug format is [http://http://www.avonex.com/ Avonex].(Please refer to the drug guide before using it)&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;Mechanism of action for IFNβ-1a&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The IFNβreceptor, signaling cascade and gene regulation&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
The IFNβreceptor is composed of 2 required chains—a signaling&lt;br /&gt;
chain,&amp;lt;scene name=&#039;56/566498/Human_ifnar1/1&#039;&amp;gt;IFNAR1&amp;lt;/scene&amp;gt; , and a binding chain, &amp;lt;scene name=&#039;56/566498/Ifnar2/1&#039;&amp;gt;IFNAR2&amp;lt;/scene&amp;gt;. Both IFNAR1 and&lt;br /&gt;
IFNAR2 are constitutively expressed on the surface of virtually all cells. IFNβcan bind to IFNAR2 alone, but can bind to IFNAR1 only in&lt;br /&gt;
the presence of IFNAR2. The strength of IFNβbinding to its&lt;br /&gt;
receptor is much higher when both subunits are present.&lt;br /&gt;
Knockout experiments indicate that both IFNAR1 and IFNAR2 are&lt;br /&gt;
required for IFNβ activity, but it remains uncertain&lt;br /&gt;
whether there are auxiliary receptors or alternative receptor/&lt;br /&gt;
signaling complexes in some cell types.&lt;br /&gt;
The current view of events leading to IFNβbiological activity is&lt;br /&gt;
as follows: 1) IFN binds to the extracellular domain of&lt;br /&gt;
IFNAR2. 2) IFNAR1 then engages with the IFNβ–IFNAR2 complex,&lt;br /&gt;
forming the high-affinity receptor–ligand complex and allowing&lt;br /&gt;
the intracellular domains of the two receptor chains and&lt;br /&gt;
associated proteins to interact. 3) This interaction, which includes&lt;br /&gt;
JAK1 (associated with IFNAR2) and Tyk2 (associated with IFNAR1),&lt;br /&gt;
results in a cascade of phosphorylation events that leads to&lt;br /&gt;
activation of STATS. 4) Activated STATS form a complex with other&lt;br /&gt;
cytoplasmic proteins, which then translocate into the nucleus to&lt;br /&gt;
bind to Interferon Sensitive Response Elements (ISRE), transcriptional control regions which are upstream of many IFN regulated&lt;br /&gt;
genes. 5) This ISRE binding results in transcriptional regulation&lt;br /&gt;
(both induction and inhibition) of &amp;gt;1000 genes.&lt;br /&gt;
Thus, IFN regulates expression of a myriad of genes. While the&lt;br /&gt;
function of some of these genes is clear (e.g. the antiviral product&lt;br /&gt;
MxA), the specific transcripts mediating therapeutic benefit of&lt;br /&gt;
IFNβin MS are unknown. This is, in part, due to the complexity and&lt;br /&gt;
heterogeneity of MS, but also because IFNβis an agonist that can&lt;br /&gt;
induce the expression not only of ISRE regulated genes, but&lt;br /&gt;
through newly expressed transcription factors, can induce or&lt;br /&gt;
inhibit subsequent waves of gene expression. In addition, some&lt;br /&gt;
IFNβregulated proteins, which include cytokines and chemokines,&lt;br /&gt;
can alter the level or function of particular cell populations. The&lt;br /&gt;
resulting multifaceted biological response is in contrast to&lt;br /&gt;
therapies such as monoclonal antibodies that have a much more&lt;br /&gt;
specific molecular target[2-9].&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;Reference&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
[1] R. Arduini, K. Strauch, L. Rukel etal.Characterization of a soluble ternary complex formed&lt;br /&gt;
between human interferon-b-1a and its receptor chains&#039;&#039;Protein Science&#039;&#039; (1999),&#039;&#039;8&#039;&#039;:1867–1877&lt;br /&gt;
&lt;br /&gt;
[2] T. Taniguchi, A. Takaoka, The interferon-alpha/beta system in&lt;br /&gt;
antiviral responses: a multimodal machinery of gene regulation&lt;br /&gt;
by the IRF family of transcription factors, Curr. Opin. Immunol.&lt;br /&gt;
14 (1) (Feb 2002) 111–116.&lt;br /&gt;
&lt;br /&gt;
[3] K. Kasama, J. Utsumi, E. Matsuo-Ogawa, T. Nagahata, Y. Kagawa,&lt;br /&gt;
S. Yamazaki, et al., Pharmacokinetics and biologic activities of&lt;br /&gt;
human native and asialointerferon-beta s, J. Interferon Cytokine&lt;br /&gt;
Res. 15 (5) (May 1995) 407–415.&lt;br /&gt;
&lt;br /&gt;
[4] L. Runkel, W. Meier, R.B. Pepinsky, M. Karpusas, A. Whitty,&lt;br /&gt;
K. Kimball, et al., Structural and functional differences between&lt;br /&gt;
glycosylated and non-glycosylated forms of human&lt;br /&gt;
interferon-beta (IFN-beta), Pharm. Res. 15 (4) (Apr 1998)&lt;br /&gt;
641–649.&lt;br /&gt;
&lt;br /&gt;
[5] R.M. Arduini, K.L. Strauch, L.A. Runkel, M.M. Carlson, X.&lt;br /&gt;
Hronowski, S.F. Foley, et al., Characterization of a soluble&lt;br /&gt;
ternary complex formed between human interferon-beta-1a&lt;br /&gt;
and its receptor chains, Protein Sci. 8 (9) (Sep 1999)&lt;br /&gt;
1867–1877.&lt;br /&gt;
&lt;br /&gt;
[6] G. Uze, G. Schreiber, J. Piehler, S. Pellegrini, The receptor of the&lt;br /&gt;
type I interferon family, Curr. Top. Microbiol. Immunol. 316&lt;br /&gt;
(2007) 71–95.&lt;br /&gt;
&lt;br /&gt;
[7] C.M. Cleary, R.J. Donnelly, J. Soh, T.M. Mariano, S. Pestka,&lt;br /&gt;
Knockout and reconstitution of a functional human type I&lt;br /&gt;
interferon receptor complex, J. Biol. Chem. 269 (29)&lt;br /&gt;
(Jul 22 1994) 18747–18749.&lt;br /&gt;
&lt;br /&gt;
[8] J. Kumaran, O.R. Colamonici, E.N. Fish, Structure–function study&lt;br /&gt;
of the extracellular domain of the human type I interferon&lt;br /&gt;
receptor (IFNAR)-1 subunit, J. Interferon Cytokine Res. 20 (5)&lt;br /&gt;
(May 2000) 479–485.&lt;br /&gt;
&lt;br /&gt;
[9] J. Ghislain, G. Sussman, S. Goelz, L.E. Ling, E.N. Fish, Configuration&lt;br /&gt;
of the interferon-alpha/beta receptor complex determines the&lt;br /&gt;
context of the biological response, J. Biol. Chem. 270 (37)&lt;br /&gt;
(Sep 15 1995) 21785–21792.&lt;/div&gt;</summary>
		<author><name>Chengfeng Ren</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=User:Chengfeng_Ren/IFN_beta_1a&amp;diff=2071927</id>
		<title>User:Chengfeng Ren/IFN beta 1a</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=User:Chengfeng_Ren/IFN_beta_1a&amp;diff=2071927"/>
		<updated>2014-12-03T05:19:55Z</updated>

		<summary type="html">&lt;p&gt;Chengfeng Ren: /* &amp;#039;&amp;#039;&amp;#039;Structure info. of IFNβ-1a&amp;#039;&amp;#039;&amp;#039; */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;Structure load=&#039;Insert PDB code or filename here&#039; size=&#039;500&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;Mouse interferon β 1a&#039; scene=&#039;56/566498/Interferon_beta_1a/1&#039; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;IFN Categories and IFNβ-1a sources&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Interferons&#039;&#039;&#039; (IFNs) are a family of helical cytokines that mediate&lt;br /&gt;
antiviral, antiproliferative, and immune modulatory activities in&lt;br /&gt;
response to biological and chemical stimuli. Two types of IFN are recognized on   &lt;br /&gt;
the basis of their physical and biological properties; type I, which   &lt;br /&gt;
contains the monomeric IFNs-α,-β,-τ, and -ω, and type II, the&lt;br /&gt;
only member of which is the dimeric IFN-γ. Representatives of all&lt;br /&gt;
type I and type II IFNs are found in humans, except for IFN-τ,&lt;br /&gt;
which is found only in ruminant ungulates. There are 12 different human IFNs-α;each one&lt;br /&gt;
comprising a different subtype,although 14 different genes have&lt;br /&gt;
been identified, whereas human IFN-β, IFN-ω, and IFN-γare&lt;br /&gt;
encoded by single genes[1].&lt;br /&gt;
&lt;br /&gt;
Interferon-β has two subtyes, interferon-β-1a and interferon-β-1b. Interferon-β-1a is naturally expressed in numerous cell types in human, including &lt;br /&gt;
fibroblasts, endothelial cells, epithelial cells and various leukocytes, however,Interferon-β-1b is produced in modified E. coli.&lt;br /&gt;
&lt;br /&gt;
Here is a jpg clearly illustrating IFNs categories.&lt;br /&gt;
[[Image:IFN categories.jpg]]&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;Structure info. of IFNβ-1a&#039;&#039;&#039;==&lt;br /&gt;
IFNβ-1a consisting of 166 amino acids, around 20KDa. It has 5 helixs. There are several &amp;lt;scene name=&#039;56/566503/Important_hydrophobic_residues/2&#039;&amp;gt;hydrophobic residues&amp;lt;/scene&amp;gt;,such as Phe-70, Phe-154, Trp-79, and Trp-143, that are involved in interactions with each other that stabilize the core of the molecule. In addition, residues of the core form several &amp;lt;scene name=&#039;56/566503/H-bonding/3&#039;&amp;gt;hydrogen bonding&amp;lt;/scene&amp;gt; such as between Gln-10 and Gln-94 and between Ser-118 and Thr-58. Additional interactions that appear to stabilize the loop are &amp;lt;scene name=&#039;56/566503/H-bonding/2&#039;&amp;gt;hydrogen bonds&amp;lt;/scene&amp;gt; between Tyr-132 OH and Asp-34 O and between Arg-147 N and Leu-24 O. Cys-31 forms a &amp;lt;scene name=&#039;56/566503/Disulfide_bridge/1&#039;&amp;gt;disulfide bridge&amp;lt;/scene&amp;gt; with Cys-141 of and plays an important role in the stabilization of protein structure.&lt;br /&gt;
Interferon-β-1a tends to aggregate and form dimers.&amp;lt;scene name=&#039;56/566503/Interferon_dimer/1&#039;&amp;gt;Interferon dimer&amp;lt;/scene&amp;gt;&lt;br /&gt;
A zinc ion is observed to exist at the &amp;lt;scene name=&#039;56/566503/Interferon_dimer/2&#039;&amp;gt;interface between molecules A and B&amp;lt;/scene&amp;gt;. It is coordinated in a tetrahedral manner by His-121 of molecule A and His-93 and His-97 of molecule B. A water molecule occupies the fourth coordination site. A network of &amp;lt;scene name=&#039;56/566503/H-bonding_in_interferon_dimer/1&#039;&amp;gt;hydrogen bonds&amp;lt;/scene&amp;gt; formed between His-121 and Glu-43 (molecule A) and between His-97 and Gln-94 (molecule B) appears to assist in the stabilization of the zinc-binding site. &lt;br /&gt;
&amp;lt;scene name=&#039;56/566498/Interferon_beta_1a/1&#039;&amp;gt;Interferon beta 1a&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;scene name=&#039;56/566503/Momomer_for_further_work/1&#039;&amp;gt;monomer for current work&amp;lt;/scene&amp;gt; chain A&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;IFNβ-1a biological activity and therapeutic effects&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
IFNβ-1a as well as other family of IFNs has a variety of biological activities, inluding antiviral, antiproliferative, and immune modulatory activities in response to biological and chemical stimuli[2]. &lt;br /&gt;
&lt;br /&gt;
IFNβ-1a is mainly used to treat relapsing forms of multiple sclerosis(MS).&lt;br /&gt;
MS is a life-long disease that affects your nervous system &lt;br /&gt;
by destroying the protective covering (myelin) that surrounds&lt;br /&gt;
your nerve fibers.&lt;br /&gt;
The commercial available drug format is [http://http://www.avonex.com/ Avonex].(Please refer to the drug guide before using it)&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;Mechanism of action for IFNβ-1a&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The IFNβreceptor, signaling cascade and gene regulation&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
The IFNβreceptor is composed of 2 required chains—a signaling&lt;br /&gt;
chain,&amp;lt;scene name=&#039;56/566498/Human_ifnar1/1&#039;&amp;gt;IFNAR1&amp;lt;/scene&amp;gt; , and a binding chain, &amp;lt;scene name=&#039;56/566498/Ifnar2/1&#039;&amp;gt;IFNAR2&amp;lt;/scene&amp;gt;. Both IFNAR1 and&lt;br /&gt;
IFNAR2 are constitutively expressed on the surface of virtually all cells. IFNβcan bind to IFNAR2 alone, but can bind to IFNAR1 only in&lt;br /&gt;
the presence of IFNAR2. The strength of IFNβbinding to its&lt;br /&gt;
receptor is much higher when both subunits are present.&lt;br /&gt;
Knockout experiments indicate that both IFNAR1 and IFNAR2 are&lt;br /&gt;
required for IFNβ activity, but it remains uncertain&lt;br /&gt;
whether there are auxiliary receptors or alternative receptor/&lt;br /&gt;
signaling complexes in some cell types.&lt;br /&gt;
The current view of events leading to IFNβbiological activity is&lt;br /&gt;
as follows: 1) IFN binds to the extracellular domain of&lt;br /&gt;
IFNAR2. 2) IFNAR1 then engages with the IFNβ–IFNAR2 complex,&lt;br /&gt;
forming the high-affinity receptor–ligand complex and allowing&lt;br /&gt;
the intracellular domains of the two receptor chains and&lt;br /&gt;
associated proteins to interact. 3) This interaction, which includes&lt;br /&gt;
JAK1 (associated with IFNAR2) and Tyk2 (associated with IFNAR1),&lt;br /&gt;
results in a cascade of phosphorylation events that leads to&lt;br /&gt;
activation of STATS. 4) Activated STATS form a complex with other&lt;br /&gt;
cytoplasmic proteins, which then translocate into the nucleus to&lt;br /&gt;
bind to Interferon Sensitive Response Elements (ISRE), transcriptional control regions which are upstream of many IFN regulated&lt;br /&gt;
genes. 5) This ISRE binding results in transcriptional regulation&lt;br /&gt;
(both induction and inhibition) of &amp;gt;1000 genes.&lt;br /&gt;
Thus, IFN regulates expression of a myriad of genes. While the&lt;br /&gt;
function of some of these genes is clear (e.g. the antiviral product&lt;br /&gt;
MxA), the specific transcripts mediating therapeutic benefit of&lt;br /&gt;
IFNβin MS are unknown. This is, in part, due to the complexity and&lt;br /&gt;
heterogeneity of MS, but also because IFNβis an agonist that can&lt;br /&gt;
induce the expression not only of ISRE regulated genes, but&lt;br /&gt;
through newly expressed transcription factors, can induce or&lt;br /&gt;
inhibit subsequent waves of gene expression. In addition, some&lt;br /&gt;
IFNβregulated proteins, which include cytokines and chemokines,&lt;br /&gt;
can alter the level or function of particular cell populations. The&lt;br /&gt;
resulting multifaceted biological response is in contrast to&lt;br /&gt;
therapies such as monoclonal antibodies that have a much more&lt;br /&gt;
specific molecular target[2-9].&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;Reference&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
[1] R. Arduini, K. Strauch, L. Rukel etal.Characterization of a soluble ternary complex formed&lt;br /&gt;
between human interferon-b-1a and its receptor chains&#039;&#039;Protein Science&#039;&#039; (1999),&#039;&#039;8&#039;&#039;:1867–1877&lt;br /&gt;
&lt;br /&gt;
[2] T. Taniguchi, A. Takaoka, The interferon-alpha/beta system in&lt;br /&gt;
antiviral responses: a multimodal machinery of gene regulation&lt;br /&gt;
by the IRF family of transcription factors, Curr. Opin. Immunol.&lt;br /&gt;
14 (1) (Feb 2002) 111–116.&lt;br /&gt;
&lt;br /&gt;
[3] K. Kasama, J. Utsumi, E. Matsuo-Ogawa, T. Nagahata, Y. Kagawa,&lt;br /&gt;
S. Yamazaki, et al., Pharmacokinetics and biologic activities of&lt;br /&gt;
human native and asialointerferon-beta s, J. Interferon Cytokine&lt;br /&gt;
Res. 15 (5) (May 1995) 407–415.&lt;br /&gt;
&lt;br /&gt;
[4] L. Runkel, W. Meier, R.B. Pepinsky, M. Karpusas, A. Whitty,&lt;br /&gt;
K. Kimball, et al., Structural and functional differences between&lt;br /&gt;
glycosylated and non-glycosylated forms of human&lt;br /&gt;
interferon-beta (IFN-beta), Pharm. Res. 15 (4) (Apr 1998)&lt;br /&gt;
641–649.&lt;br /&gt;
&lt;br /&gt;
[5] R.M. Arduini, K.L. Strauch, L.A. Runkel, M.M. Carlson, X.&lt;br /&gt;
Hronowski, S.F. Foley, et al., Characterization of a soluble&lt;br /&gt;
ternary complex formed between human interferon-beta-1a&lt;br /&gt;
and its receptor chains, Protein Sci. 8 (9) (Sep 1999)&lt;br /&gt;
1867–1877.&lt;br /&gt;
&lt;br /&gt;
[6] G. Uze, G. Schreiber, J. Piehler, S. Pellegrini, The receptor of the&lt;br /&gt;
type I interferon family, Curr. Top. Microbiol. Immunol. 316&lt;br /&gt;
(2007) 71–95.&lt;br /&gt;
&lt;br /&gt;
[7] C.M. Cleary, R.J. Donnelly, J. Soh, T.M. Mariano, S. Pestka,&lt;br /&gt;
Knockout and reconstitution of a functional human type I&lt;br /&gt;
interferon receptor complex, J. Biol. Chem. 269 (29)&lt;br /&gt;
(Jul 22 1994) 18747–18749.&lt;br /&gt;
&lt;br /&gt;
[8] J. Kumaran, O.R. Colamonici, E.N. Fish, Structure–function study&lt;br /&gt;
of the extracellular domain of the human type I interferon&lt;br /&gt;
receptor (IFNAR)-1 subunit, J. Interferon Cytokine Res. 20 (5)&lt;br /&gt;
(May 2000) 479–485.&lt;br /&gt;
&lt;br /&gt;
[9] J. Ghislain, G. Sussman, S. Goelz, L.E. Ling, E.N. Fish, Configuration&lt;br /&gt;
of the interferon-alpha/beta receptor complex determines the&lt;br /&gt;
context of the biological response, J. Biol. Chem. 270 (37)&lt;br /&gt;
(Sep 15 1995) 21785–21792.&lt;/div&gt;</summary>
		<author><name>Chengfeng Ren</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=User:Chengfeng_Ren/IFN_beta_1a&amp;diff=2071926</id>
		<title>User:Chengfeng Ren/IFN beta 1a</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=User:Chengfeng_Ren/IFN_beta_1a&amp;diff=2071926"/>
		<updated>2014-12-03T05:13:42Z</updated>

		<summary type="html">&lt;p&gt;Chengfeng Ren: /* &amp;#039;&amp;#039;&amp;#039;Structure info. of IFNβ-1a&amp;#039;&amp;#039;&amp;#039; */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;Structure load=&#039;Insert PDB code or filename here&#039; size=&#039;500&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;Mouse interferon β 1a&#039; scene=&#039;56/566498/Interferon_beta_1a/1&#039; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;IFN Categories and IFNβ-1a sources&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Interferons&#039;&#039;&#039; (IFNs) are a family of helical cytokines that mediate&lt;br /&gt;
antiviral, antiproliferative, and immune modulatory activities in&lt;br /&gt;
response to biological and chemical stimuli. Two types of IFN are recognized on   &lt;br /&gt;
the basis of their physical and biological properties; type I, which   &lt;br /&gt;
contains the monomeric IFNs-α,-β,-τ, and -ω, and type II, the&lt;br /&gt;
only member of which is the dimeric IFN-γ. Representatives of all&lt;br /&gt;
type I and type II IFNs are found in humans, except for IFN-τ,&lt;br /&gt;
which is found only in ruminant ungulates. There are 12 different human IFNs-α;each one&lt;br /&gt;
comprising a different subtype,although 14 different genes have&lt;br /&gt;
been identified, whereas human IFN-β, IFN-ω, and IFN-γare&lt;br /&gt;
encoded by single genes[1].&lt;br /&gt;
&lt;br /&gt;
Interferon-β has two subtyes, interferon-β-1a and interferon-β-1b. Interferon-β-1a is naturally expressed in numerous cell types in human, including &lt;br /&gt;
fibroblasts, endothelial cells, epithelial cells and various leukocytes, however,Interferon-β-1b is produced in modified E. coli.&lt;br /&gt;
&lt;br /&gt;
Here is a jpg clearly illustrating IFNs categories.&lt;br /&gt;
[[Image:IFN categories.jpg]]&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;Structure info. of IFNβ-1a&#039;&#039;&#039;==&lt;br /&gt;
IFNβ-1a consisting of 166 amino acids, around 20KDa. It has 5 helixs. There are several &amp;lt;scene name=&#039;56/566503/Important_hydrophobic_residues/2&#039;&amp;gt;hydrophobic residues&amp;lt;/scene&amp;gt;,such as Phe-70, Phe-154, Trp-79, and Trp-143, that are involved in interactions with each other that stabilize the core of the molecule. In addition, residues of the core form several &amp;lt;scene name=&#039;56/566503/H-bonding/3&#039;&amp;gt;hydrogen bonding&amp;lt;/scene&amp;gt; such as between Gln-10 and Gln-94 and between Ser-118 and Thr-58. Additional interactions that appear to stabilize the loop are &amp;lt;scene name=&#039;56/566503/H-bonding/2&#039;&amp;gt;hydrogen bonds&amp;lt;/scene&amp;gt; between Tyr-132 OH and Asp-34 O and between Arg-147 N and Leu-24 O. Cys-31 forms a &amp;lt;scene name=&#039;56/566503/Disulfide_bridge/1&#039;&amp;gt;disulfide bridge&amp;lt;/scene&amp;gt; with Cys-141 of and plays an important role in the stabilization of protein structure.&lt;br /&gt;
Interferon-β-1a tends to aggregate and form dimers.&amp;lt;scene name=&#039;56/566503/Interferon_dimer/1&#039;&amp;gt;Interferon dimer&amp;lt;/scene&amp;gt;&lt;br /&gt;
A zinc ion is observed to exist at the &amp;lt;scene name=&#039;56/566503/Interferon_dimer/2&#039;&amp;gt;interface between molecules A and B&amp;lt;/scene&amp;gt;. It is coordinated in a tetrahedral manner by His-121 of molecule A and His-93 and His-97 of molecule B. A water molecule occupies the fourth coordination site. A network of hydrogen bonds formed between His-121 and Glu-43 (molecule A) and between His-97 and Gln-94 (molecule B) appears to assist in the stabilization of the zinc-binding site. &lt;br /&gt;
&amp;lt;scene name=&#039;56/566498/Interferon_beta_1a/1&#039;&amp;gt;Interferon beta 1a&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;scene name=&#039;56/566503/Momomer_for_further_work/1&#039;&amp;gt;monomer for current work&amp;lt;/scene&amp;gt; chain A&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;IFNβ-1a biological activity and therapeutic effects&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
IFNβ-1a as well as other family of IFNs has a variety of biological activities, inluding antiviral, antiproliferative, and immune modulatory activities in response to biological and chemical stimuli[2]. &lt;br /&gt;
&lt;br /&gt;
IFNβ-1a is mainly used to treat relapsing forms of multiple sclerosis(MS).&lt;br /&gt;
MS is a life-long disease that affects your nervous system &lt;br /&gt;
by destroying the protective covering (myelin) that surrounds&lt;br /&gt;
your nerve fibers.&lt;br /&gt;
The commercial available drug format is [http://http://www.avonex.com/ Avonex].(Please refer to the drug guide before using it)&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;Mechanism of action for IFNβ-1a&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The IFNβreceptor, signaling cascade and gene regulation&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
The IFNβreceptor is composed of 2 required chains—a signaling&lt;br /&gt;
chain,&amp;lt;scene name=&#039;56/566498/Human_ifnar1/1&#039;&amp;gt;IFNAR1&amp;lt;/scene&amp;gt; , and a binding chain, &amp;lt;scene name=&#039;56/566498/Ifnar2/1&#039;&amp;gt;IFNAR2&amp;lt;/scene&amp;gt;. Both IFNAR1 and&lt;br /&gt;
IFNAR2 are constitutively expressed on the surface of virtually all cells. IFNβcan bind to IFNAR2 alone, but can bind to IFNAR1 only in&lt;br /&gt;
the presence of IFNAR2. The strength of IFNβbinding to its&lt;br /&gt;
receptor is much higher when both subunits are present.&lt;br /&gt;
Knockout experiments indicate that both IFNAR1 and IFNAR2 are&lt;br /&gt;
required for IFNβ activity, but it remains uncertain&lt;br /&gt;
whether there are auxiliary receptors or alternative receptor/&lt;br /&gt;
signaling complexes in some cell types.&lt;br /&gt;
The current view of events leading to IFNβbiological activity is&lt;br /&gt;
as follows: 1) IFN binds to the extracellular domain of&lt;br /&gt;
IFNAR2. 2) IFNAR1 then engages with the IFNβ–IFNAR2 complex,&lt;br /&gt;
forming the high-affinity receptor–ligand complex and allowing&lt;br /&gt;
the intracellular domains of the two receptor chains and&lt;br /&gt;
associated proteins to interact. 3) This interaction, which includes&lt;br /&gt;
JAK1 (associated with IFNAR2) and Tyk2 (associated with IFNAR1),&lt;br /&gt;
results in a cascade of phosphorylation events that leads to&lt;br /&gt;
activation of STATS. 4) Activated STATS form a complex with other&lt;br /&gt;
cytoplasmic proteins, which then translocate into the nucleus to&lt;br /&gt;
bind to Interferon Sensitive Response Elements (ISRE), transcriptional control regions which are upstream of many IFN regulated&lt;br /&gt;
genes. 5) This ISRE binding results in transcriptional regulation&lt;br /&gt;
(both induction and inhibition) of &amp;gt;1000 genes.&lt;br /&gt;
Thus, IFN regulates expression of a myriad of genes. While the&lt;br /&gt;
function of some of these genes is clear (e.g. the antiviral product&lt;br /&gt;
MxA), the specific transcripts mediating therapeutic benefit of&lt;br /&gt;
IFNβin MS are unknown. This is, in part, due to the complexity and&lt;br /&gt;
heterogeneity of MS, but also because IFNβis an agonist that can&lt;br /&gt;
induce the expression not only of ISRE regulated genes, but&lt;br /&gt;
through newly expressed transcription factors, can induce or&lt;br /&gt;
inhibit subsequent waves of gene expression. In addition, some&lt;br /&gt;
IFNβregulated proteins, which include cytokines and chemokines,&lt;br /&gt;
can alter the level or function of particular cell populations. The&lt;br /&gt;
resulting multifaceted biological response is in contrast to&lt;br /&gt;
therapies such as monoclonal antibodies that have a much more&lt;br /&gt;
specific molecular target[2-9].&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;Reference&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
[1] R. Arduini, K. Strauch, L. Rukel etal.Characterization of a soluble ternary complex formed&lt;br /&gt;
between human interferon-b-1a and its receptor chains&#039;&#039;Protein Science&#039;&#039; (1999),&#039;&#039;8&#039;&#039;:1867–1877&lt;br /&gt;
&lt;br /&gt;
[2] T. Taniguchi, A. Takaoka, The interferon-alpha/beta system in&lt;br /&gt;
antiviral responses: a multimodal machinery of gene regulation&lt;br /&gt;
by the IRF family of transcription factors, Curr. Opin. Immunol.&lt;br /&gt;
14 (1) (Feb 2002) 111–116.&lt;br /&gt;
&lt;br /&gt;
[3] K. Kasama, J. Utsumi, E. Matsuo-Ogawa, T. Nagahata, Y. Kagawa,&lt;br /&gt;
S. Yamazaki, et al., Pharmacokinetics and biologic activities of&lt;br /&gt;
human native and asialointerferon-beta s, J. Interferon Cytokine&lt;br /&gt;
Res. 15 (5) (May 1995) 407–415.&lt;br /&gt;
&lt;br /&gt;
[4] L. Runkel, W. Meier, R.B. Pepinsky, M. Karpusas, A. Whitty,&lt;br /&gt;
K. Kimball, et al., Structural and functional differences between&lt;br /&gt;
glycosylated and non-glycosylated forms of human&lt;br /&gt;
interferon-beta (IFN-beta), Pharm. Res. 15 (4) (Apr 1998)&lt;br /&gt;
641–649.&lt;br /&gt;
&lt;br /&gt;
[5] R.M. Arduini, K.L. Strauch, L.A. Runkel, M.M. Carlson, X.&lt;br /&gt;
Hronowski, S.F. Foley, et al., Characterization of a soluble&lt;br /&gt;
ternary complex formed between human interferon-beta-1a&lt;br /&gt;
and its receptor chains, Protein Sci. 8 (9) (Sep 1999)&lt;br /&gt;
1867–1877.&lt;br /&gt;
&lt;br /&gt;
[6] G. Uze, G. Schreiber, J. Piehler, S. Pellegrini, The receptor of the&lt;br /&gt;
type I interferon family, Curr. Top. Microbiol. Immunol. 316&lt;br /&gt;
(2007) 71–95.&lt;br /&gt;
&lt;br /&gt;
[7] C.M. Cleary, R.J. Donnelly, J. Soh, T.M. Mariano, S. Pestka,&lt;br /&gt;
Knockout and reconstitution of a functional human type I&lt;br /&gt;
interferon receptor complex, J. Biol. Chem. 269 (29)&lt;br /&gt;
(Jul 22 1994) 18747–18749.&lt;br /&gt;
&lt;br /&gt;
[8] J. Kumaran, O.R. Colamonici, E.N. Fish, Structure–function study&lt;br /&gt;
of the extracellular domain of the human type I interferon&lt;br /&gt;
receptor (IFNAR)-1 subunit, J. Interferon Cytokine Res. 20 (5)&lt;br /&gt;
(May 2000) 479–485.&lt;br /&gt;
&lt;br /&gt;
[9] J. Ghislain, G. Sussman, S. Goelz, L.E. Ling, E.N. Fish, Configuration&lt;br /&gt;
of the interferon-alpha/beta receptor complex determines the&lt;br /&gt;
context of the biological response, J. Biol. Chem. 270 (37)&lt;br /&gt;
(Sep 15 1995) 21785–21792.&lt;/div&gt;</summary>
		<author><name>Chengfeng Ren</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=User:Chengfeng_Ren/IFN_beta_1a&amp;diff=2071925</id>
		<title>User:Chengfeng Ren/IFN beta 1a</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=User:Chengfeng_Ren/IFN_beta_1a&amp;diff=2071925"/>
		<updated>2014-12-03T05:02:26Z</updated>

		<summary type="html">&lt;p&gt;Chengfeng Ren: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;Structure load=&#039;Insert PDB code or filename here&#039; size=&#039;500&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;Mouse interferon β 1a&#039; scene=&#039;56/566498/Interferon_beta_1a/1&#039; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;IFN Categories and IFNβ-1a sources&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Interferons&#039;&#039;&#039; (IFNs) are a family of helical cytokines that mediate&lt;br /&gt;
antiviral, antiproliferative, and immune modulatory activities in&lt;br /&gt;
response to biological and chemical stimuli. Two types of IFN are recognized on   &lt;br /&gt;
the basis of their physical and biological properties; type I, which   &lt;br /&gt;
contains the monomeric IFNs-α,-β,-τ, and -ω, and type II, the&lt;br /&gt;
only member of which is the dimeric IFN-γ. Representatives of all&lt;br /&gt;
type I and type II IFNs are found in humans, except for IFN-τ,&lt;br /&gt;
which is found only in ruminant ungulates. There are 12 different human IFNs-α;each one&lt;br /&gt;
comprising a different subtype,although 14 different genes have&lt;br /&gt;
been identified, whereas human IFN-β, IFN-ω, and IFN-γare&lt;br /&gt;
encoded by single genes[1].&lt;br /&gt;
&lt;br /&gt;
Interferon-β has two subtyes, interferon-β-1a and interferon-β-1b. Interferon-β-1a is naturally expressed in numerous cell types in human, including &lt;br /&gt;
fibroblasts, endothelial cells, epithelial cells and various leukocytes, however,Interferon-β-1b is produced in modified E. coli.&lt;br /&gt;
&lt;br /&gt;
Here is a jpg clearly illustrating IFNs categories.&lt;br /&gt;
[[Image:IFN categories.jpg]]&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;Structure info. of IFNβ-1a&#039;&#039;&#039;==&lt;br /&gt;
IFNβ-1a consisting of 166 amino acids, around 20KDa. It has 5 helixs. There are several &amp;lt;scene name=&#039;56/566503/Important_hydrophobic_residues/2&#039;&amp;gt;hydrophobic residues&amp;lt;/scene&amp;gt;,such as Phe-70, Phe-154, Trp-79, and Trp-143, that are involved in interactions with each other that stabilize the core of the molecule. In addition, residues of the core form several &amp;lt;scene name=&#039;56/566503/H-bonding/3&#039;&amp;gt;hydrogen bonding&amp;lt;/scene&amp;gt; such as between Gln-10 and Gln-94 and between Ser-118 and Thr-58. Additional interactions that appear to stabilize the loop are &amp;lt;scene name=&#039;56/566503/H-bonding/2&#039;&amp;gt;hydrogen bonds&amp;lt;/scene&amp;gt; between Tyr-132 OH and Asp-34 O and between Arg-147 N and Leu-24 O. Cys-31 forms a &amp;lt;scene name=&#039;56/566503/Disulfide_bridge/1&#039;&amp;gt;disulfide bridge&amp;lt;/scene&amp;gt; with Cys-141 of and plays an important role in the stabilization of protein structure.&lt;br /&gt;
Interferon-β-1a tends to aggregate and form dimers.&amp;lt;scene name=&#039;56/566503/Interferon_dimer/1&#039;&amp;gt;Interferon dimer&amp;lt;/scene&amp;gt;&lt;br /&gt;
A zinc ion is observed to exist at the interface between chains A and B. It is coordinated in a tetrahedral manner by His-121 of molecule A and His-93 and His-97 of molecule B. A water molecule occupies the fourth coordination site. A network of hydrogen bonds formed between His-121 and Glu-43 (molecule A) and between His-97 and Gln-94 (molecule B) appears to assist in the stabilization of the zinc-binding site. &lt;br /&gt;
&amp;lt;scene name=&#039;56/566498/Interferon_beta_1a/1&#039;&amp;gt;Interferon beta 1a&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;scene name=&#039;56/566503/Momomer_for_further_work/1&#039;&amp;gt;monomer for current work&amp;lt;/scene&amp;gt; chain A&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;IFNβ-1a biological activity and therapeutic effects&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
IFNβ-1a as well as other family of IFNs has a variety of biological activities, inluding antiviral, antiproliferative, and immune modulatory activities in response to biological and chemical stimuli[2]. &lt;br /&gt;
&lt;br /&gt;
IFNβ-1a is mainly used to treat relapsing forms of multiple sclerosis(MS).&lt;br /&gt;
MS is a life-long disease that affects your nervous system &lt;br /&gt;
by destroying the protective covering (myelin) that surrounds&lt;br /&gt;
your nerve fibers.&lt;br /&gt;
The commercial available drug format is [http://http://www.avonex.com/ Avonex].(Please refer to the drug guide before using it)&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;Mechanism of action for IFNβ-1a&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The IFNβreceptor, signaling cascade and gene regulation&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
The IFNβreceptor is composed of 2 required chains—a signaling&lt;br /&gt;
chain,&amp;lt;scene name=&#039;56/566498/Human_ifnar1/1&#039;&amp;gt;IFNAR1&amp;lt;/scene&amp;gt; , and a binding chain, &amp;lt;scene name=&#039;56/566498/Ifnar2/1&#039;&amp;gt;IFNAR2&amp;lt;/scene&amp;gt;. Both IFNAR1 and&lt;br /&gt;
IFNAR2 are constitutively expressed on the surface of virtually all cells. IFNβcan bind to IFNAR2 alone, but can bind to IFNAR1 only in&lt;br /&gt;
the presence of IFNAR2. The strength of IFNβbinding to its&lt;br /&gt;
receptor is much higher when both subunits are present.&lt;br /&gt;
Knockout experiments indicate that both IFNAR1 and IFNAR2 are&lt;br /&gt;
required for IFNβ activity, but it remains uncertain&lt;br /&gt;
whether there are auxiliary receptors or alternative receptor/&lt;br /&gt;
signaling complexes in some cell types.&lt;br /&gt;
The current view of events leading to IFNβbiological activity is&lt;br /&gt;
as follows: 1) IFN binds to the extracellular domain of&lt;br /&gt;
IFNAR2. 2) IFNAR1 then engages with the IFNβ–IFNAR2 complex,&lt;br /&gt;
forming the high-affinity receptor–ligand complex and allowing&lt;br /&gt;
the intracellular domains of the two receptor chains and&lt;br /&gt;
associated proteins to interact. 3) This interaction, which includes&lt;br /&gt;
JAK1 (associated with IFNAR2) and Tyk2 (associated with IFNAR1),&lt;br /&gt;
results in a cascade of phosphorylation events that leads to&lt;br /&gt;
activation of STATS. 4) Activated STATS form a complex with other&lt;br /&gt;
cytoplasmic proteins, which then translocate into the nucleus to&lt;br /&gt;
bind to Interferon Sensitive Response Elements (ISRE), transcriptional control regions which are upstream of many IFN regulated&lt;br /&gt;
genes. 5) This ISRE binding results in transcriptional regulation&lt;br /&gt;
(both induction and inhibition) of &amp;gt;1000 genes.&lt;br /&gt;
Thus, IFN regulates expression of a myriad of genes. While the&lt;br /&gt;
function of some of these genes is clear (e.g. the antiviral product&lt;br /&gt;
MxA), the specific transcripts mediating therapeutic benefit of&lt;br /&gt;
IFNβin MS are unknown. This is, in part, due to the complexity and&lt;br /&gt;
heterogeneity of MS, but also because IFNβis an agonist that can&lt;br /&gt;
induce the expression not only of ISRE regulated genes, but&lt;br /&gt;
through newly expressed transcription factors, can induce or&lt;br /&gt;
inhibit subsequent waves of gene expression. In addition, some&lt;br /&gt;
IFNβregulated proteins, which include cytokines and chemokines,&lt;br /&gt;
can alter the level or function of particular cell populations. The&lt;br /&gt;
resulting multifaceted biological response is in contrast to&lt;br /&gt;
therapies such as monoclonal antibodies that have a much more&lt;br /&gt;
specific molecular target[2-9].&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;Reference&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
[1] R. Arduini, K. Strauch, L. Rukel etal.Characterization of a soluble ternary complex formed&lt;br /&gt;
between human interferon-b-1a and its receptor chains&#039;&#039;Protein Science&#039;&#039; (1999),&#039;&#039;8&#039;&#039;:1867–1877&lt;br /&gt;
&lt;br /&gt;
[2] T. Taniguchi, A. Takaoka, The interferon-alpha/beta system in&lt;br /&gt;
antiviral responses: a multimodal machinery of gene regulation&lt;br /&gt;
by the IRF family of transcription factors, Curr. Opin. Immunol.&lt;br /&gt;
14 (1) (Feb 2002) 111–116.&lt;br /&gt;
&lt;br /&gt;
[3] K. Kasama, J. Utsumi, E. Matsuo-Ogawa, T. Nagahata, Y. Kagawa,&lt;br /&gt;
S. Yamazaki, et al., Pharmacokinetics and biologic activities of&lt;br /&gt;
human native and asialointerferon-beta s, J. Interferon Cytokine&lt;br /&gt;
Res. 15 (5) (May 1995) 407–415.&lt;br /&gt;
&lt;br /&gt;
[4] L. Runkel, W. Meier, R.B. Pepinsky, M. Karpusas, A. Whitty,&lt;br /&gt;
K. Kimball, et al., Structural and functional differences between&lt;br /&gt;
glycosylated and non-glycosylated forms of human&lt;br /&gt;
interferon-beta (IFN-beta), Pharm. Res. 15 (4) (Apr 1998)&lt;br /&gt;
641–649.&lt;br /&gt;
&lt;br /&gt;
[5] R.M. Arduini, K.L. Strauch, L.A. Runkel, M.M. Carlson, X.&lt;br /&gt;
Hronowski, S.F. Foley, et al., Characterization of a soluble&lt;br /&gt;
ternary complex formed between human interferon-beta-1a&lt;br /&gt;
and its receptor chains, Protein Sci. 8 (9) (Sep 1999)&lt;br /&gt;
1867–1877.&lt;br /&gt;
&lt;br /&gt;
[6] G. Uze, G. Schreiber, J. Piehler, S. Pellegrini, The receptor of the&lt;br /&gt;
type I interferon family, Curr. Top. Microbiol. Immunol. 316&lt;br /&gt;
(2007) 71–95.&lt;br /&gt;
&lt;br /&gt;
[7] C.M. Cleary, R.J. Donnelly, J. Soh, T.M. Mariano, S. Pestka,&lt;br /&gt;
Knockout and reconstitution of a functional human type I&lt;br /&gt;
interferon receptor complex, J. Biol. Chem. 269 (29)&lt;br /&gt;
(Jul 22 1994) 18747–18749.&lt;br /&gt;
&lt;br /&gt;
[8] J. Kumaran, O.R. Colamonici, E.N. Fish, Structure–function study&lt;br /&gt;
of the extracellular domain of the human type I interferon&lt;br /&gt;
receptor (IFNAR)-1 subunit, J. Interferon Cytokine Res. 20 (5)&lt;br /&gt;
(May 2000) 479–485.&lt;br /&gt;
&lt;br /&gt;
[9] J. Ghislain, G. Sussman, S. Goelz, L.E. Ling, E.N. Fish, Configuration&lt;br /&gt;
of the interferon-alpha/beta receptor complex determines the&lt;br /&gt;
context of the biological response, J. Biol. Chem. 270 (37)&lt;br /&gt;
(Sep 15 1995) 21785–21792.&lt;/div&gt;</summary>
		<author><name>Chengfeng Ren</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=User:Chengfeng_Ren/IFN_beta_1a&amp;diff=2071924</id>
		<title>User:Chengfeng Ren/IFN beta 1a</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=User:Chengfeng_Ren/IFN_beta_1a&amp;diff=2071924"/>
		<updated>2014-12-03T04:56:57Z</updated>

		<summary type="html">&lt;p&gt;Chengfeng Ren: /* &amp;#039;&amp;#039;&amp;#039;Structure info. of IFNβ-1a&amp;#039;&amp;#039;&amp;#039; */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;Structure load=&#039;Insert PDB code or filename here&#039; size=&#039;500&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;Mouse interferon β 1a&#039; scene=&#039;56/566498/Interferon_beta_1a/1&#039; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;IFN Categories and IFNβ-1a sources&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Interferons&#039;&#039;&#039; (IFNs) are a family of helical cytokines that mediate&lt;br /&gt;
antiviral, antiproliferative, and immune modulatory activities in&lt;br /&gt;
response to biological and chemical stimuli. Two types of IFN are recognized on   &lt;br /&gt;
the basis of their physical and biological properties; type I, which   &lt;br /&gt;
contains the monomeric IFNs-α,-β,-τ, and -ω, and type II, the&lt;br /&gt;
only member of which is the dimeric IFN-γ. Representatives of all&lt;br /&gt;
type I and type II IFNs are found in humans, except for IFN-τ,&lt;br /&gt;
which is found only in ruminant ungulates. There are 12 different human IFNs-α;each one&lt;br /&gt;
comprising a different subtype,although 14 different genes have&lt;br /&gt;
been identified, whereas human IFN-β, IFN-ω, and IFN-γare&lt;br /&gt;
encoded by single genes[1].&lt;br /&gt;
&lt;br /&gt;
Interferon-β has two subtyes, interferon-β-1a and interferon-β-1b. Interferon-β-1a is naturally expressed in numerous cell types in human, including &lt;br /&gt;
fibroblasts, endothelial cells, epithelial cells and various leukocytes, however,Interferon-β-1b is produced in modified E. coli.&lt;br /&gt;
Interferon-β-1a tends to aggregate and form dimers.&amp;lt;scene name=&#039;56/566503/Interferon_dimer/1&#039;&amp;gt;Interferon dimer&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Here is a jpg clearly illustrating IFNs categories.&lt;br /&gt;
[[Image:IFN categories.jpg]]&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;Structure info. of IFNβ-1a&#039;&#039;&#039;==&lt;br /&gt;
IFNβ-1a consisting of 166 amino acids, around 20KDa. It has 5 helixs. There are several &amp;lt;scene name=&#039;56/566503/Important_hydrophobic_residues/2&#039;&amp;gt;hydrophobic residues&amp;lt;/scene&amp;gt;,such as Phe-70, Phe-154, Trp-79, and Trp-143, that are involved in interactions with each other that stabilize the core of the molecule. In addition, residues of the core form several &amp;lt;scene name=&#039;56/566503/H-bonding/3&#039;&amp;gt;hydrogen bonding&amp;lt;/scene&amp;gt; such as between Gln-10 and Gln-94 and between Ser-118 and Thr-58. Additional interactions that appear to stabilize the loop are &amp;lt;scene name=&#039;56/566503/H-bonding/2&#039;&amp;gt;hydrogen bonds&amp;lt;/scene&amp;gt; between Tyr-132 OH and Asp-34 O and between Arg-147 N and Leu-24 O. Cys-31 forms a &amp;lt;scene name=&#039;56/566503/Disulfide_bridge/1&#039;&amp;gt;disulfide bridge&amp;lt;/scene&amp;gt; with Cys-141 of and plays an important role in the stabilization of protein structure&lt;br /&gt;
&amp;lt;scene name=&#039;56/566498/Interferon_beta_1a/1&#039;&amp;gt;Interferon beta 1a&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;scene name=&#039;56/566503/Momomer_for_further_work/1&#039;&amp;gt;monomer for current work&amp;lt;/scene&amp;gt; chain A&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;IFNβ-1a biological activity and therapeutic effects&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
IFNβ-1a as well as other family of IFNs has a variety of biological activities, inluding antiviral, antiproliferative, and immune modulatory activities in response to biological and chemical stimuli[2]. &lt;br /&gt;
&lt;br /&gt;
IFNβ-1a is mainly used to treat relapsing forms of multiple sclerosis(MS).&lt;br /&gt;
MS is a life-long disease that affects your nervous system &lt;br /&gt;
by destroying the protective covering (myelin) that surrounds&lt;br /&gt;
your nerve fibers.&lt;br /&gt;
The commercial available drug format is [http://http://www.avonex.com/ Avonex].(Please refer to the drug guide before using it)&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;Mechanism of action for IFNβ-1a&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The IFNβreceptor, signaling cascade and gene regulation&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
The IFNβreceptor is composed of 2 required chains—a signaling&lt;br /&gt;
chain,&amp;lt;scene name=&#039;56/566498/Human_ifnar1/1&#039;&amp;gt;IFNAR1&amp;lt;/scene&amp;gt; , and a binding chain, &amp;lt;scene name=&#039;56/566498/Ifnar2/1&#039;&amp;gt;IFNAR2&amp;lt;/scene&amp;gt;. Both IFNAR1 and&lt;br /&gt;
IFNAR2 are constitutively expressed on the surface of virtually all cells. IFNβcan bind to IFNAR2 alone, but can bind to IFNAR1 only in&lt;br /&gt;
the presence of IFNAR2. The strength of IFNβbinding to its&lt;br /&gt;
receptor is much higher when both subunits are present.&lt;br /&gt;
Knockout experiments indicate that both IFNAR1 and IFNAR2 are&lt;br /&gt;
required for IFNβ activity, but it remains uncertain&lt;br /&gt;
whether there are auxiliary receptors or alternative receptor/&lt;br /&gt;
signaling complexes in some cell types.&lt;br /&gt;
The current view of events leading to IFNβbiological activity is&lt;br /&gt;
as follows: 1) IFN binds to the extracellular domain of&lt;br /&gt;
IFNAR2. 2) IFNAR1 then engages with the IFNβ–IFNAR2 complex,&lt;br /&gt;
forming the high-affinity receptor–ligand complex and allowing&lt;br /&gt;
the intracellular domains of the two receptor chains and&lt;br /&gt;
associated proteins to interact. 3) This interaction, which includes&lt;br /&gt;
JAK1 (associated with IFNAR2) and Tyk2 (associated with IFNAR1),&lt;br /&gt;
results in a cascade of phosphorylation events that leads to&lt;br /&gt;
activation of STATS. 4) Activated STATS form a complex with other&lt;br /&gt;
cytoplasmic proteins, which then translocate into the nucleus to&lt;br /&gt;
bind to Interferon Sensitive Response Elements (ISRE), transcriptional control regions which are upstream of many IFN regulated&lt;br /&gt;
genes. 5) This ISRE binding results in transcriptional regulation&lt;br /&gt;
(both induction and inhibition) of &amp;gt;1000 genes.&lt;br /&gt;
Thus, IFN regulates expression of a myriad of genes. While the&lt;br /&gt;
function of some of these genes is clear (e.g. the antiviral product&lt;br /&gt;
MxA), the specific transcripts mediating therapeutic benefit of&lt;br /&gt;
IFNβin MS are unknown. This is, in part, due to the complexity and&lt;br /&gt;
heterogeneity of MS, but also because IFNβis an agonist that can&lt;br /&gt;
induce the expression not only of ISRE regulated genes, but&lt;br /&gt;
through newly expressed transcription factors, can induce or&lt;br /&gt;
inhibit subsequent waves of gene expression. In addition, some&lt;br /&gt;
IFNβregulated proteins, which include cytokines and chemokines,&lt;br /&gt;
can alter the level or function of particular cell populations. The&lt;br /&gt;
resulting multifaceted biological response is in contrast to&lt;br /&gt;
therapies such as monoclonal antibodies that have a much more&lt;br /&gt;
specific molecular target[2-9].&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;Reference&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
[1] R. Arduini, K. Strauch, L. Rukel etal.Characterization of a soluble ternary complex formed&lt;br /&gt;
between human interferon-b-1a and its receptor chains&#039;&#039;Protein Science&#039;&#039; (1999),&#039;&#039;8&#039;&#039;:1867–1877&lt;br /&gt;
&lt;br /&gt;
[2] T. Taniguchi, A. Takaoka, The interferon-alpha/beta system in&lt;br /&gt;
antiviral responses: a multimodal machinery of gene regulation&lt;br /&gt;
by the IRF family of transcription factors, Curr. Opin. Immunol.&lt;br /&gt;
14 (1) (Feb 2002) 111–116.&lt;br /&gt;
&lt;br /&gt;
[3] K. Kasama, J. Utsumi, E. Matsuo-Ogawa, T. Nagahata, Y. Kagawa,&lt;br /&gt;
S. Yamazaki, et al., Pharmacokinetics and biologic activities of&lt;br /&gt;
human native and asialointerferon-beta s, J. Interferon Cytokine&lt;br /&gt;
Res. 15 (5) (May 1995) 407–415.&lt;br /&gt;
&lt;br /&gt;
[4] L. Runkel, W. Meier, R.B. Pepinsky, M. Karpusas, A. Whitty,&lt;br /&gt;
K. Kimball, et al., Structural and functional differences between&lt;br /&gt;
glycosylated and non-glycosylated forms of human&lt;br /&gt;
interferon-beta (IFN-beta), Pharm. Res. 15 (4) (Apr 1998)&lt;br /&gt;
641–649.&lt;br /&gt;
&lt;br /&gt;
[5] R.M. Arduini, K.L. Strauch, L.A. Runkel, M.M. Carlson, X.&lt;br /&gt;
Hronowski, S.F. Foley, et al., Characterization of a soluble&lt;br /&gt;
ternary complex formed between human interferon-beta-1a&lt;br /&gt;
and its receptor chains, Protein Sci. 8 (9) (Sep 1999)&lt;br /&gt;
1867–1877.&lt;br /&gt;
&lt;br /&gt;
[6] G. Uze, G. Schreiber, J. Piehler, S. Pellegrini, The receptor of the&lt;br /&gt;
type I interferon family, Curr. Top. Microbiol. Immunol. 316&lt;br /&gt;
(2007) 71–95.&lt;br /&gt;
&lt;br /&gt;
[7] C.M. Cleary, R.J. Donnelly, J. Soh, T.M. Mariano, S. Pestka,&lt;br /&gt;
Knockout and reconstitution of a functional human type I&lt;br /&gt;
interferon receptor complex, J. Biol. Chem. 269 (29)&lt;br /&gt;
(Jul 22 1994) 18747–18749.&lt;br /&gt;
&lt;br /&gt;
[8] J. Kumaran, O.R. Colamonici, E.N. Fish, Structure–function study&lt;br /&gt;
of the extracellular domain of the human type I interferon&lt;br /&gt;
receptor (IFNAR)-1 subunit, J. Interferon Cytokine Res. 20 (5)&lt;br /&gt;
(May 2000) 479–485.&lt;br /&gt;
&lt;br /&gt;
[9] J. Ghislain, G. Sussman, S. Goelz, L.E. Ling, E.N. Fish, Configuration&lt;br /&gt;
of the interferon-alpha/beta receptor complex determines the&lt;br /&gt;
context of the biological response, J. Biol. Chem. 270 (37)&lt;br /&gt;
(Sep 15 1995) 21785–21792.&lt;/div&gt;</summary>
		<author><name>Chengfeng Ren</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=User:Chengfeng_Ren/IFN_beta_1a&amp;diff=2071923</id>
		<title>User:Chengfeng Ren/IFN beta 1a</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=User:Chengfeng_Ren/IFN_beta_1a&amp;diff=2071923"/>
		<updated>2014-12-03T04:48:17Z</updated>

		<summary type="html">&lt;p&gt;Chengfeng Ren: /* &amp;#039;&amp;#039;&amp;#039;Structure info. of IFNβ-1a&amp;#039;&amp;#039;&amp;#039; */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;Structure load=&#039;Insert PDB code or filename here&#039; size=&#039;500&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;Mouse interferon β 1a&#039; scene=&#039;56/566498/Interferon_beta_1a/1&#039; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;IFN Categories and IFNβ-1a sources&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Interferons&#039;&#039;&#039; (IFNs) are a family of helical cytokines that mediate&lt;br /&gt;
antiviral, antiproliferative, and immune modulatory activities in&lt;br /&gt;
response to biological and chemical stimuli. Two types of IFN are recognized on   &lt;br /&gt;
the basis of their physical and biological properties; type I, which   &lt;br /&gt;
contains the monomeric IFNs-α,-β,-τ, and -ω, and type II, the&lt;br /&gt;
only member of which is the dimeric IFN-γ. Representatives of all&lt;br /&gt;
type I and type II IFNs are found in humans, except for IFN-τ,&lt;br /&gt;
which is found only in ruminant ungulates. There are 12 different human IFNs-α;each one&lt;br /&gt;
comprising a different subtype,although 14 different genes have&lt;br /&gt;
been identified, whereas human IFN-β, IFN-ω, and IFN-γare&lt;br /&gt;
encoded by single genes[1].&lt;br /&gt;
&lt;br /&gt;
Interferon-β has two subtyes, interferon-β-1a and interferon-β-1b. Interferon-β-1a is naturally expressed in numerous cell types in human, including &lt;br /&gt;
fibroblasts, endothelial cells, epithelial cells and various leukocytes, however,Interferon-β-1b is produced in modified E. coli.&lt;br /&gt;
Interferon-β-1a tends to aggregate and form dimers.&amp;lt;scene name=&#039;56/566503/Interferon_dimer/1&#039;&amp;gt;Interferon dimer&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Here is a jpg clearly illustrating IFNs categories.&lt;br /&gt;
[[Image:IFN categories.jpg]]&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;Structure info. of IFNβ-1a&#039;&#039;&#039;==&lt;br /&gt;
IFNβ-1a consisting of 166 amino acids, around 20KDa. It has 5 helixs. There are several &amp;lt;scene name=&#039;56/566503/Important_hydrophobic_residues/2&#039;&amp;gt;hydrophobic residues&amp;lt;/scene&amp;gt;,such as Phe-70, Phe-154, Trp-79, and Trp-143, that are involved in interactions with each other that stabilize the core of the molecule. In addition, residues of the core form several &amp;lt;scene name=&#039;56/566503/H-bonding/3&#039;&amp;gt;hydrogen bonding&amp;lt;/scene&amp;gt; such as between Gln-10 and Gln-94 and between Ser-118 and Thr-58. Additional interactions that appear to stabilize the loop are &amp;lt;scene name=&#039;56/566503/H-bonding/2&#039;&amp;gt;hydrogen bonds&amp;lt;/scene&amp;gt; between Tyr-132 OH and Asp-34 O and between Arg-147 N and Leu-24 O. Cys-31 forms a disulfide bridge with Cys-141 of and plays an important role in the stabilization of protein structure&lt;br /&gt;
&amp;lt;scene name=&#039;56/566498/Interferon_beta_1a/1&#039;&amp;gt;Interferon beta 1a&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;scene name=&#039;56/566503/Momomer_for_further_work/1&#039;&amp;gt;monomer for current work&amp;lt;/scene&amp;gt; chain A&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;IFNβ-1a biological activity and therapeutic effects&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
IFNβ-1a as well as other family of IFNs has a variety of biological activities, inluding antiviral, antiproliferative, and immune modulatory activities in response to biological and chemical stimuli[2]. &lt;br /&gt;
&lt;br /&gt;
IFNβ-1a is mainly used to treat relapsing forms of multiple sclerosis(MS).&lt;br /&gt;
MS is a life-long disease that affects your nervous system &lt;br /&gt;
by destroying the protective covering (myelin) that surrounds&lt;br /&gt;
your nerve fibers.&lt;br /&gt;
The commercial available drug format is [http://http://www.avonex.com/ Avonex].(Please refer to the drug guide before using it)&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;Mechanism of action for IFNβ-1a&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The IFNβreceptor, signaling cascade and gene regulation&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
The IFNβreceptor is composed of 2 required chains—a signaling&lt;br /&gt;
chain,&amp;lt;scene name=&#039;56/566498/Human_ifnar1/1&#039;&amp;gt;IFNAR1&amp;lt;/scene&amp;gt; , and a binding chain, &amp;lt;scene name=&#039;56/566498/Ifnar2/1&#039;&amp;gt;IFNAR2&amp;lt;/scene&amp;gt;. Both IFNAR1 and&lt;br /&gt;
IFNAR2 are constitutively expressed on the surface of virtually all cells. IFNβcan bind to IFNAR2 alone, but can bind to IFNAR1 only in&lt;br /&gt;
the presence of IFNAR2. The strength of IFNβbinding to its&lt;br /&gt;
receptor is much higher when both subunits are present.&lt;br /&gt;
Knockout experiments indicate that both IFNAR1 and IFNAR2 are&lt;br /&gt;
required for IFNβ activity, but it remains uncertain&lt;br /&gt;
whether there are auxiliary receptors or alternative receptor/&lt;br /&gt;
signaling complexes in some cell types.&lt;br /&gt;
The current view of events leading to IFNβbiological activity is&lt;br /&gt;
as follows: 1) IFN binds to the extracellular domain of&lt;br /&gt;
IFNAR2. 2) IFNAR1 then engages with the IFNβ–IFNAR2 complex,&lt;br /&gt;
forming the high-affinity receptor–ligand complex and allowing&lt;br /&gt;
the intracellular domains of the two receptor chains and&lt;br /&gt;
associated proteins to interact. 3) This interaction, which includes&lt;br /&gt;
JAK1 (associated with IFNAR2) and Tyk2 (associated with IFNAR1),&lt;br /&gt;
results in a cascade of phosphorylation events that leads to&lt;br /&gt;
activation of STATS. 4) Activated STATS form a complex with other&lt;br /&gt;
cytoplasmic proteins, which then translocate into the nucleus to&lt;br /&gt;
bind to Interferon Sensitive Response Elements (ISRE), transcriptional control regions which are upstream of many IFN regulated&lt;br /&gt;
genes. 5) This ISRE binding results in transcriptional regulation&lt;br /&gt;
(both induction and inhibition) of &amp;gt;1000 genes.&lt;br /&gt;
Thus, IFN regulates expression of a myriad of genes. While the&lt;br /&gt;
function of some of these genes is clear (e.g. the antiviral product&lt;br /&gt;
MxA), the specific transcripts mediating therapeutic benefit of&lt;br /&gt;
IFNβin MS are unknown. This is, in part, due to the complexity and&lt;br /&gt;
heterogeneity of MS, but also because IFNβis an agonist that can&lt;br /&gt;
induce the expression not only of ISRE regulated genes, but&lt;br /&gt;
through newly expressed transcription factors, can induce or&lt;br /&gt;
inhibit subsequent waves of gene expression. In addition, some&lt;br /&gt;
IFNβregulated proteins, which include cytokines and chemokines,&lt;br /&gt;
can alter the level or function of particular cell populations. The&lt;br /&gt;
resulting multifaceted biological response is in contrast to&lt;br /&gt;
therapies such as monoclonal antibodies that have a much more&lt;br /&gt;
specific molecular target[2-9].&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;Reference&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
[1] R. Arduini, K. Strauch, L. Rukel etal.Characterization of a soluble ternary complex formed&lt;br /&gt;
between human interferon-b-1a and its receptor chains&#039;&#039;Protein Science&#039;&#039; (1999),&#039;&#039;8&#039;&#039;:1867–1877&lt;br /&gt;
&lt;br /&gt;
[2] T. Taniguchi, A. Takaoka, The interferon-alpha/beta system in&lt;br /&gt;
antiviral responses: a multimodal machinery of gene regulation&lt;br /&gt;
by the IRF family of transcription factors, Curr. Opin. Immunol.&lt;br /&gt;
14 (1) (Feb 2002) 111–116.&lt;br /&gt;
&lt;br /&gt;
[3] K. Kasama, J. Utsumi, E. Matsuo-Ogawa, T. Nagahata, Y. Kagawa,&lt;br /&gt;
S. Yamazaki, et al., Pharmacokinetics and biologic activities of&lt;br /&gt;
human native and asialointerferon-beta s, J. Interferon Cytokine&lt;br /&gt;
Res. 15 (5) (May 1995) 407–415.&lt;br /&gt;
&lt;br /&gt;
[4] L. Runkel, W. Meier, R.B. Pepinsky, M. Karpusas, A. Whitty,&lt;br /&gt;
K. Kimball, et al., Structural and functional differences between&lt;br /&gt;
glycosylated and non-glycosylated forms of human&lt;br /&gt;
interferon-beta (IFN-beta), Pharm. Res. 15 (4) (Apr 1998)&lt;br /&gt;
641–649.&lt;br /&gt;
&lt;br /&gt;
[5] R.M. Arduini, K.L. Strauch, L.A. Runkel, M.M. Carlson, X.&lt;br /&gt;
Hronowski, S.F. Foley, et al., Characterization of a soluble&lt;br /&gt;
ternary complex formed between human interferon-beta-1a&lt;br /&gt;
and its receptor chains, Protein Sci. 8 (9) (Sep 1999)&lt;br /&gt;
1867–1877.&lt;br /&gt;
&lt;br /&gt;
[6] G. Uze, G. Schreiber, J. Piehler, S. Pellegrini, The receptor of the&lt;br /&gt;
type I interferon family, Curr. Top. Microbiol. Immunol. 316&lt;br /&gt;
(2007) 71–95.&lt;br /&gt;
&lt;br /&gt;
[7] C.M. Cleary, R.J. Donnelly, J. Soh, T.M. Mariano, S. Pestka,&lt;br /&gt;
Knockout and reconstitution of a functional human type I&lt;br /&gt;
interferon receptor complex, J. Biol. Chem. 269 (29)&lt;br /&gt;
(Jul 22 1994) 18747–18749.&lt;br /&gt;
&lt;br /&gt;
[8] J. Kumaran, O.R. Colamonici, E.N. Fish, Structure–function study&lt;br /&gt;
of the extracellular domain of the human type I interferon&lt;br /&gt;
receptor (IFNAR)-1 subunit, J. Interferon Cytokine Res. 20 (5)&lt;br /&gt;
(May 2000) 479–485.&lt;br /&gt;
&lt;br /&gt;
[9] J. Ghislain, G. Sussman, S. Goelz, L.E. Ling, E.N. Fish, Configuration&lt;br /&gt;
of the interferon-alpha/beta receptor complex determines the&lt;br /&gt;
context of the biological response, J. Biol. Chem. 270 (37)&lt;br /&gt;
(Sep 15 1995) 21785–21792.&lt;/div&gt;</summary>
		<author><name>Chengfeng Ren</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=User:Chengfeng_Ren/IFN_beta_1a&amp;diff=2071922</id>
		<title>User:Chengfeng Ren/IFN beta 1a</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=User:Chengfeng_Ren/IFN_beta_1a&amp;diff=2071922"/>
		<updated>2014-12-03T04:45:54Z</updated>

		<summary type="html">&lt;p&gt;Chengfeng Ren: /* &amp;#039;&amp;#039;&amp;#039;Structure info. of IFNβ-1a&amp;#039;&amp;#039;&amp;#039; */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;Structure load=&#039;Insert PDB code or filename here&#039; size=&#039;500&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;Mouse interferon β 1a&#039; scene=&#039;56/566498/Interferon_beta_1a/1&#039; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;IFN Categories and IFNβ-1a sources&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Interferons&#039;&#039;&#039; (IFNs) are a family of helical cytokines that mediate&lt;br /&gt;
antiviral, antiproliferative, and immune modulatory activities in&lt;br /&gt;
response to biological and chemical stimuli. Two types of IFN are recognized on   &lt;br /&gt;
the basis of their physical and biological properties; type I, which   &lt;br /&gt;
contains the monomeric IFNs-α,-β,-τ, and -ω, and type II, the&lt;br /&gt;
only member of which is the dimeric IFN-γ. Representatives of all&lt;br /&gt;
type I and type II IFNs are found in humans, except for IFN-τ,&lt;br /&gt;
which is found only in ruminant ungulates. There are 12 different human IFNs-α;each one&lt;br /&gt;
comprising a different subtype,although 14 different genes have&lt;br /&gt;
been identified, whereas human IFN-β, IFN-ω, and IFN-γare&lt;br /&gt;
encoded by single genes[1].&lt;br /&gt;
&lt;br /&gt;
Interferon-β has two subtyes, interferon-β-1a and interferon-β-1b. Interferon-β-1a is naturally expressed in numerous cell types in human, including &lt;br /&gt;
fibroblasts, endothelial cells, epithelial cells and various leukocytes, however,Interferon-β-1b is produced in modified E. coli.&lt;br /&gt;
Interferon-β-1a tends to aggregate and form dimers.&amp;lt;scene name=&#039;56/566503/Interferon_dimer/1&#039;&amp;gt;Interferon dimer&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Here is a jpg clearly illustrating IFNs categories.&lt;br /&gt;
[[Image:IFN categories.jpg]]&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;Structure info. of IFNβ-1a&#039;&#039;&#039;==&lt;br /&gt;
IFNβ-1a consisting of 166 amino acids, around 20KDa. It has 5 helixs. There are several &amp;lt;scene name=&#039;56/566503/Important_hydrophobic_residues/2&#039;&amp;gt;hydrophobic residues&amp;lt;/scene&amp;gt;,such as Phe-70, Phe-154, Trp-79, and Trp-143, that are involved in interactions with each other that stabilize the core of the molecule. In addition, residues of the core form several &amp;lt;scene name=&#039;56/566503/H-bonding/1&#039;&amp;gt;hydrogen bonds&amp;lt;/scene&amp;gt; such as between Gln-10 and Gln-94 and between Ser-118 and Thr-58. Additional interactions that appear to stabilize the loop are &amp;lt;scene name=&#039;56/566503/H-bonding/2&#039;&amp;gt;hydrogen bonds&amp;lt;/scene&amp;gt; between Tyr-132 OH and Asp-34 O and between Arg-147 N and Leu-24 O. Cys-31 forms a disulfide bridge with Cys-141 of and plays an important role in the stabilization of protein structure&lt;br /&gt;
&amp;lt;scene name=&#039;56/566498/Interferon_beta_1a/1&#039;&amp;gt;Interferon beta 1a&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;scene name=&#039;56/566503/Momomer_for_further_work/1&#039;&amp;gt;monomer for current work&amp;lt;/scene&amp;gt; chain A&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;IFNβ-1a biological activity and therapeutic effects&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
IFNβ-1a as well as other family of IFNs has a variety of biological activities, inluding antiviral, antiproliferative, and immune modulatory activities in response to biological and chemical stimuli[2]. &lt;br /&gt;
&lt;br /&gt;
IFNβ-1a is mainly used to treat relapsing forms of multiple sclerosis(MS).&lt;br /&gt;
MS is a life-long disease that affects your nervous system &lt;br /&gt;
by destroying the protective covering (myelin) that surrounds&lt;br /&gt;
your nerve fibers.&lt;br /&gt;
The commercial available drug format is [http://http://www.avonex.com/ Avonex].(Please refer to the drug guide before using it)&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;Mechanism of action for IFNβ-1a&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The IFNβreceptor, signaling cascade and gene regulation&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
The IFNβreceptor is composed of 2 required chains—a signaling&lt;br /&gt;
chain,&amp;lt;scene name=&#039;56/566498/Human_ifnar1/1&#039;&amp;gt;IFNAR1&amp;lt;/scene&amp;gt; , and a binding chain, &amp;lt;scene name=&#039;56/566498/Ifnar2/1&#039;&amp;gt;IFNAR2&amp;lt;/scene&amp;gt;. Both IFNAR1 and&lt;br /&gt;
IFNAR2 are constitutively expressed on the surface of virtually all cells. IFNβcan bind to IFNAR2 alone, but can bind to IFNAR1 only in&lt;br /&gt;
the presence of IFNAR2. The strength of IFNβbinding to its&lt;br /&gt;
receptor is much higher when both subunits are present.&lt;br /&gt;
Knockout experiments indicate that both IFNAR1 and IFNAR2 are&lt;br /&gt;
required for IFNβ activity, but it remains uncertain&lt;br /&gt;
whether there are auxiliary receptors or alternative receptor/&lt;br /&gt;
signaling complexes in some cell types.&lt;br /&gt;
The current view of events leading to IFNβbiological activity is&lt;br /&gt;
as follows: 1) IFN binds to the extracellular domain of&lt;br /&gt;
IFNAR2. 2) IFNAR1 then engages with the IFNβ–IFNAR2 complex,&lt;br /&gt;
forming the high-affinity receptor–ligand complex and allowing&lt;br /&gt;
the intracellular domains of the two receptor chains and&lt;br /&gt;
associated proteins to interact. 3) This interaction, which includes&lt;br /&gt;
JAK1 (associated with IFNAR2) and Tyk2 (associated with IFNAR1),&lt;br /&gt;
results in a cascade of phosphorylation events that leads to&lt;br /&gt;
activation of STATS. 4) Activated STATS form a complex with other&lt;br /&gt;
cytoplasmic proteins, which then translocate into the nucleus to&lt;br /&gt;
bind to Interferon Sensitive Response Elements (ISRE), transcriptional control regions which are upstream of many IFN regulated&lt;br /&gt;
genes. 5) This ISRE binding results in transcriptional regulation&lt;br /&gt;
(both induction and inhibition) of &amp;gt;1000 genes.&lt;br /&gt;
Thus, IFN regulates expression of a myriad of genes. While the&lt;br /&gt;
function of some of these genes is clear (e.g. the antiviral product&lt;br /&gt;
MxA), the specific transcripts mediating therapeutic benefit of&lt;br /&gt;
IFNβin MS are unknown. This is, in part, due to the complexity and&lt;br /&gt;
heterogeneity of MS, but also because IFNβis an agonist that can&lt;br /&gt;
induce the expression not only of ISRE regulated genes, but&lt;br /&gt;
through newly expressed transcription factors, can induce or&lt;br /&gt;
inhibit subsequent waves of gene expression. In addition, some&lt;br /&gt;
IFNβregulated proteins, which include cytokines and chemokines,&lt;br /&gt;
can alter the level or function of particular cell populations. The&lt;br /&gt;
resulting multifaceted biological response is in contrast to&lt;br /&gt;
therapies such as monoclonal antibodies that have a much more&lt;br /&gt;
specific molecular target[2-9].&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;Reference&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
[1] R. Arduini, K. Strauch, L. Rukel etal.Characterization of a soluble ternary complex formed&lt;br /&gt;
between human interferon-b-1a and its receptor chains&#039;&#039;Protein Science&#039;&#039; (1999),&#039;&#039;8&#039;&#039;:1867–1877&lt;br /&gt;
&lt;br /&gt;
[2] T. Taniguchi, A. Takaoka, The interferon-alpha/beta system in&lt;br /&gt;
antiviral responses: a multimodal machinery of gene regulation&lt;br /&gt;
by the IRF family of transcription factors, Curr. Opin. Immunol.&lt;br /&gt;
14 (1) (Feb 2002) 111–116.&lt;br /&gt;
&lt;br /&gt;
[3] K. Kasama, J. Utsumi, E. Matsuo-Ogawa, T. Nagahata, Y. Kagawa,&lt;br /&gt;
S. Yamazaki, et al., Pharmacokinetics and biologic activities of&lt;br /&gt;
human native and asialointerferon-beta s, J. Interferon Cytokine&lt;br /&gt;
Res. 15 (5) (May 1995) 407–415.&lt;br /&gt;
&lt;br /&gt;
[4] L. Runkel, W. Meier, R.B. Pepinsky, M. Karpusas, A. Whitty,&lt;br /&gt;
K. Kimball, et al., Structural and functional differences between&lt;br /&gt;
glycosylated and non-glycosylated forms of human&lt;br /&gt;
interferon-beta (IFN-beta), Pharm. Res. 15 (4) (Apr 1998)&lt;br /&gt;
641–649.&lt;br /&gt;
&lt;br /&gt;
[5] R.M. Arduini, K.L. Strauch, L.A. Runkel, M.M. Carlson, X.&lt;br /&gt;
Hronowski, S.F. Foley, et al., Characterization of a soluble&lt;br /&gt;
ternary complex formed between human interferon-beta-1a&lt;br /&gt;
and its receptor chains, Protein Sci. 8 (9) (Sep 1999)&lt;br /&gt;
1867–1877.&lt;br /&gt;
&lt;br /&gt;
[6] G. Uze, G. Schreiber, J. Piehler, S. Pellegrini, The receptor of the&lt;br /&gt;
type I interferon family, Curr. Top. Microbiol. Immunol. 316&lt;br /&gt;
(2007) 71–95.&lt;br /&gt;
&lt;br /&gt;
[7] C.M. Cleary, R.J. Donnelly, J. Soh, T.M. Mariano, S. Pestka,&lt;br /&gt;
Knockout and reconstitution of a functional human type I&lt;br /&gt;
interferon receptor complex, J. Biol. Chem. 269 (29)&lt;br /&gt;
(Jul 22 1994) 18747–18749.&lt;br /&gt;
&lt;br /&gt;
[8] J. Kumaran, O.R. Colamonici, E.N. Fish, Structure–function study&lt;br /&gt;
of the extracellular domain of the human type I interferon&lt;br /&gt;
receptor (IFNAR)-1 subunit, J. Interferon Cytokine Res. 20 (5)&lt;br /&gt;
(May 2000) 479–485.&lt;br /&gt;
&lt;br /&gt;
[9] J. Ghislain, G. Sussman, S. Goelz, L.E. Ling, E.N. Fish, Configuration&lt;br /&gt;
of the interferon-alpha/beta receptor complex determines the&lt;br /&gt;
context of the biological response, J. Biol. Chem. 270 (37)&lt;br /&gt;
(Sep 15 1995) 21785–21792.&lt;/div&gt;</summary>
		<author><name>Chengfeng Ren</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=User:Chengfeng_Ren/IFN_beta_1a&amp;diff=2071921</id>
		<title>User:Chengfeng Ren/IFN beta 1a</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=User:Chengfeng_Ren/IFN_beta_1a&amp;diff=2071921"/>
		<updated>2014-12-03T04:43:28Z</updated>

		<summary type="html">&lt;p&gt;Chengfeng Ren: /* &amp;#039;&amp;#039;&amp;#039;Structure info. of IFNβ-1a&amp;#039;&amp;#039;&amp;#039; */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;Structure load=&#039;Insert PDB code or filename here&#039; size=&#039;500&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;Mouse interferon β 1a&#039; scene=&#039;56/566498/Interferon_beta_1a/1&#039; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;IFN Categories and IFNβ-1a sources&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Interferons&#039;&#039;&#039; (IFNs) are a family of helical cytokines that mediate&lt;br /&gt;
antiviral, antiproliferative, and immune modulatory activities in&lt;br /&gt;
response to biological and chemical stimuli. Two types of IFN are recognized on   &lt;br /&gt;
the basis of their physical and biological properties; type I, which   &lt;br /&gt;
contains the monomeric IFNs-α,-β,-τ, and -ω, and type II, the&lt;br /&gt;
only member of which is the dimeric IFN-γ. Representatives of all&lt;br /&gt;
type I and type II IFNs are found in humans, except for IFN-τ,&lt;br /&gt;
which is found only in ruminant ungulates. There are 12 different human IFNs-α;each one&lt;br /&gt;
comprising a different subtype,although 14 different genes have&lt;br /&gt;
been identified, whereas human IFN-β, IFN-ω, and IFN-γare&lt;br /&gt;
encoded by single genes[1].&lt;br /&gt;
&lt;br /&gt;
Interferon-β has two subtyes, interferon-β-1a and interferon-β-1b. Interferon-β-1a is naturally expressed in numerous cell types in human, including &lt;br /&gt;
fibroblasts, endothelial cells, epithelial cells and various leukocytes, however,Interferon-β-1b is produced in modified E. coli.&lt;br /&gt;
Interferon-β-1a tends to aggregate and form dimers.&amp;lt;scene name=&#039;56/566503/Interferon_dimer/1&#039;&amp;gt;Interferon dimer&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Here is a jpg clearly illustrating IFNs categories.&lt;br /&gt;
[[Image:IFN categories.jpg]]&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;Structure info. of IFNβ-1a&#039;&#039;&#039;==&lt;br /&gt;
IFNβ-1a consisting of 166 amino acids, around 20KDa. It has 5 helixs. There are several &amp;lt;scene name=&#039;56/566503/Important_hydrophobic_residues/1&#039;&amp;gt;hydrophobic residues&amp;lt;/scene&amp;gt;,such as Phe-70, Phe-154, Trp-79, and Trp-143, that are involved in interactions with each other that stabilize the core of the molecule. In addition, residues of the core form several &amp;lt;scene name=&#039;56/566503/H-bonding/1&#039;&amp;gt;hydrogen bonds&amp;lt;/scene&amp;gt; such as between Gln-10 and Gln-94 and between Ser-118 and Thr-58. Additional interactions that appear to stabilize the loop are &amp;lt;scene name=&#039;56/566503/H-bonding/2&#039;&amp;gt;hydrogen bonds&amp;lt;/scene&amp;gt; between Tyr-132 OH and Asp-34 O and between Arg-147 N and Leu-24 O. Cys-31 forms a disulfide bridge with Cys-141 of and plays an important role in the stabilization of protein structure&lt;br /&gt;
&amp;lt;scene name=&#039;56/566498/Interferon_beta_1a/1&#039;&amp;gt;Interferon beta 1a&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;scene name=&#039;56/566503/Momomer_for_further_work/1&#039;&amp;gt;monomer for current work&amp;lt;/scene&amp;gt; chain A&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;IFNβ-1a biological activity and therapeutic effects&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
IFNβ-1a as well as other family of IFNs has a variety of biological activities, inluding antiviral, antiproliferative, and immune modulatory activities in response to biological and chemical stimuli[2]. &lt;br /&gt;
&lt;br /&gt;
IFNβ-1a is mainly used to treat relapsing forms of multiple sclerosis(MS).&lt;br /&gt;
MS is a life-long disease that affects your nervous system &lt;br /&gt;
by destroying the protective covering (myelin) that surrounds&lt;br /&gt;
your nerve fibers.&lt;br /&gt;
The commercial available drug format is [http://http://www.avonex.com/ Avonex].(Please refer to the drug guide before using it)&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;Mechanism of action for IFNβ-1a&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The IFNβreceptor, signaling cascade and gene regulation&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
The IFNβreceptor is composed of 2 required chains—a signaling&lt;br /&gt;
chain,&amp;lt;scene name=&#039;56/566498/Human_ifnar1/1&#039;&amp;gt;IFNAR1&amp;lt;/scene&amp;gt; , and a binding chain, &amp;lt;scene name=&#039;56/566498/Ifnar2/1&#039;&amp;gt;IFNAR2&amp;lt;/scene&amp;gt;. Both IFNAR1 and&lt;br /&gt;
IFNAR2 are constitutively expressed on the surface of virtually all cells. IFNβcan bind to IFNAR2 alone, but can bind to IFNAR1 only in&lt;br /&gt;
the presence of IFNAR2. The strength of IFNβbinding to its&lt;br /&gt;
receptor is much higher when both subunits are present.&lt;br /&gt;
Knockout experiments indicate that both IFNAR1 and IFNAR2 are&lt;br /&gt;
required for IFNβ activity, but it remains uncertain&lt;br /&gt;
whether there are auxiliary receptors or alternative receptor/&lt;br /&gt;
signaling complexes in some cell types.&lt;br /&gt;
The current view of events leading to IFNβbiological activity is&lt;br /&gt;
as follows: 1) IFN binds to the extracellular domain of&lt;br /&gt;
IFNAR2. 2) IFNAR1 then engages with the IFNβ–IFNAR2 complex,&lt;br /&gt;
forming the high-affinity receptor–ligand complex and allowing&lt;br /&gt;
the intracellular domains of the two receptor chains and&lt;br /&gt;
associated proteins to interact. 3) This interaction, which includes&lt;br /&gt;
JAK1 (associated with IFNAR2) and Tyk2 (associated with IFNAR1),&lt;br /&gt;
results in a cascade of phosphorylation events that leads to&lt;br /&gt;
activation of STATS. 4) Activated STATS form a complex with other&lt;br /&gt;
cytoplasmic proteins, which then translocate into the nucleus to&lt;br /&gt;
bind to Interferon Sensitive Response Elements (ISRE), transcriptional control regions which are upstream of many IFN regulated&lt;br /&gt;
genes. 5) This ISRE binding results in transcriptional regulation&lt;br /&gt;
(both induction and inhibition) of &amp;gt;1000 genes.&lt;br /&gt;
Thus, IFN regulates expression of a myriad of genes. While the&lt;br /&gt;
function of some of these genes is clear (e.g. the antiviral product&lt;br /&gt;
MxA), the specific transcripts mediating therapeutic benefit of&lt;br /&gt;
IFNβin MS are unknown. This is, in part, due to the complexity and&lt;br /&gt;
heterogeneity of MS, but also because IFNβis an agonist that can&lt;br /&gt;
induce the expression not only of ISRE regulated genes, but&lt;br /&gt;
through newly expressed transcription factors, can induce or&lt;br /&gt;
inhibit subsequent waves of gene expression. In addition, some&lt;br /&gt;
IFNβregulated proteins, which include cytokines and chemokines,&lt;br /&gt;
can alter the level or function of particular cell populations. The&lt;br /&gt;
resulting multifaceted biological response is in contrast to&lt;br /&gt;
therapies such as monoclonal antibodies that have a much more&lt;br /&gt;
specific molecular target[2-9].&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;Reference&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
[1] R. Arduini, K. Strauch, L. Rukel etal.Characterization of a soluble ternary complex formed&lt;br /&gt;
between human interferon-b-1a and its receptor chains&#039;&#039;Protein Science&#039;&#039; (1999),&#039;&#039;8&#039;&#039;:1867–1877&lt;br /&gt;
&lt;br /&gt;
[2] T. Taniguchi, A. Takaoka, The interferon-alpha/beta system in&lt;br /&gt;
antiviral responses: a multimodal machinery of gene regulation&lt;br /&gt;
by the IRF family of transcription factors, Curr. Opin. Immunol.&lt;br /&gt;
14 (1) (Feb 2002) 111–116.&lt;br /&gt;
&lt;br /&gt;
[3] K. Kasama, J. Utsumi, E. Matsuo-Ogawa, T. Nagahata, Y. Kagawa,&lt;br /&gt;
S. Yamazaki, et al., Pharmacokinetics and biologic activities of&lt;br /&gt;
human native and asialointerferon-beta s, J. Interferon Cytokine&lt;br /&gt;
Res. 15 (5) (May 1995) 407–415.&lt;br /&gt;
&lt;br /&gt;
[4] L. Runkel, W. Meier, R.B. Pepinsky, M. Karpusas, A. Whitty,&lt;br /&gt;
K. Kimball, et al., Structural and functional differences between&lt;br /&gt;
glycosylated and non-glycosylated forms of human&lt;br /&gt;
interferon-beta (IFN-beta), Pharm. Res. 15 (4) (Apr 1998)&lt;br /&gt;
641–649.&lt;br /&gt;
&lt;br /&gt;
[5] R.M. Arduini, K.L. Strauch, L.A. Runkel, M.M. Carlson, X.&lt;br /&gt;
Hronowski, S.F. Foley, et al., Characterization of a soluble&lt;br /&gt;
ternary complex formed between human interferon-beta-1a&lt;br /&gt;
and its receptor chains, Protein Sci. 8 (9) (Sep 1999)&lt;br /&gt;
1867–1877.&lt;br /&gt;
&lt;br /&gt;
[6] G. Uze, G. Schreiber, J. Piehler, S. Pellegrini, The receptor of the&lt;br /&gt;
type I interferon family, Curr. Top. Microbiol. Immunol. 316&lt;br /&gt;
(2007) 71–95.&lt;br /&gt;
&lt;br /&gt;
[7] C.M. Cleary, R.J. Donnelly, J. Soh, T.M. Mariano, S. Pestka,&lt;br /&gt;
Knockout and reconstitution of a functional human type I&lt;br /&gt;
interferon receptor complex, J. Biol. Chem. 269 (29)&lt;br /&gt;
(Jul 22 1994) 18747–18749.&lt;br /&gt;
&lt;br /&gt;
[8] J. Kumaran, O.R. Colamonici, E.N. Fish, Structure–function study&lt;br /&gt;
of the extracellular domain of the human type I interferon&lt;br /&gt;
receptor (IFNAR)-1 subunit, J. Interferon Cytokine Res. 20 (5)&lt;br /&gt;
(May 2000) 479–485.&lt;br /&gt;
&lt;br /&gt;
[9] J. Ghislain, G. Sussman, S. Goelz, L.E. Ling, E.N. Fish, Configuration&lt;br /&gt;
of the interferon-alpha/beta receptor complex determines the&lt;br /&gt;
context of the biological response, J. Biol. Chem. 270 (37)&lt;br /&gt;
(Sep 15 1995) 21785–21792.&lt;/div&gt;</summary>
		<author><name>Chengfeng Ren</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=User:Chengfeng_Ren/IFN_beta_1a&amp;diff=2071920</id>
		<title>User:Chengfeng Ren/IFN beta 1a</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=User:Chengfeng_Ren/IFN_beta_1a&amp;diff=2071920"/>
		<updated>2014-12-03T04:31:33Z</updated>

		<summary type="html">&lt;p&gt;Chengfeng Ren: /* &amp;#039;&amp;#039;&amp;#039;Structure info. of IFNβ-1a&amp;#039;&amp;#039;&amp;#039; */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;Structure load=&#039;Insert PDB code or filename here&#039; size=&#039;500&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;Mouse interferon β 1a&#039; scene=&#039;56/566498/Interferon_beta_1a/1&#039; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;IFN Categories and IFNβ-1a sources&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Interferons&#039;&#039;&#039; (IFNs) are a family of helical cytokines that mediate&lt;br /&gt;
antiviral, antiproliferative, and immune modulatory activities in&lt;br /&gt;
response to biological and chemical stimuli. Two types of IFN are recognized on   &lt;br /&gt;
the basis of their physical and biological properties; type I, which   &lt;br /&gt;
contains the monomeric IFNs-α,-β,-τ, and -ω, and type II, the&lt;br /&gt;
only member of which is the dimeric IFN-γ. Representatives of all&lt;br /&gt;
type I and type II IFNs are found in humans, except for IFN-τ,&lt;br /&gt;
which is found only in ruminant ungulates. There are 12 different human IFNs-α;each one&lt;br /&gt;
comprising a different subtype,although 14 different genes have&lt;br /&gt;
been identified, whereas human IFN-β, IFN-ω, and IFN-γare&lt;br /&gt;
encoded by single genes[1].&lt;br /&gt;
&lt;br /&gt;
Interferon-β has two subtyes, interferon-β-1a and interferon-β-1b. Interferon-β-1a is naturally expressed in numerous cell types in human, including &lt;br /&gt;
fibroblasts, endothelial cells, epithelial cells and various leukocytes, however,Interferon-β-1b is produced in modified E. coli.&lt;br /&gt;
Interferon-β-1a tends to aggregate and form dimers.&amp;lt;scene name=&#039;56/566503/Interferon_dimer/1&#039;&amp;gt;Interferon dimer&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Here is a jpg clearly illustrating IFNs categories.&lt;br /&gt;
[[Image:IFN categories.jpg]]&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;Structure info. of IFNβ-1a&#039;&#039;&#039;==&lt;br /&gt;
IFNβ-1a consisting of 166 amino acids, around 20KDa. It has 5 helixs. There are several &amp;lt;scene name=&#039;56/566503/Important_hydrophobic_residues/1&#039;&amp;gt;hydrophobic residues&amp;lt;/scene&amp;gt;,such as Phe-70, Phe-154, Trp-79, and Trp-143, that are involved in interactions with each other that stabilize the core of the molecule. In addition, residues of the core form several &amp;lt;scene name=&#039;56/566503/H-bonding/1&#039;&amp;gt;hydrogen bonds&amp;lt;/scene&amp;gt; such as between Gln-10 and Gln-94 and between Ser-118 and Thr-58.&lt;br /&gt;
&amp;lt;scene name=&#039;56/566498/Interferon_beta_1a/1&#039;&amp;gt;Interferon beta 1a&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;scene name=&#039;56/566503/Momomer_for_further_work/1&#039;&amp;gt;monomer for current work&amp;lt;/scene&amp;gt; chain A&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;IFNβ-1a biological activity and therapeutic effects&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
IFNβ-1a as well as other family of IFNs has a variety of biological activities, inluding antiviral, antiproliferative, and immune modulatory activities in response to biological and chemical stimuli[2]. &lt;br /&gt;
&lt;br /&gt;
IFNβ-1a is mainly used to treat relapsing forms of multiple sclerosis(MS).&lt;br /&gt;
MS is a life-long disease that affects your nervous system &lt;br /&gt;
by destroying the protective covering (myelin) that surrounds&lt;br /&gt;
your nerve fibers.&lt;br /&gt;
The commercial available drug format is [http://http://www.avonex.com/ Avonex].(Please refer to the drug guide before using it)&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;Mechanism of action for IFNβ-1a&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The IFNβreceptor, signaling cascade and gene regulation&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
The IFNβreceptor is composed of 2 required chains—a signaling&lt;br /&gt;
chain,&amp;lt;scene name=&#039;56/566498/Human_ifnar1/1&#039;&amp;gt;IFNAR1&amp;lt;/scene&amp;gt; , and a binding chain, &amp;lt;scene name=&#039;56/566498/Ifnar2/1&#039;&amp;gt;IFNAR2&amp;lt;/scene&amp;gt;. Both IFNAR1 and&lt;br /&gt;
IFNAR2 are constitutively expressed on the surface of virtually all cells. IFNβcan bind to IFNAR2 alone, but can bind to IFNAR1 only in&lt;br /&gt;
the presence of IFNAR2. The strength of IFNβbinding to its&lt;br /&gt;
receptor is much higher when both subunits are present.&lt;br /&gt;
Knockout experiments indicate that both IFNAR1 and IFNAR2 are&lt;br /&gt;
required for IFNβ activity, but it remains uncertain&lt;br /&gt;
whether there are auxiliary receptors or alternative receptor/&lt;br /&gt;
signaling complexes in some cell types.&lt;br /&gt;
The current view of events leading to IFNβbiological activity is&lt;br /&gt;
as follows: 1) IFN binds to the extracellular domain of&lt;br /&gt;
IFNAR2. 2) IFNAR1 then engages with the IFNβ–IFNAR2 complex,&lt;br /&gt;
forming the high-affinity receptor–ligand complex and allowing&lt;br /&gt;
the intracellular domains of the two receptor chains and&lt;br /&gt;
associated proteins to interact. 3) This interaction, which includes&lt;br /&gt;
JAK1 (associated with IFNAR2) and Tyk2 (associated with IFNAR1),&lt;br /&gt;
results in a cascade of phosphorylation events that leads to&lt;br /&gt;
activation of STATS. 4) Activated STATS form a complex with other&lt;br /&gt;
cytoplasmic proteins, which then translocate into the nucleus to&lt;br /&gt;
bind to Interferon Sensitive Response Elements (ISRE), transcriptional control regions which are upstream of many IFN regulated&lt;br /&gt;
genes. 5) This ISRE binding results in transcriptional regulation&lt;br /&gt;
(both induction and inhibition) of &amp;gt;1000 genes.&lt;br /&gt;
Thus, IFN regulates expression of a myriad of genes. While the&lt;br /&gt;
function of some of these genes is clear (e.g. the antiviral product&lt;br /&gt;
MxA), the specific transcripts mediating therapeutic benefit of&lt;br /&gt;
IFNβin MS are unknown. This is, in part, due to the complexity and&lt;br /&gt;
heterogeneity of MS, but also because IFNβis an agonist that can&lt;br /&gt;
induce the expression not only of ISRE regulated genes, but&lt;br /&gt;
through newly expressed transcription factors, can induce or&lt;br /&gt;
inhibit subsequent waves of gene expression. In addition, some&lt;br /&gt;
IFNβregulated proteins, which include cytokines and chemokines,&lt;br /&gt;
can alter the level or function of particular cell populations. The&lt;br /&gt;
resulting multifaceted biological response is in contrast to&lt;br /&gt;
therapies such as monoclonal antibodies that have a much more&lt;br /&gt;
specific molecular target[2-9].&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;Reference&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
[1] R. Arduini, K. Strauch, L. Rukel etal.Characterization of a soluble ternary complex formed&lt;br /&gt;
between human interferon-b-1a and its receptor chains&#039;&#039;Protein Science&#039;&#039; (1999),&#039;&#039;8&#039;&#039;:1867–1877&lt;br /&gt;
&lt;br /&gt;
[2] T. Taniguchi, A. Takaoka, The interferon-alpha/beta system in&lt;br /&gt;
antiviral responses: a multimodal machinery of gene regulation&lt;br /&gt;
by the IRF family of transcription factors, Curr. Opin. Immunol.&lt;br /&gt;
14 (1) (Feb 2002) 111–116.&lt;br /&gt;
&lt;br /&gt;
[3] K. Kasama, J. Utsumi, E. Matsuo-Ogawa, T. Nagahata, Y. Kagawa,&lt;br /&gt;
S. Yamazaki, et al., Pharmacokinetics and biologic activities of&lt;br /&gt;
human native and asialointerferon-beta s, J. Interferon Cytokine&lt;br /&gt;
Res. 15 (5) (May 1995) 407–415.&lt;br /&gt;
&lt;br /&gt;
[4] L. Runkel, W. Meier, R.B. Pepinsky, M. Karpusas, A. Whitty,&lt;br /&gt;
K. Kimball, et al., Structural and functional differences between&lt;br /&gt;
glycosylated and non-glycosylated forms of human&lt;br /&gt;
interferon-beta (IFN-beta), Pharm. Res. 15 (4) (Apr 1998)&lt;br /&gt;
641–649.&lt;br /&gt;
&lt;br /&gt;
[5] R.M. Arduini, K.L. Strauch, L.A. Runkel, M.M. Carlson, X.&lt;br /&gt;
Hronowski, S.F. Foley, et al., Characterization of a soluble&lt;br /&gt;
ternary complex formed between human interferon-beta-1a&lt;br /&gt;
and its receptor chains, Protein Sci. 8 (9) (Sep 1999)&lt;br /&gt;
1867–1877.&lt;br /&gt;
&lt;br /&gt;
[6] G. Uze, G. Schreiber, J. Piehler, S. Pellegrini, The receptor of the&lt;br /&gt;
type I interferon family, Curr. Top. Microbiol. Immunol. 316&lt;br /&gt;
(2007) 71–95.&lt;br /&gt;
&lt;br /&gt;
[7] C.M. Cleary, R.J. Donnelly, J. Soh, T.M. Mariano, S. Pestka,&lt;br /&gt;
Knockout and reconstitution of a functional human type I&lt;br /&gt;
interferon receptor complex, J. Biol. Chem. 269 (29)&lt;br /&gt;
(Jul 22 1994) 18747–18749.&lt;br /&gt;
&lt;br /&gt;
[8] J. Kumaran, O.R. Colamonici, E.N. Fish, Structure–function study&lt;br /&gt;
of the extracellular domain of the human type I interferon&lt;br /&gt;
receptor (IFNAR)-1 subunit, J. Interferon Cytokine Res. 20 (5)&lt;br /&gt;
(May 2000) 479–485.&lt;br /&gt;
&lt;br /&gt;
[9] J. Ghislain, G. Sussman, S. Goelz, L.E. Ling, E.N. Fish, Configuration&lt;br /&gt;
of the interferon-alpha/beta receptor complex determines the&lt;br /&gt;
context of the biological response, J. Biol. Chem. 270 (37)&lt;br /&gt;
(Sep 15 1995) 21785–21792.&lt;/div&gt;</summary>
		<author><name>Chengfeng Ren</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=User:Chengfeng_Ren/IFN_beta_1a&amp;diff=2071919</id>
		<title>User:Chengfeng Ren/IFN beta 1a</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=User:Chengfeng_Ren/IFN_beta_1a&amp;diff=2071919"/>
		<updated>2014-12-03T04:21:16Z</updated>

		<summary type="html">&lt;p&gt;Chengfeng Ren: /* &amp;#039;&amp;#039;&amp;#039;Structure info. of IFNβ-1a&amp;#039;&amp;#039;&amp;#039; */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;Structure load=&#039;Insert PDB code or filename here&#039; size=&#039;500&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;Mouse interferon β 1a&#039; scene=&#039;56/566498/Interferon_beta_1a/1&#039; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;IFN Categories and IFNβ-1a sources&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Interferons&#039;&#039;&#039; (IFNs) are a family of helical cytokines that mediate&lt;br /&gt;
antiviral, antiproliferative, and immune modulatory activities in&lt;br /&gt;
response to biological and chemical stimuli. Two types of IFN are recognized on   &lt;br /&gt;
the basis of their physical and biological properties; type I, which   &lt;br /&gt;
contains the monomeric IFNs-α,-β,-τ, and -ω, and type II, the&lt;br /&gt;
only member of which is the dimeric IFN-γ. Representatives of all&lt;br /&gt;
type I and type II IFNs are found in humans, except for IFN-τ,&lt;br /&gt;
which is found only in ruminant ungulates. There are 12 different human IFNs-α;each one&lt;br /&gt;
comprising a different subtype,although 14 different genes have&lt;br /&gt;
been identified, whereas human IFN-β, IFN-ω, and IFN-γare&lt;br /&gt;
encoded by single genes[1].&lt;br /&gt;
&lt;br /&gt;
Interferon-β has two subtyes, interferon-β-1a and interferon-β-1b. Interferon-β-1a is naturally expressed in numerous cell types in human, including &lt;br /&gt;
fibroblasts, endothelial cells, epithelial cells and various leukocytes, however,Interferon-β-1b is produced in modified E. coli.&lt;br /&gt;
Interferon-β-1a tends to aggregate and form dimers.&amp;lt;scene name=&#039;56/566503/Interferon_dimer/1&#039;&amp;gt;Interferon dimer&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Here is a jpg clearly illustrating IFNs categories.&lt;br /&gt;
[[Image:IFN categories.jpg]]&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;Structure info. of IFNβ-1a&#039;&#039;&#039;==&lt;br /&gt;
IFNβ-1a consisting of 166 amino acids, around 20KDa. It has 5 helixs. There are several &amp;lt;scene name=&#039;56/566503/Important_hydrophobic_residues/1&#039;&amp;gt;hydrophobic residues&amp;lt;/scene&amp;gt;,such as Phe-70, Phe-154, Trp-79, and Trp-143, that are involved in interactions with each other that stabilize the core of the molecule. In addition, residues of the core form several&lt;br /&gt;
hydrogen bonds such as between Gln-10 and Gln-94 and between Ser-118 and Thr-58.&lt;br /&gt;
&amp;lt;scene name=&#039;56/566498/Interferon_beta_1a/1&#039;&amp;gt;Interferon beta 1a&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;scene name=&#039;56/566503/Momomer_for_further_work/1&#039;&amp;gt;monomer for current work&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;IFNβ-1a biological activity and therapeutic effects&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
IFNβ-1a as well as other family of IFNs has a variety of biological activities, inluding antiviral, antiproliferative, and immune modulatory activities in response to biological and chemical stimuli[2]. &lt;br /&gt;
&lt;br /&gt;
IFNβ-1a is mainly used to treat relapsing forms of multiple sclerosis(MS).&lt;br /&gt;
MS is a life-long disease that affects your nervous system &lt;br /&gt;
by destroying the protective covering (myelin) that surrounds&lt;br /&gt;
your nerve fibers.&lt;br /&gt;
The commercial available drug format is [http://http://www.avonex.com/ Avonex].(Please refer to the drug guide before using it)&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;Mechanism of action for IFNβ-1a&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The IFNβreceptor, signaling cascade and gene regulation&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
The IFNβreceptor is composed of 2 required chains—a signaling&lt;br /&gt;
chain,&amp;lt;scene name=&#039;56/566498/Human_ifnar1/1&#039;&amp;gt;IFNAR1&amp;lt;/scene&amp;gt; , and a binding chain, &amp;lt;scene name=&#039;56/566498/Ifnar2/1&#039;&amp;gt;IFNAR2&amp;lt;/scene&amp;gt;. Both IFNAR1 and&lt;br /&gt;
IFNAR2 are constitutively expressed on the surface of virtually all cells. IFNβcan bind to IFNAR2 alone, but can bind to IFNAR1 only in&lt;br /&gt;
the presence of IFNAR2. The strength of IFNβbinding to its&lt;br /&gt;
receptor is much higher when both subunits are present.&lt;br /&gt;
Knockout experiments indicate that both IFNAR1 and IFNAR2 are&lt;br /&gt;
required for IFNβ activity, but it remains uncertain&lt;br /&gt;
whether there are auxiliary receptors or alternative receptor/&lt;br /&gt;
signaling complexes in some cell types.&lt;br /&gt;
The current view of events leading to IFNβbiological activity is&lt;br /&gt;
as follows: 1) IFN binds to the extracellular domain of&lt;br /&gt;
IFNAR2. 2) IFNAR1 then engages with the IFNβ–IFNAR2 complex,&lt;br /&gt;
forming the high-affinity receptor–ligand complex and allowing&lt;br /&gt;
the intracellular domains of the two receptor chains and&lt;br /&gt;
associated proteins to interact. 3) This interaction, which includes&lt;br /&gt;
JAK1 (associated with IFNAR2) and Tyk2 (associated with IFNAR1),&lt;br /&gt;
results in a cascade of phosphorylation events that leads to&lt;br /&gt;
activation of STATS. 4) Activated STATS form a complex with other&lt;br /&gt;
cytoplasmic proteins, which then translocate into the nucleus to&lt;br /&gt;
bind to Interferon Sensitive Response Elements (ISRE), transcriptional control regions which are upstream of many IFN regulated&lt;br /&gt;
genes. 5) This ISRE binding results in transcriptional regulation&lt;br /&gt;
(both induction and inhibition) of &amp;gt;1000 genes.&lt;br /&gt;
Thus, IFN regulates expression of a myriad of genes. While the&lt;br /&gt;
function of some of these genes is clear (e.g. the antiviral product&lt;br /&gt;
MxA), the specific transcripts mediating therapeutic benefit of&lt;br /&gt;
IFNβin MS are unknown. This is, in part, due to the complexity and&lt;br /&gt;
heterogeneity of MS, but also because IFNβis an agonist that can&lt;br /&gt;
induce the expression not only of ISRE regulated genes, but&lt;br /&gt;
through newly expressed transcription factors, can induce or&lt;br /&gt;
inhibit subsequent waves of gene expression. In addition, some&lt;br /&gt;
IFNβregulated proteins, which include cytokines and chemokines,&lt;br /&gt;
can alter the level or function of particular cell populations. The&lt;br /&gt;
resulting multifaceted biological response is in contrast to&lt;br /&gt;
therapies such as monoclonal antibodies that have a much more&lt;br /&gt;
specific molecular target[2-9].&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;Reference&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
[1] R. Arduini, K. Strauch, L. Rukel etal.Characterization of a soluble ternary complex formed&lt;br /&gt;
between human interferon-b-1a and its receptor chains&#039;&#039;Protein Science&#039;&#039; (1999),&#039;&#039;8&#039;&#039;:1867–1877&lt;br /&gt;
&lt;br /&gt;
[2] T. Taniguchi, A. Takaoka, The interferon-alpha/beta system in&lt;br /&gt;
antiviral responses: a multimodal machinery of gene regulation&lt;br /&gt;
by the IRF family of transcription factors, Curr. Opin. Immunol.&lt;br /&gt;
14 (1) (Feb 2002) 111–116.&lt;br /&gt;
&lt;br /&gt;
[3] K. Kasama, J. Utsumi, E. Matsuo-Ogawa, T. Nagahata, Y. Kagawa,&lt;br /&gt;
S. Yamazaki, et al., Pharmacokinetics and biologic activities of&lt;br /&gt;
human native and asialointerferon-beta s, J. Interferon Cytokine&lt;br /&gt;
Res. 15 (5) (May 1995) 407–415.&lt;br /&gt;
&lt;br /&gt;
[4] L. Runkel, W. Meier, R.B. Pepinsky, M. Karpusas, A. Whitty,&lt;br /&gt;
K. Kimball, et al., Structural and functional differences between&lt;br /&gt;
glycosylated and non-glycosylated forms of human&lt;br /&gt;
interferon-beta (IFN-beta), Pharm. Res. 15 (4) (Apr 1998)&lt;br /&gt;
641–649.&lt;br /&gt;
&lt;br /&gt;
[5] R.M. Arduini, K.L. Strauch, L.A. Runkel, M.M. Carlson, X.&lt;br /&gt;
Hronowski, S.F. Foley, et al., Characterization of a soluble&lt;br /&gt;
ternary complex formed between human interferon-beta-1a&lt;br /&gt;
and its receptor chains, Protein Sci. 8 (9) (Sep 1999)&lt;br /&gt;
1867–1877.&lt;br /&gt;
&lt;br /&gt;
[6] G. Uze, G. Schreiber, J. Piehler, S. Pellegrini, The receptor of the&lt;br /&gt;
type I interferon family, Curr. Top. Microbiol. Immunol. 316&lt;br /&gt;
(2007) 71–95.&lt;br /&gt;
&lt;br /&gt;
[7] C.M. Cleary, R.J. Donnelly, J. Soh, T.M. Mariano, S. Pestka,&lt;br /&gt;
Knockout and reconstitution of a functional human type I&lt;br /&gt;
interferon receptor complex, J. Biol. Chem. 269 (29)&lt;br /&gt;
(Jul 22 1994) 18747–18749.&lt;br /&gt;
&lt;br /&gt;
[8] J. Kumaran, O.R. Colamonici, E.N. Fish, Structure–function study&lt;br /&gt;
of the extracellular domain of the human type I interferon&lt;br /&gt;
receptor (IFNAR)-1 subunit, J. Interferon Cytokine Res. 20 (5)&lt;br /&gt;
(May 2000) 479–485.&lt;br /&gt;
&lt;br /&gt;
[9] J. Ghislain, G. Sussman, S. Goelz, L.E. Ling, E.N. Fish, Configuration&lt;br /&gt;
of the interferon-alpha/beta receptor complex determines the&lt;br /&gt;
context of the biological response, J. Biol. Chem. 270 (37)&lt;br /&gt;
(Sep 15 1995) 21785–21792.&lt;/div&gt;</summary>
		<author><name>Chengfeng Ren</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=User:Chengfeng_Ren/IFN_beta_1a&amp;diff=2071916</id>
		<title>User:Chengfeng Ren/IFN beta 1a</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=User:Chengfeng_Ren/IFN_beta_1a&amp;diff=2071916"/>
		<updated>2014-12-03T03:57:24Z</updated>

		<summary type="html">&lt;p&gt;Chengfeng Ren: /* &amp;#039;&amp;#039;&amp;#039;Structure info. of IFNβ-1a&amp;#039;&amp;#039;&amp;#039; */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;Structure load=&#039;Insert PDB code or filename here&#039; size=&#039;500&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;Mouse interferon β 1a&#039; scene=&#039;56/566498/Interferon_beta_1a/1&#039; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;IFN Categories and IFNβ-1a sources&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Interferons&#039;&#039;&#039; (IFNs) are a family of helical cytokines that mediate&lt;br /&gt;
antiviral, antiproliferative, and immune modulatory activities in&lt;br /&gt;
response to biological and chemical stimuli. Two types of IFN are recognized on   &lt;br /&gt;
the basis of their physical and biological properties; type I, which   &lt;br /&gt;
contains the monomeric IFNs-α,-β,-τ, and -ω, and type II, the&lt;br /&gt;
only member of which is the dimeric IFN-γ. Representatives of all&lt;br /&gt;
type I and type II IFNs are found in humans, except for IFN-τ,&lt;br /&gt;
which is found only in ruminant ungulates. There are 12 different human IFNs-α;each one&lt;br /&gt;
comprising a different subtype,although 14 different genes have&lt;br /&gt;
been identified, whereas human IFN-β, IFN-ω, and IFN-γare&lt;br /&gt;
encoded by single genes[1].&lt;br /&gt;
&lt;br /&gt;
Interferon-β has two subtyes, interferon-β-1a and interferon-β-1b. Interferon-β-1a is naturally expressed in numerous cell types in human, including &lt;br /&gt;
fibroblasts, endothelial cells, epithelial cells and various leukocytes, however,Interferon-β-1b is produced in modified E. coli.&lt;br /&gt;
Interferon-β-1a tends to aggregate and form dimers.&amp;lt;scene name=&#039;56/566503/Interferon_dimer/1&#039;&amp;gt;Interferon dimer&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Here is a jpg clearly illustrating IFNs categories.&lt;br /&gt;
[[Image:IFN categories.jpg]]&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;Structure info. of IFNβ-1a&#039;&#039;&#039;==&lt;br /&gt;
IFNβ-1a consisting of 166 amino acids, around 20KDa. It has 5 helixs. There are several &amp;lt;scene name=&#039;56/566503/Important_hydrophobic_residues/1&#039;&amp;gt;hydrophobic residues&amp;lt;/scene&amp;gt;,such as Phe-70, Phe-154, Trp-79, and Trp-143, that are involved in interactions with each other that stabilize the core of the molecule. In addition, residues of the core form several&lt;br /&gt;
hydrogen bonds such as between Gln-10 and Gln-94 and between Ser-118 and Thr-58.&lt;br /&gt;
&amp;lt;scene name=&#039;56/566498/Interferon_beta_1a/1&#039;&amp;gt;Interferon beta 1a&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;IFNβ-1a biological activity and therapeutic effects&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
IFNβ-1a as well as other family of IFNs has a variety of biological activities, inluding antiviral, antiproliferative, and immune modulatory activities in response to biological and chemical stimuli[2]. &lt;br /&gt;
&lt;br /&gt;
IFNβ-1a is mainly used to treat relapsing forms of multiple sclerosis(MS).&lt;br /&gt;
MS is a life-long disease that affects your nervous system &lt;br /&gt;
by destroying the protective covering (myelin) that surrounds&lt;br /&gt;
your nerve fibers.&lt;br /&gt;
The commercial available drug format is [http://http://www.avonex.com/ Avonex].(Please refer to the drug guide before using it)&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;Mechanism of action for IFNβ-1a&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The IFNβreceptor, signaling cascade and gene regulation&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
The IFNβreceptor is composed of 2 required chains—a signaling&lt;br /&gt;
chain,&amp;lt;scene name=&#039;56/566498/Human_ifnar1/1&#039;&amp;gt;IFNAR1&amp;lt;/scene&amp;gt; , and a binding chain, &amp;lt;scene name=&#039;56/566498/Ifnar2/1&#039;&amp;gt;IFNAR2&amp;lt;/scene&amp;gt;. Both IFNAR1 and&lt;br /&gt;
IFNAR2 are constitutively expressed on the surface of virtually all cells. IFNβcan bind to IFNAR2 alone, but can bind to IFNAR1 only in&lt;br /&gt;
the presence of IFNAR2. The strength of IFNβbinding to its&lt;br /&gt;
receptor is much higher when both subunits are present.&lt;br /&gt;
Knockout experiments indicate that both IFNAR1 and IFNAR2 are&lt;br /&gt;
required for IFNβ activity, but it remains uncertain&lt;br /&gt;
whether there are auxiliary receptors or alternative receptor/&lt;br /&gt;
signaling complexes in some cell types.&lt;br /&gt;
The current view of events leading to IFNβbiological activity is&lt;br /&gt;
as follows: 1) IFN binds to the extracellular domain of&lt;br /&gt;
IFNAR2. 2) IFNAR1 then engages with the IFNβ–IFNAR2 complex,&lt;br /&gt;
forming the high-affinity receptor–ligand complex and allowing&lt;br /&gt;
the intracellular domains of the two receptor chains and&lt;br /&gt;
associated proteins to interact. 3) This interaction, which includes&lt;br /&gt;
JAK1 (associated with IFNAR2) and Tyk2 (associated with IFNAR1),&lt;br /&gt;
results in a cascade of phosphorylation events that leads to&lt;br /&gt;
activation of STATS. 4) Activated STATS form a complex with other&lt;br /&gt;
cytoplasmic proteins, which then translocate into the nucleus to&lt;br /&gt;
bind to Interferon Sensitive Response Elements (ISRE), transcriptional control regions which are upstream of many IFN regulated&lt;br /&gt;
genes. 5) This ISRE binding results in transcriptional regulation&lt;br /&gt;
(both induction and inhibition) of &amp;gt;1000 genes.&lt;br /&gt;
Thus, IFN regulates expression of a myriad of genes. While the&lt;br /&gt;
function of some of these genes is clear (e.g. the antiviral product&lt;br /&gt;
MxA), the specific transcripts mediating therapeutic benefit of&lt;br /&gt;
IFNβin MS are unknown. This is, in part, due to the complexity and&lt;br /&gt;
heterogeneity of MS, but also because IFNβis an agonist that can&lt;br /&gt;
induce the expression not only of ISRE regulated genes, but&lt;br /&gt;
through newly expressed transcription factors, can induce or&lt;br /&gt;
inhibit subsequent waves of gene expression. In addition, some&lt;br /&gt;
IFNβregulated proteins, which include cytokines and chemokines,&lt;br /&gt;
can alter the level or function of particular cell populations. The&lt;br /&gt;
resulting multifaceted biological response is in contrast to&lt;br /&gt;
therapies such as monoclonal antibodies that have a much more&lt;br /&gt;
specific molecular target[2-9].&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;Reference&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
[1] R. Arduini, K. Strauch, L. Rukel etal.Characterization of a soluble ternary complex formed&lt;br /&gt;
between human interferon-b-1a and its receptor chains&#039;&#039;Protein Science&#039;&#039; (1999),&#039;&#039;8&#039;&#039;:1867–1877&lt;br /&gt;
&lt;br /&gt;
[2] T. Taniguchi, A. Takaoka, The interferon-alpha/beta system in&lt;br /&gt;
antiviral responses: a multimodal machinery of gene regulation&lt;br /&gt;
by the IRF family of transcription factors, Curr. Opin. Immunol.&lt;br /&gt;
14 (1) (Feb 2002) 111–116.&lt;br /&gt;
&lt;br /&gt;
[3] K. Kasama, J. Utsumi, E. Matsuo-Ogawa, T. Nagahata, Y. Kagawa,&lt;br /&gt;
S. Yamazaki, et al., Pharmacokinetics and biologic activities of&lt;br /&gt;
human native and asialointerferon-beta s, J. Interferon Cytokine&lt;br /&gt;
Res. 15 (5) (May 1995) 407–415.&lt;br /&gt;
&lt;br /&gt;
[4] L. Runkel, W. Meier, R.B. Pepinsky, M. Karpusas, A. Whitty,&lt;br /&gt;
K. Kimball, et al., Structural and functional differences between&lt;br /&gt;
glycosylated and non-glycosylated forms of human&lt;br /&gt;
interferon-beta (IFN-beta), Pharm. Res. 15 (4) (Apr 1998)&lt;br /&gt;
641–649.&lt;br /&gt;
&lt;br /&gt;
[5] R.M. Arduini, K.L. Strauch, L.A. Runkel, M.M. Carlson, X.&lt;br /&gt;
Hronowski, S.F. Foley, et al., Characterization of a soluble&lt;br /&gt;
ternary complex formed between human interferon-beta-1a&lt;br /&gt;
and its receptor chains, Protein Sci. 8 (9) (Sep 1999)&lt;br /&gt;
1867–1877.&lt;br /&gt;
&lt;br /&gt;
[6] G. Uze, G. Schreiber, J. Piehler, S. Pellegrini, The receptor of the&lt;br /&gt;
type I interferon family, Curr. Top. Microbiol. Immunol. 316&lt;br /&gt;
(2007) 71–95.&lt;br /&gt;
&lt;br /&gt;
[7] C.M. Cleary, R.J. Donnelly, J. Soh, T.M. Mariano, S. Pestka,&lt;br /&gt;
Knockout and reconstitution of a functional human type I&lt;br /&gt;
interferon receptor complex, J. Biol. Chem. 269 (29)&lt;br /&gt;
(Jul 22 1994) 18747–18749.&lt;br /&gt;
&lt;br /&gt;
[8] J. Kumaran, O.R. Colamonici, E.N. Fish, Structure–function study&lt;br /&gt;
of the extracellular domain of the human type I interferon&lt;br /&gt;
receptor (IFNAR)-1 subunit, J. Interferon Cytokine Res. 20 (5)&lt;br /&gt;
(May 2000) 479–485.&lt;br /&gt;
&lt;br /&gt;
[9] J. Ghislain, G. Sussman, S. Goelz, L.E. Ling, E.N. Fish, Configuration&lt;br /&gt;
of the interferon-alpha/beta receptor complex determines the&lt;br /&gt;
context of the biological response, J. Biol. Chem. 270 (37)&lt;br /&gt;
(Sep 15 1995) 21785–21792.&lt;/div&gt;</summary>
		<author><name>Chengfeng Ren</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=User:Chengfeng_Ren/IFN_beta_1a&amp;diff=2071915</id>
		<title>User:Chengfeng Ren/IFN beta 1a</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=User:Chengfeng_Ren/IFN_beta_1a&amp;diff=2071915"/>
		<updated>2014-12-03T03:56:43Z</updated>

		<summary type="html">&lt;p&gt;Chengfeng Ren: /* &amp;#039;&amp;#039;&amp;#039;Structure info. of IFNβ-1a&amp;#039;&amp;#039;&amp;#039; */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;Structure load=&#039;Insert PDB code or filename here&#039; size=&#039;500&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;Mouse interferon β 1a&#039; scene=&#039;56/566498/Interferon_beta_1a/1&#039; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;IFN Categories and IFNβ-1a sources&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Interferons&#039;&#039;&#039; (IFNs) are a family of helical cytokines that mediate&lt;br /&gt;
antiviral, antiproliferative, and immune modulatory activities in&lt;br /&gt;
response to biological and chemical stimuli. Two types of IFN are recognized on   &lt;br /&gt;
the basis of their physical and biological properties; type I, which   &lt;br /&gt;
contains the monomeric IFNs-α,-β,-τ, and -ω, and type II, the&lt;br /&gt;
only member of which is the dimeric IFN-γ. Representatives of all&lt;br /&gt;
type I and type II IFNs are found in humans, except for IFN-τ,&lt;br /&gt;
which is found only in ruminant ungulates. There are 12 different human IFNs-α;each one&lt;br /&gt;
comprising a different subtype,although 14 different genes have&lt;br /&gt;
been identified, whereas human IFN-β, IFN-ω, and IFN-γare&lt;br /&gt;
encoded by single genes[1].&lt;br /&gt;
&lt;br /&gt;
Interferon-β has two subtyes, interferon-β-1a and interferon-β-1b. Interferon-β-1a is naturally expressed in numerous cell types in human, including &lt;br /&gt;
fibroblasts, endothelial cells, epithelial cells and various leukocytes, however,Interferon-β-1b is produced in modified E. coli.&lt;br /&gt;
Interferon-β-1a tends to aggregate and form dimers.&amp;lt;scene name=&#039;56/566503/Interferon_dimer/1&#039;&amp;gt;Interferon dimer&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Here is a jpg clearly illustrating IFNs categories.&lt;br /&gt;
[[Image:IFN categories.jpg]]&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;Structure info. of IFNβ-1a&#039;&#039;&#039;==&lt;br /&gt;
IFNβ-1a consisting of 166 amino acids, around 20KDa. It has 5 helixs. There are several&amp;lt;scene name=&#039;56/566503/Important_hydrophobic_residues/1&#039;&amp;gt;hydrophobic residues&amp;lt;/scene&amp;gt;,such as Phe-70, Phe-154, Trp-79, and Trp-143, that are involved in interactions with each other that stabilize the core of the molecule. In addition, residues of the core form several&lt;br /&gt;
hydrogen bonds such as between Gln-10 and Gln-94 and between Ser-118 and Thr-58.&lt;br /&gt;
&amp;lt;scene name=&#039;56/566498/Interferon_beta_1a/1&#039;&amp;gt;Interferon beta 1a&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;IFNβ-1a biological activity and therapeutic effects&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
IFNβ-1a as well as other family of IFNs has a variety of biological activities, inluding antiviral, antiproliferative, and immune modulatory activities in response to biological and chemical stimuli[2]. &lt;br /&gt;
&lt;br /&gt;
IFNβ-1a is mainly used to treat relapsing forms of multiple sclerosis(MS).&lt;br /&gt;
MS is a life-long disease that affects your nervous system &lt;br /&gt;
by destroying the protective covering (myelin) that surrounds&lt;br /&gt;
your nerve fibers.&lt;br /&gt;
The commercial available drug format is [http://http://www.avonex.com/ Avonex].(Please refer to the drug guide before using it)&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;Mechanism of action for IFNβ-1a&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The IFNβreceptor, signaling cascade and gene regulation&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
The IFNβreceptor is composed of 2 required chains—a signaling&lt;br /&gt;
chain,&amp;lt;scene name=&#039;56/566498/Human_ifnar1/1&#039;&amp;gt;IFNAR1&amp;lt;/scene&amp;gt; , and a binding chain, &amp;lt;scene name=&#039;56/566498/Ifnar2/1&#039;&amp;gt;IFNAR2&amp;lt;/scene&amp;gt;. Both IFNAR1 and&lt;br /&gt;
IFNAR2 are constitutively expressed on the surface of virtually all cells. IFNβcan bind to IFNAR2 alone, but can bind to IFNAR1 only in&lt;br /&gt;
the presence of IFNAR2. The strength of IFNβbinding to its&lt;br /&gt;
receptor is much higher when both subunits are present.&lt;br /&gt;
Knockout experiments indicate that both IFNAR1 and IFNAR2 are&lt;br /&gt;
required for IFNβ activity, but it remains uncertain&lt;br /&gt;
whether there are auxiliary receptors or alternative receptor/&lt;br /&gt;
signaling complexes in some cell types.&lt;br /&gt;
The current view of events leading to IFNβbiological activity is&lt;br /&gt;
as follows: 1) IFN binds to the extracellular domain of&lt;br /&gt;
IFNAR2. 2) IFNAR1 then engages with the IFNβ–IFNAR2 complex,&lt;br /&gt;
forming the high-affinity receptor–ligand complex and allowing&lt;br /&gt;
the intracellular domains of the two receptor chains and&lt;br /&gt;
associated proteins to interact. 3) This interaction, which includes&lt;br /&gt;
JAK1 (associated with IFNAR2) and Tyk2 (associated with IFNAR1),&lt;br /&gt;
results in a cascade of phosphorylation events that leads to&lt;br /&gt;
activation of STATS. 4) Activated STATS form a complex with other&lt;br /&gt;
cytoplasmic proteins, which then translocate into the nucleus to&lt;br /&gt;
bind to Interferon Sensitive Response Elements (ISRE), transcriptional control regions which are upstream of many IFN regulated&lt;br /&gt;
genes. 5) This ISRE binding results in transcriptional regulation&lt;br /&gt;
(both induction and inhibition) of &amp;gt;1000 genes.&lt;br /&gt;
Thus, IFN regulates expression of a myriad of genes. While the&lt;br /&gt;
function of some of these genes is clear (e.g. the antiviral product&lt;br /&gt;
MxA), the specific transcripts mediating therapeutic benefit of&lt;br /&gt;
IFNβin MS are unknown. This is, in part, due to the complexity and&lt;br /&gt;
heterogeneity of MS, but also because IFNβis an agonist that can&lt;br /&gt;
induce the expression not only of ISRE regulated genes, but&lt;br /&gt;
through newly expressed transcription factors, can induce or&lt;br /&gt;
inhibit subsequent waves of gene expression. In addition, some&lt;br /&gt;
IFNβregulated proteins, which include cytokines and chemokines,&lt;br /&gt;
can alter the level or function of particular cell populations. The&lt;br /&gt;
resulting multifaceted biological response is in contrast to&lt;br /&gt;
therapies such as monoclonal antibodies that have a much more&lt;br /&gt;
specific molecular target[2-9].&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;Reference&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
[1] R. Arduini, K. Strauch, L. Rukel etal.Characterization of a soluble ternary complex formed&lt;br /&gt;
between human interferon-b-1a and its receptor chains&#039;&#039;Protein Science&#039;&#039; (1999),&#039;&#039;8&#039;&#039;:1867–1877&lt;br /&gt;
&lt;br /&gt;
[2] T. Taniguchi, A. Takaoka, The interferon-alpha/beta system in&lt;br /&gt;
antiviral responses: a multimodal machinery of gene regulation&lt;br /&gt;
by the IRF family of transcription factors, Curr. Opin. Immunol.&lt;br /&gt;
14 (1) (Feb 2002) 111–116.&lt;br /&gt;
&lt;br /&gt;
[3] K. Kasama, J. Utsumi, E. Matsuo-Ogawa, T. Nagahata, Y. Kagawa,&lt;br /&gt;
S. Yamazaki, et al., Pharmacokinetics and biologic activities of&lt;br /&gt;
human native and asialointerferon-beta s, J. Interferon Cytokine&lt;br /&gt;
Res. 15 (5) (May 1995) 407–415.&lt;br /&gt;
&lt;br /&gt;
[4] L. Runkel, W. Meier, R.B. Pepinsky, M. Karpusas, A. Whitty,&lt;br /&gt;
K. Kimball, et al., Structural and functional differences between&lt;br /&gt;
glycosylated and non-glycosylated forms of human&lt;br /&gt;
interferon-beta (IFN-beta), Pharm. Res. 15 (4) (Apr 1998)&lt;br /&gt;
641–649.&lt;br /&gt;
&lt;br /&gt;
[5] R.M. Arduini, K.L. Strauch, L.A. Runkel, M.M. Carlson, X.&lt;br /&gt;
Hronowski, S.F. Foley, et al., Characterization of a soluble&lt;br /&gt;
ternary complex formed between human interferon-beta-1a&lt;br /&gt;
and its receptor chains, Protein Sci. 8 (9) (Sep 1999)&lt;br /&gt;
1867–1877.&lt;br /&gt;
&lt;br /&gt;
[6] G. Uze, G. Schreiber, J. Piehler, S. Pellegrini, The receptor of the&lt;br /&gt;
type I interferon family, Curr. Top. Microbiol. Immunol. 316&lt;br /&gt;
(2007) 71–95.&lt;br /&gt;
&lt;br /&gt;
[7] C.M. Cleary, R.J. Donnelly, J. Soh, T.M. Mariano, S. Pestka,&lt;br /&gt;
Knockout and reconstitution of a functional human type I&lt;br /&gt;
interferon receptor complex, J. Biol. Chem. 269 (29)&lt;br /&gt;
(Jul 22 1994) 18747–18749.&lt;br /&gt;
&lt;br /&gt;
[8] J. Kumaran, O.R. Colamonici, E.N. Fish, Structure–function study&lt;br /&gt;
of the extracellular domain of the human type I interferon&lt;br /&gt;
receptor (IFNAR)-1 subunit, J. Interferon Cytokine Res. 20 (5)&lt;br /&gt;
(May 2000) 479–485.&lt;br /&gt;
&lt;br /&gt;
[9] J. Ghislain, G. Sussman, S. Goelz, L.E. Ling, E.N. Fish, Configuration&lt;br /&gt;
of the interferon-alpha/beta receptor complex determines the&lt;br /&gt;
context of the biological response, J. Biol. Chem. 270 (37)&lt;br /&gt;
(Sep 15 1995) 21785–21792.&lt;/div&gt;</summary>
		<author><name>Chengfeng Ren</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=User:Chengfeng_Ren/IFN_beta_1a&amp;diff=2071914</id>
		<title>User:Chengfeng Ren/IFN beta 1a</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=User:Chengfeng_Ren/IFN_beta_1a&amp;diff=2071914"/>
		<updated>2014-12-03T03:25:50Z</updated>

		<summary type="html">&lt;p&gt;Chengfeng Ren: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;Structure load=&#039;Insert PDB code or filename here&#039; size=&#039;500&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;Mouse interferon β 1a&#039; scene=&#039;56/566498/Interferon_beta_1a/1&#039; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;IFN Categories and IFNβ-1a sources&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Interferons&#039;&#039;&#039; (IFNs) are a family of helical cytokines that mediate&lt;br /&gt;
antiviral, antiproliferative, and immune modulatory activities in&lt;br /&gt;
response to biological and chemical stimuli. Two types of IFN are recognized on   &lt;br /&gt;
the basis of their physical and biological properties; type I, which   &lt;br /&gt;
contains the monomeric IFNs-α,-β,-τ, and -ω, and type II, the&lt;br /&gt;
only member of which is the dimeric IFN-γ. Representatives of all&lt;br /&gt;
type I and type II IFNs are found in humans, except for IFN-τ,&lt;br /&gt;
which is found only in ruminant ungulates. There are 12 different human IFNs-α;each one&lt;br /&gt;
comprising a different subtype,although 14 different genes have&lt;br /&gt;
been identified, whereas human IFN-β, IFN-ω, and IFN-γare&lt;br /&gt;
encoded by single genes[1].&lt;br /&gt;
&lt;br /&gt;
Interferon-β has two subtyes, interferon-β-1a and interferon-β-1b. Interferon-β-1a is naturally expressed in numerous cell types in human, including &lt;br /&gt;
fibroblasts, endothelial cells, epithelial cells and various leukocytes, however,Interferon-β-1b is produced in modified E. coli.&lt;br /&gt;
Interferon-β-1a tends to aggregate and form dimers.&amp;lt;scene name=&#039;56/566503/Interferon_dimer/1&#039;&amp;gt;Interferon dimer&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Here is a jpg clearly illustrating IFNs categories.&lt;br /&gt;
[[Image:IFN categories.jpg]]&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;Structure info. of IFNβ-1a&#039;&#039;&#039;==&lt;br /&gt;
IFNβ-1a consisting of 166 amino acids, around 20KDa. It has 5 helixs. There are several hydrophobic residues,such as Phe-70, Phe-154, Trp-79, and Trp-143, that are involved in interactions with each other that stabilize the core of the molecule. In addition, residues of the core form several&lt;br /&gt;
hydrogen bonds such as between Gln-10 and Gln-94 and between Ser-118 and Thr-58.&lt;br /&gt;
&amp;lt;scene name=&#039;56/566498/Interferon_beta_1a/1&#039;&amp;gt;Interferon beta 1a&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;IFNβ-1a biological activity and therapeutic effects&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
IFNβ-1a as well as other family of IFNs has a variety of biological activities, inluding antiviral, antiproliferative, and immune modulatory activities in response to biological and chemical stimuli[2]. &lt;br /&gt;
&lt;br /&gt;
IFNβ-1a is mainly used to treat relapsing forms of multiple sclerosis(MS).&lt;br /&gt;
MS is a life-long disease that affects your nervous system &lt;br /&gt;
by destroying the protective covering (myelin) that surrounds&lt;br /&gt;
your nerve fibers.&lt;br /&gt;
The commercial available drug format is [http://http://www.avonex.com/ Avonex].(Please refer to the drug guide before using it)&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;Mechanism of action for IFNβ-1a&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The IFNβreceptor, signaling cascade and gene regulation&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
The IFNβreceptor is composed of 2 required chains—a signaling&lt;br /&gt;
chain,&amp;lt;scene name=&#039;56/566498/Human_ifnar1/1&#039;&amp;gt;IFNAR1&amp;lt;/scene&amp;gt; , and a binding chain, &amp;lt;scene name=&#039;56/566498/Ifnar2/1&#039;&amp;gt;IFNAR2&amp;lt;/scene&amp;gt;. Both IFNAR1 and&lt;br /&gt;
IFNAR2 are constitutively expressed on the surface of virtually all cells. IFNβcan bind to IFNAR2 alone, but can bind to IFNAR1 only in&lt;br /&gt;
the presence of IFNAR2. The strength of IFNβbinding to its&lt;br /&gt;
receptor is much higher when both subunits are present.&lt;br /&gt;
Knockout experiments indicate that both IFNAR1 and IFNAR2 are&lt;br /&gt;
required for IFNβ activity, but it remains uncertain&lt;br /&gt;
whether there are auxiliary receptors or alternative receptor/&lt;br /&gt;
signaling complexes in some cell types.&lt;br /&gt;
The current view of events leading to IFNβbiological activity is&lt;br /&gt;
as follows: 1) IFN binds to the extracellular domain of&lt;br /&gt;
IFNAR2. 2) IFNAR1 then engages with the IFNβ–IFNAR2 complex,&lt;br /&gt;
forming the high-affinity receptor–ligand complex and allowing&lt;br /&gt;
the intracellular domains of the two receptor chains and&lt;br /&gt;
associated proteins to interact. 3) This interaction, which includes&lt;br /&gt;
JAK1 (associated with IFNAR2) and Tyk2 (associated with IFNAR1),&lt;br /&gt;
results in a cascade of phosphorylation events that leads to&lt;br /&gt;
activation of STATS. 4) Activated STATS form a complex with other&lt;br /&gt;
cytoplasmic proteins, which then translocate into the nucleus to&lt;br /&gt;
bind to Interferon Sensitive Response Elements (ISRE), transcriptional control regions which are upstream of many IFN regulated&lt;br /&gt;
genes. 5) This ISRE binding results in transcriptional regulation&lt;br /&gt;
(both induction and inhibition) of &amp;gt;1000 genes.&lt;br /&gt;
Thus, IFN regulates expression of a myriad of genes. While the&lt;br /&gt;
function of some of these genes is clear (e.g. the antiviral product&lt;br /&gt;
MxA), the specific transcripts mediating therapeutic benefit of&lt;br /&gt;
IFNβin MS are unknown. This is, in part, due to the complexity and&lt;br /&gt;
heterogeneity of MS, but also because IFNβis an agonist that can&lt;br /&gt;
induce the expression not only of ISRE regulated genes, but&lt;br /&gt;
through newly expressed transcription factors, can induce or&lt;br /&gt;
inhibit subsequent waves of gene expression. In addition, some&lt;br /&gt;
IFNβregulated proteins, which include cytokines and chemokines,&lt;br /&gt;
can alter the level or function of particular cell populations. The&lt;br /&gt;
resulting multifaceted biological response is in contrast to&lt;br /&gt;
therapies such as monoclonal antibodies that have a much more&lt;br /&gt;
specific molecular target[2-9].&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;Reference&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
[1] R. Arduini, K. Strauch, L. Rukel etal.Characterization of a soluble ternary complex formed&lt;br /&gt;
between human interferon-b-1a and its receptor chains&#039;&#039;Protein Science&#039;&#039; (1999),&#039;&#039;8&#039;&#039;:1867–1877&lt;br /&gt;
&lt;br /&gt;
[2] T. Taniguchi, A. Takaoka, The interferon-alpha/beta system in&lt;br /&gt;
antiviral responses: a multimodal machinery of gene regulation&lt;br /&gt;
by the IRF family of transcription factors, Curr. Opin. Immunol.&lt;br /&gt;
14 (1) (Feb 2002) 111–116.&lt;br /&gt;
&lt;br /&gt;
[3] K. Kasama, J. Utsumi, E. Matsuo-Ogawa, T. Nagahata, Y. Kagawa,&lt;br /&gt;
S. Yamazaki, et al., Pharmacokinetics and biologic activities of&lt;br /&gt;
human native and asialointerferon-beta s, J. Interferon Cytokine&lt;br /&gt;
Res. 15 (5) (May 1995) 407–415.&lt;br /&gt;
&lt;br /&gt;
[4] L. Runkel, W. Meier, R.B. Pepinsky, M. Karpusas, A. Whitty,&lt;br /&gt;
K. Kimball, et al., Structural and functional differences between&lt;br /&gt;
glycosylated and non-glycosylated forms of human&lt;br /&gt;
interferon-beta (IFN-beta), Pharm. Res. 15 (4) (Apr 1998)&lt;br /&gt;
641–649.&lt;br /&gt;
&lt;br /&gt;
[5] R.M. Arduini, K.L. Strauch, L.A. Runkel, M.M. Carlson, X.&lt;br /&gt;
Hronowski, S.F. Foley, et al., Characterization of a soluble&lt;br /&gt;
ternary complex formed between human interferon-beta-1a&lt;br /&gt;
and its receptor chains, Protein Sci. 8 (9) (Sep 1999)&lt;br /&gt;
1867–1877.&lt;br /&gt;
&lt;br /&gt;
[6] G. Uze, G. Schreiber, J. Piehler, S. Pellegrini, The receptor of the&lt;br /&gt;
type I interferon family, Curr. Top. Microbiol. Immunol. 316&lt;br /&gt;
(2007) 71–95.&lt;br /&gt;
&lt;br /&gt;
[7] C.M. Cleary, R.J. Donnelly, J. Soh, T.M. Mariano, S. Pestka,&lt;br /&gt;
Knockout and reconstitution of a functional human type I&lt;br /&gt;
interferon receptor complex, J. Biol. Chem. 269 (29)&lt;br /&gt;
(Jul 22 1994) 18747–18749.&lt;br /&gt;
&lt;br /&gt;
[8] J. Kumaran, O.R. Colamonici, E.N. Fish, Structure–function study&lt;br /&gt;
of the extracellular domain of the human type I interferon&lt;br /&gt;
receptor (IFNAR)-1 subunit, J. Interferon Cytokine Res. 20 (5)&lt;br /&gt;
(May 2000) 479–485.&lt;br /&gt;
&lt;br /&gt;
[9] J. Ghislain, G. Sussman, S. Goelz, L.E. Ling, E.N. Fish, Configuration&lt;br /&gt;
of the interferon-alpha/beta receptor complex determines the&lt;br /&gt;
context of the biological response, J. Biol. Chem. 270 (37)&lt;br /&gt;
(Sep 15 1995) 21785–21792.&lt;/div&gt;</summary>
		<author><name>Chengfeng Ren</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=User:Chengfeng_Ren/IFN_beta_1a&amp;diff=2071913</id>
		<title>User:Chengfeng Ren/IFN beta 1a</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=User:Chengfeng_Ren/IFN_beta_1a&amp;diff=2071913"/>
		<updated>2014-12-03T02:21:16Z</updated>

		<summary type="html">&lt;p&gt;Chengfeng Ren: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;Structure load=&#039;Insert PDB code or filename here&#039; size=&#039;500&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;Mouse interferon β 1a&#039; scene=&#039;56/566498/Interferon_beta_1a/1&#039; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;IFN Categories and IFNβ-1a sources&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Interferons&#039;&#039;&#039; (IFNs) are a family of helical cytokines that mediate&lt;br /&gt;
antiviral, antiproliferative, and immune modulatory activities in&lt;br /&gt;
response to biological and chemical stimuli. Two types of IFN are recognized on   &lt;br /&gt;
the basis of their physical and biological properties; type I, which   &lt;br /&gt;
contains the monomeric IFNs-α,-β,-τ, and -ω, and type II, the&lt;br /&gt;
only member of which is the dimeric IFN-γ. Representatives of all&lt;br /&gt;
type I and type II IFNs are found in humans, except for IFN-τ,&lt;br /&gt;
which is found only in ruminant ungulates. There are 12 different human IFNs-α;each one&lt;br /&gt;
comprising a different subtype,although 14 different genes have&lt;br /&gt;
been identified, whereas human IFN-β, IFN-ω, and IFN-γare&lt;br /&gt;
encoded by single genes[1].&lt;br /&gt;
&lt;br /&gt;
Interferon-β has two subtyes, interferon-β-1a and interferon-β-1b. Interferon-β-1a is naturally expressed in numerous cell types in human, including &lt;br /&gt;
fibroblasts, endothelial cells, epithelial cells and various leukocytes, however,Interferon-β-1b is produced in modified E. coli.&lt;br /&gt;
Interferon-β-1a tends to aggregate and form dimers.&amp;lt;scene name=&#039;56/566503/Interferon_dimer/1&#039;&amp;gt;Interferon dimer&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Here is a jpg clearly illustrating IFNs categories.&lt;br /&gt;
[[Image:IFN categories.jpg]]&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;Structure info. of IFNβ-1a&#039;&#039;&#039;==&lt;br /&gt;
IFNβ-1a consisting of 166 amino acids, around 20KDa. It has 5 helixs.&lt;br /&gt;
&amp;lt;scene name=&#039;56/566498/Interferon_beta_1a/1&#039;&amp;gt;Interferon beta 1a&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;IFNβ-1a biological activity and therapeutic effects&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
IFNβ-1a as well as other family of IFNs has a variety of biological activities, inluding antiviral, antiproliferative, and immune modulatory activities in response to biological and chemical stimuli[2]. &lt;br /&gt;
&lt;br /&gt;
IFNβ-1a is mainly used to treat relapsing forms of multiple sclerosis(MS).&lt;br /&gt;
MS is a life-long disease that affects your nervous system &lt;br /&gt;
by destroying the protective covering (myelin) that surrounds&lt;br /&gt;
your nerve fibers.&lt;br /&gt;
The commercial available drug format is [http://http://www.avonex.com/ Avonex].(Please refer to the drug guide before using it)&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;Mechanism of action for IFNβ-1a&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The IFNβreceptor, signaling cascade and gene regulation&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
The IFNβreceptor is composed of 2 required chains—a signaling&lt;br /&gt;
chain,&amp;lt;scene name=&#039;56/566498/Human_ifnar1/1&#039;&amp;gt;IFNAR1&amp;lt;/scene&amp;gt; , and a binding chain, &amp;lt;scene name=&#039;56/566498/Ifnar2/1&#039;&amp;gt;IFNAR2&amp;lt;/scene&amp;gt;. Both IFNAR1 and&lt;br /&gt;
IFNAR2 are constitutively expressed on the surface of virtually all cells. IFNβcan bind to IFNAR2 alone, but can bind to IFNAR1 only in&lt;br /&gt;
the presence of IFNAR2. The strength of IFNβbinding to its&lt;br /&gt;
receptor is much higher when both subunits are present.&lt;br /&gt;
Knockout experiments indicate that both IFNAR1 and IFNAR2 are&lt;br /&gt;
required for IFNβ activity, but it remains uncertain&lt;br /&gt;
whether there are auxiliary receptors or alternative receptor/&lt;br /&gt;
signaling complexes in some cell types.&lt;br /&gt;
The current view of events leading to IFNβbiological activity is&lt;br /&gt;
as follows: 1) IFN binds to the extracellular domain of&lt;br /&gt;
IFNAR2. 2) IFNAR1 then engages with the IFNβ–IFNAR2 complex,&lt;br /&gt;
forming the high-affinity receptor–ligand complex and allowing&lt;br /&gt;
the intracellular domains of the two receptor chains and&lt;br /&gt;
associated proteins to interact. 3) This interaction, which includes&lt;br /&gt;
JAK1 (associated with IFNAR2) and Tyk2 (associated with IFNAR1),&lt;br /&gt;
results in a cascade of phosphorylation events that leads to&lt;br /&gt;
activation of STATS. 4) Activated STATS form a complex with other&lt;br /&gt;
cytoplasmic proteins, which then translocate into the nucleus to&lt;br /&gt;
bind to Interferon Sensitive Response Elements (ISRE), transcriptional control regions which are upstream of many IFN regulated&lt;br /&gt;
genes. 5) This ISRE binding results in transcriptional regulation&lt;br /&gt;
(both induction and inhibition) of &amp;gt;1000 genes.&lt;br /&gt;
Thus, IFN regulates expression of a myriad of genes. While the&lt;br /&gt;
function of some of these genes is clear (e.g. the antiviral product&lt;br /&gt;
MxA), the specific transcripts mediating therapeutic benefit of&lt;br /&gt;
IFNβin MS are unknown. This is, in part, due to the complexity and&lt;br /&gt;
heterogeneity of MS, but also because IFNβis an agonist that can&lt;br /&gt;
induce the expression not only of ISRE regulated genes, but&lt;br /&gt;
through newly expressed transcription factors, can induce or&lt;br /&gt;
inhibit subsequent waves of gene expression. In addition, some&lt;br /&gt;
IFNβregulated proteins, which include cytokines and chemokines,&lt;br /&gt;
can alter the level or function of particular cell populations. The&lt;br /&gt;
resulting multifaceted biological response is in contrast to&lt;br /&gt;
therapies such as monoclonal antibodies that have a much more&lt;br /&gt;
specific molecular target[2-9].&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;Reference&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
[1] R. Arduini, K. Strauch, L. Rukel etal.Characterization of a soluble ternary complex formed&lt;br /&gt;
between human interferon-b-1a and its receptor chains&#039;&#039;Protein Science&#039;&#039; (1999),&#039;&#039;8&#039;&#039;:1867–1877&lt;br /&gt;
&lt;br /&gt;
[2] T. Taniguchi, A. Takaoka, The interferon-alpha/beta system in&lt;br /&gt;
antiviral responses: a multimodal machinery of gene regulation&lt;br /&gt;
by the IRF family of transcription factors, Curr. Opin. Immunol.&lt;br /&gt;
14 (1) (Feb 2002) 111–116.&lt;br /&gt;
&lt;br /&gt;
[3] K. Kasama, J. Utsumi, E. Matsuo-Ogawa, T. Nagahata, Y. Kagawa,&lt;br /&gt;
S. Yamazaki, et al., Pharmacokinetics and biologic activities of&lt;br /&gt;
human native and asialointerferon-beta s, J. Interferon Cytokine&lt;br /&gt;
Res. 15 (5) (May 1995) 407–415.&lt;br /&gt;
&lt;br /&gt;
[4] L. Runkel, W. Meier, R.B. Pepinsky, M. Karpusas, A. Whitty,&lt;br /&gt;
K. Kimball, et al., Structural and functional differences between&lt;br /&gt;
glycosylated and non-glycosylated forms of human&lt;br /&gt;
interferon-beta (IFN-beta), Pharm. Res. 15 (4) (Apr 1998)&lt;br /&gt;
641–649.&lt;br /&gt;
&lt;br /&gt;
[5] R.M. Arduini, K.L. Strauch, L.A. Runkel, M.M. Carlson, X.&lt;br /&gt;
Hronowski, S.F. Foley, et al., Characterization of a soluble&lt;br /&gt;
ternary complex formed between human interferon-beta-1a&lt;br /&gt;
and its receptor chains, Protein Sci. 8 (9) (Sep 1999)&lt;br /&gt;
1867–1877.&lt;br /&gt;
&lt;br /&gt;
[6] G. Uze, G. Schreiber, J. Piehler, S. Pellegrini, The receptor of the&lt;br /&gt;
type I interferon family, Curr. Top. Microbiol. Immunol. 316&lt;br /&gt;
(2007) 71–95.&lt;br /&gt;
&lt;br /&gt;
[7] C.M. Cleary, R.J. Donnelly, J. Soh, T.M. Mariano, S. Pestka,&lt;br /&gt;
Knockout and reconstitution of a functional human type I&lt;br /&gt;
interferon receptor complex, J. Biol. Chem. 269 (29)&lt;br /&gt;
(Jul 22 1994) 18747–18749.&lt;br /&gt;
&lt;br /&gt;
[8] J. Kumaran, O.R. Colamonici, E.N. Fish, Structure–function study&lt;br /&gt;
of the extracellular domain of the human type I interferon&lt;br /&gt;
receptor (IFNAR)-1 subunit, J. Interferon Cytokine Res. 20 (5)&lt;br /&gt;
(May 2000) 479–485.&lt;br /&gt;
&lt;br /&gt;
[9] J. Ghislain, G. Sussman, S. Goelz, L.E. Ling, E.N. Fish, Configuration&lt;br /&gt;
of the interferon-alpha/beta receptor complex determines the&lt;br /&gt;
context of the biological response, J. Biol. Chem. 270 (37)&lt;br /&gt;
(Sep 15 1995) 21785–21792.&lt;/div&gt;</summary>
		<author><name>Chengfeng Ren</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=User:Chengfeng_Ren/IFN_beta_1a&amp;diff=2071756</id>
		<title>User:Chengfeng Ren/IFN beta 1a</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=User:Chengfeng_Ren/IFN_beta_1a&amp;diff=2071756"/>
		<updated>2014-12-01T23:38:48Z</updated>

		<summary type="html">&lt;p&gt;Chengfeng Ren: /* &amp;#039;&amp;#039;&amp;#039;IFN Categories and IFNβ-1a sources&amp;#039;&amp;#039;&amp;#039; */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;Structure load=&#039;Insert PDB code or filename here&#039; size=&#039;500&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;Mouse interferon β 1a&#039; scene=&#039;56/566498/Interferon_beta_1a/1&#039; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;IFN Categories and IFNβ-1a sources&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Interferons&#039;&#039;&#039; (IFNs) are a family of helical cytokines that mediate&lt;br /&gt;
antiviral, antiproliferative, and immune modulatory activities in&lt;br /&gt;
response to biological and chemical stimuli. Two types of IFN are recognized on   &lt;br /&gt;
the basis of their physical and biological properties; type I, which   &lt;br /&gt;
contains the monomeric IFNs-α,-β,-τ, and -ω, and type II, the&lt;br /&gt;
only member of which is the dimeric IFN-γ. Representatives of all&lt;br /&gt;
type I and type II IFNs are found in humans, except for IFN-τ,&lt;br /&gt;
which is found only in ruminant ungulates. There are 12 different human IFNs-α;each one&lt;br /&gt;
comprising a different subtype,although 14 different genes have&lt;br /&gt;
been identified, whereas human IFN-β, IFN-ω, and IFN-γare&lt;br /&gt;
encoded by single genes[1].&lt;br /&gt;
&lt;br /&gt;
Interferon-β has two subtyes, interferon-β-1a and interferon-β-1b. Interferon-β-1a is naturally expressed in numerous cell types in human, including &lt;br /&gt;
fibroblasts, endothelial cells, epithelial cells and various leukocytes, however,Interferon-β-1b is produced in modified E. coli.&lt;br /&gt;
Interferon-β-1a tends to aggregate and form dimers.&amp;lt;Structure load=&#039;1au1 interferon-β-1a dimer&#039; size=&#039;350&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;Insert caption here&#039; scene=&#039;Insert optional scene name here&#039; /&amp;gt; &amp;lt;scene name=&#039;56/566503/Interferon_dimer/1&#039;&amp;gt;TextToBeDisplayed&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Here is a jpg clearly illustrating IFNs categories.&lt;br /&gt;
[[Image:IFN categories.jpg]]&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;Structure info. of IFNβ-1a&#039;&#039;&#039;==&lt;br /&gt;
IFNβ-1a consisting of 166 amino acids, around 20KDa. It has 5 helixs.&lt;br /&gt;
&amp;lt;scene name=&#039;56/566498/Interferon_beta_1a/1&#039;&amp;gt;Interferon beta 1a&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;IFNβ-1a biological activity and therapeutic effects&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
IFNβ-1a as well as other family of IFNs has a variety of biological activities, inluding antiviral, antiproliferative, and immune modulatory activities in response to biological and chemical stimuli[2]. &lt;br /&gt;
&lt;br /&gt;
IFNβ-1a is mainly used to treat relapsing forms of multiple sclerosis(MS).&lt;br /&gt;
MS is a life-long disease that affects your nervous system &lt;br /&gt;
by destroying the protective covering (myelin) that surrounds&lt;br /&gt;
your nerve fibers.&lt;br /&gt;
The commercial available drug format is [http://http://www.avonex.com/ Avonex].(Please refer to the drug guide before using it)&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;Mechanism of action for IFNβ-1a&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The IFNβreceptor, signaling cascade and gene regulation&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
The IFNβreceptor is composed of 2 required chains—a signaling&lt;br /&gt;
chain,&amp;lt;scene name=&#039;56/566498/Human_ifnar1/1&#039;&amp;gt;IFNAR1&amp;lt;/scene&amp;gt; , and a binding chain, &amp;lt;scene name=&#039;56/566498/Ifnar2/1&#039;&amp;gt;IFNAR2&amp;lt;/scene&amp;gt;. Both IFNAR1 and&lt;br /&gt;
IFNAR2 are constitutively expressed on the surface of virtually all cells. IFNβcan bind to IFNAR2 alone, but can bind to IFNAR1 only in&lt;br /&gt;
the presence of IFNAR2. The strength of IFNβbinding to its&lt;br /&gt;
receptor is much higher when both subunits are present.&lt;br /&gt;
Knockout experiments indicate that both IFNAR1 and IFNAR2 are&lt;br /&gt;
required for IFNβ activity, but it remains uncertain&lt;br /&gt;
whether there are auxiliary receptors or alternative receptor/&lt;br /&gt;
signaling complexes in some cell types.&lt;br /&gt;
The current view of events leading to IFNβbiological activity is&lt;br /&gt;
as follows: 1) IFN binds to the extracellular domain of&lt;br /&gt;
IFNAR2. 2) IFNAR1 then engages with the IFNβ–IFNAR2 complex,&lt;br /&gt;
forming the high-affinity receptor–ligand complex and allowing&lt;br /&gt;
the intracellular domains of the two receptor chains and&lt;br /&gt;
associated proteins to interact. 3) This interaction, which includes&lt;br /&gt;
JAK1 (associated with IFNAR2) and Tyk2 (associated with IFNAR1),&lt;br /&gt;
results in a cascade of phosphorylation events that leads to&lt;br /&gt;
activation of STATS. 4) Activated STATS form a complex with other&lt;br /&gt;
cytoplasmic proteins, which then translocate into the nucleus to&lt;br /&gt;
bind to Interferon Sensitive Response Elements (ISRE), transcriptional control regions which are upstream of many IFN regulated&lt;br /&gt;
genes. 5) This ISRE binding results in transcriptional regulation&lt;br /&gt;
(both induction and inhibition) of &amp;gt;1000 genes.&lt;br /&gt;
Thus, IFN regulates expression of a myriad of genes. While the&lt;br /&gt;
function of some of these genes is clear (e.g. the antiviral product&lt;br /&gt;
MxA), the specific transcripts mediating therapeutic benefit of&lt;br /&gt;
IFNβin MS are unknown. This is, in part, due to the complexity and&lt;br /&gt;
heterogeneity of MS, but also because IFNβis an agonist that can&lt;br /&gt;
induce the expression not only of ISRE regulated genes, but&lt;br /&gt;
through newly expressed transcription factors, can induce or&lt;br /&gt;
inhibit subsequent waves of gene expression. In addition, some&lt;br /&gt;
IFNβregulated proteins, which include cytokines and chemokines,&lt;br /&gt;
can alter the level or function of particular cell populations. The&lt;br /&gt;
resulting multifaceted biological response is in contrast to&lt;br /&gt;
therapies such as monoclonal antibodies that have a much more&lt;br /&gt;
specific molecular target[2-9].&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;Reference&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
[1] R. Arduini, K. Strauch, L. Rukel etal.Characterization of a soluble ternary complex formed&lt;br /&gt;
between human interferon-b-1a and its receptor chains&#039;&#039;Protein Science&#039;&#039; (1999),&#039;&#039;8&#039;&#039;:1867–1877&lt;br /&gt;
&lt;br /&gt;
[2] T. Taniguchi, A. Takaoka, The interferon-alpha/beta system in&lt;br /&gt;
antiviral responses: a multimodal machinery of gene regulation&lt;br /&gt;
by the IRF family of transcription factors, Curr. Opin. Immunol.&lt;br /&gt;
14 (1) (Feb 2002) 111–116.&lt;br /&gt;
&lt;br /&gt;
[3] K. Kasama, J. Utsumi, E. Matsuo-Ogawa, T. Nagahata, Y. Kagawa,&lt;br /&gt;
S. Yamazaki, et al., Pharmacokinetics and biologic activities of&lt;br /&gt;
human native and asialointerferon-beta s, J. Interferon Cytokine&lt;br /&gt;
Res. 15 (5) (May 1995) 407–415.&lt;br /&gt;
&lt;br /&gt;
[4] L. Runkel, W. Meier, R.B. Pepinsky, M. Karpusas, A. Whitty,&lt;br /&gt;
K. Kimball, et al., Structural and functional differences between&lt;br /&gt;
glycosylated and non-glycosylated forms of human&lt;br /&gt;
interferon-beta (IFN-beta), Pharm. Res. 15 (4) (Apr 1998)&lt;br /&gt;
641–649.&lt;br /&gt;
&lt;br /&gt;
[5] R.M. Arduini, K.L. Strauch, L.A. Runkel, M.M. Carlson, X.&lt;br /&gt;
Hronowski, S.F. Foley, et al., Characterization of a soluble&lt;br /&gt;
ternary complex formed between human interferon-beta-1a&lt;br /&gt;
and its receptor chains, Protein Sci. 8 (9) (Sep 1999)&lt;br /&gt;
1867–1877.&lt;br /&gt;
&lt;br /&gt;
[6] G. Uze, G. Schreiber, J. Piehler, S. Pellegrini, The receptor of the&lt;br /&gt;
type I interferon family, Curr. Top. Microbiol. Immunol. 316&lt;br /&gt;
(2007) 71–95.&lt;br /&gt;
&lt;br /&gt;
[7] C.M. Cleary, R.J. Donnelly, J. Soh, T.M. Mariano, S. Pestka,&lt;br /&gt;
Knockout and reconstitution of a functional human type I&lt;br /&gt;
interferon receptor complex, J. Biol. Chem. 269 (29)&lt;br /&gt;
(Jul 22 1994) 18747–18749.&lt;br /&gt;
&lt;br /&gt;
[8] J. Kumaran, O.R. Colamonici, E.N. Fish, Structure–function study&lt;br /&gt;
of the extracellular domain of the human type I interferon&lt;br /&gt;
receptor (IFNAR)-1 subunit, J. Interferon Cytokine Res. 20 (5)&lt;br /&gt;
(May 2000) 479–485.&lt;br /&gt;
&lt;br /&gt;
[9] J. Ghislain, G. Sussman, S. Goelz, L.E. Ling, E.N. Fish, Configuration&lt;br /&gt;
of the interferon-alpha/beta receptor complex determines the&lt;br /&gt;
context of the biological response, J. Biol. Chem. 270 (37)&lt;br /&gt;
(Sep 15 1995) 21785–21792.&lt;/div&gt;</summary>
		<author><name>Chengfeng Ren</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Molecular_Playground/Transferrin&amp;diff=2065645</id>
		<title>Molecular Playground/Transferrin</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Molecular_Playground/Transferrin&amp;diff=2065645"/>
		<updated>2014-11-19T18:16:50Z</updated>

		<summary type="html">&lt;p&gt;Chengfeng Ren: /* 3D structures of transferrin */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;Structure load=&#039;2HAU&#039; size=&#039;500&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;Human Se-Met transferrin complex with citrate and glycerol [[2hau]]&#039; scene=&#039;Insert optional scene name here&#039; /&amp;gt;One of the CBI Molecules being studied in the University of Massachusetts Amherst Chemistry-Biology Interface Program at UMass Amherst and on display at the Molecular Playground.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;scene name=&#039;User:Khaja_Muneeruddin/Sandbox_1/Apotf/2&#039;&amp;gt;Human Transferrin (hTf)&amp;lt;/scene&amp;gt; is a 80 KDa bilobal, iron binding glycoprotein found in blood. In Apo hTf (iron free form), N-lobe (brown) and C-lobe (green) bind one ferric ion each to regulate the concentration of free iron in blood and also transport to iron requiring cells.&lt;br /&gt;
&lt;br /&gt;
N-lobe and C-lobe are homologous and contain identical iron binding amino acid residues. Structurally both N-lobe and C-lobe contain two sub domains namely NI and NII, and CI and CII which come together to form a cleft for binding iron. At the &amp;lt;scene name=&#039;User:Khaja_Muneeruddin/Sandbox_1/Nlobe_binding_sites/3&#039;&amp;gt;binding site of N-lobe&amp;lt;/scene&amp;gt; Asp63, Tyr188, Tyr95, His249 and Arg124 are involved in trapping of iron&amp;lt;ref&amp;gt;PMID: 9609685&amp;lt;/ref&amp;gt;. The amino acids involved in trapping of iron at the &amp;lt;scene name=&#039;User:Khaja_Muneeruddin/Sandbox_1/C-lobe_binding_sites/3&#039;&amp;gt;binding site of C-lobe&amp;lt;/scene&amp;gt; include Asp392, Tyr426, Tyr517, His585, Arg456&amp;lt;ref&amp;gt;PMID: 15924420&amp;lt;/ref&amp;gt;. In addition to these amino acids, at both the lobes a carbonate ion also plays an important role in binding iron. At low pH iron is released from N-lobe by protonation of &amp;lt;scene name=&#039;Molecular_Playground/Transferrin/N_lobe_fe_release/2&#039;&amp;gt;Lysines&amp;lt;/scene&amp;gt; 206 and 296 &amp;lt;ref&amp;gt;PMID: 9609685&amp;lt;/ref&amp;gt; and Lys534 and Arg632 in C-lobe.&amp;lt;ref&amp;gt;PMID: 19917294&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
After binding iron N-lobe and C-lobe undergo a conformational change. In ApohTf, N lobe has an &amp;lt;scene name=&#039;User:Khaja_Muneeruddin/Sandbox_1/Opennlobe/2&#039;&amp;gt;open conformation&amp;lt;/scene&amp;gt; and upon binding ferric ion it shows a &amp;lt;scene name=&#039;User:Khaja_Muneeruddin/Sandbox_1/Closed/2&#039;&amp;gt;closed conformation&amp;lt;/scene&amp;gt; characterized by rotation of N-II sub domain by 63°&amp;lt;ref&amp;gt;PMID: 9760232&amp;lt;/ref&amp;gt;. C-lobe also undergo a similar conformational change upon binding ferric ion, however crystal structure information of the C lobe of hTf is limited due to difficulty in production&amp;lt;ref&amp;gt;PMID: 9337853&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
Intracellular delivery of iron by transferrin is carried out by clathrin-dependent receptor-mediated endocytosis. At pH 7.4 diferric human transferrin binds to human transferrin receptor (hTfR). Upon binding, diferric hTf-hTfR is internalized and in the acidic condition of endosome iron is release from diferric hTf-hTfR complex into the cells. Apo hTf-hTfR complex is recycled back to the cell surface and at  pH of cell surface Tf dissociates from the TfR to bind iron again.&amp;lt;ref&amp;gt;PMID: 16271884&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;PMID: 6300904&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;scene name=&#039;User:Khaja_Muneeruddin/Sandbox_1/Apotf/2&#039;&amp;gt;Human Transferrin (hTf)&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Molecular Playground banner: A bilobal protein that binds iron and transport it inside the cell.&lt;br /&gt;
&lt;br /&gt;
==3D structures of transferrin==&lt;br /&gt;
&lt;br /&gt;
[[Transferrin]]&lt;br /&gt;
&lt;br /&gt;
==References==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Chengfeng Ren</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=User:Chengfeng_Ren/IFN_beta_1a&amp;diff=1881136</id>
		<title>User:Chengfeng Ren/IFN beta 1a</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=User:Chengfeng_Ren/IFN_beta_1a&amp;diff=1881136"/>
		<updated>2013-12-26T01:15:06Z</updated>

		<summary type="html">&lt;p&gt;Chengfeng Ren: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;Structure load=&#039;Insert PDB code or filename here&#039; size=&#039;500&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;Insert caption here&#039; scene=&#039;56/566498/Interferon_beta_1a/1&#039; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;IFN Categories and IFNβ-1a sources&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
Interferons (IFNs) are a family of helical cytokines that mediate&lt;br /&gt;
antiviral, antiproliferative, and immune modulatory activities in&lt;br /&gt;
response to biological and chemical stimuli. Two types of IFN are recognized on   &lt;br /&gt;
the basis of their physical and biological properties; type I, which   &lt;br /&gt;
contains the monomeric IFNs-α,-β,-τ, and -ω, and type II, the&lt;br /&gt;
only member of which is the dimeric IFN-γ. Representatives of all&lt;br /&gt;
type I and type II IFNs are found in humans, except for IFN-τ,&lt;br /&gt;
which is found only in ruminant ungulates. There are 12 different human IFNs-α;each one&lt;br /&gt;
comprising a different subtype,although 14 different genes have&lt;br /&gt;
been identified, whereas human IFN-β, IFN-ω, and IFN-γare&lt;br /&gt;
encoded by single genes[1].&lt;br /&gt;
&lt;br /&gt;
Interferon-βhas two subtyes, interferon-β-1a and interferon-β-1b. Interferon-β-1a is naturally expressed in numerous cell types in human, including &lt;br /&gt;
fibroblasts, endothelial cells, epithelial cells and various leukocytes, however,Interferon-β-1b is produced in modified E. coli.&lt;br /&gt;
&lt;br /&gt;
Here is a jpg clearly illustrating IFNs categories.&lt;br /&gt;
[[Image:IFN categories.jpg]]&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;Structure info. of IFNβ-1a&#039;&#039;&#039;==&lt;br /&gt;
IFNβ-1a consisting of 166 amino acids, around 20KDa. It has 5 helixs.&lt;br /&gt;
&amp;lt;scene name=&#039;56/566498/Interferon_beta_1a/1&#039;&amp;gt;Interferon beta 1a&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;IFNβ-1a biological activity and therapeutic effects&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
IFNβ-1a as well as other family of IFNs has a variety of biological activities, inluding antiviral, antiproliferative, and immune modulatory activities in response to biological and chemical stimuli[2]. &lt;br /&gt;
&lt;br /&gt;
IFNβ-1a is mainly used to treat relapsing forms of multiple sclerosis(MS).&lt;br /&gt;
MS is a life-long disease that affects your nervous system &lt;br /&gt;
by destroying the protective covering (myelin) that surrounds&lt;br /&gt;
your nerve fibers.&lt;br /&gt;
The commercial available drug format is [http://http://www.avonex.com/ Avonex].(Please refer to the drug guide before using it)&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;Mechanism of action for IFNβ-1a&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The IFNβreceptor, signaling cascade and gene regulation&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
The IFNβreceptor is composed of 2 required chains—a signaling&lt;br /&gt;
chain,&amp;lt;scene name=&#039;56/566498/Human_ifnar1/1&#039;&amp;gt;IFNAR1&amp;lt;/scene&amp;gt; , and a binding chain, &amp;lt;scene name=&#039;56/566498/Ifnar2/1&#039;&amp;gt;IFNAR2&amp;lt;/scene&amp;gt;. Both IFNAR1 and&lt;br /&gt;
IFNAR2 are constitutively expressed on the surface of virtually all cells. IFNβcan bind to IFNAR2 alone, but can bind to IFNAR1 only in&lt;br /&gt;
the presence of IFNAR2. The strength of IFNβbinding to its&lt;br /&gt;
receptor is much higher when both subunits are present.&lt;br /&gt;
Knockout experiments indicate that both IFNAR1 and IFNAR2 are&lt;br /&gt;
required for IFNβ activity, but it remains uncertain&lt;br /&gt;
whether there are auxiliary receptors or alternative receptor/&lt;br /&gt;
signaling complexes in some cell types.&lt;br /&gt;
The current view of events leading to IFNβbiological activity is&lt;br /&gt;
as follows: 1) IFN binds to the extracellular domain of&lt;br /&gt;
IFNAR2. 2) IFNAR1 then engages with the IFNβ–IFNAR2 complex,&lt;br /&gt;
forming the high-affinity receptor–ligand complex and allowing&lt;br /&gt;
the intracellular domains of the two receptor chains and&lt;br /&gt;
associated proteins to interact. 3) This interaction, which includes&lt;br /&gt;
JAK1 (associated with IFNAR2) and Tyk2 (associated with IFNAR1),&lt;br /&gt;
results in a cascade of phosphorylation events that leads to&lt;br /&gt;
activation of STATS. 4) Activated STATS form a complex with other&lt;br /&gt;
cytoplasmic proteins, which then translocate into the nucleus to&lt;br /&gt;
bind to Interferon Sensitive Response Elements (ISRE), transcriptional control regions which are upstream of many IFN regulated&lt;br /&gt;
genes. 5) This ISRE binding results in transcriptional regulation&lt;br /&gt;
(both induction and inhibition) of &amp;gt;1000 genes.&lt;br /&gt;
Thus, IFN regulates expression of a myriad of genes. While the&lt;br /&gt;
function of some of these genes is clear (e.g. the antiviral product&lt;br /&gt;
MxA), the specific transcripts mediating therapeutic benefit of&lt;br /&gt;
IFNβin MS are unknown. This is, in part, due to the complexity and&lt;br /&gt;
heterogeneity of MS, but also because IFNβis an agonist that can&lt;br /&gt;
induce the expression not only of ISRE regulated genes, but&lt;br /&gt;
through newly expressed transcription factors, can induce or&lt;br /&gt;
inhibit subsequent waves of gene expression. In addition, some&lt;br /&gt;
IFNβregulated proteins, which include cytokines and chemokines,&lt;br /&gt;
can alter the level or function of particular cell populations. The&lt;br /&gt;
resulting multifaceted biological response is in contrast to&lt;br /&gt;
therapies such as monoclonal antibodies that have a much more&lt;br /&gt;
specific molecular target[2-9].&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;Reference&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
[1] R. Arduini, K. Strauch, L. Rukel etal.Characterization of a soluble ternary complex formed&lt;br /&gt;
between human interferon-b-1a and its receptor chains&#039;&#039;Protein Science&#039;&#039; (1999),&#039;&#039;8&#039;&#039;:1867–1877&lt;br /&gt;
&lt;br /&gt;
[2] T. Taniguchi, A. Takaoka, The interferon-alpha/beta system in&lt;br /&gt;
antiviral responses: a multimodal machinery of gene regulation&lt;br /&gt;
by the IRF family of transcription factors, Curr. Opin. Immunol.&lt;br /&gt;
14 (1) (Feb 2002) 111–116.&lt;br /&gt;
&lt;br /&gt;
[3] K. Kasama, J. Utsumi, E. Matsuo-Ogawa, T. Nagahata, Y. Kagawa,&lt;br /&gt;
S. Yamazaki, et al., Pharmacokinetics and biologic activities of&lt;br /&gt;
human native and asialointerferon-beta s, J. Interferon Cytokine&lt;br /&gt;
Res. 15 (5) (May 1995) 407–415.&lt;br /&gt;
&lt;br /&gt;
[4] L. Runkel, W. Meier, R.B. Pepinsky, M. Karpusas, A. Whitty,&lt;br /&gt;
K. Kimball, et al., Structural and functional differences between&lt;br /&gt;
glycosylated and non-glycosylated forms of human&lt;br /&gt;
interferon-beta (IFN-beta), Pharm. Res. 15 (4) (Apr 1998)&lt;br /&gt;
641–649.&lt;br /&gt;
&lt;br /&gt;
[5] R.M. Arduini, K.L. Strauch, L.A. Runkel, M.M. Carlson, X.&lt;br /&gt;
Hronowski, S.F. Foley, et al., Characterization of a soluble&lt;br /&gt;
ternary complex formed between human interferon-beta-1a&lt;br /&gt;
and its receptor chains, Protein Sci. 8 (9) (Sep 1999)&lt;br /&gt;
1867–1877.&lt;br /&gt;
&lt;br /&gt;
[6] G. Uze, G. Schreiber, J. Piehler, S. Pellegrini, The receptor of the&lt;br /&gt;
type I interferon family, Curr. Top. Microbiol. Immunol. 316&lt;br /&gt;
(2007) 71–95.&lt;br /&gt;
&lt;br /&gt;
[7] C.M. Cleary, R.J. Donnelly, J. Soh, T.M. Mariano, S. Pestka,&lt;br /&gt;
Knockout and reconstitution of a functional human type I&lt;br /&gt;
interferon receptor complex, J. Biol. Chem. 269 (29)&lt;br /&gt;
(Jul 22 1994) 18747–18749.&lt;br /&gt;
&lt;br /&gt;
[8] J. Kumaran, O.R. Colamonici, E.N. Fish, Structure–function study&lt;br /&gt;
of the extracellular domain of the human type I interferon&lt;br /&gt;
receptor (IFNAR)-1 subunit, J. Interferon Cytokine Res. 20 (5)&lt;br /&gt;
(May 2000) 479–485.&lt;br /&gt;
&lt;br /&gt;
[9] J. Ghislain, G. Sussman, S. Goelz, L.E. Ling, E.N. Fish, Configuration&lt;br /&gt;
of the interferon-alpha/beta receptor complex determines the&lt;br /&gt;
context of the biological response, J. Biol. Chem. 270 (37)&lt;br /&gt;
(Sep 15 1995) 21785–21792.&lt;/div&gt;</summary>
		<author><name>Chengfeng Ren</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Chengfeng_Ren/Sandbox1&amp;diff=1881135</id>
		<title>Chengfeng Ren/Sandbox1</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Chengfeng_Ren/Sandbox1&amp;diff=1881135"/>
		<updated>2013-12-26T01:12:51Z</updated>

		<summary type="html">&lt;p&gt;Chengfeng Ren: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;Structure load=&#039;Insert PDB code or filename here&#039; size=&#039;500&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;Insert caption here&#039; scene=&#039;56/566498/Interferon_beta_1a/1&#039; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;IFN Categories and IFNβ-1a sources&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
Interferons (IFNs) are a family of helical cytokines that mediate&lt;br /&gt;
antiviral, antiproliferative, and immune modulatory activities in&lt;br /&gt;
response to biological and chemical stimuli. Two types of IFN are recognized on   &lt;br /&gt;
the basis of their physical and biological properties; type I, which   &lt;br /&gt;
contains the monomeric IFNs-α,-β,-τ, and -ω, and type II, the&lt;br /&gt;
only member of which is the dimeric IFN-γ. Representatives of all&lt;br /&gt;
type I and type II IFNs are found in humans, except for IFN-τ,&lt;br /&gt;
which is found only in ruminant ungulates. There are 12 different human IFNs-α;each one&lt;br /&gt;
comprising a different subtype,although 14 different genes have&lt;br /&gt;
been identified, whereas human IFN-β, IFN-ω, and IFN-γare&lt;br /&gt;
encoded by single genes[1].&lt;br /&gt;
&lt;br /&gt;
Interferon-βhas two subtyes, interferon-β-1a and interferon-β-1b. Interferon-β-1a is naturally expressed in numerous cell types in human, including &lt;br /&gt;
fibroblasts, endothelial cells, epithelial cells and various leukocytes, however,Interferon-β-1b is produced in modified E. coli.&lt;br /&gt;
&lt;br /&gt;
Here is a jpg clearly illustrating IFNs categories.&lt;br /&gt;
[[Image:IFN categories.jpg]]&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;Structure info. of IFNβ-1a&#039;&#039;&#039;==&lt;br /&gt;
IFNβ-1a consisting of 166 amino acids, around 20KDa. It has 5 helixs.&lt;br /&gt;
&amp;lt;scene name=&#039;56/566498/Interferon_beta_1a/1&#039;&amp;gt;Interferon beta 1a&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;IFNβ-1a biological activity and therapeutic effects&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
IFNβ-1a as well as other family of IFNs has a variety of biological activities, inluding antiviral, antiproliferative, and immune modulatory activities in response to biological and chemical stimuli[2]. &lt;br /&gt;
&lt;br /&gt;
IFNβ-1a is mainly used to treat relapsing forms of multiple sclerosis(MS).&lt;br /&gt;
MS is a life-long disease that affects your nervous system &lt;br /&gt;
by destroying the protective covering (myelin) that surrounds&lt;br /&gt;
your nerve fibers.&lt;br /&gt;
The commercial available drug format is [http://http://www.avonex.com/ Avonex].(Please refer to the drug guide before using it)&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;Mechanism of action for IFNβ-1a&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The IFNβreceptor, signaling cascade and gene regulation&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
The IFNβreceptor is composed of 2 required chains—a signaling&lt;br /&gt;
chain,&amp;lt;scene name=&#039;56/566498/Human_ifnar1/1&#039;&amp;gt;IFNAR1&amp;lt;/scene&amp;gt; , and a binding chain, &amp;lt;scene name=&#039;56/566498/Ifnar2/1&#039;&amp;gt;IFNAR2&amp;lt;/scene&amp;gt;. Both IFNAR1 and&lt;br /&gt;
IFNAR2 are constitutively expressed on the surface of virtually all cells. IFNβcan bind to IFNAR2 alone, but can bind to IFNAR1 only in&lt;br /&gt;
the presence of IFNAR2. The strength of IFNβbinding to its&lt;br /&gt;
receptor is much higher when both subunits are present.&lt;br /&gt;
Knockout experiments indicate that both IFNAR1 and IFNAR2 are&lt;br /&gt;
required for IFNβ activity, but it remains uncertain&lt;br /&gt;
whether there are auxiliary receptors or alternative receptor/&lt;br /&gt;
signaling complexes in some cell types.&lt;br /&gt;
The current view of events leading to IFNβbiological activity is&lt;br /&gt;
as follows: 1) IFN binds to the extracellular domain of&lt;br /&gt;
IFNAR2. 2) IFNAR1 then engages with the IFNβ–IFNAR2 complex,&lt;br /&gt;
forming the high-affinity receptor–ligand complex and allowing&lt;br /&gt;
the intracellular domains of the two receptor chains and&lt;br /&gt;
associated proteins to interact. 3) This interaction, which includes&lt;br /&gt;
JAK1 (associated with IFNAR2) and Tyk2 (associated with IFNAR1),&lt;br /&gt;
results in a cascade of phosphorylation events that leads to&lt;br /&gt;
activation of STATS. 4) Activated STATS form a complex with other&lt;br /&gt;
cytoplasmic proteins, which then translocate into the nucleus to&lt;br /&gt;
bind to Interferon Sensitive Response Elements (ISRE), transcriptional control regions which are upstream of many IFN regulated&lt;br /&gt;
genes. 5) This ISRE binding results in transcriptional regulation&lt;br /&gt;
(both induction and inhibition) of &amp;gt;1000 genes.&lt;br /&gt;
Thus, IFN regulates expression of a myriad of genes. While the&lt;br /&gt;
function of some of these genes is clear (e.g. the antiviral product&lt;br /&gt;
MxA), the specific transcripts mediating therapeutic benefit of&lt;br /&gt;
IFNβin MS are unknown. This is, in part, due to the complexity and&lt;br /&gt;
heterogeneity of MS, but also because IFNβis an agonist that can&lt;br /&gt;
induce the expression not only of ISRE regulated genes, but&lt;br /&gt;
through newly expressed transcription factors, can induce or&lt;br /&gt;
inhibit subsequent waves of gene expression. In addition, some&lt;br /&gt;
IFNβregulated proteins, which include cytokines and chemokines,&lt;br /&gt;
can alter the level or function of particular cell populations. The&lt;br /&gt;
resulting multifaceted biological response is in contrast to&lt;br /&gt;
therapies such as monoclonal antibodies that have a much more&lt;br /&gt;
specific molecular target[2-9].&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;Reference&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
[1] R. Arduini, K. Strauch, L. Rukel etal.Characterization of a soluble ternary complex formed&lt;br /&gt;
between human interferon-b-1a and its receptor chains&#039;&#039;Protein Science&#039;&#039; (1999),&#039;&#039;8&#039;&#039;:1867–1877&lt;br /&gt;
&lt;br /&gt;
[2] T. Taniguchi, A. Takaoka, The interferon-alpha/beta system in&lt;br /&gt;
antiviral responses: a multimodal machinery of gene regulation&lt;br /&gt;
by the IRF family of transcription factors, Curr. Opin. Immunol.&lt;br /&gt;
14 (1) (Feb 2002) 111–116.&lt;br /&gt;
&lt;br /&gt;
[3] K. Kasama, J. Utsumi, E. Matsuo-Ogawa, T. Nagahata, Y. Kagawa,&lt;br /&gt;
S. Yamazaki, et al., Pharmacokinetics and biologic activities of&lt;br /&gt;
human native and asialointerferon-beta s, J. Interferon Cytokine&lt;br /&gt;
Res. 15 (5) (May 1995) 407–415.&lt;br /&gt;
&lt;br /&gt;
[4] L. Runkel, W. Meier, R.B. Pepinsky, M. Karpusas, A. Whitty,&lt;br /&gt;
K. Kimball, et al., Structural and functional differences between&lt;br /&gt;
glycosylated and non-glycosylated forms of human&lt;br /&gt;
interferon-beta (IFN-beta), Pharm. Res. 15 (4) (Apr 1998)&lt;br /&gt;
641–649.&lt;br /&gt;
&lt;br /&gt;
[5] R.M. Arduini, K.L. Strauch, L.A. Runkel, M.M. Carlson, X.&lt;br /&gt;
Hronowski, S.F. Foley, et al., Characterization of a soluble&lt;br /&gt;
ternary complex formed between human interferon-beta-1a&lt;br /&gt;
and its receptor chains, Protein Sci. 8 (9) (Sep 1999)&lt;br /&gt;
1867–1877.&lt;br /&gt;
&lt;br /&gt;
[6] G. Uze, G. Schreiber, J. Piehler, S. Pellegrini, The receptor of the&lt;br /&gt;
type I interferon family, Curr. Top. Microbiol. Immunol. 316&lt;br /&gt;
(2007) 71–95.&lt;br /&gt;
&lt;br /&gt;
[7] C.M. Cleary, R.J. Donnelly, J. Soh, T.M. Mariano, S. Pestka,&lt;br /&gt;
Knockout and reconstitution of a functional human type I&lt;br /&gt;
interferon receptor complex, J. Biol. Chem. 269 (29)&lt;br /&gt;
(Jul 22 1994) 18747–18749.&lt;br /&gt;
&lt;br /&gt;
[8] J. Kumaran, O.R. Colamonici, E.N. Fish, Structure–function study&lt;br /&gt;
of the extracellular domain of the human type I interferon&lt;br /&gt;
receptor (IFNAR)-1 subunit, J. Interferon Cytokine Res. 20 (5)&lt;br /&gt;
(May 2000) 479–485.&lt;br /&gt;
&lt;br /&gt;
[9] J. Ghislain, G. Sussman, S. Goelz, L.E. Ling, E.N. Fish, Configuration&lt;br /&gt;
of the interferon-alpha/beta receptor complex determines the&lt;br /&gt;
context of the biological response, J. Biol. Chem. 270 (37)&lt;br /&gt;
(Sep 15 1995) 21785–21792.&lt;/div&gt;</summary>
		<author><name>Chengfeng Ren</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Chengfeng_Ren/Sandbox1&amp;diff=1881134</id>
		<title>Chengfeng Ren/Sandbox1</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Chengfeng_Ren/Sandbox1&amp;diff=1881134"/>
		<updated>2013-12-26T01:05:12Z</updated>

		<summary type="html">&lt;p&gt;Chengfeng Ren: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;==&#039;&#039;&#039;IFN Categories and IFNβ-1a sources&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
&amp;lt;Structure load=&#039;1au1&#039; size=&#039;500&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;1au1 inferferon&#039; scene=&#039;Interferon beta 1a dimer&#039; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Interferons (IFNs) are a family of helical cytokines that mediate&lt;br /&gt;
antiviral, antiproliferative, and immune modulatory activities in&lt;br /&gt;
response to biological and chemical stimuli. Two types of IFN are recognized on   &lt;br /&gt;
the basis of their physical and biological properties; type I, which   &lt;br /&gt;
contains the monomeric IFNs-α,-β,-τ, and -ω, and type II, the&lt;br /&gt;
only member of which is the dimeric IFN-γ. Representatives of all&lt;br /&gt;
type I and type II IFNs are found in humans, except for IFN-τ,&lt;br /&gt;
which is found only in ruminant ungulates. There are 12 different human IFNs-α;each one&lt;br /&gt;
comprising a different subtype,although 14 different genes have&lt;br /&gt;
been identified, whereas human IFN-β, IFN-ω, and IFN-γare&lt;br /&gt;
encoded by single genes[1].&lt;br /&gt;
&lt;br /&gt;
Interferon-βhas two subtyes, interferon-β-1a and interferon-β-1b. Interferon-β-1a is naturally expressed in numerous cell types in human, including &lt;br /&gt;
fibroblasts, endothelial cells, epithelial cells and various leukocytes, however,Interferon-β-1b is produced in modified E. coli.&lt;br /&gt;
&lt;br /&gt;
Here is a jpg clearly illustrating IFNs categories.&lt;br /&gt;
[[Image:IFN categories.jpg]]&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;Structure info. of IFNβ-1a&#039;&#039;&#039;==&lt;br /&gt;
IFNβ-1a consisting of 166 amino acids, around 20KDa. It has 5 helixs.&lt;br /&gt;
&amp;lt;scene name=&#039;56/566498/Interferon_beta_1a/1&#039;&amp;gt;Interferon beta 1a&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;IFNβ-1a biological activity and therapeutic effects&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
IFNβ-1a as well as other family of IFNs has a variety of biological activities, inluding antiviral, antiproliferative, and immune modulatory activities in response to biological and chemical stimuli[2]. &lt;br /&gt;
&lt;br /&gt;
IFNβ-1a is mainly used to treat relapsing forms of multiple sclerosis(MS).&lt;br /&gt;
MS is a life-long disease that affects your nervous system &lt;br /&gt;
by destroying the protective covering (myelin) that surrounds&lt;br /&gt;
your nerve fibers.&lt;br /&gt;
The commercial available drug format is [http://http://www.avonex.com/ Avonex].(Please refer to the drug guide before using it)&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;Mechanism of action for IFNβ-1a&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The IFNβreceptor, signaling cascade and gene regulation&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
The IFNβreceptor is composed of 2 required chains—a signaling&lt;br /&gt;
chain,&amp;lt;scene name=&#039;56/566498/Human_ifnar1/1&#039;&amp;gt;IFNAR1&amp;lt;/scene&amp;gt; , and a binding chain, &amp;lt;scene name=&#039;56/566498/Ifnar2/1&#039;&amp;gt;IFNAR2&amp;lt;/scene&amp;gt;. Both IFNAR1 and&lt;br /&gt;
IFNAR2 are constitutively expressed on the surface of virtually all cells. IFNβcan bind to IFNAR2 alone, but can bind to IFNAR1 only in&lt;br /&gt;
the presence of IFNAR2. The strength of IFNβbinding to its&lt;br /&gt;
receptor is much higher when both subunits are present.&lt;br /&gt;
Knockout experiments indicate that both IFNAR1 and IFNAR2 are&lt;br /&gt;
required for IFNβ activity, but it remains uncertain&lt;br /&gt;
whether there are auxiliary receptors or alternative receptor/&lt;br /&gt;
signaling complexes in some cell types.&lt;br /&gt;
The current view of events leading to IFNβbiological activity is&lt;br /&gt;
as follows: 1) IFN binds to the extracellular domain of&lt;br /&gt;
IFNAR2. 2) IFNAR1 then engages with the IFNβ–IFNAR2 complex,&lt;br /&gt;
forming the high-affinity receptor–ligand complex and allowing&lt;br /&gt;
the intracellular domains of the two receptor chains and&lt;br /&gt;
associated proteins to interact. 3) This interaction, which includes&lt;br /&gt;
JAK1 (associated with IFNAR2) and Tyk2 (associated with IFNAR1),&lt;br /&gt;
results in a cascade of phosphorylation events that leads to&lt;br /&gt;
activation of STATS. 4) Activated STATS form a complex with other&lt;br /&gt;
cytoplasmic proteins, which then translocate into the nucleus to&lt;br /&gt;
bind to Interferon Sensitive Response Elements (ISRE), transcriptional control regions which are upstream of many IFN regulated&lt;br /&gt;
genes. 5) This ISRE binding results in transcriptional regulation&lt;br /&gt;
(both induction and inhibition) of &amp;gt;1000 genes.&lt;br /&gt;
Thus, IFN regulates expression of a myriad of genes. While the&lt;br /&gt;
function of some of these genes is clear (e.g. the antiviral product&lt;br /&gt;
MxA), the specific transcripts mediating therapeutic benefit of&lt;br /&gt;
IFNβin MS are unknown. This is, in part, due to the complexity and&lt;br /&gt;
heterogeneity of MS, but also because IFNβis an agonist that can&lt;br /&gt;
induce the expression not only of ISRE regulated genes, but&lt;br /&gt;
through newly expressed transcription factors, can induce or&lt;br /&gt;
inhibit subsequent waves of gene expression. In addition, some&lt;br /&gt;
IFNβregulated proteins, which include cytokines and chemokines,&lt;br /&gt;
can alter the level or function of particular cell populations. The&lt;br /&gt;
resulting multifaceted biological response is in contrast to&lt;br /&gt;
therapies such as monoclonal antibodies that have a much more&lt;br /&gt;
specific molecular target[2-9].&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;Reference&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
[1] R. Arduini, K. Strauch, L. Rukel etal.Characterization of a soluble ternary complex formed&lt;br /&gt;
between human interferon-b-1a and its receptor chains&#039;&#039;Protein Science&#039;&#039; (1999),&#039;&#039;8&#039;&#039;:1867–1877&lt;br /&gt;
&lt;br /&gt;
[2] T. Taniguchi, A. Takaoka, The interferon-alpha/beta system in&lt;br /&gt;
antiviral responses: a multimodal machinery of gene regulation&lt;br /&gt;
by the IRF family of transcription factors, Curr. Opin. Immunol.&lt;br /&gt;
14 (1) (Feb 2002) 111–116.&lt;br /&gt;
&lt;br /&gt;
[3] K. Kasama, J. Utsumi, E. Matsuo-Ogawa, T. Nagahata, Y. Kagawa,&lt;br /&gt;
S. Yamazaki, et al., Pharmacokinetics and biologic activities of&lt;br /&gt;
human native and asialointerferon-beta s, J. Interferon Cytokine&lt;br /&gt;
Res. 15 (5) (May 1995) 407–415.&lt;br /&gt;
&lt;br /&gt;
[4] L. Runkel, W. Meier, R.B. Pepinsky, M. Karpusas, A. Whitty,&lt;br /&gt;
K. Kimball, et al., Structural and functional differences between&lt;br /&gt;
glycosylated and non-glycosylated forms of human&lt;br /&gt;
interferon-beta (IFN-beta), Pharm. Res. 15 (4) (Apr 1998)&lt;br /&gt;
641–649.&lt;br /&gt;
&lt;br /&gt;
[5] R.M. Arduini, K.L. Strauch, L.A. Runkel, M.M. Carlson, X.&lt;br /&gt;
Hronowski, S.F. Foley, et al., Characterization of a soluble&lt;br /&gt;
ternary complex formed between human interferon-beta-1a&lt;br /&gt;
and its receptor chains, Protein Sci. 8 (9) (Sep 1999)&lt;br /&gt;
1867–1877.&lt;br /&gt;
&lt;br /&gt;
[6] G. Uze, G. Schreiber, J. Piehler, S. Pellegrini, The receptor of the&lt;br /&gt;
type I interferon family, Curr. Top. Microbiol. Immunol. 316&lt;br /&gt;
(2007) 71–95.&lt;br /&gt;
&lt;br /&gt;
[7] C.M. Cleary, R.J. Donnelly, J. Soh, T.M. Mariano, S. Pestka,&lt;br /&gt;
Knockout and reconstitution of a functional human type I&lt;br /&gt;
interferon receptor complex, J. Biol. Chem. 269 (29)&lt;br /&gt;
(Jul 22 1994) 18747–18749.&lt;br /&gt;
&lt;br /&gt;
[8] J. Kumaran, O.R. Colamonici, E.N. Fish, Structure–function study&lt;br /&gt;
of the extracellular domain of the human type I interferon&lt;br /&gt;
receptor (IFNAR)-1 subunit, J. Interferon Cytokine Res. 20 (5)&lt;br /&gt;
(May 2000) 479–485.&lt;br /&gt;
&lt;br /&gt;
[9] J. Ghislain, G. Sussman, S. Goelz, L.E. Ling, E.N. Fish, Configuration&lt;br /&gt;
of the interferon-alpha/beta receptor complex determines the&lt;br /&gt;
context of the biological response, J. Biol. Chem. 270 (37)&lt;br /&gt;
(Sep 15 1995) 21785–21792.&lt;/div&gt;</summary>
		<author><name>Chengfeng Ren</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Chengfeng_Ren/Sandbox1&amp;diff=1881133</id>
		<title>Chengfeng Ren/Sandbox1</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Chengfeng_Ren/Sandbox1&amp;diff=1881133"/>
		<updated>2013-12-26T00:57:28Z</updated>

		<summary type="html">&lt;p&gt;Chengfeng Ren: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;==&#039;&#039;&#039;IFN Categories and IFNβ-1a sources&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
Interferons (IFNs) are a family of helical cytokines that mediate&lt;br /&gt;
antiviral, antiproliferative, and immune modulatory activities in&lt;br /&gt;
response to biological and chemical stimuli. Two types of IFN are recognized on   &lt;br /&gt;
the basis of their physical and biological properties; type I, which   &lt;br /&gt;
contains the monomeric IFNs-α,-β,-τ, and -ω, and type II, the&lt;br /&gt;
only member of which is the dimeric IFN-γ. Representatives of all&lt;br /&gt;
type I and type II IFNs are found in humans, except for IFN-τ,&lt;br /&gt;
which is found only in ruminant ungulates. There are 12 different human IFNs-α;each one&lt;br /&gt;
comprising a different subtype,although 14 different genes have&lt;br /&gt;
been identified, whereas human IFN-β, IFN-ω, and IFN-γare&lt;br /&gt;
encoded by single genes[1].&lt;br /&gt;
&lt;br /&gt;
Interferon-βhas two subtyes, interferon-β-1a and interferon-β-1b. Interferon-β-1a is naturally expressed in numerous cell types in human, including &lt;br /&gt;
fibroblasts, endothelial cells, epithelial cells and various leukocytes, however,Interferon-β-1b is produced in modified E. coli.&lt;br /&gt;
&lt;br /&gt;
Here is a jpg clearly illustrating IFNs categories.&lt;br /&gt;
[[Image:IFN categories.jpg]]&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;Structure info. of IFNβ-1a&#039;&#039;&#039;==&lt;br /&gt;
IFNβ-1a consisting of 166 amino acids, around 20KDa. It has 5 helixs.&lt;br /&gt;
&amp;lt;Structure load=&#039;1au1&#039; size=&#039;500&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;IFN structure from PDB&#039; scene=&#039;IFN scene_structure&#039; /&amp;gt;&lt;br /&gt;
&amp;lt;scene name=&#039;56/566498/Interferon_beta_1a/1&#039;&amp;gt;Interferon beta 1a&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;IFNβ-1a biological activity and therapeutic effects&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
IFNβ-1a as well as other family of IFNs has a variety of biological activities, inluding antiviral, antiproliferative, and immune modulatory activities in response to biological and chemical stimuli[2]. &lt;br /&gt;
&lt;br /&gt;
IFNβ-1a is mainly used to treat relapsing forms of multiple sclerosis(MS).&lt;br /&gt;
MS is a life-long disease that affects your nervous system &lt;br /&gt;
by destroying the protective covering (myelin) that surrounds&lt;br /&gt;
your nerve fibers.&lt;br /&gt;
The commercial available drug format is [http://http://www.avonex.com/ Avonex].(Please refer to the drug guide before using it)&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;Mechanism of action for IFNβ-1a&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The IFNβreceptor, signaling cascade and gene regulation&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
The IFNβreceptor is composed of 2 required chains—a signaling&lt;br /&gt;
chain,&amp;lt;scene name=&#039;56/566498/Human_ifnar1/1&#039;&amp;gt;IFNAR1&amp;lt;/scene&amp;gt; , and a binding chain, &amp;lt;scene name=&#039;56/566498/Ifnar2/1&#039;&amp;gt;IFNAR2&amp;lt;/scene&amp;gt;. Both IFNAR1 and&lt;br /&gt;
IFNAR2 are constitutively expressed on the surface of virtually all cells. IFNβcan bind to IFNAR2 alone, but can bind to IFNAR1 only in&lt;br /&gt;
the presence of IFNAR2. The strength of IFNβbinding to its&lt;br /&gt;
receptor is much higher when both subunits are present.&lt;br /&gt;
Knockout experiments indicate that both IFNAR1 and IFNAR2 are&lt;br /&gt;
required for IFNβ activity, but it remains uncertain&lt;br /&gt;
whether there are auxiliary receptors or alternative receptor/&lt;br /&gt;
signaling complexes in some cell types.&lt;br /&gt;
The current view of events leading to IFNβbiological activity is&lt;br /&gt;
as follows: 1) IFN binds to the extracellular domain of&lt;br /&gt;
IFNAR2. 2) IFNAR1 then engages with the IFNβ–IFNAR2 complex,&lt;br /&gt;
forming the high-affinity receptor–ligand complex and allowing&lt;br /&gt;
the intracellular domains of the two receptor chains and&lt;br /&gt;
associated proteins to interact. 3) This interaction, which includes&lt;br /&gt;
JAK1 (associated with IFNAR2) and Tyk2 (associated with IFNAR1),&lt;br /&gt;
results in a cascade of phosphorylation events that leads to&lt;br /&gt;
activation of STATS. 4) Activated STATS form a complex with other&lt;br /&gt;
cytoplasmic proteins, which then translocate into the nucleus to&lt;br /&gt;
bind to Interferon Sensitive Response Elements (ISRE), transcriptional control regions which are upstream of many IFN regulated&lt;br /&gt;
genes. 5) This ISRE binding results in transcriptional regulation&lt;br /&gt;
(both induction and inhibition) of &amp;gt;1000 genes.&lt;br /&gt;
Thus, IFN regulates expression of a myriad of genes. While the&lt;br /&gt;
function of some of these genes is clear (e.g. the antiviral product&lt;br /&gt;
MxA), the specific transcripts mediating therapeutic benefit of&lt;br /&gt;
IFNβin MS are unknown. This is, in part, due to the complexity and&lt;br /&gt;
heterogeneity of MS, but also because IFNβis an agonist that can&lt;br /&gt;
induce the expression not only of ISRE regulated genes, but&lt;br /&gt;
through newly expressed transcription factors, can induce or&lt;br /&gt;
inhibit subsequent waves of gene expression. In addition, some&lt;br /&gt;
IFNβregulated proteins, which include cytokines and chemokines,&lt;br /&gt;
can alter the level or function of particular cell populations. The&lt;br /&gt;
resulting multifaceted biological response is in contrast to&lt;br /&gt;
therapies such as monoclonal antibodies that have a much more&lt;br /&gt;
specific molecular target[2-9].&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;Reference&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
[1] R. Arduini, K. Strauch, L. Rukel etal.Characterization of a soluble ternary complex formed&lt;br /&gt;
between human interferon-b-1a and its receptor chains&#039;&#039;Protein Science&#039;&#039; (1999),&#039;&#039;8&#039;&#039;:1867–1877&lt;br /&gt;
&lt;br /&gt;
[2] T. Taniguchi, A. Takaoka, The interferon-alpha/beta system in&lt;br /&gt;
antiviral responses: a multimodal machinery of gene regulation&lt;br /&gt;
by the IRF family of transcription factors, Curr. Opin. Immunol.&lt;br /&gt;
14 (1) (Feb 2002) 111–116.&lt;br /&gt;
&lt;br /&gt;
[3] K. Kasama, J. Utsumi, E. Matsuo-Ogawa, T. Nagahata, Y. Kagawa,&lt;br /&gt;
S. Yamazaki, et al., Pharmacokinetics and biologic activities of&lt;br /&gt;
human native and asialointerferon-beta s, J. Interferon Cytokine&lt;br /&gt;
Res. 15 (5) (May 1995) 407–415.&lt;br /&gt;
&lt;br /&gt;
[4] L. Runkel, W. Meier, R.B. Pepinsky, M. Karpusas, A. Whitty,&lt;br /&gt;
K. Kimball, et al., Structural and functional differences between&lt;br /&gt;
glycosylated and non-glycosylated forms of human&lt;br /&gt;
interferon-beta (IFN-beta), Pharm. Res. 15 (4) (Apr 1998)&lt;br /&gt;
641–649.&lt;br /&gt;
&lt;br /&gt;
[5] R.M. Arduini, K.L. Strauch, L.A. Runkel, M.M. Carlson, X.&lt;br /&gt;
Hronowski, S.F. Foley, et al., Characterization of a soluble&lt;br /&gt;
ternary complex formed between human interferon-beta-1a&lt;br /&gt;
and its receptor chains, Protein Sci. 8 (9) (Sep 1999)&lt;br /&gt;
1867–1877.&lt;br /&gt;
&lt;br /&gt;
[6] G. Uze, G. Schreiber, J. Piehler, S. Pellegrini, The receptor of the&lt;br /&gt;
type I interferon family, Curr. Top. Microbiol. Immunol. 316&lt;br /&gt;
(2007) 71–95.&lt;br /&gt;
&lt;br /&gt;
[7] C.M. Cleary, R.J. Donnelly, J. Soh, T.M. Mariano, S. Pestka,&lt;br /&gt;
Knockout and reconstitution of a functional human type I&lt;br /&gt;
interferon receptor complex, J. Biol. Chem. 269 (29)&lt;br /&gt;
(Jul 22 1994) 18747–18749.&lt;br /&gt;
&lt;br /&gt;
[8] J. Kumaran, O.R. Colamonici, E.N. Fish, Structure–function study&lt;br /&gt;
of the extracellular domain of the human type I interferon&lt;br /&gt;
receptor (IFNAR)-1 subunit, J. Interferon Cytokine Res. 20 (5)&lt;br /&gt;
(May 2000) 479–485.&lt;br /&gt;
&lt;br /&gt;
[9] J. Ghislain, G. Sussman, S. Goelz, L.E. Ling, E.N. Fish, Configuration&lt;br /&gt;
of the interferon-alpha/beta receptor complex determines the&lt;br /&gt;
context of the biological response, J. Biol. Chem. 270 (37)&lt;br /&gt;
(Sep 15 1995) 21785–21792.&lt;/div&gt;</summary>
		<author><name>Chengfeng Ren</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=User:Chengfeng_Ren/IFN_beta_1a&amp;diff=1881132</id>
		<title>User:Chengfeng Ren/IFN beta 1a</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=User:Chengfeng_Ren/IFN_beta_1a&amp;diff=1881132"/>
		<updated>2013-12-26T00:43:26Z</updated>

		<summary type="html">&lt;p&gt;Chengfeng Ren: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;==&#039;&#039;&#039;IFN Categories and IFNβ-1a sources&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
Interferons (IFNs) are a family of helical cytokines that mediate&lt;br /&gt;
antiviral, antiproliferative, and immune modulatory activities in&lt;br /&gt;
response to biological and chemical stimuli. Two types of IFN are recognized on   &lt;br /&gt;
the basis of their physical and biological properties; type I, which   &lt;br /&gt;
contains the monomeric IFNs-α,-β,-τ, and -ω, and type II, the&lt;br /&gt;
only member of which is the dimeric IFN-γ. Representatives of all&lt;br /&gt;
type I and type II IFNs are found in humans, except for IFN-τ,&lt;br /&gt;
which is found only in ruminant ungulates. There are 12 different human IFNs-α;each one&lt;br /&gt;
comprising a different subtype,although 14 different genes have&lt;br /&gt;
been identified, whereas human IFN-β, IFN-ω, and IFN-γare&lt;br /&gt;
encoded by single genes[1].&lt;br /&gt;
&lt;br /&gt;
Interferon-βhas two subtyes, interferon-β-1a and interferon-β-1b. Interferon-β-1a is naturally expressed in numerous cell types in human, including &lt;br /&gt;
fibroblasts, endothelial cells, epithelial cells and various leukocytes, however,Interferon-β-1b is produced in modified E. coli.&lt;br /&gt;
&lt;br /&gt;
Here is a jpg clearly illustrating IFNs categories.&lt;br /&gt;
[[Image:IFN categories.jpg]]&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;Structure info. of IFNβ-1a&#039;&#039;&#039;==&lt;br /&gt;
IFNβ-1a consisting of 166 amino acids, around 20KDa. It has 5 helixs.&lt;br /&gt;
&amp;lt;Structure load=&#039;1au1&#039; size=&#039;500&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;IFN structure from PDB&#039; scene=&#039;IFN scene_structure&#039; /&amp;gt;&lt;br /&gt;
&amp;lt;scene name=&#039;56/566498/Ifn_beta_1a_scene_structure/1&#039;&amp;gt;IFN beta 1a structure&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;IFNβ-1a biological activity and therapeutic effects&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
IFNβ-1a as well as other family of IFNs has a variety of biological activities, inluding antiviral, antiproliferative, and immune modulatory activities in response to biological and chemical stimuli[2]. &lt;br /&gt;
&lt;br /&gt;
IFNβ-1a is mainly used to treat relapsing forms of multiple sclerosis(MS).&lt;br /&gt;
MS is a life-long disease that affects your nervous system &lt;br /&gt;
by destroying the protective covering (myelin) that surrounds&lt;br /&gt;
your nerve fibers.&lt;br /&gt;
The commercial available drug format is [http://http://www.avonex.com/ Avonex].(Please refer to the drug guide before using it)&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;Mechanism of action for IFNβ-1a&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The IFNβreceptor, signaling cascade and gene regulation&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
The IFNβreceptor is composed of 2 required chains—a signaling&lt;br /&gt;
chain,&amp;lt;scene name=&#039;56/566498/Human_ifnar1/1&#039;&amp;gt;IFNAR1&amp;lt;/scene&amp;gt; , and a binding chain, &amp;lt;scene name=&#039;56/566498/Ifnar2/1&#039;&amp;gt;IFNAR2&amp;lt;/scene&amp;gt;. Both IFNAR1 and&lt;br /&gt;
IFNAR2 are constitutively expressed on the surface of virtually all cells. IFNβcan bind to IFNAR2 alone, but can bind to IFNAR1 only in&lt;br /&gt;
the presence of IFNAR2. The strength of IFNβbinding to its&lt;br /&gt;
receptor is much higher when both subunits are present.&lt;br /&gt;
Knockout experiments indicate that both IFNAR1 and IFNAR2 are&lt;br /&gt;
required for IFNβ activity, but it remains uncertain&lt;br /&gt;
whether there are auxiliary receptors or alternative receptor/&lt;br /&gt;
signaling complexes in some cell types.&lt;br /&gt;
The current view of events leading to IFNβbiological activity is&lt;br /&gt;
as follows: 1) IFN binds to the extracellular domain of&lt;br /&gt;
IFNAR2. 2) IFNAR1 then engages with the IFNβ–IFNAR2 complex,&lt;br /&gt;
forming the high-affinity receptor–ligand complex and allowing&lt;br /&gt;
the intracellular domains of the two receptor chains and&lt;br /&gt;
associated proteins to interact. 3) This interaction, which includes&lt;br /&gt;
JAK1 (associated with IFNAR2) and Tyk2 (associated with IFNAR1),&lt;br /&gt;
results in a cascade of phosphorylation events that leads to&lt;br /&gt;
activation of STATS. 4) Activated STATS form a complex with other&lt;br /&gt;
cytoplasmic proteins, which then translocate into the nucleus to&lt;br /&gt;
bind to Interferon Sensitive Response Elements (ISRE), transcriptional control regions which are upstream of many IFN regulated&lt;br /&gt;
genes. 5) This ISRE binding results in transcriptional regulation&lt;br /&gt;
(both induction and inhibition) of &amp;gt;1000 genes.&lt;br /&gt;
Thus, IFN regulates expression of a myriad of genes. While the&lt;br /&gt;
function of some of these genes is clear (e.g. the antiviral product&lt;br /&gt;
MxA), the specific transcripts mediating therapeutic benefit of&lt;br /&gt;
IFNβin MS are unknown. This is, in part, due to the complexity and&lt;br /&gt;
heterogeneity of MS, but also because IFNβis an agonist that can&lt;br /&gt;
induce the expression not only of ISRE regulated genes, but&lt;br /&gt;
through newly expressed transcription factors, can induce or&lt;br /&gt;
inhibit subsequent waves of gene expression. In addition, some&lt;br /&gt;
IFNβregulated proteins, which include cytokines and chemokines,&lt;br /&gt;
can alter the level or function of particular cell populations. The&lt;br /&gt;
resulting multifaceted biological response is in contrast to&lt;br /&gt;
therapies such as monoclonal antibodies that have a much more&lt;br /&gt;
specific molecular target[2-9].&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;Reference&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
[1] R. Arduini, K. Strauch, L. Rukel etal.Characterization of a soluble ternary complex formed&lt;br /&gt;
between human interferon-b-1a and its receptor chains&#039;&#039;Protein Science&#039;&#039; (1999),&#039;&#039;8&#039;&#039;:1867–1877&lt;br /&gt;
&lt;br /&gt;
[2] T. Taniguchi, A. Takaoka, The interferon-alpha/beta system in&lt;br /&gt;
antiviral responses: a multimodal machinery of gene regulation&lt;br /&gt;
by the IRF family of transcription factors, Curr. Opin. Immunol.&lt;br /&gt;
14 (1) (Feb 2002) 111–116.&lt;br /&gt;
&lt;br /&gt;
[3] K. Kasama, J. Utsumi, E. Matsuo-Ogawa, T. Nagahata, Y. Kagawa,&lt;br /&gt;
S. Yamazaki, et al., Pharmacokinetics and biologic activities of&lt;br /&gt;
human native and asialointerferon-beta s, J. Interferon Cytokine&lt;br /&gt;
Res. 15 (5) (May 1995) 407–415.&lt;br /&gt;
&lt;br /&gt;
[4] L. Runkel, W. Meier, R.B. Pepinsky, M. Karpusas, A. Whitty,&lt;br /&gt;
K. Kimball, et al., Structural and functional differences between&lt;br /&gt;
glycosylated and non-glycosylated forms of human&lt;br /&gt;
interferon-beta (IFN-beta), Pharm. Res. 15 (4) (Apr 1998)&lt;br /&gt;
641–649.&lt;br /&gt;
&lt;br /&gt;
[5] R.M. Arduini, K.L. Strauch, L.A. Runkel, M.M. Carlson, X.&lt;br /&gt;
Hronowski, S.F. Foley, et al., Characterization of a soluble&lt;br /&gt;
ternary complex formed between human interferon-beta-1a&lt;br /&gt;
and its receptor chains, Protein Sci. 8 (9) (Sep 1999)&lt;br /&gt;
1867–1877.&lt;br /&gt;
&lt;br /&gt;
[6] G. Uze, G. Schreiber, J. Piehler, S. Pellegrini, The receptor of the&lt;br /&gt;
type I interferon family, Curr. Top. Microbiol. Immunol. 316&lt;br /&gt;
(2007) 71–95.&lt;br /&gt;
&lt;br /&gt;
[7] C.M. Cleary, R.J. Donnelly, J. Soh, T.M. Mariano, S. Pestka,&lt;br /&gt;
Knockout and reconstitution of a functional human type I&lt;br /&gt;
interferon receptor complex, J. Biol. Chem. 269 (29)&lt;br /&gt;
(Jul 22 1994) 18747–18749.&lt;br /&gt;
&lt;br /&gt;
[8] J. Kumaran, O.R. Colamonici, E.N. Fish, Structure–function study&lt;br /&gt;
of the extracellular domain of the human type I interferon&lt;br /&gt;
receptor (IFNAR)-1 subunit, J. Interferon Cytokine Res. 20 (5)&lt;br /&gt;
(May 2000) 479–485.&lt;br /&gt;
&lt;br /&gt;
[9] J. Ghislain, G. Sussman, S. Goelz, L.E. Ling, E.N. Fish, Configuration&lt;br /&gt;
of the interferon-alpha/beta receptor complex determines the&lt;br /&gt;
context of the biological response, J. Biol. Chem. 270 (37)&lt;br /&gt;
(Sep 15 1995) 21785–21792.&lt;/div&gt;</summary>
		<author><name>Chengfeng Ren</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Chengfeng_Ren/Sandbox1&amp;diff=1878687</id>
		<title>Chengfeng Ren/Sandbox1</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Chengfeng_Ren/Sandbox1&amp;diff=1878687"/>
		<updated>2013-12-19T06:47:47Z</updated>

		<summary type="html">&lt;p&gt;Chengfeng Ren: /* &amp;#039;&amp;#039;&amp;#039;Mechanism of action for IFNβ-1a&amp;#039;&amp;#039;&amp;#039; */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;==&#039;&#039;&#039;IFN Categories and IFNβ-1a sources&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
Interferons (IFNs) are a family of helical cytokines that mediate&lt;br /&gt;
antiviral, antiproliferative, and immune modulatory activities in&lt;br /&gt;
response to biological and chemical stimuli. Two types of IFN are recognized on   &lt;br /&gt;
the basis of their physical and biological properties; type I, which   &lt;br /&gt;
contains the monomeric IFNs-α,-β,-τ, and -ω, and type II, the&lt;br /&gt;
only member of which is the dimeric IFN-γ. Representatives of all&lt;br /&gt;
type I and type II IFNs are found in humans, except for IFN-τ,&lt;br /&gt;
which is found only in ruminant ungulates. There are 12 different human IFNs-α;each one&lt;br /&gt;
comprising a different subtype,although 14 different genes have&lt;br /&gt;
been identified, whereas human IFN-β, IFN-ω, and IFN-γare&lt;br /&gt;
encoded by single genes[1].&lt;br /&gt;
&lt;br /&gt;
Interferon-βhas two subtyes, interferon-β-1a and interferon-β-1b. Interferon-β-1a is naturally expressed in numerous cell types in human, including &lt;br /&gt;
fibroblasts, endothelial cells, epithelial cells and various leukocytes, however,Interferon-β-1b is produced in modified E. coli.&lt;br /&gt;
&lt;br /&gt;
Here is a jpg clearly illustrating IFNs categories.&lt;br /&gt;
[[Image:IFN categories.jpg]]&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;Structure info. of IFNβ-1a&#039;&#039;&#039;==&lt;br /&gt;
IFNβ-1a consisting of 166 amino acids, around 20KDa. It has 5 helixs.&lt;br /&gt;
&amp;lt;Structure load=&#039;1au1&#039; size=&#039;500&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;IFN structure from PDB&#039; scene=&#039;IFN scene_structure&#039; /&amp;gt;&lt;br /&gt;
&amp;lt;scene name=&#039;56/566498/Ifn_beta_1a_scene_structure/1&#039;&amp;gt;IFN beta 1a structure&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;IFNβ-1a biological activity and therapeutic effects&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
IFNβ-1a as well as other family of IFNs has a variety of biological activities, inluding antiviral, antiproliferative, and immune modulatory activities in response to biological and chemical stimuli[2]. &lt;br /&gt;
&lt;br /&gt;
IFNβ-1a is mainly used to treat relapsing forms of multiple sclerosis(MS).&lt;br /&gt;
MS is a life-long disease that affects your nervous system &lt;br /&gt;
by destroying the protective covering (myelin) that surrounds&lt;br /&gt;
your nerve fibers.&lt;br /&gt;
The commercial available drug format is [http://http://www.avonex.com/ Avonex].(Please refer to the drug guide before using it)&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;Mechanism of action for IFNβ-1a&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The IFNβreceptor, signaling cascade and gene regulation&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
The IFNβreceptor is composed of 2 required chains—a signaling&lt;br /&gt;
chain,&amp;lt;scene name=&#039;56/566498/Human_ifnar1/1&#039;&amp;gt;IFNAR1&amp;lt;/scene&amp;gt; , and a binding chain, &amp;lt;scene name=&#039;56/566498/Ifnar2/1&#039;&amp;gt;IFNAR2&amp;lt;/scene&amp;gt;. Both IFNAR1 and&lt;br /&gt;
IFNAR2 are constitutively expressed on the surface of virtually all cells. IFNβcan bind to IFNAR2 alone, but can bind to IFNAR1 only in&lt;br /&gt;
the presence of IFNAR2. The strength of IFNβbinding to its&lt;br /&gt;
receptor is much higher when both subunits are present.&lt;br /&gt;
Knockout experiments indicate that both IFNAR1 and IFNAR2 are&lt;br /&gt;
required for IFNβ activity, but it remains uncertain&lt;br /&gt;
whether there are auxiliary receptors or alternative receptor/&lt;br /&gt;
signaling complexes in some cell types.&lt;br /&gt;
The current view of events leading to IFNβbiological activity is&lt;br /&gt;
as follows: 1) IFN binds to the extracellular domain of&lt;br /&gt;
IFNAR2. 2) IFNAR1 then engages with the IFNβ–IFNAR2 complex,&lt;br /&gt;
forming the high-affinity receptor–ligand complex and allowing&lt;br /&gt;
the intracellular domains of the two receptor chains and&lt;br /&gt;
associated proteins to interact. 3) This interaction, which includes&lt;br /&gt;
JAK1 (associated with IFNAR2) and Tyk2 (associated with IFNAR1),&lt;br /&gt;
results in a cascade of phosphorylation events that leads to&lt;br /&gt;
activation of STATS. 4) Activated STATS form a complex with other&lt;br /&gt;
cytoplasmic proteins, which then translocate into the nucleus to&lt;br /&gt;
bind to Interferon Sensitive Response Elements (ISRE), transcriptional control regions which are upstream of many IFN regulated&lt;br /&gt;
genes. 5) This ISRE binding results in transcriptional regulation&lt;br /&gt;
(both induction and inhibition) of &amp;gt;1000 genes.&lt;br /&gt;
Thus, IFN regulates expression of a myriad of genes. While the&lt;br /&gt;
function of some of these genes is clear (e.g. the antiviral product&lt;br /&gt;
MxA), the specific transcripts mediating therapeutic benefit of&lt;br /&gt;
IFNβin MS are unknown. This is, in part, due to the complexity and&lt;br /&gt;
heterogeneity of MS, but also because IFNβis an agonist that can&lt;br /&gt;
induce the expression not only of ISRE regulated genes, but&lt;br /&gt;
through newly expressed transcription factors, can induce or&lt;br /&gt;
inhibit subsequent waves of gene expression. In addition, some&lt;br /&gt;
IFNβregulated proteins, which include cytokines and chemokines,&lt;br /&gt;
can alter the level or function of particular cell populations. The&lt;br /&gt;
resulting multifaceted biological response is in contrast to&lt;br /&gt;
therapies such as monoclonal antibodies that have a much more&lt;br /&gt;
specific molecular target[2-9].&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;Reference&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
[1] R. Arduini, K. Strauch, L. Rukel etal.Characterization of a soluble ternary complex formed&lt;br /&gt;
between human interferon-b-1a and its receptor chains&#039;&#039;Protein Science&#039;&#039; (1999),&#039;&#039;8&#039;&#039;:1867–1877&lt;br /&gt;
&lt;br /&gt;
[2] T. Taniguchi, A. Takaoka, The interferon-alpha/beta system in&lt;br /&gt;
antiviral responses: a multimodal machinery of gene regulation&lt;br /&gt;
by the IRF family of transcription factors, Curr. Opin. Immunol.&lt;br /&gt;
14 (1) (Feb 2002) 111–116.&lt;br /&gt;
&lt;br /&gt;
[3] K. Kasama, J. Utsumi, E. Matsuo-Ogawa, T. Nagahata, Y. Kagawa,&lt;br /&gt;
S. Yamazaki, et al., Pharmacokinetics and biologic activities of&lt;br /&gt;
human native and asialointerferon-beta s, J. Interferon Cytokine&lt;br /&gt;
Res. 15 (5) (May 1995) 407–415.&lt;br /&gt;
&lt;br /&gt;
[4] L. Runkel, W. Meier, R.B. Pepinsky, M. Karpusas, A. Whitty,&lt;br /&gt;
K. Kimball, et al., Structural and functional differences between&lt;br /&gt;
glycosylated and non-glycosylated forms of human&lt;br /&gt;
interferon-beta (IFN-beta), Pharm. Res. 15 (4) (Apr 1998)&lt;br /&gt;
641–649.&lt;br /&gt;
&lt;br /&gt;
[5] R.M. Arduini, K.L. Strauch, L.A. Runkel, M.M. Carlson, X.&lt;br /&gt;
Hronowski, S.F. Foley, et al., Characterization of a soluble&lt;br /&gt;
ternary complex formed between human interferon-beta-1a&lt;br /&gt;
and its receptor chains, Protein Sci. 8 (9) (Sep 1999)&lt;br /&gt;
1867–1877.&lt;br /&gt;
&lt;br /&gt;
[6] G. Uze, G. Schreiber, J. Piehler, S. Pellegrini, The receptor of the&lt;br /&gt;
type I interferon family, Curr. Top. Microbiol. Immunol. 316&lt;br /&gt;
(2007) 71–95.&lt;br /&gt;
&lt;br /&gt;
[7] C.M. Cleary, R.J. Donnelly, J. Soh, T.M. Mariano, S. Pestka,&lt;br /&gt;
Knockout and reconstitution of a functional human type I&lt;br /&gt;
interferon receptor complex, J. Biol. Chem. 269 (29)&lt;br /&gt;
(Jul 22 1994) 18747–18749.&lt;br /&gt;
&lt;br /&gt;
[8] J. Kumaran, O.R. Colamonici, E.N. Fish, Structure–function study&lt;br /&gt;
of the extracellular domain of the human type I interferon&lt;br /&gt;
receptor (IFNAR)-1 subunit, J. Interferon Cytokine Res. 20 (5)&lt;br /&gt;
(May 2000) 479–485.&lt;br /&gt;
&lt;br /&gt;
[9] J. Ghislain, G. Sussman, S. Goelz, L.E. Ling, E.N. Fish, Configuration&lt;br /&gt;
of the interferon-alpha/beta receptor complex determines the&lt;br /&gt;
context of the biological response, J. Biol. Chem. 270 (37)&lt;br /&gt;
(Sep 15 1995) 21785–21792.&lt;/div&gt;</summary>
		<author><name>Chengfeng Ren</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Chengfeng_Ren/Sandbox1&amp;diff=1878686</id>
		<title>Chengfeng Ren/Sandbox1</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Chengfeng_Ren/Sandbox1&amp;diff=1878686"/>
		<updated>2013-12-19T06:42:49Z</updated>

		<summary type="html">&lt;p&gt;Chengfeng Ren: /* &amp;#039;&amp;#039;&amp;#039;Mechanism of action for IFNβ-1a&amp;#039;&amp;#039;&amp;#039; */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;==&#039;&#039;&#039;IFN Categories and IFNβ-1a sources&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
Interferons (IFNs) are a family of helical cytokines that mediate&lt;br /&gt;
antiviral, antiproliferative, and immune modulatory activities in&lt;br /&gt;
response to biological and chemical stimuli. Two types of IFN are recognized on   &lt;br /&gt;
the basis of their physical and biological properties; type I, which   &lt;br /&gt;
contains the monomeric IFNs-α,-β,-τ, and -ω, and type II, the&lt;br /&gt;
only member of which is the dimeric IFN-γ. Representatives of all&lt;br /&gt;
type I and type II IFNs are found in humans, except for IFN-τ,&lt;br /&gt;
which is found only in ruminant ungulates. There are 12 different human IFNs-α;each one&lt;br /&gt;
comprising a different subtype,although 14 different genes have&lt;br /&gt;
been identified, whereas human IFN-β, IFN-ω, and IFN-γare&lt;br /&gt;
encoded by single genes[1].&lt;br /&gt;
&lt;br /&gt;
Interferon-βhas two subtyes, interferon-β-1a and interferon-β-1b. Interferon-β-1a is naturally expressed in numerous cell types in human, including &lt;br /&gt;
fibroblasts, endothelial cells, epithelial cells and various leukocytes, however,Interferon-β-1b is produced in modified E. coli.&lt;br /&gt;
&lt;br /&gt;
Here is a jpg clearly illustrating IFNs categories.&lt;br /&gt;
[[Image:IFN categories.jpg]]&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;Structure info. of IFNβ-1a&#039;&#039;&#039;==&lt;br /&gt;
IFNβ-1a consisting of 166 amino acids, around 20KDa. It has 5 helixs.&lt;br /&gt;
&amp;lt;Structure load=&#039;1au1&#039; size=&#039;500&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;IFN structure from PDB&#039; scene=&#039;IFN scene_structure&#039; /&amp;gt;&lt;br /&gt;
&amp;lt;scene name=&#039;56/566498/Ifn_beta_1a_scene_structure/1&#039;&amp;gt;IFN beta 1a structure&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;IFNβ-1a biological activity and therapeutic effects&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
IFNβ-1a as well as other family of IFNs has a variety of biological activities, inluding antiviral, antiproliferative, and immune modulatory activities in response to biological and chemical stimuli[2]. &lt;br /&gt;
&lt;br /&gt;
IFNβ-1a is mainly used to treat relapsing forms of multiple sclerosis(MS).&lt;br /&gt;
MS is a life-long disease that affects your nervous system &lt;br /&gt;
by destroying the protective covering (myelin) that surrounds&lt;br /&gt;
your nerve fibers.&lt;br /&gt;
The commercial available drug format is [http://http://www.avonex.com/ Avonex].(Please refer to the drug guide before using it)&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;Mechanism of action for IFNβ-1a&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The IFNβreceptor, signaling cascade and gene regulation&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
The IFNβreceptor is composed of 2 required chains—a signaling&lt;br /&gt;
chain, IFNAR1, and a binding chain, IFNAR2. Both IFNAR1 and&lt;br /&gt;
IFNAR2 are constitutively expressed on the surface of virtually all cells. IFNβcan bind to IFNAR2 alone, but can bind to &amp;lt;scene name=&#039;56/566498/Human_ifnar1/1&#039;&amp;gt;IFNAR1&amp;lt;/scene&amp;gt; only in&lt;br /&gt;
the presence of IFNAR2. The strength of IFNβbinding to its&lt;br /&gt;
receptor is much higher when both subunits are present.&lt;br /&gt;
Knockout experiments indicate that both IFNAR1 and IFNAR2 are&lt;br /&gt;
required for IFNβ activity, but it remains uncertain&lt;br /&gt;
whether there are auxiliary receptors or alternative receptor/&lt;br /&gt;
signaling complexes in some cell types.&lt;br /&gt;
The current view of events leading to IFNβbiological activity is&lt;br /&gt;
as follows: 1) IFN binds to the extracellular domain of&lt;br /&gt;
IFNAR2. 2) IFNAR1 then engages with the IFNβ–IFNAR2 complex,&lt;br /&gt;
forming the high-affinity receptor–ligand complex and allowing&lt;br /&gt;
the intracellular domains of the two receptor chains and&lt;br /&gt;
associated proteins to interact. 3) This interaction, which includes&lt;br /&gt;
JAK1 (associated with IFNAR2) and Tyk2 (associated with IFNAR1),&lt;br /&gt;
results in a cascade of phosphorylation events that leads to&lt;br /&gt;
activation of STATS. 4) Activated STATS form a complex with other&lt;br /&gt;
cytoplasmic proteins, which then translocate into the nucleus to&lt;br /&gt;
bind to Interferon Sensitive Response Elements (ISRE), transcriptional control regions which are upstream of many IFN regulated&lt;br /&gt;
genes. 5) This ISRE binding results in transcriptional regulation&lt;br /&gt;
(both induction and inhibition) of &amp;gt;1000 genes.&lt;br /&gt;
Thus, IFN regulates expression of a myriad of genes. While the&lt;br /&gt;
function of some of these genes is clear (e.g. the antiviral product&lt;br /&gt;
MxA), the specific transcripts mediating therapeutic benefit of&lt;br /&gt;
IFNβin MS are unknown. This is, in part, due to the complexity and&lt;br /&gt;
heterogeneity of MS, but also because IFNβis an agonist that can&lt;br /&gt;
induce the expression not only of ISRE regulated genes, but&lt;br /&gt;
through newly expressed transcription factors, can induce or&lt;br /&gt;
inhibit subsequent waves of gene expression. In addition, some&lt;br /&gt;
IFNβregulated proteins, which include cytokines and chemokines,&lt;br /&gt;
can alter the level or function of particular cell populations. The&lt;br /&gt;
resulting multifaceted biological response is in contrast to&lt;br /&gt;
therapies such as monoclonal antibodies that have a much more&lt;br /&gt;
specific molecular target[2-9].&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;Reference&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
[1] R. Arduini, K. Strauch, L. Rukel etal.Characterization of a soluble ternary complex formed&lt;br /&gt;
between human interferon-b-1a and its receptor chains&#039;&#039;Protein Science&#039;&#039; (1999),&#039;&#039;8&#039;&#039;:1867–1877&lt;br /&gt;
&lt;br /&gt;
[2] T. Taniguchi, A. Takaoka, The interferon-alpha/beta system in&lt;br /&gt;
antiviral responses: a multimodal machinery of gene regulation&lt;br /&gt;
by the IRF family of transcription factors, Curr. Opin. Immunol.&lt;br /&gt;
14 (1) (Feb 2002) 111–116.&lt;br /&gt;
&lt;br /&gt;
[3] K. Kasama, J. Utsumi, E. Matsuo-Ogawa, T. Nagahata, Y. Kagawa,&lt;br /&gt;
S. Yamazaki, et al., Pharmacokinetics and biologic activities of&lt;br /&gt;
human native and asialointerferon-beta s, J. Interferon Cytokine&lt;br /&gt;
Res. 15 (5) (May 1995) 407–415.&lt;br /&gt;
&lt;br /&gt;
[4] L. Runkel, W. Meier, R.B. Pepinsky, M. Karpusas, A. Whitty,&lt;br /&gt;
K. Kimball, et al., Structural and functional differences between&lt;br /&gt;
glycosylated and non-glycosylated forms of human&lt;br /&gt;
interferon-beta (IFN-beta), Pharm. Res. 15 (4) (Apr 1998)&lt;br /&gt;
641–649.&lt;br /&gt;
&lt;br /&gt;
[5] R.M. Arduini, K.L. Strauch, L.A. Runkel, M.M. Carlson, X.&lt;br /&gt;
Hronowski, S.F. Foley, et al., Characterization of a soluble&lt;br /&gt;
ternary complex formed between human interferon-beta-1a&lt;br /&gt;
and its receptor chains, Protein Sci. 8 (9) (Sep 1999)&lt;br /&gt;
1867–1877.&lt;br /&gt;
&lt;br /&gt;
[6] G. Uze, G. Schreiber, J. Piehler, S. Pellegrini, The receptor of the&lt;br /&gt;
type I interferon family, Curr. Top. Microbiol. Immunol. 316&lt;br /&gt;
(2007) 71–95.&lt;br /&gt;
&lt;br /&gt;
[7] C.M. Cleary, R.J. Donnelly, J. Soh, T.M. Mariano, S. Pestka,&lt;br /&gt;
Knockout and reconstitution of a functional human type I&lt;br /&gt;
interferon receptor complex, J. Biol. Chem. 269 (29)&lt;br /&gt;
(Jul 22 1994) 18747–18749.&lt;br /&gt;
&lt;br /&gt;
[8] J. Kumaran, O.R. Colamonici, E.N. Fish, Structure–function study&lt;br /&gt;
of the extracellular domain of the human type I interferon&lt;br /&gt;
receptor (IFNAR)-1 subunit, J. Interferon Cytokine Res. 20 (5)&lt;br /&gt;
(May 2000) 479–485.&lt;br /&gt;
&lt;br /&gt;
[9] J. Ghislain, G. Sussman, S. Goelz, L.E. Ling, E.N. Fish, Configuration&lt;br /&gt;
of the interferon-alpha/beta receptor complex determines the&lt;br /&gt;
context of the biological response, J. Biol. Chem. 270 (37)&lt;br /&gt;
(Sep 15 1995) 21785–21792.&lt;/div&gt;</summary>
		<author><name>Chengfeng Ren</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Chengfeng_Ren/Sandbox1&amp;diff=1878685</id>
		<title>Chengfeng Ren/Sandbox1</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Chengfeng_Ren/Sandbox1&amp;diff=1878685"/>
		<updated>2013-12-19T06:42:03Z</updated>

		<summary type="html">&lt;p&gt;Chengfeng Ren: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;==&#039;&#039;&#039;IFN Categories and IFNβ-1a sources&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
Interferons (IFNs) are a family of helical cytokines that mediate&lt;br /&gt;
antiviral, antiproliferative, and immune modulatory activities in&lt;br /&gt;
response to biological and chemical stimuli. Two types of IFN are recognized on   &lt;br /&gt;
the basis of their physical and biological properties; type I, which   &lt;br /&gt;
contains the monomeric IFNs-α,-β,-τ, and -ω, and type II, the&lt;br /&gt;
only member of which is the dimeric IFN-γ. Representatives of all&lt;br /&gt;
type I and type II IFNs are found in humans, except for IFN-τ,&lt;br /&gt;
which is found only in ruminant ungulates. There are 12 different human IFNs-α;each one&lt;br /&gt;
comprising a different subtype,although 14 different genes have&lt;br /&gt;
been identified, whereas human IFN-β, IFN-ω, and IFN-γare&lt;br /&gt;
encoded by single genes[1].&lt;br /&gt;
&lt;br /&gt;
Interferon-βhas two subtyes, interferon-β-1a and interferon-β-1b. Interferon-β-1a is naturally expressed in numerous cell types in human, including &lt;br /&gt;
fibroblasts, endothelial cells, epithelial cells and various leukocytes, however,Interferon-β-1b is produced in modified E. coli.&lt;br /&gt;
&lt;br /&gt;
Here is a jpg clearly illustrating IFNs categories.&lt;br /&gt;
[[Image:IFN categories.jpg]]&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;Structure info. of IFNβ-1a&#039;&#039;&#039;==&lt;br /&gt;
IFNβ-1a consisting of 166 amino acids, around 20KDa. It has 5 helixs.&lt;br /&gt;
&amp;lt;Structure load=&#039;1au1&#039; size=&#039;500&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;IFN structure from PDB&#039; scene=&#039;IFN scene_structure&#039; /&amp;gt;&lt;br /&gt;
&amp;lt;scene name=&#039;56/566498/Ifn_beta_1a_scene_structure/1&#039;&amp;gt;IFN beta 1a structure&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;IFNβ-1a biological activity and therapeutic effects&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
IFNβ-1a as well as other family of IFNs has a variety of biological activities, inluding antiviral, antiproliferative, and immune modulatory activities in response to biological and chemical stimuli[2]. &lt;br /&gt;
&lt;br /&gt;
IFNβ-1a is mainly used to treat relapsing forms of multiple sclerosis(MS).&lt;br /&gt;
MS is a life-long disease that affects your nervous system &lt;br /&gt;
by destroying the protective covering (myelin) that surrounds&lt;br /&gt;
your nerve fibers.&lt;br /&gt;
The commercial available drug format is [http://http://www.avonex.com/ Avonex].(Please refer to the drug guide before using it)&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;Mechanism of action for IFNβ-1a&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The IFNβreceptor, signaling cascade and gene regulation&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
The IFNβreceptor is composed of 2 required chains—a signaling&lt;br /&gt;
chain, IFNAR1, and a binding chain, IFNAR2. Both IFNAR1 and&lt;br /&gt;
IFNAR2 are constitutively expressed on the surface of virtually all cells. IFNβcan bind to IFNAR2 alone, but can bind to IFNAR1&amp;lt;scene name=&#039;56/566498/Human_ifnar1/1&#039;&amp;gt;IFNAR1&amp;lt;/scene&amp;gt; only in&lt;br /&gt;
the presence of IFNAR2. The strength of IFNβbinding to its&lt;br /&gt;
receptor is much higher when both subunits are present.&lt;br /&gt;
Knockout experiments indicate that both IFNAR1 and IFNAR2 are&lt;br /&gt;
required for IFNβ activity, but it remains uncertain&lt;br /&gt;
whether there are auxiliary receptors or alternative receptor/&lt;br /&gt;
signaling complexes in some cell types.&lt;br /&gt;
The current view of events leading to IFNβbiological activity is&lt;br /&gt;
as follows: 1) IFN binds to the extracellular domain of&lt;br /&gt;
IFNAR2. 2) IFNAR1 then engages with the IFNβ–IFNAR2 complex,&lt;br /&gt;
forming the high-affinity receptor–ligand complex and allowing&lt;br /&gt;
the intracellular domains of the two receptor chains and&lt;br /&gt;
associated proteins to interact. 3) This interaction, which includes&lt;br /&gt;
JAK1 (associated with IFNAR2) and Tyk2 (associated with IFNAR1),&lt;br /&gt;
results in a cascade of phosphorylation events that leads to&lt;br /&gt;
activation of STATS. 4) Activated STATS form a complex with other&lt;br /&gt;
cytoplasmic proteins, which then translocate into the nucleus to&lt;br /&gt;
bind to Interferon Sensitive Response Elements (ISRE), transcriptional control regions which are upstream of many IFN regulated&lt;br /&gt;
genes. 5) This ISRE binding results in transcriptional regulation&lt;br /&gt;
(both induction and inhibition) of &amp;gt;1000 genes.&lt;br /&gt;
Thus, IFN regulates expression of a myriad of genes. While the&lt;br /&gt;
function of some of these genes is clear (e.g. the antiviral product&lt;br /&gt;
MxA), the specific transcripts mediating therapeutic benefit of&lt;br /&gt;
IFNβin MS are unknown. This is, in part, due to the complexity and&lt;br /&gt;
heterogeneity of MS, but also because IFNβis an agonist that can&lt;br /&gt;
induce the expression not only of ISRE regulated genes, but&lt;br /&gt;
through newly expressed transcription factors, can induce or&lt;br /&gt;
inhibit subsequent waves of gene expression. In addition, some&lt;br /&gt;
IFNβregulated proteins, which include cytokines and chemokines,&lt;br /&gt;
can alter the level or function of particular cell populations. The&lt;br /&gt;
resulting multifaceted biological response is in contrast to&lt;br /&gt;
therapies such as monoclonal antibodies that have a much more&lt;br /&gt;
specific molecular target[2-9].&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;Reference&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
[1] R. Arduini, K. Strauch, L. Rukel etal.Characterization of a soluble ternary complex formed&lt;br /&gt;
between human interferon-b-1a and its receptor chains&#039;&#039;Protein Science&#039;&#039; (1999),&#039;&#039;8&#039;&#039;:1867–1877&lt;br /&gt;
&lt;br /&gt;
[2] T. Taniguchi, A. Takaoka, The interferon-alpha/beta system in&lt;br /&gt;
antiviral responses: a multimodal machinery of gene regulation&lt;br /&gt;
by the IRF family of transcription factors, Curr. Opin. Immunol.&lt;br /&gt;
14 (1) (Feb 2002) 111–116.&lt;br /&gt;
&lt;br /&gt;
[3] K. Kasama, J. Utsumi, E. Matsuo-Ogawa, T. Nagahata, Y. Kagawa,&lt;br /&gt;
S. Yamazaki, et al., Pharmacokinetics and biologic activities of&lt;br /&gt;
human native and asialointerferon-beta s, J. Interferon Cytokine&lt;br /&gt;
Res. 15 (5) (May 1995) 407–415.&lt;br /&gt;
&lt;br /&gt;
[4] L. Runkel, W. Meier, R.B. Pepinsky, M. Karpusas, A. Whitty,&lt;br /&gt;
K. Kimball, et al., Structural and functional differences between&lt;br /&gt;
glycosylated and non-glycosylated forms of human&lt;br /&gt;
interferon-beta (IFN-beta), Pharm. Res. 15 (4) (Apr 1998)&lt;br /&gt;
641–649.&lt;br /&gt;
&lt;br /&gt;
[5] R.M. Arduini, K.L. Strauch, L.A. Runkel, M.M. Carlson, X.&lt;br /&gt;
Hronowski, S.F. Foley, et al., Characterization of a soluble&lt;br /&gt;
ternary complex formed between human interferon-beta-1a&lt;br /&gt;
and its receptor chains, Protein Sci. 8 (9) (Sep 1999)&lt;br /&gt;
1867–1877.&lt;br /&gt;
&lt;br /&gt;
[6] G. Uze, G. Schreiber, J. Piehler, S. Pellegrini, The receptor of the&lt;br /&gt;
type I interferon family, Curr. Top. Microbiol. Immunol. 316&lt;br /&gt;
(2007) 71–95.&lt;br /&gt;
&lt;br /&gt;
[7] C.M. Cleary, R.J. Donnelly, J. Soh, T.M. Mariano, S. Pestka,&lt;br /&gt;
Knockout and reconstitution of a functional human type I&lt;br /&gt;
interferon receptor complex, J. Biol. Chem. 269 (29)&lt;br /&gt;
(Jul 22 1994) 18747–18749.&lt;br /&gt;
&lt;br /&gt;
[8] J. Kumaran, O.R. Colamonici, E.N. Fish, Structure–function study&lt;br /&gt;
of the extracellular domain of the human type I interferon&lt;br /&gt;
receptor (IFNAR)-1 subunit, J. Interferon Cytokine Res. 20 (5)&lt;br /&gt;
(May 2000) 479–485.&lt;br /&gt;
&lt;br /&gt;
[9] J. Ghislain, G. Sussman, S. Goelz, L.E. Ling, E.N. Fish, Configuration&lt;br /&gt;
of the interferon-alpha/beta receptor complex determines the&lt;br /&gt;
context of the biological response, J. Biol. Chem. 270 (37)&lt;br /&gt;
(Sep 15 1995) 21785–21792.&lt;/div&gt;</summary>
		<author><name>Chengfeng Ren</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Chengfeng_Ren/Sandbox1&amp;diff=1878684</id>
		<title>Chengfeng Ren/Sandbox1</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Chengfeng_Ren/Sandbox1&amp;diff=1878684"/>
		<updated>2013-12-19T04:51:09Z</updated>

		<summary type="html">&lt;p&gt;Chengfeng Ren: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;==&#039;&#039;&#039;IFN Categories and IFNβ-1a sources&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
Interferons (IFNs) are a family of helical cytokines that mediate&lt;br /&gt;
antiviral, antiproliferative, and immune modulatory activities in&lt;br /&gt;
response to biological and chemical stimuli. Two types of IFN are recognized on   &lt;br /&gt;
the basis of their physical and biological properties; type I, which   &lt;br /&gt;
contains the monomeric IFNs-α,-β,-τ, and -ω, and type II, the&lt;br /&gt;
only member of which is the dimeric IFN-γ. Representatives of all&lt;br /&gt;
type I and type II IFNs are found in humans, except for IFN-τ,&lt;br /&gt;
which is found only in ruminant ungulates. There are 12 different human IFNs-α;each one&lt;br /&gt;
comprising a different subtype,although 14 different genes have&lt;br /&gt;
been identified, whereas human IFN-β, IFN-ω, and IFN-γare&lt;br /&gt;
encoded by single genes[1].&lt;br /&gt;
&lt;br /&gt;
Interferon-βhas two subtyes, interferon-β-1a and interferon-β-1b. Interferon-β-1a is naturally expressed in numerous cell types in human, including &lt;br /&gt;
fibroblasts, endothelial cells, epithelial cells and various leukocytes, however,Interferon-β-1b is produced in modified E. coli.&lt;br /&gt;
&lt;br /&gt;
Here is a jpg clearly illustrating IFNs categories.&lt;br /&gt;
[[Image:IFN categories.jpg]]&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;Structure info. of IFNβ-1a&#039;&#039;&#039;==&lt;br /&gt;
IFNβ-1a consisting of 166 amino acids, around 20KDa. It has 5 helixs.&lt;br /&gt;
&amp;lt;Structure load=&#039;1au1&#039; size=&#039;500&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;IFN structure from PDB&#039; scene=&#039;IFN scene_structure&#039; /&amp;gt;&lt;br /&gt;
&amp;lt;scene name=&#039;56/566498/Ifn_beta_1a_scene_structure/1&#039;&amp;gt;IFN beta 1a structure&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;IFNβ-1a biological activity and therapeutic effects&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
IFNβ-1a as well as other family of IFNs has a variety of biological activities, inluding antiviral, antiproliferative, and immune modulatory activities in response to biological and chemical stimuli[2]. &lt;br /&gt;
&lt;br /&gt;
IFNβ-1a is mainly used to treat relapsing forms of multiple sclerosis(MS).&lt;br /&gt;
MS is a life-long disease that affects your nervous system &lt;br /&gt;
by destroying the protective covering (myelin) that surrounds&lt;br /&gt;
your nerve fibers.&lt;br /&gt;
The commercial available drug format is [http://http://www.avonex.com/ Avonex].(Please refer to the drug guide before using it)&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;Mechanism of action for IFNβ-1a&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The IFNβreceptor, signaling cascade and gene regulation&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
The IFNβreceptor is composed of 2 required chains—a signaling&lt;br /&gt;
chain, IFNAR1, and a binding chain, IFNAR2. Both IFNAR1 and&lt;br /&gt;
IFNAR2 are constitutively expressed on the surface of virtually all cells. IFNβcan bind to IFNAR2 alone, but can bind to IFNAR1 only in&lt;br /&gt;
the presence of IFNAR2. The strength of IFNβbinding to its&lt;br /&gt;
receptor is much higher when both subunits are present.&lt;br /&gt;
Knockout experiments indicate that both IFNAR1 and IFNAR2 are&lt;br /&gt;
required for IFNβ activity, but it remains uncertain&lt;br /&gt;
whether there are auxiliary receptors or alternative receptor/&lt;br /&gt;
signaling complexes in some cell types.&lt;br /&gt;
The current view of events leading to IFNβbiological activity is&lt;br /&gt;
as follows: 1) IFN binds to the extracellular domain of&lt;br /&gt;
IFNAR2. 2) IFNAR1 then engages with the IFNβ–IFNAR2 complex,&lt;br /&gt;
forming the high-affinity receptor–ligand complex and allowing&lt;br /&gt;
the intracellular domains of the two receptor chains and&lt;br /&gt;
associated proteins to interact. 3) This interaction, which includes&lt;br /&gt;
JAK1 (associated with IFNAR2) and Tyk2 (associated with IFNAR1),&lt;br /&gt;
results in a cascade of phosphorylation events that leads to&lt;br /&gt;
activation of STATS. 4) Activated STATS form a complex with other&lt;br /&gt;
cytoplasmic proteins, which then translocate into the nucleus to&lt;br /&gt;
bind to Interferon Sensitive Response Elements (ISRE), transcriptional control regions which are upstream of many IFN regulated&lt;br /&gt;
genes. 5) This ISRE binding results in transcriptional regulation&lt;br /&gt;
(both induction and inhibition) of &amp;gt;1000 genes.&lt;br /&gt;
Thus, IFN regulates expression of a myriad of genes. While the&lt;br /&gt;
function of some of these genes is clear (e.g. the antiviral product&lt;br /&gt;
MxA), the specific transcripts mediating therapeutic benefit of&lt;br /&gt;
IFNβin MS are unknown. This is, in part, due to the complexity and&lt;br /&gt;
heterogeneity of MS, but also because IFNβis an agonist that can&lt;br /&gt;
induce the expression not only of ISRE regulated genes, but&lt;br /&gt;
through newly expressed transcription factors, can induce or&lt;br /&gt;
inhibit subsequent waves of gene expression. In addition, some&lt;br /&gt;
IFNβregulated proteins, which include cytokines and chemokines,&lt;br /&gt;
can alter the level or function of particular cell populations. The&lt;br /&gt;
resulting multifaceted biological response is in contrast to&lt;br /&gt;
therapies such as monoclonal antibodies that have a much more&lt;br /&gt;
specific molecular target[2-9].&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;Reference&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
[1] R. Arduini, K. Strauch, L. Rukel etal.Characterization of a soluble ternary complex formed&lt;br /&gt;
between human interferon-b-1a and its receptor chains&#039;&#039;Protein Science&#039;&#039; (1999),&#039;&#039;8&#039;&#039;:1867–1877&lt;br /&gt;
&lt;br /&gt;
[2] T. Taniguchi, A. Takaoka, The interferon-alpha/beta system in&lt;br /&gt;
antiviral responses: a multimodal machinery of gene regulation&lt;br /&gt;
by the IRF family of transcription factors, Curr. Opin. Immunol.&lt;br /&gt;
14 (1) (Feb 2002) 111–116.&lt;br /&gt;
&lt;br /&gt;
[3] K. Kasama, J. Utsumi, E. Matsuo-Ogawa, T. Nagahata, Y. Kagawa,&lt;br /&gt;
S. Yamazaki, et al., Pharmacokinetics and biologic activities of&lt;br /&gt;
human native and asialointerferon-beta s, J. Interferon Cytokine&lt;br /&gt;
Res. 15 (5) (May 1995) 407–415.&lt;br /&gt;
&lt;br /&gt;
[4] L. Runkel, W. Meier, R.B. Pepinsky, M. Karpusas, A. Whitty,&lt;br /&gt;
K. Kimball, et al., Structural and functional differences between&lt;br /&gt;
glycosylated and non-glycosylated forms of human&lt;br /&gt;
interferon-beta (IFN-beta), Pharm. Res. 15 (4) (Apr 1998)&lt;br /&gt;
641–649.&lt;br /&gt;
&lt;br /&gt;
[5] R.M. Arduini, K.L. Strauch, L.A. Runkel, M.M. Carlson, X.&lt;br /&gt;
Hronowski, S.F. Foley, et al., Characterization of a soluble&lt;br /&gt;
ternary complex formed between human interferon-beta-1a&lt;br /&gt;
and its receptor chains, Protein Sci. 8 (9) (Sep 1999)&lt;br /&gt;
1867–1877.&lt;br /&gt;
&lt;br /&gt;
[6] G. Uze, G. Schreiber, J. Piehler, S. Pellegrini, The receptor of the&lt;br /&gt;
type I interferon family, Curr. Top. Microbiol. Immunol. 316&lt;br /&gt;
(2007) 71–95.&lt;br /&gt;
&lt;br /&gt;
[7] C.M. Cleary, R.J. Donnelly, J. Soh, T.M. Mariano, S. Pestka,&lt;br /&gt;
Knockout and reconstitution of a functional human type I&lt;br /&gt;
interferon receptor complex, J. Biol. Chem. 269 (29)&lt;br /&gt;
(Jul 22 1994) 18747–18749.&lt;br /&gt;
&lt;br /&gt;
[8] J. Kumaran, O.R. Colamonici, E.N. Fish, Structure–function study&lt;br /&gt;
of the extracellular domain of the human type I interferon&lt;br /&gt;
receptor (IFNAR)-1 subunit, J. Interferon Cytokine Res. 20 (5)&lt;br /&gt;
(May 2000) 479–485.&lt;br /&gt;
&lt;br /&gt;
[9] J. Ghislain, G. Sussman, S. Goelz, L.E. Ling, E.N. Fish, Configuration&lt;br /&gt;
of the interferon-alpha/beta receptor complex determines the&lt;br /&gt;
context of the biological response, J. Biol. Chem. 270 (37)&lt;br /&gt;
(Sep 15 1995) 21785–21792.&lt;/div&gt;</summary>
		<author><name>Chengfeng Ren</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=User:Chengfeng_Ren/IFN_beta_1a&amp;diff=1878683</id>
		<title>User:Chengfeng Ren/IFN beta 1a</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=User:Chengfeng_Ren/IFN_beta_1a&amp;diff=1878683"/>
		<updated>2013-12-19T04:49:26Z</updated>

		<summary type="html">&lt;p&gt;Chengfeng Ren: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;==&#039;&#039;&#039;IFN Categories and IFNβ-1a sources&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
Interferons (IFNs) are a family of helical cytokines that mediate&lt;br /&gt;
antiviral, antiproliferative, and immune modulatory activities in&lt;br /&gt;
response to biological and chemical stimuli. Two types of IFN are recognized on   &lt;br /&gt;
the basis of their physical and biological properties; type I, which   &lt;br /&gt;
contains the monomeric IFNs-α,-β,-τ, and -ω, and type II, the&lt;br /&gt;
only member of which is the dimeric IFN-γ. Representatives of all&lt;br /&gt;
type I and type II IFNs are found in humans, except for IFN-τ,&lt;br /&gt;
which is found only in ruminant ungulates. There are 12 different human IFNs-α;each one&lt;br /&gt;
comprising a different subtype,although 14 different genes have&lt;br /&gt;
been identified, whereas human IFN-β, IFN-ω, and IFN-γare&lt;br /&gt;
encoded by single genes[1].&lt;br /&gt;
&lt;br /&gt;
Interferon-βhas two subtyes, interferon-β-1a and interferon-β-1b. Interferon-β-1a is naturally expressed in numerous cell types in human, including &lt;br /&gt;
fibroblasts, endothelial cells, epithelial cells and various leukocytes, however,Interferon-β-1b is produced in modified E. coli.&lt;br /&gt;
&lt;br /&gt;
Here is a jpg clearly illustrating IFNs categories.&lt;br /&gt;
[[Image:IFN categories.jpg]]&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;Structure info. of IFNβ-1a&#039;&#039;&#039;==&lt;br /&gt;
IFNβ-1a consisting of 166 amino acids, around 20KDa. It has 5 helixs.&lt;br /&gt;
&amp;lt;Structure load=&#039;1au1&#039; size=&#039;500&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;IFN structure from PDB&#039; scene=&#039;IFN scene_structure&#039; /&amp;gt;&lt;br /&gt;
&amp;lt;scene name=&#039;56/566498/Ifn_beta_1a_scene_structure/1&#039;&amp;gt;IFN beta 1a structure&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;IFNβ-1a biological activity and therapeutic effects&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
IFNβ-1a as well as other family of IFNs has a variety of biological activities, inluding antiviral, antiproliferative, and immune modulatory activities in response to biological and chemical stimuli[2]. &lt;br /&gt;
&lt;br /&gt;
IFNβ-1a is mainly used to treat relapsing forms of multiple sclerosis(MS).&lt;br /&gt;
MS is a life-long disease that affects your nervous system &lt;br /&gt;
by destroying the protective covering (myelin) that surrounds&lt;br /&gt;
your nerve fibers.&lt;br /&gt;
The commercial available drug format is [http://http://www.avonex.com/ Avonex].(Please refer to the drug guide before using it)&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;Mechanism of action for IFNβ-1a&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The IFNβreceptor, signaling cascade and gene regulation&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
The IFNβreceptor is composed of 2 required chains—a signaling&lt;br /&gt;
chain, IFNAR1, and a binding chain, IFNAR2. Both IFNAR1 and&lt;br /&gt;
IFNAR2 are constitutively expressed on the surface of virtually all cells. IFNβcan bind to IFNAR2 alone, but can bind to IFNAR1 only in&lt;br /&gt;
the presence of IFNAR2. The strength of IFNβbinding to its&lt;br /&gt;
receptor is much higher when both subunits are present.&lt;br /&gt;
Knockout experiments indicate that both IFNAR1 and IFNAR2 are&lt;br /&gt;
required for IFNβ activity, but it remains uncertain&lt;br /&gt;
whether there are auxiliary receptors or alternative receptor/&lt;br /&gt;
signaling complexes in some cell types.&lt;br /&gt;
The current view of events leading to IFNβbiological activity is&lt;br /&gt;
as follows: 1) IFN binds to the extracellular domain of&lt;br /&gt;
IFNAR2. 2) IFNAR1 then engages with the IFNβ–IFNAR2 complex,&lt;br /&gt;
forming the high-affinity receptor–ligand complex and allowing&lt;br /&gt;
the intracellular domains of the two receptor chains and&lt;br /&gt;
associated proteins to interact. 3) This interaction, which includes&lt;br /&gt;
JAK1 (associated with IFNAR2) and Tyk2 (associated with IFNAR1),&lt;br /&gt;
results in a cascade of phosphorylation events that leads to&lt;br /&gt;
activation of STATS. 4) Activated STATS form a complex with other&lt;br /&gt;
cytoplasmic proteins, which then translocate into the nucleus to&lt;br /&gt;
bind to Interferon Sensitive Response Elements (ISRE), transcriptional control regions which are upstream of many IFN regulated&lt;br /&gt;
genes. 5) This ISRE binding results in transcriptional regulation&lt;br /&gt;
(both induction and inhibition) of &amp;gt;1000 genes.&lt;br /&gt;
Thus, IFN regulates expression of a myriad of genes. While the&lt;br /&gt;
function of some of these genes is clear (e.g. the antiviral product&lt;br /&gt;
MxA), the specific transcripts mediating therapeutic benefit of&lt;br /&gt;
IFNβin MS are unknown. This is, in part, due to the complexity and&lt;br /&gt;
heterogeneity of MS, but also because IFNβis an agonist that can&lt;br /&gt;
induce the expression not only of ISRE regulated genes, but&lt;br /&gt;
through newly expressed transcription factors, can induce or&lt;br /&gt;
inhibit subsequent waves of gene expression. In addition, some&lt;br /&gt;
IFNβregulated proteins, which include cytokines and chemokines,&lt;br /&gt;
can alter the level or function of particular cell populations. The&lt;br /&gt;
resulting multifaceted biological response is in contrast to&lt;br /&gt;
therapies such as monoclonal antibodies that have a much more&lt;br /&gt;
specific molecular target[2-9].&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;Reference&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
[1] R. Arduini, K. Strauch, L. Rukel etal.Characterization of a soluble ternary complex formed&lt;br /&gt;
between human interferon-b-1a and its receptor chains&#039;&#039;Protein Science&#039;&#039; (1999),&#039;&#039;8&#039;&#039;:1867–1877&lt;br /&gt;
&lt;br /&gt;
[2] T. Taniguchi, A. Takaoka, The interferon-alpha/beta system in&lt;br /&gt;
antiviral responses: a multimodal machinery of gene regulation&lt;br /&gt;
by the IRF family of transcription factors, Curr. Opin. Immunol.&lt;br /&gt;
14 (1) (Feb 2002) 111–116.&lt;br /&gt;
&lt;br /&gt;
[3] K. Kasama, J. Utsumi, E. Matsuo-Ogawa, T. Nagahata, Y. Kagawa,&lt;br /&gt;
S. Yamazaki, et al., Pharmacokinetics and biologic activities of&lt;br /&gt;
human native and asialointerferon-beta s, J. Interferon Cytokine&lt;br /&gt;
Res. 15 (5) (May 1995) 407–415.&lt;br /&gt;
&lt;br /&gt;
[4] L. Runkel, W. Meier, R.B. Pepinsky, M. Karpusas, A. Whitty,&lt;br /&gt;
K. Kimball, et al., Structural and functional differences between&lt;br /&gt;
glycosylated and non-glycosylated forms of human&lt;br /&gt;
interferon-beta (IFN-beta), Pharm. Res. 15 (4) (Apr 1998)&lt;br /&gt;
641–649.&lt;br /&gt;
&lt;br /&gt;
[5] R.M. Arduini, K.L. Strauch, L.A. Runkel, M.M. Carlson, X.&lt;br /&gt;
Hronowski, S.F. Foley, et al., Characterization of a soluble&lt;br /&gt;
ternary complex formed between human interferon-beta-1a&lt;br /&gt;
and its receptor chains, Protein Sci. 8 (9) (Sep 1999)&lt;br /&gt;
1867–1877.&lt;br /&gt;
&lt;br /&gt;
[6] G. Uze, G. Schreiber, J. Piehler, S. Pellegrini, The receptor of the&lt;br /&gt;
type I interferon family, Curr. Top. Microbiol. Immunol. 316&lt;br /&gt;
(2007) 71–95.&lt;br /&gt;
&lt;br /&gt;
[7] C.M. Cleary, R.J. Donnelly, J. Soh, T.M. Mariano, S. Pestka,&lt;br /&gt;
Knockout and reconstitution of a functional human type I&lt;br /&gt;
interferon receptor complex, J. Biol. Chem. 269 (29)&lt;br /&gt;
(Jul 22 1994) 18747–18749.&lt;br /&gt;
&lt;br /&gt;
[8] J. Kumaran, O.R. Colamonici, E.N. Fish, Structure–function study&lt;br /&gt;
of the extracellular domain of the human type I interferon&lt;br /&gt;
receptor (IFNAR)-1 subunit, J. Interferon Cytokine Res. 20 (5)&lt;br /&gt;
(May 2000) 479–485.&lt;br /&gt;
&lt;br /&gt;
[9] J. Ghislain, G. Sussman, S. Goelz, L.E. Ling, E.N. Fish, Configuration&lt;br /&gt;
of the interferon-alpha/beta receptor complex determines the&lt;br /&gt;
context of the biological response, J. Biol. Chem. 270 (37)&lt;br /&gt;
(Sep 15 1995) 21785–21792.&lt;/div&gt;</summary>
		<author><name>Chengfeng Ren</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=User:Chengfeng_Ren/IFN_beta_1a&amp;diff=1878682</id>
		<title>User:Chengfeng Ren/IFN beta 1a</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=User:Chengfeng_Ren/IFN_beta_1a&amp;diff=1878682"/>
		<updated>2013-12-19T04:46:46Z</updated>

		<summary type="html">&lt;p&gt;Chengfeng Ren: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;==&#039;&#039;&#039;IFN Categories and IFNβ-1a sources&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
Interferons (IFNs) are a family of helical cytokines that mediate&lt;br /&gt;
antiviral, antiproliferative, and immune modulatory activities in&lt;br /&gt;
response to biological and chemical stimuli. Two types of IFN are recognized on   &lt;br /&gt;
the basis of their physical and biological properties; type I, which   &lt;br /&gt;
contains the monomeric IFNs-α,-β,-τ, and -ω, and type II, the&lt;br /&gt;
only member of which is the dimeric IFN-γ. Representatives of all&lt;br /&gt;
type I and type II IFNs are found in humans, except for IFN-τ,&lt;br /&gt;
which is found only in ruminant ungulates. There are 12 different human IFNs-α;each one&lt;br /&gt;
comprising a different subtype,although 14 different genes have&lt;br /&gt;
been identified, whereas human IFN-β, IFN-ω, and IFN-γare&lt;br /&gt;
encoded by single genes[1].&lt;br /&gt;
&lt;br /&gt;
Interferon-βhas two subtyes, interferon-β-1a and interferon-β-1b. Interferon-β-1a is naturally expressed in numerous cell types in human, including &lt;br /&gt;
fibroblasts, endothelial cells, epithelial cells and various leukocytes, however,Interferon-β-1b is produced in modified E. coli.&lt;br /&gt;
&lt;br /&gt;
Here is a jpg clearly illustrating IFNs categories.&lt;br /&gt;
[[Image:IFN categories.jpg]]&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;Structure info. of IFNβ-1a&#039;&#039;&#039;==&lt;br /&gt;
IFNβ-1a consisting of 166 amino acids, around 20KDa. It has 5 helixs.&lt;br /&gt;
&amp;lt;Structure load=&#039;1au1&#039; size=&#039;500&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;IFN structure from PDB&#039; scene=&#039;IFN scene_structure&#039; /&amp;gt;&lt;br /&gt;
&amp;lt;scene name=&#039;56/566498/Ifn_beta_1a_scene_structure/1&#039;&amp;gt;IFN beta 1a structure&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;IFNβ-1a biological activity and therapeutic effects&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
IFNβ-1a as well as other family of IFNs has a variety of biological activities, inluding antiviral, antiproliferative, and immune modulatory activities in response to biological and chemical stimuli[2]. &lt;br /&gt;
&lt;br /&gt;
IFNβ-1a is mainly used to treat relapsing forms of multiple sclerosis(MS).&lt;br /&gt;
MS is a life-long disease that affects your nervous system &lt;br /&gt;
by destroying the protective covering (myelin) that surrounds&lt;br /&gt;
your nerve fibers.&lt;br /&gt;
The commercial available drug format is [http://http://www.avonex.com/ Avonex].(Please refer to the drug guide before using it)&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;Mechanism of action for IFNβ-1a&#039;&#039;&#039;==&lt;br /&gt;
IFNβis encoded by a single gene&lt;br /&gt;
with no introns (and hence, no splice variants), and no reported&lt;br /&gt;
polymorphisms. Although IFNβwas originally called fibroblast&lt;br /&gt;
IFN–because fibroblasts could be induced to produce it in vitro–&lt;br /&gt;
numerous other cell types can express IFNβ, including endothelial&lt;br /&gt;
cells, epithelial cells and various leukocytes. Unlike IFNα,&lt;br /&gt;
where a particular subset of dendritic cells appears to be one of the&lt;br /&gt;
primary in vivo sources, a physiological source of IFNβhas not&lt;br /&gt;
been identified. Endogenous IFNβis not generally detected at&lt;br /&gt;
significant levels in humans. So called “natural” human IFNβ&lt;br /&gt;
(expressed by fibroblasts in vitro), is glycosylated at one site with&lt;br /&gt;
an N-linked complex carbohydrate, the exact structure of which&lt;br /&gt;
can be influenced by growth conditions and the cell type&lt;br /&gt;
producing the IFN. While important for monomer stability,&lt;br /&gt;
solubility and, perhaps biodistribution, the carbohydrate moiety&lt;br /&gt;
does not appear to be required for receptor binding.&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The IFNβreceptor, signaling cascade and gene regulation&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
The IFNβreceptor is composed of 2 required chains—a signaling&lt;br /&gt;
chain, IFNAR1, and a binding chain, IFNAR2. Both IFNAR1 and&lt;br /&gt;
IFNAR2 are constitutively expressed on the surface of virtually all cells. IFNβcan bind to IFNAR2 alone, but can bind to IFNAR1 only in&lt;br /&gt;
the presence of IFNAR2. The strength of IFNβbinding to its&lt;br /&gt;
receptor is much higher when both subunits are present.&lt;br /&gt;
Knockout experiments indicate that both IFNAR1 and IFNAR2 are&lt;br /&gt;
required for IFNβ activity, but it remains uncertain&lt;br /&gt;
whether there are auxiliary receptors or alternative receptor/&lt;br /&gt;
signaling complexes in some cell types.&lt;br /&gt;
The current view of events leading to IFNβbiological activity is&lt;br /&gt;
as follows: 1) IFN binds to the extracellular domain of&lt;br /&gt;
IFNAR2. 2) IFNAR1 then engages with the IFNβ–IFNAR2 complex,&lt;br /&gt;
forming the high-affinity receptor–ligand complex and allowing&lt;br /&gt;
the intracellular domains of the two receptor chains and&lt;br /&gt;
associated proteins to interact. 3) This interaction, which includes&lt;br /&gt;
JAK1 (associated with IFNAR2) and Tyk2 (associated with IFNAR1),&lt;br /&gt;
results in a cascade of phosphorylation events that leads to&lt;br /&gt;
activation of STATS. 4) Activated STATS form a complex with other&lt;br /&gt;
cytoplasmic proteins, which then translocate into the nucleus to&lt;br /&gt;
bind to Interferon Sensitive Response Elements (ISRE), transcriptional control regions which are upstream of many IFN regulated&lt;br /&gt;
genes. 5) This ISRE binding results in transcriptional regulation&lt;br /&gt;
(both induction and inhibition) of &amp;gt;1000 genes.&lt;br /&gt;
Thus, IFN regulates expression of a myriad of genes. While the&lt;br /&gt;
function of some of these genes is clear (e.g. the antiviral product&lt;br /&gt;
MxA), the specific transcripts mediating therapeutic benefit of&lt;br /&gt;
IFNβin MS are unknown. This is, in part, due to the complexity and&lt;br /&gt;
heterogeneity of MS, but also because IFNβis an agonist that can&lt;br /&gt;
induce the expression not only of ISRE regulated genes, but&lt;br /&gt;
through newly expressed transcription factors, can induce or&lt;br /&gt;
inhibit subsequent waves of gene expression. In addition, some&lt;br /&gt;
IFNβregulated proteins, which include cytokines and chemokines,&lt;br /&gt;
can alter the level or function of particular cell populations. The&lt;br /&gt;
resulting multifaceted biological response is in contrast to&lt;br /&gt;
therapies such as monoclonal antibodies that have a much more&lt;br /&gt;
specific molecular target[2-9].&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;Reference&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
[1] R. Arduini, K. Strauch, L. Rukel etal.Characterization of a soluble ternary complex formed&lt;br /&gt;
between human interferon-b-1a and its receptor chains&#039;&#039;Protein Science&#039;&#039; (1999),&#039;&#039;8&#039;&#039;:1867–1877&lt;br /&gt;
&lt;br /&gt;
[2] T. Taniguchi, A. Takaoka, The interferon-alpha/beta system in&lt;br /&gt;
antiviral responses: a multimodal machinery of gene regulation&lt;br /&gt;
by the IRF family of transcription factors, Curr. Opin. Immunol.&lt;br /&gt;
14 (1) (Feb 2002) 111–116.&lt;br /&gt;
&lt;br /&gt;
[3] K. Kasama, J. Utsumi, E. Matsuo-Ogawa, T. Nagahata, Y. Kagawa,&lt;br /&gt;
S. Yamazaki, et al., Pharmacokinetics and biologic activities of&lt;br /&gt;
human native and asialointerferon-beta s, J. Interferon Cytokine&lt;br /&gt;
Res. 15 (5) (May 1995) 407–415.&lt;br /&gt;
&lt;br /&gt;
[4] L. Runkel, W. Meier, R.B. Pepinsky, M. Karpusas, A. Whitty,&lt;br /&gt;
K. Kimball, et al., Structural and functional differences between&lt;br /&gt;
glycosylated and non-glycosylated forms of human&lt;br /&gt;
interferon-beta (IFN-beta), Pharm. Res. 15 (4) (Apr 1998)&lt;br /&gt;
641–649.&lt;br /&gt;
&lt;br /&gt;
[5] R.M. Arduini, K.L. Strauch, L.A. Runkel, M.M. Carlson, X.&lt;br /&gt;
Hronowski, S.F. Foley, et al., Characterization of a soluble&lt;br /&gt;
ternary complex formed between human interferon-beta-1a&lt;br /&gt;
and its receptor chains, Protein Sci. 8 (9) (Sep 1999)&lt;br /&gt;
1867–1877.&lt;br /&gt;
&lt;br /&gt;
[6] G. Uze, G. Schreiber, J. Piehler, S. Pellegrini, The receptor of the&lt;br /&gt;
type I interferon family, Curr. Top. Microbiol. Immunol. 316&lt;br /&gt;
(2007) 71–95.&lt;br /&gt;
&lt;br /&gt;
[7] C.M. Cleary, R.J. Donnelly, J. Soh, T.M. Mariano, S. Pestka,&lt;br /&gt;
Knockout and reconstitution of a functional human type I&lt;br /&gt;
interferon receptor complex, J. Biol. Chem. 269 (29)&lt;br /&gt;
(Jul 22 1994) 18747–18749.&lt;br /&gt;
&lt;br /&gt;
[8] J. Kumaran, O.R. Colamonici, E.N. Fish, Structure–function study&lt;br /&gt;
of the extracellular domain of the human type I interferon&lt;br /&gt;
receptor (IFNAR)-1 subunit, J. Interferon Cytokine Res. 20 (5)&lt;br /&gt;
(May 2000) 479–485.&lt;br /&gt;
&lt;br /&gt;
[9] J. Ghislain, G. Sussman, S. Goelz, L.E. Ling, E.N. Fish, Configuration&lt;br /&gt;
of the interferon-alpha/beta receptor complex determines the&lt;br /&gt;
context of the biological response, J. Biol. Chem. 270 (37)&lt;br /&gt;
(Sep 15 1995) 21785–21792.&lt;/div&gt;</summary>
		<author><name>Chengfeng Ren</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=CBI_Molecules&amp;diff=1873251</id>
		<title>CBI Molecules</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=CBI_Molecules&amp;diff=1873251"/>
		<updated>2013-12-06T19:21:00Z</updated>

		<summary type="html">&lt;p&gt;Chengfeng Ren: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;These are molecules under study by members of the [http://www.umass.edu/cbi/ University of Massachusetts Amherst Chemistry-Biology Interface Program].&lt;br /&gt;
Many of the  molecules we study are featured at the [http://www.molecularplayground.org/ Molecular Playground] (see also [[Molecular Playground|Molecular Playground in Proteopedia]]). Follow the links below to read nontechnical descriptions, in Proteopedia, of these molecules.&lt;br /&gt;
&lt;br /&gt;
UMass CBI Members, add your molecules to the list (which is alphabetical by CBI research mentor); follow the instructions below the list.&lt;br /&gt;
&lt;br /&gt;
Fall 2013: CBI Molecules are due 12/4/13 and should be added at the TOP of the list from your lab. Label it as &amp;quot;in progress&amp;quot; until you are finished, and then as &amp;quot;New 2013&amp;quot; or &amp;quot;Revised 2013&amp;quot;. For those editing an existing CBI Molecule, start from that entry so that it retains the full author list of all authors that contributed (or include credits to the original page and authors if it does not).&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
==Molecules==&lt;br /&gt;
&#039;&#039;&#039;** Designates CBI Molecules Featured on [http://http://www.umass.edu/cbi/ CBI website]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
Bhatia Lab&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Alginate-Fall2011]]&#039;&#039;&#039;, Joe White, David Griffin&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Alginate-Fall2010]]&#039;&#039;&#039;, Joe White, David Griffin&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Poly(ethylene glycol)]]&#039;&#039;&#039;, Erika M. Saffer&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[http://chamberslab.com/wp/ Chambers Lab]&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Glutamate Receptor]]&#039;&#039;&#039;,  Amanda Hussey, Steve McCarron, Rosie Combs-Bachmann, Mariel Feliciano&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[http://www.chem.umass.edu/~chenlab/index.HTML Chen Lab]&lt;br /&gt;
&lt;br /&gt;
: New Fall 2012!! &#039;&#039;&#039;[[Molecular Playground/OmpG]]&#039;&#039;&#039;, Christina Chisholm&lt;br /&gt;
: New Fall 2013!! &#039;&#039;&#039;[[Molecular Playground/ClyA]]&#039;&#039;&#039;, Bib Yang&lt;br /&gt;
&lt;br /&gt;
[http://openwetware.org/wiki/Chien Chien Lab]&lt;br /&gt;
&lt;br /&gt;
New Fall 2013! : **&#039;&#039;&#039;[[Molecular Playground/Homo-dimeric RcdA]]&#039;&#039;&#039;, Kamal K. Joshi &lt;br /&gt;
&lt;br /&gt;
: **&#039;&#039;&#039;[[Molecular Playground/Hexameric ClpX]]&#039;&#039;&#039;, Joanne Lau &lt;br /&gt;
:: Best CBI Molecule 2011&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/DNA replication initiator DnaA]]&#039;&#039;&#039;, Jing Liu&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Forbes Lab&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/CheR]]&#039;&#039;&#039;,  Miaomin Zhang&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/RBP]]&#039;&#039;&#039;,  Jan Panteli&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/TRAIL]]&#039;&#039;&#039;,  Charley Swofford&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[http://www.biochem.umass.edu/garman/index.html Garman Lab]&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Human Protective Protein Cathepsin A]]&#039;&#039;&#039;, Yadilette Rivera-Colon&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Human PPCA]]&#039;&#039;&#039;, Nilima Kolli&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[http://people.chem.umass.edu/gieraschlab/ Gierasch Lab]&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[CRABP I ( Cellular Retinoic Acid Binding Protein )|Molecular Playground/CRABP I]]&#039;&#039;&#039;, Kristine Faye Pobre, Mylene Ferrolino,Mangai Periasamy&lt;br /&gt;
:: Best Overall CBI Molecule 2010&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/CRABP I (Cellular Retinoic Acid Binding Protein)]]&#039;&#039;&#039;, Gustavo Elberto Epalza Sanchez&lt;br /&gt;
(compare this to the previous version above to see what&#039;s new)&lt;br /&gt;
&lt;br /&gt;
: **&#039;&#039;&#039;[[Molecular_Playground/DHFR]]&#039;&#039;&#039;, Karan Hingorani &lt;br /&gt;
:: Best CBI Molecule 2012&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[http://people.chem.umass.edu/jhardy/ Hardy Lab]&lt;br /&gt;
&lt;br /&gt;
: New Fall 2013!! &#039;&#039;&#039;[[Molecular Playground/Executioner Caspase-7]]&#039;&#039;&#039;, Derek MacPherson, Maureen E. Hill&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/[[Caspase-3 Regulatory Mechanisms]]&#039;&#039;&#039;, Scott Eron, Bay Serrano, Yunlong Zhao&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039; [[Molecular Playground/Caspase-6 and neurodegeneration]]&#039;&#039;&#039;, Kevin Buadlart Dagbay&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Caspase-7 Dynamics]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Caspase-9 Regulation]]&#039;&#039;&#039;, Kristen Huber&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Caspase-6 (new)]]&#039;&#039;&#039;, Elih Velazquez&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Influenza A M2 transmembrane domain]]&#039;&#039;&#039;, Samantha Nicholls&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Dengue Virus Protease]]&#039;&#039;&#039;, Muslum Yildiz&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Hebert Lab&lt;br /&gt;
&lt;br /&gt;
: New Fall 2013!! &#039;&#039;&#039;[[Molecular_Playground/Hsp70-Hsp90]]&#039;&#039;&#039;,  Jill Graham&lt;br /&gt;
: New Fall 2012!! &#039;&#039;&#039;[[Molecular_Playground/ERDj5]]&#039;&#039;&#039;,  Lydia Lamriben&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Saposin C]]&#039;&#039;&#039;, Abla Tannous&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular_Playground/ERMan1]]&#039;&#039;&#039;,  Johan Sunryd&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[http://people.biochem.umass.edu/aheuck/aph.html Heuck Lab]&lt;br /&gt;
&lt;br /&gt;
: Updated Fall 2012!! &#039;&#039;&#039;[[Molecular_Playground/Pcr H]]&#039;&#039;&#039;,  Fabian Romano, Carolina Morell-Pérez&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[http://people.chem.umass.edu/mholden/ Holden Lab]&lt;br /&gt;
&lt;br /&gt;
: New Fall 2012!! &#039;&#039;&#039;[[Molecular Playground/Protective Antigen]]&#039;&#039;&#039;,  Jing Huang&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[http://www.chem.umass.edu/people/kaltashovlab/ Kaltashov Lab]&lt;br /&gt;
&lt;br /&gt;
New 2013! &#039;&#039;&#039;[http://proteopedia.org/wiki/index.php/Chengfeng_Ren Molecular Playground/Inteferon]&#039;&#039;&#039;, Chengfeng Ren&lt;br /&gt;
&lt;br /&gt;
: Updated Fall 2012!! &#039;&#039;&#039; [[Molecular Playground/Transferrin]]&#039;&#039;&#039;, Khaja Muneeruddin, Jake Pawlowski&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Velaglucerase]]&#039;&#039;&#039;, Adriana Kita&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Knapp lab&lt;br /&gt;
&lt;br /&gt;
: Updated Fall 2013!! &#039;&#039;&#039;[[Molecular Playground/FIH]]&#039;&#039;&#039;, Vanessa Chaplin, Cornelius Taabazuing, Breanne Holmes, John Hangasky&lt;br /&gt;
 &lt;br /&gt;
: Updated Fall 2012!! &#039;&#039;&#039;[[Molecular Playground/Prolyl Hydroxylase Domain (PHD) Enzyme]]&#039;&#039;&#039;, Cristina Martin, Serap Pektas&lt;br /&gt;
:: Best CBI Molecule Proteopedia Page 2010&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[http://people.chem.umass.edu/mmaroney/ Maroney Lab]&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Nickel Superoxide Dismutase]]&#039;&#039;&#039;, Carolyn Carr&lt;br /&gt;
: Updated Fall 2013!!  &#039;&#039;&#039;[[Molecular Playground/CsoR and RcnR]]&#039;&#039;&#039;, Heidi Hu, Carolyn Carr&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/HypA]]&#039;&#039;&#039;, Heidi Hu&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[http://www.chem.umass.edu/~cmartin/ Martin Lab]&lt;br /&gt;
&lt;br /&gt;
: **&#039;&#039;&#039;[[Molecular Playground/T7 RNAP Conformations]]&#039;&#039;&#039;, Luis E. Ramirez-Tapia &lt;br /&gt;
:: Best CBI Molecule 2011&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/T7 RNA Polymerase (7 mer int)]]&#039;&#039;&#039;, Ankit Vahia&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Human mtRNA pol]]&#039;&#039;&#039;, Ketan Mathavan &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[http://www.peytonlab.org/ Peyton Lab]&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/C-Raf]]&#039;&#039;&#039;, Thuy Nguyen&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/FAK]]&#039;&#039;&#039;, Dannielle Ryman&lt;br /&gt;
: New Fall 2013! &#039;&#039;&#039;[[Molecular Playground/MMP14]]&#039;&#039;&#039;, Lauren Jansen&lt;br /&gt;
&lt;br /&gt;
[http://roberts.openwetware.org/ Roberts Lab]&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Taxol]]&#039;&#039;&#039;,  Rohan Patil, Sarah Wilson&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Insulin]]&#039;&#039;&#039;, Whitney Stoppel&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[http://www.umass.edu/rotellogroup/ Rotello Lab]&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Reverse transcriptase|Molecular Playground/Reverse Transcriptase]]&#039;&#039;&#039;, Daniel Moyano-Marino&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Pancreatic Lipase]]&#039;&#039;&#039;,  Rui Tang&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular playground/Chymotrypsin]]&#039;&#039;&#039;,  Brad&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Targeting Peptide]]&#039;&#039;&#039;, David Solfiell&lt;br /&gt;
&lt;br /&gt;
[http://http://www.umass.edu/schiffman/  Schiffman Lab]&lt;br /&gt;
:New Fall 2013! &#039;&#039;&#039;[[Molecular Playground/Streptavidin]]&#039;&#039;&#039;, Katrina Rieger&lt;br /&gt;
&lt;br /&gt;
[https://elements.chem.umass.edu/schnarrlab/ Schnarr Lab] &lt;br /&gt;
&lt;br /&gt;
: New Fall 2012!! &#039;&#039;&#039;[[Molecular Playground/4&#039;-PHOSPHOPANTETHEINYL TRANSFERASE (Sfp)]]&#039;&#039;&#039;, Jon Amoroso, Gitanjeli Prasad, Lawrence Sheringham Borketey &lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[6-deoxyerythronolide_B_synthase_(DEBS)|Molecular Playground/6-Deoxyerythronolide B Synthase]]&#039;&#039;&#039;, Tsung-Yi Lin, Jon Amoroso, Lawrence Sheringham Borketey&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/ACP apo]]&#039;&#039;&#039;, Gitanjeli Prasad&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[http://www.biochem.umass.edu/faculty/danny-j-schnell Schnell Lab]&lt;br /&gt;
: New Fall 2012!! &#039;&#039;&#039;[[Molecular Playground/Tic40]]&#039;&#039;&#039;, Mine Canakci&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Tew Lab&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/HIV Tat]]&#039;&#039;&#039;, Brittany deRonde&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Thayumanavan Lab&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Lysozyme ]]&#039;&#039;&#039;, Daniella Gonzalez&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Beta-galactosidase]]&#039;&#039;&#039;, Judy Ventura&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[User:Krishna Reddy Ragupathi|Molecular Playground/Carbonic Anhydrase]]&#039;&#039;&#039;, Krishna Reddy Raghupathi&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[User:Rami Rajasekhar Reddy|Molecular Playground/Avidin]]&#039;&#039;&#039;, Rami Rajasekar Reddy&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Biotin binding avidin]]&#039;&#039;&#039;, Diego Amado &lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[User:Jiaming Zhuang|Molecular Playground/MMP12]]&#039;&#039;&#039;, Jiaming Zhuang&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039; [[User:Jing Guo|Molecular Playground/Gluconase]]&#039;&#039;&#039;, Jing Guo&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Glutathione Reductase]]&#039;&#039;&#039;, Reuben Chacko&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Thayumanavan &amp;amp; Vachet Labs&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Trypsin]]&#039;&#039;&#039;, Gladys Murage&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[http://people.chem.umass.edu/thompson/index.html Thompson] &amp;amp; [http://www.chem.umass.edu/~rmweis/weislab/ Weis] Labs&lt;br /&gt;
&lt;br /&gt;
: New Fall 2012!! &#039;&#039;&#039;[[Molecular Playground/CheA]]&#039;&#039;&#039;, Elizabeth R. Haglin&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Bacterial Chemotaxis Receptors]]&#039;&#039;&#039;, Lynmarie K. Thompson, Shiela M. Jones&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/cytoplasmic domain of a serine chemotaxis receptor]]&#039;&#039;&#039;,  Meili Yang&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Cytoplasmic domain of chemoreceptor of Thermotoga maritima]]&#039;&#039;&#039;,  Xuni Li&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[http://www.chem.umass.edu/~vachet/index.html Vachet Lab]&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular playground/beta 2 microglobulin]]&#039;&#039;&#039;,  Nick Borotto&lt;br /&gt;
:: Best CBI Molecule Jmol scenes 2010&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Myoglobin]]&#039;&#039;&#039;,  Yuping Zhou &lt;br /&gt;
&lt;br /&gt;
:&#039;&#039;&#039;[[Molecular Playground/ Copper-Zinc Superoxide Dismutase]]&#039;&#039;&#039;, Shaynah Browne&lt;br /&gt;
&lt;br /&gt;
: New Fall 2012!! &#039;&#039;&#039;[[Molecular Playground/Ubiquitin salt bridge discussion]]&#039;&#039;&#039;, Zhe Zhang&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Other Molecules of interest&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/PcrA Helicase]]&#039;&#039;&#039;, Luis E Ramirez-Tapia, [http://www.chem.umass.edu/~cmartin/ Martin Lab]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Other Laboratories&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/YKL-40]]&#039;&#039;&#039;, Ralph A. Francescone III, [http://www.bio.umass.edu/mcb/faculty/Shao.html Shao Lab]&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/BLG|Molecular Playground/β-lactoglobulin]]&#039;&#039;&#039;, Daniel Seeman, Dubin Lab&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/ADAM13]]&#039;&#039;&#039;, Genevieve Abbruzzese, Alfandari Lab&lt;br /&gt;
&lt;br /&gt;
==Instructions==&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The goal is for students to work collaboratively to create one excellent CBI Molecule for each CBI research group, to be featured on the CBI website.&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
Fall 2013: Complete steps 1-2 by 10/18, and bring your computer to the CBI Molecule Workshop on Wed 10/23 in ISB 321. &lt;br /&gt;
&lt;br /&gt;
A successful CBI Molecule will be an interesting, nontechnical description of a molecule related to your group&#039;s research. It should not be super long, but instead have multiple green scenes. Green scenes should clearly show an interesting feature and should be attractive. Use the green scenes to help you make interesting points about the molecule (do not try to describe every feature of the molecule). It&#039;s great if you can end with a brief statement about how it relates to your group&#039;s research goals.&lt;br /&gt;
&lt;br /&gt;
1. If you don&#039;t already have one, request a Proteopedia account and log in. &lt;br /&gt;
&lt;br /&gt;
2. Read through the rest of the instructions and look at any existing CBI Molecules from your research group. Talk with other Chalk Talk students in your research group and think about how you can make a new or improved CBI Molecule related to your group&#039;s research. Develop ideas for the scenes you wish to show. You will work learn how to make scenes during the workshop. &lt;br /&gt;
&lt;br /&gt;
3. Get started working in Proteopedia by using the links at [[Help:Contents]]. Make yourself a sandbox page: Enter &amp;quot;User:Your Name/Sandbox 1&amp;quot; (omit quotes) in the search box, then follow instructions to edit this page. Practice entering text, inserting a structure window with scrolling text (green 4-square button on the right), and creating a green scene. You can look at other Proteopedia pages in edit mode to see how different effects (like colored text) are achieved (but this won&#039;t show you how the scene effects are made). &lt;br /&gt;
&lt;br /&gt;
4. For those editing an existing CBI Molecule, start from that entry so that it retains the full author list of all authors that contributed. You are encouraged to collaborate on the CBI Molecules, but everyone will need to do some editing of the molecule so that they each appear as authors on the final list. If you are the sole student from your group enrolled in Chalk Talk and have not previously made a CBI Molecule, try to convince another group member who has previously made a CBI Molecule (see  list above) to join us for the workshop so that you can work together.&lt;br /&gt;
&lt;br /&gt;
5. Your final pages should be called &amp;quot;Molecular Playground/your molecule&amp;quot; and should have links on this CBI Molecule page -- put the new ones first on the list from your research group. Label them &amp;quot;in progress&amp;quot; until you are finished, and then &amp;quot;new 2013&amp;quot; or &amp;quot;revised 2013&amp;quot;.&lt;br /&gt;
&lt;br /&gt;
==Links to HELP pages==&lt;br /&gt;
Overview at [[Help:Contents ]]&lt;br /&gt;
&lt;br /&gt;
See also [[Help:Getting_Started_in_Proteopedia]] &lt;br /&gt;
&lt;br /&gt;
Videos showing how to use Proteopedia:&lt;br /&gt;
[[Proteopedia:Video_Guide]]&lt;br /&gt;
(Sometimes slow -- if you pause the video and wait awhile it will download and then you can play it without interruptions)&lt;br /&gt;
&lt;br /&gt;
[[Proteopedia:DIY:Scenes|Proteopedia Scenes: Do It Yourself]]&lt;br /&gt;
gives succinct step by step instructions on how to create a molecular scene.&lt;br /&gt;
&lt;br /&gt;
A powerpoint-like set of slides that walks a user through the process of creating a new page and a new molecular scene/green link.&lt;br /&gt;
[http://www.proteopedia.org/wiki/images/1/1b/2009_07_13_Proteopedia_Workshop.pdf Proteopedia Workshop Slides]&lt;br /&gt;
&lt;br /&gt;
[[Proteopedia:Guidelines for Ethical Writing]].&lt;br /&gt;
Please pay attention to the section about images. There are links to examples of images re-used with explicit permission.&lt;br /&gt;
&lt;br /&gt;
For other help resources, click on [[Help:Contents|Help]] in the &#039;&#039;navigation&#039;&#039; box at the upper left of every page in Proteopedia.&lt;/div&gt;</summary>
		<author><name>Chengfeng Ren</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=CBI_Molecules&amp;diff=1873246</id>
		<title>CBI Molecules</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=CBI_Molecules&amp;diff=1873246"/>
		<updated>2013-12-06T19:18:56Z</updated>

		<summary type="html">&lt;p&gt;Chengfeng Ren: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;These are molecules under study by members of the [http://www.umass.edu/cbi/ University of Massachusetts Amherst Chemistry-Biology Interface Program].&lt;br /&gt;
Many of the  molecules we study are featured at the [http://www.molecularplayground.org/ Molecular Playground] (see also [[Molecular Playground|Molecular Playground in Proteopedia]]). Follow the links below to read nontechnical descriptions, in Proteopedia, of these molecules.&lt;br /&gt;
&lt;br /&gt;
UMass CBI Members, add your molecules to the list (which is alphabetical by CBI research mentor); follow the instructions below the list.&lt;br /&gt;
&lt;br /&gt;
Fall 2013: CBI Molecules are due 12/4/13 and should be added at the TOP of the list from your lab. Label it as &amp;quot;in progress&amp;quot; until you are finished, and then as &amp;quot;New 2013&amp;quot; or &amp;quot;Revised 2013&amp;quot;. For those editing an existing CBI Molecule, start from that entry so that it retains the full author list of all authors that contributed (or include credits to the original page and authors if it does not).&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
==Molecules==&lt;br /&gt;
&#039;&#039;&#039;** Designates CBI Molecules Featured on [http://http://www.umass.edu/cbi/ CBI website]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
Bhatia Lab&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Alginate-Fall2011]]&#039;&#039;&#039;, Joe White, David Griffin&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Alginate-Fall2010]]&#039;&#039;&#039;, Joe White, David Griffin&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Poly(ethylene glycol)]]&#039;&#039;&#039;, Erika M. Saffer&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[http://chamberslab.com/wp/ Chambers Lab]&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Glutamate Receptor]]&#039;&#039;&#039;,  Amanda Hussey, Steve McCarron, Rosie Combs-Bachmann, Mariel Feliciano&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[http://www.chem.umass.edu/~chenlab/index.HTML Chen Lab]&lt;br /&gt;
&lt;br /&gt;
: New Fall 2012!! &#039;&#039;&#039;[[Molecular Playground/OmpG]]&#039;&#039;&#039;, Christina Chisholm&lt;br /&gt;
: New Fall 2013!! &#039;&#039;&#039;[[Molecular Playground/ClyA]]&#039;&#039;&#039;, Bib Yang&lt;br /&gt;
&lt;br /&gt;
[http://openwetware.org/wiki/Chien Chien Lab]&lt;br /&gt;
&lt;br /&gt;
New Fall 2013! : **&#039;&#039;&#039;[[Molecular Playground/Homo-dimeric RcdA]]&#039;&#039;&#039;, Kamal K. Joshi &lt;br /&gt;
&lt;br /&gt;
: **&#039;&#039;&#039;[[Molecular Playground/Hexameric ClpX]]&#039;&#039;&#039;, Joanne Lau &lt;br /&gt;
:: Best CBI Molecule 2011&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/DNA replication initiator DnaA]]&#039;&#039;&#039;, Jing Liu&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Forbes Lab&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/CheR]]&#039;&#039;&#039;,  Miaomin Zhang&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/RBP]]&#039;&#039;&#039;,  Jan Panteli&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/TRAIL]]&#039;&#039;&#039;,  Charley Swofford&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[http://www.biochem.umass.edu/garman/index.html Garman Lab]&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Human Protective Protein Cathepsin A]]&#039;&#039;&#039;, Yadilette Rivera-Colon&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Human PPCA]]&#039;&#039;&#039;, Nilima Kolli&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[http://people.chem.umass.edu/gieraschlab/ Gierasch Lab]&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[CRABP I ( Cellular Retinoic Acid Binding Protein )|Molecular Playground/CRABP I]]&#039;&#039;&#039;, Kristine Faye Pobre, Mylene Ferrolino,Mangai Periasamy&lt;br /&gt;
:: Best Overall CBI Molecule 2010&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/CRABP I (Cellular Retinoic Acid Binding Protein)]]&#039;&#039;&#039;, Gustavo Elberto Epalza Sanchez&lt;br /&gt;
(compare this to the previous version above to see what&#039;s new)&lt;br /&gt;
&lt;br /&gt;
: **&#039;&#039;&#039;[[Molecular_Playground/DHFR]]&#039;&#039;&#039;, Karan Hingorani &lt;br /&gt;
:: Best CBI Molecule 2012&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[http://people.chem.umass.edu/jhardy/ Hardy Lab]&lt;br /&gt;
&lt;br /&gt;
: New Fall 2013!! &#039;&#039;&#039;[[Molecular Playground/Executioner Caspase-7]]&#039;&#039;&#039;, Derek MacPherson, Maureen E. Hill&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/[[Caspase-3 Regulatory Mechanisms]]&#039;&#039;&#039;, Scott Eron, Bay Serrano, Yunlong Zhao&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039; [[Molecular Playground/Caspase-6 and neurodegeneration]]&#039;&#039;&#039;, Kevin Buadlart Dagbay&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Caspase-7 Dynamics]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Caspase-9 Regulation]]&#039;&#039;&#039;, Kristen Huber&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Caspase-6 (new)]]&#039;&#039;&#039;, Elih Velazquez&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Influenza A M2 transmembrane domain]]&#039;&#039;&#039;, Samantha Nicholls&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Dengue Virus Protease]]&#039;&#039;&#039;, Muslum Yildiz&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Hebert Lab&lt;br /&gt;
&lt;br /&gt;
: New Fall 2013!! &#039;&#039;&#039;[[Molecular_Playground/Hsp70-Hsp90]]&#039;&#039;&#039;,  Jill Graham&lt;br /&gt;
: New Fall 2012!! &#039;&#039;&#039;[[Molecular_Playground/ERDj5]]&#039;&#039;&#039;,  Lydia Lamriben&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Saposin C]]&#039;&#039;&#039;, Abla Tannous&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular_Playground/ERMan1]]&#039;&#039;&#039;,  Johan Sunryd&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[http://people.biochem.umass.edu/aheuck/aph.html Heuck Lab]&lt;br /&gt;
&lt;br /&gt;
: Updated Fall 2012!! &#039;&#039;&#039;[[Molecular_Playground/Pcr H]]&#039;&#039;&#039;,  Fabian Romano, Carolina Morell-Pérez&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[http://people.chem.umass.edu/mholden/ Holden Lab]&lt;br /&gt;
&lt;br /&gt;
: New Fall 2012!! &#039;&#039;&#039;[[Molecular Playground/Protective Antigen]]&#039;&#039;&#039;,  Jing Huang&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[http://www.chem.umass.edu/people/kaltashovlab/ Kaltashov Lab]&lt;br /&gt;
&lt;br /&gt;
New 2013, Fished: &#039;&#039;&#039;[http://proteopedia.org/wiki/index.php/Chengfeng_Ren Molecular Playground/Inteferon]&#039;&#039;&#039;, Chengfeng Ren&lt;br /&gt;
&lt;br /&gt;
: Updated Fall 2012!! &#039;&#039;&#039; [[Molecular Playground/Transferrin]]&#039;&#039;&#039;, Khaja Muneeruddin, Jake Pawlowski&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Velaglucerase]]&#039;&#039;&#039;, Adriana Kita&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Knapp lab&lt;br /&gt;
&lt;br /&gt;
: Updated Fall 2013!! &#039;&#039;&#039;[[Molecular Playground/FIH]]&#039;&#039;&#039;, Vanessa Chaplin, Cornelius Taabazuing, Breanne Holmes, John Hangasky&lt;br /&gt;
 &lt;br /&gt;
: Updated Fall 2012!! &#039;&#039;&#039;[[Molecular Playground/Prolyl Hydroxylase Domain (PHD) Enzyme]]&#039;&#039;&#039;, Cristina Martin, Serap Pektas&lt;br /&gt;
:: Best CBI Molecule Proteopedia Page 2010&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[http://people.chem.umass.edu/mmaroney/ Maroney Lab]&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Nickel Superoxide Dismutase]]&#039;&#039;&#039;, Carolyn Carr&lt;br /&gt;
: Updated Fall 2013!!  &#039;&#039;&#039;[[Molecular Playground/CsoR and RcnR]]&#039;&#039;&#039;, Heidi Hu, Carolyn Carr&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/HypA]]&#039;&#039;&#039;, Heidi Hu&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[http://www.chem.umass.edu/~cmartin/ Martin Lab]&lt;br /&gt;
&lt;br /&gt;
: **&#039;&#039;&#039;[[Molecular Playground/T7 RNAP Conformations]]&#039;&#039;&#039;, Luis E. Ramirez-Tapia &lt;br /&gt;
:: Best CBI Molecule 2011&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/T7 RNA Polymerase (7 mer int)]]&#039;&#039;&#039;, Ankit Vahia&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Human mtRNA pol]]&#039;&#039;&#039;, Ketan Mathavan &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[http://www.peytonlab.org/ Peyton Lab]&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/C-Raf]]&#039;&#039;&#039;, Thuy Nguyen&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/FAK]]&#039;&#039;&#039;, Dannielle Ryman&lt;br /&gt;
: New Fall 2013! &#039;&#039;&#039;[[Molecular Playground/MMP14]]&#039;&#039;&#039;, Lauren Jansen&lt;br /&gt;
&lt;br /&gt;
[http://roberts.openwetware.org/ Roberts Lab]&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Taxol]]&#039;&#039;&#039;,  Rohan Patil, Sarah Wilson&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Insulin]]&#039;&#039;&#039;, Whitney Stoppel&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[http://www.umass.edu/rotellogroup/ Rotello Lab]&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Reverse transcriptase|Molecular Playground/Reverse Transcriptase]]&#039;&#039;&#039;, Daniel Moyano-Marino&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Pancreatic Lipase]]&#039;&#039;&#039;,  Rui Tang&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular playground/Chymotrypsin]]&#039;&#039;&#039;,  Brad&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Targeting Peptide]]&#039;&#039;&#039;, David Solfiell&lt;br /&gt;
&lt;br /&gt;
[http://http://www.umass.edu/schiffman/  Schiffman Lab]&lt;br /&gt;
:New Fall 2013! &#039;&#039;&#039;[[Molecular Playground/Streptavidin]]&#039;&#039;&#039;, Katrina Rieger&lt;br /&gt;
&lt;br /&gt;
[https://elements.chem.umass.edu/schnarrlab/ Schnarr Lab] &lt;br /&gt;
&lt;br /&gt;
: New Fall 2012!! &#039;&#039;&#039;[[Molecular Playground/4&#039;-PHOSPHOPANTETHEINYL TRANSFERASE (Sfp)]]&#039;&#039;&#039;, Jon Amoroso, Gitanjeli Prasad, Lawrence Sheringham Borketey &lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[6-deoxyerythronolide_B_synthase_(DEBS)|Molecular Playground/6-Deoxyerythronolide B Synthase]]&#039;&#039;&#039;, Tsung-Yi Lin, Jon Amoroso, Lawrence Sheringham Borketey&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/ACP apo]]&#039;&#039;&#039;, Gitanjeli Prasad&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[http://www.biochem.umass.edu/faculty/danny-j-schnell Schnell Lab]&lt;br /&gt;
: New Fall 2012!! &#039;&#039;&#039;[[Molecular Playground/Tic40]]&#039;&#039;&#039;, Mine Canakci&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Tew Lab&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/HIV Tat]]&#039;&#039;&#039;, Brittany deRonde&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Thayumanavan Lab&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Lysozyme ]]&#039;&#039;&#039;, Daniella Gonzalez&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Beta-galactosidase]]&#039;&#039;&#039;, Judy Ventura&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[User:Krishna Reddy Ragupathi|Molecular Playground/Carbonic Anhydrase]]&#039;&#039;&#039;, Krishna Reddy Raghupathi&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[User:Rami Rajasekhar Reddy|Molecular Playground/Avidin]]&#039;&#039;&#039;, Rami Rajasekar Reddy&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Biotin binding avidin]]&#039;&#039;&#039;, Diego Amado &lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[User:Jiaming Zhuang|Molecular Playground/MMP12]]&#039;&#039;&#039;, Jiaming Zhuang&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039; [[User:Jing Guo|Molecular Playground/Gluconase]]&#039;&#039;&#039;, Jing Guo&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Glutathione Reductase]]&#039;&#039;&#039;, Reuben Chacko&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Thayumanavan &amp;amp; Vachet Labs&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Trypsin]]&#039;&#039;&#039;, Gladys Murage&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[http://people.chem.umass.edu/thompson/index.html Thompson] &amp;amp; [http://www.chem.umass.edu/~rmweis/weislab/ Weis] Labs&lt;br /&gt;
&lt;br /&gt;
: New Fall 2012!! &#039;&#039;&#039;[[Molecular Playground/CheA]]&#039;&#039;&#039;, Elizabeth R. Haglin&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Bacterial Chemotaxis Receptors]]&#039;&#039;&#039;, Lynmarie K. Thompson, Shiela M. Jones&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/cytoplasmic domain of a serine chemotaxis receptor]]&#039;&#039;&#039;,  Meili Yang&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Cytoplasmic domain of chemoreceptor of Thermotoga maritima]]&#039;&#039;&#039;,  Xuni Li&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[http://www.chem.umass.edu/~vachet/index.html Vachet Lab]&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular playground/beta 2 microglobulin]]&#039;&#039;&#039;,  Nick Borotto&lt;br /&gt;
:: Best CBI Molecule Jmol scenes 2010&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Myoglobin]]&#039;&#039;&#039;,  Yuping Zhou &lt;br /&gt;
&lt;br /&gt;
:&#039;&#039;&#039;[[Molecular Playground/ Copper-Zinc Superoxide Dismutase]]&#039;&#039;&#039;, Shaynah Browne&lt;br /&gt;
&lt;br /&gt;
: New Fall 2012!! &#039;&#039;&#039;[[Molecular Playground/Ubiquitin salt bridge discussion]]&#039;&#039;&#039;, Zhe Zhang&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Other Molecules of interest&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/PcrA Helicase]]&#039;&#039;&#039;, Luis E Ramirez-Tapia, [http://www.chem.umass.edu/~cmartin/ Martin Lab]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Other Laboratories&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/YKL-40]]&#039;&#039;&#039;, Ralph A. Francescone III, [http://www.bio.umass.edu/mcb/faculty/Shao.html Shao Lab]&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/BLG|Molecular Playground/β-lactoglobulin]]&#039;&#039;&#039;, Daniel Seeman, Dubin Lab&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/ADAM13]]&#039;&#039;&#039;, Genevieve Abbruzzese, Alfandari Lab&lt;br /&gt;
&lt;br /&gt;
==Instructions==&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The goal is for students to work collaboratively to create one excellent CBI Molecule for each CBI research group, to be featured on the CBI website.&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
Fall 2013: Complete steps 1-2 by 10/18, and bring your computer to the CBI Molecule Workshop on Wed 10/23 in ISB 321. &lt;br /&gt;
&lt;br /&gt;
A successful CBI Molecule will be an interesting, nontechnical description of a molecule related to your group&#039;s research. It should not be super long, but instead have multiple green scenes. Green scenes should clearly show an interesting feature and should be attractive. Use the green scenes to help you make interesting points about the molecule (do not try to describe every feature of the molecule). It&#039;s great if you can end with a brief statement about how it relates to your group&#039;s research goals.&lt;br /&gt;
&lt;br /&gt;
1. If you don&#039;t already have one, request a Proteopedia account and log in. &lt;br /&gt;
&lt;br /&gt;
2. Read through the rest of the instructions and look at any existing CBI Molecules from your research group. Talk with other Chalk Talk students in your research group and think about how you can make a new or improved CBI Molecule related to your group&#039;s research. Develop ideas for the scenes you wish to show. You will work learn how to make scenes during the workshop. &lt;br /&gt;
&lt;br /&gt;
3. Get started working in Proteopedia by using the links at [[Help:Contents]]. Make yourself a sandbox page: Enter &amp;quot;User:Your Name/Sandbox 1&amp;quot; (omit quotes) in the search box, then follow instructions to edit this page. Practice entering text, inserting a structure window with scrolling text (green 4-square button on the right), and creating a green scene. You can look at other Proteopedia pages in edit mode to see how different effects (like colored text) are achieved (but this won&#039;t show you how the scene effects are made). &lt;br /&gt;
&lt;br /&gt;
4. For those editing an existing CBI Molecule, start from that entry so that it retains the full author list of all authors that contributed. You are encouraged to collaborate on the CBI Molecules, but everyone will need to do some editing of the molecule so that they each appear as authors on the final list. If you are the sole student from your group enrolled in Chalk Talk and have not previously made a CBI Molecule, try to convince another group member who has previously made a CBI Molecule (see  list above) to join us for the workshop so that you can work together.&lt;br /&gt;
&lt;br /&gt;
5. Your final pages should be called &amp;quot;Molecular Playground/your molecule&amp;quot; and should have links on this CBI Molecule page -- put the new ones first on the list from your research group. Label them &amp;quot;in progress&amp;quot; until you are finished, and then &amp;quot;new 2013&amp;quot; or &amp;quot;revised 2013&amp;quot;.&lt;br /&gt;
&lt;br /&gt;
==Links to HELP pages==&lt;br /&gt;
Overview at [[Help:Contents ]]&lt;br /&gt;
&lt;br /&gt;
See also [[Help:Getting_Started_in_Proteopedia]] &lt;br /&gt;
&lt;br /&gt;
Videos showing how to use Proteopedia:&lt;br /&gt;
[[Proteopedia:Video_Guide]]&lt;br /&gt;
(Sometimes slow -- if you pause the video and wait awhile it will download and then you can play it without interruptions)&lt;br /&gt;
&lt;br /&gt;
[[Proteopedia:DIY:Scenes|Proteopedia Scenes: Do It Yourself]]&lt;br /&gt;
gives succinct step by step instructions on how to create a molecular scene.&lt;br /&gt;
&lt;br /&gt;
A powerpoint-like set of slides that walks a user through the process of creating a new page and a new molecular scene/green link.&lt;br /&gt;
[http://www.proteopedia.org/wiki/images/1/1b/2009_07_13_Proteopedia_Workshop.pdf Proteopedia Workshop Slides]&lt;br /&gt;
&lt;br /&gt;
[[Proteopedia:Guidelines for Ethical Writing]].&lt;br /&gt;
Please pay attention to the section about images. There are links to examples of images re-used with explicit permission.&lt;br /&gt;
&lt;br /&gt;
For other help resources, click on [[Help:Contents|Help]] in the &#039;&#039;navigation&#039;&#039; box at the upper left of every page in Proteopedia.&lt;/div&gt;</summary>
		<author><name>Chengfeng Ren</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=CBI_Molecules&amp;diff=1873230</id>
		<title>CBI Molecules</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=CBI_Molecules&amp;diff=1873230"/>
		<updated>2013-12-06T19:10:07Z</updated>

		<summary type="html">&lt;p&gt;Chengfeng Ren: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;These are molecules under study by members of the [http://www.umass.edu/cbi/ University of Massachusetts Amherst Chemistry-Biology Interface Program].&lt;br /&gt;
Many of the  molecules we study are featured at the [http://www.molecularplayground.org/ Molecular Playground] (see also [[Molecular Playground|Molecular Playground in Proteopedia]]). Follow the links below to read nontechnical descriptions, in Proteopedia, of these molecules.&lt;br /&gt;
&lt;br /&gt;
UMass CBI Members, add your molecules to the list (which is alphabetical by CBI research mentor); follow the instructions below the list.&lt;br /&gt;
&lt;br /&gt;
Fall 2013: CBI Molecules are due 12/4/13 and should be added at the TOP of the list from your lab. Label it as &amp;quot;in progress&amp;quot; until you are finished, and then as &amp;quot;New 2013&amp;quot; or &amp;quot;Revised 2013&amp;quot;. For those editing an existing CBI Molecule, start from that entry so that it retains the full author list of all authors that contributed (or include credits to the original page and authors if it does not).&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
==Molecules==&lt;br /&gt;
&#039;&#039;&#039;** Designates CBI Molecules Featured on [http://http://www.umass.edu/cbi/ CBI website]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
Bhatia Lab&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Alginate-Fall2011]]&#039;&#039;&#039;, Joe White, David Griffin&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Alginate-Fall2010]]&#039;&#039;&#039;, Joe White, David Griffin&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Poly(ethylene glycol)]]&#039;&#039;&#039;, Erika M. Saffer&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[http://chamberslab.com/wp/ Chambers Lab]&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Glutamate Receptor]]&#039;&#039;&#039;,  Amanda Hussey, Steve McCarron, Rosie Combs-Bachmann, Mariel Feliciano&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[http://www.chem.umass.edu/~chenlab/index.HTML Chen Lab]&lt;br /&gt;
&lt;br /&gt;
: New Fall 2012!! &#039;&#039;&#039;[[Molecular Playground/OmpG]]&#039;&#039;&#039;, Christina Chisholm&lt;br /&gt;
: New Fall 2013!! &#039;&#039;&#039;[[Molecular Playground/ClyA]]&#039;&#039;&#039;, Bib Yang&lt;br /&gt;
&lt;br /&gt;
[http://openwetware.org/wiki/Chien Chien Lab]&lt;br /&gt;
&lt;br /&gt;
New Fall 2013! : **&#039;&#039;&#039;[[Molecular Playground/Homo-dimeric RcdA]]&#039;&#039;&#039;, Kamal K. Joshi &lt;br /&gt;
&lt;br /&gt;
: **&#039;&#039;&#039;[[Molecular Playground/Hexameric ClpX]]&#039;&#039;&#039;, Joanne Lau &lt;br /&gt;
:: Best CBI Molecule 2011&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/DNA replication initiator DnaA]]&#039;&#039;&#039;, Jing Liu&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Forbes Lab&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/CheR]]&#039;&#039;&#039;,  Miaomin Zhang&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/RBP]]&#039;&#039;&#039;,  Jan Panteli&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/TRAIL]]&#039;&#039;&#039;,  Charley Swofford&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[http://www.biochem.umass.edu/garman/index.html Garman Lab]&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Human Protective Protein Cathepsin A]]&#039;&#039;&#039;, Yadilette Rivera-Colon&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Human PPCA]]&#039;&#039;&#039;, Nilima Kolli&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[http://people.chem.umass.edu/gieraschlab/ Gierasch Lab]&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[CRABP I ( Cellular Retinoic Acid Binding Protein )|Molecular Playground/CRABP I]]&#039;&#039;&#039;, Kristine Faye Pobre, Mylene Ferrolino,Mangai Periasamy&lt;br /&gt;
:: Best Overall CBI Molecule 2010&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/CRABP I (Cellular Retinoic Acid Binding Protein)]]&#039;&#039;&#039;, Gustavo Elberto Epalza Sanchez&lt;br /&gt;
(compare this to the previous version above to see what&#039;s new)&lt;br /&gt;
&lt;br /&gt;
: **&#039;&#039;&#039;[[Molecular_Playground/DHFR]]&#039;&#039;&#039;, Karan Hingorani &lt;br /&gt;
:: Best CBI Molecule 2012&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[http://people.chem.umass.edu/jhardy/ Hardy Lab]&lt;br /&gt;
&lt;br /&gt;
: New Fall 2013!! &#039;&#039;&#039;[[Molecular Playground/Executioner Caspase-7]]&#039;&#039;&#039;, Derek MacPherson, Maureen E. Hill&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/[[Caspase-3 Regulatory Mechanisms]]&#039;&#039;&#039;, Scott Eron, Bay Serrano, Yunlong Zhao&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039; [[Molecular Playground/Caspase-6 and neurodegeneration]]&#039;&#039;&#039;, Kevin Buadlart Dagbay&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Caspase-7 Dynamics]]&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Caspase-9 Regulation]]&#039;&#039;&#039;, Kristen Huber&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Caspase-6 (new)]]&#039;&#039;&#039;, Elih Velazquez&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Influenza A M2 transmembrane domain]]&#039;&#039;&#039;, Samantha Nicholls&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Dengue Virus Protease]]&#039;&#039;&#039;, Muslum Yildiz&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Hebert Lab&lt;br /&gt;
&lt;br /&gt;
: New Fall 2013!! &#039;&#039;&#039;[[Molecular_Playground/Hsp70-Hsp90]]&#039;&#039;&#039;,  Jill Graham&lt;br /&gt;
: New Fall 2012!! &#039;&#039;&#039;[[Molecular_Playground/ERDj5]]&#039;&#039;&#039;,  Lydia Lamriben&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Saposin C]]&#039;&#039;&#039;, Abla Tannous&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular_Playground/ERMan1]]&#039;&#039;&#039;,  Johan Sunryd&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[http://people.biochem.umass.edu/aheuck/aph.html Heuck Lab]&lt;br /&gt;
&lt;br /&gt;
: Updated Fall 2012!! &#039;&#039;&#039;[[Molecular_Playground/Pcr H]]&#039;&#039;&#039;,  Fabian Romano, Carolina Morell-Pérez&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[http://people.chem.umass.edu/mholden/ Holden Lab]&lt;br /&gt;
&lt;br /&gt;
: New Fall 2012!! &#039;&#039;&#039;[[Molecular Playground/Protective Antigen]]&#039;&#039;&#039;,  Jing Huang&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[http://www.chem.umass.edu/people/kaltashovlab/ Kaltashov Lab]&lt;br /&gt;
&lt;br /&gt;
: Updated Fall 2013!! &#039;&#039;&#039; [[Molecular Playground/Transferrin]]&#039;&#039;&#039;, Khaja Muneeruddin, Jake Pawlowski&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Velaglucerase]]&#039;&#039;&#039;, Adriana Kita&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Inteferon]]&#039;&#039;&#039;, Chengfeng Ren&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Knapp lab&lt;br /&gt;
&lt;br /&gt;
: Updated Fall 2013!! &#039;&#039;&#039;[[Molecular Playground/FIH]]&#039;&#039;&#039;, Vanessa Chaplin, Cornelius Taabazuing, Breanne Holmes, John Hangasky&lt;br /&gt;
 &lt;br /&gt;
: Updated Fall 2012!! &#039;&#039;&#039;[[Molecular Playground/Prolyl Hydroxylase Domain (PHD) Enzyme]]&#039;&#039;&#039;, Cristina Martin, Serap Pektas&lt;br /&gt;
:: Best CBI Molecule Proteopedia Page 2010&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[http://people.chem.umass.edu/mmaroney/ Maroney Lab]&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Nickel Superoxide Dismutase]]&#039;&#039;&#039;, Carolyn Carr&lt;br /&gt;
: Updated Fall 2013!!  &#039;&#039;&#039;[[Molecular Playground/CsoR and RcnR]]&#039;&#039;&#039;, Heidi Hu, Carolyn Carr&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/HypA]]&#039;&#039;&#039;, Heidi Hu&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[http://www.chem.umass.edu/~cmartin/ Martin Lab]&lt;br /&gt;
&lt;br /&gt;
: **&#039;&#039;&#039;[[Molecular Playground/T7 RNAP Conformations]]&#039;&#039;&#039;, Luis E. Ramirez-Tapia &lt;br /&gt;
:: Best CBI Molecule 2011&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/T7 RNA Polymerase (7 mer int)]]&#039;&#039;&#039;, Ankit Vahia&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Human mtRNA pol]]&#039;&#039;&#039;, Ketan Mathavan &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[http://www.peytonlab.org/ Peyton Lab]&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/C-Raf]]&#039;&#039;&#039;, Thuy Nguyen&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/FAK]]&#039;&#039;&#039;, Dannielle Ryman&lt;br /&gt;
: New Fall 2013! &#039;&#039;&#039;[[Molecular Playground/MMP14]]&#039;&#039;&#039;, Lauren Jansen&lt;br /&gt;
&lt;br /&gt;
[http://roberts.openwetware.org/ Roberts Lab]&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Taxol]]&#039;&#039;&#039;,  Rohan Patil, Sarah Wilson&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Insulin]]&#039;&#039;&#039;, Whitney Stoppel&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[http://www.umass.edu/rotellogroup/ Rotello Lab]&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Reverse transcriptase|Molecular Playground/Reverse Transcriptase]]&#039;&#039;&#039;, Daniel Moyano-Marino&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Pancreatic Lipase]]&#039;&#039;&#039;,  Rui Tang&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular playground/Chymotrypsin]]&#039;&#039;&#039;,  Brad&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Targeting Peptide]]&#039;&#039;&#039;, David Solfiell&lt;br /&gt;
&lt;br /&gt;
[http://http://www.umass.edu/schiffman/  Schiffman Lab]&lt;br /&gt;
:New Fall 2013! &#039;&#039;&#039;[[Molecular Playground/Streptavidin]]&#039;&#039;&#039;, Katrina Rieger&lt;br /&gt;
&lt;br /&gt;
[https://elements.chem.umass.edu/schnarrlab/ Schnarr Lab] &lt;br /&gt;
&lt;br /&gt;
: New Fall 2012!! &#039;&#039;&#039;[[Molecular Playground/4&#039;-PHOSPHOPANTETHEINYL TRANSFERASE (Sfp)]]&#039;&#039;&#039;, Jon Amoroso, Gitanjeli Prasad, Lawrence Sheringham Borketey &lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[6-deoxyerythronolide_B_synthase_(DEBS)|Molecular Playground/6-Deoxyerythronolide B Synthase]]&#039;&#039;&#039;, Tsung-Yi Lin, Jon Amoroso, Lawrence Sheringham Borketey&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/ACP apo]]&#039;&#039;&#039;, Gitanjeli Prasad&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[http://www.biochem.umass.edu/faculty/danny-j-schnell Schnell Lab]&lt;br /&gt;
: New Fall 2012!! &#039;&#039;&#039;[[Molecular Playground/Tic40]]&#039;&#039;&#039;, Mine Canakci&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Tew Lab&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/HIV Tat]]&#039;&#039;&#039;, Brittany deRonde&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Thayumanavan Lab&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Lysozyme ]]&#039;&#039;&#039;, Daniella Gonzalez&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Beta-galactosidase]]&#039;&#039;&#039;, Judy Ventura&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[User:Krishna Reddy Ragupathi|Molecular Playground/Carbonic Anhydrase]]&#039;&#039;&#039;, Krishna Reddy Raghupathi&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[User:Rami Rajasekhar Reddy|Molecular Playground/Avidin]]&#039;&#039;&#039;, Rami Rajasekar Reddy&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Biotin binding avidin]]&#039;&#039;&#039;, Diego Amado &lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[User:Jiaming Zhuang|Molecular Playground/MMP12]]&#039;&#039;&#039;, Jiaming Zhuang&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039; [[User:Jing Guo|Molecular Playground/Gluconase]]&#039;&#039;&#039;, Jing Guo&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Glutathione Reductase]]&#039;&#039;&#039;, Reuben Chacko&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Thayumanavan &amp;amp; Vachet Labs&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Trypsin]]&#039;&#039;&#039;, Gladys Murage&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[http://people.chem.umass.edu/thompson/index.html Thompson] &amp;amp; [http://www.chem.umass.edu/~rmweis/weislab/ Weis] Labs&lt;br /&gt;
&lt;br /&gt;
: New Fall 2012!! &#039;&#039;&#039;[[Molecular Playground/CheA]]&#039;&#039;&#039;, Elizabeth R. Haglin&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Bacterial Chemotaxis Receptors]]&#039;&#039;&#039;, Lynmarie K. Thompson, Shiela M. Jones&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/cytoplasmic domain of a serine chemotaxis receptor]]&#039;&#039;&#039;,  Meili Yang&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Cytoplasmic domain of chemoreceptor of Thermotoga maritima]]&#039;&#039;&#039;,  Xuni Li&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[http://www.chem.umass.edu/~vachet/index.html Vachet Lab]&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular playground/beta 2 microglobulin]]&#039;&#039;&#039;,  Nick Borotto&lt;br /&gt;
:: Best CBI Molecule Jmol scenes 2010&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/Myoglobin]]&#039;&#039;&#039;,  Yuping Zhou &lt;br /&gt;
&lt;br /&gt;
:&#039;&#039;&#039;[[Molecular Playground/ Copper-Zinc Superoxide Dismutase]]&#039;&#039;&#039;, Shaynah Browne&lt;br /&gt;
&lt;br /&gt;
: New Fall 2012!! &#039;&#039;&#039;[[Molecular Playground/Ubiquitin salt bridge discussion]]&#039;&#039;&#039;, Zhe Zhang&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Other Molecules of interest&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/PcrA Helicase]]&#039;&#039;&#039;, Luis E Ramirez-Tapia, [http://www.chem.umass.edu/~cmartin/ Martin Lab]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Other Laboratories&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/YKL-40]]&#039;&#039;&#039;, Ralph A. Francescone III, [http://www.bio.umass.edu/mcb/faculty/Shao.html Shao Lab]&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/BLG|Molecular Playground/β-lactoglobulin]]&#039;&#039;&#039;, Daniel Seeman, Dubin Lab&lt;br /&gt;
&lt;br /&gt;
: &#039;&#039;&#039;[[Molecular Playground/ADAM13]]&#039;&#039;&#039;, Genevieve Abbruzzese, Alfandari Lab&lt;br /&gt;
&lt;br /&gt;
==Instructions==&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The goal is for students to work collaboratively to create one excellent CBI Molecule for each CBI research group, to be featured on the CBI website.&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
Fall 2013: Complete steps 1-2 by 10/18, and bring your computer to the CBI Molecule Workshop on Wed 10/23 in ISB 321. &lt;br /&gt;
&lt;br /&gt;
A successful CBI Molecule will be an interesting, nontechnical description of a molecule related to your group&#039;s research. It should not be super long, but instead have multiple green scenes. Green scenes should clearly show an interesting feature and should be attractive. Use the green scenes to help you make interesting points about the molecule (do not try to describe every feature of the molecule). It&#039;s great if you can end with a brief statement about how it relates to your group&#039;s research goals.&lt;br /&gt;
&lt;br /&gt;
1. If you don&#039;t already have one, request a Proteopedia account and log in. &lt;br /&gt;
&lt;br /&gt;
2. Read through the rest of the instructions and look at any existing CBI Molecules from your research group. Talk with other Chalk Talk students in your research group and think about how you can make a new or improved CBI Molecule related to your group&#039;s research. Develop ideas for the scenes you wish to show. You will work learn how to make scenes during the workshop. &lt;br /&gt;
&lt;br /&gt;
3. Get started working in Proteopedia by using the links at [[Help:Contents]]. Make yourself a sandbox page: Enter &amp;quot;User:Your Name/Sandbox 1&amp;quot; (omit quotes) in the search box, then follow instructions to edit this page. Practice entering text, inserting a structure window with scrolling text (green 4-square button on the right), and creating a green scene. You can look at other Proteopedia pages in edit mode to see how different effects (like colored text) are achieved (but this won&#039;t show you how the scene effects are made). &lt;br /&gt;
&lt;br /&gt;
4. For those editing an existing CBI Molecule, start from that entry so that it retains the full author list of all authors that contributed. You are encouraged to collaborate on the CBI Molecules, but everyone will need to do some editing of the molecule so that they each appear as authors on the final list. If you are the sole student from your group enrolled in Chalk Talk and have not previously made a CBI Molecule, try to convince another group member who has previously made a CBI Molecule (see  list above) to join us for the workshop so that you can work together.&lt;br /&gt;
&lt;br /&gt;
5. Your final pages should be called &amp;quot;Molecular Playground/your molecule&amp;quot; and should have links on this CBI Molecule page -- put the new ones first on the list from your research group. Label them &amp;quot;in progress&amp;quot; until you are finished, and then &amp;quot;new 2013&amp;quot; or &amp;quot;revised 2013&amp;quot;.&lt;br /&gt;
&lt;br /&gt;
==Links to HELP pages==&lt;br /&gt;
Overview at [[Help:Contents ]]&lt;br /&gt;
&lt;br /&gt;
See also [[Help:Getting_Started_in_Proteopedia]] &lt;br /&gt;
&lt;br /&gt;
Videos showing how to use Proteopedia:&lt;br /&gt;
[[Proteopedia:Video_Guide]]&lt;br /&gt;
(Sometimes slow -- if you pause the video and wait awhile it will download and then you can play it without interruptions)&lt;br /&gt;
&lt;br /&gt;
[[Proteopedia:DIY:Scenes|Proteopedia Scenes: Do It Yourself]]&lt;br /&gt;
gives succinct step by step instructions on how to create a molecular scene.&lt;br /&gt;
&lt;br /&gt;
A powerpoint-like set of slides that walks a user through the process of creating a new page and a new molecular scene/green link.&lt;br /&gt;
[http://www.proteopedia.org/wiki/images/1/1b/2009_07_13_Proteopedia_Workshop.pdf Proteopedia Workshop Slides]&lt;br /&gt;
&lt;br /&gt;
[[Proteopedia:Guidelines for Ethical Writing]].&lt;br /&gt;
Please pay attention to the section about images. There are links to examples of images re-used with explicit permission.&lt;br /&gt;
&lt;br /&gt;
For other help resources, click on [[Help:Contents|Help]] in the &#039;&#039;navigation&#039;&#039; box at the upper left of every page in Proteopedia.&lt;/div&gt;</summary>
		<author><name>Chengfeng Ren</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=User:Chengfeng_Ren/IFN_beta_1a&amp;diff=1873167</id>
		<title>User:Chengfeng Ren/IFN beta 1a</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=User:Chengfeng_Ren/IFN_beta_1a&amp;diff=1873167"/>
		<updated>2013-12-06T18:03:11Z</updated>

		<summary type="html">&lt;p&gt;Chengfeng Ren: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;==&#039;&#039;&#039;IFN Categories and IFNβ-1a sources&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
Interferons (IFNs) are a family of helical cytokines that mediate&lt;br /&gt;
antiviral, antiproliferative, and immune modulatory activities in&lt;br /&gt;
response to biological and chemical stimuli. Two types of IFN are recognized on   &lt;br /&gt;
the basis of their physical and biological properties; type I, which   &lt;br /&gt;
contains the monomeric IFNs-α,-β,-τ, and -ω, and type II, the&lt;br /&gt;
only member of which is the dimeric IFN-γ. Representatives of all&lt;br /&gt;
type I and type II IFNs are found in humans, except for IFN-τ,&lt;br /&gt;
which is found only in ruminant ungulates. There are 12 different human IFNs-α;each one&lt;br /&gt;
comprising a different subtype,although 14 different genes have&lt;br /&gt;
been identified, whereas human IFN-β, IFN-ω, and IFN-γare&lt;br /&gt;
encoded by single genes[1].&lt;br /&gt;
&lt;br /&gt;
Interferon-βhas two subtyes, interferon-β-1a and interferon-β-1b. Interferon-β-1a is naturally expressed in numerous cell types in human, including &lt;br /&gt;
fibroblasts, endothelial cells, epithelial cells and various leukocytes, however,Interferon-β-1b is produced in modified E. coli.&lt;br /&gt;
&lt;br /&gt;
Here is a jpg clearly illustrating IFNs categories.&lt;br /&gt;
[[Image:IFN categories.jpg]]&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;Structure info. of IFNβ-1a&#039;&#039;&#039;==&lt;br /&gt;
IFNβ-1a consisting of 166 amino acids, around 20KDa. It has 5 helixs.&lt;br /&gt;
&amp;lt;Structure load=&#039;1au1&#039; size=&#039;500&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;IFN structure from PDB&#039; scene=&#039;IFN scene_structure&#039; /&amp;gt;&lt;br /&gt;
&amp;lt;scene name=&#039;56/566498/Ifn_beta_1a_scene_structure/1&#039;&amp;gt;IFN beta 1a structure&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;IFNβ-1a biological activity and therapeutic effects&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
IFNβ-1a as well as other family of IFNs has a variety of biological activities, inluding antiviral, antiproliferative, and immune modulatory activities in response to biological and chemical stimuli[2]. &lt;br /&gt;
&lt;br /&gt;
IFNβ-1a is mainly used to treat relapsing forms of multiple sclerosis(MS).&lt;br /&gt;
MS is a life-long disease that affects your nervous system &lt;br /&gt;
by destroying the protective covering (myelin) that surrounds&lt;br /&gt;
your nerve fibers.&lt;br /&gt;
The commercial available drug format is [http://http://www.avonex.com/ Avonex].(Please refer to the drug guide before using it)&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;Mechanism of action for IFNβ-1a&#039;&#039;&#039;==&lt;br /&gt;
IFNβis encoded by a single gene&lt;br /&gt;
with no introns (and hence, no splice variants), and no reported&lt;br /&gt;
polymorphisms. Although IFNβwas originally called fibroblast&lt;br /&gt;
IFN–because fibroblasts could be induced to produce it in vitro–&lt;br /&gt;
numerous other cell types can express IFNβ, including endothelial&lt;br /&gt;
cells, epithelial cells and various leukocytes. Unlike IFNα,&lt;br /&gt;
where a particular subset of dendritic cells appears to be one of the&lt;br /&gt;
primary in vivo sources, a physiological source of IFNβhas not&lt;br /&gt;
been identified. Endogenous IFNβis not generally detected at&lt;br /&gt;
significant levels in humans. So called “natural” human IFNβ&lt;br /&gt;
(expressed by fibroblasts in vitro), is glycosylated at one site with&lt;br /&gt;
an N-linked complex carbohydrate, the exact structure of which&lt;br /&gt;
can be influenced by growth conditions and the cell type&lt;br /&gt;
producing the IFN. While important for monomer stability,&lt;br /&gt;
solubility and, perhaps biodistribution, the carbohydrate moiety&lt;br /&gt;
does not appear to be required for receptor binding.&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The IFNβreceptor, signaling cascade and gene regulation&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
The IFNβreceptor is composed of 2 required chains—a signaling&lt;br /&gt;
chain, IFNAR1, and a binding chain, IFNAR2. Both IFNAR1 and&lt;br /&gt;
IFNAR2 are constitutively expressed on the surface of virtually all cells. IFNβcan bind to IFNAR2 alone, but can bind to IFNAR1 only in&lt;br /&gt;
the presence of IFNAR2. The strength of IFNβbinding to its&lt;br /&gt;
receptor is much higher when both subunits are present.&lt;br /&gt;
Knockout experiments indicate that both IFNAR1 and IFNAR2 are&lt;br /&gt;
required for IFNβ activity, but it remains uncertain&lt;br /&gt;
whether there are auxiliary receptors or alternative receptor/&lt;br /&gt;
signaling complexes in some cell types.&lt;br /&gt;
The current view of events leading to IFNβbiological activity is&lt;br /&gt;
as follows (Fig. 1A): 1) IFN binds to the extracellular domain of&lt;br /&gt;
IFNAR2. 2) IFNAR1 then engages with the IFNβ–IFNAR2 complex,&lt;br /&gt;
forming the high-affinity receptor–ligand complex and allowing&lt;br /&gt;
the intracellular domains of the two receptor chains and&lt;br /&gt;
associated proteins to interact. 3) This interaction, which includes&lt;br /&gt;
JAK1 (associated with IFNAR2) and Tyk2 (associated with IFNAR1),&lt;br /&gt;
results in a cascade of phosphorylation events that leads to&lt;br /&gt;
activation of STATS. 4) Activated STATS form a complex with other&lt;br /&gt;
cytoplasmic proteins, which then translocate into the nucleus to&lt;br /&gt;
bind to Interferon Sensitive Response Elements (ISRE), transcriptional control regions which are upstream of many IFN regulated&lt;br /&gt;
genes. 5) This ISRE binding results in transcriptional regulation&lt;br /&gt;
(both induction and inhibition) of &amp;gt;1000 genes.&lt;br /&gt;
Thus, IFN regulates expression of a myriad of genes. While the&lt;br /&gt;
function of some of these genes is clear (e.g. the antiviral product&lt;br /&gt;
MxA), the specific transcripts mediating therapeutic benefit of&lt;br /&gt;
IFNβin MS are unknown. This is, in part, due to the complexity and&lt;br /&gt;
heterogeneity of MS, but also because IFNβis an agonist that can&lt;br /&gt;
induce the expression not only of ISRE regulated genes, but&lt;br /&gt;
through newly expressed transcription factors, can induce or&lt;br /&gt;
inhibit subsequent waves of gene expression. In addition, some&lt;br /&gt;
IFNβregulated proteins, which include cytokines and chemokines,&lt;br /&gt;
can alter the level or function of particular cell populations. The&lt;br /&gt;
resulting multifaceted biological response is in contrast to&lt;br /&gt;
therapies such as monoclonal antibodies that have a much more&lt;br /&gt;
specific molecular target. Thus, as shown inFig. 1B, IFNβmay exert&lt;br /&gt;
its therapeutic effects in two distinct ways: 1) direct effects of IFNβ&lt;br /&gt;
regulated gene products; or 2) indirect effects of IFN-regulated gene products, via effects on other genes (e.g. transcription&lt;br /&gt;
factors), or by altering populations or functions of cells including&lt;br /&gt;
Type 2 dendritic cells, monocytes, regulatory T-cells and CD56&lt;br /&gt;
bright NK cells[2-9].&lt;br /&gt;
[[Image:Mechanism of action of IFN.jpg]]&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;Reference&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
[1] R. Arduini, K. Strauch, L. Rukel etal.Characterization of a soluble ternary complex formed&lt;br /&gt;
between human interferon-b-1a and its receptor chains&#039;&#039;Protein Science&#039;&#039; (1999),&#039;&#039;8&#039;&#039;:1867–1877&lt;br /&gt;
&lt;br /&gt;
[2] T. Taniguchi, A. Takaoka, The interferon-alpha/beta system in&lt;br /&gt;
antiviral responses: a multimodal machinery of gene regulation&lt;br /&gt;
by the IRF family of transcription factors, Curr. Opin. Immunol.&lt;br /&gt;
14 (1) (Feb 2002) 111–116.&lt;br /&gt;
&lt;br /&gt;
[3] K. Kasama, J. Utsumi, E. Matsuo-Ogawa, T. Nagahata, Y. Kagawa,&lt;br /&gt;
S. Yamazaki, et al., Pharmacokinetics and biologic activities of&lt;br /&gt;
human native and asialointerferon-beta s, J. Interferon Cytokine&lt;br /&gt;
Res. 15 (5) (May 1995) 407–415.&lt;br /&gt;
&lt;br /&gt;
[4] L. Runkel, W. Meier, R.B. Pepinsky, M. Karpusas, A. Whitty,&lt;br /&gt;
K. Kimball, et al., Structural and functional differences between&lt;br /&gt;
glycosylated and non-glycosylated forms of human&lt;br /&gt;
interferon-beta (IFN-beta), Pharm. Res. 15 (4) (Apr 1998)&lt;br /&gt;
641–649.&lt;br /&gt;
&lt;br /&gt;
[5] R.M. Arduini, K.L. Strauch, L.A. Runkel, M.M. Carlson, X.&lt;br /&gt;
Hronowski, S.F. Foley, et al., Characterization of a soluble&lt;br /&gt;
ternary complex formed between human interferon-beta-1a&lt;br /&gt;
and its receptor chains, Protein Sci. 8 (9) (Sep 1999)&lt;br /&gt;
1867–1877.&lt;br /&gt;
&lt;br /&gt;
[6] G. Uze, G. Schreiber, J. Piehler, S. Pellegrini, The receptor of the&lt;br /&gt;
type I interferon family, Curr. Top. Microbiol. Immunol. 316&lt;br /&gt;
(2007) 71–95.&lt;br /&gt;
&lt;br /&gt;
[7] C.M. Cleary, R.J. Donnelly, J. Soh, T.M. Mariano, S. Pestka,&lt;br /&gt;
Knockout and reconstitution of a functional human type I&lt;br /&gt;
interferon receptor complex, J. Biol. Chem. 269 (29)&lt;br /&gt;
(Jul 22 1994) 18747–18749.&lt;br /&gt;
&lt;br /&gt;
[8] J. Kumaran, O.R. Colamonici, E.N. Fish, Structure–function study&lt;br /&gt;
of the extracellular domain of the human type I interferon&lt;br /&gt;
receptor (IFNAR)-1 subunit, J. Interferon Cytokine Res. 20 (5)&lt;br /&gt;
(May 2000) 479–485.&lt;br /&gt;
&lt;br /&gt;
[9] J. Ghislain, G. Sussman, S. Goelz, L.E. Ling, E.N. Fish, Configuration&lt;br /&gt;
of the interferon-alpha/beta receptor complex determines the&lt;br /&gt;
context of the biological response, J. Biol. Chem. 270 (37)&lt;br /&gt;
(Sep 15 1995) 21785–21792.&lt;/div&gt;</summary>
		<author><name>Chengfeng Ren</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Chengfeng_Ren/Sandbox1&amp;diff=1873145</id>
		<title>Chengfeng Ren/Sandbox1</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Chengfeng_Ren/Sandbox1&amp;diff=1873145"/>
		<updated>2013-12-06T17:32:40Z</updated>

		<summary type="html">&lt;p&gt;Chengfeng Ren: /* &amp;#039;&amp;#039;&amp;#039;IFNβ-1a biological activity and therapeutic effects&amp;#039;&amp;#039;&amp;#039; */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;==&#039;&#039;&#039;IFN Categories and IFNβ-1a sources&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
Interferons (IFNs) are a family of helical cytokines that mediate&lt;br /&gt;
antiviral, antiproliferative, and immune modulatory activities in&lt;br /&gt;
response to biological and chemical stimuli. Two types of IFN are recognized on   &lt;br /&gt;
the basis of their physical and biological properties; type I, which   &lt;br /&gt;
contains the monomeric IFNs-α,-β,-τ, and -ω, and type II, the&lt;br /&gt;
only member of which is the dimeric IFN-γ. Representatives of all&lt;br /&gt;
type I and type II IFNs are found in humans, except for IFN-τ,&lt;br /&gt;
which is found only in ruminant ungulates. There are 12 different human IFNs-α;each one&lt;br /&gt;
comprising a different subtype,although 14 different genes have&lt;br /&gt;
been identified, whereas human IFN-β, IFN-ω, and IFN-γare&lt;br /&gt;
encoded by single genes[1].&lt;br /&gt;
&lt;br /&gt;
Interferon-βhas two subtyes, interferon-β-1a and interferon-β-1b. Interferon-β-1a is naturally expressed in numerous cell types in human, including &lt;br /&gt;
fibroblasts, endothelial cells, epithelial cells and various leukocytes, however,Interferon-β-1b is produced in modified E. coli.&lt;br /&gt;
&lt;br /&gt;
Here is a jpg clearly illustrating IFNs categories.&lt;br /&gt;
[[Image:IFN categories.jpg]]&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;Structure info. of IFNβ-1a&#039;&#039;&#039;==&lt;br /&gt;
IFNβ-1a consisting of 166 amino acids, around 20KDa. It has 5 helixs.&lt;br /&gt;
&amp;lt;Structure load=&#039;1au1&#039; size=&#039;500&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;IFN structure from PDB&#039; scene=&#039;IFN scene_structure&#039; /&amp;gt;&lt;br /&gt;
&amp;lt;scene name=&#039;56/566498/Ifn_beta_1a_scene_structure/1&#039;&amp;gt;IFN beta 1a structure&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;IFNβ-1a biological activity and therapeutic effects&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
IFNβ-1a as well as other family of IFNs has a variety of biological activities, inluding antiviral, antiproliferative, and immune modulatory activities in response to biological and chemical stimuli[2]. &lt;br /&gt;
&lt;br /&gt;
IFNβ-1a is mainly used to treat relapsing forms of multiple sclerosis(MS).&lt;br /&gt;
MS is a life-long disease that affects your nervous system &lt;br /&gt;
by destroying the protective covering (myelin) that surrounds&lt;br /&gt;
your nerve fibers.&lt;br /&gt;
The commercial available drug format is [http://http://www.avonex.com/ Avonex].(Please refer to the drug guide before using it)&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;Mechanism of action for IFNβ-1a&#039;&#039;&#039;==&lt;br /&gt;
IFNβis encoded by a single gene&lt;br /&gt;
with no introns (and hence, no splice variants), and no reported&lt;br /&gt;
polymorphisms. Although IFNβwas originally called fibroblast&lt;br /&gt;
IFN–because fibroblasts could be induced to produce it in vitro–&lt;br /&gt;
numerous other cell types can express IFNβ, including endothelial&lt;br /&gt;
cells, epithelial cells and various leukocytes. Unlike IFNα,&lt;br /&gt;
where a particular subset of dendritic cells appears to be one of the&lt;br /&gt;
primary in vivo sources, a physiological source of IFNβhas not&lt;br /&gt;
been identified. Endogenous IFNβis not generally detected at&lt;br /&gt;
significant levels in humans. So called “natural” human IFNβ&lt;br /&gt;
(expressed by fibroblasts in vitro), is glycosylated at one site with&lt;br /&gt;
an N-linked complex carbohydrate, the exact structure of which&lt;br /&gt;
can be influenced by growth conditions and the cell type&lt;br /&gt;
producing the IFN. While important for monomer stability,&lt;br /&gt;
solubility and, perhaps biodistribution, the carbohydrate moiety&lt;br /&gt;
does not appear to be required for receptor binding.&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The IFNβreceptor, signaling cascade and gene regulation&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
The IFNβreceptor is composed of 2 required chains—a signaling&lt;br /&gt;
chain, IFNAR1, and a binding chain, IFNAR2. Both IFNAR1 and&lt;br /&gt;
IFNAR2 are constitutively expressed on the surface of virtually all cells. IFNβcan bind to IFNAR2 alone, but can bind to IFNAR1 only in&lt;br /&gt;
the presence of IFNAR2. The strength of IFNβbinding to its&lt;br /&gt;
receptor is much higher when both subunits are present.&lt;br /&gt;
Knockout experiments indicate that both IFNAR1 and IFNAR2 are&lt;br /&gt;
required for IFNβ activity, but it remains uncertain&lt;br /&gt;
whether there are auxiliary receptors or alternative receptor/&lt;br /&gt;
signaling complexes in some cell types.&lt;br /&gt;
The current view of events leading to IFNβbiological activity is&lt;br /&gt;
as follows (Fig. 1A): 1) IFN binds to the extracellular domain of&lt;br /&gt;
IFNAR2. 2) IFNAR1 then engages with the IFNβ–IFNAR2 complex,&lt;br /&gt;
forming the high-affinity receptor–ligand complex and allowing&lt;br /&gt;
the intracellular domains of the two receptor chains and&lt;br /&gt;
associated proteins to interact. 3) This interaction, which includes&lt;br /&gt;
JAK1 (associated with IFNAR2) and Tyk2 (associated with IFNAR1),&lt;br /&gt;
results in a cascade of phosphorylation events that leads to&lt;br /&gt;
activation of STATS. 4) Activated STATS form a complex with other&lt;br /&gt;
cytoplasmic proteins, which then translocate into the nucleus to&lt;br /&gt;
bind to Interferon Sensitive Response Elements (ISRE), transcriptional control regions which are upstream of many IFN regulated&lt;br /&gt;
genes. 5) This ISRE binding results in transcriptional regulation&lt;br /&gt;
(both induction and inhibition) of &amp;gt;1000 genes.&lt;br /&gt;
Thus, IFN regulates expression of a myriad of genes. While the&lt;br /&gt;
function of some of these genes is clear (e.g. the antiviral product&lt;br /&gt;
MxA), the specific transcripts mediating therapeutic benefit of&lt;br /&gt;
IFNβin MS are unknown. This is, in part, due to the complexity and&lt;br /&gt;
heterogeneity of MS, but also because IFNβis an agonist that can&lt;br /&gt;
induce the expression not only of ISRE regulated genes, but&lt;br /&gt;
through newly expressed transcription factors, can induce or&lt;br /&gt;
inhibit subsequent waves of gene expression. In addition, some&lt;br /&gt;
IFNβregulated proteins, which include cytokines and chemokines,&lt;br /&gt;
can alter the level or function of particular cell populations. The&lt;br /&gt;
resulting multifaceted biological response is in contrast to&lt;br /&gt;
therapies such as monoclonal antibodies that have a much more&lt;br /&gt;
specific molecular target. Thus, as shown inFig. 1B, IFNβmay exert&lt;br /&gt;
its therapeutic effects in two distinct ways: 1) direct effects of IFNβ&lt;br /&gt;
regulated gene products; or 2) indirect effects of IFN-regulated gene products, via effects on other genes (e.g. transcription&lt;br /&gt;
factors), or by altering populations or functions of cells including&lt;br /&gt;
Type 2 dendritic cells, monocytes, regulatory T-cells and CD56&lt;br /&gt;
bright NK cells[2-9].&lt;br /&gt;
[[Image:Mechanism of action of IFN.jpg]]&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;Reference&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
[1] R. Arduini, K. Strauch, L. Rukel etal.Characterization of a soluble ternary complex formed&lt;br /&gt;
between human interferon-b-1a and its receptor chains&#039;&#039;Protein Science&#039;&#039; (1999),&#039;&#039;8&#039;&#039;:1867–1877&lt;br /&gt;
&lt;br /&gt;
[2] T. Taniguchi, A. Takaoka, The interferon-alpha/beta system in&lt;br /&gt;
antiviral responses: a multimodal machinery of gene regulation&lt;br /&gt;
by the IRF family of transcription factors, Curr. Opin. Immunol.&lt;br /&gt;
14 (1) (Feb 2002) 111–116.&lt;br /&gt;
&lt;br /&gt;
[3] K. Kasama, J. Utsumi, E. Matsuo-Ogawa, T. Nagahata, Y. Kagawa,&lt;br /&gt;
S. Yamazaki, et al., Pharmacokinetics and biologic activities of&lt;br /&gt;
human native and asialointerferon-beta s, J. Interferon Cytokine&lt;br /&gt;
Res. 15 (5) (May 1995) 407–415.&lt;br /&gt;
&lt;br /&gt;
[4] L. Runkel, W. Meier, R.B. Pepinsky, M. Karpusas, A. Whitty,&lt;br /&gt;
K. Kimball, et al., Structural and functional differences between&lt;br /&gt;
glycosylated and non-glycosylated forms of human&lt;br /&gt;
interferon-beta (IFN-beta), Pharm. Res. 15 (4) (Apr 1998)&lt;br /&gt;
641–649.&lt;br /&gt;
&lt;br /&gt;
[5] R.M. Arduini, K.L. Strauch, L.A. Runkel, M.M. Carlson, X.&lt;br /&gt;
Hronowski, S.F. Foley, et al., Characterization of a soluble&lt;br /&gt;
ternary complex formed between human interferon-beta-1a&lt;br /&gt;
and its receptor chains, Protein Sci. 8 (9) (Sep 1999)&lt;br /&gt;
1867–1877.&lt;br /&gt;
&lt;br /&gt;
[6] G. Uze, G. Schreiber, J. Piehler, S. Pellegrini, The receptor of the&lt;br /&gt;
type I interferon family, Curr. Top. Microbiol. Immunol. 316&lt;br /&gt;
(2007) 71–95.&lt;br /&gt;
&lt;br /&gt;
[7] C.M. Cleary, R.J. Donnelly, J. Soh, T.M. Mariano, S. Pestka,&lt;br /&gt;
Knockout and reconstitution of a functional human type I&lt;br /&gt;
interferon receptor complex, J. Biol. Chem. 269 (29)&lt;br /&gt;
(Jul 22 1994) 18747–18749.&lt;br /&gt;
&lt;br /&gt;
[8] J. Kumaran, O.R. Colamonici, E.N. Fish, Structure–function study&lt;br /&gt;
of the extracellular domain of the human type I interferon&lt;br /&gt;
receptor (IFNAR)-1 subunit, J. Interferon Cytokine Res. 20 (5)&lt;br /&gt;
(May 2000) 479–485.&lt;br /&gt;
&lt;br /&gt;
[9] J. Ghislain, G. Sussman, S. Goelz, L.E. Ling, E.N. Fish, Configuration&lt;br /&gt;
of the interferon-alpha/beta receptor complex determines the&lt;br /&gt;
context of the biological response, J. Biol. Chem. 270 (37)&lt;br /&gt;
(Sep 15 1995) 21785–21792.&lt;/div&gt;</summary>
		<author><name>Chengfeng Ren</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Chengfeng_Ren/Sandbox1&amp;diff=1873144</id>
		<title>Chengfeng Ren/Sandbox1</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Chengfeng_Ren/Sandbox1&amp;diff=1873144"/>
		<updated>2013-12-06T17:32:03Z</updated>

		<summary type="html">&lt;p&gt;Chengfeng Ren: /* &amp;#039;&amp;#039;&amp;#039;Mechanism of action for IFNβ-1a&amp;#039;&amp;#039;&amp;#039; */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;==&#039;&#039;&#039;IFN Categories and IFNβ-1a sources&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
Interferons (IFNs) are a family of helical cytokines that mediate&lt;br /&gt;
antiviral, antiproliferative, and immune modulatory activities in&lt;br /&gt;
response to biological and chemical stimuli. Two types of IFN are recognized on   &lt;br /&gt;
the basis of their physical and biological properties; type I, which   &lt;br /&gt;
contains the monomeric IFNs-α,-β,-τ, and -ω, and type II, the&lt;br /&gt;
only member of which is the dimeric IFN-γ. Representatives of all&lt;br /&gt;
type I and type II IFNs are found in humans, except for IFN-τ,&lt;br /&gt;
which is found only in ruminant ungulates. There are 12 different human IFNs-α;each one&lt;br /&gt;
comprising a different subtype,although 14 different genes have&lt;br /&gt;
been identified, whereas human IFN-β, IFN-ω, and IFN-γare&lt;br /&gt;
encoded by single genes[1].&lt;br /&gt;
&lt;br /&gt;
Interferon-βhas two subtyes, interferon-β-1a and interferon-β-1b. Interferon-β-1a is naturally expressed in numerous cell types in human, including &lt;br /&gt;
fibroblasts, endothelial cells, epithelial cells and various leukocytes, however,Interferon-β-1b is produced in modified E. coli.&lt;br /&gt;
&lt;br /&gt;
Here is a jpg clearly illustrating IFNs categories.&lt;br /&gt;
[[Image:IFN categories.jpg]]&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;Structure info. of IFNβ-1a&#039;&#039;&#039;==&lt;br /&gt;
IFNβ-1a consisting of 166 amino acids, around 20KDa. It has 5 helixs.&lt;br /&gt;
&amp;lt;Structure load=&#039;1au1&#039; size=&#039;500&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;IFN structure from PDB&#039; scene=&#039;IFN scene_structure&#039; /&amp;gt;&lt;br /&gt;
&amp;lt;scene name=&#039;56/566498/Ifn_beta_1a_scene_structure/1&#039;&amp;gt;IFN beta 1a structure&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;IFNβ-1a biological activity and therapeutic effects&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
IFNβ-1a as well as other family of IFNs has a variety of biological activities, inluding antiviral, antiproliferative, and immune modulatory activities in response to biological and chemical stimuli. &lt;br /&gt;
&lt;br /&gt;
IFNβ-1a is mainly used to treat relapsing forms of multiple sclerosis(MS).&lt;br /&gt;
MS is a life-long disease that affects your nervous system &lt;br /&gt;
by destroying the protective covering (myelin) that surrounds&lt;br /&gt;
your nerve fibers.&lt;br /&gt;
The commercial available drug format is [http://http://www.avonex.com/ Avonex].(Please refer to the drug guide before using it)&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;Mechanism of action for IFNβ-1a&#039;&#039;&#039;==&lt;br /&gt;
IFNβis encoded by a single gene&lt;br /&gt;
with no introns (and hence, no splice variants), and no reported&lt;br /&gt;
polymorphisms. Although IFNβwas originally called fibroblast&lt;br /&gt;
IFN–because fibroblasts could be induced to produce it in vitro–&lt;br /&gt;
numerous other cell types can express IFNβ, including endothelial&lt;br /&gt;
cells, epithelial cells and various leukocytes. Unlike IFNα,&lt;br /&gt;
where a particular subset of dendritic cells appears to be one of the&lt;br /&gt;
primary in vivo sources, a physiological source of IFNβhas not&lt;br /&gt;
been identified. Endogenous IFNβis not generally detected at&lt;br /&gt;
significant levels in humans. So called “natural” human IFNβ&lt;br /&gt;
(expressed by fibroblasts in vitro), is glycosylated at one site with&lt;br /&gt;
an N-linked complex carbohydrate, the exact structure of which&lt;br /&gt;
can be influenced by growth conditions and the cell type&lt;br /&gt;
producing the IFN. While important for monomer stability,&lt;br /&gt;
solubility and, perhaps biodistribution, the carbohydrate moiety&lt;br /&gt;
does not appear to be required for receptor binding.&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The IFNβreceptor, signaling cascade and gene regulation&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
The IFNβreceptor is composed of 2 required chains—a signaling&lt;br /&gt;
chain, IFNAR1, and a binding chain, IFNAR2. Both IFNAR1 and&lt;br /&gt;
IFNAR2 are constitutively expressed on the surface of virtually all cells. IFNβcan bind to IFNAR2 alone, but can bind to IFNAR1 only in&lt;br /&gt;
the presence of IFNAR2. The strength of IFNβbinding to its&lt;br /&gt;
receptor is much higher when both subunits are present.&lt;br /&gt;
Knockout experiments indicate that both IFNAR1 and IFNAR2 are&lt;br /&gt;
required for IFNβ activity, but it remains uncertain&lt;br /&gt;
whether there are auxiliary receptors or alternative receptor/&lt;br /&gt;
signaling complexes in some cell types.&lt;br /&gt;
The current view of events leading to IFNβbiological activity is&lt;br /&gt;
as follows (Fig. 1A): 1) IFN binds to the extracellular domain of&lt;br /&gt;
IFNAR2. 2) IFNAR1 then engages with the IFNβ–IFNAR2 complex,&lt;br /&gt;
forming the high-affinity receptor–ligand complex and allowing&lt;br /&gt;
the intracellular domains of the two receptor chains and&lt;br /&gt;
associated proteins to interact. 3) This interaction, which includes&lt;br /&gt;
JAK1 (associated with IFNAR2) and Tyk2 (associated with IFNAR1),&lt;br /&gt;
results in a cascade of phosphorylation events that leads to&lt;br /&gt;
activation of STATS. 4) Activated STATS form a complex with other&lt;br /&gt;
cytoplasmic proteins, which then translocate into the nucleus to&lt;br /&gt;
bind to Interferon Sensitive Response Elements (ISRE), transcriptional control regions which are upstream of many IFN regulated&lt;br /&gt;
genes. 5) This ISRE binding results in transcriptional regulation&lt;br /&gt;
(both induction and inhibition) of &amp;gt;1000 genes.&lt;br /&gt;
Thus, IFN regulates expression of a myriad of genes. While the&lt;br /&gt;
function of some of these genes is clear (e.g. the antiviral product&lt;br /&gt;
MxA), the specific transcripts mediating therapeutic benefit of&lt;br /&gt;
IFNβin MS are unknown. This is, in part, due to the complexity and&lt;br /&gt;
heterogeneity of MS, but also because IFNβis an agonist that can&lt;br /&gt;
induce the expression not only of ISRE regulated genes, but&lt;br /&gt;
through newly expressed transcription factors, can induce or&lt;br /&gt;
inhibit subsequent waves of gene expression. In addition, some&lt;br /&gt;
IFNβregulated proteins, which include cytokines and chemokines,&lt;br /&gt;
can alter the level or function of particular cell populations. The&lt;br /&gt;
resulting multifaceted biological response is in contrast to&lt;br /&gt;
therapies such as monoclonal antibodies that have a much more&lt;br /&gt;
specific molecular target. Thus, as shown inFig. 1B, IFNβmay exert&lt;br /&gt;
its therapeutic effects in two distinct ways: 1) direct effects of IFNβ&lt;br /&gt;
regulated gene products; or 2) indirect effects of IFN-regulated gene products, via effects on other genes (e.g. transcription&lt;br /&gt;
factors), or by altering populations or functions of cells including&lt;br /&gt;
Type 2 dendritic cells, monocytes, regulatory T-cells and CD56&lt;br /&gt;
bright NK cells[2-9].&lt;br /&gt;
[[Image:Mechanism of action of IFN.jpg]]&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;Reference&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
[1] R. Arduini, K. Strauch, L. Rukel etal.Characterization of a soluble ternary complex formed&lt;br /&gt;
between human interferon-b-1a and its receptor chains&#039;&#039;Protein Science&#039;&#039; (1999),&#039;&#039;8&#039;&#039;:1867–1877&lt;br /&gt;
&lt;br /&gt;
[2] T. Taniguchi, A. Takaoka, The interferon-alpha/beta system in&lt;br /&gt;
antiviral responses: a multimodal machinery of gene regulation&lt;br /&gt;
by the IRF family of transcription factors, Curr. Opin. Immunol.&lt;br /&gt;
14 (1) (Feb 2002) 111–116.&lt;br /&gt;
&lt;br /&gt;
[3] K. Kasama, J. Utsumi, E. Matsuo-Ogawa, T. Nagahata, Y. Kagawa,&lt;br /&gt;
S. Yamazaki, et al., Pharmacokinetics and biologic activities of&lt;br /&gt;
human native and asialointerferon-beta s, J. Interferon Cytokine&lt;br /&gt;
Res. 15 (5) (May 1995) 407–415.&lt;br /&gt;
&lt;br /&gt;
[4] L. Runkel, W. Meier, R.B. Pepinsky, M. Karpusas, A. Whitty,&lt;br /&gt;
K. Kimball, et al., Structural and functional differences between&lt;br /&gt;
glycosylated and non-glycosylated forms of human&lt;br /&gt;
interferon-beta (IFN-beta), Pharm. Res. 15 (4) (Apr 1998)&lt;br /&gt;
641–649.&lt;br /&gt;
&lt;br /&gt;
[5] R.M. Arduini, K.L. Strauch, L.A. Runkel, M.M. Carlson, X.&lt;br /&gt;
Hronowski, S.F. Foley, et al., Characterization of a soluble&lt;br /&gt;
ternary complex formed between human interferon-beta-1a&lt;br /&gt;
and its receptor chains, Protein Sci. 8 (9) (Sep 1999)&lt;br /&gt;
1867–1877.&lt;br /&gt;
&lt;br /&gt;
[6] G. Uze, G. Schreiber, J. Piehler, S. Pellegrini, The receptor of the&lt;br /&gt;
type I interferon family, Curr. Top. Microbiol. Immunol. 316&lt;br /&gt;
(2007) 71–95.&lt;br /&gt;
&lt;br /&gt;
[7] C.M. Cleary, R.J. Donnelly, J. Soh, T.M. Mariano, S. Pestka,&lt;br /&gt;
Knockout and reconstitution of a functional human type I&lt;br /&gt;
interferon receptor complex, J. Biol. Chem. 269 (29)&lt;br /&gt;
(Jul 22 1994) 18747–18749.&lt;br /&gt;
&lt;br /&gt;
[8] J. Kumaran, O.R. Colamonici, E.N. Fish, Structure–function study&lt;br /&gt;
of the extracellular domain of the human type I interferon&lt;br /&gt;
receptor (IFNAR)-1 subunit, J. Interferon Cytokine Res. 20 (5)&lt;br /&gt;
(May 2000) 479–485.&lt;br /&gt;
&lt;br /&gt;
[9] J. Ghislain, G. Sussman, S. Goelz, L.E. Ling, E.N. Fish, Configuration&lt;br /&gt;
of the interferon-alpha/beta receptor complex determines the&lt;br /&gt;
context of the biological response, J. Biol. Chem. 270 (37)&lt;br /&gt;
(Sep 15 1995) 21785–21792.&lt;/div&gt;</summary>
		<author><name>Chengfeng Ren</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Chengfeng_Ren/Sandbox1&amp;diff=1873141</id>
		<title>Chengfeng Ren/Sandbox1</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Chengfeng_Ren/Sandbox1&amp;diff=1873141"/>
		<updated>2013-12-06T17:30:45Z</updated>

		<summary type="html">&lt;p&gt;Chengfeng Ren: /* &amp;#039;&amp;#039;&amp;#039;Reference&amp;#039;&amp;#039;&amp;#039; */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;==&#039;&#039;&#039;IFN Categories and IFNβ-1a sources&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
Interferons (IFNs) are a family of helical cytokines that mediate&lt;br /&gt;
antiviral, antiproliferative, and immune modulatory activities in&lt;br /&gt;
response to biological and chemical stimuli. Two types of IFN are recognized on   &lt;br /&gt;
the basis of their physical and biological properties; type I, which   &lt;br /&gt;
contains the monomeric IFNs-α,-β,-τ, and -ω, and type II, the&lt;br /&gt;
only member of which is the dimeric IFN-γ. Representatives of all&lt;br /&gt;
type I and type II IFNs are found in humans, except for IFN-τ,&lt;br /&gt;
which is found only in ruminant ungulates. There are 12 different human IFNs-α;each one&lt;br /&gt;
comprising a different subtype,although 14 different genes have&lt;br /&gt;
been identified, whereas human IFN-β, IFN-ω, and IFN-γare&lt;br /&gt;
encoded by single genes[1].&lt;br /&gt;
&lt;br /&gt;
Interferon-βhas two subtyes, interferon-β-1a and interferon-β-1b. Interferon-β-1a is naturally expressed in numerous cell types in human, including &lt;br /&gt;
fibroblasts, endothelial cells, epithelial cells and various leukocytes, however,Interferon-β-1b is produced in modified E. coli.&lt;br /&gt;
&lt;br /&gt;
Here is a jpg clearly illustrating IFNs categories.&lt;br /&gt;
[[Image:IFN categories.jpg]]&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;Structure info. of IFNβ-1a&#039;&#039;&#039;==&lt;br /&gt;
IFNβ-1a consisting of 166 amino acids, around 20KDa. It has 5 helixs.&lt;br /&gt;
&amp;lt;Structure load=&#039;1au1&#039; size=&#039;500&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;IFN structure from PDB&#039; scene=&#039;IFN scene_structure&#039; /&amp;gt;&lt;br /&gt;
&amp;lt;scene name=&#039;56/566498/Ifn_beta_1a_scene_structure/1&#039;&amp;gt;IFN beta 1a structure&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;IFNβ-1a biological activity and therapeutic effects&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
IFNβ-1a as well as other family of IFNs has a variety of biological activities, inluding antiviral, antiproliferative, and immune modulatory activities in response to biological and chemical stimuli. &lt;br /&gt;
&lt;br /&gt;
IFNβ-1a is mainly used to treat relapsing forms of multiple sclerosis(MS).&lt;br /&gt;
MS is a life-long disease that affects your nervous system &lt;br /&gt;
by destroying the protective covering (myelin) that surrounds&lt;br /&gt;
your nerve fibers.&lt;br /&gt;
The commercial available drug format is [http://http://www.avonex.com/ Avonex].(Please refer to the drug guide before using it)&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;Mechanism of action for IFNβ-1a&#039;&#039;&#039;==&lt;br /&gt;
IFNβis encoded by a single gene&lt;br /&gt;
with no introns (and hence, no splice variants), and no reported&lt;br /&gt;
polymorphisms. Although IFNβwas originally called fibroblast&lt;br /&gt;
IFN–because fibroblasts could be induced to produce it in vitro–&lt;br /&gt;
numerous other cell types can express IFNβ, including endothelial&lt;br /&gt;
cells, epithelial cells and various leukocytes. Unlike IFNα,&lt;br /&gt;
where a particular subset of dendritic cells appears to be one of the&lt;br /&gt;
primary in vivo sources, a physiological source of IFNβhas not&lt;br /&gt;
been identified. Endogenous IFNβis not generally detected at&lt;br /&gt;
significant levels in humans. So called “natural” human IFNβ&lt;br /&gt;
(expressed by fibroblasts in vitro), is glycosylated at one site with&lt;br /&gt;
an N-linked complex carbohydrate, the exact structure of which&lt;br /&gt;
can be influenced by growth conditions and the cell type&lt;br /&gt;
producing the IFN. While important for monomer stability,&lt;br /&gt;
solubility and, perhaps biodistribution, the carbohydrate moiety&lt;br /&gt;
does not appear to be required for receptor binding.&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The IFNβreceptor, signaling cascade and gene regulation&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
The IFNβreceptor is composed of 2 required chains—a signaling&lt;br /&gt;
chain, IFNAR1, and a binding chain, IFNAR2. Both IFNAR1 and&lt;br /&gt;
IFNAR2 are constitutively expressed on the surface of virtually all cells. IFNβcan bind to IFNAR2 alone, but can bind to IFNAR1 only in&lt;br /&gt;
the presence of IFNAR2. The strength of IFNβbinding to its&lt;br /&gt;
receptor is much higher when both subunits are present.&lt;br /&gt;
Knockout experiments indicate that both IFNAR1 and IFNAR2 are&lt;br /&gt;
required for IFNβ activity, but it remains uncertain&lt;br /&gt;
whether there are auxiliary receptors or alternative receptor/&lt;br /&gt;
signaling complexes in some cell types.&lt;br /&gt;
The current view of events leading to IFNβbiological activity is&lt;br /&gt;
as follows (Fig. 1A): 1) IFN binds to the extracellular domain of&lt;br /&gt;
IFNAR2. 2) IFNAR1 then engages with the IFNβ–IFNAR2 complex,&lt;br /&gt;
forming the high-affinity receptor–ligand complex and allowing&lt;br /&gt;
the intracellular domains of the two receptor chains and&lt;br /&gt;
associated proteins to interact. 3) This interaction, which includes&lt;br /&gt;
JAK1 (associated with IFNAR2) and Tyk2 (associated with IFNAR1),&lt;br /&gt;
results in a cascade of phosphorylation events that leads to&lt;br /&gt;
activation of STATS. 4) Activated STATS form a complex with other&lt;br /&gt;
cytoplasmic proteins, which then translocate into the nucleus to&lt;br /&gt;
bind to Interferon Sensitive Response Elements (ISRE), transcriptional control regions which are upstream of many IFN regulated&lt;br /&gt;
genes. 5) This ISRE binding results in transcriptional regulation&lt;br /&gt;
(both induction and inhibition) of &amp;gt;1000 genes.&lt;br /&gt;
Thus, IFN regulates expression of a myriad of genes. While the&lt;br /&gt;
function of some of these genes is clear (e.g. the antiviral product&lt;br /&gt;
MxA), the specific transcripts mediating therapeutic benefit of&lt;br /&gt;
IFNβin MS are unknown. This is, in part, due to the complexity and&lt;br /&gt;
heterogeneity of MS, but also because IFNβis an agonist that can&lt;br /&gt;
induce the expression not only of ISRE regulated genes, but&lt;br /&gt;
through newly expressed transcription factors, can induce or&lt;br /&gt;
inhibit subsequent waves of gene expression. In addition, some&lt;br /&gt;
IFNβregulated proteins, which include cytokines and chemokines,&lt;br /&gt;
can alter the level or function of particular cell populations. The&lt;br /&gt;
resulting multifaceted biological response is in contrast to&lt;br /&gt;
therapies such as monoclonal antibodies that have a much more&lt;br /&gt;
specific molecular target. Thus, as shown inFig. 1B, IFNβmay exert&lt;br /&gt;
its therapeutic effects in two distinct ways: 1) direct effects of IFNβ&lt;br /&gt;
regulated gene products; or 2) indirect effects of IFN-regulated gene products, via effects on other genes (e.g. transcription&lt;br /&gt;
factors), or by altering populations or functions of cells including&lt;br /&gt;
Type 2 dendritic cells, monocytes, regulatory T-cells and CD56&lt;br /&gt;
bright NK cells.&lt;br /&gt;
[[Image:Mechanism of action of IFN.jpg]]&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;Reference&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
[1] R. Arduini, K. Strauch, L. Rukel etal.Characterization of a soluble ternary complex formed&lt;br /&gt;
between human interferon-b-1a and its receptor chains&#039;&#039;Protein Science&#039;&#039; (1999),&#039;&#039;8&#039;&#039;:1867–1877&lt;br /&gt;
&lt;br /&gt;
[2] T. Taniguchi, A. Takaoka, The interferon-alpha/beta system in&lt;br /&gt;
antiviral responses: a multimodal machinery of gene regulation&lt;br /&gt;
by the IRF family of transcription factors, Curr. Opin. Immunol.&lt;br /&gt;
14 (1) (Feb 2002) 111–116.&lt;br /&gt;
&lt;br /&gt;
[3] K. Kasama, J. Utsumi, E. Matsuo-Ogawa, T. Nagahata, Y. Kagawa,&lt;br /&gt;
S. Yamazaki, et al., Pharmacokinetics and biologic activities of&lt;br /&gt;
human native and asialointerferon-beta s, J. Interferon Cytokine&lt;br /&gt;
Res. 15 (5) (May 1995) 407–415.&lt;br /&gt;
&lt;br /&gt;
[4] L. Runkel, W. Meier, R.B. Pepinsky, M. Karpusas, A. Whitty,&lt;br /&gt;
K. Kimball, et al., Structural and functional differences between&lt;br /&gt;
glycosylated and non-glycosylated forms of human&lt;br /&gt;
interferon-beta (IFN-beta), Pharm. Res. 15 (4) (Apr 1998)&lt;br /&gt;
641–649.&lt;br /&gt;
&lt;br /&gt;
[5] R.M. Arduini, K.L. Strauch, L.A. Runkel, M.M. Carlson, X.&lt;br /&gt;
Hronowski, S.F. Foley, et al., Characterization of a soluble&lt;br /&gt;
ternary complex formed between human interferon-beta-1a&lt;br /&gt;
and its receptor chains, Protein Sci. 8 (9) (Sep 1999)&lt;br /&gt;
1867–1877.&lt;br /&gt;
&lt;br /&gt;
[6] G. Uze, G. Schreiber, J. Piehler, S. Pellegrini, The receptor of the&lt;br /&gt;
type I interferon family, Curr. Top. Microbiol. Immunol. 316&lt;br /&gt;
(2007) 71–95.&lt;br /&gt;
&lt;br /&gt;
[7] C.M. Cleary, R.J. Donnelly, J. Soh, T.M. Mariano, S. Pestka,&lt;br /&gt;
Knockout and reconstitution of a functional human type I&lt;br /&gt;
interferon receptor complex, J. Biol. Chem. 269 (29)&lt;br /&gt;
(Jul 22 1994) 18747–18749.&lt;br /&gt;
&lt;br /&gt;
[8] J. Kumaran, O.R. Colamonici, E.N. Fish, Structure–function study&lt;br /&gt;
of the extracellular domain of the human type I interferon&lt;br /&gt;
receptor (IFNAR)-1 subunit, J. Interferon Cytokine Res. 20 (5)&lt;br /&gt;
(May 2000) 479–485.&lt;br /&gt;
&lt;br /&gt;
[9] J. Ghislain, G. Sussman, S. Goelz, L.E. Ling, E.N. Fish, Configuration&lt;br /&gt;
of the interferon-alpha/beta receptor complex determines the&lt;br /&gt;
context of the biological response, J. Biol. Chem. 270 (37)&lt;br /&gt;
(Sep 15 1995) 21785–21792.&lt;/div&gt;</summary>
		<author><name>Chengfeng Ren</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Chengfeng_Ren/Sandbox1&amp;diff=1873140</id>
		<title>Chengfeng Ren/Sandbox1</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Chengfeng_Ren/Sandbox1&amp;diff=1873140"/>
		<updated>2013-12-06T17:30:21Z</updated>

		<summary type="html">&lt;p&gt;Chengfeng Ren: /* &amp;#039;&amp;#039;&amp;#039;Reference&amp;#039;&amp;#039;&amp;#039; */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;==&#039;&#039;&#039;IFN Categories and IFNβ-1a sources&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
Interferons (IFNs) are a family of helical cytokines that mediate&lt;br /&gt;
antiviral, antiproliferative, and immune modulatory activities in&lt;br /&gt;
response to biological and chemical stimuli. Two types of IFN are recognized on   &lt;br /&gt;
the basis of their physical and biological properties; type I, which   &lt;br /&gt;
contains the monomeric IFNs-α,-β,-τ, and -ω, and type II, the&lt;br /&gt;
only member of which is the dimeric IFN-γ. Representatives of all&lt;br /&gt;
type I and type II IFNs are found in humans, except for IFN-τ,&lt;br /&gt;
which is found only in ruminant ungulates. There are 12 different human IFNs-α;each one&lt;br /&gt;
comprising a different subtype,although 14 different genes have&lt;br /&gt;
been identified, whereas human IFN-β, IFN-ω, and IFN-γare&lt;br /&gt;
encoded by single genes[1].&lt;br /&gt;
&lt;br /&gt;
Interferon-βhas two subtyes, interferon-β-1a and interferon-β-1b. Interferon-β-1a is naturally expressed in numerous cell types in human, including &lt;br /&gt;
fibroblasts, endothelial cells, epithelial cells and various leukocytes, however,Interferon-β-1b is produced in modified E. coli.&lt;br /&gt;
&lt;br /&gt;
Here is a jpg clearly illustrating IFNs categories.&lt;br /&gt;
[[Image:IFN categories.jpg]]&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;Structure info. of IFNβ-1a&#039;&#039;&#039;==&lt;br /&gt;
IFNβ-1a consisting of 166 amino acids, around 20KDa. It has 5 helixs.&lt;br /&gt;
&amp;lt;Structure load=&#039;1au1&#039; size=&#039;500&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;IFN structure from PDB&#039; scene=&#039;IFN scene_structure&#039; /&amp;gt;&lt;br /&gt;
&amp;lt;scene name=&#039;56/566498/Ifn_beta_1a_scene_structure/1&#039;&amp;gt;IFN beta 1a structure&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;IFNβ-1a biological activity and therapeutic effects&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
IFNβ-1a as well as other family of IFNs has a variety of biological activities, inluding antiviral, antiproliferative, and immune modulatory activities in response to biological and chemical stimuli. &lt;br /&gt;
&lt;br /&gt;
IFNβ-1a is mainly used to treat relapsing forms of multiple sclerosis(MS).&lt;br /&gt;
MS is a life-long disease that affects your nervous system &lt;br /&gt;
by destroying the protective covering (myelin) that surrounds&lt;br /&gt;
your nerve fibers.&lt;br /&gt;
The commercial available drug format is [http://http://www.avonex.com/ Avonex].(Please refer to the drug guide before using it)&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;Mechanism of action for IFNβ-1a&#039;&#039;&#039;==&lt;br /&gt;
IFNβis encoded by a single gene&lt;br /&gt;
with no introns (and hence, no splice variants), and no reported&lt;br /&gt;
polymorphisms. Although IFNβwas originally called fibroblast&lt;br /&gt;
IFN–because fibroblasts could be induced to produce it in vitro–&lt;br /&gt;
numerous other cell types can express IFNβ, including endothelial&lt;br /&gt;
cells, epithelial cells and various leukocytes. Unlike IFNα,&lt;br /&gt;
where a particular subset of dendritic cells appears to be one of the&lt;br /&gt;
primary in vivo sources, a physiological source of IFNβhas not&lt;br /&gt;
been identified. Endogenous IFNβis not generally detected at&lt;br /&gt;
significant levels in humans. So called “natural” human IFNβ&lt;br /&gt;
(expressed by fibroblasts in vitro), is glycosylated at one site with&lt;br /&gt;
an N-linked complex carbohydrate, the exact structure of which&lt;br /&gt;
can be influenced by growth conditions and the cell type&lt;br /&gt;
producing the IFN. While important for monomer stability,&lt;br /&gt;
solubility and, perhaps biodistribution, the carbohydrate moiety&lt;br /&gt;
does not appear to be required for receptor binding.&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The IFNβreceptor, signaling cascade and gene regulation&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
The IFNβreceptor is composed of 2 required chains—a signaling&lt;br /&gt;
chain, IFNAR1, and a binding chain, IFNAR2. Both IFNAR1 and&lt;br /&gt;
IFNAR2 are constitutively expressed on the surface of virtually all cells. IFNβcan bind to IFNAR2 alone, but can bind to IFNAR1 only in&lt;br /&gt;
the presence of IFNAR2. The strength of IFNβbinding to its&lt;br /&gt;
receptor is much higher when both subunits are present.&lt;br /&gt;
Knockout experiments indicate that both IFNAR1 and IFNAR2 are&lt;br /&gt;
required for IFNβ activity, but it remains uncertain&lt;br /&gt;
whether there are auxiliary receptors or alternative receptor/&lt;br /&gt;
signaling complexes in some cell types.&lt;br /&gt;
The current view of events leading to IFNβbiological activity is&lt;br /&gt;
as follows (Fig. 1A): 1) IFN binds to the extracellular domain of&lt;br /&gt;
IFNAR2. 2) IFNAR1 then engages with the IFNβ–IFNAR2 complex,&lt;br /&gt;
forming the high-affinity receptor–ligand complex and allowing&lt;br /&gt;
the intracellular domains of the two receptor chains and&lt;br /&gt;
associated proteins to interact. 3) This interaction, which includes&lt;br /&gt;
JAK1 (associated with IFNAR2) and Tyk2 (associated with IFNAR1),&lt;br /&gt;
results in a cascade of phosphorylation events that leads to&lt;br /&gt;
activation of STATS. 4) Activated STATS form a complex with other&lt;br /&gt;
cytoplasmic proteins, which then translocate into the nucleus to&lt;br /&gt;
bind to Interferon Sensitive Response Elements (ISRE), transcriptional control regions which are upstream of many IFN regulated&lt;br /&gt;
genes. 5) This ISRE binding results in transcriptional regulation&lt;br /&gt;
(both induction and inhibition) of &amp;gt;1000 genes.&lt;br /&gt;
Thus, IFN regulates expression of a myriad of genes. While the&lt;br /&gt;
function of some of these genes is clear (e.g. the antiviral product&lt;br /&gt;
MxA), the specific transcripts mediating therapeutic benefit of&lt;br /&gt;
IFNβin MS are unknown. This is, in part, due to the complexity and&lt;br /&gt;
heterogeneity of MS, but also because IFNβis an agonist that can&lt;br /&gt;
induce the expression not only of ISRE regulated genes, but&lt;br /&gt;
through newly expressed transcription factors, can induce or&lt;br /&gt;
inhibit subsequent waves of gene expression. In addition, some&lt;br /&gt;
IFNβregulated proteins, which include cytokines and chemokines,&lt;br /&gt;
can alter the level or function of particular cell populations. The&lt;br /&gt;
resulting multifaceted biological response is in contrast to&lt;br /&gt;
therapies such as monoclonal antibodies that have a much more&lt;br /&gt;
specific molecular target. Thus, as shown inFig. 1B, IFNβmay exert&lt;br /&gt;
its therapeutic effects in two distinct ways: 1) direct effects of IFNβ&lt;br /&gt;
regulated gene products; or 2) indirect effects of IFN-regulated gene products, via effects on other genes (e.g. transcription&lt;br /&gt;
factors), or by altering populations or functions of cells including&lt;br /&gt;
Type 2 dendritic cells, monocytes, regulatory T-cells and CD56&lt;br /&gt;
bright NK cells.&lt;br /&gt;
[[Image:Mechanism of action of IFN.jpg]]&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;Reference&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
[1]R. Arduini, K. Strauch, L. Rukel etal.Characterization of a soluble ternary complex formed&lt;br /&gt;
between human interferon-b-1a and its receptor chains&#039;&#039;Protein Science&#039;&#039; (1999),&#039;&#039;8&#039;&#039;:1867–1877&lt;br /&gt;
&lt;br /&gt;
[2] T. Taniguchi, A. Takaoka, The interferon-alpha/beta system in&lt;br /&gt;
antiviral responses: a multimodal machinery of gene regulation&lt;br /&gt;
by the IRF family of transcription factors, Curr. Opin. Immunol.&lt;br /&gt;
14 (1) (Feb 2002) 111–116.&lt;br /&gt;
&lt;br /&gt;
[3] K. Kasama, J. Utsumi, E. Matsuo-Ogawa, T. Nagahata, Y. Kagawa,&lt;br /&gt;
S. Yamazaki, et al., Pharmacokinetics and biologic activities of&lt;br /&gt;
human native and asialointerferon-beta s, J. Interferon Cytokine&lt;br /&gt;
Res. 15 (5) (May 1995) 407–415.&lt;br /&gt;
&lt;br /&gt;
[4] L. Runkel, W. Meier, R.B. Pepinsky, M. Karpusas, A. Whitty,&lt;br /&gt;
K. Kimball, et al., Structural and functional differences between&lt;br /&gt;
glycosylated and non-glycosylated forms of human&lt;br /&gt;
interferon-beta (IFN-beta), Pharm. Res. 15 (4) (Apr 1998)&lt;br /&gt;
641–649.&lt;br /&gt;
&lt;br /&gt;
[5] R.M. Arduini, K.L. Strauch, L.A. Runkel, M.M. Carlson, X.&lt;br /&gt;
Hronowski, S.F. Foley, et al., Characterization of a soluble&lt;br /&gt;
ternary complex formed between human interferon-beta-1a&lt;br /&gt;
and its receptor chains, Protein Sci. 8 (9) (Sep 1999)&lt;br /&gt;
1867–1877.&lt;br /&gt;
&lt;br /&gt;
[6] G. Uze, G. Schreiber, J. Piehler, S. Pellegrini, The receptor of the&lt;br /&gt;
type I interferon family, Curr. Top. Microbiol. Immunol. 316&lt;br /&gt;
(2007) 71–95.&lt;br /&gt;
&lt;br /&gt;
[7] C.M. Cleary, R.J. Donnelly, J. Soh, T.M. Mariano, S. Pestka,&lt;br /&gt;
Knockout and reconstitution of a functional human type I&lt;br /&gt;
interferon receptor complex, J. Biol. Chem. 269 (29)&lt;br /&gt;
(Jul 22 1994) 18747–18749.&lt;br /&gt;
&lt;br /&gt;
[8] J. Kumaran, O.R. Colamonici, E.N. Fish, Structure–function study&lt;br /&gt;
of the extracellular domain of the human type I interferon&lt;br /&gt;
receptor (IFNAR)-1 subunit, J. Interferon Cytokine Res. 20 (5)&lt;br /&gt;
(May 2000) 479–485.&lt;br /&gt;
&lt;br /&gt;
[9] J. Ghislain, G. Sussman, S. Goelz, L.E. Ling, E.N. Fish, Configuration&lt;br /&gt;
of the interferon-alpha/beta receptor complex determines the&lt;br /&gt;
context of the biological response, J. Biol. Chem. 270 (37)&lt;br /&gt;
(Sep 15 1995) 21785–21792.&lt;/div&gt;</summary>
		<author><name>Chengfeng Ren</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Chengfeng_Ren/Sandbox1&amp;diff=1873138</id>
		<title>Chengfeng Ren/Sandbox1</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Chengfeng_Ren/Sandbox1&amp;diff=1873138"/>
		<updated>2013-12-06T17:29:47Z</updated>

		<summary type="html">&lt;p&gt;Chengfeng Ren: /* Reference */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;==&#039;&#039;&#039;IFN Categories and IFNβ-1a sources&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
Interferons (IFNs) are a family of helical cytokines that mediate&lt;br /&gt;
antiviral, antiproliferative, and immune modulatory activities in&lt;br /&gt;
response to biological and chemical stimuli. Two types of IFN are recognized on   &lt;br /&gt;
the basis of their physical and biological properties; type I, which   &lt;br /&gt;
contains the monomeric IFNs-α,-β,-τ, and -ω, and type II, the&lt;br /&gt;
only member of which is the dimeric IFN-γ. Representatives of all&lt;br /&gt;
type I and type II IFNs are found in humans, except for IFN-τ,&lt;br /&gt;
which is found only in ruminant ungulates. There are 12 different human IFNs-α;each one&lt;br /&gt;
comprising a different subtype,although 14 different genes have&lt;br /&gt;
been identified, whereas human IFN-β, IFN-ω, and IFN-γare&lt;br /&gt;
encoded by single genes[1].&lt;br /&gt;
&lt;br /&gt;
Interferon-βhas two subtyes, interferon-β-1a and interferon-β-1b. Interferon-β-1a is naturally expressed in numerous cell types in human, including &lt;br /&gt;
fibroblasts, endothelial cells, epithelial cells and various leukocytes, however,Interferon-β-1b is produced in modified E. coli.&lt;br /&gt;
&lt;br /&gt;
Here is a jpg clearly illustrating IFNs categories.&lt;br /&gt;
[[Image:IFN categories.jpg]]&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;Structure info. of IFNβ-1a&#039;&#039;&#039;==&lt;br /&gt;
IFNβ-1a consisting of 166 amino acids, around 20KDa. It has 5 helixs.&lt;br /&gt;
&amp;lt;Structure load=&#039;1au1&#039; size=&#039;500&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;IFN structure from PDB&#039; scene=&#039;IFN scene_structure&#039; /&amp;gt;&lt;br /&gt;
&amp;lt;scene name=&#039;56/566498/Ifn_beta_1a_scene_structure/1&#039;&amp;gt;IFN beta 1a structure&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;IFNβ-1a biological activity and therapeutic effects&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
IFNβ-1a as well as other family of IFNs has a variety of biological activities, inluding antiviral, antiproliferative, and immune modulatory activities in response to biological and chemical stimuli. &lt;br /&gt;
&lt;br /&gt;
IFNβ-1a is mainly used to treat relapsing forms of multiple sclerosis(MS).&lt;br /&gt;
MS is a life-long disease that affects your nervous system &lt;br /&gt;
by destroying the protective covering (myelin) that surrounds&lt;br /&gt;
your nerve fibers.&lt;br /&gt;
The commercial available drug format is [http://http://www.avonex.com/ Avonex].(Please refer to the drug guide before using it)&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;Mechanism of action for IFNβ-1a&#039;&#039;&#039;==&lt;br /&gt;
IFNβis encoded by a single gene&lt;br /&gt;
with no introns (and hence, no splice variants), and no reported&lt;br /&gt;
polymorphisms. Although IFNβwas originally called fibroblast&lt;br /&gt;
IFN–because fibroblasts could be induced to produce it in vitro–&lt;br /&gt;
numerous other cell types can express IFNβ, including endothelial&lt;br /&gt;
cells, epithelial cells and various leukocytes. Unlike IFNα,&lt;br /&gt;
where a particular subset of dendritic cells appears to be one of the&lt;br /&gt;
primary in vivo sources, a physiological source of IFNβhas not&lt;br /&gt;
been identified. Endogenous IFNβis not generally detected at&lt;br /&gt;
significant levels in humans. So called “natural” human IFNβ&lt;br /&gt;
(expressed by fibroblasts in vitro), is glycosylated at one site with&lt;br /&gt;
an N-linked complex carbohydrate, the exact structure of which&lt;br /&gt;
can be influenced by growth conditions and the cell type&lt;br /&gt;
producing the IFN. While important for monomer stability,&lt;br /&gt;
solubility and, perhaps biodistribution, the carbohydrate moiety&lt;br /&gt;
does not appear to be required for receptor binding.&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The IFNβreceptor, signaling cascade and gene regulation&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
The IFNβreceptor is composed of 2 required chains—a signaling&lt;br /&gt;
chain, IFNAR1, and a binding chain, IFNAR2. Both IFNAR1 and&lt;br /&gt;
IFNAR2 are constitutively expressed on the surface of virtually all cells. IFNβcan bind to IFNAR2 alone, but can bind to IFNAR1 only in&lt;br /&gt;
the presence of IFNAR2. The strength of IFNβbinding to its&lt;br /&gt;
receptor is much higher when both subunits are present.&lt;br /&gt;
Knockout experiments indicate that both IFNAR1 and IFNAR2 are&lt;br /&gt;
required for IFNβ activity, but it remains uncertain&lt;br /&gt;
whether there are auxiliary receptors or alternative receptor/&lt;br /&gt;
signaling complexes in some cell types.&lt;br /&gt;
The current view of events leading to IFNβbiological activity is&lt;br /&gt;
as follows (Fig. 1A): 1) IFN binds to the extracellular domain of&lt;br /&gt;
IFNAR2. 2) IFNAR1 then engages with the IFNβ–IFNAR2 complex,&lt;br /&gt;
forming the high-affinity receptor–ligand complex and allowing&lt;br /&gt;
the intracellular domains of the two receptor chains and&lt;br /&gt;
associated proteins to interact. 3) This interaction, which includes&lt;br /&gt;
JAK1 (associated with IFNAR2) and Tyk2 (associated with IFNAR1),&lt;br /&gt;
results in a cascade of phosphorylation events that leads to&lt;br /&gt;
activation of STATS. 4) Activated STATS form a complex with other&lt;br /&gt;
cytoplasmic proteins, which then translocate into the nucleus to&lt;br /&gt;
bind to Interferon Sensitive Response Elements (ISRE), transcriptional control regions which are upstream of many IFN regulated&lt;br /&gt;
genes. 5) This ISRE binding results in transcriptional regulation&lt;br /&gt;
(both induction and inhibition) of &amp;gt;1000 genes.&lt;br /&gt;
Thus, IFN regulates expression of a myriad of genes. While the&lt;br /&gt;
function of some of these genes is clear (e.g. the antiviral product&lt;br /&gt;
MxA), the specific transcripts mediating therapeutic benefit of&lt;br /&gt;
IFNβin MS are unknown. This is, in part, due to the complexity and&lt;br /&gt;
heterogeneity of MS, but also because IFNβis an agonist that can&lt;br /&gt;
induce the expression not only of ISRE regulated genes, but&lt;br /&gt;
through newly expressed transcription factors, can induce or&lt;br /&gt;
inhibit subsequent waves of gene expression. In addition, some&lt;br /&gt;
IFNβregulated proteins, which include cytokines and chemokines,&lt;br /&gt;
can alter the level or function of particular cell populations. The&lt;br /&gt;
resulting multifaceted biological response is in contrast to&lt;br /&gt;
therapies such as monoclonal antibodies that have a much more&lt;br /&gt;
specific molecular target. Thus, as shown inFig. 1B, IFNβmay exert&lt;br /&gt;
its therapeutic effects in two distinct ways: 1) direct effects of IFNβ&lt;br /&gt;
regulated gene products; or 2) indirect effects of IFN-regulated gene products, via effects on other genes (e.g. transcription&lt;br /&gt;
factors), or by altering populations or functions of cells including&lt;br /&gt;
Type 2 dendritic cells, monocytes, regulatory T-cells and CD56&lt;br /&gt;
bright NK cells.&lt;br /&gt;
[[Image:Mechanism of action of IFN.jpg]]&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;Reference&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
[1]R. Arduini, K. Strauch, L. Rukel etal.Characterization of a soluble ternary complex formed&lt;br /&gt;
between human interferon-b-1a and its receptor chains&#039;&#039;Protein Science&#039;&#039; (1999),&#039;&#039;8&#039;&#039;:1867–1877&lt;br /&gt;
[2] T. Taniguchi, A. Takaoka, The interferon-alpha/beta system in&lt;br /&gt;
antiviral responses: a multimodal machinery of gene regulation&lt;br /&gt;
by the IRF family of transcription factors, Curr. Opin. Immunol.&lt;br /&gt;
14 (1) (Feb 2002) 111–116.&lt;br /&gt;
[3] K. Kasama, J. Utsumi, E. Matsuo-Ogawa, T. Nagahata, Y. Kagawa,&lt;br /&gt;
S. Yamazaki, et al., Pharmacokinetics and biologic activities of&lt;br /&gt;
human native and asialointerferon-beta s, J. Interferon Cytokine&lt;br /&gt;
Res. 15 (5) (May 1995) 407–415.&lt;br /&gt;
[4] L. Runkel, W. Meier, R.B. Pepinsky, M. Karpusas, A. Whitty,&lt;br /&gt;
K. Kimball, et al., Structural and functional differences between&lt;br /&gt;
glycosylated and non-glycosylated forms of human&lt;br /&gt;
interferon-beta (IFN-beta), Pharm. Res. 15 (4) (Apr 1998)&lt;br /&gt;
641–649.&lt;br /&gt;
[5] R.M. Arduini, K.L. Strauch, L.A. Runkel, M.M. Carlson, X.&lt;br /&gt;
Hronowski, S.F. Foley, et al., Characterization of a soluble&lt;br /&gt;
ternary complex formed between human interferon-beta-1a&lt;br /&gt;
and its receptor chains, Protein Sci. 8 (9) (Sep 1999)&lt;br /&gt;
1867–1877.&lt;br /&gt;
[6] G. Uze, G. Schreiber, J. Piehler, S. Pellegrini, The receptor of the&lt;br /&gt;
type I interferon family, Curr. Top. Microbiol. Immunol. 316&lt;br /&gt;
(2007) 71–95.&lt;br /&gt;
[7] C.M. Cleary, R.J. Donnelly, J. Soh, T.M. Mariano, S. Pestka,&lt;br /&gt;
Knockout and reconstitution of a functional human type I&lt;br /&gt;
interferon receptor complex, J. Biol. Chem. 269 (29)&lt;br /&gt;
(Jul 22 1994) 18747–18749.&lt;br /&gt;
[8] J. Kumaran, O.R. Colamonici, E.N. Fish, Structure–function study&lt;br /&gt;
of the extracellular domain of the human type I interferon&lt;br /&gt;
receptor (IFNAR)-1 subunit, J. Interferon Cytokine Res. 20 (5)&lt;br /&gt;
(May 2000) 479–485.&lt;br /&gt;
[9] J. Ghislain, G. Sussman, S. Goelz, L.E. Ling, E.N. Fish, Configuration&lt;br /&gt;
of the interferon-alpha/beta receptor complex determines the&lt;br /&gt;
context of the biological response, J. Biol. Chem. 270 (37)&lt;br /&gt;
(Sep 15 1995) 21785–21792.&lt;/div&gt;</summary>
		<author><name>Chengfeng Ren</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Chengfeng_Ren/Sandbox1&amp;diff=1873133</id>
		<title>Chengfeng Ren/Sandbox1</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Chengfeng_Ren/Sandbox1&amp;diff=1873133"/>
		<updated>2013-12-06T17:26:01Z</updated>

		<summary type="html">&lt;p&gt;Chengfeng Ren: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;==&#039;&#039;&#039;IFN Categories and IFNβ-1a sources&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
Interferons (IFNs) are a family of helical cytokines that mediate&lt;br /&gt;
antiviral, antiproliferative, and immune modulatory activities in&lt;br /&gt;
response to biological and chemical stimuli. Two types of IFN are recognized on   &lt;br /&gt;
the basis of their physical and biological properties; type I, which   &lt;br /&gt;
contains the monomeric IFNs-α,-β,-τ, and -ω, and type II, the&lt;br /&gt;
only member of which is the dimeric IFN-γ. Representatives of all&lt;br /&gt;
type I and type II IFNs are found in humans, except for IFN-τ,&lt;br /&gt;
which is found only in ruminant ungulates. There are 12 different human IFNs-α;each one&lt;br /&gt;
comprising a different subtype,although 14 different genes have&lt;br /&gt;
been identified, whereas human IFN-β, IFN-ω, and IFN-γare&lt;br /&gt;
encoded by single genes[1].&lt;br /&gt;
&lt;br /&gt;
Interferon-βhas two subtyes, interferon-β-1a and interferon-β-1b. Interferon-β-1a is naturally expressed in numerous cell types in human, including &lt;br /&gt;
fibroblasts, endothelial cells, epithelial cells and various leukocytes, however,Interferon-β-1b is produced in modified E. coli.&lt;br /&gt;
&lt;br /&gt;
Here is a jpg clearly illustrating IFNs categories.&lt;br /&gt;
[[Image:IFN categories.jpg]]&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;Structure info. of IFNβ-1a&#039;&#039;&#039;==&lt;br /&gt;
IFNβ-1a consisting of 166 amino acids, around 20KDa. It has 5 helixs.&lt;br /&gt;
&amp;lt;Structure load=&#039;1au1&#039; size=&#039;500&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;IFN structure from PDB&#039; scene=&#039;IFN scene_structure&#039; /&amp;gt;&lt;br /&gt;
&amp;lt;scene name=&#039;56/566498/Ifn_beta_1a_scene_structure/1&#039;&amp;gt;IFN beta 1a structure&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;IFNβ-1a biological activity and therapeutic effects&#039;&#039;&#039;==&lt;br /&gt;
&lt;br /&gt;
IFNβ-1a as well as other family of IFNs has a variety of biological activities, inluding antiviral, antiproliferative, and immune modulatory activities in response to biological and chemical stimuli. &lt;br /&gt;
&lt;br /&gt;
IFNβ-1a is mainly used to treat relapsing forms of multiple sclerosis(MS).&lt;br /&gt;
MS is a life-long disease that affects your nervous system &lt;br /&gt;
by destroying the protective covering (myelin) that surrounds&lt;br /&gt;
your nerve fibers.&lt;br /&gt;
The commercial available drug format is [http://http://www.avonex.com/ Avonex].(Please refer to the drug guide before using it)&lt;br /&gt;
&lt;br /&gt;
==&#039;&#039;&#039;Mechanism of action for IFNβ-1a&#039;&#039;&#039;==&lt;br /&gt;
IFNβis encoded by a single gene&lt;br /&gt;
with no introns (and hence, no splice variants), and no reported&lt;br /&gt;
polymorphisms. Although IFNβwas originally called fibroblast&lt;br /&gt;
IFN–because fibroblasts could be induced to produce it in vitro–&lt;br /&gt;
numerous other cell types can express IFNβ, including endothelial&lt;br /&gt;
cells, epithelial cells and various leukocytes. Unlike IFNα,&lt;br /&gt;
where a particular subset of dendritic cells appears to be one of the&lt;br /&gt;
primary in vivo sources, a physiological source of IFNβhas not&lt;br /&gt;
been identified. Endogenous IFNβis not generally detected at&lt;br /&gt;
significant levels in humans. So called “natural” human IFNβ&lt;br /&gt;
(expressed by fibroblasts in vitro), is glycosylated at one site with&lt;br /&gt;
an N-linked complex carbohydrate, the exact structure of which&lt;br /&gt;
can be influenced by growth conditions and the cell type&lt;br /&gt;
producing the IFN. While important for monomer stability,&lt;br /&gt;
solubility and, perhaps biodistribution, the carbohydrate moiety&lt;br /&gt;
does not appear to be required for receptor binding.&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The IFNβreceptor, signaling cascade and gene regulation&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
The IFNβreceptor is composed of 2 required chains—a signaling&lt;br /&gt;
chain, IFNAR1, and a binding chain, IFNAR2. Both IFNAR1 and&lt;br /&gt;
IFNAR2 are constitutively expressed on the surface of virtually all cells. IFNβcan bind to IFNAR2 alone, but can bind to IFNAR1 only in&lt;br /&gt;
the presence of IFNAR2. The strength of IFNβbinding to its&lt;br /&gt;
receptor is much higher when both subunits are present.&lt;br /&gt;
Knockout experiments indicate that both IFNAR1 and IFNAR2 are&lt;br /&gt;
required for IFNβ activity, but it remains uncertain&lt;br /&gt;
whether there are auxiliary receptors or alternative receptor/&lt;br /&gt;
signaling complexes in some cell types.&lt;br /&gt;
The current view of events leading to IFNβbiological activity is&lt;br /&gt;
as follows (Fig. 1A): 1) IFN binds to the extracellular domain of&lt;br /&gt;
IFNAR2. 2) IFNAR1 then engages with the IFNβ–IFNAR2 complex,&lt;br /&gt;
forming the high-affinity receptor–ligand complex and allowing&lt;br /&gt;
the intracellular domains of the two receptor chains and&lt;br /&gt;
associated proteins to interact. 3) This interaction, which includes&lt;br /&gt;
JAK1 (associated with IFNAR2) and Tyk2 (associated with IFNAR1),&lt;br /&gt;
results in a cascade of phosphorylation events that leads to&lt;br /&gt;
activation of STATS. 4) Activated STATS form a complex with other&lt;br /&gt;
cytoplasmic proteins, which then translocate into the nucleus to&lt;br /&gt;
bind to Interferon Sensitive Response Elements (ISRE), transcriptional control regions which are upstream of many IFN regulated&lt;br /&gt;
genes. 5) This ISRE binding results in transcriptional regulation&lt;br /&gt;
(both induction and inhibition) of &amp;gt;1000 genes.&lt;br /&gt;
Thus, IFN regulates expression of a myriad of genes. While the&lt;br /&gt;
function of some of these genes is clear (e.g. the antiviral product&lt;br /&gt;
MxA), the specific transcripts mediating therapeutic benefit of&lt;br /&gt;
IFNβin MS are unknown. This is, in part, due to the complexity and&lt;br /&gt;
heterogeneity of MS, but also because IFNβis an agonist that can&lt;br /&gt;
induce the expression not only of ISRE regulated genes, but&lt;br /&gt;
through newly expressed transcription factors, can induce or&lt;br /&gt;
inhibit subsequent waves of gene expression. In addition, some&lt;br /&gt;
IFNβregulated proteins, which include cytokines and chemokines,&lt;br /&gt;
can alter the level or function of particular cell populations. The&lt;br /&gt;
resulting multifaceted biological response is in contrast to&lt;br /&gt;
therapies such as monoclonal antibodies that have a much more&lt;br /&gt;
specific molecular target. Thus, as shown inFig. 1B, IFNβmay exert&lt;br /&gt;
its therapeutic effects in two distinct ways: 1) direct effects of IFNβ&lt;br /&gt;
regulated gene products; or 2) indirect effects of IFN-regulated gene products, via effects on other genes (e.g. transcription&lt;br /&gt;
factors), or by altering populations or functions of cells including&lt;br /&gt;
Type 2 dendritic cells, monocytes, regulatory T-cells and CD56&lt;br /&gt;
bright NK cells.&lt;br /&gt;
[[Image:Mechanism of action of IFN.jpg]]&lt;br /&gt;
&lt;br /&gt;
==Reference==&lt;br /&gt;
&lt;br /&gt;
[1]&#039;&#039;Protein Science&#039;&#039; (1999),&#039;&#039;8&#039;&#039;:1867–1877&lt;/div&gt;</summary>
		<author><name>Chengfeng Ren</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Chengfeng_Ren/Sandbox1&amp;diff=1873126</id>
		<title>Chengfeng Ren/Sandbox1</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Chengfeng_Ren/Sandbox1&amp;diff=1873126"/>
		<updated>2013-12-06T17:23:53Z</updated>

		<summary type="html">&lt;p&gt;Chengfeng Ren: /* Mechanism of action for IFNβ-1a */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;==IFN Categories and IFNβ-1a sources==&lt;br /&gt;
&lt;br /&gt;
Interferons (IFNs) are a family of helical cytokines that mediate&lt;br /&gt;
antiviral, antiproliferative, and immune modulatory activities in&lt;br /&gt;
response to biological and chemical stimuli. Two types of IFN are recognized on   &lt;br /&gt;
the basis of their physical and biological properties; type I, which   &lt;br /&gt;
contains the monomeric IFNs-α,-β,-τ, and -ω, and type II, the&lt;br /&gt;
only member of which is the dimeric IFN-γ. Representatives of all&lt;br /&gt;
type I and type II IFNs are found in humans, except for IFN-τ,&lt;br /&gt;
which is found only in ruminant ungulates. There are 12 different human IFNs-α;each one&lt;br /&gt;
comprising a different subtype,although 14 different genes have&lt;br /&gt;
been identified, whereas human IFN-β, IFN-ω, and IFN-γare&lt;br /&gt;
encoded by single genes[1].&lt;br /&gt;
&lt;br /&gt;
Interferon-βhas two subtyes, interferon-β-1a and interferon-β-1b. Interferon-β-1a is naturally expressed in numerous cell types in human, including &lt;br /&gt;
fibroblasts, endothelial cells, epithelial cells and various leukocytes, however,Interferon-β-1b is produced in modified E. coli.&lt;br /&gt;
&lt;br /&gt;
Here is a jpg clearly illustrating IFNs categories.&lt;br /&gt;
[[Image:IFN categories.jpg]]&lt;br /&gt;
&lt;br /&gt;
==Structure info. of IFNβ-1a==&lt;br /&gt;
IFNβ-1a consisting of 166 amino acids, around 20KDa. It has 5 helixs.&lt;br /&gt;
&amp;lt;Structure load=&#039;1au1&#039; size=&#039;500&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;IFN structure from PDB&#039; scene=&#039;IFN scene_structure&#039; /&amp;gt;&lt;br /&gt;
&amp;lt;scene name=&#039;56/566498/Ifn_beta_1a_scene_structure/1&#039;&amp;gt;IFN beta 1a structure&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==IFNβ-1a biological activity and therapeutic effects==&lt;br /&gt;
&lt;br /&gt;
IFNβ-1a as well as other family of IFNs has a variety of biological activities, inluding antiviral, antiproliferative, and immune modulatory activities in response to biological and chemical stimuli. &lt;br /&gt;
&lt;br /&gt;
IFNβ-1a is mainly used to treat relapsing forms of multiple sclerosis(MS).&lt;br /&gt;
MS is a life-long disease that affects your nervous system &lt;br /&gt;
by destroying the protective covering (myelin) that surrounds&lt;br /&gt;
your nerve fibers.&lt;br /&gt;
The commercial available drug format is [http://http://www.avonex.com/ Avonex].(Please refer to the drug guide before using it)&lt;br /&gt;
&lt;br /&gt;
==Mechanism of action for IFNβ-1a==&lt;br /&gt;
IFNβis encoded by a single gene&lt;br /&gt;
with no introns (and hence, no splice variants), and no reported&lt;br /&gt;
polymorphisms. Although IFNβwas originally called fibroblast&lt;br /&gt;
IFN–because fibroblasts could be induced to produce it in vitro–&lt;br /&gt;
numerous other cell types can express IFNβ, including endothelial&lt;br /&gt;
cells, epithelial cells and various leukocytes. Unlike IFNα,&lt;br /&gt;
where a particular subset of dendritic cells appears to be one of the&lt;br /&gt;
primary in vivo sources, a physiological source of IFNβhas not&lt;br /&gt;
been identified. Endogenous IFNβis not generally detected at&lt;br /&gt;
significant levels in humans. So called “natural” human IFNβ&lt;br /&gt;
(expressed by fibroblasts in vitro), is glycosylated at one site with&lt;br /&gt;
an N-linked complex carbohydrate, the exact structure of which&lt;br /&gt;
can be influenced by growth conditions and the cell type&lt;br /&gt;
producing the IFN. While important for monomer stability,&lt;br /&gt;
solubility and, perhaps biodistribution, the carbohydrate moiety&lt;br /&gt;
does not appear to be required for receptor binding.&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The IFNβreceptor, signaling cascade and gene regulation&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
The IFNβreceptor is composed of 2 required chains—a signaling&lt;br /&gt;
chain, IFNAR1, and a binding chain, IFNAR2. Both IFNAR1 and&lt;br /&gt;
IFNAR2 are constitutively expressed on the surface of virtually all cells. IFNβcan bind to IFNAR2 alone, but can bind to IFNAR1 only in&lt;br /&gt;
the presence of IFNAR2. The strength of IFNβbinding to its&lt;br /&gt;
receptor is much higher when both subunits are present.&lt;br /&gt;
Knockout experiments indicate that both IFNAR1 and IFNAR2 are&lt;br /&gt;
required for IFNβ activity, but it remains uncertain&lt;br /&gt;
whether there are auxiliary receptors or alternative receptor/&lt;br /&gt;
signaling complexes in some cell types.&lt;br /&gt;
The current view of events leading to IFNβbiological activity is&lt;br /&gt;
as follows (Fig. 1A): 1) IFN binds to the extracellular domain of&lt;br /&gt;
IFNAR2. 2) IFNAR1 then engages with the IFNβ–IFNAR2 complex,&lt;br /&gt;
forming the high-affinity receptor–ligand complex and allowing&lt;br /&gt;
the intracellular domains of the two receptor chains and&lt;br /&gt;
associated proteins to interact. 3) This interaction, which includes&lt;br /&gt;
JAK1 (associated with IFNAR2) and Tyk2 (associated with IFNAR1),&lt;br /&gt;
results in a cascade of phosphorylation events that leads to&lt;br /&gt;
activation of STATS. 4) Activated STATS form a complex with other&lt;br /&gt;
cytoplasmic proteins, which then translocate into the nucleus to&lt;br /&gt;
bind to Interferon Sensitive Response Elements (ISRE), transcriptional control regions which are upstream of many IFN regulated&lt;br /&gt;
genes. 5) This ISRE binding results in transcriptional regulation&lt;br /&gt;
(both induction and inhibition) of &amp;gt;1000 genes.&lt;br /&gt;
Thus, IFN regulates expression of a myriad of genes. While the&lt;br /&gt;
function of some of these genes is clear (e.g. the antiviral product&lt;br /&gt;
MxA), the specific transcripts mediating therapeutic benefit of&lt;br /&gt;
IFNβin MS are unknown. This is, in part, due to the complexity and&lt;br /&gt;
heterogeneity of MS, but also because IFNβis an agonist that can&lt;br /&gt;
induce the expression not only of ISRE regulated genes, but&lt;br /&gt;
through newly expressed transcription factors, can induce or&lt;br /&gt;
inhibit subsequent waves of gene expression. In addition, some&lt;br /&gt;
IFNβregulated proteins, which include cytokines and chemokines,&lt;br /&gt;
can alter the level or function of particular cell populations. The&lt;br /&gt;
resulting multifaceted biological response is in contrast to&lt;br /&gt;
therapies such as monoclonal antibodies that have a much more&lt;br /&gt;
specific molecular target. Thus, as shown inFig. 1B, IFNβmay exert&lt;br /&gt;
its therapeutic effects in two distinct ways: 1) direct effects of IFNβ&lt;br /&gt;
regulated gene products; or 2) indirect effects of IFN-regulated gene products, via effects on other genes (e.g. transcription&lt;br /&gt;
factors), or by altering populations or functions of cells including&lt;br /&gt;
Type 2 dendritic cells, monocytes, regulatory T-cells and CD56&lt;br /&gt;
bright NK cells.&lt;br /&gt;
[[Image:Mechanism of action of IFN.jpg]]&lt;br /&gt;
&lt;br /&gt;
==Reference==&lt;br /&gt;
&lt;br /&gt;
[1]&#039;&#039;Protein Science&#039;&#039; (1999),&#039;&#039;8&#039;&#039;:1867–1877&lt;/div&gt;</summary>
		<author><name>Chengfeng Ren</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Chengfeng_Ren/Sandbox1&amp;diff=1873123</id>
		<title>Chengfeng Ren/Sandbox1</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Chengfeng_Ren/Sandbox1&amp;diff=1873123"/>
		<updated>2013-12-06T17:20:23Z</updated>

		<summary type="html">&lt;p&gt;Chengfeng Ren: /* Mechanism of action for IFNβ-1a */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;==IFN Categories and IFNβ-1a sources==&lt;br /&gt;
&lt;br /&gt;
Interferons (IFNs) are a family of helical cytokines that mediate&lt;br /&gt;
antiviral, antiproliferative, and immune modulatory activities in&lt;br /&gt;
response to biological and chemical stimuli. Two types of IFN are recognized on   &lt;br /&gt;
the basis of their physical and biological properties; type I, which   &lt;br /&gt;
contains the monomeric IFNs-α,-β,-τ, and -ω, and type II, the&lt;br /&gt;
only member of which is the dimeric IFN-γ. Representatives of all&lt;br /&gt;
type I and type II IFNs are found in humans, except for IFN-τ,&lt;br /&gt;
which is found only in ruminant ungulates. There are 12 different human IFNs-α;each one&lt;br /&gt;
comprising a different subtype,although 14 different genes have&lt;br /&gt;
been identified, whereas human IFN-β, IFN-ω, and IFN-γare&lt;br /&gt;
encoded by single genes[1].&lt;br /&gt;
&lt;br /&gt;
Interferon-βhas two subtyes, interferon-β-1a and interferon-β-1b. Interferon-β-1a is naturally expressed in numerous cell types in human, including &lt;br /&gt;
fibroblasts, endothelial cells, epithelial cells and various leukocytes, however,Interferon-β-1b is produced in modified E. coli.&lt;br /&gt;
&lt;br /&gt;
Here is a jpg clearly illustrating IFNs categories.&lt;br /&gt;
[[Image:IFN categories.jpg]]&lt;br /&gt;
&lt;br /&gt;
==Structure info. of IFNβ-1a==&lt;br /&gt;
IFNβ-1a consisting of 166 amino acids, around 20KDa. It has 5 helixs.&lt;br /&gt;
&amp;lt;Structure load=&#039;1au1&#039; size=&#039;500&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;IFN structure from PDB&#039; scene=&#039;IFN scene_structure&#039; /&amp;gt;&lt;br /&gt;
&amp;lt;scene name=&#039;56/566498/Ifn_beta_1a_scene_structure/1&#039;&amp;gt;IFN beta 1a structure&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==IFNβ-1a biological activity and therapeutic effects==&lt;br /&gt;
&lt;br /&gt;
IFNβ-1a as well as other family of IFNs has a variety of biological activities, inluding antiviral, antiproliferative, and immune modulatory activities in response to biological and chemical stimuli. &lt;br /&gt;
&lt;br /&gt;
IFNβ-1a is mainly used to treat relapsing forms of multiple sclerosis(MS).&lt;br /&gt;
MS is a life-long disease that affects your nervous system &lt;br /&gt;
by destroying the protective covering (myelin) that surrounds&lt;br /&gt;
your nerve fibers.&lt;br /&gt;
The commercial available drug format is [http://http://www.avonex.com/ Avonex].(Please refer to the drug guide before using it)&lt;br /&gt;
&lt;br /&gt;
==Mechanism of action for IFNβ-1a==&lt;br /&gt;
IFNβis encoded by a single gene&lt;br /&gt;
with no introns (and hence, no splice variants), and no reported&lt;br /&gt;
polymorphisms. Although IFNβwas originally called fibroblast&lt;br /&gt;
IFN–because fibroblasts could be induced to produce it in vitro–&lt;br /&gt;
numerous other cell types can express IFNβ, including endothelial&lt;br /&gt;
cells, epithelial cells and various leukocytes. Unlike IFNα,&lt;br /&gt;
where a particular subset of dendritic cells appears to be one of the&lt;br /&gt;
primary in vivo sources, a physiological source of IFNβhas not&lt;br /&gt;
been identified. Endogenous IFNβis not generally detected at&lt;br /&gt;
significant levels in humans. So called “natural” human IFNβ&lt;br /&gt;
(expressed by fibroblasts in vitro), is glycosylated at one site with&lt;br /&gt;
an N-linked complex carbohydrate, the exact structure of which&lt;br /&gt;
can be influenced by growth conditions and the cell type&lt;br /&gt;
producing the IFN. While important for monomer stability,&lt;br /&gt;
solubility and, perhaps biodistribution, the carbohydrate moiety&lt;br /&gt;
does not appear to be required for receptor binding.&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;The IFNβreceptor, signaling cascade and gene regulation&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
The IFNβreceptor is composed of 2 required chains—a signaling&lt;br /&gt;
chain, IFNAR1, and a binding chain, IFNAR2. Both IFNAR1 and&lt;br /&gt;
IFNAR2 are constitutively expressed on the surface of virtually all cells. IFNβcan bind to IFNAR2 alone, but can bind to IFNAR1 only in&lt;br /&gt;
the presence of IFNAR2. The strength of IFNβbinding to its&lt;br /&gt;
receptor is much higher when both subunits are present.&lt;br /&gt;
Knockout experiments indicate that both IFNAR1 and IFNAR2 are&lt;br /&gt;
required for IFNβ activity, but it remains uncertain&lt;br /&gt;
whether there are auxiliary receptors or alternative receptor/&lt;br /&gt;
signaling complexes in some cell types.&lt;br /&gt;
The current view of events leading to IFNβbiological activity is&lt;br /&gt;
as follows (Fig. 1A): 1) IFN binds to the extracellular domain of&lt;br /&gt;
IFNAR2. 2) IFNAR1 then engages with the IFNβ–IFNAR2 complex,&lt;br /&gt;
forming the high-affinity receptor–ligand complex and allowing&lt;br /&gt;
the intracellular domains of the two receptor chains and&lt;br /&gt;
associated proteins to interact. 3) This interaction, which includes&lt;br /&gt;
JAK1 (associated with IFNAR2) and Tyk2 (associated with IFNAR1),&lt;br /&gt;
results in a cascade of phosphorylation events that leads to&lt;br /&gt;
activation of STATS. 4) Activated STATS form a complex with other&lt;br /&gt;
cytoplasmic proteins, which then translocate into the nucleus to&lt;br /&gt;
bind to Interferon Sensitive Response Elements (ISRE), transcriptional control regions which are upstream of many IFN regulated&lt;br /&gt;
genes. 5) This ISRE binding results in transcriptional regulation&lt;br /&gt;
(both induction and inhibition) of &amp;gt;1000 genes.&lt;br /&gt;
Thus, IFN regulates expression of a myriad of genes. While the&lt;br /&gt;
function of some of these genes is clear (e.g. the antiviral product&lt;br /&gt;
MxA), the specific transcripts mediating therapeutic benefit of&lt;br /&gt;
IFNβin MS are unknown. This is, in part, due to the complexity and&lt;br /&gt;
heterogeneity of MS, but also because IFNβis an agonist that can&lt;br /&gt;
induce the expression not only of ISRE regulated genes, but&lt;br /&gt;
through newly expressed transcription factors, can induce or&lt;br /&gt;
inhibit subsequent waves of gene expression. In addition, some&lt;br /&gt;
IFNβregulated proteins, which include cytokines and chemokines,&lt;br /&gt;
can alter the level or function of particular cell populations. The&lt;br /&gt;
resulting multifaceted biological response is in contrast to&lt;br /&gt;
therapies such as monoclonal antibodies that have a much more&lt;br /&gt;
specific molecular target. Thus, as shown inFig. 1B, IFNβmay exert&lt;br /&gt;
its therapeutic effects in two distinct ways: 1) direct effects of IFNβ&lt;br /&gt;
regulated gene products; or 2) indirect effects of IFN-regulated gene products, via effects on other genes (e.g. transcription&lt;br /&gt;
factors), or by altering populations or functions of cells including&lt;br /&gt;
Type 2 dendritic cells, monocytes, regulatory T-cells and CD56&lt;br /&gt;
bright NK cells&lt;br /&gt;
&lt;br /&gt;
==Reference==&lt;br /&gt;
&lt;br /&gt;
[1]&#039;&#039;Protein Science&#039;&#039; (1999),&#039;&#039;8&#039;&#039;:1867–1877&lt;/div&gt;</summary>
		<author><name>Chengfeng Ren</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Chengfeng_Ren/Sandbox1&amp;diff=1873122</id>
		<title>Chengfeng Ren/Sandbox1</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Chengfeng_Ren/Sandbox1&amp;diff=1873122"/>
		<updated>2013-12-06T17:19:38Z</updated>

		<summary type="html">&lt;p&gt;Chengfeng Ren: /* Mechanism of action for IFNβ-1a */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;==IFN Categories and IFNβ-1a sources==&lt;br /&gt;
&lt;br /&gt;
Interferons (IFNs) are a family of helical cytokines that mediate&lt;br /&gt;
antiviral, antiproliferative, and immune modulatory activities in&lt;br /&gt;
response to biological and chemical stimuli. Two types of IFN are recognized on   &lt;br /&gt;
the basis of their physical and biological properties; type I, which   &lt;br /&gt;
contains the monomeric IFNs-α,-β,-τ, and -ω, and type II, the&lt;br /&gt;
only member of which is the dimeric IFN-γ. Representatives of all&lt;br /&gt;
type I and type II IFNs are found in humans, except for IFN-τ,&lt;br /&gt;
which is found only in ruminant ungulates. There are 12 different human IFNs-α;each one&lt;br /&gt;
comprising a different subtype,although 14 different genes have&lt;br /&gt;
been identified, whereas human IFN-β, IFN-ω, and IFN-γare&lt;br /&gt;
encoded by single genes[1].&lt;br /&gt;
&lt;br /&gt;
Interferon-βhas two subtyes, interferon-β-1a and interferon-β-1b. Interferon-β-1a is naturally expressed in numerous cell types in human, including &lt;br /&gt;
fibroblasts, endothelial cells, epithelial cells and various leukocytes, however,Interferon-β-1b is produced in modified E. coli.&lt;br /&gt;
&lt;br /&gt;
Here is a jpg clearly illustrating IFNs categories.&lt;br /&gt;
[[Image:IFN categories.jpg]]&lt;br /&gt;
&lt;br /&gt;
==Structure info. of IFNβ-1a==&lt;br /&gt;
IFNβ-1a consisting of 166 amino acids, around 20KDa. It has 5 helixs.&lt;br /&gt;
&amp;lt;Structure load=&#039;1au1&#039; size=&#039;500&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;IFN structure from PDB&#039; scene=&#039;IFN scene_structure&#039; /&amp;gt;&lt;br /&gt;
&amp;lt;scene name=&#039;56/566498/Ifn_beta_1a_scene_structure/1&#039;&amp;gt;IFN beta 1a structure&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==IFNβ-1a biological activity and therapeutic effects==&lt;br /&gt;
&lt;br /&gt;
IFNβ-1a as well as other family of IFNs has a variety of biological activities, inluding antiviral, antiproliferative, and immune modulatory activities in response to biological and chemical stimuli. &lt;br /&gt;
&lt;br /&gt;
IFNβ-1a is mainly used to treat relapsing forms of multiple sclerosis(MS).&lt;br /&gt;
MS is a life-long disease that affects your nervous system &lt;br /&gt;
by destroying the protective covering (myelin) that surrounds&lt;br /&gt;
your nerve fibers.&lt;br /&gt;
The commercial available drug format is [http://http://www.avonex.com/ Avonex].(Please refer to the drug guide before using it)&lt;br /&gt;
&lt;br /&gt;
==Mechanism of action for IFNβ-1a==&lt;br /&gt;
IFNβis encoded by a single gene&lt;br /&gt;
with no introns (and hence, no splice variants), and no reported&lt;br /&gt;
polymorphisms. Although IFNβwas originally called fibroblast&lt;br /&gt;
IFN–because fibroblasts could be induced to produce it in vitro–&lt;br /&gt;
numerous other cell types can express IFNβ, including endothelial&lt;br /&gt;
cells, epithelial cells and various leukocytes. Unlike IFNα,&lt;br /&gt;
where a particular subset of dendritic cells appears to be one of the&lt;br /&gt;
primary in vivo sources, a physiological source of IFNβhas not&lt;br /&gt;
been identified. Endogenous IFNβis not generally detected at&lt;br /&gt;
significant levels in humans. So called “natural” human IFNβ&lt;br /&gt;
(expressed by fibroblasts in vitro), is glycosylated at one site with&lt;br /&gt;
an N-linked complex carbohydrate, the exact structure of which&lt;br /&gt;
can be influenced by growth conditions and the cell type&lt;br /&gt;
producing the IFN. While important for monomer stability,&lt;br /&gt;
solubility and, perhaps biodistribution, the carbohydrate moiety&lt;br /&gt;
does not appear to be required for receptor binding.&lt;br /&gt;
&#039;&#039;&#039;The IFNβreceptor, signaling cascade and gene regulation&#039;&#039;&#039;&lt;br /&gt;
The IFNβreceptor is composed of 2 required chains—a signaling&lt;br /&gt;
chain, IFNAR1, and a binding chain, IFNAR2. Both IFNAR1 and&lt;br /&gt;
IFNAR2 are constitutively expressed on the surface of virtually all cells. IFNβcan bind to IFNAR2 alone, but can bind to IFNAR1 only in&lt;br /&gt;
the presence of IFNAR2. The strength of IFNβbinding to its&lt;br /&gt;
receptor is much higher when both subunits are present.&lt;br /&gt;
Knockout experiments indicate that both IFNAR1 and IFNAR2 are&lt;br /&gt;
required for IFNβ activity, but it remains uncertain&lt;br /&gt;
whether there are auxiliary receptors or alternative receptor/&lt;br /&gt;
signaling complexes in some cell types.&lt;br /&gt;
The current view of events leading to IFNβbiological activity is&lt;br /&gt;
as follows (Fig. 1A): 1) IFN binds to the extracellular domain of&lt;br /&gt;
IFNAR2. 2) IFNAR1 then engages with the IFNβ–IFNAR2 complex,&lt;br /&gt;
forming the high-affinity receptor–ligand complex and allowing&lt;br /&gt;
the intracellular domains of the two receptor chains and&lt;br /&gt;
associated proteins to interact. 3) This interaction, which includes&lt;br /&gt;
JAK1 (associated with IFNAR2) and Tyk2 (associated with IFNAR1),&lt;br /&gt;
results in a cascade of phosphorylation events that leads to&lt;br /&gt;
activation of STATS. 4) Activated STATS form a complex with other&lt;br /&gt;
cytoplasmic proteins, which then translocate into the nucleus to&lt;br /&gt;
bind to Interferon Sensitive Response Elements (ISRE), transcriptional control regions which are upstream of many IFN regulated&lt;br /&gt;
genes. 5) This ISRE binding results in transcriptional regulation&lt;br /&gt;
(both induction and inhibition) of &amp;gt;1000 genes[32,33].&lt;br /&gt;
Thus, IFN regulates expression of a myriad of genes. While the&lt;br /&gt;
function of some of these genes is clear (e.g. the antiviral product&lt;br /&gt;
MxA), the specific transcripts mediating therapeutic benefit of&lt;br /&gt;
IFNβin MS are unknown. This is, in part, due to the complexity and&lt;br /&gt;
heterogeneity of MS, but also because IFNβis an agonist that can&lt;br /&gt;
induce the expression not only of ISRE regulated genes, but&lt;br /&gt;
through newly expressed transcription factors, can induce or&lt;br /&gt;
inhibit subsequent waves of gene expression. In addition, some&lt;br /&gt;
IFNβregulated proteins, which include cytokines and chemokines,&lt;br /&gt;
can alter the level or function of particular cell populations. The&lt;br /&gt;
resulting multifaceted biological response is in contrast to&lt;br /&gt;
therapies such as monoclonal antibodies that have a much more&lt;br /&gt;
specific molecular target. Thus, as shown inFig. 1B, IFNβmay exert&lt;br /&gt;
its therapeutic effects in two distinct ways: 1) direct effects of IFNβ&lt;br /&gt;
regulated gene products; or 2) indirect effects of IFN-regulated gene products, via effects on other genes (e.g. transcription&lt;br /&gt;
factors), or by altering populations or functions of cells including&lt;br /&gt;
Type 2 dendritic cells, monocytes, regulatory T-cells and CD56&lt;br /&gt;
bright NK cells&lt;br /&gt;
&lt;br /&gt;
==Reference==&lt;br /&gt;
&lt;br /&gt;
[1]&#039;&#039;Protein Science&#039;&#039; (1999),&#039;&#039;8&#039;&#039;:1867–1877&lt;/div&gt;</summary>
		<author><name>Chengfeng Ren</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Chengfeng_Ren/Sandbox1&amp;diff=1873121</id>
		<title>Chengfeng Ren/Sandbox1</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Chengfeng_Ren/Sandbox1&amp;diff=1873121"/>
		<updated>2013-12-06T17:13:39Z</updated>

		<summary type="html">&lt;p&gt;Chengfeng Ren: /* IFNβ-1a biological activity and therapeutic effects */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;==IFN Categories and IFNβ-1a sources==&lt;br /&gt;
&lt;br /&gt;
Interferons (IFNs) are a family of helical cytokines that mediate&lt;br /&gt;
antiviral, antiproliferative, and immune modulatory activities in&lt;br /&gt;
response to biological and chemical stimuli. Two types of IFN are recognized on   &lt;br /&gt;
the basis of their physical and biological properties; type I, which   &lt;br /&gt;
contains the monomeric IFNs-α,-β,-τ, and -ω, and type II, the&lt;br /&gt;
only member of which is the dimeric IFN-γ. Representatives of all&lt;br /&gt;
type I and type II IFNs are found in humans, except for IFN-τ,&lt;br /&gt;
which is found only in ruminant ungulates. There are 12 different human IFNs-α;each one&lt;br /&gt;
comprising a different subtype,although 14 different genes have&lt;br /&gt;
been identified, whereas human IFN-β, IFN-ω, and IFN-γare&lt;br /&gt;
encoded by single genes[1].&lt;br /&gt;
&lt;br /&gt;
Interferon-βhas two subtyes, interferon-β-1a and interferon-β-1b. Interferon-β-1a is naturally expressed in numerous cell types in human, including &lt;br /&gt;
fibroblasts, endothelial cells, epithelial cells and various leukocytes, however,Interferon-β-1b is produced in modified E. coli.&lt;br /&gt;
&lt;br /&gt;
Here is a jpg clearly illustrating IFNs categories.&lt;br /&gt;
[[Image:IFN categories.jpg]]&lt;br /&gt;
&lt;br /&gt;
==Structure info. of IFNβ-1a==&lt;br /&gt;
IFNβ-1a consisting of 166 amino acids, around 20KDa. It has 5 helixs.&lt;br /&gt;
&amp;lt;Structure load=&#039;1au1&#039; size=&#039;500&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;IFN structure from PDB&#039; scene=&#039;IFN scene_structure&#039; /&amp;gt;&lt;br /&gt;
&amp;lt;scene name=&#039;56/566498/Ifn_beta_1a_scene_structure/1&#039;&amp;gt;IFN beta 1a structure&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==IFNβ-1a biological activity and therapeutic effects==&lt;br /&gt;
&lt;br /&gt;
IFNβ-1a as well as other family of IFNs has a variety of biological activities, inluding antiviral, antiproliferative, and immune modulatory activities in response to biological and chemical stimuli. &lt;br /&gt;
&lt;br /&gt;
IFNβ-1a is mainly used to treat relapsing forms of multiple sclerosis(MS).&lt;br /&gt;
MS is a life-long disease that affects your nervous system &lt;br /&gt;
by destroying the protective covering (myelin) that surrounds&lt;br /&gt;
your nerve fibers.&lt;br /&gt;
The commercial available drug format is [http://http://www.avonex.com/ Avonex].(Please refer to the drug guide before using it)&lt;br /&gt;
&lt;br /&gt;
==Mechanism of action for IFNβ-1a==&lt;br /&gt;
==Reference==&lt;br /&gt;
&lt;br /&gt;
[1]&#039;&#039;Protein Science&#039;&#039; (1999),&#039;&#039;8&#039;&#039;:1867–1877&lt;/div&gt;</summary>
		<author><name>Chengfeng Ren</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Chengfeng_Ren/Sandbox1&amp;diff=1873120</id>
		<title>Chengfeng Ren/Sandbox1</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Chengfeng_Ren/Sandbox1&amp;diff=1873120"/>
		<updated>2013-12-06T17:13:22Z</updated>

		<summary type="html">&lt;p&gt;Chengfeng Ren: /* IFNβ-1a biological activity and therapeutic effects */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;==IFN Categories and IFNβ-1a sources==&lt;br /&gt;
&lt;br /&gt;
Interferons (IFNs) are a family of helical cytokines that mediate&lt;br /&gt;
antiviral, antiproliferative, and immune modulatory activities in&lt;br /&gt;
response to biological and chemical stimuli. Two types of IFN are recognized on   &lt;br /&gt;
the basis of their physical and biological properties; type I, which   &lt;br /&gt;
contains the monomeric IFNs-α,-β,-τ, and -ω, and type II, the&lt;br /&gt;
only member of which is the dimeric IFN-γ. Representatives of all&lt;br /&gt;
type I and type II IFNs are found in humans, except for IFN-τ,&lt;br /&gt;
which is found only in ruminant ungulates. There are 12 different human IFNs-α;each one&lt;br /&gt;
comprising a different subtype,although 14 different genes have&lt;br /&gt;
been identified, whereas human IFN-β, IFN-ω, and IFN-γare&lt;br /&gt;
encoded by single genes[1].&lt;br /&gt;
&lt;br /&gt;
Interferon-βhas two subtyes, interferon-β-1a and interferon-β-1b. Interferon-β-1a is naturally expressed in numerous cell types in human, including &lt;br /&gt;
fibroblasts, endothelial cells, epithelial cells and various leukocytes, however,Interferon-β-1b is produced in modified E. coli.&lt;br /&gt;
&lt;br /&gt;
Here is a jpg clearly illustrating IFNs categories.&lt;br /&gt;
[[Image:IFN categories.jpg]]&lt;br /&gt;
&lt;br /&gt;
==Structure info. of IFNβ-1a==&lt;br /&gt;
IFNβ-1a consisting of 166 amino acids, around 20KDa. It has 5 helixs.&lt;br /&gt;
&amp;lt;Structure load=&#039;1au1&#039; size=&#039;500&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;IFN structure from PDB&#039; scene=&#039;IFN scene_structure&#039; /&amp;gt;&lt;br /&gt;
&amp;lt;scene name=&#039;56/566498/Ifn_beta_1a_scene_structure/1&#039;&amp;gt;IFN beta 1a structure&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==IFNβ-1a biological activity and therapeutic effects==&lt;br /&gt;
&lt;br /&gt;
IFNβ-1a as well as other family of IFNs has a variety of biological activities, inluding antiviral, antiproliferative, and immune modulatory activities in response to biological and chemical stimuli. &lt;br /&gt;
&lt;br /&gt;
IFNβ-1a is mainly used to treat relapsing forms of multiple sclerosis(MS).&lt;br /&gt;
MS is a life-long disease that affects your nervous system &lt;br /&gt;
by destroying the protective covering (myelin) that surrounds&lt;br /&gt;
your nerve fibers.&lt;br /&gt;
The commercial available drug format is Avonex[http://http://www.avonex.com/ Avonex].(Please refer to the drug guide before using it)&lt;br /&gt;
&lt;br /&gt;
==Mechanism of action for IFNβ-1a==&lt;br /&gt;
==Reference==&lt;br /&gt;
&lt;br /&gt;
[1]&#039;&#039;Protein Science&#039;&#039; (1999),&#039;&#039;8&#039;&#039;:1867–1877&lt;/div&gt;</summary>
		<author><name>Chengfeng Ren</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Chengfeng_Ren/Sandbox1&amp;diff=1873119</id>
		<title>Chengfeng Ren/Sandbox1</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Chengfeng_Ren/Sandbox1&amp;diff=1873119"/>
		<updated>2013-12-06T17:10:38Z</updated>

		<summary type="html">&lt;p&gt;Chengfeng Ren: /* IFNβ-1a biological activity and therapeutic effects */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;==IFN Categories and IFNβ-1a sources==&lt;br /&gt;
&lt;br /&gt;
Interferons (IFNs) are a family of helical cytokines that mediate&lt;br /&gt;
antiviral, antiproliferative, and immune modulatory activities in&lt;br /&gt;
response to biological and chemical stimuli. Two types of IFN are recognized on   &lt;br /&gt;
the basis of their physical and biological properties; type I, which   &lt;br /&gt;
contains the monomeric IFNs-α,-β,-τ, and -ω, and type II, the&lt;br /&gt;
only member of which is the dimeric IFN-γ. Representatives of all&lt;br /&gt;
type I and type II IFNs are found in humans, except for IFN-τ,&lt;br /&gt;
which is found only in ruminant ungulates. There are 12 different human IFNs-α;each one&lt;br /&gt;
comprising a different subtype,although 14 different genes have&lt;br /&gt;
been identified, whereas human IFN-β, IFN-ω, and IFN-γare&lt;br /&gt;
encoded by single genes[1].&lt;br /&gt;
&lt;br /&gt;
Interferon-βhas two subtyes, interferon-β-1a and interferon-β-1b. Interferon-β-1a is naturally expressed in numerous cell types in human, including &lt;br /&gt;
fibroblasts, endothelial cells, epithelial cells and various leukocytes, however,Interferon-β-1b is produced in modified E. coli.&lt;br /&gt;
&lt;br /&gt;
Here is a jpg clearly illustrating IFNs categories.&lt;br /&gt;
[[Image:IFN categories.jpg]]&lt;br /&gt;
&lt;br /&gt;
==Structure info. of IFNβ-1a==&lt;br /&gt;
IFNβ-1a consisting of 166 amino acids, around 20KDa. It has 5 helixs.&lt;br /&gt;
&amp;lt;Structure load=&#039;1au1&#039; size=&#039;500&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;IFN structure from PDB&#039; scene=&#039;IFN scene_structure&#039; /&amp;gt;&lt;br /&gt;
&amp;lt;scene name=&#039;56/566498/Ifn_beta_1a_scene_structure/1&#039;&amp;gt;IFN beta 1a structure&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==IFNβ-1a biological activity and therapeutic effects==&lt;br /&gt;
&lt;br /&gt;
IFNβ-1a as well as other family of IFNs has a variety of biological activities, inluding antiviral, antiproliferative, and immune modulatory activities in response to biological and chemical stimuli. &lt;br /&gt;
&lt;br /&gt;
IFNβ-1a is mainly used to treat relapsing forms of multiple sclerosis(MS).&lt;br /&gt;
MS is a life-long disease that affects your nervous system &lt;br /&gt;
by destroying the protective covering (myelin) that surrounds&lt;br /&gt;
your nerve fibers.&lt;br /&gt;
The commercial available drug format is [Anonex].(Please refer to the drug guide before using it)&lt;br /&gt;
&lt;br /&gt;
==Mechanism of action for IFNβ-1a==&lt;br /&gt;
==Reference==&lt;br /&gt;
&lt;br /&gt;
[1]&#039;&#039;Protein Science&#039;&#039; (1999),&#039;&#039;8&#039;&#039;:1867–1877&lt;/div&gt;</summary>
		<author><name>Chengfeng Ren</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Chengfeng_Ren/Sandbox1&amp;diff=1873115</id>
		<title>Chengfeng Ren/Sandbox1</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Chengfeng_Ren/Sandbox1&amp;diff=1873115"/>
		<updated>2013-12-06T17:03:08Z</updated>

		<summary type="html">&lt;p&gt;Chengfeng Ren: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;==IFN Categories and IFNβ-1a sources==&lt;br /&gt;
&lt;br /&gt;
Interferons (IFNs) are a family of helical cytokines that mediate&lt;br /&gt;
antiviral, antiproliferative, and immune modulatory activities in&lt;br /&gt;
response to biological and chemical stimuli. Two types of IFN are recognized on   &lt;br /&gt;
the basis of their physical and biological properties; type I, which   &lt;br /&gt;
contains the monomeric IFNs-α,-β,-τ, and -ω, and type II, the&lt;br /&gt;
only member of which is the dimeric IFN-γ. Representatives of all&lt;br /&gt;
type I and type II IFNs are found in humans, except for IFN-τ,&lt;br /&gt;
which is found only in ruminant ungulates. There are 12 different human IFNs-α;each one&lt;br /&gt;
comprising a different subtype,although 14 different genes have&lt;br /&gt;
been identified, whereas human IFN-β, IFN-ω, and IFN-γare&lt;br /&gt;
encoded by single genes[1].&lt;br /&gt;
&lt;br /&gt;
Interferon-βhas two subtyes, interferon-β-1a and interferon-β-1b. Interferon-β-1a is naturally expressed in numerous cell types in human, including &lt;br /&gt;
fibroblasts, endothelial cells, epithelial cells and various leukocytes, however,Interferon-β-1b is produced in modified E. coli.&lt;br /&gt;
&lt;br /&gt;
Here is a jpg clearly illustrating IFNs categories.&lt;br /&gt;
[[Image:IFN categories.jpg]]&lt;br /&gt;
&lt;br /&gt;
==Structure info. of IFNβ-1a==&lt;br /&gt;
IFNβ-1a consisting of 166 amino acids, around 20KDa. It has 5 helixs.&lt;br /&gt;
&amp;lt;Structure load=&#039;1au1&#039; size=&#039;500&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;IFN structure from PDB&#039; scene=&#039;IFN scene_structure&#039; /&amp;gt;&lt;br /&gt;
&amp;lt;scene name=&#039;56/566498/Ifn_beta_1a_scene_structure/1&#039;&amp;gt;IFN beta 1a structure&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==IFNβ-1a biological activity and therapeutic effects==&lt;br /&gt;
==Mechanism of action for IFNβ-1a==&lt;br /&gt;
==Reference==&lt;br /&gt;
&lt;br /&gt;
[1]&#039;&#039;Protein Science&#039;&#039; (1999),&#039;&#039;8&#039;&#039;:1867–1877&lt;/div&gt;</summary>
		<author><name>Chengfeng Ren</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Chengfeng_Ren/Sandbox1&amp;diff=1873114</id>
		<title>Chengfeng Ren/Sandbox1</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Chengfeng_Ren/Sandbox1&amp;diff=1873114"/>
		<updated>2013-12-06T17:00:53Z</updated>

		<summary type="html">&lt;p&gt;Chengfeng Ren: /* Structure info. of IFNβ-1a */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;==IFN Categories and IFNβ-1a sources==&lt;br /&gt;
&lt;br /&gt;
Interferons (IFNs) are a family of helical cytokines that mediate&lt;br /&gt;
antiviral, antiproliferative, and immune modulatory activities in&lt;br /&gt;
response to biological and chemical stimuli. Two types of IFN are recognized on   &lt;br /&gt;
the basis of their physical and biological properties; type I, which   &lt;br /&gt;
contains the monomeric IFNs-α,-β,-τ, and -ω, and type II, the&lt;br /&gt;
only member of which is the dimeric IFN-γ. Representatives of all&lt;br /&gt;
type I and type II IFNs are found in humans, except for IFN-τ,&lt;br /&gt;
which is found only in ruminant ungulates. There are 12 different human IFNs-α;each one&lt;br /&gt;
comprising a different subtype,although 14 different genes have&lt;br /&gt;
been identified, whereas human IFN-β, IFN-ω, and IFN-γare&lt;br /&gt;
encoded by single genes[1].&lt;br /&gt;
&lt;br /&gt;
Interferon-βhas two subtyes, interferon-β-1a and interferon-β-1b. Interferon-β-1a is naturally expressed in numerous cell types in human, including &lt;br /&gt;
fibroblasts, endothelial cells, epithelial cells and various leukocytes, however,Interferon-β-1b is produced in modified E. coli.&lt;br /&gt;
&lt;br /&gt;
Here is a jpg clearly illustrating IFNs categories.&lt;br /&gt;
[[Image:IFN categories.jpg]]&lt;br /&gt;
&lt;br /&gt;
&amp;lt;Structure load=&#039;56/566498/Ifn_beta_1a_scene_structure/1&#039; size=&#039;500&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;Insert caption here&#039; scene=&#039;Insert optional scene name here&#039; /&amp;gt;&lt;br /&gt;
==Structure info. of IFNβ-1a==&lt;br /&gt;
IFNβ-1a consisting of 166 amino acids, around 20KDa. It has 5 helixs.&lt;br /&gt;
&amp;lt;Structure load=&#039;1au1&#039; size=&#039;500&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;IFN structure from PDB&#039; scene=&#039;IFN scene_structure&#039; /&amp;gt;&lt;br /&gt;
&amp;lt;scene name=&#039;56/566498/Ifn_beta_1a_scene_structure/1&#039;&amp;gt;IFN beta 1a structure&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==IFNβ-1a biological activity and therapeutic effects==&lt;br /&gt;
==Mechanism of action for IFNβ-1a==&lt;br /&gt;
==Reference==&lt;br /&gt;
&lt;br /&gt;
[1]&#039;&#039;Protein Science&#039;&#039; (1999),&#039;&#039;8&#039;&#039;:1867–1877&lt;/div&gt;</summary>
		<author><name>Chengfeng Ren</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Chengfeng_Ren/Sandbox1&amp;diff=1873112</id>
		<title>Chengfeng Ren/Sandbox1</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Chengfeng_Ren/Sandbox1&amp;diff=1873112"/>
		<updated>2013-12-06T16:59:50Z</updated>

		<summary type="html">&lt;p&gt;Chengfeng Ren: /* Structure info. of IFNβ-1a */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;==IFN Categories and IFNβ-1a sources==&lt;br /&gt;
&lt;br /&gt;
Interferons (IFNs) are a family of helical cytokines that mediate&lt;br /&gt;
antiviral, antiproliferative, and immune modulatory activities in&lt;br /&gt;
response to biological and chemical stimuli. Two types of IFN are recognized on   &lt;br /&gt;
the basis of their physical and biological properties; type I, which   &lt;br /&gt;
contains the monomeric IFNs-α,-β,-τ, and -ω, and type II, the&lt;br /&gt;
only member of which is the dimeric IFN-γ. Representatives of all&lt;br /&gt;
type I and type II IFNs are found in humans, except for IFN-τ,&lt;br /&gt;
which is found only in ruminant ungulates. There are 12 different human IFNs-α;each one&lt;br /&gt;
comprising a different subtype,although 14 different genes have&lt;br /&gt;
been identified, whereas human IFN-β, IFN-ω, and IFN-γare&lt;br /&gt;
encoded by single genes[1].&lt;br /&gt;
&lt;br /&gt;
Interferon-βhas two subtyes, interferon-β-1a and interferon-β-1b. Interferon-β-1a is naturally expressed in numerous cell types in human, including &lt;br /&gt;
fibroblasts, endothelial cells, epithelial cells and various leukocytes, however,Interferon-β-1b is produced in modified E. coli.&lt;br /&gt;
&lt;br /&gt;
Here is a jpg clearly illustrating IFNs categories.&lt;br /&gt;
[[Image:IFN categories.jpg]]&lt;br /&gt;
&lt;br /&gt;
&amp;lt;Structure load=&#039;56/566498/Ifn_beta_1a_scene_structure/1&#039; size=&#039;500&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;Insert caption here&#039; scene=&#039;Insert optional scene name here&#039; /&amp;gt;&lt;br /&gt;
==Structure info. of IFNβ-1a==&lt;br /&gt;
IFNβ-1a consisting of 166 amino acids, around 20KDa. It has 5 helixs.&lt;br /&gt;
&amp;lt;Structure load=&#039;1au1&#039; size=&#039;500&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;IFN structure from PDB&#039; scene=&#039;IFN scene_structure&#039; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==IFNβ-1a biological activity and therapeutic effects==&lt;br /&gt;
==Mechanism of action for IFNβ-1a==&lt;br /&gt;
==Reference==&lt;br /&gt;
&lt;br /&gt;
[1]&#039;&#039;Protein Science&#039;&#039; (1999),&#039;&#039;8&#039;&#039;:1867–1877&lt;/div&gt;</summary>
		<author><name>Chengfeng Ren</name></author>
	</entry>
</feed>