https://proteopedia.org/api.php?action=feedcontributions&feedformat=atom&user=Edward+A.+Berry 2026-09-22T09:09:09Z User contributions MediaWiki 1.43.8 https://proteopedia.org/index.php?title=Talk:2fbw&diff=3440594 2021-08-23T21:42:02Z

<p>Edward A. Berry: /* Correction */</p> <hr /> <div>==Correction==<br /> The heterocyclic ring of carboxin is modeled with the wrong orientation in [[2fbw]]. Ruprecht et al. have deposited a corrected structure as [[2wqy]]. The original authors agree with this correction as indicated [http://www.cytbc1.com/SQR/carboxinsnafu.txt here]. [[User:Edward A. Berry|Edward A. Berry]] 21:52, 21 May 2014 (IDT)&lt;br&gt;<br /> Thanks to the new PDB update policy, a corrected and further refined set of coordinates was uploaded to 2fbw in February 2021, to replace the original structure. [[User:Edward A. Berry|Edward A. Berry]] 21:39, 23 August 2021 (UTC)</div>

Edward A. Berry https://proteopedia.org/index.php?title=Talk:2fbw&diff=3440593 2021-08-23T21:39:33Z

<p>Edward A. Berry: /* Correction */ update- the coordinaes have been corrected now.</p> <hr /> <div>==Correction==<br /> The heterocyclic ring of carboxin is modeled with the wrong orientation in [[2fbw]]. Ruprecht et al. have deposited a corrected structure as [[2wqy]]. The original authors agree with this correction as indicated [http://www.cytbc1.com/SQR/carboxinsnafu.txt here]. [[User:Edward A. Berry|Edward A. Berry]] 21:52, 21 May 2014 (IDT)&lt;br&gt;<br /> Thanks to the new PDB update policy, a corrected and further refined set of coordinates was uploaded in February 2021 to replace the original structure. [[User:Edward A. Berry|Edward A. Berry]] 21:39, 23 August 2021 (UTC)</div>

Edward A. Berry https://proteopedia.org/index.php?title=Talk:2bs2&diff=2060304 2014-11-17T19:39:16Z

<p>Edward A. Berry: New page: ==cis-ASP in flavoprotein?== The poor-fitting region around A398 can be improved by modeling the peptide bond between 397 and 398 as &quot;cis&quot;. This seems to be an example of the unusual but n...</p> <hr /> <div>==cis-ASP in flavoprotein?==<br /> The poor-fitting region around A398 can be improved by modeling the peptide bond between 397 and 398 as &quot;cis&quot;. This seems to be an example of the unusual but not unheard-of &quot;non-Pro cis peptide&quot;, since A398 is Asp. However it aligns with non-Pro cis peptides in Complex II from chicken ([2H88], Ser402) or E. coli ([2WDQ], Ser393). <br /> <br /> == Function ==<br /> <br /> == Disease ==<br /> <br /> == Relevance ==<br /> <br /> == Structural highlights ==<br /> <br /> == References ==<br /> &lt;references/&gt;</div>

Edward A. Berry https://proteopedia.org/index.php?title=Talk:2fbw&diff=2042395 2014-10-12T21:45:44Z

<p>Edward A. Berry: correct pdbid</p> <hr /> <div>==Correction==<br /> The heterocyclic ring of carboxin is modeled with the wrong orientation in [[2fbw]]. Ruprecht et al. have deposited a corrected structure as [[2wqy]]. The original authors agree with this correction as indicated [http://sb20.lbl.gov/SQR/carboxinsnafu.txt here]. [[User:Edward A. Berry|Edward A. Berry]] 21:52, 21 May 2014 (IDT)</div>

Edward A. Berry https://proteopedia.org/index.php?title=Talk:2fbw&diff=1934674 2014-05-21T19:30:46Z

<p>Edward A. Berry: delete inappropriate procedural question</p> <hr /> <div>==Correction==<br /> The heterocyclic ring of carboxin is modeled with the wrong orientation in 2BFW. Ruprecht et al. have deposited a corrected structure as 2WYQ. The original authors agree with this correction as indicated [http://sb20.lbl.gov/SQR/carboxinsnafu.txt here]. [[User:Edward A. Berry|Edward A. Berry]] 21:52, 21 May 2014 (IDT)</div>

Edward A. Berry https://proteopedia.org/index.php?title=Talk:2fbw&diff=1934673 2014-05-21T18:52:20Z

<p>Edward A. Berry: New page: ==Correction== The heterocyclic ring of carboxin is modeled with the wrong orientation in 2BFW. Ruprecht et al. have deposited a corrected structure as 2WYQ. The original authors agree wit...</p> <hr /> <div>==Correction==<br /> The heterocyclic ring of carboxin is modeled with the wrong orientation in 2BFW. Ruprecht et al. have deposited a corrected structure as 2WYQ. The original authors agree with this correction as indicated [http://sb20.lbl.gov/SQR/carboxinsnafu.txt here]. [[User:Edward A. Berry|Edward A. Berry]] 21:52, 21 May 2014 (IDT)<br /> <br /> ==Editing==<br /> The above correction should probably be on the main page where someone can see it, but the main page seems to be locked to editing. Is this the case, and if so is the talk place the correct place for such information? [[User:Edward A. Berry|Edward A. Berry]] 21:52, 21 May 2014 (IDT)</div>

Edward A. Berry