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	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_322&amp;diff=1224757</id>
		<title>Sandbox Reserved 322</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_322&amp;diff=1224757"/>
		<updated>2011-04-04T03:17:05Z</updated>

		<summary type="html">&lt;p&gt;Eric Ginter: &lt;/p&gt;
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{{STRUCTURE_3mmr|  PDB=3mmr  |  SCENE=  }}&lt;br /&gt;
== &#039;&#039;&#039;Arginase&#039;&#039;&#039; ==&lt;br /&gt;
&lt;br /&gt;
===&#039;&#039;&#039;Introduction&#039;&#039;&#039;===&lt;br /&gt;
----&lt;br /&gt;
[[Image:Arginases_homotrimer.jpg|thumb|left|300px|Figure 1: Liver arginase illustrating that the general homotrimeric strucutre of arginase&amp;lt;ref name=&amp;quot;Homotrimer&amp;quot;&amp;gt;accessed April 3,2011: http://en.wikipedia.org/wiki/Arginase.&amp;lt;/ref&amp;gt;.]]&lt;br /&gt;
&lt;br /&gt;
Arginase is a 105 kD homotrimeric metallo-protein, as shown in figure 1, and catalysis the hydrolysis of arginine to ornithine and urea by means of a binuclear spin-coupled Mn&amp;lt;sup&amp;gt;2+&amp;lt;/sup&amp;gt; cluster in the active site&amp;lt;ref name=&amp;quot;a&amp;quot;&amp;gt;PMID: 19456858 &amp;lt;/ref&amp;gt;. Many organisms contain the enzyme arginase, for example &#039;&#039;Homo sapiens&#039;&#039; and &#039;&#039;Plasmodium falciparum&#039;&#039;, a parasite that causes cerebral malaria&amp;lt;ref name=&amp;quot;b&amp;quot;&amp;gt;PMID: 20527960 &amp;lt;/ref&amp;gt;. In humans there are two forms of arginases that have evolved with differing tissue distributions and sub-cellular locations in mammals&amp;lt;ref name=&amp;quot;c&amp;quot;&amp;gt;PMID: 15766238 &amp;lt;/ref&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
The two types of arginase is found in mammalian, are arginase I (hAI) and arginases II (hAII)&amp;lt;ref name=&amp;quot;c&amp;quot;/&amp;gt;. Arginase I is found predominantly in the liver, where it catalyzes the final cytosolic step of the urea cycle&amp;lt;ref name=&amp;quot;c&amp;quot;/&amp;gt;. Arginases II is a mitochondrial enzyme that does not appear to function in the urea cycle and is more widely disturbed in numerous tissues, for example kidney, brains, skeletal muscle, mammary gland and penile corpus cavernosum&amp;lt;ref name=&amp;quot;c&amp;quot;/&amp;gt;. Recent studies show that &#039;&#039;Plasmodium falciparum&#039;&#039; arginase (PFA) plays a role in systemic depletion of arginine levels, which in turn has been associated with human cerebral malaria pathogenesis&amp;lt;ref name=&amp;quot;a&amp;quot;/&amp;gt;. In addition the arginase fold is part of the [http://en.wikipedia.org/wiki/Ureohydrolase &#039;&#039;ureohydrolase&#039;&#039;] superfamily, which also includes agmatinase, histone de-acetylase and acetylpolyamine amidohydrolase&amp;lt;ref name=&amp;quot;a&amp;quot;/&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
===&#039;&#039;&#039;Structure and Function&#039;&#039;&#039;===&lt;br /&gt;
----&lt;br /&gt;
[[Image:Arginine.jpg|thumb|right|300px|Figure 2: General reaction of arginase hydrolyzing L-arginine to urea and L-ornithine adopted from Christianson&amp;lt;ref name=&amp;quot;c&amp;quot;/&amp;gt;.]]&lt;br /&gt;
&lt;br /&gt;
In general arginase is a homotrimeric enzyme, which is present in the fifth and final step of the urea cycle for mammals. In humans, hAI converts L-arginine into L-orinithine and urea as shown in figure 2. Human arginase II plays a role in L-arginine homeostasis, by regulating L-arginine concentrations from cellular biosynthetic reactions such as nitric oxide (NO) biosynthesis&amp;lt;ref name=&amp;quot;c&amp;quot;/&amp;gt;. Additionally &#039;&#039;Plasmodium falciparum&#039;&#039; arginase is comparable to human arginase, due to the fact that it is 27% identical with human aginase I and II&amp;lt;ref name=&amp;quot;b&amp;quot;/&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
Overall arginase is a homotrimeric metallo-enzyme with a binuclear manganese &amp;lt;scene name=&#039;Sandbox_Reserved_322/Mn/5&#039;&amp;gt;MN&amp;lt;/scene&amp;gt; cluster in each monomer as shown in the PDB identifier 3mmr&amp;lt;ref name=&amp;quot;c&amp;quot;/&amp;gt;. The overall fold of the arginase monomer belongs to the α/β protein class with a globular structure&amp;lt;ref name=&amp;quot;d&amp;quot;&amp;gt;PMID: 8849731 &amp;lt;/ref&amp;gt;. &lt;br /&gt;
One site of the active-site cleft is partially defined by the central 8-stranded &amp;lt;scene name=&#039;Sandbox_Reserved_322/8-stranded_beta-sheet/1&#039;&amp;gt;β-sheet&amp;lt;/scene&amp;gt;, and the &amp;lt;scene name=&#039;Sandbox_Reserved_322/Metal_binding_sites/1&#039;&amp;gt;metal binding sites&amp;lt;/scene&amp;gt; is located on the edge of the β-sheet&amp;lt;ref name=&amp;quot;d&amp;quot;/&amp;gt;. The metal ion that is more deeply situated in the active-site cleft is designated &amp;lt;scene name=&#039;Sandbox_Reserved_322/Mn2a/1&#039;&amp;gt;Mn2+A&amp;lt;/scene&amp;gt; while the other metal ion is designated Mn&amp;lt;sup&amp;gt;2+&amp;lt;/sup&amp;gt;&amp;lt;sub&amp;gt;B&amp;lt;/sub&amp;gt;. In &#039;&#039;Plasmodium falciparum&#039;&#039; arginase Mn&amp;lt;sup&amp;gt;2+&amp;lt;/sup&amp;gt;&amp;lt;sub&amp;gt;A&amp;lt;/sub&amp;gt; is coordinated by &amp;lt;scene name=&#039;Sandbox_Reserved_322/Mna/1&#039;&amp;gt;His 193, Asp 216, Asp 220, Asp 323&amp;lt;/scene&amp;gt; and a solvent molecule, with a square pyramidal geometry&amp;lt;ref name=&amp;quot;b&amp;quot;/&amp;gt;&amp;lt;ref name=&amp;quot;d&amp;quot;/&amp;gt;. The solvent molecule bridges both metal ions and also donates a hydrogen bond to Asp 220&amp;lt;ref name=&amp;quot;b&amp;quot;/&amp;gt;&amp;lt;ref name=&amp;quot;d&amp;quot;/&amp;gt;. Mn&amp;lt;sup&amp;gt;2+&amp;lt;/sup&amp;gt;&amp;lt;sub&amp;gt;B&amp;lt;/sub&amp;gt; is coordinated by &amp;lt;scene name=&#039;Sandbox_Reserved_322/Mnb/1&#039;&amp;gt;His 218, Asp 216, Asp 323, Asp 325&amp;lt;/scene&amp;gt; and the bridging solvent molecule in a distorted octahedral fashion&amp;lt;ref name=&amp;quot;d&amp;quot;/&amp;gt;. All metal ligands except for Asp 220 make hydrogen-bond interactions with other protein residues, and these interactions contribute to the stability of the metal binding site&amp;lt;ref name=&amp;quot;b&amp;quot;/&amp;gt;&amp;lt;ref name=&amp;quot;d&amp;quot;/&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
There are three different types of bridging metal ligands that facilitate the observed spin coupling between Mn&amp;lt;sup&amp;gt;2+&amp;lt;/sup&amp;gt;&amp;lt;sub&amp;gt;A&amp;lt;/sub&amp;gt; and Mn&amp;lt;sup&amp;gt;2+&amp;lt;/sup&amp;gt;&amp;lt;sub&amp;gt;B&amp;lt;/sub&amp;gt;&amp;lt;ref name=&amp;quot;d&amp;quot;/&amp;gt;. For the first ligand, the carboxylate side chain of Asp 216 is a syn-syn bidentate bridging ligand, with Oδ1 coordinated to Mn&amp;lt;sup&amp;gt;2+&amp;lt;/sup&amp;gt;&amp;lt;sub&amp;gt;A&amp;lt;/sub&amp;gt; and Oδ2 coordinated to Mn&amp;lt;sup&amp;gt;2+&amp;lt;/sup&amp;gt;&amp;lt;sub&amp;gt;B&amp;lt;/sub&amp;gt;&amp;lt;ref name=&amp;quot;d&amp;quot;/&amp;gt;. For the second ligand, the carboxylate side chain of Asp 323 is a monodentate bridging ligand, with Oδ1 coordinated to both Mn&amp;lt;sup&amp;gt;2+&amp;lt;/sup&amp;gt;&amp;lt;sub&amp;gt;A&amp;lt;/sub&amp;gt; and Mn&amp;lt;sup&amp;gt;2+&amp;lt;/sup&amp;gt;&amp;lt;sub&amp;gt;B&amp;lt;/sub&amp;gt; with anti- and syn-coordination stereo-chemistry, respectively&amp;lt;ref name=&amp;quot;b&amp;quot;/&amp;gt;&amp;lt;ref name=&amp;quot;d&amp;quot;/&amp;gt;. And finally the third ligand, is the solvent molecule bridges both manganese ion symmetrically&amp;lt;ref name=&amp;quot;d&amp;quot;/&amp;gt;. Also the Mn&amp;lt;sup&amp;gt;2+&amp;lt;/sup&amp;gt; ions coordinate with water, orienting and stabilizing the molecule and allowing water to act as a nucleophile and attack L-arginine, hydrolyzing it into orinithine and urea&amp;lt;ref name=&amp;quot;c&amp;quot;/&amp;gt;. Overall the two manganese metal ion in arginase maintain the proper function of the enzyme&amp;lt;ref name=&amp;quot;b&amp;quot;/&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
===&#039;&#039;&#039;Mechanism&#039;&#039;&#039;===&lt;br /&gt;
----&lt;br /&gt;
[[Image:Mechanism_of_arginase.jpg|thumb|right|300px|Figure 3: Proposed mechanism of arginase hydrolyzing L-arginine to urea and L-ornithine adopted from Kanyo and colleagues&amp;lt;ref name=&amp;quot;d&amp;quot;/&amp;gt;.]]&lt;br /&gt;
&lt;br /&gt;
In general arginase is known to convert L-arginine into urea and L-ornithine, via hydrolysis, the proposed mechanism is adopted from Kanyo and colleagues as shown in figure 3&amp;lt;ref name=&amp;quot;d&amp;quot;/&amp;gt;. In the first step of the hydrolytic mechanism, Asp 220 stabilizes the metal-bridging hydroxide ion with a hydrogen bond during a nucleophilic attack at the guanidinium carbon of arginine&amp;lt;ref name=&amp;quot;b&amp;quot;/&amp;gt;&amp;lt;ref name=&amp;quot;d&amp;quot;/&amp;gt;. The resulting tetrahedral intermediate fall apart once a proton is transferred to the amino group of ornithine, and the proton transfer is mediated by Asp 220&amp;lt;ref name=&amp;quot;b&amp;quot;/&amp;gt;&amp;lt;ref name=&amp;quot;d&amp;quot;/&amp;gt;. It is proposed that His 233 shuttles a proton from bulk solvent to the ε-amino group of ornithine, before the product dissociation, as well a water molecule displaces urea&amp;lt;ref name=&amp;quot;b&amp;quot;/&amp;gt;&amp;lt;ref name=&amp;quot;d&amp;quot;/&amp;gt;. In addition, the metal coordination facilitates the ionization of this water molecule to regenerate a nucleophilic hydroxide ion&amp;lt;ref name=&amp;quot;d&amp;quot;/&amp;gt;. During this process a proton transfer occurs to the bulk solvent and is mediated by shuttle-group His 233&amp;lt;ref name=&amp;quot;b&amp;quot;/&amp;gt;&amp;lt;ref name=&amp;quot;d&amp;quot;/&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
===&#039;&#039;&#039;Arginase and the Physiology of Sexual Arousal&#039;&#039;&#039;===&lt;br /&gt;
----&lt;br /&gt;
[[Image:Arginine_catabloism_by_arginase_and_NO_synthase.jpg|thumb|left|300px|Figure 4: Chemical reaction of arginine, illustrating how arginase and NO synthase compete for arginine&amp;lt;ref name=&amp;quot;c&amp;quot;/&amp;gt;.]]&lt;br /&gt;
Female sexual arousal disorder is defined as an inability to achieve or maintain sufficient sexual excitement, including clitoral erection and genital engorgement, and it is a physiologically analogous to male erectile dysfunction, which is defined as a  deficiency in genital blood circulation which compromises the hemodynamic of erectons&amp;lt;ref name=&amp;quot;c&amp;quot;/&amp;gt;. Nitric oxide (NO) is the principle mediator of erectile functions and governs nonadrenergic, noncholinergic neurotransmission in penile corpus cavernosum smooth muscle&amp;lt;ref name=&amp;quot;c&amp;quot;/&amp;gt;. NO cause’s rapid relaxation of smooth muscle tissue and thereby facilitates the engorgement of the corpus cavernosum&amp;lt;ref name=&amp;quot;c&amp;quot;/&amp;gt;. Thus, NO synthase is a critical enzyme in the physiology of sexual arousal&amp;lt;ref name=&amp;quot;c&amp;quot;/&amp;gt;. Also, human arginase II is a critical enzyme in the physiology of sexual arousal, due to the fact it coexpressed with NO synthase in smooth muscle tissue&amp;lt;ref name=&amp;quot;c&amp;quot;/&amp;gt;. Given that hAII and NO synthase compete for the same substrate L-arginine as shown in figure 4, arginase appears to attenuate NO synthase activity and NO-dependent smooth muscle relaxation by depleting the substrate pool of L-arginine that would be available to NO synthase&amp;lt;ref name=&amp;quot;c&amp;quot;/&amp;gt;. In addition arginase is inhibited by the boronic acid inhibitor (&amp;lt;scene name=&#039;Sandbox_Reserved_322/Abh/1&#039;&amp;gt;ABH&amp;lt;/scene&amp;gt;), which maintains L-arginine concentrations, which in turn enhances NO synthase activity and NO-dependent smooth muscle relaxation in tissue&amp;lt;ref name=&amp;quot;c&amp;quot;/&amp;gt;. Thus over expression of human arginase II contributes to erectile dysfunction, and human penile arginase is a potential target for the treatment of male sexual dysfunction&amp;lt;ref name=&amp;quot;c&amp;quot;/&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
===&#039;&#039;&#039;Reference&#039;&#039;&#039;===&lt;br /&gt;
----&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Eric Ginter</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_316&amp;diff=1224680</id>
		<title>Sandbox Reserved 316</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_316&amp;diff=1224680"/>
		<updated>2011-04-04T01:58:40Z</updated>

		<summary type="html">&lt;p&gt;Eric Ginter: &lt;/p&gt;
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==Introduction==&lt;br /&gt;
[[Image:svs.jpg|300px|left|thumb|]]&#039;&#039;&#039;Simvastatin synthase&#039;&#039;&#039; (LovD) is a 46 kDa acyltransferase found in the lovastatin biosynthetic pathway and catalyzes the final step of lovastatin biosynthesis&amp;lt;ref name=&amp;quot;paper4&amp;quot;&amp;gt;PMID:&lt;br /&gt;
17113998&amp;lt;/ref&amp;gt;. Pictured here is the generated double mutant C40A/C60N (G0), from wild type LovD (Figure 1).&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
This enzyme is isolated from the natural product biosynthetic pathways of [http://en.wikipedia.org/wiki/Aspergillus_terreus &#039;&#039;Aspergillus terreus&#039;&#039;], specifically the polyketide biosynthetic pathway. Simvastatin Synthase  converts the inactive monacolin J acid (MJA) by dimethylbutyryl chloride to yield the protected form of simvastatin (Figure 2), which subsequently undergoes lactonization to yield [http://en.wikipedia.org/wiki/Simvastatin &#039;&#039;simvastatin&#039;&#039;]&amp;lt;ref name=&amp;quot;paper5&amp;quot;&amp;gt;PMID:19875080&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
[[Image:Sim_mja.jpg]] &lt;br /&gt;
&lt;br /&gt;
LovD can also synthesize the blockbuster drug simvastatin using MJA and a synthetic α-dimethylbutyryl thioester&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;.&lt;br /&gt;
==Exploring the structure==&lt;br /&gt;
{{STRUCTURE_3hle |  PDB=3hle  |  SCENE=Sandbox_Reserved_316/Default/1}} &lt;br /&gt;
&amp;lt;scene name=&#039;Sandbox_Reserved_316/Default/1&#039;&amp;gt;LovD&amp;lt;/scene&amp;gt; is a 413-amino acid protein predicted to have an α/β hydrolase fold based on primary sequence analysis&amp;lt;ref name=&amp;quot;paper2&amp;quot;&amp;gt;PMID:10334994&amp;lt;/ref&amp;gt;. &lt;br /&gt;
LovD has of two domains. The &amp;lt;scene name=&#039;Sandbox_Reserved_316/Firsstdomain/1&#039;&amp;gt;first domain&amp;lt;/scene&amp;gt;, which consists of residues 1–92 and 204–413, is a central seven-stranded antiparallel β-sheet flanked by α-helices on either face&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;. The &lt;br /&gt;
&amp;lt;scene name=&#039;Sandbox_Reserved_316/Seconddomainn/1&#039;&amp;gt;second domain&amp;lt;/scene&amp;gt; is smaller, consists of residues 93–203 and is primarily α-helical&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
At the core of the enzyme, there are notable loops peripheral to the active site, both in size and architecture. Upon ligand binding LovD undergoes a conformational change analogous to the closing of a catcher&#039;s mitt by these loops. This ringshaped ridge over the active site with fingers is composed of &amp;lt;scene name=&#039;Sandbox_Reserved_316/5_loops/2&#039;&amp;gt;five loops&amp;lt;/scene&amp;gt;: residues 114–125, 147–173, 243–258, 321–327, and 388–391&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
LovD has &amp;lt;scene name=&#039;Sandbox_Reserved_316/Cysteines/2&#039;&amp;gt;nine cysteines&amp;lt;/scene&amp;gt; at the following positions: C40, C49, C60, C72, C89, C216, C266, C380, and C395&amp;lt;ref name=&amp;quot;paper3&amp;quot;&amp;gt;PMID:18988191&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
==Additional Information==&lt;br /&gt;
&amp;lt;Structure load=&#039;1CI8&#039; size=&#039;300&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;&#039; scene=&#039;Sandbox_Reserved_316/Estb/1&#039;/&amp;gt;&lt;br /&gt;
As simvastatin is an active pharmaceutical ingredient in the cholesterol-lowering drug Zocor®, its efficient synthesis from lovastatin, via LovD is intensely pursued &amp;lt;ref name=&amp;quot;paper4&amp;quot;&amp;gt;PMID:19875080&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
The protein-protein interaction between LovD and the acyl carrier protein domain of LovF facilitates the highly efficient tailoring reaction during LVA biosynthesis &amp;lt;ref name=&amp;quot;paper4&amp;quot;&amp;gt;PMID:&lt;br /&gt;
17113998&amp;lt;/ref&amp;gt;. The α-&#039;&#039;S&#039;&#039;-methylbutyrate side chain is synthesized by the lovastatin diketide synthase (LDKS) LovF and then transferred by LovD regioselectively to the C8 hydroxyl of &amp;lt;scene name=&#039;Sandbox_Reserved_316/Blah/3&#039;&amp;gt;MJA&amp;lt;/scene&amp;gt;&amp;lt;ref name=&amp;quot;paper3&amp;quot;&amp;gt;PMID:18988191&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
Among enzymes that of known structures, &amp;lt;scene name=&#039;Sandbox_Reserved_316/Estb/1&#039;&amp;gt;EstB&amp;lt;/scene&amp;gt; (cephalosporin esterase), is homologous to LovD: 26% sequence identity &amp;lt;ref name=&amp;quot;paper6&amp;quot;&amp;gt;PMID:&lt;br /&gt;
11847270&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
==References==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Eric Ginter</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_316&amp;diff=1224677</id>
		<title>Sandbox Reserved 316</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_316&amp;diff=1224677"/>
		<updated>2011-04-04T01:57:22Z</updated>

		<summary type="html">&lt;p&gt;Eric Ginter: &lt;/p&gt;
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&lt;div&gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Template:Sandbox_Reserved_BCMB307}}&lt;br /&gt;
 &amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
==Introduction==&lt;br /&gt;
[[Image:svs.jpg|300px|left|thumb|]]&#039;&#039;&#039;Simvastatin synthase&#039;&#039;&#039; (LovD) is a 46 kDa acyltransferase found in the lovastatin biosynthetic pathway and catalyzes the final step of lovastatin biosynthesis&amp;lt;ref name=&amp;quot;paper4&amp;quot;&amp;gt;PMID:&lt;br /&gt;
17113998&amp;lt;/ref&amp;gt;. Pictured here is the generated double mutant C40A/C60N (G0), from wild type LovD (Figure 1).&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
This enzyme is isolated from the natural product biosynthetic pathways of [http://en.wikipedia.org/wiki/Aspergillus_terreus &#039;&#039;Aspergillus terreus&#039;&#039;], specifically the polyketide biosynthetic pathway. Simvastatin Synthase  converts the inactive monacolin J acid (MJA) by dimethylbutyryl chloride to yield the protected form of simvastatin (Figure 2), which subsequently undergoes lactonization to yield [http://en.wikipedia.org/wiki/Simvastatin &#039;&#039;simvastatin&#039;&#039;]&amp;lt;ref name=&amp;quot;paper5&amp;quot;&amp;gt;PMID:19875080&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
[[Image:Sim_mja.jpg]] &lt;br /&gt;
&lt;br /&gt;
LovD can also synthesize the blockbuster drug simvastatin using MJA and a synthetic α-dimethylbutyryl thioester&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;.&lt;br /&gt;
==Exploring the structure==&lt;br /&gt;
{{STRUCTURE_3hle |  PDB=3hle  |  SCENE=Sandbox_Reserved_316/Default/1}} &lt;br /&gt;
LovD is a 413-amino acid protein predicted to have an α/β hydrolase fold based on primary sequence analysis&amp;lt;ref name=&amp;quot;paper2&amp;quot;&amp;gt;PMID:10334994&amp;lt;/ref&amp;gt;. &lt;br /&gt;
LovD has of two domains. The &amp;lt;scene name=&#039;Sandbox_Reserved_316/Firsstdomain/1&#039;&amp;gt;first domain&amp;lt;/scene&amp;gt;, which consists of residues 1–92 and 204–413, is a central seven-stranded antiparallel β-sheet flanked by α-helices on either face&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;. The &lt;br /&gt;
&amp;lt;scene name=&#039;Sandbox_Reserved_316/Seconddomainn/1&#039;&amp;gt;second domain&amp;lt;/scene&amp;gt; is smaller, consists of residues 93–203 and is primarily α-helical&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
At the core of the enzyme, there are notable loops peripheral to the active site, both in size and architecture. Upon ligand binding LovD undergoes a conformational change analogous to the closing of a catcher&#039;s mitt by these loops. This ringshaped ridge over the active site with fingers is composed of &amp;lt;scene name=&#039;Sandbox_Reserved_316/5_loops/2&#039;&amp;gt;five loops&amp;lt;/scene&amp;gt;: residues 114–125, 147–173, 243–258, 321–327, and 388–391&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
LovD has &amp;lt;scene name=&#039;Sandbox_Reserved_316/Cysteines/2&#039;&amp;gt;nine cysteines&amp;lt;/scene&amp;gt; at the following positions: C40, C49, C60, C72, C89, C216, C266, C380, and C395&amp;lt;ref name=&amp;quot;paper3&amp;quot;&amp;gt;PMID:18988191&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
==Additional Information==&lt;br /&gt;
&amp;lt;Structure load=&#039;1CI8&#039; size=&#039;300&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;&#039; scene=&#039;Sandbox_Reserved_316/Estb/1&#039;/&amp;gt;&lt;br /&gt;
As simvastatin is an active pharmaceutical ingredient in the cholesterol-lowering drug Zocor®, its efficient synthesis from lovastatin, via LovD is intensely pursued &amp;lt;ref name=&amp;quot;paper4&amp;quot;&amp;gt;PMID:19875080&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
The protein-protein interaction between LovD and the acyl carrier protein domain of LovF facilitates the highly efficient tailoring reaction during LVA biosynthesis &amp;lt;ref name=&amp;quot;paper4&amp;quot;&amp;gt;PMID:&lt;br /&gt;
17113998&amp;lt;/ref&amp;gt;. The α-&#039;&#039;S&#039;&#039;-methylbutyrate side chain is synthesized by the lovastatin diketide synthase (LDKS) LovF and then transferred by LovD regioselectively to the C8 hydroxyl of &amp;lt;scene name=&#039;Sandbox_Reserved_316/Blah/3&#039;&amp;gt;MJA&amp;lt;/scene&amp;gt;&amp;lt;ref name=&amp;quot;paper3&amp;quot;&amp;gt;PMID:18988191&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
Among enzymes that of known structures, &amp;lt;scene name=&#039;Sandbox_Reserved_316/Estb/1&#039;&amp;gt;EstB&amp;lt;/scene&amp;gt; (cephalosporin esterase), is homologous to LovD: 26% sequence identity &amp;lt;ref name=&amp;quot;paper6&amp;quot;&amp;gt;PMID:&lt;br /&gt;
11847270&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
==References==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Eric Ginter</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_316&amp;diff=1224674</id>
		<title>Sandbox Reserved 316</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_316&amp;diff=1224674"/>
		<updated>2011-04-04T01:55:56Z</updated>

		<summary type="html">&lt;p&gt;Eric Ginter: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Template:Sandbox_Reserved_BCMB307}}&lt;br /&gt;
 &amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
==Introduction==&lt;br /&gt;
[[Image:svs.jpg|300px|left|thumb|]]&#039;&#039;&#039;Simvastatin synthase&#039;&#039;&#039; (LovD) is a 46 kDa acyltransferase found in the lovastatin biosynthetic pathway and catalyzes the final step of lovastatin biosynthesis&amp;lt;ref name=&amp;quot;paper4&amp;quot;&amp;gt;PMID:&lt;br /&gt;
17113998&amp;lt;/ref&amp;gt;. Pictured here is the generated double mutant C40A/C60N (G0), from wild type LovD (Figure 1).&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
This enzyme is isolated from the natural product biosynthetic pathways of [http://en.wikipedia.org/wiki/Aspergillus_terreus &#039;&#039;Aspergillus terreus&#039;&#039;], specifically the polyketide biosynthetic pathway. Simvastatin Synthase  converts the inactive monacolin J acid (MJA) by dimethylbutyryl chloride to yield the protected form of simvastatin (Figure 2), which subsequently undergoes lactonization to yield [http://en.wikipedia.org/wiki/Simvastatin &#039;&#039;simvastatin&#039;&#039;]&amp;lt;ref name=&amp;quot;paper5&amp;quot;&amp;gt;PMID:19875080&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
[[Image:Sim_mja.jpg]] &lt;br /&gt;
&lt;br /&gt;
LovD can also synthesize the blockbuster drug simvastatin using MJA and a synthetic α-dimethylbutyryl thioester&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;.&lt;br /&gt;
==Exploring the structure==&lt;br /&gt;
{{STRUCTURE_3hle |  PDB=3hle  |  SCENE=&#039;Sandbox_Reserved_316/Default/1&#039;}} &lt;br /&gt;
LovD is a 413-amino acid protein predicted to have an α/β hydrolase fold based on primary sequence analysis&amp;lt;ref name=&amp;quot;paper2&amp;quot;&amp;gt;PMID:10334994&amp;lt;/ref&amp;gt;. &lt;br /&gt;
LovD has of two domains. The &amp;lt;scene name=&#039;Sandbox_Reserved_316/Firsstdomain/1&#039;&amp;gt;first domain&amp;lt;/scene&amp;gt;, which consists of residues 1–92 and 204–413, is a central seven-stranded antiparallel β-sheet flanked by α-helices on either face&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;. The &lt;br /&gt;
&amp;lt;scene name=&#039;Sandbox_Reserved_316/Seconddomainn/1&#039;&amp;gt;second domain&amp;lt;/scene&amp;gt; is smaller, consists of residues 93–203 and is primarily α-helical&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
At the core of the enzyme, there are notable loops peripheral to the active site, both in size and architecture. Upon ligand binding LovD undergoes a conformational change analogous to the closing of a catcher&#039;s mitt by these loops. This ringshaped ridge over the active site with fingers is composed of &amp;lt;scene name=&#039;Sandbox_Reserved_316/5_loops/2&#039;&amp;gt;five loops&amp;lt;/scene&amp;gt;: residues 114–125, 147–173, 243–258, 321–327, and 388–391&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
LovD has &amp;lt;scene name=&#039;Sandbox_Reserved_316/Cysteines/2&#039;&amp;gt;nine cysteines&amp;lt;/scene&amp;gt; at the following positions: C40, C49, C60, C72, C89, C216, C266, C380, and C395&amp;lt;ref name=&amp;quot;paper3&amp;quot;&amp;gt;PMID:18988191&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
==Additional Information==&lt;br /&gt;
&amp;lt;Structure load=&#039;1CI8&#039; size=&#039;300&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;&#039; scene=&#039;Sandbox_Reserved_316/Estb/1&#039;/&amp;gt;&lt;br /&gt;
As simvastatin is an active pharmaceutical ingredient in the cholesterol-lowering drug Zocor®, its efficient synthesis from lovastatin, via LovD is intensely pursued &amp;lt;ref name=&amp;quot;paper4&amp;quot;&amp;gt;PMID:19875080&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
The protein-protein interaction between LovD and the acyl carrier protein domain of LovF facilitates the highly efficient tailoring reaction during LVA biosynthesis &amp;lt;ref name=&amp;quot;paper4&amp;quot;&amp;gt;PMID:&lt;br /&gt;
17113998&amp;lt;/ref&amp;gt;. The α-&#039;&#039;S&#039;&#039;-methylbutyrate side chain is synthesized by the lovastatin diketide synthase (LDKS) LovF and then transferred by LovD regioselectively to the C8 hydroxyl of &amp;lt;scene name=&#039;Sandbox_Reserved_316/Blah/3&#039;&amp;gt;MJA&amp;lt;/scene&amp;gt;&amp;lt;ref name=&amp;quot;paper3&amp;quot;&amp;gt;PMID:18988191&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
Among enzymes that of known structures, &amp;lt;scene name=&#039;Sandbox_Reserved_316/Estb/1&#039;&amp;gt;EstB&amp;lt;/scene&amp;gt; (cephalosporin esterase), is homologous to LovD: 26% sequence identity &amp;lt;ref name=&amp;quot;paper6&amp;quot;&amp;gt;PMID:&lt;br /&gt;
11847270&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
==References==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Eric Ginter</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Simvastatin_Synthase&amp;diff=1224672</id>
		<title>Simvastatin Synthase</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Simvastatin_Synthase&amp;diff=1224672"/>
		<updated>2011-04-04T01:50:34Z</updated>

		<summary type="html">&lt;p&gt;Eric Ginter: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;==Introduction==&lt;br /&gt;
[[Image:svs.jpg|300px|left|thumb|]]&#039;&#039;&#039;Simvastatin synthase&#039;&#039;&#039; (LovD) is a 46 kDa acyltransferase found in the lovastatin biosynthetic pathway and catalyzes the final step of lovastatin biosynthesis&amp;lt;ref name=&amp;quot;paper4&amp;quot;&amp;gt;PMID:&lt;br /&gt;
17113998&amp;lt;/ref&amp;gt;. Pictured here is the generated double mutant C40A/C60N (G0), from wild type LovD (Figure 1).&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
This enzyme is isolated from the natural product biosynthetic pathways of [http://en.wikipedia.org/wiki/Aspergillus_terreus &#039;&#039;Aspergillus terreus&#039;&#039;], specifically the polyketide biosynthetic pathway. Simvastatin Synthase  converts the inactive monacolin J acid (MJA) by dimethylbutyryl chloride to yield the protected form of simvastatin (Figure 2), which subsequently undergoes lactonization to yield [http://en.wikipedia.org/wiki/Simvastatin &#039;&#039;simvastatin&#039;&#039;]&amp;lt;ref name=&amp;quot;paper5&amp;quot;&amp;gt;PMID:19875080&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
[[Image:Sim_mja.jpg]] &lt;br /&gt;
&lt;br /&gt;
LovD can also synthesize the blockbuster drug simvastatin using MJA and a synthetic α-dimethylbutyryl thioester&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;.&lt;br /&gt;
==Exploring the structure==&lt;br /&gt;
{{STRUCTURE_3hle |  PDB=3hle  |  SCENE=  }} &lt;br /&gt;
LovD is a 413-amino acid protein predicted to have an α/β hydrolase fold based on primary sequence analysis&amp;lt;ref name=&amp;quot;paper2&amp;quot;&amp;gt;PMID:10334994&amp;lt;/ref&amp;gt;. &lt;br /&gt;
LovD has of two domains. The &amp;lt;scene name=&#039;Sandbox_Reserved_316/Firsstdomain/1&#039;&amp;gt;first domain&amp;lt;/scene&amp;gt;, which consists of residues 1–92 and 204–413, is a central seven-stranded antiparallel β-sheet flanked by α-helices on either face&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;. The &lt;br /&gt;
&amp;lt;scene name=&#039;Sandbox_Reserved_316/Seconddomainn/1&#039;&amp;gt;second domain&amp;lt;/scene&amp;gt; is smaller, consists of residues 93–203 and is primarily α-helical&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
At the core of the enzyme, there are notable loops peripheral to the active site, both in size and architecture. Upon ligand binding LovD undergoes a conformational change analogous to the closing of a catcher&#039;s mitt by these loops. This ringshaped ridge over the active site with fingers is composed of &amp;lt;scene name=&#039;Sandbox_Reserved_316/5_loops/2&#039;&amp;gt;five loops&amp;lt;/scene&amp;gt;: residues 114–125, 147–173, 243–258, 321–327, and 388–391&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
LovD has &amp;lt;scene name=&#039;Sandbox_Reserved_316/Cysteines/2&#039;&amp;gt;nine cysteines&amp;lt;/scene&amp;gt; at the following positions: C40, C49, C60, C72, C89, C216, C266, C380, and C395&amp;lt;ref name=&amp;quot;paper3&amp;quot;&amp;gt;PMID:18988191&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
==Additional Information==&lt;br /&gt;
&amp;lt;Structure load=&#039;1CI8&#039; size=&#039;300&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;&#039; scene=&#039;Sandbox_Reserved_316/Estb/1&#039;/&amp;gt;&lt;br /&gt;
As simvastatin is an active pharmaceutical ingredient in the cholesterol-lowering drug Zocor®, its efficient synthesis from lovastatin, via LovD is intensely pursued &amp;lt;ref name=&amp;quot;paper4&amp;quot;&amp;gt;PMID:19875080&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
The protein-protein interaction between LovD and the acyl carrier protein domain of LovF facilitates the highly efficient tailoring reaction during LVA biosynthesis &amp;lt;ref name=&amp;quot;paper4&amp;quot;&amp;gt;PMID:&lt;br /&gt;
17113998&amp;lt;/ref&amp;gt;. The α-&#039;&#039;S&#039;&#039;-methylbutyrate side chain is synthesized by the lovastatin diketide synthase (LDKS) LovF and then transferred by LovD regioselectively to the C8 hydroxyl of &amp;lt;scene name=&#039;Sandbox_Reserved_316/Blah/3&#039;&amp;gt;MJA&amp;lt;/scene&amp;gt;&amp;lt;ref name=&amp;quot;paper3&amp;quot;&amp;gt;PMID:18988191&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
Among enzymes that of known structures, &amp;lt;scene name=&#039;Sandbox_Reserved_316/Estb/1&#039;&amp;gt;EstB&amp;lt;/scene&amp;gt; (cephalosporin esterase), is homologous to LovD: 26% sequence identity &amp;lt;ref name=&amp;quot;paper6&amp;quot;&amp;gt;PMID:&lt;br /&gt;
11847270&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
==References==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Eric Ginter</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_316&amp;diff=1224667</id>
		<title>Sandbox Reserved 316</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_316&amp;diff=1224667"/>
		<updated>2011-04-04T01:48:22Z</updated>

		<summary type="html">&lt;p&gt;Eric Ginter: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Template:Sandbox_Reserved_BCMB307}}&lt;br /&gt;
 &amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
==Introduction==&lt;br /&gt;
[[Image:svs.jpg|300px|left|thumb|]]&#039;&#039;&#039;Simvastatin synthase&#039;&#039;&#039; (LovD) is a 46 kDa acyltransferase found in the lovastatin biosynthetic pathway and catalyzes the final step of lovastatin biosynthesis&amp;lt;ref name=&amp;quot;paper4&amp;quot;&amp;gt;PMID:&lt;br /&gt;
17113998&amp;lt;/ref&amp;gt;. Pictured here is the generated double mutant C40A/C60N (G0), from wild type LovD (Figure 1).&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
This enzyme is isolated from the natural product biosynthetic pathways of [http://en.wikipedia.org/wiki/Aspergillus_terreus &#039;&#039;Aspergillus terreus&#039;&#039;], specifically the polyketide biosynthetic pathway. Simvastatin Synthase  converts the inactive monacolin J acid (MJA) by dimethylbutyryl chloride to yield the protected form of simvastatin (Figure 2), which subsequently undergoes lactonization to yield [http://en.wikipedia.org/wiki/Simvastatin &#039;&#039;simvastatin&#039;&#039;]&amp;lt;ref name=&amp;quot;paper5&amp;quot;&amp;gt;PMID:19875080&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
[[Image:Sim_mja.jpg]] &lt;br /&gt;
&lt;br /&gt;
LovD can also synthesize the blockbuster drug simvastatin using MJA and a synthetic α-dimethylbutyryl thioester&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;.&lt;br /&gt;
==Exploring the structure==&lt;br /&gt;
{{STRUCTURE_3hle |  PDB=3hle  |  SCENE=  }} &lt;br /&gt;
LovD is a 413-amino acid protein predicted to have an α/β hydrolase fold based on primary sequence analysis&amp;lt;ref name=&amp;quot;paper2&amp;quot;&amp;gt;PMID:10334994&amp;lt;/ref&amp;gt;. &lt;br /&gt;
LovD has of two domains. The &amp;lt;scene name=&#039;Sandbox_Reserved_316/Firsstdomain/1&#039;&amp;gt;first domain&amp;lt;/scene&amp;gt;, which consists of residues 1–92 and 204–413, is a central seven-stranded antiparallel β-sheet flanked by α-helices on either face&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;. The &lt;br /&gt;
&amp;lt;scene name=&#039;Sandbox_Reserved_316/Seconddomainn/1&#039;&amp;gt;second domain&amp;lt;/scene&amp;gt; is smaller, consists of residues 93–203 and is primarily α-helical&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
At the core of the enzyme, there are notable loops peripheral to the active site, both in size and architecture. Upon ligand binding LovD undergoes a conformational change analogous to the closing of a catcher&#039;s mitt by these loops. This ringshaped ridge over the active site with fingers is composed of &amp;lt;scene name=&#039;Sandbox_Reserved_316/5_loops/2&#039;&amp;gt;five loops&amp;lt;/scene&amp;gt;: residues 114–125, 147–173, 243–258, 321–327, and 388–391&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
LovD has &amp;lt;scene name=&#039;Sandbox_Reserved_316/Cysteines/2&#039;&amp;gt;nine cysteines&amp;lt;/scene&amp;gt; at the following positions: C40, C49, C60, C72, C89, C216, C266, C380, and C395&amp;lt;ref name=&amp;quot;paper3&amp;quot;&amp;gt;PMID:18988191&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
==Additional Information==&lt;br /&gt;
&amp;lt;Structure load=&#039;1CI8&#039; size=&#039;300&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;&#039; scene=&#039;Sandbox_Reserved_316/Estb/1&#039;/&amp;gt;&lt;br /&gt;
As simvastatin is an active pharmaceutical ingredient in the cholesterol-lowering drug Zocor®, its efficient synthesis from lovastatin, via LovD is intensely pursued &amp;lt;ref name=&amp;quot;paper4&amp;quot;&amp;gt;PMID:19875080&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
The protein-protein interaction between LovD and the acyl carrier protein domain of LovF facilitates the highly efficient tailoring reaction during LVA biosynthesis &amp;lt;ref name=&amp;quot;paper4&amp;quot;&amp;gt;PMID:&lt;br /&gt;
17113998&amp;lt;/ref&amp;gt;. The α-&#039;&#039;S&#039;&#039;-methylbutyrate side chain is synthesized by the lovastatin diketide synthase (LDKS) LovF and then transferred by LovD regioselectively to the C8 hydroxyl of &amp;lt;scene name=&#039;Sandbox_Reserved_316/Blah/3&#039;&amp;gt;MJA&amp;lt;/scene&amp;gt;&amp;lt;ref name=&amp;quot;paper3&amp;quot;&amp;gt;PMID:18988191&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
Among enzymes that of known structures, &amp;lt;scene name=&#039;Sandbox_Reserved_316/Estb/1&#039;&amp;gt;EstB&amp;lt;/scene&amp;gt; (cephalosporin esterase), is homologous to LovD: 26% sequence identity &amp;lt;ref name=&amp;quot;paper6&amp;quot;&amp;gt;PMID:&lt;br /&gt;
11847270&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
==References==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Eric Ginter</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_316&amp;diff=1224639</id>
		<title>Sandbox Reserved 316</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_316&amp;diff=1224639"/>
		<updated>2011-04-04T01:31:55Z</updated>

		<summary type="html">&lt;p&gt;Eric Ginter: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Template:Sandbox_Reserved_BCMB307}}&lt;br /&gt;
 &amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
==Introduction==&lt;br /&gt;
[[Image:svs.jpg|300px|left|thumb|]]&#039;&#039;&#039;Simvastatin synthase&#039;&#039;&#039; (LovD) is a 46 kDa acyltransferase found in the lovastatin biosynthetic pathway and catalyzes the final step of lovastatin biosynthesis&amp;lt;ref name=&amp;quot;paper4&amp;quot;&amp;gt;PMID:&lt;br /&gt;
17113998&amp;lt;/ref&amp;gt;. Pictured here is the generated double mutant C40A/C60N (G0), from wild type LovD (Figure 1).&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
This enzyme is isolated from the natural product biosynthetic pathways of [http://en.wikipedia.org/wiki/Aspergillus_terreus &#039;&#039;Aspergillus terreus&#039;&#039;], specifically the polyketide biosynthetic pathway. Simvastatin Synthase  converts the inactive monacolin J acid (MJA) by dimethylbutyryl chloride to yield the protected form of simvastatin (Figure 2), which subsequently undergoes lactonization to yield [http://en.wikipedia.org/wiki/Simvastatin &#039;&#039;simvastatin&#039;&#039;]&amp;lt;ref name=&amp;quot;paper5&amp;quot;&amp;gt;PMID:19875080&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
[[Image:Sim_mja.jpg]] &lt;br /&gt;
&lt;br /&gt;
LovD can also synthesize the blockbuster drug simvastatin using MJA and a synthetic α-dimethylbutyryl thioester&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;.&lt;br /&gt;
==Exploring the structure==&lt;br /&gt;
{{STRUCTURE_3hle |  PDB=3hle  |  SCENE=  }} &lt;br /&gt;
LovD is a 413-amino acid protein predicted to have an α/β hydrolase fold based on primary sequence analysis&amp;lt;ref name=&amp;quot;paper2&amp;quot;&amp;gt;PMID:10334994&amp;lt;/ref&amp;gt;. &lt;br /&gt;
LovD has of two domains. The &amp;lt;scene name=&#039;Sandbox_Reserved_316/First_domain_1/1&#039;&amp;gt;first domain&amp;lt;/scene&amp;gt;, which consists of residues 1–92 and 204–413, is a central seven-stranded antiparallel β-sheet flanked by α-helices on either face&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;. The &amp;lt;scene name=&#039;Sandbox_Reserved_316/Second_domain_1/1&#039;&amp;gt;second domain&amp;lt;/scene&amp;gt; is smaller, consists of residues 93–203 and is primarily α-helical&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
At the core of the enzyme, there are notable loops peripheral to the active site, both in size and architecture. Upon ligand binding LovD undergoes a conformational change analogous to the closing of a catcher&#039;s mitt by these loops. This ringshaped ridge over the active site with fingers is composed of &amp;lt;scene name=&#039;Sandbox_Reserved_316/5_loops/2&#039;&amp;gt;five loops&amp;lt;/scene&amp;gt;: residues 114–125, 147–173, 243–258, 321–327, and 388–391&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
LovD has &amp;lt;scene name=&#039;Sandbox_Reserved_316/Cysteines/2&#039;&amp;gt;nine cysteines&amp;lt;/scene&amp;gt; at the following positions: C40, C49, C60, C72, C89, C216, C266, C380, and C395&amp;lt;ref name=&amp;quot;paper3&amp;quot;&amp;gt;PMID:18988191&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
==Additional Information==&lt;br /&gt;
&amp;lt;Structure load=&#039;1CI8&#039; size=&#039;300&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;&#039; scene=&#039;Sandbox_Reserved_316/Estb/1&#039;/&amp;gt;&lt;br /&gt;
As simvastatin is an active pharmaceutical ingredient in the cholesterol-lowering drug Zocor®, its efficient synthesis from lovastatin, via LovD is intensely pursued &amp;lt;ref name=&amp;quot;paper4&amp;quot;&amp;gt;PMID:19875080&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
The protein-protein interaction between LovD and the acyl carrier protein domain of LovF facilitates the highly efficient tailoring reaction during LVA biosynthesis &amp;lt;ref name=&amp;quot;paper4&amp;quot;&amp;gt;PMID:&lt;br /&gt;
17113998&amp;lt;/ref&amp;gt;. The α-&#039;&#039;S&#039;&#039;-methylbutyrate side chain is synthesized by the lovastatin diketide synthase (LDKS) LovF and then transferred by LovD regioselectively to the C8 hydroxyl of &amp;lt;scene name=&#039;Sandbox_Reserved_316/Blah/3&#039;&amp;gt;MJA&amp;lt;/scene&amp;gt;&amp;lt;ref name=&amp;quot;paper3&amp;quot;&amp;gt;PMID:18988191&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
Among enzymes that of known structures, &amp;lt;scene name=&#039;Sandbox_Reserved_316/Estb/1&#039;&amp;gt;EstB&amp;lt;/scene&amp;gt; (cephalosporin esterase), is homologous to LovD: 26% sequence identity &amp;lt;ref name=&amp;quot;paper6&amp;quot;&amp;gt;PMID:&lt;br /&gt;
11847270&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
==References==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Eric Ginter</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_316&amp;diff=1224637</id>
		<title>Sandbox Reserved 316</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_316&amp;diff=1224637"/>
		<updated>2011-04-04T01:30:31Z</updated>

		<summary type="html">&lt;p&gt;Eric Ginter: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Template:Sandbox_Reserved_BCMB307}}&lt;br /&gt;
 &amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
==Introduction==&lt;br /&gt;
[[Image:svs.jpg|300px|left|thumb|]]&#039;&#039;&#039;Simvastatin synthase&#039;&#039;&#039; (LovD) is a 46 kDa acyltransferase found in the lovastatin biosynthetic pathway and catalyzes the final step of lovastatin biosynthesis&amp;lt;ref name=&amp;quot;paper4&amp;quot;&amp;gt;PMID:&lt;br /&gt;
17113998&amp;lt;/ref&amp;gt;. Pictured here is the generated double mutant C40A/C60N (G0), from wild type LovD (Figure 1).&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
This enzyme is isolated from the natural product biosynthetic pathways of [http://en.wikipedia.org/wiki/Aspergillus_terreus &#039;&#039;Aspergillus terreus&#039;&#039;], specifically the polyketide biosynthetic pathway. Simvastatin Synthase  converts the inactive monacolin J acid (&amp;lt;scene name=&#039;Sandbox_Reserved_316/Blah/3&#039;&amp;gt;MJA&amp;lt;/scene&amp;gt;) by dimethylbutyryl chloride to yield the protected form of simvastatin (Figure 2), which subsequently undergoes lactonization to yield [http://en.wikipedia.org/wiki/Simvastatin &#039;&#039;simvastatin&#039;&#039;]&amp;lt;ref name=&amp;quot;paper5&amp;quot;&amp;gt;PMID:19875080&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
[[Image:Sim_mja.jpg]] &lt;br /&gt;
&lt;br /&gt;
LovD can also synthesize the blockbuster drug simvastatin using MJA and a synthetic α-dimethylbutyryl thioester&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;.&lt;br /&gt;
==Exploring the structure==&lt;br /&gt;
{{STRUCTURE_3hle |  PDB=3hle  |  SCENE=  }} &lt;br /&gt;
LovD is a 413-amino acid protein predicted to have an α/β hydrolase fold based on primary sequence analysis&amp;lt;ref name=&amp;quot;paper2&amp;quot;&amp;gt;PMID:10334994&amp;lt;/ref&amp;gt;. &lt;br /&gt;
LovD has of two domains. The &amp;lt;scene name=&#039;Sandbox_Reserved_316/First_domain_1/1&#039;&amp;gt;first domain&amp;lt;/scene&amp;gt;, which consists of residues 1–92 and 204–413, is a central seven-stranded antiparallel β-sheet flanked by α-helices on either face&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;. The &amp;lt;scene name=&#039;Sandbox_Reserved_316/Second_domain_1/1&#039;&amp;gt;second domain&amp;lt;/scene&amp;gt; is smaller, consists of residues 93–203 and is primarily α-helical&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
At the core of the enzyme, there are notable loops peripheral to the active site, both in size and architecture. Upon ligand binding LovD undergoes a conformational change analogous to the closing of a catcher&#039;s mitt by these loops. This ringshaped ridge over the active site with fingers is composed of &amp;lt;scene name=&#039;Sandbox_Reserved_316/5_loops/2&#039;&amp;gt;five loops&amp;lt;/scene&amp;gt;: residues 114–125, 147–173, 243–258, 321–327, and 388–391&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
LovD has &amp;lt;scene name=&#039;Sandbox_Reserved_316/Cysteines/2&#039;&amp;gt;nine cysteines&amp;lt;/scene&amp;gt; at the following positions: C40, C49, C60, C72, C89, C216, C266, C380, and C395&amp;lt;ref name=&amp;quot;paper3&amp;quot;&amp;gt;PMID:18988191&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
==Additional Information==&lt;br /&gt;
&amp;lt;Structure load=&#039;1CI8&#039; size=&#039;300&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;&#039; scene=&#039;Sandbox_Reserved_316/Estb/1&#039;/&amp;gt;&lt;br /&gt;
As simvastatin is an active pharmaceutical ingredient in the cholesterol-lowering drug Zocor®, its efficient synthesis from lovastatin, via LovD is intensely pursued &amp;lt;ref name=&amp;quot;paper4&amp;quot;&amp;gt;PMID:19875080&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
The protein-protein interaction between LovD and the acyl carrier protein domain of LovF facilitates the highly efficient tailoring reaction during LVA biosynthesis &amp;lt;ref name=&amp;quot;paper4&amp;quot;&amp;gt;PMID:&lt;br /&gt;
17113998&amp;lt;/ref&amp;gt;. The α-&#039;&#039;S&#039;&#039;-methylbutyrate side chain is synthesized by the lovastatin diketide synthase (LDKS) LovF and then transferred by LovD regioselectively to the C8 hydroxyl of MJA&amp;lt;ref name=&amp;quot;paper3&amp;quot;&amp;gt;PMID:18988191&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
Among enzymes that of known structures, &amp;lt;scene name=&#039;Sandbox_Reserved_316/Estb/1&#039;&amp;gt;EstB&amp;lt;/scene&amp;gt; (cephalosporin esterase), is homologous to LovD: 26% sequence identity &amp;lt;ref name=&amp;quot;paper6&amp;quot;&amp;gt;PMID:&lt;br /&gt;
11847270&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
==References==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Eric Ginter</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_316&amp;diff=1224634</id>
		<title>Sandbox Reserved 316</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_316&amp;diff=1224634"/>
		<updated>2011-04-04T01:27:25Z</updated>

		<summary type="html">&lt;p&gt;Eric Ginter: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Template:Sandbox_Reserved_BCMB307}}&lt;br /&gt;
 &amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
==Introduction==&lt;br /&gt;
[[Image:svs.jpg|300px|left|thumb|]]&#039;&#039;&#039;Simvastatin synthase&#039;&#039;&#039; (LovD) is a 46 kDa acyltransferase found in the lovastatin biosynthetic pathway and catalyzes the final step of lovastatin biosynthesis&amp;lt;ref name=&amp;quot;paper4&amp;quot;&amp;gt;PMID:&lt;br /&gt;
17113998&amp;lt;/ref&amp;gt;. Pictured here is the generated double mutant C40A/C60N (G0), from wild type LovD (Figure 1).&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
This enzyme is isolated from the natural product biosynthetic pathways of [http://en.wikipedia.org/wiki/Aspergillus_terreus &#039;&#039;Aspergillus terreus&#039;&#039;], specifically the polyketide biosynthetic pathway. Simvastatin Synthase  converts the inactive monacolin J acid (&amp;lt;scene name=&#039;Sandbox_Reserved_316/Blah/3&#039;&amp;gt;MJA&amp;lt;/scene&amp;gt;) by dimethylbutyryl chloride to yield the protected form of simvastatin (Figure 2), which subsequently undergoes lactonization to yield [http://en.wikipedia.org/wiki/Simvastatin &#039;&#039;simvastatin&#039;&#039;]&amp;lt;ref name=&amp;quot;paper5&amp;quot;&amp;gt;PMID:19875080&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
[[Image:Sim_mja.jpg]] &lt;br /&gt;
&lt;br /&gt;
LovD can also synthesize the blockbuster drug simvastatin using MJA and a synthetic α-dimethylbutyryl thioester&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;.&lt;br /&gt;
==Exploring the structure==&lt;br /&gt;
{{STRUCTURE_3hle |  PDB=3hle  |  SCENE=  }} &lt;br /&gt;
LovD is a 413-amino acid protein predicted to have an α/β hydrolase fold based on primary sequence analysis&amp;lt;ref name=&amp;quot;paper2&amp;quot;&amp;gt;PMID:10334994&amp;lt;/ref&amp;gt;. &lt;br /&gt;
LovD has of two domains. The &amp;lt;scene name=&#039;Sandbox_Reserved_316/First_domain_1/1&#039;&amp;gt;first domain&amp;lt;/scene&amp;gt;, which consists of residues 1–92 and 204–413, is a central seven-stranded antiparallel β-sheet flanked by α-helices on either face&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;. The &amp;lt;scene name=&#039;Sandbox_Reserved_316/Second_domain_1/1&#039;&amp;gt;second domain&amp;lt;/scene&amp;gt; is smaller, consists of residues 93–203 and is primarily α-helical&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
At the core of the enzyme, there are notable loops peripheral to the active site, both in size and architecture. Upon ligand binding LovD undergoes a conformational change analogous to the closing of a catcher&#039;s mitt by these loops. This ringshaped ridge over the active site with fingers is composed of &amp;lt;scene name=&#039;Sandbox_Reserved_316/5_loops/2&#039;&amp;gt;five loops&amp;lt;/scene&amp;gt;: residues 114–125, 147–173, 243–258, 321–327, and 388–391&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
LovD has &amp;lt;scene name=&#039;Sandbox_Reserved_316/Cysteines/2&#039;&amp;gt;nine cysteines&amp;lt;/scene&amp;gt; at the following positions: C40, C49, C60, C72, C89, C216, C266, C380, and C395&amp;lt;ref name=&amp;quot;paper3&amp;quot;&amp;gt;PMID:18988191&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
==Additional Information==&lt;br /&gt;
&amp;lt;Structure load=&#039;1CI8&#039; size=&#039;300&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;&#039; scene=&#039;Sandbox_Reserved_316/Estb/1&#039;/&amp;gt;&lt;br /&gt;
As simvastatin is an active pharmaceutical ingredient in the cholesterol-lowering drug Zocor®, its efficient synthesis from lovastatin, via LovD is intensely pursued &amp;lt;ref name=&amp;quot;paper4&amp;quot;&amp;gt;PMID:19875080&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
The protein-protein interaction between LovD and the acyl carrier protein domain of LovF facilitates the highly efficient tailoring reaction during LVA biosynthesis &amp;lt;ref name=&amp;quot;paper4&amp;quot;&amp;gt;PMID:&lt;br /&gt;
17113998&amp;lt;/ref&amp;gt;. The α-&#039;&#039;S&#039;&#039;-methylbutyrate side chain is synthesized by the lovastatin diketide synthase (LDKS) LovF and then transferred by LovD regioselectively to the C8 hydroxyl of MJA&amp;lt;ref name=&amp;quot;paper3&amp;quot;&amp;gt;PMID:18988191&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
Among enzymes that of known structures, EstB (cephalosporin esterase), is homologous to LovD: 26% sequence identity &amp;lt;ref name=&amp;quot;paper6&amp;quot;&amp;gt;PMID:&lt;br /&gt;
11847270&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
==References==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Eric Ginter</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_316&amp;diff=1224632</id>
		<title>Sandbox Reserved 316</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_316&amp;diff=1224632"/>
		<updated>2011-04-04T01:25:32Z</updated>

		<summary type="html">&lt;p&gt;Eric Ginter: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Template:Sandbox_Reserved_BCMB307}}&lt;br /&gt;
 &amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
==Introduction==&lt;br /&gt;
[[Image:svs.jpg|300px|left|thumb|]]&#039;&#039;&#039;Simvastatin synthase&#039;&#039;&#039; (LovD) is a 46 kDa acyltransferase found in the lovastatin biosynthetic pathway and catalyzes the final step of lovastatin biosynthesis&amp;lt;ref name=&amp;quot;paper4&amp;quot;&amp;gt;PMID:&lt;br /&gt;
17113998&amp;lt;/ref&amp;gt;. Pictured here is the generated double mutant C40A/C60N (G0), from wild type LovD (Figure 1).&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
This enzyme is isolated from the natural product biosynthetic pathways of [http://en.wikipedia.org/wiki/Aspergillus_terreus &#039;&#039;Aspergillus terreus&#039;&#039;], specifically the polyketide biosynthetic pathway. Simvastatin Synthase  converts the inactive monacolin J acid (&amp;lt;scene name=&#039;Sandbox_Reserved_316/Blah/3&#039;&amp;gt;MJA&amp;lt;/scene&amp;gt;) by dimethylbutyryl chloride to yield the protected form of simvastatin (Figure 2), which subsequently undergoes lactonization to yield simvastatin&amp;lt;ref name=&amp;quot;paper5&amp;quot;&amp;gt;PMID:19875080&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
[[Image:Sim_mja.jpg]]&lt;br /&gt;
&lt;br /&gt;
LovD can also synthesize the blockbuster drug simvastatin using MJA and a synthetic α-dimethylbutyryl thioester&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;.&lt;br /&gt;
==Exploring the structure==&lt;br /&gt;
{{STRUCTURE_3hle |  PDB=3hle  |  SCENE=  }} &lt;br /&gt;
LovD is a 413-amino acid protein predicted to have an α/β hydrolase fold based on primary sequence analysis&amp;lt;ref name=&amp;quot;paper2&amp;quot;&amp;gt;PMID:10334994&amp;lt;/ref&amp;gt;. &lt;br /&gt;
LovD has of two domains. The &amp;lt;scene name=&#039;Sandbox_Reserved_316/First_domain_1/1&#039;&amp;gt;first domain&amp;lt;/scene&amp;gt;, which consists of residues 1–92 and 204–413, is a central seven-stranded antiparallel β-sheet flanked by α-helices on either face&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;. The &amp;lt;scene name=&#039;Sandbox_Reserved_316/Second_domain_1/1&#039;&amp;gt;second domain&amp;lt;/scene&amp;gt; is smaller, consists of residues 93–203 and is primarily α-helical&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
At the core of the enzyme, there are notable loops peripheral to the active site, both in size and architecture. Upon ligand binding LovD undergoes a conformational change analogous to the closing of a catcher&#039;s mitt by these loops. This ringshaped ridge over the active site with fingers is composed of &amp;lt;scene name=&#039;Sandbox_Reserved_316/5_loops/2&#039;&amp;gt;five loops&amp;lt;/scene&amp;gt;: residues 114–125, 147–173, 243–258, 321–327, and 388–391&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
LovD has &amp;lt;scene name=&#039;Sandbox_Reserved_316/Cysteines/2&#039;&amp;gt;nine cysteines&amp;lt;/scene&amp;gt; at the following positions: C40, C49, C60, C72, C89, C216, C266, C380, and C395&amp;lt;ref name=&amp;quot;paper3&amp;quot;&amp;gt;PMID:18988191&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
==Additional Information==&lt;br /&gt;
&amp;lt;Structure load=&#039;1CI8&#039; size=&#039;300&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;&#039; scene=&#039;Sandbox_Reserved_316/Estb/1&#039;/&amp;gt;&lt;br /&gt;
As simvastatin is an active pharmaceutical ingredient in the cholesterol-lowering drug Zocor®, its efficient synthesis from lovastatin, via LovD is intensely pursued &amp;lt;ref name=&amp;quot;paper4&amp;quot;&amp;gt;PMID:19875080&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
The protein-protein interaction between LovD and the acyl carrier protein domain of LovF facilitates the highly efficient tailoring reaction during LVA biosynthesis &amp;lt;ref name=&amp;quot;paper4&amp;quot;&amp;gt;PMID:&lt;br /&gt;
17113998&amp;lt;/ref&amp;gt;. The α-&#039;&#039;S&#039;&#039;-methylbutyrate side chain is synthesized by the lovastatin diketide synthase (LDKS) LovF and then transferred by LovD regioselectively to the C8 hydroxyl of MJA&amp;lt;ref name=&amp;quot;paper3&amp;quot;&amp;gt;PMID:18988191&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
Among enzymes that of known structures, EstB (cephalosporin esterase), is homologous to LovD: 26% sequence identity &amp;lt;ref name=&amp;quot;paper6&amp;quot;&amp;gt;PMID:&lt;br /&gt;
11847270&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
==References==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Eric Ginter</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_316&amp;diff=1224630</id>
		<title>Sandbox Reserved 316</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_316&amp;diff=1224630"/>
		<updated>2011-04-04T01:24:56Z</updated>

		<summary type="html">&lt;p&gt;Eric Ginter: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Template:Sandbox_Reserved_BCMB307}}&lt;br /&gt;
 &amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
==Introduction==&lt;br /&gt;
[[Image:svs.jpg|300px|left|thumb|]]&#039;&#039;&#039;Simvastatin synthase&#039;&#039;&#039; (LovD) is a 46 kDa acyltransferase found in the lovastatin biosynthetic pathway and catalyzes the final step of lovastatin biosynthesis&amp;lt;ref name=&amp;quot;paper4&amp;quot;&amp;gt;PMID:&lt;br /&gt;
17113998&amp;lt;/ref&amp;gt;. Pictured here is the generated double mutant C40A/C60N (G0), from wild type LovD (Figure 1).&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
This enzyme is isolated from the natural product biosynthetic pathways of [http://en.wikipedia.org/wiki/Aspergillus_terreus &#039;&#039;Aspergillus terreus&#039;&#039;], specifically the polyketide biosynthetic pathway. Simvastatin Synthase  converts the inactive monacolin J acid (&amp;lt;scene name=&#039;Sandbox_Reserved_316/Blah/3&#039;&amp;gt;MJA&amp;lt;/scene&amp;gt;) by dimethylbutyryl chloride to yield the protected form of simvastatin (Figure 2), which subsequently undergoes lactonization to yield simvastatin&amp;lt;ref name=&amp;quot;paper5&amp;quot;&amp;gt;PMID:19875080&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
[[Image:Sim_mja.jpg]]&lt;br /&gt;
&lt;br /&gt;
LovD can also synthesize the blockbuster drug simvastatin using MJA and a synthetic α-dimethylbutyryl thioester&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;.&lt;br /&gt;
==Exploring the structure==&lt;br /&gt;
{{STRUCTURE_3hle |  PDB=3hle  |  SCENE=  }} &lt;br /&gt;
LovD is a 413-amino acid protein predicted to have an α/β hydrolase fold based on primary sequence analysis&amp;lt;ref name=&amp;quot;paper2&amp;quot;&amp;gt;PMID:10334994&amp;lt;/ref&amp;gt;. &lt;br /&gt;
LovD has of two domains. The &amp;lt;scene name=&#039;Sandbox_Reserved_316/First_domain_1/1&#039;&amp;gt;first domain&amp;lt;/scene&amp;gt;, which consists of residues 1–92 and 204–413, is a central seven-stranded antiparallel β-sheet flanked by α-helices on either face&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;. The &amp;lt;scene name=&#039;Sandbox_Reserved_316/Second_domain_1/1&#039;&amp;gt;second domain&amp;lt;/scene&amp;gt; is smaller, consists of residues 93–203 and is primarily α-helical&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
At the core of the enzyme, there are notable loops peripheral to the active site, both in size and architecture. Upon ligand binding LovD undergoes a conformational change analogous to the closing of a catcher&#039;s mitt by these loops. This ringshaped ridge over the active site with fingers is composed of &amp;lt;scene name=&#039;Sandbox_Reserved_316/5_loops/2&#039;&amp;gt;five loops&amp;lt;/scene&amp;gt;: residues 114–125, 147–173, 243–258, 321–327, and 388–391&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
LovD has &amp;lt;scene name=&#039;Sandbox_Reserved_316/Cysteines/2&#039;&amp;gt;nine cysteines&amp;lt;/scene&amp;gt; at the following positions: C40, C49, C60, C72, C89, C216, C266, C380, and C395&amp;lt;ref name=&amp;quot;paper3&amp;quot;&amp;gt;PMID:18988191&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
==Additional Information==&lt;br /&gt;
&amp;lt;Structure load=&#039;1CI8&#039; size=&#039;300&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;&#039; scene=&#039;Sandbox_Reserved_316/Estb/1&#039;/&amp;gt;&lt;br /&gt;
As simvastatin is an active pharmaceutical ingredient in the cholesterol-lowering drug Zocor®, its efficient synthesis from lovastatin, via LovD is intensely pursued &amp;lt;ref name=&amp;quot;paper4&amp;quot;&amp;gt;PMID:19875080&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
The protein-protein interaction between LovD and the acyl carrier protein domain of LovF facilitates the highly efficient tailoring reaction during LVA biosynthesis &amp;lt;ref name=&amp;quot;paper4&amp;quot;&amp;gt;PMID:&lt;br /&gt;
17113998&amp;lt;/ref&amp;gt;. The α-&amp;quot;&amp;quot;S&amp;quot;&amp;quot;-methylbutyrate side chain is synthesized by the lovastatin diketide synthase (LDKS) LovF and then transferred by LovD regioselectively to the C8 hydroxyl of MJA&amp;lt;ref name=&amp;quot;paper3&amp;quot;&amp;gt;PMID:18988191&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
Among enzymes that of known structures, EstB (cephalosporin esterase), is homologous to LovD: 26% sequence identity &amp;lt;ref name=&amp;quot;paper6&amp;quot;&amp;gt;PMID:&lt;br /&gt;
11847270&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
==References==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Eric Ginter</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_316&amp;diff=1224627</id>
		<title>Sandbox Reserved 316</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_316&amp;diff=1224627"/>
		<updated>2011-04-04T01:23:10Z</updated>

		<summary type="html">&lt;p&gt;Eric Ginter: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Template:Sandbox_Reserved_BCMB307}}&lt;br /&gt;
 &amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
==Introduction==&lt;br /&gt;
[[Image:svs.jpg|300px|left|thumb|]]&#039;&#039;&#039;Simvastatin synthase&#039;&#039;&#039; (LovD) is a 46 kDa acyltransferase found in the lovastatin biosynthetic pathway and catalyzes the final step of lovastatin biosynthesis&amp;lt;ref name=&amp;quot;paper4&amp;quot;&amp;gt;PMID:&lt;br /&gt;
17113998&amp;lt;/ref&amp;gt;. Pictured here is the generated double mutant C40A/C60N (G0), from wild type LovD (Figure 1).&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
This enzyme is isolated from the natural product biosynthetic pathways of [http://en.wikipedia.org/wiki/Aspergillus_terreus &#039;&#039;Aspergillus terreus&#039;&#039;], specifically the polyketide biosynthetic pathway. Simvastatin Synthase  converts the inactive monacolin J acid (&amp;lt;scene name=&#039;Sandbox_Reserved_316/Blah/3&#039;&amp;gt;MJA&amp;lt;/scene&amp;gt;) by dimethylbutyryl chloride to yield the protected form of simvastatin (Figure 2), which subsequently undergoes lactonization to yield simvastatin&amp;lt;ref name=&amp;quot;paper5&amp;quot;&amp;gt;PMID:19875080&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
[[Image:Sim_mja.jpg]]&lt;br /&gt;
&lt;br /&gt;
LovD can also synthesize the blockbuster drug simvastatin using MJA and a synthetic α-dimethylbutyryl thioester&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;.&lt;br /&gt;
==Exploring the structure==&lt;br /&gt;
{{STRUCTURE_3hle |  PDB=3hle  |  SCENE=  }} &lt;br /&gt;
LovD is a 413-amino acid protein predicted to have an α/β hydrolase fold based on primary sequence analysis&amp;lt;ref name=&amp;quot;paper2&amp;quot;&amp;gt;PMID:10334994&amp;lt;/ref&amp;gt;. &lt;br /&gt;
LovD has of two domains. The &amp;lt;scene name=&#039;Sandbox_Reserved_316/First_domain_1/1&#039;&amp;gt;first domain&amp;lt;/scene&amp;gt;, which consists of residues 1–92 and 204–413, is a central seven-stranded antiparallel β-sheet flanked by α-helices on either face&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;. The &amp;lt;scene name=&#039;Sandbox_Reserved_316/Second_domain_1/1&#039;&amp;gt;second domain&amp;lt;/scene&amp;gt; is smaller, consists of residues 93–203 and is primarily α-helical&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
At the core of the enzyme, there are notable loops peripheral to the active site, both in size and architecture. Upon ligand binding LovD undergoes a conformational change analogous to the closing of a catcher&#039;s mitt by these loops. This ringshaped ridge over the active site with fingers is composed of &amp;lt;scene name=&#039;Sandbox_Reserved_316/5_loops/2&#039;&amp;gt;five loops&amp;lt;/scene&amp;gt;: residues 114–125, 147–173, 243–258, 321–327, and 388–391&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
LovD has &amp;lt;scene name=&#039;Sandbox_Reserved_316/Cysteines/2&#039;&amp;gt;nine cysteines&amp;lt;/scene&amp;gt; at the following positions: C40, C49, C60, C72, C89, C216, C266, C380, and C395&amp;lt;ref name=&amp;quot;paper3&amp;quot;&amp;gt;PMID:18988191&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
==Additional Information==&lt;br /&gt;
&amp;lt;Structure load=&#039;1CI8&#039; size=&#039;300&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;&#039; scene=&#039;Sandbox_Reserved_316/Estb/1&#039;/&amp;gt;&lt;br /&gt;
As simvastatin is an active pharmaceutical ingredient in the cholesterol-lowering drug Zocor®, its efficient synthesis from lovastatin, via LovD is intensely pursued &amp;lt;ref name=&amp;quot;paper4&amp;quot;&amp;gt;PMID:19875080&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
The protein-protein interaction between LovD and the acyl carrier protein domain of LovF facilitates the highly efficient tailoring reaction during LVA biosynthesis &amp;lt;ref name=&amp;quot;paper4&amp;quot;&amp;gt;PMID:&lt;br /&gt;
17113998&amp;lt;/ref&amp;gt;. The alpha-S-methylbutyrate side chain is synthesized by the lovastatin diketide synthase (LDKS) LovF and then transferred by LovD regioselectively to the C8 hydroxyl of MJA&amp;lt;ref name=&amp;quot;paper3&amp;quot;&amp;gt;PMID:18988191&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
Among enzymes that of known structures, EstB (cephalosporin esterase), is homologous to LovD: 26% sequence identity &amp;lt;ref name=&amp;quot;paper6&amp;quot;&amp;gt;PMID:&lt;br /&gt;
11847270&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
==References==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Eric Ginter</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_316&amp;diff=1224622</id>
		<title>Sandbox Reserved 316</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_316&amp;diff=1224622"/>
		<updated>2011-04-04T01:18:01Z</updated>

		<summary type="html">&lt;p&gt;Eric Ginter: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Template:Sandbox_Reserved_BCMB307}}&lt;br /&gt;
 &amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
==Introduction==&lt;br /&gt;
[[Image:svs.jpg|300px|left|thumb|]]&#039;&#039;&#039;Simvastatin synthase&#039;&#039;&#039; (LovD) is a 46 kDa acyltransferase found in the lovastatin biosynthetic pathway and catalyzes the final step of lovastatin biosynthesis&amp;lt;ref name=&amp;quot;paper4&amp;quot;&amp;gt;PMID:&lt;br /&gt;
17113998&amp;lt;/ref&amp;gt;. Pictured here is the generated double mutant C40A/C60N (G0), from wild type LovD (Figure 1).&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
This enzyme is isolated from the natural product biosynthetic pathways of &#039;&#039;Aspergillus terreus&#039;&#039;, specifically the polyketide biosynthetic pathway. Simvastatin Synthase  converts the inactive monacolin J acid (&amp;lt;scene name=&#039;Sandbox_Reserved_316/Blah/3&#039;&amp;gt;MJA&amp;lt;/scene&amp;gt;) by dimethylbutyryl chloride to yield the protected form of simvastatin (Figure 2), which subsequently undergoes lactonization to yield simvastatin&amp;lt;ref name=&amp;quot;paper5&amp;quot;&amp;gt;PMID:19875080&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
[[Image:Sim_mja.jpg]]&lt;br /&gt;
&lt;br /&gt;
LovD can also synthesize the blockbuster drug simvastatin using MJA and a synthetic α-dimethylbutyryl thioester&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;.&lt;br /&gt;
==Exploring the structure==&lt;br /&gt;
{{STRUCTURE_3hle |  PDB=3hle  |  SCENE=  }} &lt;br /&gt;
LovD is a 413-amino acid protein predicted to have an α/β hydrolase fold based on primary sequence analysis&amp;lt;ref name=&amp;quot;paper2&amp;quot;&amp;gt;PMID:10334994&amp;lt;/ref&amp;gt;. &lt;br /&gt;
LovD has of two domains. The &amp;lt;scene name=&#039;Sandbox_Reserved_316/First_domain_1/1&#039;&amp;gt;first domain&amp;lt;/scene&amp;gt;, which consists of residues 1–92 and 204–413, is a central seven-stranded antiparallel β-sheet flanked by α-helices on either face&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;. The &amp;lt;scene name=&#039;Sandbox_Reserved_316/Second_domain_1/1&#039;&amp;gt;second domain&amp;lt;/scene&amp;gt; is smaller, consists of residues 93–203 and is primarily α-helical&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
At the core of the enzyme, there are notable loops peripheral to the active site, both in size and architecture. Upon ligand binding LovD undergoes a conformational change analogous to the closing of a catcher&#039;s mitt by these loops. This ringshaped ridge over the active site with fingers is composed of &amp;lt;scene name=&#039;Sandbox_Reserved_316/5_loops/2&#039;&amp;gt;five loops&amp;lt;/scene&amp;gt;: residues 114–125, 147–173, 243–258, 321–327, and 388–391&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
LovD has &amp;lt;scene name=&#039;Sandbox_Reserved_316/Cysteines/2&#039;&amp;gt;nine cysteines&amp;lt;/scene&amp;gt; at the following positions: C40, C49, C60, C72, C89, C216, C266, C380, and C395&amp;lt;ref name=&amp;quot;paper3&amp;quot;&amp;gt;PMID:18988191&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
==Additional Information==&lt;br /&gt;
&amp;lt;Structure load=&#039;1CI8&#039; size=&#039;300&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;&#039; scene=&#039;Sandbox_Reserved_316/Estb/1&#039;/&amp;gt;&lt;br /&gt;
As simvastatin is an active pharmaceutical ingredient in the cholesterol-lowering drug Zocor®, its efficient synthesis from lovastatin, via LovD is intensely pursued &amp;lt;ref name=&amp;quot;paper4&amp;quot;&amp;gt;PMID:19875080&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
The protein-protein interaction between LovD and the acyl carrier protein domain of LovF facilitates the highly efficient tailoring reaction during LVA biosynthesis &amp;lt;ref name=&amp;quot;paper4&amp;quot;&amp;gt;PMID:&lt;br /&gt;
17113998&amp;lt;/ref&amp;gt;. The alpha-S-methylbutyrate side chain is synthesized by the lovastatin diketide synthase (LDKS) LovF and then transferred by LovD regioselectively to the C8 hydroxyl of MJA&amp;lt;ref name=&amp;quot;paper3&amp;quot;&amp;gt;PMID:18988191&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
Among enzymes that of known structures, EstB (cephalosporin esterase), is homologous to LovD: 26% sequence identity &amp;lt;ref name=&amp;quot;paper6&amp;quot;&amp;gt;PMID:&lt;br /&gt;
11847270&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
==References==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Eric Ginter</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_316&amp;diff=1224621</id>
		<title>Sandbox Reserved 316</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_316&amp;diff=1224621"/>
		<updated>2011-04-04T01:17:20Z</updated>

		<summary type="html">&lt;p&gt;Eric Ginter: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Template:Sandbox_Reserved_BCMB307}}&lt;br /&gt;
 &amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
==Introduction==&lt;br /&gt;
[[Image:svs.jpg|300px|left|thumb|]]&#039;&#039;&#039;Simvastatin synthase&#039;&#039;&#039; (LovD) is a 46 kDa acyltransferase found in the lovastatin biosynthetic pathway and catalyzes the final step of lovastatin biosynthesis&amp;lt;ref name=&amp;quot;paper4&amp;quot;&amp;gt;PMID:&lt;br /&gt;
17113998&amp;lt;/ref&amp;gt;. Pictured here is the generated double mutant C40A/C60N (G0), from wild type LovD (Figure 1).&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
This enzyme is isolated from the natural product biosynthetic pathways of &#039;&#039;Aspergillus terreus&#039;&#039;, specifically the polyketide biosynthetic pathway. Simvastatin Synthase  converts the inactive monacolin J acid (&amp;lt;scene name=&#039;Sandbox_Reserved_316/Blah/3&#039;&amp;gt;MJA&amp;lt;/scene&amp;gt;) by dimethylbutyryl chloride to yield the protected form of simvastatin (Figure 2), which subsequently undergoes lactonization to yield simvastatin&amp;lt;ref name=&amp;quot;paper5&amp;quot;&amp;gt;PMID:19875080&amp;lt;/ref&amp;gt;.&lt;br /&gt;
[[Image:Sim_mja.jpg]]&lt;br /&gt;
&lt;br /&gt;
LovD can also synthesize the blockbuster drug simvastatin using MJA and a synthetic α-dimethylbutyryl thioester&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;.&lt;br /&gt;
==Exploring the structure==&lt;br /&gt;
{{STRUCTURE_3hle |  PDB=3hle  |  SCENE=  }} &lt;br /&gt;
LovD is a 413-amino acid protein predicted to have an α/β hydrolase fold based on primary sequence analysis&amp;lt;ref name=&amp;quot;paper2&amp;quot;&amp;gt;PMID:10334994&amp;lt;/ref&amp;gt;. &lt;br /&gt;
LovD has of two domains. The &amp;lt;scene name=&#039;Sandbox_Reserved_316/First_domain_1/1&#039;&amp;gt;first domain&amp;lt;/scene&amp;gt;, which consists of residues 1–92 and 204–413, is a central seven-stranded antiparallel β-sheet flanked by α-helices on either face&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;. The &amp;lt;scene name=&#039;Sandbox_Reserved_316/Second_domain_1/1&#039;&amp;gt;second domain&amp;lt;/scene&amp;gt; is smaller, consists of residues 93–203 and is primarily α-helical&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
At the core of the enzyme, there are notable loops peripheral to the active site, both in size and architecture. Upon ligand binding LovD undergoes a conformational change analogous to the closing of a catcher&#039;s mitt by these loops. This ringshaped ridge over the active site with fingers is composed of &amp;lt;scene name=&#039;Sandbox_Reserved_316/5_loops/2&#039;&amp;gt;five loops&amp;lt;/scene&amp;gt;: residues 114–125, 147–173, 243–258, 321–327, and 388–391&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
LovD has &amp;lt;scene name=&#039;Sandbox_Reserved_316/Cysteines/2&#039;&amp;gt;nine cysteines&amp;lt;/scene&amp;gt; at the following positions: C40, C49, C60, C72, C89, C216, C266, C380, and C395&amp;lt;ref name=&amp;quot;paper3&amp;quot;&amp;gt;PMID:18988191&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
==Additional Information==&lt;br /&gt;
&amp;lt;Structure load=&#039;1CI8&#039; size=&#039;300&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;&#039; scene=&#039;Sandbox_Reserved_316/Estb/1&#039;/&amp;gt;&lt;br /&gt;
As simvastatin is an active pharmaceutical ingredient in the cholesterol-lowering drug Zocor®, its efficient synthesis from lovastatin, via LovD is intensely pursued &amp;lt;ref name=&amp;quot;paper4&amp;quot;&amp;gt;PMID:19875080&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
The protein-protein interaction between LovD and the acyl carrier protein domain of LovF facilitates the highly efficient tailoring reaction during LVA biosynthesis &amp;lt;ref name=&amp;quot;paper4&amp;quot;&amp;gt;PMID:&lt;br /&gt;
17113998&amp;lt;/ref&amp;gt;. The alpha-S-methylbutyrate side chain is synthesized by the lovastatin diketide synthase (LDKS) LovF and then transferred by LovD regioselectively to the C8 hydroxyl of MJA&amp;lt;ref name=&amp;quot;paper3&amp;quot;&amp;gt;PMID:18988191&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
Among enzymes that of known structures, EstB (cephalosporin esterase), is homologous to LovD: 26% sequence identity &amp;lt;ref name=&amp;quot;paper6&amp;quot;&amp;gt;PMID:&lt;br /&gt;
11847270&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
==References==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Eric Ginter</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_316&amp;diff=1224619</id>
		<title>Sandbox Reserved 316</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_316&amp;diff=1224619"/>
		<updated>2011-04-04T01:16:44Z</updated>

		<summary type="html">&lt;p&gt;Eric Ginter: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Template:Sandbox_Reserved_BCMB307}}&lt;br /&gt;
 &amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
==Introduction==&lt;br /&gt;
[[Image:svs.jpg|200px|left|thumb|]]&#039;&#039;&#039;Simvastatin synthase&#039;&#039;&#039; (LovD) is a 46 kDa acyltransferase found in the lovastatin biosynthetic pathway and catalyzes the final step of lovastatin biosynthesis&amp;lt;ref name=&amp;quot;paper4&amp;quot;&amp;gt;PMID:&lt;br /&gt;
17113998&amp;lt;/ref&amp;gt;. Pictured here is the generated double mutant C40A/C60N (G0), from wild type LovD (Figure 1).&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
This enzyme is isolated from the natural product biosynthetic pathways of &#039;&#039;Aspergillus terreus&#039;&#039;, specifically the polyketide biosynthetic pathway. Simvastatin Synthase  converts the inactive monacolin J acid (&amp;lt;scene name=&#039;Sandbox_Reserved_316/Blah/3&#039;&amp;gt;MJA&amp;lt;/scene&amp;gt;) by dimethylbutyryl chloride to yield the protected form of simvastatin (Figure 2), which subsequently undergoes lactonization to yield simvastatin&amp;lt;ref name=&amp;quot;paper5&amp;quot;&amp;gt;PMID:19875080&amp;lt;/ref&amp;gt;.&lt;br /&gt;
[[Image:Sim_mja.jpg]]&lt;br /&gt;
&lt;br /&gt;
LovD can also synthesize the blockbuster drug simvastatin using MJA and a synthetic α-dimethylbutyryl thioester&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;.&lt;br /&gt;
==Exploring the structure==&lt;br /&gt;
{{STRUCTURE_3hle |  PDB=3hle  |  SCENE=  }} &lt;br /&gt;
LovD is a 413-amino acid protein predicted to have an α/β hydrolase fold based on primary sequence analysis&amp;lt;ref name=&amp;quot;paper2&amp;quot;&amp;gt;PMID:10334994&amp;lt;/ref&amp;gt;. &lt;br /&gt;
LovD has of two domains. The &amp;lt;scene name=&#039;Sandbox_Reserved_316/First_domain_1/1&#039;&amp;gt;first domain&amp;lt;/scene&amp;gt;, which consists of residues 1–92 and 204–413, is a central seven-stranded antiparallel β-sheet flanked by α-helices on either face&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;. The &amp;lt;scene name=&#039;Sandbox_Reserved_316/Second_domain_1/1&#039;&amp;gt;second domain&amp;lt;/scene&amp;gt; is smaller, consists of residues 93–203 and is primarily α-helical&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
At the core of the enzyme, there are notable loops peripheral to the active site, both in size and architecture. Upon ligand binding LovD undergoes a conformational change analogous to the closing of a catcher&#039;s mitt by these loops. This ringshaped ridge over the active site with fingers is composed of &amp;lt;scene name=&#039;Sandbox_Reserved_316/5_loops/2&#039;&amp;gt;five loops&amp;lt;/scene&amp;gt;: residues 114–125, 147–173, 243–258, 321–327, and 388–391&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
LovD has &amp;lt;scene name=&#039;Sandbox_Reserved_316/Cysteines/2&#039;&amp;gt;nine cysteines&amp;lt;/scene&amp;gt; at the following positions: C40, C49, C60, C72, C89, C216, C266, C380, and C395&amp;lt;ref name=&amp;quot;paper3&amp;quot;&amp;gt;PMID:18988191&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
==Additional Information==&lt;br /&gt;
&amp;lt;Structure load=&#039;1CI8&#039; size=&#039;300&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;&#039; scene=&#039;Sandbox_Reserved_316/Estb/1&#039;/&amp;gt;&lt;br /&gt;
As simvastatin is an active pharmaceutical ingredient in the cholesterol-lowering drug Zocor®, its efficient synthesis from lovastatin, via LovD is intensely pursued &amp;lt;ref name=&amp;quot;paper4&amp;quot;&amp;gt;PMID:19875080&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
The protein-protein interaction between LovD and the acyl carrier protein domain of LovF facilitates the highly efficient tailoring reaction during LVA biosynthesis &amp;lt;ref name=&amp;quot;paper4&amp;quot;&amp;gt;PMID:&lt;br /&gt;
17113998&amp;lt;/ref&amp;gt;. The alpha-S-methylbutyrate side chain is synthesized by the lovastatin diketide synthase (LDKS) LovF and then transferred by LovD regioselectively to the C8 hydroxyl of MJA&amp;lt;ref name=&amp;quot;paper3&amp;quot;&amp;gt;PMID:18988191&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
Among enzymes that of known structures, EstB (cephalosporin esterase), is homologous to LovD: 26% sequence identity &amp;lt;ref name=&amp;quot;paper6&amp;quot;&amp;gt;PMID:&lt;br /&gt;
11847270&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
==References==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Eric Ginter</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_316&amp;diff=1224617</id>
		<title>Sandbox Reserved 316</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_316&amp;diff=1224617"/>
		<updated>2011-04-04T01:14:52Z</updated>

		<summary type="html">&lt;p&gt;Eric Ginter: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Template:Sandbox_Reserved_BCMB307}}&lt;br /&gt;
 &amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
{{STRUCTURE_3hle |  PDB=3hle  |  SCENE=  }} &lt;br /&gt;
==Introduction==&lt;br /&gt;
[[Image:svs.jpg|200px|left|thumb|]]&#039;&#039;&#039;Simvastatin synthase&#039;&#039;&#039; (LovD) is a 46 kDa acyltransferase found in the lovastatin biosynthetic pathway and catalyzes the final step of lovastatin biosynthesis&amp;lt;ref name=&amp;quot;paper4&amp;quot;&amp;gt;PMID:&lt;br /&gt;
17113998&amp;lt;/ref&amp;gt;. Pictured here is the generated double mutant C40A/C60N (G0), from wild type LovD (Figure 1).&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
This enzyme is isolated from the natural product biosynthetic pathways of &#039;&#039;Aspergillus terreus&#039;&#039;, specifically the polyketide biosynthetic pathway. Simvastatin Synthase  converts the inactive monacolin J acid (&amp;lt;scene name=&#039;Sandbox_Reserved_316/Blah/3&#039;&amp;gt;MJA&amp;lt;/scene&amp;gt;) by dimethylbutyryl chloride to yield the protected form of simvastatin (Figure 2), which subsequently undergoes lactonization to yield simvastatin&amp;lt;ref name=&amp;quot;paper5&amp;quot;&amp;gt;PMID:19875080&amp;lt;/ref&amp;gt;.&lt;br /&gt;
[[Image:Sim_mja.jpg]]&lt;br /&gt;
&lt;br /&gt;
LovD can also synthesize the blockbuster drug simvastatin using MJA and a synthetic α-dimethylbutyryl thioester&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;.&lt;br /&gt;
==Exploring the structure==&lt;br /&gt;
LovD is a 413-amino acid protein predicted to have an α/β hydrolase fold based on primary sequence analysis&amp;lt;ref name=&amp;quot;paper2&amp;quot;&amp;gt;PMID:10334994&amp;lt;/ref&amp;gt;. &lt;br /&gt;
LovD has of two domains. The &amp;lt;scene name=&#039;Sandbox_Reserved_316/First_domain_1/1&#039;&amp;gt;first domain&amp;lt;/scene&amp;gt;, which consists of residues 1–92 and 204–413, is a central seven-stranded antiparallel β-sheet flanked by α-helices on either face&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;. The &amp;lt;scene name=&#039;Sandbox_Reserved_316/Second_domain_1/1&#039;&amp;gt;second domain&amp;lt;/scene&amp;gt; is smaller, consists of residues 93–203 and is primarily α-helical&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
At the core of the enzyme, there are notable loops peripheral to the active site, both in size and architecture. Upon ligand binding LovD undergoes a conformational change analogous to the closing of a catcher&#039;s mitt by these loops. This ringshaped ridge over the active site with fingers is composed of &amp;lt;scene name=&#039;Sandbox_Reserved_316/5_loops/2&#039;&amp;gt;five loops&amp;lt;/scene&amp;gt;: residues 114–125, 147–173, 243–258, 321–327, and 388–391&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
LovD has &amp;lt;scene name=&#039;Sandbox_Reserved_316/Cysteines/2&#039;&amp;gt;nine cysteines&amp;lt;/scene&amp;gt; at the following positions: C40, C49, C60, C72, C89, C216, C266, C380, and C395&amp;lt;ref name=&amp;quot;paper3&amp;quot;&amp;gt;PMID:18988191&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
==Additional Information==&lt;br /&gt;
&amp;lt;Structure load=&#039;1CI8&#039; size=&#039;300&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;&#039; scene=&#039;Sandbox_Reserved_316/Estb/1&#039;/&amp;gt;&lt;br /&gt;
As simvastatin is an active pharmaceutical ingredient in the cholesterol-lowering drug Zocor®, its efficient synthesis from lovastatin, via LovD is intensely pursued &amp;lt;ref name=&amp;quot;paper4&amp;quot;&amp;gt;PMID:19875080&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
The protein-protein interaction between LovD and the acyl carrier protein domain of LovF facilitates the highly efficient tailoring reaction during LVA biosynthesis &amp;lt;ref name=&amp;quot;paper4&amp;quot;&amp;gt;PMID:&lt;br /&gt;
17113998&amp;lt;/ref&amp;gt;. The alpha-S-methylbutyrate side chain is synthesized by the lovastatin diketide synthase (LDKS) LovF and then transferred by LovD regioselectively to the C8 hydroxyl of MJA&amp;lt;ref name=&amp;quot;paper3&amp;quot;&amp;gt;PMID:18988191&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
Among enzymes that of known structures, EstB (cephalosporin esterase), is homologous to LovD: 26% sequence identity &amp;lt;ref name=&amp;quot;paper6&amp;quot;&amp;gt;PMID:&lt;br /&gt;
11847270&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
==References==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Eric Ginter</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_316&amp;diff=1224486</id>
		<title>Sandbox Reserved 316</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_316&amp;diff=1224486"/>
		<updated>2011-04-03T22:16:57Z</updated>

		<summary type="html">&lt;p&gt;Eric Ginter: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Template:Sandbox_Reserved_BCMB307}}&lt;br /&gt;
 &amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
{{STRUCTURE_3hle |  PDB=3hle  |  SCENE=  }} &lt;br /&gt;
==Introduction==&lt;br /&gt;
[[Image:svs.jpg|200px|left|thumb|]]&#039;&#039;&#039;Simvastatin synthase&#039;&#039;&#039; (LovD) is a 46 kDa acyltransferase found in the lovastatin biosynthetic pathway and catalyzes the final step of lovastatin biosynthesis&amp;lt;ref name=&amp;quot;paper4&amp;quot;&amp;gt;PMID:&lt;br /&gt;
17113998&amp;lt;/ref&amp;gt;. Pictured here is the generated double mutant C40A/C60N (G0), from wild type LovD (Figure 1).&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
This enzyme is isolated from the natural product biosynthetic pathways of &#039;&#039;Aspergillus terreus&#039;&#039;, specifically the polyketide biosynthetic pathway. Simvastatin Synthase  converts the inactive monacolin J acid (&amp;lt;scene name=&#039;Sandbox_Reserved_316/Blah/3&#039;&amp;gt;MJA&amp;lt;/scene&amp;gt;) by dimethylbutyryl chloride to yield the protected form of simvastatin (Figure 2), which subsequently undergoes lactonization to yield simvastatin&amp;lt;ref name=&amp;quot;paper5&amp;quot;&amp;gt;PMID:19875080&amp;lt;/ref&amp;gt;.&lt;br /&gt;
[[Image:Sim_mja.jpg]]&lt;br /&gt;
&lt;br /&gt;
LovD can also synthesize the blockbuster drug simvastatin using MJA and a synthetic α-dimethylbutyryl thioester&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;.&lt;br /&gt;
==Exploring the structure==&lt;br /&gt;
LovD is a 413-amino acid protein predicted to have an α/β hydrolase fold based on primary sequence analysis&amp;lt;ref name=&amp;quot;paper2&amp;quot;&amp;gt;PMID:10334994&amp;lt;/ref&amp;gt;. &lt;br /&gt;
LovD has of two domains. The &amp;lt;scene name=&#039;Sandbox_Reserved_316/First_domain_1/1&#039;&amp;gt;first domain&amp;lt;/scene&amp;gt;, which consists of residues 1–92 and 204–413, is a central seven-stranded antiparallel β-sheet flanked by α-helices on either face&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;. The &amp;lt;scene name=&#039;Sandbox_Reserved_316/Second_domain_1/1&#039;&amp;gt;second domain&amp;lt;/scene&amp;gt; is smaller, consists of residues 93–203 and is primarily α-helical&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
At the core of the enzyme, there are notable loops peripheral to the active site, both in size and architecture. Upon ligand binding LovD undergoes a conformational change analogous to the closing of a catcher&#039;s mitt by these loops. This ringshaped ridge over the active site with fingers is composed of &amp;lt;scene name=&#039;Sandbox_Reserved_316/5_loops/2&#039;&amp;gt;five loops&amp;lt;/scene&amp;gt;: residues 114–125, 147–173, 243–258, 321–327, and 388–391&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
LovD has &amp;lt;scene name=&#039;Sandbox_Reserved_316/Cysteines/2&#039;&amp;gt;nine cysteines&amp;lt;/scene&amp;gt; at the following positions: C40, C49, C60, C72, C89, C216, C266, C380, and C395&amp;lt;ref name=&amp;quot;paper3&amp;quot;&amp;gt;PMID:18988191&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
==Additional Information==&lt;br /&gt;
As simvastatin is an active pharmaceutical ingredient in the cholesterol-lowering drug Zocor®, its efficient synthesis from lovastatin, via LovD is intensely pursued &amp;lt;ref name=&amp;quot;paper4&amp;quot;&amp;gt;PMID:19875080&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
The protein-protein interaction between LovD and the acyl carrier protein domain of LovF facilitates the highly efficient tailoring reaction during LVA biosynthesis &amp;lt;ref name=&amp;quot;paper4&amp;quot;&amp;gt;PMID:&lt;br /&gt;
17113998&amp;lt;/ref&amp;gt;. The alpha-S-methylbutyrate side chain is synthesized by the lovastatin diketide synthase (LDKS) LovF and then transferred by LovD regioselectively to the C8 hydroxyl of MJA&amp;lt;ref name=&amp;quot;paper3&amp;quot;&amp;gt;PMID:18988191&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
Among enzymes that of known structures,&amp;lt;scene name=&#039;Sandbox_Reserved_316/Estb/1&#039;&amp;gt;EstB&amp;lt;/scene&amp;gt; (cephalosporin esterase), is homologous to LovD: 26% sequence identity &amp;lt;ref name=&amp;quot;paper6&amp;quot;&amp;gt;PMID:&lt;br /&gt;
11847270&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
==References==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Eric Ginter</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_316&amp;diff=1224484</id>
		<title>Sandbox Reserved 316</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_316&amp;diff=1224484"/>
		<updated>2011-04-03T22:15:56Z</updated>

		<summary type="html">&lt;p&gt;Eric Ginter: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Template:Sandbox_Reserved_BCMB307}}&lt;br /&gt;
 &amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
{{STRUCTURE_3hle |  PDB=3hle  |  SCENE=  }} &lt;br /&gt;
==Introduction==&lt;br /&gt;
[[Image:svs.jpg|200px|left|thumb|]]&#039;&#039;&#039;Simvastatin synthase&#039;&#039;&#039; (LovD) is a 46 kDa acyltransferase found in the lovastatin biosynthetic pathway and catalyzes the final step of lovastatin biosynthesis&amp;lt;ref name=&amp;quot;paper4&amp;quot;&amp;gt;PMID:&lt;br /&gt;
17113998&amp;lt;/ref&amp;gt;. Pictured here is the generated double mutant C40A/C60N (G0), from wild type LovD (Figure 1).&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
This enzyme is isolated from the natural product biosynthetic pathways of &#039;&#039;Aspergillus terreus&#039;&#039;, specifically the polyketide biosynthetic pathway. Simvastatin Synthase  converts the inactive monacolin J acid (&amp;lt;scene name=&#039;Sandbox_Reserved_316/Blah/3&#039;&amp;gt;MJA&amp;lt;/scene&amp;gt;) by dimethylbutyryl chloride to yield the protected form of simvastatin (Figure 2), which subsequently undergoes lactonization to yield simvastatin&amp;lt;ref name=&amp;quot;paper5&amp;quot;&amp;gt;PMID:19875080&amp;lt;/ref&amp;gt;.&lt;br /&gt;
[[Image:Sim_mja.jpg]]&lt;br /&gt;
&lt;br /&gt;
LovD can also synthesize the blockbuster drug simvastatin using MJA and a synthetic α-dimethylbutyryl thioester&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;.&lt;br /&gt;
==Exploring the structure==&lt;br /&gt;
LovD is a 413-amino acid protein predicted to have an α/β hydrolase fold based on primary sequence analysis&amp;lt;ref name=&amp;quot;paper2&amp;quot;&amp;gt;PMID:10334994&amp;lt;/ref&amp;gt;. &lt;br /&gt;
LovD has of two domains. The &amp;lt;scene name=&#039;Sandbox_Reserved_316/First_domain_1/1&#039;&amp;gt;first domain&amp;lt;/scene&amp;gt;, which consists of residues 1–92 and 204–413, is a central seven-stranded antiparallel β-sheet flanked by α-helices on either face&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;. The &amp;lt;scene name=&#039;Sandbox_Reserved_316/Second_domain_1/1&#039;&amp;gt;second domain&amp;lt;/scene&amp;gt; is smaller, consists of residues 93–203 and is primarily α-helical&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
At the core of the enzyme, there are notable loops peripheral to the active site, both in size and architecture. Upon ligand binding LovD undergoes a conformational change analogous to the closing of a catcher&#039;s mitt by these loops. This ringshaped ridge over the active site with fingers is composed of &amp;lt;scene name=&#039;Sandbox_Reserved_316/5_loops/2&#039;&amp;gt;five loops&amp;lt;/scene&amp;gt;: residues 114–125, 147–173, 243–258, 321–327, and 388–391&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
LovD has &amp;lt;scene name=&#039;Sandbox_Reserved_316/Cysteines/2&#039;&amp;gt;nine cysteines&amp;lt;/scene&amp;gt; at the following positions: C40, C49, C60, C72, C89, C216, C266, C380, and C395&amp;lt;ref name=&amp;quot;paper3&amp;quot;&amp;gt;PMID:18988191&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
==Additional Information==&lt;br /&gt;
As simvastatin is an active pharmaceutical ingredient in the cholesterol-lowering drug Zocor®, its efficient synthesis from lovastatin, via LovD is intensely pursued &amp;lt;ref name=&amp;quot;paper4&amp;quot;&amp;gt;PMID:19875080&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
The protein-protein interaction between LovD and the acyl carrier protein domain of LovF facilitates the highly efficient tailoring reaction during LVA biosynthesis &amp;lt;ref name=&amp;quot;paper4&amp;quot;&amp;gt;PMID:&lt;br /&gt;
17113998&amp;lt;/ref&amp;gt;. The alpha-S-methylbutyrate side chain is synthesized by the lovastatin diketide synthase (LDKS) LovF and then transferred by LovD regioselectively to the C8 hydroxyl of MJA&amp;lt;ref name=&amp;quot;paper3&amp;quot;&amp;gt;PMID:18988191&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
Among enzyme that have known structures, EstB &amp;lt;scene name=&#039;Sandbox_Reserved_316/Estb/1&#039;&amp;gt;EstB&amp;lt;/scene&amp;gt; (cephalosporin esterase), is homologous to LovD: 26% sequence identity &amp;lt;ref name=&amp;quot;paper6&amp;quot;&amp;gt;PMID:&lt;br /&gt;
11847270&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
==References==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Eric Ginter</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_316&amp;diff=1224476</id>
		<title>Sandbox Reserved 316</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_316&amp;diff=1224476"/>
		<updated>2011-04-03T22:08:02Z</updated>

		<summary type="html">&lt;p&gt;Eric Ginter: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Template:Sandbox_Reserved_BCMB307}}&lt;br /&gt;
 &amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
{{STRUCTURE_3hle |  PDB=3hle  |  SCENE=  }} &lt;br /&gt;
==Introduction==&lt;br /&gt;
[[Image:svs.jpg|200px|left|thumb|]]&#039;&#039;&#039;Simvastatin synthase&#039;&#039;&#039; (LovD) is a 46 kDa acyltransferase found in the lovastatin biosynthetic pathway and catalyzes the final step of lovastatin biosynthesis&amp;lt;ref name=&amp;quot;paper4&amp;quot;&amp;gt;PMID:&lt;br /&gt;
17113998&amp;lt;/ref&amp;gt;. Pictured here is the generated double mutant C40A/C60N (G0), from wild type LovD (Figure 1).&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
This enzyme is isolated from the natural product biosynthetic pathways of &#039;&#039;Aspergillus terreus&#039;&#039;, specifically the polyketide biosynthetic pathway. Simvastatin Synthase  converts the inactive monacolin J acid (&amp;lt;scene name=&#039;Sandbox_Reserved_316/Blah/3&#039;&amp;gt;MJA&amp;lt;/scene&amp;gt;) by dimethylbutyryl chloride to yield the protected form of simvastatin (Figure 2), which subsequently undergoes lactonization to yield simvastatin&amp;lt;ref name=&amp;quot;paper5&amp;quot;&amp;gt;PMID:19875080&amp;lt;/ref&amp;gt;.&lt;br /&gt;
[[Image:Sim_mja.jpg]]&lt;br /&gt;
&lt;br /&gt;
LovD can also synthesize the blockbuster drug simvastatin using MJA and a synthetic α-dimethylbutyryl thioester&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;.&lt;br /&gt;
==Exploring the structure==&lt;br /&gt;
LovD is a 413-amino acid protein predicted to have an α/β hydrolase fold based on primary sequence analysis&amp;lt;ref name=&amp;quot;paper2&amp;quot;&amp;gt;PMID:10334994&amp;lt;/ref&amp;gt;. &lt;br /&gt;
LovD has of two domains. The &amp;lt;scene name=&#039;Sandbox_Reserved_316/First_domain_1/1&#039;&amp;gt;first domain&amp;lt;/scene&amp;gt;, which consists of residues 1–92 and 204–413, is a central seven-stranded antiparallel β-sheet flanked by α-helices on either face&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;. The &amp;lt;scene name=&#039;Sandbox_Reserved_316/Second_domain_1/1&#039;&amp;gt;second domain&amp;lt;/scene&amp;gt; is smaller, consists of residues 93–203 and is primarily α-helical&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
At the core of the enzyme, there are notable loops peripheral to the active site, both in size and architecture. Upon ligand binding LovD undergoes a conformational change analogous to the closing of a catcher&#039;s mitt by these loops. This ringshaped ridge over the active site with fingers is composed of &amp;lt;scene name=&#039;Sandbox_Reserved_316/5_loops/2&#039;&amp;gt;five loops&amp;lt;/scene&amp;gt;: residues 114–125, 147–173, 243–258, 321–327, and 388–391&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
LovD has &amp;lt;scene name=&#039;Sandbox_Reserved_316/Cysteines/2&#039;&amp;gt;nine cysteines&amp;lt;/scene&amp;gt; at the following positions: C40, C49, C60, C72, C89, C216, C266, C380, and C395&amp;lt;ref name=&amp;quot;paper3&amp;quot;&amp;gt;PMID:18988191&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
==Additional Information==&lt;br /&gt;
{{STRUCTURE_1CI8 |  PDB=1CI8 |  SCENE=  |200px|right|}}&lt;br /&gt;
As simvastatin is an active pharmaceutical ingredient in the cholesterol-lowering drug Zocor®, its efficient synthesis from lovastatin, via LovD is intensely pursued &amp;lt;ref name=&amp;quot;paper4&amp;quot;&amp;gt;PMID:19875080&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
The protein-protein interaction between LovD and the acyl carrier protein domain of LovF facilitates the highly efficient tailoring reaction during LVA biosynthesis &amp;lt;ref name=&amp;quot;paper4&amp;quot;&amp;gt;PMID:&lt;br /&gt;
17113998&amp;lt;/ref&amp;gt;. The alpha-S-methylbutyrate side chain is synthesized by the lovastatin diketide synthase (LDKS) LovF and then transferred by LovD regioselectively to the C8 hydroxyl of MJA&amp;lt;ref name=&amp;quot;paper3&amp;quot;&amp;gt;PMID:18988191&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
Among enzyme that have known structures, EstB (cephalosporin esterase), is homologous to LovD: 26% sequence identity &amp;lt;ref name=&amp;quot;paper6&amp;quot;&amp;gt;PMID:&lt;br /&gt;
11847270&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
==References==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Eric Ginter</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_316&amp;diff=1224475</id>
		<title>Sandbox Reserved 316</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_316&amp;diff=1224475"/>
		<updated>2011-04-03T22:05:11Z</updated>

		<summary type="html">&lt;p&gt;Eric Ginter: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Template:Sandbox_Reserved_BCMB307}}&lt;br /&gt;
 &amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
{{STRUCTURE_3hle |  PDB=3hle  |  SCENE=  }} &lt;br /&gt;
==Introduction==&lt;br /&gt;
[[Image:svs.jpg|200px|left|thumb|]]&#039;&#039;&#039;Simvastatin synthase&#039;&#039;&#039; (LovD) is a 46 kDa acyltransferase found in the lovastatin biosynthetic pathway and catalyzes the final step of lovastatin biosynthesis&amp;lt;ref name=&amp;quot;paper4&amp;quot;&amp;gt;PMID:&lt;br /&gt;
17113998&amp;lt;/ref&amp;gt;. Pictured here is the generated double mutant C40A/C60N (G0), from wild type LovD (Figure 1).&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
This enzyme is isolated from the natural product biosynthetic pathways of &#039;&#039;Aspergillus terreus&#039;&#039;, specifically the polyketide biosynthetic pathway. Simvastatin Synthase  converts the inactive monacolin J acid (&amp;lt;scene name=&#039;Sandbox_Reserved_316/Blah/3&#039;&amp;gt;MJA&amp;lt;/scene&amp;gt;) by dimethylbutyryl chloride to yield the protected form of simvastatin (Figure 2), which subsequently undergoes lactonization to yield simvastatin&amp;lt;ref name=&amp;quot;paper5&amp;quot;&amp;gt;PMID:19875080&amp;lt;/ref&amp;gt;.&lt;br /&gt;
[[Image:Sim_mja.jpg]]&lt;br /&gt;
&lt;br /&gt;
LovD can also synthesize the blockbuster drug simvastatin using MJA and a synthetic α-dimethylbutyryl thioester&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;.&lt;br /&gt;
==Exploring the structure==&lt;br /&gt;
LovD is a 413-amino acid protein predicted to have an α/β hydrolase fold based on primary sequence analysis&amp;lt;ref name=&amp;quot;paper2&amp;quot;&amp;gt;PMID:10334994&amp;lt;/ref&amp;gt;. &lt;br /&gt;
LovD has of two domains. The &amp;lt;scene name=&#039;Sandbox_Reserved_316/First_domain_1/1&#039;&amp;gt;first domain&amp;lt;/scene&amp;gt;, which consists of residues 1–92 and 204–413, is a central seven-stranded antiparallel β-sheet flanked by α-helices on either face&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;. The &amp;lt;scene name=&#039;Sandbox_Reserved_316/Second_domain_1/1&#039;&amp;gt;second domain&amp;lt;/scene&amp;gt; is smaller, consists of residues 93–203 and is primarily α-helical&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
At the core of the enzyme, there are notable loops peripheral to the active site, both in size and architecture. Upon ligand binding LovD undergoes a conformational change analogous to the closing of a catcher&#039;s mitt by these loops. This ringshaped ridge over the active site with fingers is composed of &amp;lt;scene name=&#039;Sandbox_Reserved_316/5_loops/2&#039;&amp;gt;five loops&amp;lt;/scene&amp;gt;: residues 114–125, 147–173, 243–258, 321–327, and 388–391&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
LovD has &amp;lt;scene name=&#039;Sandbox_Reserved_316/Cysteines/2&#039;&amp;gt;nine cysteines&amp;lt;/scene&amp;gt; at the following positions: C40, C49, C60, C72, C89, C216, C266, C380, and C395&amp;lt;ref name=&amp;quot;paper3&amp;quot;&amp;gt;PMID:18988191&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
==Additional Information==&lt;br /&gt;
As simvastatin is an active pharmaceutical ingredient in the cholesterol-lowering drug Zocor®, its efficient synthesis from lovastatin, via LovD is intensely pursued &amp;lt;ref name=&amp;quot;paper4&amp;quot;&amp;gt;PMID:19875080&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
The protein-protein interaction between LovD and the acyl carrier protein domain of LovF facilitates the highly efficient tailoring reaction during LVA biosynthesis &amp;lt;ref name=&amp;quot;paper4&amp;quot;&amp;gt;PMID:&lt;br /&gt;
17113998&amp;lt;/ref&amp;gt;. The alpha-S-methylbutyrate side chain is synthesized by the lovastatin diketide synthase (LDKS) LovF and then transferred by LovD regioselectively to the C8 hydroxyl of MJA&amp;lt;ref name=&amp;quot;paper3&amp;quot;&amp;gt;PMID:18988191&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
Among enzyme that have known structures, EstB (cephalosporin esterase), is homologous to LovD: 26% sequence identity &amp;lt;ref name=&amp;quot;paper6&amp;quot;&amp;gt;PMID:&lt;br /&gt;
11847270&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
==References==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Eric Ginter</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_316&amp;diff=1224474</id>
		<title>Sandbox Reserved 316</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_316&amp;diff=1224474"/>
		<updated>2011-04-03T22:00:29Z</updated>

		<summary type="html">&lt;p&gt;Eric Ginter: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Template:Sandbox_Reserved_BCMB307}}&lt;br /&gt;
 &amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
{{STRUCTURE_3hle |  PDB=3hle  |  SCENE=  }} &lt;br /&gt;
==Introduction==&lt;br /&gt;
[[Image:svs.jpg|200px|left|thumb|]]&#039;&#039;&#039;Simvastatin synthase&#039;&#039;&#039; (LovD) is a 46 kDa acyltransferase found in the lovastatin biosynthetic pathway and catalyzes the final step of lovastatin biosynthesis&amp;lt;ref name=&amp;quot;paper4&amp;quot;&amp;gt;PMID:&lt;br /&gt;
17113998&amp;lt;/ref&amp;gt;. Pictured here is the D5 mutant (Figure 1).&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
This enzyme is isolated from the natural product biosynthetic pathways of &#039;&#039;Aspergillus terreus&#039;&#039;, specifically the polyketide biosynthetic pathway. Simvastatin Synthase  converts the inactive monacolin J acid (&amp;lt;scene name=&#039;Sandbox_Reserved_316/Blah/3&#039;&amp;gt;MJA&amp;lt;/scene&amp;gt;) by dimethylbutyryl chloride to yield the protected form of simvastatin (Figure 2), which subsequently undergoes lactonization to yield simvastatin&amp;lt;ref name=&amp;quot;paper5&amp;quot;&amp;gt;PMID:19875080&amp;lt;/ref&amp;gt;.&lt;br /&gt;
[[Image:Sim_mja.jpg]]&lt;br /&gt;
&lt;br /&gt;
LovD can also synthesize the blockbuster drug simvastatin using MJA and a synthetic α-dimethylbutyryl thioester&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;.&lt;br /&gt;
==Exploring the structure==&lt;br /&gt;
LovD is a 413-amino acid protein predicted to have an α/β hydrolase fold based on primary sequence analysis&amp;lt;ref name=&amp;quot;paper2&amp;quot;&amp;gt;PMID:10334994&amp;lt;/ref&amp;gt;. &lt;br /&gt;
LovD has of two domains. The &amp;lt;scene name=&#039;Sandbox_Reserved_316/First_domain_1/1&#039;&amp;gt;first domain&amp;lt;/scene&amp;gt;, which consists of residues 1–92 and 204–413, is a central seven-stranded antiparallel β-sheet flanked by α-helices on either face&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;. The &amp;lt;scene name=&#039;Sandbox_Reserved_316/Second_domain_1/1&#039;&amp;gt;second domain&amp;lt;/scene&amp;gt; is smaller, consists of residues 93–203 and is primarily α-helical&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
At the core of the enzyme, there are notable loops peripheral to the active site, both in size and architecture. Upon ligand binding LovD undergoes a conformational change analogous to the closing of a catcher&#039;s mitt by these loops. This ringshaped ridge over the active site with fingers is composed of &amp;lt;scene name=&#039;Sandbox_Reserved_316/5_loops/2&#039;&amp;gt;five loops&amp;lt;/scene&amp;gt;: residues 114–125, 147–173, 243–258, 321–327, and 388–391&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
LovD has &amp;lt;scene name=&#039;Sandbox_Reserved_316/Cysteines/2&#039;&amp;gt;nine cysteines&amp;lt;/scene&amp;gt; at the following positions: C40, C49, C60, C72, C89, C216, C266, C380, and C395&amp;lt;ref name=&amp;quot;paper3&amp;quot;&amp;gt;PMID:18988191&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
==Additional Information==&lt;br /&gt;
As simvastatin is an active pharmaceutical ingredient in the cholesterol-lowering drug Zocor®, its efficient synthesis from lovastatin, via LovD is intensely pursued &amp;lt;ref name=&amp;quot;paper4&amp;quot;&amp;gt;PMID:19875080&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
The protein-protein interaction between LovD and the acyl carrier protein domain of LovF facilitates the highly efficient tailoring reaction during LVA biosynthesis &amp;lt;ref name=&amp;quot;paper4&amp;quot;&amp;gt;PMID:&lt;br /&gt;
17113998&amp;lt;/ref&amp;gt;. The alpha-S-methylbutyrate side chain is synthesized by the lovastatin diketide synthase (LDKS) LovF and then transferred by LovD regioselectively to the C8 hydroxyl of MJA&amp;lt;ref name=&amp;quot;paper3&amp;quot;&amp;gt;PMID:18988191&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
Among enzyme that have known structures, EstB (cephalosporin esterase), is homologous to LovD: 26% sequence identity &amp;lt;ref name=&amp;quot;paper6&amp;quot;&amp;gt;PMID:&lt;br /&gt;
11847270&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
==References==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Eric Ginter</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_316&amp;diff=1224471</id>
		<title>Sandbox Reserved 316</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_316&amp;diff=1224471"/>
		<updated>2011-04-03T21:50:05Z</updated>

		<summary type="html">&lt;p&gt;Eric Ginter: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Template:Sandbox_Reserved_BCMB307}}&lt;br /&gt;
 &amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
{{STRUCTURE_3hle |  PDB=3hle  |  SCENE=  }} &lt;br /&gt;
==Introduction==&lt;br /&gt;
[[Image:svs.jpg|200px|left|thumb|]]&#039;&#039;&#039;Simvastatin synthase&#039;&#039;&#039; (LovD) is a 46 kDa acyltransferase found in the lovastatin biosynthetic pathway and catalyzes the final step of lovastatin biosynthesis&amp;lt;ref name=&amp;quot;paper4&amp;quot;&amp;gt;PMID:&lt;br /&gt;
17113998&amp;lt;/ref&amp;gt;. Pictured here is the D5 mutant (Figure 1).&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
This enzyme is isolated from the natural product biosynthetic pathways of &#039;&#039;Aspergillus terreus&#039;&#039;. Simvastatin Synthase  converts the inactive monacolin J acid (&amp;lt;scene name=&#039;Sandbox_Reserved_316/Blah/3&#039;&amp;gt;MJA&amp;lt;/scene&amp;gt;) by dimethylbutyryl chloride to yield the protected form of simvastatin (Figure 2), which subsequently undergoes lactonization to yield simvastatin&amp;lt;ref name=&amp;quot;paper5&amp;quot;&amp;gt;PMID:19875080&amp;lt;/ref&amp;gt;.&lt;br /&gt;
[[Image:Sim_mja.jpg]]&lt;br /&gt;
&lt;br /&gt;
LovD can also synthesize the blockbuster drug simvastatin using MJA and a synthetic α-dimethylbutyryl thioester&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;.&lt;br /&gt;
==Exploring the structure==&lt;br /&gt;
LovD is a 413-amino acid protein predicted to have an α/β hydrolase fold based on primary sequence analysis&amp;lt;ref name=&amp;quot;paper2&amp;quot;&amp;gt;PMID:10334994&amp;lt;/ref&amp;gt;. &lt;br /&gt;
LovD has of two domains. The &amp;lt;scene name=&#039;Sandbox_Reserved_316/First_domain_1/1&#039;&amp;gt;first domain&amp;lt;/scene&amp;gt;, which consists of residues 1–92 and 204–413, is a central seven-stranded antiparallel β-sheet flanked by α-helices on either face&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;. The &amp;lt;scene name=&#039;Sandbox_Reserved_316/Second_domain_1/1&#039;&amp;gt;second domain&amp;lt;/scene&amp;gt; is smaller, consists of residues 93–203 and is primarily α-helical&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
At the core of the enzyme, there are notable loops peripheral to the active site, both in size and architecture. Upon ligand binding LovD undergoes a conformational change analogous to the closing of a catcher&#039;s mitt by these loops. This ringshaped ridge over the active site with fingers is composed of &amp;lt;scene name=&#039;Sandbox_Reserved_316/5_loops/2&#039;&amp;gt;five loops&amp;lt;/scene&amp;gt;: residues 114–125, 147–173, 243–258, 321–327, and 388–391&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
LovD has &amp;lt;scene name=&#039;Sandbox_Reserved_316/Cysteines/2&#039;&amp;gt;nine cysteines&amp;lt;/scene&amp;gt; at the following positions: C40, C49, C60, C72, C89, C216, C266, C380, and C395&amp;lt;ref name=&amp;quot;paper3&amp;quot;&amp;gt;PMID:18988191&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
==Additional Information==&lt;br /&gt;
As simvastatin is an active pharmaceutical ingredient in the cholesterol-lowering drug Zocor®, its efficient synthesis from lovastatin, via LovD is intensely pursued &amp;lt;ref name=&amp;quot;paper4&amp;quot;&amp;gt;PMID:19875080&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
The protein-protein interaction between LovD and the acyl carrier protein domain of LovF facilitates the highly efficient tailoring reaction during LVA biosynthesis &amp;lt;ref name=&amp;quot;paper4&amp;quot;&amp;gt;PMID:&lt;br /&gt;
17113998&amp;lt;/ref&amp;gt;. The alpha-S-methylbutyrate side chain is synthesized by the lovastatin diketide synthase (LDKS) LovF and then transferred by LovD regioselectively to the C8 hydroxyl of MJA&amp;lt;ref name=&amp;quot;paper3&amp;quot;&amp;gt;PMID:18988191&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
Among enzyme that have known structures, EstB (cephalosporin esterase), is homologous to LovD: 26% sequence identity &amp;lt;ref name=&amp;quot;paper6&amp;quot;&amp;gt;PMID:&lt;br /&gt;
11847270&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
==References==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Eric Ginter</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_316&amp;diff=1224135</id>
		<title>Sandbox Reserved 316</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_316&amp;diff=1224135"/>
		<updated>2011-04-02T23:46:18Z</updated>

		<summary type="html">&lt;p&gt;Eric Ginter: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Template:Sandbox_Reserved_BCMB307}}&lt;br /&gt;
 &amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
{{STRUCTURE_3hle |  PDB=3hle  |  SCENE=  }} &lt;br /&gt;
==Introduction==&lt;br /&gt;
[[Image:svs.jpg|200px|left|thumb|]]&#039;&#039;&#039;Simvastatin synthase&#039;&#039;&#039; (LovD) is a 46 kDa acyltransferase found in the lovastatin biosynthetic pathway and catalyzes the final step of lovastatin biosynthesis&amp;lt;ref name=&amp;quot;paper4&amp;quot;&amp;gt;PMID:&lt;br /&gt;
17113998&amp;lt;/ref&amp;gt;. Pictured here is the D5 mutant (Figure 1).&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
This enzyme is isolated from the natural product biosynthetic pathways of &#039;&#039;Aspergillus terreus&#039;&#039;. Simvastatin Synthase  converts the inactive monacolin J acid (&amp;lt;scene name=&#039;Sandbox_Reserved_316/Blah/3&#039;&amp;gt;MJA&amp;lt;/scene&amp;gt;) by dimethylbutyryl chloride to yield the protected form of simvastatin (Figure 2), which subsequently undergoes lactonization to yield simvastatin&amp;lt;ref name=&amp;quot;paper5&amp;quot;&amp;gt;PMID:19875080&amp;lt;/ref&amp;gt;.&lt;br /&gt;
[[Image:Sim_mja.jpg]]&lt;br /&gt;
&lt;br /&gt;
LovD can also synthesize the blockbuster drug simvastatin using MJA and a synthetic α-dimethylbutyryl thioester&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;.&lt;br /&gt;
==Exploring the structure==&lt;br /&gt;
LovD is a 413-amino acid protein predicted to have an α/β hydrolase fold based on primary sequence analysis&amp;lt;ref name=&amp;quot;paper2&amp;quot;&amp;gt;PMID:10334994&amp;lt;/ref&amp;gt;. &lt;br /&gt;
LovD has of two domains. The &amp;lt;scene name=&#039;Sandbox_Reserved_316/First_domain_1/1&#039;&amp;gt;first domain&amp;lt;/scene&amp;gt;, which consists of residues 1–92 and 204–413, is a central seven-stranded antiparallel β-sheet flanked by α-helices on either face&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;. The &amp;lt;scene name=&#039;Sandbox_Reserved_316/Second_domain_1/1&#039;&amp;gt;second domain&amp;lt;/scene&amp;gt; is smaller, consists of residues 93–203 and is primarily α-helical&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
At the core of the enzyme, there are notable loops peripheral to the active site, both in size and architecture. In LovD, these loops give the impression of a ringshaped ridge or baseball catcher’s mitt over the active site with fingers composed of &amp;lt;scene name=&#039;Sandbox_Reserved_316/5_loops/2&#039;&amp;gt;five loops&amp;lt;/scene&amp;gt;: residues 114–125, 147–173, 243–258, 321–327, and 388–391&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
LovD has &amp;lt;scene name=&#039;Sandbox_Reserved_316/Cysteines/2&#039;&amp;gt;nine cysteines&amp;lt;/scene&amp;gt; at the following positions: C40, C49, C60, C72, C89, C216, C266, C380, and C395&amp;lt;ref name=&amp;quot;paper3&amp;quot;&amp;gt;PMID:18988191&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
==Significance==&lt;br /&gt;
As simvastatin is an active pharmaceutical ingredient in the cholesterol-lowering drug Zocor®, its efficient synthesis from lovastatin, via LovD is intensely pursued &amp;lt;ref name=&amp;quot;paper4&amp;quot;&amp;gt;PMID:19875080&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
==References==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Eric Ginter</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_316&amp;diff=1224134</id>
		<title>Sandbox Reserved 316</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_316&amp;diff=1224134"/>
		<updated>2011-04-02T23:43:17Z</updated>

		<summary type="html">&lt;p&gt;Eric Ginter: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Template:Sandbox_Reserved_BCMB307}}&lt;br /&gt;
 &amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
{{STRUCTURE_3hle |  PDB=3hle  |  SCENE=  }} &lt;br /&gt;
==Introduction==&lt;br /&gt;
[[Image:svs.jpg|200px|left|thumb|]]&#039;&#039;&#039;Simvastatin synthase&#039;&#039;&#039; (LovD) is a 46 kDa acyltransferase found in the lovastatin biosynthetic pathway and catalyzes the final step of lovastatin biosynthesis&amp;lt;ref name=&amp;quot;paper4&amp;quot;&amp;gt;PMID:&lt;br /&gt;
17113998&amp;lt;/ref&amp;gt;. Pictured here is the D5 mutant (Figure 1).&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
This enzyme is isolated from the natural product biosynthetic pathways of &#039;&#039;Aspergillus terreus&#039;&#039;. Simvastatin Synthase  converts the inactive monacolin J acid (&amp;lt;scene name=&#039;Sandbox_Reserved_316/Blah/3&#039;&amp;gt;MJA&amp;lt;/scene&amp;gt;) by dimethylbutyryl chloride to yield the protected form of simvastatin (Figure 2), which subsequently undergoes lactonization to yield simvastatin&amp;lt;ref name=&amp;quot;paper5&amp;quot;&amp;gt;PMID:19875080&amp;lt;/ref&amp;gt;.&lt;br /&gt;
[[Image:Sim_mja.jpg]]&lt;br /&gt;
&lt;br /&gt;
LovD can also synthesize the blockbuster drug simvastatin using MJA and a synthetic α-dimethylbutyryl thioester&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;.&lt;br /&gt;
==Exploring the structure==&lt;br /&gt;
LovD is a 413-amino acid protein predicted to have an α/β hydrolase fold based on primary sequence analysis&amp;lt;ref name=&amp;quot;paper2&amp;quot;&amp;gt;PMID:10334994&amp;lt;/ref&amp;gt;. &lt;br /&gt;
LovD has of two domains. The &amp;lt;scene name=&#039;Sandbox_Reserved_316/First_domain_1/1&#039;&amp;gt;first domain&amp;lt;/scene&amp;gt;, which consists of residues 1–92 and 204–413, is a central seven-stranded antiparallel β-sheet flanked by α-helices on either face&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;. The &amp;lt;scene name=&#039;Sandbox_Reserved_316/Second_domain_1/1&#039;&amp;gt;second domain&amp;lt;/scene&amp;gt; is smaller, consists of residues 93–203 and is primarily α-helical&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
At the core of the enzyme, there are notable loops peripheral to the active site, both in size and architecture. In LovD, these loops give the impression of a ringshaped ridge or baseball catcher’s mitt over the active site with fingers composed of &amp;lt;scene name=&#039;Sandbox_Reserved_316/5_loops/2&#039;&amp;gt;five loops&amp;lt;/scene&amp;gt;: residues 114–125, 147–173, 243–258, 321–327, and 388–391&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
LovD has &amp;lt;scene name=&#039;Sandbox_Reserved_316/Cysteines/1&#039;&amp;gt;nine cysteines&amp;lt;/scene&amp;gt; at the following positions: C40, C49, C60, C72, C89, C216, C266, C380, and C395&amp;lt;ref name=&amp;quot;paper3&amp;quot;&amp;gt;PMID:18988191&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
==Significance==&lt;br /&gt;
As simvastatin is an active pharmaceutical ingredient in the cholesterol-lowering drug Zocor®, its efficient synthesis from lovastatin, via LovD is intensely pursued &amp;lt;ref name=&amp;quot;paper4&amp;quot;&amp;gt;PMID:19875080&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
==References==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Eric Ginter</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_316&amp;diff=1224132</id>
		<title>Sandbox Reserved 316</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_316&amp;diff=1224132"/>
		<updated>2011-04-02T23:34:03Z</updated>

		<summary type="html">&lt;p&gt;Eric Ginter: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Template:Sandbox_Reserved_BCMB307}}&lt;br /&gt;
 &amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
{{STRUCTURE_3hle |  PDB=3hle  |  SCENE=  }} &lt;br /&gt;
==Introduction==&lt;br /&gt;
[[Image:svs.jpg|200px|left|thumb|]]&#039;&#039;&#039;Simvastatin synthase&#039;&#039;&#039; (LovD) is a 46 kDa acyltransferase found in the lovastatin biosynthetic pathway and catalyzes the final step of lovastatin biosynthesis&amp;lt;ref name=&amp;quot;paper4&amp;quot;&amp;gt;PMID:&lt;br /&gt;
17113998&amp;lt;/ref&amp;gt;. Pictured here is the D5 mutant (Figure 1).&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
This enzyme is isolated from the natural product biosynthetic pathways of &#039;&#039;Aspergillus terreus&#039;&#039;. Simvastatin Synthase  converts the inactive monacolin J acid (&amp;lt;scene name=&#039;Sandbox_Reserved_316/Blah/3&#039;&amp;gt;MJA&amp;lt;/scene&amp;gt;) by dimethylbutyryl chloride to yield the protected form of simvastatin (Figure 2), which subsequently undergoes lactonization to yield simvastatin&amp;lt;ref name=&amp;quot;paper5&amp;quot;&amp;gt;PMID:19875080&amp;lt;/ref&amp;gt;.&lt;br /&gt;
[[Image:Sim_mja.jpg]]&lt;br /&gt;
&lt;br /&gt;
LovD can also synthesize the blockbuster drug simvastatin using MJA and a synthetic α-dimethylbutyryl thioester&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;.&lt;br /&gt;
==Exploring the structure==&lt;br /&gt;
LovD is a 413-amino acid protein predicted to have an α/β hydrolase fold based on primary sequence analysis&amp;lt;ref name=&amp;quot;paper2&amp;quot;&amp;gt;PMID:10334994&amp;lt;/ref&amp;gt;. &lt;br /&gt;
LovD has of two domains. The &amp;lt;scene name=&#039;Sandbox_Reserved_316/First_domain_1/1&#039;&amp;gt;first domain&amp;lt;/scene&amp;gt;, which consists of residues 1–92 and 204–413, is a central seven-stranded antiparallel β-sheet flanked by α-helices on either face&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;. The &amp;lt;scene name=&#039;Sandbox_Reserved_316/Second_domain_1/1&#039;&amp;gt;second domain&amp;lt;/scene&amp;gt; is smaller, consists of residues 93–203 and is primarily α-helical&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
At the core of the enzyme, there are notable loops peripheral to the active site, both in size and architecture. In LovD, these loops give the impression of a ringshaped ridge or baseball catcher’s mitt over the active site with fingers composed of &amp;lt;scene name=&#039;Sandbox_Reserved_316/5_loops/1&#039;&amp;gt;five loops&amp;lt;/scene&amp;gt;: residues 114–125, 147–173, 243–258, 321–327, and 388–391&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
LovD has &amp;lt;scene name=&#039;Sandbox_Reserved_316/Cysteines/1&#039;&amp;gt;nine cysteines&amp;lt;/scene&amp;gt; at the following positions: C40, C49, C60, C72, C89, C216, C266, C380, and C395&amp;lt;ref name=&amp;quot;paper3&amp;quot;&amp;gt;PMID:18988191&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
==Significance==&lt;br /&gt;
As simvastatin is an active pharmaceutical ingredient in the cholesterol-lowering drug Zocor®, its efficient synthesis from lovastatin, via LovD is intensely pursued &amp;lt;ref name=&amp;quot;paper4&amp;quot;&amp;gt;PMID:19875080&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
==References==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Eric Ginter</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_316&amp;diff=1223917</id>
		<title>Sandbox Reserved 316</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_316&amp;diff=1223917"/>
		<updated>2011-04-01T23:46:22Z</updated>

		<summary type="html">&lt;p&gt;Eric Ginter: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Template:Sandbox_Reserved_BCMB307}}&lt;br /&gt;
 &amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
{{STRUCTURE_3hle |  PDB=3hle  |  SCENE=  }} &lt;br /&gt;
==Introduction==&lt;br /&gt;
[[Image:svs.jpg|200px|left|thumb|]]&#039;&#039;&#039;Simvastatin synthase&#039;&#039;&#039; (LovD) is a 46 kDa acyltransferase found in the lovastatin biosynthetic pathway and catalyzes the final step of lovastatin biosynthesis&amp;lt;ref name=&amp;quot;paper4&amp;quot;&amp;gt;PMID:&lt;br /&gt;
17113998&amp;lt;/ref&amp;gt;. Pictured here is the D5 mutant (Figure 1).&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
This enzyme is isolated from the natural product biosynthetic pathways of &#039;&#039;Aspergillus terreus&#039;&#039;. Simvastatin Synthase  converts the inactive monacolin J acid (&amp;lt;scene name=&#039;Sandbox_Reserved_316/Blah/2&#039;&amp;gt;MJA&amp;lt;/scene&amp;gt;) by dimethylbutyryl chloride to yield the protected form of simvastatin (Figure 2), which subsequently undergoes lactonization to yield simvastatin&amp;lt;ref name=&amp;quot;paper5&amp;quot;&amp;gt;PMID:19875080&amp;lt;/ref&amp;gt;.&lt;br /&gt;
[[Image:Sim_mja.jpg]]&lt;br /&gt;
&lt;br /&gt;
LovD can also synthesize the blockbuster drug simvastatin using MJA and a synthetic α-dimethylbutyryl thioester&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;.&lt;br /&gt;
==Exploring the structure==&lt;br /&gt;
LovD is a 413-amino acid protein predicted to have an α/β hydrolase fold based on primary sequence analysis&amp;lt;ref name=&amp;quot;paper2&amp;quot;&amp;gt;PMID:10334994&amp;lt;/ref&amp;gt;. &lt;br /&gt;
LovD has of two domains. The &amp;lt;scene name=&#039;Sandbox_Reserved_316/First_domain_1/1&#039;&amp;gt;first domain&amp;lt;/scene&amp;gt;, which consists of residues 1–92 and 204–413, is a central seven-stranded antiparallel β-sheet flanked by α-helices on either face&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;. The &amp;lt;scene name=&#039;Sandbox_Reserved_316/Second_domain_1/1&#039;&amp;gt;second domain&amp;lt;/scene&amp;gt; is smaller, consists of residues 93–203 and is primarily α-helical&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
At the core of the enzyme, there are notable loops peripheral to the active site, both in size and architecture. In LovD, these loops give the impression of a ringshaped ridge or baseball catcher’s mitt over the active site with fingers composed of &amp;lt;scene name=&#039;Sandbox_Reserved_316/5_loops/1&#039;&amp;gt;five loops&amp;lt;/scene&amp;gt;: residues 114–125, 147–173, 243–258, 321–327, and 388–391&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
LovD has &amp;lt;scene name=&#039;Sandbox_Reserved_316/Cysteines/1&#039;&amp;gt;nine cysteines&amp;lt;/scene&amp;gt; at the following positions: C40, C49, C60, C72, C89, C216, C266, C380, and C395&amp;lt;ref name=&amp;quot;paper3&amp;quot;&amp;gt;PMID:18988191&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
==Significance==&lt;br /&gt;
As simvastatin is an active pharmaceutical ingredient in the cholesterol-lowering drug Zocor®, its efficient synthesis from lovastatin, via LovD is intensely pursued &amp;lt;ref name=&amp;quot;paper4&amp;quot;&amp;gt;PMID:19875080&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
==References==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Eric Ginter</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_316&amp;diff=1223915</id>
		<title>Sandbox Reserved 316</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_316&amp;diff=1223915"/>
		<updated>2011-04-01T23:44:48Z</updated>

		<summary type="html">&lt;p&gt;Eric Ginter: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Template:Sandbox_Reserved_BCMB307}}&lt;br /&gt;
 &amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
{{STRUCTURE_3hle |  PDB=3hle  |  SCENE=  }} &lt;br /&gt;
==Introduction==&lt;br /&gt;
[[Image:svs.jpg|200px|left|thumb|]]&#039;&#039;&#039;Simvastatin synthase&#039;&#039;&#039; (LovD) is a 46 kDa acyltransferase found in the lovastatin biosynthetic pathway and catalyzes the final step of lovastatin biosynthesis&amp;lt;ref name=&amp;quot;paper4&amp;quot;&amp;gt;PMID:&lt;br /&gt;
17113998&amp;lt;/ref&amp;gt;. Pictured here is the D5 mutant (Figure 1).&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
This enzyme is isolated from the natural product biosynthetic pathways of &#039;&#039;Aspergillus terreus&#039;&#039;. Simvastatin Synthase  converts the inactive monacolin J acid (&amp;lt;scene name=&#039;Sandbox_Reserved_316/Blah/2&#039;&amp;gt;MJA&amp;lt;/scene&amp;gt;) by dimethylbutyryl chloride to yield the protected form of simvastatin (Figure 2), which subsequently undergoes lactonization to yield simvastatin&amp;lt;ref name=&amp;quot;paper5&amp;quot;&amp;gt;PMID:19875080&amp;lt;/ref&amp;gt;.&lt;br /&gt;
[[Image:Sim_mja.jpg]]&lt;br /&gt;
&lt;br /&gt;
LovD can also synthesize the blockbuster drug simvastatin using MJA and a synthetic α-dimethylbutyryl thioester&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;.&lt;br /&gt;
==Exploring the structure==&lt;br /&gt;
&amp;lt;scene name=&#039;Sandbox_Reserved_316/Svs_1/1&#039;&amp;gt;TextToBeDisplayed&amp;lt;/scene&amp;gt; LovD is a 413-amino acid protein predicted to have an α/β hydrolase fold based on primary sequence analysis&amp;lt;ref name=&amp;quot;paper2&amp;quot;&amp;gt;PMID:10334994&amp;lt;/ref&amp;gt;. &lt;br /&gt;
LovD has of two domains. The &amp;lt;scene name=&#039;Sandbox_Reserved_316/First_domain_1/1&#039;&amp;gt;first domain&amp;lt;/scene&amp;gt;, which consists of residues 1–92 and 204–413, is a central seven-stranded antiparallel β-sheet flanked by α-helices on either face&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;. The &amp;lt;scene name=&#039;Sandbox_Reserved_316/Second_domain_1/1&#039;&amp;gt;second domain&amp;lt;/scene&amp;gt; is smaller, consists of residues 93–203 and is primarily α-helical&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
At the core of the enzyme, there are notable loops peripheral to the active site, both in size and architecture. In LovD, these loops give the impression of a ringshaped ridge or baseball catcher’s mitt over the active site with fingers composed of &amp;lt;scene name=&#039;Sandbox_Reserved_316/5_loops/1&#039;&amp;gt;five loops&amp;lt;/scene&amp;gt;: residues 114–125, 147–173, 243–258, 321–327, and 388–391&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
LovD has &amp;lt;scene name=&#039;Sandbox_Reserved_316/Cysteines/1&#039;&amp;gt;nine cysteines&amp;lt;/scene&amp;gt; at the following positions: C40, C49, C60, C72, C89, C216, C266, C380, and C395&amp;lt;ref name=&amp;quot;paper3&amp;quot;&amp;gt;PMID:18988191&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
==Significance==&lt;br /&gt;
As simvastatin is an active pharmaceutical ingredient in the cholesterol-lowering drug Zocor®, its efficient synthesis from lovastatin, via LovD is intensely pursued &amp;lt;ref name=&amp;quot;paper4&amp;quot;&amp;gt;PMID:19875080&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
==References==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Eric Ginter</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Simvastatin_Synthase&amp;diff=1223914</id>
		<title>Simvastatin Synthase</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Simvastatin_Synthase&amp;diff=1223914"/>
		<updated>2011-04-01T23:44:14Z</updated>

		<summary type="html">&lt;p&gt;Eric Ginter: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Template:Sandbox_Reserved_BCMB307}}&lt;br /&gt;
 &amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
{{STRUCTURE_3hle |  PDB=3hle  |  SCENE=  }} &lt;br /&gt;
==Introduction==&lt;br /&gt;
[[Image:svs.jpg|200px|left|thumb|]]&#039;&#039;&#039;Simvastatin synthase&#039;&#039;&#039; (LovD) is a 46 kDa acyltransferase found in the lovastatin biosynthetic pathway and catalyzes the final step of lovastatin biosynthesis&amp;lt;ref name=&amp;quot;paper4&amp;quot;&amp;gt;PMID:&lt;br /&gt;
17113998&amp;lt;/ref&amp;gt;. Pictured here is the D5 mutant (Figure 1).&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
This enzyme is isolated from the natural product biosynthetic pathways of &#039;&#039;Aspergillus terreus&#039;&#039;. Simvastatin Synthase  converts the inactive monacolin J acid (&amp;lt;scene name=&#039;Sandbox_Reserved_316/Blah/2&#039;&amp;gt;MJA&amp;lt;/scene&amp;gt;) by dimethylbutyryl chloride to yield the protected form of simvastatin (Figure 2), which subsequently undergoes lactonization to yield simvastatin&amp;lt;ref name=&amp;quot;paper5&amp;quot;&amp;gt;PMID:19875080&amp;lt;/ref&amp;gt;.&lt;br /&gt;
[[Image:Sim_mja.jpg]]&lt;br /&gt;
&lt;br /&gt;
LovD can also synthesize the blockbuster drug simvastatin using MJA and a synthetic α-dimethylbutyryl thioester&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;.&lt;br /&gt;
==Exploring the structure==&lt;br /&gt;
&amp;lt;scene name=&#039;Sandbox_Reserved_316/Svs_1/1&#039;&amp;gt;TextToBeDisplayed&amp;lt;/scene&amp;gt; LovD is a 413-amino acid protein predicted to have an α/β hydrolase fold based on primary sequence analysis&amp;lt;ref name=&amp;quot;paper2&amp;quot;&amp;gt;PMID:10334994&amp;lt;/ref&amp;gt;. &lt;br /&gt;
LovD has of two domains. The &amp;lt;scene name=&#039;Sandbox_Reserved_316/First_domain_1/1&#039;&amp;gt;first domain&amp;lt;/scene&amp;gt;, which consists of residues 1–92 and 204–413, is a central seven-stranded antiparallel β-sheet flanked by α-helices on either face&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;. The &amp;lt;scene name=&#039;Sandbox_Reserved_316/Second_domain_1/1&#039;&amp;gt;second domain&amp;lt;/scene&amp;gt; is smaller, consists of residues 93–203 and is primarily α-helical&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
At the core of the enzyme, there are notable loops peripheral to the active site, both in size and architecture. In LovD, these loops give the impression of a ringshaped ridge or baseball catcher’s mitt over the active site with fingers composed of &amp;lt;scene name=&#039;Sandbox_Reserved_316/5_loops/1&#039;&amp;gt;five loops&amp;lt;/scene&amp;gt;: residues 114–125, 147–173, 243–258, 321–327, and 388–391&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
LovD has &amp;lt;scene name=&#039;Sandbox_Reserved_316/Cysteines/1&#039;&amp;gt;nine cysteines&amp;lt;/scene&amp;gt; at the following positions: C40, C49, C60, C72, C89, C216, C266, C380, and C395&amp;lt;ref name=&amp;quot;paper3&amp;quot;&amp;gt;PMID:18988191&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
==Significance==&lt;br /&gt;
As simvastatin is an active pharmaceutical ingredient in the cholesterol-lowering drug Zocor®, its efficient synthesis from lovastatin, via LovD is intensely pursued &amp;lt;ref name=&amp;quot;paper4&amp;quot;&amp;gt;PMID:19875080&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
==References==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Eric Ginter</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Simvastatin_Synthase&amp;diff=1223911</id>
		<title>Simvastatin Synthase</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Simvastatin_Synthase&amp;diff=1223911"/>
		<updated>2011-04-01T23:42:54Z</updated>

		<summary type="html">&lt;p&gt;Eric Ginter: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Template:Sandbox_Reserved_BCMB307}}&lt;br /&gt;
 &amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
{{STRUCTURE_3hle |  PDB=3hle  |  SCENE=  }} &lt;br /&gt;
==Introduction==&lt;br /&gt;
[[Image:svs.jpg|300px|left|thumb|]]&#039;&#039;&#039;Simvastatin synthase&#039;&#039;&#039; (LovD) is a 46 kDa acyltransferase found in the lovastatin biosynthetic pathway and catalyzes the final step of lovastatin biosynthesis&amp;lt;ref name=&amp;quot;paper4&amp;quot;&amp;gt;PMID:&lt;br /&gt;
17113998&amp;lt;/ref&amp;gt;. Pictured here is the D5 mutant complexed with monacolin J acid (Figure 1).&lt;br /&gt;
&lt;br /&gt;
This enzyme is isolated from the natural product biosynthetic pathways of &#039;&#039;Aspergillus terreus&#039;&#039;. Simvastatin Synthase  converts the inactive monacolin J acid (&amp;lt;scene name=&#039;Sandbox_Reserved_316/Blah/2&#039;&amp;gt;MJA&amp;lt;/scene&amp;gt;) by dimethylbutyryl chloride to yield the protected form of simvastatin (Figure 2), which subsequently undergoes lactonization to yield simvastatin&amp;lt;ref name=&amp;quot;paper5&amp;quot;&amp;gt;PMID:19875080&amp;lt;/ref&amp;gt;.&lt;br /&gt;
[[Image:Sim_mja.jpg]]&lt;br /&gt;
&lt;br /&gt;
LovD can also synthesize the blockbuster drug simvastatin using MJA and a synthetic α-dimethylbutyryl thioester&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;.&lt;br /&gt;
==Exploring the structure==&lt;br /&gt;
&amp;lt;scene name=&#039;Sandbox_Reserved_316/Svs_1/1&#039;&amp;gt;TextToBeDisplayed&amp;lt;/scene&amp;gt; LovD is a 413-amino acid protein predicted to have an α/β hydrolase fold based on primary sequence analysis&amp;lt;ref name=&amp;quot;paper2&amp;quot;&amp;gt;PMID:10334994&amp;lt;/ref&amp;gt;. &lt;br /&gt;
LovD has of two domains. The &amp;lt;scene name=&#039;Sandbox_Reserved_316/First_domain_1/1&#039;&amp;gt;first domain&amp;lt;/scene&amp;gt;, which consists of residues 1–92 and 204–413, is a central seven-stranded antiparallel β-sheet flanked by α-helices on either face&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;. The &amp;lt;scene name=&#039;Sandbox_Reserved_316/Second_domain_1/1&#039;&amp;gt;second domain&amp;lt;/scene&amp;gt; is smaller, consists of residues 93–203 and is primarily α-helical&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
At the core of the enzyme, there are notable loops peripheral to the active site, both in size and architecture. In LovD, these loops give the impression of a ringshaped ridge or baseball catcher’s mitt over the active site with fingers composed of &amp;lt;scene name=&#039;Sandbox_Reserved_316/5_loops/1&#039;&amp;gt;five loops&amp;lt;/scene&amp;gt;: residues 114–125, 147–173, 243–258, 321–327, and 388–391&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
LovD has &amp;lt;scene name=&#039;Sandbox_Reserved_316/Cysteines/1&#039;&amp;gt;nine cysteines&amp;lt;/scene&amp;gt; at the following positions: C40, C49, C60, C72, C89, C216, C266, C380, and C395&amp;lt;ref name=&amp;quot;paper3&amp;quot;&amp;gt;PMID:18988191&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
==Significance==&lt;br /&gt;
As simvastatin is an active pharmaceutical ingredient in the cholesterol-lowering drug Zocor®, its efficient synthesis from lovastatin, via LovD is intensely pursued &amp;lt;ref name=&amp;quot;paper4&amp;quot;&amp;gt;PMID:19875080&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
==References==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Eric Ginter</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Simvastatin_Synthase&amp;diff=1223909</id>
		<title>Simvastatin Synthase</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Simvastatin_Synthase&amp;diff=1223909"/>
		<updated>2011-04-01T23:42:09Z</updated>

		<summary type="html">&lt;p&gt;Eric Ginter: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Template:Sandbox_Reserved_BCMB307}}&lt;br /&gt;
 &amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
{{STRUCTURE_3hle |  PDB=3hle  |  SCENE=  }} &lt;br /&gt;
==Introduction==&lt;br /&gt;
[[Image:svs.jpg|300px|left|thumb| Human]]&#039;&#039;&#039;Simvastatin synthase&#039;&#039;&#039; (LovD) is a 46 kDa acyltransferase found in the lovastatin biosynthetic pathway and catalyzes the final step of lovastatin biosynthesis&amp;lt;ref name=&amp;quot;paper4&amp;quot;&amp;gt;PMID:&lt;br /&gt;
17113998&amp;lt;/ref&amp;gt;. Pictured here is the D5 mutant complexed with monacolin J acid (Figure 1).&lt;br /&gt;
&lt;br /&gt;
This enzyme is isolated from the natural product biosynthetic pathways of &#039;&#039;Aspergillus terreus&#039;&#039;. Simvastatin Synthase  converts the inactive monacolin J acid (&amp;lt;scene name=&#039;Sandbox_Reserved_316/Blah/2&#039;&amp;gt;MJA&amp;lt;/scene&amp;gt;) by dimethylbutyryl chloride to yield the protected form of simvastatin (Figure 2), which subsequently undergoes lactonization to yield simvastatin&amp;lt;ref name=&amp;quot;paper5&amp;quot;&amp;gt;PMID:19875080&amp;lt;/ref&amp;gt;.&lt;br /&gt;
[[Image:Sim_mja.jpg]]&lt;br /&gt;
&lt;br /&gt;
LovD can also synthesize the blockbuster drug simvastatin using MJA and a synthetic α-dimethylbutyryl thioester&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;.&lt;br /&gt;
==Exploring the structure==&lt;br /&gt;
&amp;lt;scene name=&#039;Sandbox_Reserved_316/Svs_1/1&#039;&amp;gt;TextToBeDisplayed&amp;lt;/scene&amp;gt; LovD is a 413-amino acid protein predicted to have an α/β hydrolase fold based on primary sequence analysis&amp;lt;ref name=&amp;quot;paper2&amp;quot;&amp;gt;PMID:10334994&amp;lt;/ref&amp;gt;. &lt;br /&gt;
LovD has of two domains. The &amp;lt;scene name=&#039;Sandbox_Reserved_316/First_domain_1/1&#039;&amp;gt;first domain&amp;lt;/scene&amp;gt;, which consists of residues 1–92 and 204–413, is a central seven-stranded antiparallel β-sheet flanked by α-helices on either face&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;. The &amp;lt;scene name=&#039;Sandbox_Reserved_316/Second_domain_1/1&#039;&amp;gt;second domain&amp;lt;/scene&amp;gt; is smaller, consists of residues 93–203 and is primarily α-helical&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
At the core of the enzyme, there are notable loops peripheral to the active site, both in size and architecture. In LovD, these loops give the impression of a ringshaped ridge or baseball catcher’s mitt over the active site with fingers composed of &amp;lt;scene name=&#039;Sandbox_Reserved_316/5_loops/1&#039;&amp;gt;five loops&amp;lt;/scene&amp;gt;: residues 114–125, 147–173, 243–258, 321–327, and 388–391&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
LovD has &amp;lt;scene name=&#039;Sandbox_Reserved_316/Cysteines/1&#039;&amp;gt;nine cysteines&amp;lt;/scene&amp;gt; at the following positions: C40, C49, C60, C72, C89, C216, C266, C380, and C395&amp;lt;ref name=&amp;quot;paper3&amp;quot;&amp;gt;PMID:18988191&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
==Significance==&lt;br /&gt;
As simvastatin is an active pharmaceutical ingredient in the cholesterol-lowering drug Zocor®, its efficient synthesis from lovastatin, via LovD is intensely pursued &amp;lt;ref name=&amp;quot;paper4&amp;quot;&amp;gt;PMID:19875080&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
==References==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Eric Ginter</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Simvastatin_Synthase&amp;diff=1223908</id>
		<title>Simvastatin Synthase</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Simvastatin_Synthase&amp;diff=1223908"/>
		<updated>2011-04-01T23:38:15Z</updated>

		<summary type="html">&lt;p&gt;Eric Ginter: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Template:Sandbox_Reserved_BCMB307}}&lt;br /&gt;
 &amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
{{STRUCTURE_3hle |  PDB=3hle  |  SCENE=  }} &lt;br /&gt;
==Introduction==&lt;br /&gt;
{{imageframe|align=left|content= [[Image:svs.jpg]]}}&#039;&#039;&#039;Simvastatin synthase&#039;&#039;&#039; (LovD) is a 46 kDa acyltransferase found in the lovastatin biosynthetic pathway and catalyzes the final step of lovastatin biosynthesis&amp;lt;ref name=&amp;quot;paper4&amp;quot;&amp;gt;PMID:&lt;br /&gt;
17113998&amp;lt;/ref&amp;gt;. Pictured here is the D5 mutant complexed with monacolin J acid (Figure 1).&lt;br /&gt;
&lt;br /&gt;
This enzyme is isolated from the natural product biosynthetic pathways of &#039;&#039;Aspergillus terreus&#039;&#039;. Simvastatin Synthase  converts the inactive monacolin J acid (&amp;lt;scene name=&#039;Sandbox_Reserved_316/Blah/2&#039;&amp;gt;MJA&amp;lt;/scene&amp;gt;) by dimethylbutyryl chloride to yield the protected form of simvastatin (Figure 2), which subsequently undergoes lactonization to yield simvastatin&amp;lt;ref name=&amp;quot;paper5&amp;quot;&amp;gt;PMID:19875080&amp;lt;/ref&amp;gt;.&lt;br /&gt;
[[Image:Sim_mja.jpg]]&lt;br /&gt;
&lt;br /&gt;
LovD can also synthesize the blockbuster drug simvastatin using MJA and a synthetic α-dimethylbutyryl thioester&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;.&lt;br /&gt;
==Exploring the structure==&lt;br /&gt;
&amp;lt;scene name=&#039;Sandbox_Reserved_316/Svs_1/1&#039;&amp;gt;TextToBeDisplayed&amp;lt;/scene&amp;gt; LovD is a 413-amino acid protein predicted to have an α/β hydrolase fold based on primary sequence analysis&amp;lt;ref name=&amp;quot;paper2&amp;quot;&amp;gt;PMID:10334994&amp;lt;/ref&amp;gt;. &lt;br /&gt;
LovD has of two domains. The &amp;lt;scene name=&#039;Sandbox_Reserved_316/First_domain_1/1&#039;&amp;gt;first domain&amp;lt;/scene&amp;gt;, which consists of residues 1–92 and 204–413, is a central seven-stranded antiparallel β-sheet flanked by α-helices on either face&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;. The &amp;lt;scene name=&#039;Sandbox_Reserved_316/Second_domain_1/1&#039;&amp;gt;second domain&amp;lt;/scene&amp;gt; is smaller, consists of residues 93–203 and is primarily α-helical&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
At the core of the enzyme, there are notable loops peripheral to the active site, both in size and architecture. In LovD, these loops give the impression of a ringshaped ridge or baseball catcher’s mitt over the active site with fingers composed of &amp;lt;scene name=&#039;Sandbox_Reserved_316/5_loops/1&#039;&amp;gt;five loops&amp;lt;/scene&amp;gt;: residues 114–125, 147–173, 243–258, 321–327, and 388–391&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
LovD has &amp;lt;scene name=&#039;Sandbox_Reserved_316/Cysteines/1&#039;&amp;gt;nine cysteines&amp;lt;/scene&amp;gt; at the following positions: C40, C49, C60, C72, C89, C216, C266, C380, and C395&amp;lt;ref name=&amp;quot;paper3&amp;quot;&amp;gt;PMID:18988191&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
==Significance==&lt;br /&gt;
As simvastatin is an active pharmaceutical ingredient in the cholesterol-lowering drug Zocor®, its efficient synthesis from lovastatin, via LovD is intensely pursued &amp;lt;ref name=&amp;quot;paper4&amp;quot;&amp;gt;PMID:19875080&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
==References==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Eric Ginter</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Simvastatin_Synthase&amp;diff=1223905</id>
		<title>Simvastatin Synthase</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Simvastatin_Synthase&amp;diff=1223905"/>
		<updated>2011-04-01T23:35:47Z</updated>

		<summary type="html">&lt;p&gt;Eric Ginter: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Template:Sandbox_Reserved_BCMB307}}&lt;br /&gt;
 &amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
{{STRUCTURE_3hle |  PDB=3hle  |  SCENE=  }} &lt;br /&gt;
==Introduction==&lt;br /&gt;
{{imageframe|align=&amp;quot;left&amp;quot;|content= [[Image:svs.jpg]]}}&#039;&#039;&#039;Simvastatin synthase&#039;&#039;&#039; (LovD) is a 46 kDa acyltransferase found in the lovastatin biosynthetic pathway and catalyzes the final step of lovastatin biosynthesis&amp;lt;ref name=&amp;quot;paper4&amp;quot;&amp;gt;PMID:&lt;br /&gt;
17113998&amp;lt;/ref&amp;gt;. Pictured here is the D5 mutant complexed with monacolin J acid (Figure 1).&lt;br /&gt;
&lt;br /&gt;
This enzyme is isolated from the natural product biosynthetic pathways of &#039;&#039;Aspergillus terreus&#039;&#039;. Simvastatin Synthase  converts the inactive monacolin J acid (&amp;lt;scene name=&#039;Sandbox_Reserved_316/Blah/2&#039;&amp;gt;MJA&amp;lt;/scene&amp;gt;) by dimethylbutyryl chloride to yield the protected form of simvastatin (Figure 2), which subsequently undergoes lactonization to yield simvastatin&amp;lt;ref name=&amp;quot;paper5&amp;quot;&amp;gt;PMID:19875080&amp;lt;/ref&amp;gt;.&lt;br /&gt;
[[Image:Sim_mja.jpg]]&lt;br /&gt;
&lt;br /&gt;
LovD can also synthesize the blockbuster drug simvastatin using MJA and a synthetic α-dimethylbutyryl thioester&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;.&lt;br /&gt;
==Exploring the structure==&lt;br /&gt;
&amp;lt;scene name=&#039;Sandbox_Reserved_316/Svs_1/1&#039;&amp;gt;TextToBeDisplayed&amp;lt;/scene&amp;gt; LovD is a 413-amino acid protein predicted to have an α/β hydrolase fold based on primary sequence analysis&amp;lt;ref name=&amp;quot;paper2&amp;quot;&amp;gt;PMID:10334994&amp;lt;/ref&amp;gt;. &lt;br /&gt;
LovD has of two domains. The &amp;lt;scene name=&#039;Sandbox_Reserved_316/First_domain_1/1&#039;&amp;gt;first domain&amp;lt;/scene&amp;gt;, which consists of residues 1–92 and 204–413, is a central seven-stranded antiparallel β-sheet flanked by α-helices on either face&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;. The &amp;lt;scene name=&#039;Sandbox_Reserved_316/Second_domain_1/1&#039;&amp;gt;second domain&amp;lt;/scene&amp;gt; is smaller, consists of residues 93–203 and is primarily α-helical&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
At the core of the enzyme, there are notable loops peripheral to the active site, both in size and architecture. In LovD, these loops give the impression of a ringshaped ridge or baseball catcher’s mitt over the active site with fingers composed of &amp;lt;scene name=&#039;Sandbox_Reserved_316/5_loops/1&#039;&amp;gt;five loops&amp;lt;/scene&amp;gt;: residues 114–125, 147–173, 243–258, 321–327, and 388–391&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
LovD has &amp;lt;scene name=&#039;Sandbox_Reserved_316/Cysteines/1&#039;&amp;gt;nine cysteines&amp;lt;/scene&amp;gt; at the following positions: C40, C49, C60, C72, C89, C216, C266, C380, and C395&amp;lt;ref name=&amp;quot;paper3&amp;quot;&amp;gt;PMID:18988191&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
==Significance==&lt;br /&gt;
As simvastatin is an active pharmaceutical ingredient in the cholesterol-lowering drug Zocor®, its efficient synthesis from lovastatin, via LovD is intensely pursued &amp;lt;ref name=&amp;quot;paper4&amp;quot;&amp;gt;PMID:19875080&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
==References==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Eric Ginter</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Simvastatin_Synthase&amp;diff=1223902</id>
		<title>Simvastatin Synthase</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Simvastatin_Synthase&amp;diff=1223902"/>
		<updated>2011-04-01T23:32:20Z</updated>

		<summary type="html">&lt;p&gt;Eric Ginter: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Template:Sandbox_Reserved_BCMB307}}&lt;br /&gt;
 &amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
{{STRUCTURE_3hle |  PDB=3hle  |  SCENE=  }} &lt;br /&gt;
==Introduction==&lt;br /&gt;
&amp;lt;image align=&amp;quot;left&amp;quot; width=&amp;quot;650&amp;quot; height=&amp;quot;500&amp;quot; file=&amp;quot;svs.jpg&amp;quot; /&amp;gt;&#039;&#039;&#039;Simvastatin synthase&#039;&#039;&#039; (LovD) is a 46 kDa acyltransferase found in the lovastatin biosynthetic pathway and catalyzes the final step of lovastatin biosynthesis&amp;lt;ref name=&amp;quot;paper4&amp;quot;&amp;gt;PMID:&lt;br /&gt;
17113998&amp;lt;/ref&amp;gt;. Pictured here is the D5 mutant complexed with monacolin J acid (Figure 1).&lt;br /&gt;
&lt;br /&gt;
This enzyme is isolated from the natural product biosynthetic pathways of &#039;&#039;Aspergillus terreus&#039;&#039;. Simvastatin Synthase  converts the inactive monacolin J acid (&amp;lt;scene name=&#039;Sandbox_Reserved_316/Blah/2&#039;&amp;gt;MJA&amp;lt;/scene&amp;gt;) by dimethylbutyryl chloride to yield the protected form of simvastatin (Figure 2), which subsequently undergoes lactonization to yield simvastatin&amp;lt;ref name=&amp;quot;paper5&amp;quot;&amp;gt;PMID:19875080&amp;lt;/ref&amp;gt;.&lt;br /&gt;
[[Image:Sim_mja.jpg]]&lt;br /&gt;
&lt;br /&gt;
LovD can also synthesize the blockbuster drug simvastatin using MJA and a synthetic α-dimethylbutyryl thioester&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;.&lt;br /&gt;
==Exploring the structure==&lt;br /&gt;
&amp;lt;scene name=&#039;Sandbox_Reserved_316/Svs_1/1&#039;&amp;gt;TextToBeDisplayed&amp;lt;/scene&amp;gt; LovD is a 413-amino acid protein predicted to have an α/β hydrolase fold based on primary sequence analysis&amp;lt;ref name=&amp;quot;paper2&amp;quot;&amp;gt;PMID:10334994&amp;lt;/ref&amp;gt;. &lt;br /&gt;
LovD has of two domains. The &amp;lt;scene name=&#039;Sandbox_Reserved_316/First_domain_1/1&#039;&amp;gt;first domain&amp;lt;/scene&amp;gt;, which consists of residues 1–92 and 204–413, is a central seven-stranded antiparallel β-sheet flanked by α-helices on either face&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;. The &amp;lt;scene name=&#039;Sandbox_Reserved_316/Second_domain_1/1&#039;&amp;gt;second domain&amp;lt;/scene&amp;gt; is smaller, consists of residues 93–203 and is primarily α-helical&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
At the core of the enzyme, there are notable loops peripheral to the active site, both in size and architecture. In LovD, these loops give the impression of a ringshaped ridge or baseball catcher’s mitt over the active site with fingers composed of &amp;lt;scene name=&#039;Sandbox_Reserved_316/5_loops/1&#039;&amp;gt;five loops&amp;lt;/scene&amp;gt;: residues 114–125, 147–173, 243–258, 321–327, and 388–391&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
LovD has &amp;lt;scene name=&#039;Sandbox_Reserved_316/Cysteines/1&#039;&amp;gt;nine cysteines&amp;lt;/scene&amp;gt; at the following positions: C40, C49, C60, C72, C89, C216, C266, C380, and C395&amp;lt;ref name=&amp;quot;paper3&amp;quot;&amp;gt;PMID:18988191&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
==Significance==&lt;br /&gt;
As simvastatin is an active pharmaceutical ingredient in the cholesterol-lowering drug Zocor®, its efficient synthesis from lovastatin, via LovD is intensely pursued &amp;lt;ref name=&amp;quot;paper4&amp;quot;&amp;gt;PMID:19875080&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
==References==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Eric Ginter</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Simvastatin_Synthase&amp;diff=1223901</id>
		<title>Simvastatin Synthase</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Simvastatin_Synthase&amp;diff=1223901"/>
		<updated>2011-04-01T23:31:25Z</updated>

		<summary type="html">&lt;p&gt;Eric Ginter: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Template:Sandbox_Reserved_BCMB307}}&lt;br /&gt;
 &amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
{{STRUCTURE_3hle |  PDB=3hle  |  SCENE=  }} &lt;br /&gt;
==Introduction==&lt;br /&gt;
[[align=&amp;quot;left&amp;quot; Image:svs.jpg]]&#039;&#039;&#039;Simvastatin synthase&#039;&#039;&#039; (LovD) is a 46 kDa acyltransferase found in the lovastatin biosynthetic pathway and catalyzes the final step of lovastatin biosynthesis&amp;lt;ref name=&amp;quot;paper4&amp;quot;&amp;gt;PMID:&lt;br /&gt;
17113998&amp;lt;/ref&amp;gt;. Pictured here is the D5 mutant complexed with monacolin J acid (Figure 1).&lt;br /&gt;
&lt;br /&gt;
This enzyme is isolated from the natural product biosynthetic pathways of &#039;&#039;Aspergillus terreus&#039;&#039;. Simvastatin Synthase  converts the inactive monacolin J acid (&amp;lt;scene name=&#039;Sandbox_Reserved_316/Blah/2&#039;&amp;gt;MJA&amp;lt;/scene&amp;gt;) by dimethylbutyryl chloride to yield the protected form of simvastatin (Figure 2), which subsequently undergoes lactonization to yield simvastatin&amp;lt;ref name=&amp;quot;paper5&amp;quot;&amp;gt;PMID:19875080&amp;lt;/ref&amp;gt;.&lt;br /&gt;
[[Image:Sim_mja.jpg]]&lt;br /&gt;
&lt;br /&gt;
LovD can also synthesize the blockbuster drug simvastatin using MJA and a synthetic α-dimethylbutyryl thioester&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;.&lt;br /&gt;
==Exploring the structure==&lt;br /&gt;
&amp;lt;scene name=&#039;Sandbox_Reserved_316/Svs_1/1&#039;&amp;gt;TextToBeDisplayed&amp;lt;/scene&amp;gt; LovD is a 413-amino acid protein predicted to have an α/β hydrolase fold based on primary sequence analysis&amp;lt;ref name=&amp;quot;paper2&amp;quot;&amp;gt;PMID:10334994&amp;lt;/ref&amp;gt;. &lt;br /&gt;
LovD has of two domains. The &amp;lt;scene name=&#039;Sandbox_Reserved_316/First_domain_1/1&#039;&amp;gt;first domain&amp;lt;/scene&amp;gt;, which consists of residues 1–92 and 204–413, is a central seven-stranded antiparallel β-sheet flanked by α-helices on either face&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;. The &amp;lt;scene name=&#039;Sandbox_Reserved_316/Second_domain_1/1&#039;&amp;gt;second domain&amp;lt;/scene&amp;gt; is smaller, consists of residues 93–203 and is primarily α-helical&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
At the core of the enzyme, there are notable loops peripheral to the active site, both in size and architecture. In LovD, these loops give the impression of a ringshaped ridge or baseball catcher’s mitt over the active site with fingers composed of &amp;lt;scene name=&#039;Sandbox_Reserved_316/5_loops/1&#039;&amp;gt;five loops&amp;lt;/scene&amp;gt;: residues 114–125, 147–173, 243–258, 321–327, and 388–391&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
LovD has &amp;lt;scene name=&#039;Sandbox_Reserved_316/Cysteines/1&#039;&amp;gt;nine cysteines&amp;lt;/scene&amp;gt; at the following positions: C40, C49, C60, C72, C89, C216, C266, C380, and C395&amp;lt;ref name=&amp;quot;paper3&amp;quot;&amp;gt;PMID:18988191&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
==Significance==&lt;br /&gt;
As simvastatin is an active pharmaceutical ingredient in the cholesterol-lowering drug Zocor®, its efficient synthesis from lovastatin, via LovD is intensely pursued &amp;lt;ref name=&amp;quot;paper4&amp;quot;&amp;gt;PMID:19875080&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
==References==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Eric Ginter</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_316&amp;diff=1223900</id>
		<title>Sandbox Reserved 316</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_316&amp;diff=1223900"/>
		<updated>2011-04-01T23:28:25Z</updated>

		<summary type="html">&lt;p&gt;Eric Ginter: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Template:Sandbox_Reserved_BCMB307}}&lt;br /&gt;
 &amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
{{STRUCTURE_3hle |  PDB=3hle  |  SCENE=  }} &lt;br /&gt;
==Introduction==&lt;br /&gt;
[[Image:svs.jpg]]&#039;&#039;&#039;Simvastatin synthase&#039;&#039;&#039; (LovD) is a 46 kDa acyltransferase found in the lovastatin biosynthetic pathway and catalyzes the final step of lovastatin biosynthesis&amp;lt;ref name=&amp;quot;paper4&amp;quot;&amp;gt;PMID:&lt;br /&gt;
17113998&amp;lt;/ref&amp;gt;. Pictured here is the D5 mutant complexed with monacolin J acid (Figure 1).&lt;br /&gt;
&lt;br /&gt;
This enzyme is isolated from the natural product biosynthetic pathways of &#039;&#039;Aspergillus terreus&#039;&#039;. Simvastatin Synthase  converts the inactive monacolin J acid (&amp;lt;scene name=&#039;Sandbox_Reserved_316/Blah/2&#039;&amp;gt;MJA&amp;lt;/scene&amp;gt;) by dimethylbutyryl chloride to yield the protected form of simvastatin (Figure 2), which subsequently undergoes lactonization to yield simvastatin&amp;lt;ref name=&amp;quot;paper5&amp;quot;&amp;gt;PMID:19875080&amp;lt;/ref&amp;gt;.&lt;br /&gt;
[[Image:Sim_mja.jpg]]&lt;br /&gt;
&lt;br /&gt;
LovD can also synthesize the blockbuster drug simvastatin using MJA and a synthetic α-dimethylbutyryl thioester&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;.&lt;br /&gt;
==Exploring the structure==&lt;br /&gt;
&amp;lt;scene name=&#039;Sandbox_Reserved_316/Svs_1/1&#039;&amp;gt;TextToBeDisplayed&amp;lt;/scene&amp;gt; LovD is a 413-amino acid protein predicted to have an α/β hydrolase fold based on primary sequence analysis&amp;lt;ref name=&amp;quot;paper2&amp;quot;&amp;gt;PMID:10334994&amp;lt;/ref&amp;gt;. &lt;br /&gt;
LovD has of two domains. The &amp;lt;scene name=&#039;Sandbox_Reserved_316/First_domain_1/1&#039;&amp;gt;first domain&amp;lt;/scene&amp;gt;, which consists of residues 1–92 and 204–413, is a central seven-stranded antiparallel β-sheet flanked by α-helices on either face&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;. The &amp;lt;scene name=&#039;Sandbox_Reserved_316/Second_domain_1/1&#039;&amp;gt;second domain&amp;lt;/scene&amp;gt; is smaller, consists of residues 93–203 and is primarily α-helical&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
At the core of the enzyme, there are notable loops peripheral to the active site, both in size and architecture. In LovD, these loops give the impression of a ringshaped ridge or baseball catcher’s mitt over the active site with fingers composed of &amp;lt;scene name=&#039;Sandbox_Reserved_316/5_loops/1&#039;&amp;gt;five loops&amp;lt;/scene&amp;gt;: residues 114–125, 147–173, 243–258, 321–327, and 388–391&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
LovD has &amp;lt;scene name=&#039;Sandbox_Reserved_316/Cysteines/1&#039;&amp;gt;nine cysteines&amp;lt;/scene&amp;gt; at the following positions: C40, C49, C60, C72, C89, C216, C266, C380, and C395&amp;lt;ref name=&amp;quot;paper3&amp;quot;&amp;gt;PMID:18988191&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
==Significance==&lt;br /&gt;
As simvastatin is an active pharmaceutical ingredient in the cholesterol-lowering drug Zocor®, its efficient synthesis from lovastatin, via LovD is intensely pursued &amp;lt;ref name=&amp;quot;paper4&amp;quot;&amp;gt;PMID:19875080&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
==References==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Eric Ginter</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Simvastatin_Synthase&amp;diff=1223899</id>
		<title>Simvastatin Synthase</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Simvastatin_Synthase&amp;diff=1223899"/>
		<updated>2011-04-01T23:28:09Z</updated>

		<summary type="html">&lt;p&gt;Eric Ginter: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Template:Sandbox_Reserved_BCMB307}}&lt;br /&gt;
 &amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
{{STRUCTURE_3hle |  PDB=3hle  |  SCENE=  }} &lt;br /&gt;
==Introduction==&lt;br /&gt;
[[Image:svs.jpg]]&#039;&#039;&#039;Simvastatin synthase&#039;&#039;&#039; (LovD) is a 46 kDa acyltransferase found in the lovastatin biosynthetic pathway and catalyzes the final step of lovastatin biosynthesis&amp;lt;ref name=&amp;quot;paper4&amp;quot;&amp;gt;PMID:&lt;br /&gt;
17113998&amp;lt;/ref&amp;gt;. Pictured here is the D5 mutant complexed with monacolin J acid (Figure 1).&lt;br /&gt;
&lt;br /&gt;
This enzyme is isolated from the natural product biosynthetic pathways of &#039;&#039;Aspergillus terreus&#039;&#039;. Simvastatin Synthase  converts the inactive monacolin J acid (&amp;lt;scene name=&#039;Sandbox_Reserved_316/Blah/2&#039;&amp;gt;MJA&amp;lt;/scene&amp;gt;) by dimethylbutyryl chloride to yield the protected form of simvastatin (Figure 2), which subsequently undergoes lactonization to yield simvastatin&amp;lt;ref name=&amp;quot;paper5&amp;quot;&amp;gt;PMID:19875080&amp;lt;/ref&amp;gt;.&lt;br /&gt;
[[Image:Sim_mja.jpg]]&lt;br /&gt;
&lt;br /&gt;
LovD can also synthesize the blockbuster drug simvastatin using MJA and a synthetic α-dimethylbutyryl thioester&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;.&lt;br /&gt;
==Exploring the structure==&lt;br /&gt;
&amp;lt;scene name=&#039;Sandbox_Reserved_316/Svs_1/1&#039;&amp;gt;TextToBeDisplayed&amp;lt;/scene&amp;gt; LovD is a 413-amino acid protein predicted to have an α/β hydrolase fold based on primary sequence analysis&amp;lt;ref name=&amp;quot;paper2&amp;quot;&amp;gt;PMID:10334994&amp;lt;/ref&amp;gt;. &lt;br /&gt;
LovD has of two domains. The &amp;lt;scene name=&#039;Sandbox_Reserved_316/First_domain_1/1&#039;&amp;gt;first domain&amp;lt;/scene&amp;gt;, which consists of residues 1–92 and 204–413, is a central seven-stranded antiparallel β-sheet flanked by α-helices on either face&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;. The &amp;lt;scene name=&#039;Sandbox_Reserved_316/Second_domain_1/1&#039;&amp;gt;second domain&amp;lt;/scene&amp;gt; is smaller, consists of residues 93–203 and is primarily α-helical&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
At the core of the enzyme, there are notable loops peripheral to the active site, both in size and architecture. In LovD, these loops give the impression of a ringshaped ridge or baseball catcher’s mitt over the active site with fingers composed of &amp;lt;scene name=&#039;Sandbox_Reserved_316/5_loops/1&#039;&amp;gt;five loops&amp;lt;/scene&amp;gt;: residues 114–125, 147–173, 243–258, 321–327, and 388–391&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
LovD has &amp;lt;scene name=&#039;Sandbox_Reserved_316/Cysteines/1&#039;&amp;gt;nine cysteines&amp;lt;/scene&amp;gt; at the following positions: C40, C49, C60, C72, C89, C216, C266, C380, and C395&amp;lt;ref name=&amp;quot;paper3&amp;quot;&amp;gt;PMID:18988191&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
==Significance==&lt;br /&gt;
As simvastatin is an active pharmaceutical ingredient in the cholesterol-lowering drug Zocor®, its efficient synthesis from lovastatin, via LovD is intensely pursued &amp;lt;ref name=&amp;quot;paper4&amp;quot;&amp;gt;PMID:19875080&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
==References==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Eric Ginter</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=File:Svs.jpg&amp;diff=1223898</id>
		<title>File:Svs.jpg</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=File:Svs.jpg&amp;diff=1223898"/>
		<updated>2011-04-01T23:27:15Z</updated>

		<summary type="html">&lt;p&gt;Eric Ginter: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&lt;/div&gt;</summary>
		<author><name>Eric Ginter</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_316&amp;diff=1223897</id>
		<title>Sandbox Reserved 316</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_316&amp;diff=1223897"/>
		<updated>2011-04-01T23:24:34Z</updated>

		<summary type="html">&lt;p&gt;Eric Ginter: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Template:Sandbox_Reserved_BCMB307}}&lt;br /&gt;
 &amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
{{STRUCTURE_3hle |  PDB=3hle  |  SCENE=  }} &lt;br /&gt;
==Introduction==&lt;br /&gt;
[[Image:svs_1.jpg]]&#039;&#039;&#039;Simvastatin synthase&#039;&#039;&#039; (LovD) is a 46 kDa acyltransferase found in the lovastatin biosynthetic pathway and catalyzes the final step of lovastatin biosynthesis&amp;lt;ref name=&amp;quot;paper4&amp;quot;&amp;gt;PMID:&lt;br /&gt;
17113998&amp;lt;/ref&amp;gt;. Pictured here is the D5 mutant complexed with monacolin J acid (Figure 1).&lt;br /&gt;
&lt;br /&gt;
This enzyme is isolated from the natural product biosynthetic pathways of &#039;&#039;Aspergillus terreus&#039;&#039;. Simvastatin Synthase  converts the inactive monacolin J acid (&amp;lt;scene name=&#039;Sandbox_Reserved_316/Blah/2&#039;&amp;gt;MJA&amp;lt;/scene&amp;gt;) by dimethylbutyryl chloride to yield the protected form of simvastatin (Figure 2), which subsequently undergoes lactonization to yield simvastatin&amp;lt;ref name=&amp;quot;paper5&amp;quot;&amp;gt;PMID:19875080&amp;lt;/ref&amp;gt;.&lt;br /&gt;
[[Image:Sim_mja.jpg]]&lt;br /&gt;
&lt;br /&gt;
LovD can also synthesize the blockbuster drug simvastatin using MJA and a synthetic α-dimethylbutyryl thioester&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;.&lt;br /&gt;
==Exploring the structure==&lt;br /&gt;
&amp;lt;scene name=&#039;Sandbox_Reserved_316/Svs_1/1&#039;&amp;gt;TextToBeDisplayed&amp;lt;/scene&amp;gt; LovD is a 413-amino acid protein predicted to have an α/β hydrolase fold based on primary sequence analysis&amp;lt;ref name=&amp;quot;paper2&amp;quot;&amp;gt;PMID:10334994&amp;lt;/ref&amp;gt;. &lt;br /&gt;
LovD has of two domains. The &amp;lt;scene name=&#039;Sandbox_Reserved_316/First_domain_1/1&#039;&amp;gt;first domain&amp;lt;/scene&amp;gt;, which consists of residues 1–92 and 204–413, is a central seven-stranded antiparallel β-sheet flanked by α-helices on either face&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;. The &amp;lt;scene name=&#039;Sandbox_Reserved_316/Second_domain_1/1&#039;&amp;gt;second domain&amp;lt;/scene&amp;gt; is smaller, consists of residues 93–203 and is primarily α-helical&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
At the core of the enzyme, there are notable loops peripheral to the active site, both in size and architecture. In LovD, these loops give the impression of a ringshaped ridge or baseball catcher’s mitt over the active site with fingers composed of &amp;lt;scene name=&#039;Sandbox_Reserved_316/5_loops/1&#039;&amp;gt;five loops&amp;lt;/scene&amp;gt;: residues 114–125, 147–173, 243–258, 321–327, and 388–391&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
LovD has &amp;lt;scene name=&#039;Sandbox_Reserved_316/Cysteines/1&#039;&amp;gt;nine cysteines&amp;lt;/scene&amp;gt; at the following positions: C40, C49, C60, C72, C89, C216, C266, C380, and C395&amp;lt;ref name=&amp;quot;paper3&amp;quot;&amp;gt;PMID:18988191&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
==Significance==&lt;br /&gt;
As simvastatin is an active pharmaceutical ingredient in the cholesterol-lowering drug Zocor®, its efficient synthesis from lovastatin, via LovD is intensely pursued &amp;lt;ref name=&amp;quot;paper4&amp;quot;&amp;gt;PMID:19875080&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
==References==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Eric Ginter</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_316&amp;diff=1223894</id>
		<title>Sandbox Reserved 316</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_316&amp;diff=1223894"/>
		<updated>2011-04-01T23:20:39Z</updated>

		<summary type="html">&lt;p&gt;Eric Ginter: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Template:Sandbox_Reserved_BCMB307}}&lt;br /&gt;
 &amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
{{STRUCTURE_3hle |  PDB=3hle  |  SCENE=  }} &lt;br /&gt;
==Introduction==&lt;br /&gt;
{{STRUCTURE_3hle |  PDB=3hle  |  SCENE=Svs_1 }}&#039;&#039;&#039;Simvastatin synthase&#039;&#039;&#039; (LovD) is a 46 kDa acyltransferase found in the lovastatin biosynthetic pathway and catalyzes the final step of lovastatin biosynthesis&amp;lt;ref name=&amp;quot;paper4&amp;quot;&amp;gt;PMID:&lt;br /&gt;
17113998&amp;lt;/ref&amp;gt;. Pictured here is the D5 mutant complexed with monacolin J acid (Figure 1).&lt;br /&gt;
&lt;br /&gt;
This enzyme is isolated from the natural product biosynthetic pathways of &#039;&#039;Aspergillus terreus&#039;&#039;. Simvastatin Synthase  converts the inactive monacolin J acid (&amp;lt;scene name=&#039;Sandbox_Reserved_316/Blah/2&#039;&amp;gt;MJA&amp;lt;/scene&amp;gt;) by dimethylbutyryl chloride to yield the protected form of simvastatin (Figure 2), which subsequently undergoes lactonization to yield simvastatin&amp;lt;ref name=&amp;quot;paper5&amp;quot;&amp;gt;PMID:19875080&amp;lt;/ref&amp;gt;.&lt;br /&gt;
[[Image:Sim_mja.jpg]]&lt;br /&gt;
&lt;br /&gt;
LovD can also synthesize the blockbuster drug simvastatin using MJA and a synthetic α-dimethylbutyryl thioester&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;.&lt;br /&gt;
==Exploring the structure==&lt;br /&gt;
&amp;lt;scene name=&#039;Sandbox_Reserved_316/Svs_1/1&#039;&amp;gt;TextToBeDisplayed&amp;lt;/scene&amp;gt; LovD is a 413-amino acid protein predicted to have an α/β hydrolase fold based on primary sequence analysis&amp;lt;ref name=&amp;quot;paper2&amp;quot;&amp;gt;PMID:10334994&amp;lt;/ref&amp;gt;. &lt;br /&gt;
LovD has of two domains. The &amp;lt;scene name=&#039;Sandbox_Reserved_316/First_domain_1/1&#039;&amp;gt;first domain&amp;lt;/scene&amp;gt;, which consists of residues 1–92 and 204–413, is a central seven-stranded antiparallel β-sheet flanked by α-helices on either face&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;. The &amp;lt;scene name=&#039;Sandbox_Reserved_316/Second_domain_1/1&#039;&amp;gt;second domain&amp;lt;/scene&amp;gt; is smaller, consists of residues 93–203 and is primarily α-helical&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
At the core of the enzyme, there are notable loops peripheral to the active site, both in size and architecture. In LovD, these loops give the impression of a ringshaped ridge or baseball catcher’s mitt over the active site with fingers composed of &amp;lt;scene name=&#039;Sandbox_Reserved_316/5_loops/1&#039;&amp;gt;five loops&amp;lt;/scene&amp;gt;: residues 114–125, 147–173, 243–258, 321–327, and 388–391&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
LovD has &amp;lt;scene name=&#039;Sandbox_Reserved_316/Cysteines/1&#039;&amp;gt;nine cysteines&amp;lt;/scene&amp;gt; at the following positions: C40, C49, C60, C72, C89, C216, C266, C380, and C395&amp;lt;ref name=&amp;quot;paper3&amp;quot;&amp;gt;PMID:18988191&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
==Significance==&lt;br /&gt;
As simvastatin is an active pharmaceutical ingredient in the cholesterol-lowering drug Zocor®, its efficient synthesis from lovastatin, via LovD is intensely pursued &amp;lt;ref name=&amp;quot;paper4&amp;quot;&amp;gt;PMID:19875080&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
==References==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Eric Ginter</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_316&amp;diff=1223893</id>
		<title>Sandbox Reserved 316</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_316&amp;diff=1223893"/>
		<updated>2011-04-01T23:19:23Z</updated>

		<summary type="html">&lt;p&gt;Eric Ginter: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Template:Sandbox_Reserved_BCMB307}}&lt;br /&gt;
 &amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
{{STRUCTURE_3hle |  PDB=3hle  |  SCENE=  }} &lt;br /&gt;
==Introduction==&lt;br /&gt;
&#039;&#039;&#039;Simvastatin synthase&#039;&#039;&#039; (LovD) is a 46 kDa acyltransferase found in the lovastatin biosynthetic pathway and catalyzes the final step of lovastatin biosynthesis&amp;lt;ref name=&amp;quot;paper4&amp;quot;&amp;gt;PMID:&lt;br /&gt;
17113998&amp;lt;/ref&amp;gt;. Pictured here is the D5 mutant complexed with monacolin J acid (Figure 1).&lt;br /&gt;
&lt;br /&gt;
This enzyme is isolated from the natural product biosynthetic pathways of &#039;&#039;Aspergillus terreus&#039;&#039;. Simvastatin Synthase  converts the inactive monacolin J acid (&amp;lt;scene name=&#039;Sandbox_Reserved_316/Blah/2&#039;&amp;gt;MJA&amp;lt;/scene&amp;gt;) by dimethylbutyryl chloride to yield the protected form of simvastatin (Figure 2), which subsequently undergoes lactonization to yield simvastatin&amp;lt;ref name=&amp;quot;paper5&amp;quot;&amp;gt;PMID:19875080&amp;lt;/ref&amp;gt;.&lt;br /&gt;
[[Image:Sim_mja.jpg]]&lt;br /&gt;
&lt;br /&gt;
LovD can also synthesize the blockbuster drug simvastatin using MJA and a synthetic α-dimethylbutyryl thioester&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;.&lt;br /&gt;
==Exploring the structure==&lt;br /&gt;
&amp;lt;scene name=&#039;Sandbox_Reserved_316/Svs_1/1&#039;&amp;gt;TextToBeDisplayed&amp;lt;/scene&amp;gt; LovD is a 413-amino acid protein predicted to have an α/β hydrolase fold based on primary sequence analysis&amp;lt;ref name=&amp;quot;paper2&amp;quot;&amp;gt;PMID:10334994&amp;lt;/ref&amp;gt;. &lt;br /&gt;
LovD has of two domains. The &amp;lt;scene name=&#039;Sandbox_Reserved_316/First_domain_1/1&#039;&amp;gt;first domain&amp;lt;/scene&amp;gt;, which consists of residues 1–92 and 204–413, is a central seven-stranded antiparallel β-sheet flanked by α-helices on either face&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;. The &amp;lt;scene name=&#039;Sandbox_Reserved_316/Second_domain_1/1&#039;&amp;gt;second domain&amp;lt;/scene&amp;gt; is smaller, consists of residues 93–203 and is primarily α-helical&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
At the core of the enzyme, there are notable loops peripheral to the active site, both in size and architecture. In LovD, these loops give the impression of a ringshaped ridge or baseball catcher’s mitt over the active site with fingers composed of &amp;lt;scene name=&#039;Sandbox_Reserved_316/5_loops/1&#039;&amp;gt;five loops&amp;lt;/scene&amp;gt;: residues 114–125, 147–173, 243–258, 321–327, and 388–391&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
LovD has &amp;lt;scene name=&#039;Sandbox_Reserved_316/Cysteines/1&#039;&amp;gt;nine cysteines&amp;lt;/scene&amp;gt; at the following positions: C40, C49, C60, C72, C89, C216, C266, C380, and C395&amp;lt;ref name=&amp;quot;paper3&amp;quot;&amp;gt;PMID:18988191&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
==Significance==&lt;br /&gt;
As simvastatin is an active pharmaceutical ingredient in the cholesterol-lowering drug Zocor®, its efficient synthesis from lovastatin, via LovD is intensely pursued &amp;lt;ref name=&amp;quot;paper4&amp;quot;&amp;gt;PMID:19875080&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
==References==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Eric Ginter</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_316&amp;diff=1223891</id>
		<title>Sandbox Reserved 316</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_316&amp;diff=1223891"/>
		<updated>2011-04-01T23:06:58Z</updated>

		<summary type="html">&lt;p&gt;Eric Ginter: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Template:Sandbox_Reserved_BCMB307}}&lt;br /&gt;
 &amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
{{STRUCTURE_3hle |  PDB=3hle  |  SCENE=  }} &lt;br /&gt;
==Introduction==&lt;br /&gt;
&#039;&#039;&#039;Simvastatin synthase&#039;&#039;&#039; (LovD) is a 46 kDa acyltransferase found in the lovastatin biosynthetic pathway and catalyzes the final step of lovastatin biosynthesis&amp;lt;ref name=&amp;quot;paper4&amp;quot;&amp;gt;PMID:&lt;br /&gt;
17113998&amp;lt;/ref&amp;gt;. Pictured here is the D5 mutant complexed with monacolin J acid (Figure 1).&lt;br /&gt;
&lt;br /&gt;
This enzyme is isolated from the natural product biosynthetic pathways of &#039;&#039;Aspergillus terreus&#039;&#039;. Simvastatin Synthase  converts the inactive monacolin J acid (&amp;lt;scene name=&#039;Sandbox_Reserved_316/Blah/2&#039;&amp;gt;MJA&amp;lt;/scene&amp;gt;) by dimethylbutyryl chloride to yield the protected form of simvastatin (Figure 2), which subsequently undergoes lactonization to yield simvastatin&amp;lt;ref name=&amp;quot;paper5&amp;quot;&amp;gt;PMID:19875080&amp;lt;/ref&amp;gt;.&lt;br /&gt;
[[Image:Sim_mja.jpg]]&lt;br /&gt;
&lt;br /&gt;
LovD can also synthesize the blockbuster drug simvastatin using MJA and a synthetic α-dimethylbutyryl thioester&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;.&lt;br /&gt;
==Exploring the structure==&lt;br /&gt;
LovD is a 413-amino acid protein predicted to have an α/β hydrolase fold based on primary sequence analysis&amp;lt;ref name=&amp;quot;paper2&amp;quot;&amp;gt;PMID:10334994&amp;lt;/ref&amp;gt;. &lt;br /&gt;
LovD has of two domains. The &amp;lt;scene name=&#039;Sandbox_Reserved_316/First_domain_1/1&#039;&amp;gt;first domain&amp;lt;/scene&amp;gt;, which consists of residues 1–92 and 204–413, is a central seven-stranded antiparallel β-sheet flanked by α-helices on either face&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;. The &amp;lt;scene name=&#039;Sandbox_Reserved_316/Second_domain_1/1&#039;&amp;gt;second domain&amp;lt;/scene&amp;gt; is smaller, consists of residues 93–203 and is primarily α-helical&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
At the core of the enzyme, there are notable loops peripheral to the active site, both in size and architecture. In LovD, these loops give the impression of a ringshaped ridge or baseball catcher’s mitt over the active site with fingers composed of &amp;lt;scene name=&#039;Sandbox_Reserved_316/5_loops/1&#039;&amp;gt;five loops&amp;lt;/scene&amp;gt;: residues 114–125, 147–173, 243–258, 321–327, and 388–391&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
LovD has &amp;lt;scene name=&#039;Sandbox_Reserved_316/Cysteines/1&#039;&amp;gt;nine cysteines&amp;lt;/scene&amp;gt; at the following positions: C40, C49, C60, C72, C89, C216, C266, C380, and C395&amp;lt;ref name=&amp;quot;paper3&amp;quot;&amp;gt;PMID:18988191&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
==Significance==&lt;br /&gt;
As simvastatin is an active pharmaceutical ingredient in the cholesterol-lowering drug Zocor®, its efficient synthesis from lovastatin, via LovD is intensely pursued &amp;lt;ref name=&amp;quot;paper4&amp;quot;&amp;gt;PMID:19875080&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
==References==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Eric Ginter</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=File:Sim_mja.jpg&amp;diff=1223890</id>
		<title>File:Sim mja.jpg</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=File:Sim_mja.jpg&amp;diff=1223890"/>
		<updated>2011-04-01T23:06:39Z</updated>

		<summary type="html">&lt;p&gt;Eric Ginter: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;== Licensing ==&lt;br /&gt;
{{PD-self}}&lt;/div&gt;</summary>
		<author><name>Eric Ginter</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_316&amp;diff=1223886</id>
		<title>Sandbox Reserved 316</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_316&amp;diff=1223886"/>
		<updated>2011-04-01T23:01:25Z</updated>

		<summary type="html">&lt;p&gt;Eric Ginter: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Template:Sandbox_Reserved_BCMB307}}&lt;br /&gt;
 &amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
{{STRUCTURE_3hle |  PDB=3hle  |  SCENE=  }} &lt;br /&gt;
==Introduction==&lt;br /&gt;
&#039;&#039;&#039;Simvastatin synthase&#039;&#039;&#039; (LovD) is a 46 kDa acyltransferase found in the lovastatin biosynthetic pathway and catalyzes the final step of lovastatin biosynthesis&amp;lt;ref name=&amp;quot;paper4&amp;quot;&amp;gt;PMID:&lt;br /&gt;
17113998&amp;lt;/ref&amp;gt;. Pictured here is the D5 mutant complexed with monacolin J acid (Figure 1).&lt;br /&gt;
&lt;br /&gt;
This enzyme is isolated from the natural product biosynthetic pathways of &#039;&#039;Aspergillus terreus&#039;&#039;. Simvastatin Synthase  converts the inactive monacolin J acid (&amp;lt;scene name=&#039;Sandbox_Reserved_316/Blah/2&#039;&amp;gt;MJA&amp;lt;/scene&amp;gt;) by dimethylbutyryl chloride to yield the protected form of simvastatin (Figure 2), which subsequently undergoes lactonization to yield simvastatin&amp;lt;ref name=&amp;quot;paper5&amp;quot;&amp;gt;PMID:19875080&amp;lt;/ref&amp;gt;.&lt;br /&gt;
[[Image:MJA_mech.png]]&lt;br /&gt;
&lt;br /&gt;
LovD can also synthesize the blockbuster drug simvastatin using MJA and a synthetic α-dimethylbutyryl thioester&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;.&lt;br /&gt;
==Exploring the structure==&lt;br /&gt;
LovD is a 413-amino acid protein predicted to have an α/β hydrolase fold based on primary sequence analysis&amp;lt;ref name=&amp;quot;paper2&amp;quot;&amp;gt;PMID:10334994&amp;lt;/ref&amp;gt;. &lt;br /&gt;
LovD has of two domains. The &amp;lt;scene name=&#039;Sandbox_Reserved_316/First_domain_1/1&#039;&amp;gt;first domain&amp;lt;/scene&amp;gt;, which consists of residues 1–92 and 204–413, is a central seven-stranded antiparallel β-sheet flanked by α-helices on either face&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;. The &amp;lt;scene name=&#039;Sandbox_Reserved_316/Second_domain_1/1&#039;&amp;gt;second domain&amp;lt;/scene&amp;gt; is smaller, consists of residues 93–203 and is primarily α-helical&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
At the core of the enzyme, there are notable loops peripheral to the active site, both in size and architecture. In LovD, these loops give the impression of a ringshaped ridge or baseball catcher’s mitt over the active site with fingers composed of &amp;lt;scene name=&#039;Sandbox_Reserved_316/5_loops/1&#039;&amp;gt;five loops&amp;lt;/scene&amp;gt;: residues 114–125, 147–173, 243–258, 321–327, and 388–391&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
LovD has &amp;lt;scene name=&#039;Sandbox_Reserved_316/Cysteines/1&#039;&amp;gt;nine cysteines&amp;lt;/scene&amp;gt; at the following positions: C40, C49, C60, C72, C89, C216, C266, C380, and C395&amp;lt;ref name=&amp;quot;paper3&amp;quot;&amp;gt;PMID:18988191&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
==Significance==&lt;br /&gt;
As simvastatin is an active pharmaceutical ingredient in the cholesterol-lowering drug Zocor®, its efficient synthesis from lovastatin, via LovD is intensely pursued &amp;lt;ref name=&amp;quot;paper4&amp;quot;&amp;gt;PMID:19875080&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
==References==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Eric Ginter</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_316&amp;diff=1223885</id>
		<title>Sandbox Reserved 316</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_316&amp;diff=1223885"/>
		<updated>2011-04-01T23:00:30Z</updated>

		<summary type="html">&lt;p&gt;Eric Ginter: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Template:Sandbox_Reserved_BCMB307}}&lt;br /&gt;
 &amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
{{STRUCTURE_3hle |  PDB=3hle  |  SCENE=  }} &lt;br /&gt;
==Introduction==&lt;br /&gt;
&#039;&#039;&#039;Simvastatin synthase&#039;&#039;&#039; (LovD) is a 46 kDa acyltransferase found in the lovastatin biosynthetic pathway and catalyzes the final step of lovastatin biosynthesis&amp;lt;ref name=&amp;quot;paper4&amp;quot;&amp;gt;PMID:&lt;br /&gt;
17113998&amp;lt;/ref&amp;gt;. Pictured here is the D5 mutant complexed with monacolin J acid (Figure 1).&lt;br /&gt;
&lt;br /&gt;
This enzyme is isolated from the natural product biosynthetic pathways of &#039;&#039;Aspergillus terreus&#039;&#039;. Simvastatin Synthase  converts the inactive monacolin J acid (&amp;lt;scene name=&#039;Sandbox_Reserved_316/Blah/2&#039;&amp;gt;MJA&amp;lt;/scene&amp;gt;) by dimethylbutyryl chloride to yield the protected form of simvastatin (Figure 2), which subsequently undergoes lactonization to yield simvastatin&amp;lt;ref name=&amp;quot;paper5&amp;quot;&amp;gt;PMID:19875080&amp;lt;/ref&amp;gt;.&lt;br /&gt;
{Image:MJA_mech.png}&lt;br /&gt;
&lt;br /&gt;
LovD can also synthesize the blockbuster drug simvastatin using MJA and a synthetic α-dimethylbutyryl thioester&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;.&lt;br /&gt;
==Exploring the structure==&lt;br /&gt;
LovD is a 413-amino acid protein predicted to have an α/β hydrolase fold based on primary sequence analysis&amp;lt;ref name=&amp;quot;paper2&amp;quot;&amp;gt;PMID:10334994&amp;lt;/ref&amp;gt;. &lt;br /&gt;
LovD has of two domains. The &amp;lt;scene name=&#039;Sandbox_Reserved_316/First_domain_1/1&#039;&amp;gt;first domain&amp;lt;/scene&amp;gt;, which consists of residues 1–92 and 204–413, is a central seven-stranded antiparallel β-sheet flanked by α-helices on either face&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;. The &amp;lt;scene name=&#039;Sandbox_Reserved_316/Second_domain_1/1&#039;&amp;gt;second domain&amp;lt;/scene&amp;gt; is smaller, consists of residues 93–203 and is primarily α-helical&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
At the core of the enzyme, there are notable loops peripheral to the active site, both in size and architecture. In LovD, these loops give the impression of a ringshaped ridge or baseball catcher’s mitt over the active site with fingers composed of &amp;lt;scene name=&#039;Sandbox_Reserved_316/5_loops/1&#039;&amp;gt;five loops&amp;lt;/scene&amp;gt;: residues 114–125, 147–173, 243–258, 321–327, and 388–391&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
LovD has &amp;lt;scene name=&#039;Sandbox_Reserved_316/Cysteines/1&#039;&amp;gt;nine cysteines&amp;lt;/scene&amp;gt; at the following positions: C40, C49, C60, C72, C89, C216, C266, C380, and C395&amp;lt;ref name=&amp;quot;paper3&amp;quot;&amp;gt;PMID:18988191&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
==Significance==&lt;br /&gt;
As simvastatin is an active pharmaceutical ingredient in the cholesterol-lowering drug Zocor®, its efficient synthesis from lovastatin, via LovD is intensely pursued &amp;lt;ref name=&amp;quot;paper4&amp;quot;&amp;gt;PMID:19875080&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
==References==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Eric Ginter</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_316&amp;diff=1223883</id>
		<title>Sandbox Reserved 316</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_316&amp;diff=1223883"/>
		<updated>2011-04-01T22:58:57Z</updated>

		<summary type="html">&lt;p&gt;Eric Ginter: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Template:Sandbox_Reserved_BCMB307}}&lt;br /&gt;
 &amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
{{STRUCTURE_3hle |  PDB=3hle  |  SCENE=  }} &lt;br /&gt;
==Introduction==&lt;br /&gt;
&#039;&#039;&#039;Simvastatin synthase&#039;&#039;&#039; (LovD) is a 46 kDa acyltransferase found in the lovastatin biosynthetic pathway and catalyzes the final step of lovastatin biosynthesis&amp;lt;ref name=&amp;quot;paper4&amp;quot;&amp;gt;PMID:&lt;br /&gt;
17113998&amp;lt;/ref&amp;gt;. Pictured here is the D5 mutant complexed with monacolin J acid (Figure 1).&lt;br /&gt;
&lt;br /&gt;
This enzyme is isolated from the natural product biosynthetic pathways of &#039;&#039;Aspergillus terreus&#039;&#039;. Simvastatin Synthase  converts the inactive monacolin J acid (&amp;lt;scene name=&#039;Sandbox_Reserved_316/Blah/2&#039;&amp;gt;MJA&amp;lt;/scene&amp;gt;) by dimethylbutyryl chloride to yield the protected form of simvastatin (Figure 2), which subsequently undergoes lactonization to yield simvastatin&amp;lt;ref name=&amp;quot;paper5&amp;quot;&amp;gt;PMID:19875080&amp;lt;/ref&amp;gt;.&lt;br /&gt;
{{Image:MJA mech.png}}&lt;br /&gt;
&lt;br /&gt;
LovD can also synthesize the blockbuster drug simvastatin using MJA and a synthetic α-dimethylbutyryl thioester&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;.&lt;br /&gt;
==Exploring the structure==&lt;br /&gt;
LovD is a 413-amino acid protein predicted to have an α/β hydrolase fold based on primary sequence analysis&amp;lt;ref name=&amp;quot;paper2&amp;quot;&amp;gt;PMID:10334994&amp;lt;/ref&amp;gt;. &lt;br /&gt;
LovD has of two domains. The &amp;lt;scene name=&#039;Sandbox_Reserved_316/First_domain_1/1&#039;&amp;gt;first domain&amp;lt;/scene&amp;gt;, which consists of residues 1–92 and 204–413, is a central seven-stranded antiparallel β-sheet flanked by α-helices on either face&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;. The &amp;lt;scene name=&#039;Sandbox_Reserved_316/Second_domain_1/1&#039;&amp;gt;second domain&amp;lt;/scene&amp;gt; is smaller, consists of residues 93–203 and is primarily α-helical&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
At the core of the enzyme, there are notable loops peripheral to the active site, both in size and architecture. In LovD, these loops give the impression of a ringshaped ridge or baseball catcher’s mitt over the active site with fingers composed of &amp;lt;scene name=&#039;Sandbox_Reserved_316/5_loops/1&#039;&amp;gt;five loops&amp;lt;/scene&amp;gt;: residues 114–125, 147–173, 243–258, 321–327, and 388–391&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
LovD has &amp;lt;scene name=&#039;Sandbox_Reserved_316/Cysteines/1&#039;&amp;gt;nine cysteines&amp;lt;/scene&amp;gt; at the following positions: C40, C49, C60, C72, C89, C216, C266, C380, and C395&amp;lt;ref name=&amp;quot;paper3&amp;quot;&amp;gt;PMID:18988191&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
==Significance==&lt;br /&gt;
As simvastatin is an active pharmaceutical ingredient in the cholesterol-lowering drug Zocor®, its efficient synthesis from lovastatin, via LovD is intensely pursued &amp;lt;ref name=&amp;quot;paper4&amp;quot;&amp;gt;PMID:19875080&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
==References==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Eric Ginter</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_316&amp;diff=1223876</id>
		<title>Sandbox Reserved 316</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_316&amp;diff=1223876"/>
		<updated>2011-04-01T22:39:40Z</updated>

		<summary type="html">&lt;p&gt;Eric Ginter: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Template:Sandbox_Reserved_BCMB307}}&lt;br /&gt;
 &amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
{{STRUCTURE_3hle |  PDB=3hle  |  SCENE=  }} &lt;br /&gt;
==Introduction==&lt;br /&gt;
&#039;&#039;&#039;Simvastatin synthase&#039;&#039;&#039; (LovD) is a 46 kDa acyltransferase found in the lovastatin biosynthetic pathway and catalyzes the final step of lovastatin biosynthesis&amp;lt;ref name=&amp;quot;paper4&amp;quot;&amp;gt;PMID:&lt;br /&gt;
17113998&amp;lt;/ref&amp;gt;. Pictured here is the D5 mutant complexed with monacolin J acid (Figure 1).&lt;br /&gt;
&lt;br /&gt;
This enzyme is isolated from the natural product biosynthetic pathways of &#039;&#039;Aspergillus terreus&#039;&#039;. Simvastatin Synthase  converts the inactive monacolin J acid (&amp;lt;scene name=&#039;Sandbox_Reserved_316/Blah/2&#039;&amp;gt;MJA&amp;lt;/scene&amp;gt;) by dimethylbutyryl chloride to yield the protected form of simvastatin (Figure 2), which subsequently undergoes lactonization to yield simvastatin&amp;lt;ref name=&amp;quot;paper5&amp;quot;&amp;gt;PMID:19875080&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
LovD can also synthesize the blockbuster drug simvastatin using MJA and a synthetic α-dimethylbutyryl thioester&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;.&lt;br /&gt;
==Exploring the structure==&lt;br /&gt;
LovD is a 413-amino acid protein predicted to have an α/β hydrolase fold based on primary sequence analysis&amp;lt;ref name=&amp;quot;paper2&amp;quot;&amp;gt;PMID:10334994&amp;lt;/ref&amp;gt;. &lt;br /&gt;
LovD has of two domains. The &amp;lt;scene name=&#039;Sandbox_Reserved_316/First_domain_1/1&#039;&amp;gt;first domain&amp;lt;/scene&amp;gt;, which consists of residues 1–92 and 204–413, is a central seven-stranded antiparallel β-sheet flanked by α-helices on either face&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;. The &amp;lt;scene name=&#039;Sandbox_Reserved_316/Second_domain_1/1&#039;&amp;gt;second domain&amp;lt;/scene&amp;gt; is smaller, consists of residues 93–203 and is primarily α-helical&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
At the core of the enzyme, there are notable loops peripheral to the active site, both in size and architecture. In LovD, these loops give the impression of a ringshaped ridge or baseball catcher’s mitt over the active site with fingers composed of &amp;lt;scene name=&#039;Sandbox_Reserved_316/5_loops/1&#039;&amp;gt;five loops&amp;lt;/scene&amp;gt;: residues 114–125, 147–173, 243–258, 321–327, and 388–391&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
LovD has &amp;lt;scene name=&#039;Sandbox_Reserved_316/Cysteines/1&#039;&amp;gt;nine cysteines&amp;lt;/scene&amp;gt; at the following positions: C40, C49, C60, C72, C89, C216, C266, C380, and C395&amp;lt;ref name=&amp;quot;paper3&amp;quot;&amp;gt;PMID:18988191&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
==Significance==&lt;br /&gt;
As simvastatin is an active pharmaceutical ingredient in the cholesterol-lowering drug Zocor®, its efficient synthesis from lovastatin, via LovD is intensely pursued &amp;lt;ref name=&amp;quot;paper4&amp;quot;&amp;gt;PMID:19875080&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
==References==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Eric Ginter</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_316&amp;diff=1223874</id>
		<title>Sandbox Reserved 316</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_316&amp;diff=1223874"/>
		<updated>2011-04-01T22:38:38Z</updated>

		<summary type="html">&lt;p&gt;Eric Ginter: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Template:Sandbox_Reserved_BCMB307}}&lt;br /&gt;
 &amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
{{STRUCTURE_3hle |  PDB=3hle  |  SCENE=  }} &lt;br /&gt;
==Introduction==&lt;br /&gt;
&#039;&#039;&#039;Simvastatin synthase&#039;&#039;&#039; (LovD) is a 46 kDa acyltransferase found in the lovastatin biosynthetic pathway and catalyzes the final step of lovastatin biosynthesis&amp;lt;ref name=&amp;quot;paper4&amp;quot;&amp;gt;PMID:&lt;br /&gt;
17113998&amp;lt;/ref&amp;gt;. Pictured here is the D5 mutant complexed with monacolin J acid (Figure 1).&lt;br /&gt;
&lt;br /&gt;
This enzyme is isolated from the natural product biosynthetic pathways of &#039;&#039;Aspergillus terreus&#039;&#039;. Simvastatin Synthase  converts the inactive monacolin J acid (&amp;lt;scene name=&#039;Sandbox_Reserved_316/Blah/2&#039;&amp;gt;MJA&amp;lt;/scene&amp;gt;) by dimethylbutyryl chloride to yield the protected form of simvastatin (Figure 2), which subsequently undergoes lactonization to yield simvastatin&amp;lt;ref name=&amp;quot;paper5&amp;quot;&amp;gt;PMID:19875080&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
LovD can also synthesize the blockbuster drug simvastatin using MJA and a synthetic α-dimethylbutyryl thioester&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;.&lt;br /&gt;
==Exploring the structure==&lt;br /&gt;
LovD is a 413-amino acid protein predicted to have an α/β hydrolase fold based on primary sequence analysis&amp;lt;ref name=&amp;quot;paper2&amp;quot;&amp;gt;PMID:10334994&amp;lt;/ref&amp;gt;. &lt;br /&gt;
LovD has of two domains. The &amp;lt;scene name=&#039;Sandbox_Reserved_316/First_domain_1/1&#039;&amp;gt;first domain&amp;lt;/scene&amp;gt;, which consists of residues 1–92 and 204–413, is a central seven-stranded antiparallel β-sheet flanked by α-helices on either face&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;. The &amp;lt;scene name=&#039;Sandbox_Reserved_316/Second_domain_1/1&#039;&amp;gt;second domain&amp;lt;/scene&amp;gt; is smaller, consists of residues 93–203 and is primarily α-helical&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
At the core of the enzyme, there are notable loops peripheral to the active site, both in size and architecture. In LovD, these loops give the impression of a ringshaped ridge or baseball catcher’s mitt over the active site with fingers composed of &amp;lt;scene name=&#039;Sandbox_Reserved_316/5_loops/1&#039;&amp;gt;five loops&amp;lt;/scene&amp;gt;: residues 114–125, 147–173, 243–258, 321–327, and 388–391&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
LovD has &amp;lt;scene name=&#039;Sandbox_Reserved_316/Cysteines/1&#039;&amp;gt;nine cysteines&amp;lt;/scene&amp;gt; at the following positions: C40, C49, C60, C72, C89, C216, C266, C380, and C395&amp;lt;ref name=&amp;quot;paper3&amp;quot;&amp;gt;PMID:18988191&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
==Significance==&lt;br /&gt;
As simvastatin is an active pharmaceutical ingredient in the cholesterol-lower drug Zocor®, its efficient synthesis from lovastatin, via LovD is intensely pursued &amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
==References==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Eric Ginter</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_316&amp;diff=1223872</id>
		<title>Sandbox Reserved 316</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_316&amp;diff=1223872"/>
		<updated>2011-04-01T22:35:15Z</updated>

		<summary type="html">&lt;p&gt;Eric Ginter: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Template:Sandbox_Reserved_BCMB307}}&lt;br /&gt;
 &amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
{{STRUCTURE_3hle |  PDB=3hle  |  SCENE=  }} &lt;br /&gt;
==Introduction==&lt;br /&gt;
&#039;&#039;&#039;Simvastatin synthase&#039;&#039;&#039; (LovD) is a 46 kDa acyltransferase found in the lovastatin biosynthetic pathway and catalyzes the final step of lovastatin biosynthesis&amp;lt;ref name=&amp;quot;paper4&amp;quot;&amp;gt;PMID:&lt;br /&gt;
17113998&amp;lt;/ref&amp;gt;. Pictured here is the D5 mutant complexed with monacolin J acid (Figure 1).&lt;br /&gt;
&lt;br /&gt;
This enzyme is isolated from the natural product biosynthetic pathways of &#039;&#039;Aspergillus terreus&#039;&#039;. Simvastatin Synthase  converts the inactive monacolin J acid (&amp;lt;scene name=&#039;Sandbox_Reserved_316/Blah/2&#039;&amp;gt;MJA&amp;lt;/scene&amp;gt;) by dimethylbutyryl chloride to yield the protected form of simvastatin (Figure 2), which subsequently undergoes lactonization to yield simvastatin.&lt;br /&gt;
&lt;br /&gt;
LovD can also synthesize the blockbuster drug simvastatin using MJA and a synthetic α-dimethylbutyryl thioester&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
==Exploring the structure==&lt;br /&gt;
LovD is a 413-amino acid protein predicted to have an α/β hydrolase fold based on primary sequence analysis&amp;lt;ref name=&amp;quot;paper2&amp;quot;&amp;gt;PMID:10334994&amp;lt;/ref&amp;gt;. &lt;br /&gt;
LovD has of two domains. The &amp;lt;scene name=&#039;Sandbox_Reserved_316/First_domain_1/1&#039;&amp;gt;first domain&amp;lt;/scene&amp;gt;, which consists of residues 1–92 and 204–413, is a central seven-stranded antiparallel β-sheet flanked by α-helices on either face&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;. The &amp;lt;scene name=&#039;Sandbox_Reserved_316/Second_domain_1/1&#039;&amp;gt;second domain&amp;lt;/scene&amp;gt; is smaller, consists of residues 93–203 and is primarily α-helical&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
At the core of the enzyme, there are notable loops peripheral to the active site, both in size and architecture. In LovD, these loops give the impression of a ringshaped ridge or baseball catcher’s mitt over the active site with fingers composed of &amp;lt;scene name=&#039;Sandbox_Reserved_316/5_loops/1&#039;&amp;gt;five loops&amp;lt;/scene&amp;gt;: residues 114–125, 147–173, 243–258, 321–327, and 388–391&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
LovD has &amp;lt;scene name=&#039;Sandbox_Reserved_316/Cysteines/1&#039;&amp;gt;nine cysteines&amp;lt;/scene&amp;gt; at the following positions: C40, C49, C60, C72, C89, C216, C266, C380, and C395&amp;lt;ref name=&amp;quot;paper3&amp;quot;&amp;gt;PMID:18988191&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
==Significance==&lt;br /&gt;
As simvastatin is an active pharmaceutical ingredient in the cholesterol-lower drug Zocor®, its efficient synthesis from lovastatin, via LovD is intensely pursued &amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
==References==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Eric Ginter</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_316&amp;diff=1223871</id>
		<title>Sandbox Reserved 316</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_316&amp;diff=1223871"/>
		<updated>2011-04-01T22:33:53Z</updated>

		<summary type="html">&lt;p&gt;Eric Ginter: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Template:Sandbox_Reserved_BCMB307}}&lt;br /&gt;
 &amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
{{STRUCTURE_3hle |  PDB=3hle  |  SCENE=  }} &lt;br /&gt;
==Introduction==&lt;br /&gt;
&#039;&#039;&#039;Simvastatin synthase&#039;&#039;&#039; (LovD) is a 46 kDa acyltransferase found in the lovastatin biosynthetic pathway and catalyzes the final step of lovastatin biosynthesis&amp;lt;ref name=&amp;quot;paper4&amp;quot;&amp;gt;PMID:&lt;br /&gt;
17113998&amp;lt;/ref&amp;gt;. Pictured here is the D5 mutant complexed with monacolin J acid (Figure 1).&lt;br /&gt;
&lt;br /&gt;
This enzyme is isolated from the natural product biosynthetic pathways of &#039;&#039;Aspergillus terreus&#039;&#039;. Simvastatin Synthase  converts the inactive monacolin J acid (&amp;lt;scene name=&#039;Sandbox_Reserved_316/Blah/2&#039;&amp;gt;MJA&amp;lt;/scene&amp;gt;) by dimethylbutyryl chloride to yield the protected form of simvastatin (Figure 2), which subsequently undergoes lactonization to yield simvastatin.&lt;br /&gt;
&lt;br /&gt;
LovD can also synthesize the blockbuster drug simvastatin using MJA and a synthetic α-dimethylbutyryl thioester&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
==Exploring the structure==&lt;br /&gt;
LovD is a 413-amino acid protein predicted to have an α/β hydrolase fold based on primary sequence analysis&amp;lt;ref name=&amp;quot;paper2&amp;quot;&amp;gt;PMID:10334994&amp;lt;/ref&amp;gt;. &lt;br /&gt;
LovD has of two domains. The &amp;lt;scene name=&#039;Sandbox_Reserved_316/First_domain_1/1&#039;&amp;gt;first domain&amp;lt;/scene&amp;gt;, which consists of residues 1–92 and 204–413, is a central seven-stranded antiparallel β-sheet flanked by α-helices on either face&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;. The &amp;lt;scene name=&#039;Sandbox_Reserved_316/Second_domain_1/1&#039;&amp;gt;second domain&amp;lt;/scene&amp;gt; is smaller, consists of residues 93–203 and is primarily α-helical&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
At the core of the enzyme, there are notable loops peripheral to the active site, both in size and architecture. In LovD, these loops give the impression of a ringshaped ridge or baseball catcher’s mitt over the active site with fingers composed of &amp;lt;scene name=&#039;Sandbox_Reserved_316/5_loops/1&#039;&amp;gt;five loops&amp;lt;/scene&amp;gt;: residues 114–125, 147–173, 243–258, 321–327, and 388–391&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
LovD has &amp;lt;scene name=&#039;Sandbox_Reserved_316/Cysteines/1&#039;&amp;gt;nine cysteines&amp;lt;/scene&amp;gt; at the following positions: C40, C49, C60, C72, C89, C216, C266, C380, and C395&amp;lt;ref name=&amp;quot;paper3&amp;quot;&amp;gt;PMID:18988191&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
==Exploring the structure==&lt;br /&gt;
As simvastatin is an active pharmaceutical ingredient in the cholesterol-lower drug Zocor®, so that efficient synthesis of simvastatin from lovastatin is highly pursued &amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
==References==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Eric Ginter</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_316&amp;diff=1219709</id>
		<title>Sandbox Reserved 316</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_316&amp;diff=1219709"/>
		<updated>2011-03-24T18:40:45Z</updated>

		<summary type="html">&lt;p&gt;Eric Ginter: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Template:Sandbox_Reserved_BCMB307}}&lt;br /&gt;
 &amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
{{STRUCTURE_3hle |  PDB=3hle  |  SCENE=  }} &lt;br /&gt;
==Introduction==&lt;br /&gt;
&#039;&#039;&#039;Simvastatin synthase&#039;&#039;&#039; (LovD) is a 46 kDa acyltransferase found in the lovastatin biosynthetic pathway and catalyzes the final step of lovastatin biosynthesis&amp;lt;ref name=&amp;quot;paper4&amp;quot;&amp;gt;PMID:&lt;br /&gt;
17113998&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
This enzyme is isolated from the natural product biosynthetic pathways of &#039;&#039;Aspergillus terreus&#039;&#039;. Simvastatin Synthase  converts the inactive monacolin J acid (&amp;lt;scene name=&#039;Sandbox_Reserved_316/Blah/2&#039;&amp;gt;MJA&amp;lt;/scene&amp;gt;) by dimethylbutyryl chloride to yield the protected form of simvastatin, which subsequently undergoes lactonization to yield simvastatin. &lt;br /&gt;
&lt;br /&gt;
LovD can also synthesize the blockbuster drug simvastatin using MJA and a synthetic α-dimethylbutyryl thioester&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
==Exploring the structure==&lt;br /&gt;
LovD is a 413-amino acid protein predicted to have an α/β hydrolase fold based on primary sequence analysis&amp;lt;ref name=&amp;quot;paper2&amp;quot;&amp;gt;PMID:10334994&amp;lt;/ref&amp;gt;. &lt;br /&gt;
LovD has of two domains. The &amp;lt;scene name=&#039;Sandbox_Reserved_316/First_domain_1/1&#039;&amp;gt;first domain&amp;lt;/scene&amp;gt;, which consists of residues 1–92 and 204–413, is a central seven-stranded antiparallel β-sheet flanked by α-helices on either face&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;. The &amp;lt;scene name=&#039;Sandbox_Reserved_316/Second_domain_1/1&#039;&amp;gt;second domain&amp;lt;/scene&amp;gt; is smaller, consists of residues 93–203 and is primarily α-helical&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
At the core of the enzyme, there are notable loops peripheral to the active site, both in size and architecture. In LovD, these loops give the impression of a ringshaped ridge or baseball catcher’s mitt over the active site with fingers composed of &amp;lt;scene name=&#039;Sandbox_Reserved_316/5_loops/1&#039;&amp;gt;five loops&amp;lt;/scene&amp;gt;: residues 114–125, 147–173, 243–258, 321–327, and 388–391&amp;lt;ref name=&amp;quot;paper1&amp;quot;&amp;gt;PMID:17277201&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
LovD has &amp;lt;scene name=&#039;Sandbox_Reserved_316/Cysteines/1&#039;&amp;gt;nine cysteines&amp;lt;/scene&amp;gt; at the following positions: C40, C49, C60, C72, C89, C216, C266, C380, and C395&amp;lt;ref name=&amp;quot;paper3&amp;quot;&amp;gt;PMID:18988191&amp;lt;/ref&amp;gt;.&lt;br /&gt;
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==References==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Eric Ginter</name></author>
	</entry>
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