Proteopedia - User contributions [en]

User:Emi Nakayama

2009-06-02T07:59:45Z

Emi Nakayama:

Assistant professor of Osaka University,
Participant in one-day workshop taught by Eric Martz and Keiichi Namba.

*[[User:Emi Nakayama/TRIM5a Homology Models]]

File:SPRY.human.model.pdb

2009-06-02T07:56:30Z

Emi Nakayama: SPRY domain of human TRIM5a made by Kasia based on 2VOL.

SPRY domain of human TRIM5a made by Kasia based on 2VOL.

File:FILE consurf1243922409 pipe.pdb

2009-06-02T06:19:48Z

Emi Nakayama:

User:Emi Nakayama/TRIM5a Homology Models

2009-06-02T05:53:58Z

Emi Nakayama:

<applet size='450' frame='true' align='right' caption='Insert caption here'
scene='User:Emi_Nakayama/TRIM5a_Homology_Models/Kasia-swiss-pdb/2' />

Morph (<scene name='User:Emi_Nakayama/TRIM5a_Homology_Models/Kasia-swiss-pdb/2'>initial scene</scene>) of Swiss-Model's homology model (template [[2fbe]] chain A) to Kasia:s homology model (template [[2vol]].
<scene name='User:Emi_Nakayama/TRIM5a_Homology_Models/Kasia-swiss-pdb/3'>Secondary structure</scene>

The structural difference between these two homology models represents the difference between the templates used, namely [[2fbe]] chain A and [[2vol]].

User:Emi Nakayama/TRIM5a Homology Models

2009-06-02T05:52:21Z

Emi Nakayama:

<applet size='450' frame='true' align='right' caption='Insert caption here'
scene='User:Emi_Nakayama/TRIM5a_Homology_Models/Kasia-swiss-pdb/2' />
Morph (<scene name='User:Emi_Nakayama/TRIM5a_Homology_Models/Kasia-swiss-pdb/2'>initial scene</scene>) of Kasia:s homology model to Swiss-Model:s homology model (template [[2fbe]] chain A).
<scene name='User:Emi_Nakayama/TRIM5a_Homology_Models/Kasia-swiss-pdb/3'>Secondary structure</scene>

The structural difference between these two homology models represents the difference between the templates used, namely [[2fbe]] chain A and [[2vol]].

User:Emi Nakayama/TRIM5a Homology Models

2009-06-02T05:41:14Z

Emi Nakayama:

<applet size='450' frame='true' align='right' caption='Insert caption here'
scene='User:Emi_Nakayama/TRIM5a_Homology_Models/Kasia-swiss-pdb/2' />
Morph (<scene name='User:Emi_Nakayama/TRIM5a_Homology_Models/Kasia-swiss-pdb/2'>initial scene</scene>) of Kasia:s homology model to Swiss-Model:s homology model (template [[2fbe]] chain A).
<scene name='User:Emi_Nakayama/TRIM5a_Homology_Models/Kasia-swiss-pdb/3'>Secondary structure</scene>

User:Emi Nakayama/TRIM5a Homology Models

2009-06-02T05:35:00Z

Emi Nakayama:

User:Emi Nakayama/TRIM5a Homology Models

2009-06-02T05:32:49Z

Emi Nakayama:

<applet load='Insert PDB code or filename here' size='450' frame='true' align='right' caption='Insert caption here' />
<scene name='User:Emi_Nakayama/TRIM5a_Homology_Models/Kasia-swiss-pdb/2'>Morph</scene> of Kasia:s homology model to Swiss-Model:s homology model (template [[2fbe]] chain A).

User:Emi Nakayama/TRIM5a Homology Models

2009-06-02T05:27:53Z

Emi Nakayama:

<applet load='Insert PDB code or filename here' size='300' frame='true' align='right' caption='Insert caption here' />
<scene name='User:Emi_Nakayama/TRIM5a_Homology_Models/Kasia-swiss-pdb/1'>Morph</scene> of Kasia:s homology model to Swiss-Model:s homology model (template [[2fbe]] chain A).

File:Kasia-Swiss.pdb

2009-06-02T05:20:00Z

Emi Nakayama: Homology model of human TRIM5a made by Kasia, morphed by the Yale Morph Server to homology model made by Swiss Model using 2fbe:A as template.

Homology model of human TRIM5a made by Kasia, morphed by the Yale Morph Server to homology model made by Swiss Model using 2fbe:A as template.

User:Emi Nakayama/TRIM5a Homology Models

2009-06-02T05:13:37Z

Emi Nakayama: created page