https://proteopedia.org/api.php?action=feedcontributions&feedformat=atom&user=Frieda+ReichsmanProteopedia - User contributions [en]2026-10-05T07:22:57ZUser contributionsMediaWiki 1.43.8https://proteopedia.org/index.php?title=User:Frieda_Reichsman/Macros&diff=3298726User:Frieda Reichsman/Macros2020-10-02T12:44:49Z<p>Frieda Reichsman: New page: ==Macros== <StructureSection load='1stp' size='340' side='right' caption='Caption for this structure' scene=''> This is a default text for your page '''Frieda Reichsman/Macros'''. Click ab...</p>
<hr />
<div>==Macros==<br />
<StructureSection load='1stp' size='340' side='right' caption='Caption for this structure' scene=''><br />
This is a default text for your page '''Frieda Reichsman/Macros'''. Click above on '''edit this page''' to modify. Be careful with the &lt; and &gt; signs.<br />
You may include any references to papers as in: the use of JSmol in Proteopedia <ref>DOI 10.1002/ijch.201300024</ref> or to the article describing Jmol <ref>PMID:21638687</ref> to the rescue.<br />
<br />
== Function ==<br />
<br />
== Disease ==<br />
<br />
== Relevance ==<br />
<br />
== Structural highlights ==<br />
<br />
This is a sample scene created with SAT to <scene name="/12/3456/Sample/1">color</scene> by Group, and another to make <scene name="/12/3456/Sample/2">a transparent representation</scene> of the protein. You can make your own scenes on SAT starting from scratch or loading and editing one of these sample scenes.<br />
<br />
</StructureSection><br />
== References ==<br />
<references/></div>Frieda Reichsmanhttps://proteopedia.org/index.php?title=User:Frieda_Reichsman&diff=3298725User:Frieda Reichsman2020-10-02T12:32:51Z<p>Frieda Reichsman: </p>
<hr />
<div><br />
[[User:Frieda Reichsman/Macros]]<br />
<br />
<br />
<br />
<br />
<br />
[[User:Frieda Reichsman/Sandbox 1]]<br />
<br />
<big> [[User:Frieda Reichsman/PALM|PALM Workshop page]]<br />
</big><br />
<br />
<br />
[http://moleculesinmotion.com MoleculesInMotion.Com]<br />
<br />
<!-- links to pages within Proteopedia: [[page name|link label]]<br />
links to external url's: [http://... link label]<br />
<br />
Click the "3D" button above the wikitext box to insert a Jmol<br />
--><br />
<applet load='2fsr' size='300' frame='true' align='right' caption='Insert caption here' /><br />
<br />
*<scene name='User:Frieda_S._Reichsman/2rh1/1'>Scene 1 for MW</scene><br />
*<scene name='User:Frieda_S._Reichsman/2rh1/2'>Scene 2 for MW</scene></div>Frieda Reichsmanhttps://proteopedia.org/index.php?title=User:Frieda_Reichsman/Sandbox_1&diff=3296879User:Frieda Reichsman/Sandbox 12020-09-29T12:19:58Z<p>Frieda Reichsman: </p>
<hr />
<div><StructureSection load='1uwx' size='300' side='right' scene='38/389917/Openingview_with_surface/1' caption='Protein G. But not a G protein... Really? ([[1uwx]])'><br />
<br />
<br />
<scene name='38/389917/Openingview_with_surface/1'>Opening view with surface</scene><br />
<jmol><br />
<jmolButton><br />
<script>select protein; cpk;</script><br />
<text>Spacefill</text><br />
</jmolButton><br />
</jmol><br />
<br />
<jmol><br />
<jmolButton><br />
<script> var a = [10,20,30,40,50,60,70,80,90,100]; for(var i IN a) {select backbone; spacefill @i%; delay 0.1;}<br />
</script><br />
<text>Fade in backbone atoms</text><br />
</jmolButton><br />
</jmol><br />
<br />
<jmol><br />
<jmolButton><br />
<script> var a = [10,20,30,40,50,60,70,80,90,100]; for(var i IN a) {select sidechain; spacefill @i%; delay 0.1;}<br />
</script><br />
<text>Spacefill fade in sidechain atoms</text><br />
</jmolButton><br />
</jmol><br />
<br />
<br />
===Surface fade code-in-page versions===<br />
<br />
While not templates, carry out similar functions as the `Surface Fade` templates and may be useful for further development or as examples of using Jmol coding in Proteopedia pages.<br />
<br />
<jmol><br />
<jmolLink><br />
<script> var a = [1,2,3,4,5,6,7,8]; for(var i IN a) {isosurface translucent @i; delay 0.4;}<br />
</script><br />
<text>Fade surface to invisible</text><br />
</jmolLink><br />
</jmol> (basic)<br />
<br />
<jmol><br />
<jmolLink><br />
<script> set ribbonborder on; set antialiasdisplay on; var a = [1,2,3,4,5,6,7,8]; for(var i IN a) {isosurface translucent @i; delay 0.4;}<br />
</script><br />
<text>Fade surface to invisible</text><br />
</jmolLink><br />
</jmol> (with fancy cartoons)<br />
<br />
<jmol><br />
<jmolLink><br />
<script> var a = [8,7,6,5,4,3,2,1,0]; for(var i IN a) {isosurface translucent @i; delay 0.4;}<br />
</script><br />
<text>Fade back to surface opaque</text><br />
</jmolLink><br />
</jmol><br />
<br />
<scene name='38/389917/Openingview02/1'>Reset opening view</scene></div>Frieda Reichsmanhttps://proteopedia.org/index.php?title=User:Frieda_Reichsman/Sandbox_1&diff=3296872User:Frieda Reichsman/Sandbox 12020-09-29T12:05:47Z<p>Frieda Reichsman: </p>
<hr />
<div><scene name='38/389917/Openingview_with_surface/1'>Opening view with surface</scene><br />
<jmol><br />
<jmolButton><br />
<script>select protein; cpk;</script><br />
<text>Spacefill</text><br />
</jmolButton><br />
</jmol><br />
<br />
<jmol><br />
<jmolButton><br />
<script> var a = [10,20,30,40,50,60,70,80,90,100]; for(var i IN a) {select backbone; spacefill @i%; delay 0.1;}<br />
</script><br />
<text>Fade in backbone atoms</text><br />
</jmolButton><br />
</jmol><br />
<br />
<jmol><br />
<jmolButton><br />
<script> var a = [10,20,30,40,50,60,70,80,90,100]; for(var i IN a) {select sidechain; spacefill @i%; delay 0.1;}<br />
</script><br />
<text>Spacefill fade in sidechain atoms</text><br />
</jmolButton><br />
</jmol><br />
<br />
<br />
===Surface fade code-in-page versions===<br />
<br />
While not templates, carry out similar functions as the `Surface Fade` templates and may be useful for further development or as examples of using Jmol coding in Proteopedia pages.<br />
<br />
<jmol><br />
<jmolLink><br />
<script> var a = [1,2,3,4,5,6,7,8]; for(var i IN a) {isosurface translucent @i; delay 0.4;}<br />
</script><br />
<text>Fade surface to invisible</text><br />
</jmolLink><br />
</jmol> (basic)<br />
<br />
<jmol><br />
<jmolLink><br />
<script> set ribbonborder on; set antialiasdisplay on; var a = [1,2,3,4,5,6,7,8]; for(var i IN a) {isosurface translucent @i; delay 0.4;}<br />
</script><br />
<text>Fade surface to invisible</text><br />
</jmolLink><br />
</jmol> (with fancy cartoons)<br />
<br />
<jmol><br />
<jmolLink><br />
<script> var a = [8,7,6,5,4,3,2,1,0]; for(var i IN a) {isosurface translucent @i; delay 0.4;}<br />
</script><br />
<text>Fade back to surface opaque</text><br />
</jmolLink><br />
</jmol><br />
<br />
<scene name='38/389917/Openingview02/1'>Reset opening view</scene><br />
<applet load='1uwx' size='300' frame='true' align='right' caption='Protein G. But not a G protein... Really?' scene ='38/389917/Openingview_with_surface/1'></div>Frieda Reichsmanhttps://proteopedia.org/index.php?title=User:Frieda_Reichsman/Sandbox_1&diff=3296871User:Frieda Reichsman/Sandbox 12020-09-29T12:02:48Z<p>Frieda Reichsman: </p>
<hr />
<div><br />
<scene name='38/389917/Openingview_with_surface/1'>Opening view with surface</scene><br />
<applet load='1uwx' size='300' frame='true' align='right' caption='Protein G. But not a G protein... Really?' scene ='38/389917/Openingview_with_surface/1'><br />
<br />
<jmol><br />
<jmolButton><br />
<script>select protein; cpk;</script><br />
<text>Spacefill</text><br />
</jmolButton><br />
</jmol><br />
<br />
<jmol><br />
<jmolButton><br />
<script> var a = [10,20,30,40,50,60,70,80,90,100]; for(var i IN a) {select backbone; spacefill @i%; delay 0.1;}<br />
</script><br />
<text>Fade in backbone atoms</text><br />
</jmolButton><br />
</jmol><br />
<br />
<jmol><br />
<jmolButton><br />
<script> var a = [10,20,30,40,50,60,70,80,90,100]; for(var i IN a) {select sidechain; spacefill @i%; delay 0.1;}<br />
</script><br />
<text>Spacefill fade in sidechain atoms</text><br />
</jmolButton><br />
</jmol><br />
<br />
===Surface fade code-in-page versions===<br />
<br />
While not templates, carry out similar functions as the `Surface Fade` templates and may be useful for further development or as examples of using Jmol coding in Proteopedia pages.<br />
<br />
<jmol><br />
<jmolLink><br />
<script> var a = [1,2,3,4,5,6,7,8]; for(var i IN a) {isosurface translucent @i; delay 0.4;}<br />
</script><br />
<text>Fade surface to invisible</text><br />
</jmolLink><br />
</jmol> (basic)<br />
<br />
<jmol><br />
<jmolLink><br />
<script> set ribbonborder on; set antialiasdisplay on; var a = [1,2,3,4,5,6,7,8]; for(var i IN a) {isosurface translucent @i; delay 0.4;}<br />
</script><br />
<text>Fade surface to invisible</text><br />
</jmolLink><br />
</jmol> (with fancy cartoons)<br />
<br />
<jmol><br />
<jmolLink><br />
<script> var a = [8,7,6,5,4,3,2,1,0]; for(var i IN a) {isosurface translucent @i; delay 0.4;}<br />
</script><br />
<text>Fade back to surface opaque</text><br />
</jmolLink><br />
</jmol><br />
<br />
<br />
<scene name='38/389917/Openingview02/1'>Reset opening view</scene></div>Frieda Reichsmanhttps://proteopedia.org/index.php?title=User:Frieda_Reichsman/Sandbox_1&diff=3279654User:Frieda Reichsman/Sandbox 12020-08-16T17:47:40Z<p>Frieda Reichsman: </p>
<hr />
<div><br />
<br />
<scene name='38/389917/Openingview_with_surface/1'>Opening view with surface</scene><br />
<br />
<jmol><br />
<jmolButton><br />
<script>select protein; cpk;</script><br />
<text>Spacefill</text><br />
</jmolButton><br />
</jmol><br />
<br />
<jmol><br />
<jmolButton><br />
<script> var a = [10,20,30,40,50,60,70,80,90,100]; for(var i IN a) {select backbone; spacefill @i%; delay 0.1;}<br />
</script><br />
<text>Fade in backbone atoms</text><br />
</jmolButton><br />
</jmol><br />
<br />
<jmol><br />
<jmolButton><br />
<script> var a = [10,20,30,40,50,60,70,80,90,100]; for(var i IN a) {select sidechain; spacefill @i%; delay 0.1;}<br />
</script><br />
<text>Spacefill fade in sidechain atoms</text><br />
</jmolButton><br />
</jmol><br />
<br />
===Surface fade code-in-page versions===<br />
<br />
While not templates, carry out similar functions as the `Surface Fade` templates and may be useful for further development or as examples of using Jmol coding in Proteopedia pages.<br />
<br />
<jmol><br />
<jmolLink><br />
<script> var a = [1,2,3,4,5,6,7,8]; for(var i IN a) {isosurface translucent @i; delay 0.4;}<br />
</script><br />
<text>Fade surface to invisible</text><br />
</jmolLink><br />
</jmol> (basic)<br />
<br />
<jmol><br />
<jmolLink><br />
<script> set ribbonborder on; set antialiasdisplay on; var a = [1,2,3,4,5,6,7,8]; for(var i IN a) {isosurface translucent @i; delay 0.4;}<br />
</script><br />
<text>Fade surface to invisible</text><br />
</jmolLink><br />
</jmol> (with fancy cartoons)<br />
<br />
<jmol><br />
<jmolLink><br />
<script> var a = [8,7,6,5,4,3,2,1,0]; for(var i IN a) {isosurface translucent @i; delay 0.4;}<br />
</script><br />
<text>Fade back to surface opaque</text><br />
</jmolLink><br />
</jmol><br />
<br />
<br />
<scene name='38/389917/Openingview02/1'>Reset opening view</scene><br />
<br />
<applet load='1uwx' size='300' frame='true' align='right' caption='Protein G. But not a G protein... Really?' scene ='38/389917/Openingview_with_surface/1'></div>Frieda Reichsmanhttps://proteopedia.org/index.php?title=User:Frieda_Reichsman/Sandbox_1&diff=3279653User:Frieda Reichsman/Sandbox 12020-08-16T17:46:54Z<p>Frieda Reichsman: </p>
<hr />
<div><applet load='1uwx' size='300' frame='true' align='right' caption='Protein G. But not a G protein... Really?' scene ='38/389917/Openingview_with_surface/1'><br />
<br />
<br />
<scene name='38/389917/Openingview_with_surface/1'>Opening view with surface</scene><br />
<br />
<jmol><br />
<jmolButton><br />
<script>select protein; cpk;</script><br />
<text>Spacefill</text><br />
</jmolButton><br />
</jmol><br />
<br />
<jmol><br />
<jmolButton><br />
<script> var a = [10,20,30,40,50,60,70,80,90,100]; for(var i IN a) {select backbone; spacefill @i%; delay 0.1;}<br />
</script><br />
<text>Fade in backbone atoms</text><br />
</jmolButton><br />
</jmol><br />
<br />
<jmol><br />
<jmolButton><br />
<script> var a = [10,20,30,40,50,60,70,80,90,100]; for(var i IN a) {select sidechain; spacefill @i%; delay 0.1;}<br />
</script><br />
<text>Spacefill fade in sidechain atoms</text><br />
</jmolButton><br />
</jmol><br />
<br />
===Surface fade code-in-page versions===<br />
<br />
While not templates, carry out similar functions as the `Surface Fade` templates and may be useful for further development or as examples of using Jmol coding in Proteopedia pages.<br />
<br />
<jmol><br />
<jmolLink><br />
<script> var a = [1,2,3,4,5,6,7,8]; for(var i IN a) {isosurface translucent @i; delay 0.4;}<br />
</script><br />
<text>Fade surface to invisible</text><br />
</jmolLink><br />
</jmol> (basic)<br />
<br />
<jmol><br />
<jmolLink><br />
<script> set ribbonborder on; set antialiasdisplay on; var a = [1,2,3,4,5,6,7,8]; for(var i IN a) {isosurface translucent @i; delay 0.4;}<br />
</script><br />
<text>Fade surface to invisible</text><br />
</jmolLink><br />
</jmol> (with fancy cartoons)<br />
<br />
<jmol><br />
<jmolLink><br />
<script> var a = [8,7,6,5,4,3,2,1,0]; for(var i IN a) {isosurface translucent @i; delay 0.4;}<br />
</script><br />
<text>Fade back to surface opaque</text><br />
</jmolLink><br />
</jmol><br />
<br />
<br />
<scene name='38/389917/Openingview02/1'>Reset opening view</scene></div>Frieda Reichsmanhttps://proteopedia.org/index.php?title=User:Frieda_Reichsman/Sandbox_1&diff=3279652User:Frieda Reichsman/Sandbox 12020-08-16T17:44:52Z<p>Frieda Reichsman: </p>
<hr />
<div><br />
<scene name='38/389917/Openingview_with_surface/1'>Opening view with surface</scene><br />
<br />
<jmol><br />
<jmolButton><br />
<script>select protein; cpk;</script><br />
<text>Spacefill</text><br />
</jmolButton><br />
</jmol><br />
<br />
<jmol><br />
<jmolButton><br />
<script> var a = [10,20,30,40,50,60,70,80,90,100]; for(var i IN a) {select backbone; spacefill @i%; delay 0.1;}<br />
</script><br />
<text>Fade in backbone atoms</text><br />
</jmolButton><br />
</jmol><br />
<br />
<jmol><br />
<jmolButton><br />
<script> var a = [10,20,30,40,50,60,70,80,90,100]; for(var i IN a) {select sidechain; spacefill @i%; delay 0.1;}<br />
</script><br />
<text>Spacefill fade in sidechain atoms</text><br />
</jmolButton><br />
</jmol><br />
<br />
===Surface fade code-in-page versions===<br />
<br />
While not templates, carry out similar functions as the `Surface Fade` templates and may be useful for further development or as examples of using Jmol coding in Proteopedia pages.<br />
<br />
<jmol><br />
<jmolLink><br />
<script> var a = [1,2,3,4,5,6,7,8]; for(var i IN a) {isosurface translucent @i; delay 0.4;}<br />
</script><br />
<text>Fade surface to invisible</text><br />
</jmolLink><br />
</jmol> (basic)<br />
<br />
<jmol><br />
<jmolLink><br />
<script> set ribbonborder on; set antialiasdisplay on; var a = [1,2,3,4,5,6,7,8]; for(var i IN a) {isosurface translucent @i; delay 0.4;}<br />
</script><br />
<text>Fade surface to invisible</text><br />
</jmolLink><br />
</jmol> (with fancy cartoons)<br />
<br />
<jmol><br />
<jmolLink><br />
<script> var a = [8,7,6,5,4,3,2,1,0]; for(var i IN a) {isosurface translucent @i; delay 0.4;}<br />
</script><br />
<text>Fade back to surface opaque</text><br />
</jmolLink><br />
</jmol><br />
<br />
<br />
<scene name='38/389917/Openingview02/1'>Reset opening view</scene><br />
<br />
<applet load='1uwx' size='300' frame='true' align='right' caption='Protein G. But not a G protein... Really?' scene ='38/389917/Openingview_with_surface/1'></div>Frieda Reichsmanhttps://proteopedia.org/index.php?title=User:Frieda_Reichsman/Sandbox_1&diff=3279651User:Frieda Reichsman/Sandbox 12020-08-16T17:43:01Z<p>Frieda Reichsman: </p>
<hr />
<div><scene name='38/389917/Openingview_with_surface/1'>Opening view with surface</scene><br />
<br />
<jmol><br />
<jmolButton><br />
<script>select protein; cpk;</script><br />
<text>Spacefill</text><br />
</jmolButton><br />
</jmol><br />
<br />
<jmol><br />
<jmolButton><br />
<script> var a = [10,20,30,40,50,60,70,80,90,100]; for(var i IN a) {select backbone; spacefill @i%; delay 0.1;}<br />
</script><br />
<text>Fade in backbone atoms</text><br />
</jmolButton><br />
</jmol><br />
<br />
<jmol><br />
<jmolButton><br />
<script> var a = [10,20,30,40,50,60,70,80,90,100]; for(var i IN a) {select sidechain; spacefill @i%; delay 0.1;}<br />
</script><br />
<text>Spacefill fade in sidechain atoms</text><br />
</jmolButton><br />
</jmol><br />
<br />
===Surface fade code-in-page versions===<br />
<br />
While not templates, carry out similar functions as the `Surface Fade` templates and may be useful for further development or as examples of using Jmol coding in Proteopedia pages.<br />
<br />
<jmol><br />
<jmolLink><br />
<script> var a = [1,2,3,4,5,6,7,8]; for(var i IN a) {isosurface translucent @i; delay 0.4;}<br />
</script><br />
<text>Fade surface to invisible</text><br />
</jmolLink><br />
</jmol> (basic)<br />
<br />
<jmol><br />
<jmolLink><br />
<script> set ribbonborder on; set antialiasdisplay on; var a = [1,2,3,4,5,6,7,8]; for(var i IN a) {isosurface translucent @i; delay 0.4;}<br />
</script><br />
<text>Fade surface to invisible</text><br />
</jmolLink><br />
</jmol> (with fancy cartoons)<br />
<br />
<jmol><br />
<jmolLink><br />
<script> var a = [8,7,6,5,4,3,2,1,0]; for(var i IN a) {isosurface translucent @i; delay 0.4;}<br />
</script><br />
<text>Fade back to surface opaque</text><br />
</jmolLink><br />
</jmol><br />
<br />
<br />
<scene name='38/389917/Openingview02/1'>Reset opening view</scene><br />
<br />
<applet load='1uwx' size='300' frame='true' align='right' caption='Protein G. But not a G protein... Really?' scene ='38/389917/Openingview_with_surface/1></div>Frieda Reichsmanhttps://proteopedia.org/index.php?title=User:Frieda_Reichsman/Sandbox_1&diff=3279650User:Frieda Reichsman/Sandbox 12020-08-16T17:40:23Z<p>Frieda Reichsman: </p>
<hr />
<div><scene name='38/389917/Openingview_with_surface/1'>Opening view with surface</scene><br />
<br />
<jmol><br />
<jmolButton><br />
<script>select protein; cpk;</script><br />
<text>Spacefill</text><br />
</jmolButton><br />
</jmol><br />
<br />
<jmol><br />
<jmolButton><br />
<script> var a = [10,20,30,40,50,60,70,80,90,100]; for(var i IN a) {select backbone; spacefill @i%; delay 0.1;}<br />
</script><br />
<text>Fade in backbone atoms</text><br />
</jmolButton><br />
</jmol><br />
<br />
<jmol><br />
<jmolButton><br />
<script> var a = [10,20,30,40,50,60,70,80,90,100]; for(var i IN a) {select sidechain; spacefill @i%; delay 0.1;}<br />
</script><br />
<text>Spacefill fade in sidechain atoms</text><br />
</jmolButton><br />
</jmol><br />
<br />
===Surface fade code-in-page versions===<br />
<br />
While not templates, carry out similar functions as the `Surface Fade` templates and may be useful for further development or as examples of using Jmol coding in Proteopedia pages.<br />
<br />
<jmol><br />
<jmolLink><br />
<script> var a = [1,2,3,4,5,6,7,8]; for(var i IN a) {isosurface translucent @i; delay 0.4;}<br />
</script><br />
<text>Fade surface to invisible</text><br />
</jmolLink><br />
</jmol> (basic)<br />
<br />
<jmol><br />
<jmolLink><br />
<script> set ribbonborder on; set antialiasdisplay on; var a = [1,2,3,4,5,6,7,8]; for(var i IN a) {isosurface translucent @i; delay 0.4;}<br />
</script><br />
<text>Fade surface to invisible</text><br />
</jmolLink><br />
</jmol> (with fancy cartoons)<br />
<br />
<jmol><br />
<jmolLink><br />
<script> var a = [8,7,6,5,4,3,2,1,0]; for(var i IN a) {isosurface translucent @i; delay 0.4;}<br />
</script><br />
<text>Fade back to surface opaque</text><br />
</jmolLink><br />
</jmol><br />
<br />
<br />
<scene name='38/389917/Openingview02/1'>Reset opening view</scene><br />
<br />
<applet load='1uwx' size='300' frame='true' align='right' caption='Protein G. But not a G protein... Really?' scene ='8/389917/Openingview_with_surface/1/></div>Frieda Reichsmanhttps://proteopedia.org/index.php?title=User:Frieda_Reichsman/Sandbox_1&diff=3279649User:Frieda Reichsman/Sandbox 12020-08-16T17:37:42Z<p>Frieda Reichsman: </p>
<hr />
<div><scene name='38/389917/Openingview_with_surface/1'>Opening view with surface</scene><br />
<br />
<jmol><br />
<jmolButton><br />
<script>select protein; cpk;</script><br />
<text>Spacefill</text><br />
</jmolButton><br />
</jmol><br />
<br />
<jmol><br />
<jmolButton><br />
<script> var a = [10,20,30,40,50,60,70,80,90,100]; for(var i IN a) {select backbone; spacefill @i%; delay 0.1;}<br />
</script><br />
<text>Fade in backbone atoms</text><br />
</jmolButton><br />
</jmol><br />
<br />
<jmol><br />
<jmolButton><br />
<script> var a = [10,20,30,40,50,60,70,80,90,100]; for(var i IN a) {select sidechain; spacefill @i%; delay 0.1;}<br />
</script><br />
<text>Spacefill fade in sidechain atoms</text><br />
</jmolButton><br />
</jmol><br />
<br />
===Surface fade code-in-page versions===<br />
<br />
While not templates, carry out similar functions as the `Surface Fade` templates and may be useful for further development or as examples of using Jmol coding in Proteopedia pages.<br />
<br />
<jmol><br />
<jmolLink><br />
<script> var a = [1,2,3,4,5,6,7,8]; for(var i IN a) {isosurface translucent @i; delay 0.4;}<br />
</script><br />
<text>Fade surface to invisible</text><br />
</jmolLink><br />
</jmol> (basic)<br />
<br />
<jmol><br />
<jmolLink><br />
<script> set ribbonborder on; set antialiasdisplay on; var a = [1,2,3,4,5,6,7,8]; for(var i IN a) {isosurface translucent @i; delay 0.4;}<br />
</script><br />
<text>Fade surface to invisible</text><br />
</jmolLink><br />
</jmol> (with fancy cartoons)<br />
<br />
<jmol><br />
<jmolLink><br />
<script> var a = [8,7,6,5,4,3,2,1,0]; for(var i IN a) {isosurface translucent @i; delay 0.4;}<br />
</script><br />
<text>Fade back to surface opaque</text><br />
</jmolLink><br />
</jmol><br />
<br />
<br />
<scene name='38/389917/Openingview02/1'>Reset opening view</scene><br />
<br />
<applet load='1uwx' size='300' frame='true' align='right' caption='Protein G. But not a G protein... Really?' scene ='38/389917/Openingview02/1' /></div>Frieda Reichsmanhttps://proteopedia.org/index.php?title=User:Frieda_Reichsman/Sandbox_1&diff=3279648User:Frieda Reichsman/Sandbox 12020-08-16T17:29:39Z<p>Frieda Reichsman: </p>
<hr />
<div><scene name='38/389917/Openingview/1'>Opening view with surface hidden</scene><br />
<br />
<jmol><br />
<jmolButton><br />
<script>select protein; cpk;</script><br />
<text>Spacefill</text><br />
</jmolButton><br />
</jmol><br />
<br />
<jmol><br />
<jmolButton><br />
<script> var a = [10,20,30,40,50,60,70,80,90,100]; for(var i IN a) {select backbone; spacefill @i%; delay 0.1;}<br />
</script><br />
<text>Fade in backbone atoms</text><br />
</jmolButton><br />
</jmol><br />
<br />
<jmol><br />
<jmolButton><br />
<script> var a = [10,20,30,40,50,60,70,80,90,100]; for(var i IN a) {select sidechain; spacefill @i%; delay 0.1;}<br />
</script><br />
<text>Spacefill fade in sidechain atoms</text><br />
</jmolButton><br />
</jmol><br />
<br />
===Surface fade code-in-page versions===<br />
<br />
While not templates, carry out similar functions as the `Surface Fade` templates and may be useful for further development or as examples of using Jmol coding in Proteopedia pages.<br />
<br />
<jmol><br />
<jmolLink><br />
<script> var a = [1,2,3,4,5,6,7,8]; for(var i IN a) {isosurface translucent @i; delay 0.4;}<br />
</script><br />
<text>Fade surface to invisible</text><br />
</jmolLink><br />
</jmol> (basic)<br />
<br />
<jmol><br />
<jmolLink><br />
<script> set ribbonborder on; set antialiasdisplay on; var a = [1,2,3,4,5,6,7,8]; for(var i IN a) {isosurface translucent @i; delay 0.4;}<br />
</script><br />
<text>Fade surface to invisible</text><br />
</jmolLink><br />
</jmol> (with fancy cartoons)<br />
<br />
<jmol><br />
<jmolLink><br />
<script> var a = [8,7,6,5,4,3,2,1,0]; for(var i IN a) {isosurface translucent @i; delay 0.4;}<br />
</script><br />
<text>Fade back to surface opaque</text><br />
</jmolLink><br />
</jmol><br />
<br />
<br />
<scene name='38/389917/Openingview02/1'>Reset opening view</scene><br />
<br />
<applet load='1uwx' size='300' frame='true' align='right' caption='Protein G. But not a G protein... Really?' scene ='38/389917/Openingview02/1' /></div>Frieda Reichsmanhttps://proteopedia.org/index.php?title=User:Frieda_Reichsman/Sandbox_1&diff=3270467User:Frieda Reichsman/Sandbox 12020-07-24T21:04:08Z<p>Frieda Reichsman: </p>
<hr />
<div><scene name='38/389917/Openingview/1'>Opening view with surface hidden</scene><br />
<br />
<jmol><br />
<jmolButton><br />
<script>select protein; cpk;</script><br />
<text>Spacefill</text><br />
</jmolButton><br />
</jmol><br />
<br />
<jmol><br />
<jmolButton><br />
<script> var a = [10,20,30,40,50,60,70,80,90,100]; for(var i IN a) {select backbone; spacefill @i%; delay 0.1;}<br />
</script><br />
<text>Fade in backbone atoms</text><br />
</jmolButton><br />
</jmol><br />
<br />
<jmol><br />
<jmolButton><br />
<script> var a = [10,20,30,40,50,60,70,80,90,100]; for(var i IN a) {select sidechain; spacefill @i%; delay 0.1;}<br />
</script><br />
<text>Spacefill fade in sidechain atoms</text><br />
</jmolButton><br />
</jmol><br />
<br />
<br />
===Surface fade code-in-page versions===<br />
<br />
While not templates, carry out similar functions as the `Surface Fade` templates and may be useful for further development or as examples of using Jmol coding in Proteopedia pages.<br />
<br />
<jmol><br />
<jmolLink><br />
<script> var a = [1,2,3,4,5,6,7,8]; for(var i IN a) {isosurface translucent @i; delay 0.4;}<br />
</script><br />
<text>Fade surface to invisible</text><br />
</jmolLink><br />
</jmol> (basic)<br />
<br />
<jmol><br />
<jmolLink><br />
<script> set ribbonborder on; set antialiasdisplay on; var a = [1,2,3,4,5,6,7,8]; for(var i IN a) {isosurface translucent @i; delay 0.4;}<br />
</script><br />
<text>Fade surface to invisible</text><br />
</jmolLink><br />
</jmol> (with fancy cartoons)<br />
<br />
<jmol><br />
<jmolLink><br />
<script> var a = [8,7,6,5,4,3,2,1,0]; for(var i IN a) {isosurface translucent @i; delay 0.4;}<br />
</script><br />
<text>Fade back to surface opaque</text><br />
</jmolLink><br />
</jmol><br />
<br />
<br />
<scene name='38/389917/Openingview02/1'>Reset opening view</scene><br />
<br />
<applet load='1uwx' size='300' frame='true' align='right' caption='Protein G. But not a G protein... Really?' scene ='38/389917/Openingview02/1' /></div>Frieda Reichsmanhttps://proteopedia.org/index.php?title=User:Frieda_Reichsman/Sandbox_1&diff=3270466User:Frieda Reichsman/Sandbox 12020-07-24T21:03:29Z<p>Frieda Reichsman: </p>
<hr />
<div><scene name='38/389917/Openingview/1'>TextToBeDisplayed</scene><br />
<br />
<jmol><br />
<jmolButton><br />
<script>select protein; cpk;</script><br />
<text>Spacefill</text><br />
</jmolButton><br />
</jmol><br />
<br />
<jmol><br />
<jmolButton><br />
<script> var a = [10,20,30,40,50,60,70,80,90,100]; for(var i IN a) {select backbone; spacefill @i%; delay 0.1;}<br />
</script><br />
<text>Fade in backbone atoms</text><br />
</jmolButton><br />
</jmol><br />
<br />
<jmol><br />
<jmolButton><br />
<script> var a = [10,20,30,40,50,60,70,80,90,100]; for(var i IN a) {select sidechain; spacefill @i%; delay 0.1;}<br />
</script><br />
<text>Spacefill fade in sidechain atoms</text><br />
</jmolButton><br />
</jmol><br />
<br />
<br />
===Surface fade code-in-page versions===<br />
<br />
While not templates, carry out similar functions as the `Surface Fade` templates and may be useful for further development or as examples of using Jmol coding in Proteopedia pages.<br />
<br />
<jmol><br />
<jmolLink><br />
<script> var a = [1,2,3,4,5,6,7,8]; for(var i IN a) {isosurface translucent @i; delay 0.4;}<br />
</script><br />
<text>Fade surface to invisible</text><br />
</jmolLink><br />
</jmol> (basic)<br />
<br />
<jmol><br />
<jmolLink><br />
<script> set ribbonborder on; set antialiasdisplay on; var a = [1,2,3,4,5,6,7,8]; for(var i IN a) {isosurface translucent @i; delay 0.4;}<br />
</script><br />
<text>Fade surface to invisible</text><br />
</jmolLink><br />
</jmol> (with fancy cartoons)<br />
<br />
<jmol><br />
<jmolLink><br />
<script> var a = [8,7,6,5,4,3,2,1,0]; for(var i IN a) {isosurface translucent @i; delay 0.4;}<br />
</script><br />
<text>Fade back to surface opaque</text><br />
</jmolLink><br />
</jmol><br />
<br />
<br />
<scene name='38/389917/Openingview02/1'>Reset opening view</scene><br />
<br />
<applet load='1uwx' size='300' frame='true' align='right' caption='Protein G. But not a G protein... Really?' scene ='38/389917/Openingview02/1' /></div>Frieda Reichsmanhttps://proteopedia.org/index.php?title=User:Frieda_Reichsman/Sandbox_1&diff=3270460User:Frieda Reichsman/Sandbox 12020-07-24T20:20:01Z<p>Frieda Reichsman: </p>
<hr />
<div><jmol><br />
<jmolButton><br />
<script>select protein; cpk;</script><br />
<text>Spacefill</text><br />
</jmolButton><br />
</jmol><br />
<br />
<jmol><br />
<jmolButton><br />
<script> var a = [10,20,30,40,50,60,70,80,90,100]; for(var i IN a) {select backbone; spacefill @i%; delay 0.1;}<br />
</script><br />
<text>Fade in backbone atoms</text><br />
</jmolButton><br />
</jmol><br />
<br />
<jmol><br />
<jmolButton><br />
<script> var a = [10,20,30,40,50,60,70,80,90,100]; for(var i IN a) {select sidechain; spacefill @i%; delay 0.1;}<br />
</script><br />
<text>Spacefill fade in sidechain atoms</text><br />
</jmolButton><br />
</jmol><br />
<br />
<br />
===Surface fade code-in-page versions===<br />
<br />
While not templates, carry out similar functions as the `Surface Fade` templates and may be useful for further development or as examples of using Jmol coding in Proteopedia pages.<br />
<br />
<jmol><br />
<jmolLink><br />
<script> var a = [1,2,3,4,5,6,7,8]; for(var i IN a) {isosurface translucent @i; delay 0.4;}<br />
</script><br />
<text>Fade surface to invisible</text><br />
</jmolLink><br />
</jmol> (basic)<br />
<br />
<jmol><br />
<jmolLink><br />
<script> set ribbonborder on; set antialiasdisplay on; var a = [1,2,3,4,5,6,7,8]; for(var i IN a) {isosurface translucent @i; delay 0.4;}<br />
</script><br />
<text>Fade surface to invisible</text><br />
</jmolLink><br />
</jmol> (with fancy cartoons)<br />
<br />
<jmol><br />
<jmolLink><br />
<script> var a = [8,7,6,5,4,3,2,1,0]; for(var i IN a) {isosurface translucent @i; delay 0.4;}<br />
</script><br />
<text>Fade back to surface opaque</text><br />
</jmolLink><br />
</jmol><br />
<br />
<br />
<scene name='38/389917/Openingview02/1'>Reset opening view</scene><br />
<br />
<applet load='1uwx' size='300' frame='true' align='right' caption='Protein G. But not a G protein... Really?' scene ='38/389917/Openingview02/1' /></div>Frieda Reichsmanhttps://proteopedia.org/index.php?title=User:Frieda_Reichsman/Sandbox_1&diff=3270459User:Frieda Reichsman/Sandbox 12020-07-24T20:17:58Z<p>Frieda Reichsman: </p>
<hr />
<div><jmol><br />
<jmolButton><br />
<script>select protein; cpk;</script><br />
<text>Spacefill</text><br />
</jmolButton><br />
</jmol><br />
<br />
<jmol><br />
<jmolButton><br />
<script> var a = [10,20,30,40,50,60,70,80,90,100]; for(var i IN a) {select backbone; spacefill @i%; delay 0.1; delay 0.5; select sidechain; spacefill @i%; delay 0.1;}<br />
</script><br />
<text>Spacefill fade in</text><br />
</jmolButton><br />
</jmol><br />
<br />
===Surface fade code-in-page versions===<br />
<br />
While not templates, carry out similar functions as the `Surface Fade` templates and may be useful for further development or as examples of using Jmol coding in Proteopedia pages.<br />
<br />
<jmol><br />
<jmolLink><br />
<script> var a = [1,2,3,4,5,6,7,8]; for(var i IN a) {isosurface translucent @i; delay 0.4;}<br />
</script><br />
<text>Fade surface to invisible</text><br />
</jmolLink><br />
</jmol> (basic)<br />
<br />
<jmol><br />
<jmolLink><br />
<script> set ribbonborder on; set antialiasdisplay on; var a = [1,2,3,4,5,6,7,8]; for(var i IN a) {isosurface translucent @i; delay 0.4;}<br />
</script><br />
<text>Fade surface to invisible</text><br />
</jmolLink><br />
</jmol> (with fancy cartoons)<br />
<br />
<jmol><br />
<jmolLink><br />
<script> var a = [8,7,6,5,4,3,2,1,0]; for(var i IN a) {isosurface translucent @i; delay 0.4;}<br />
</script><br />
<text>Fade back to surface opaque</text><br />
</jmolLink><br />
</jmol><br />
<br />
<br />
<scene name='38/389917/Openingview02/1'>Reset opening view</scene><br />
<br />
<applet load='1uwx' size='300' frame='true' align='right' caption='Protein G. But not a G protein... Really?' scene ='38/389917/Openingview02/1' /></div>Frieda Reichsmanhttps://proteopedia.org/index.php?title=User:Frieda_Reichsman/Sandbox_1&diff=3270458User:Frieda Reichsman/Sandbox 12020-07-24T20:17:10Z<p>Frieda Reichsman: </p>
<hr />
<div><jmol><br />
<jmolButton><br />
<script>select protein; cpk;</script><br />
<text>Spacefill</text><br />
</jmolButton><br />
</jmol><br />
<br />
<jmol><br />
<jmolButton><br />
<script> var a = [10,20,30,40,50,60,70,80,90,100]; for(var i IN a) {select backbone; spacefill @i%; delay 0.1; color red; select sidechain; spacefill @i%; delay 0.1;}<br />
</script><br />
<text>Spacefill fade in</text><br />
</jmolButton><br />
</jmol><br />
<br />
===Surface fade code-in-page versions===<br />
<br />
While not templates, carry out similar functions as the `Surface Fade` templates and may be useful for further development or as examples of using Jmol coding in Proteopedia pages.<br />
<br />
<jmol><br />
<jmolLink><br />
<script> var a = [1,2,3,4,5,6,7,8]; for(var i IN a) {isosurface translucent @i; delay 0.4;}<br />
</script><br />
<text>Fade surface to invisible</text><br />
</jmolLink><br />
</jmol> (basic)<br />
<br />
<jmol><br />
<jmolLink><br />
<script> set ribbonborder on; set antialiasdisplay on; var a = [1,2,3,4,5,6,7,8]; for(var i IN a) {isosurface translucent @i; delay 0.4;}<br />
</script><br />
<text>Fade surface to invisible</text><br />
</jmolLink><br />
</jmol> (with fancy cartoons)<br />
<br />
<jmol><br />
<jmolLink><br />
<script> var a = [8,7,6,5,4,3,2,1,0]; for(var i IN a) {isosurface translucent @i; delay 0.4;}<br />
</script><br />
<text>Fade back to surface opaque</text><br />
</jmolLink><br />
</jmol><br />
<br />
<br />
<scene name='38/389917/Openingview02/1'>Reset opening view</scene><br />
<br />
<applet load='1uwx' size='300' frame='true' align='right' caption='Protein G. But not a G protein... Really?' scene ='38/389917/Openingview02/1' /></div>Frieda Reichsmanhttps://proteopedia.org/index.php?title=User:Frieda_Reichsman/Sandbox_1&diff=3270455User:Frieda Reichsman/Sandbox 12020-07-24T19:32:13Z<p>Frieda Reichsman: </p>
<hr />
<div><jmol><br />
<jmolButton><br />
<script>select protein; cpk;</script><br />
<text>Spacefill</text><br />
</jmolButton><br />
</jmol><br />
<br />
<jmol><br />
<jmolButton><br />
<script> var a = [10,20,30,40,50,60,70,80,90,100]; for(var i IN a) {select backbone; spacefill @i%; delay 0.1; select sidechain; spacefill @i%; delay 0.1;}<br />
</script><br />
<text>Spacefill fade in</text><br />
</jmolButton><br />
</jmol><br />
<br />
===Surface fade code-in-page versions===<br />
<br />
While not templates, carry out similar functions as the `Surface Fade` templates and may be useful for further development or as examples of using Jmol coding in Proteopedia pages.<br />
<br />
<jmol><br />
<jmolLink><br />
<script> var a = [1,2,3,4,5,6,7,8]; for(var i IN a) {isosurface translucent @i; delay 0.4;}<br />
</script><br />
<text>Fade surface to invisible</text><br />
</jmolLink><br />
</jmol> (basic)<br />
<br />
<jmol><br />
<jmolLink><br />
<script> set ribbonborder on; set antialiasdisplay on; var a = [1,2,3,4,5,6,7,8]; for(var i IN a) {isosurface translucent @i; delay 0.4;}<br />
</script><br />
<text>Fade surface to invisible</text><br />
</jmolLink><br />
</jmol> (with fancy cartoons)<br />
<br />
<jmol><br />
<jmolLink><br />
<script> var a = [8,7,6,5,4,3,2,1,0]; for(var i IN a) {isosurface translucent @i; delay 0.4;}<br />
</script><br />
<text>Fade back to surface opaque</text><br />
</jmolLink><br />
</jmol><br />
<br />
<br />
<scene name='38/389917/Openingview02/1'>Reset opening view</scene><br />
<br />
<applet load='1uwx' size='300' frame='true' align='right' caption='Protein G. But not a G protein... Really?' scene ='38/389917/Openingview02/1' /></div>Frieda Reichsmanhttps://proteopedia.org/index.php?title=User:Frieda_Reichsman/Sandbox_1&diff=3270452User:Frieda Reichsman/Sandbox 12020-07-24T18:13:53Z<p>Frieda Reichsman: </p>
<hr />
<div><jmol><br />
<jmolButton><br />
<script>select protein; cpk;</script><br />
<text>Spacefill</text><br />
</jmolButton><br />
</jmol><br />
<br />
===Surface fade code-in-page versions===<br />
<br />
While not templates, carry out similar functions as the `Surface Fade` templates and may be useful for further development or as examples of using Jmol coding in Proteopedia pages.<br />
<br />
<jmol><br />
<jmolLink><br />
<script> var a = [1,2,3,4,5,6,7,8]; for(var i IN a) {isosurface translucent @i; delay 0.4;}<br />
</script><br />
<text>Fade surface to invisible</text><br />
</jmolLink><br />
</jmol> (basic)<br />
<br />
<jmol><br />
<jmolLink><br />
<script> set ribbonborder on; set antialiasdisplay on; var a = [1,2,3,4,5,6,7,8]; for(var i IN a) {isosurface translucent @i; delay 0.4;}<br />
</script><br />
<text>Fade surface to invisible</text><br />
</jmolLink><br />
</jmol> (with fancy cartoons)<br />
<br />
<jmol><br />
<jmolLink><br />
<script> var a = [8,7,6,5,4,3,2,1,0]; for(var i IN a) {isosurface translucent @i; delay 0.4;}<br />
</script><br />
<text>Fade back to surface opaque</text><br />
</jmolLink><br />
</jmol><br />
<br />
<br />
<scene name='38/389917/Openingview02/1'>Reset opening view</scene><br />
<br />
<applet load='1uwx' size='300' frame='true' align='right' caption='Protein G. But not a G protein... Really?' scene ='38/389917/Openingview02/1' /></div>Frieda Reichsmanhttps://proteopedia.org/index.php?title=User:Frieda_Reichsman/Sandbox_1&diff=3264581User:Frieda Reichsman/Sandbox 12020-07-14T11:33:08Z<p>Frieda Reichsman: </p>
<hr />
<div><jmol><br />
<jmolButton><br />
<script>select protein; cpk;</script><br />
<text>Spacefill</text><br />
</jmolButton><br />
</jmol><br />
<br />
<br />
<br />
<br />
<scene name='38/389917/Openingview02/1'>Reset opening view</scene><br />
<br />
<applet load='1uwx' size='300' frame='true' align='right' caption='Protein G. But not a G protein... Really?' scene ='38/389917/Openingview02/1' /></div>Frieda Reichsmanhttps://proteopedia.org/index.php?title=User:Frieda_Reichsman/Sandbox_1&diff=3264580User:Frieda Reichsman/Sandbox 12020-07-14T11:31:38Z<p>Frieda Reichsman: </p>
<hr />
<div>No idea how to do this, really.<br />
<br />
<jmol><br />
<jmolButton><br />
<script>select protein; cpk;</script><br />
<text>Spacefill</text><br />
</jmolButton><br />
</jmol><br />
<br />
<br />
<br />
<br />
<scene name='38/389917/Openingview02/1'>Reset opening view</scene><br />
<br />
<applet load='1uwx' size='300' frame='true' align='right' caption='Protein G. But not a G protein... Really?' scene ='38/389917/Openingview02/1' /></div>Frieda Reichsmanhttps://proteopedia.org/index.php?title=User:Frieda_Reichsman/Sandbox_1&diff=3264575User:Frieda Reichsman/Sandbox 12020-07-14T11:10:48Z<p>Frieda Reichsman: </p>
<hr />
<div>No idea how to do this, really.<br />
<br />
<jmol><br />
<jmolButton><br />
<script>select protein; cpk;</script><br />
<text>Spacefill</text><br />
</jmolButton><br />
</jmol><br />
<br />
<br />
<br />
<br />
<scene name='38/389917/Openingview/1'>Reset opening view</scene><br />
<br />
<applet load='1uwx' size='300' frame='true' align='right' caption='Protein G. But not a G protein... Really?' scene ='38/389917/Openingview/1' /></div>Frieda Reichsmanhttps://proteopedia.org/index.php?title=User:Frieda_Reichsman/Sandbox_1&diff=3264476User:Frieda Reichsman/Sandbox 12020-07-13T22:35:44Z<p>Frieda Reichsman: </p>
<hr />
<div>No idea how to do this, really.<br />
<br />
<jmol><br />
<jmolAppletButton><br />
<script>background white</script><br />
<text>Button 01</text><br />
</jmolAppletButton><br />
</jmol><br />
<br />
<br />
<br />
<br />
<scene name='38/389917/Openingview/1'>Reset opening view</scene><br />
<br />
<applet load='1uwx' size='300' frame='true' align='right' caption='Insert caption here' scene ='38/389917/Openingview/1' /></div>Frieda Reichsmanhttps://proteopedia.org/index.php?title=User:Frieda_Reichsman/Sandbox_1&diff=3264475User:Frieda Reichsman/Sandbox 12020-07-13T22:34:14Z<p>Frieda Reichsman: </p>
<hr />
<div>No idea how to do this, really.<br />
<br />
<jmol><br />
<jmolAppletButton><br />
<script>background white</script><br />
<text>Button 01</text><br />
</jmolAppletButton><br />
</jmol><br />
<br />
<br />
<br />
<br />
<scene name='38/389917/Openingview/1'>Reset opening view</scene><br />
<br />
<applet load='1uwx' size='300' frame='true' align='right' caption='Insert caption here' /></div>Frieda Reichsmanhttps://proteopedia.org/index.php?title=User:Frieda_Reichsman/Sandbox_1&diff=3264474User:Frieda Reichsman/Sandbox 12020-07-13T22:27:36Z<p>Frieda Reichsman: </p>
<hr />
<div>No idea how to do this, really.<br />
<br />
<br />
<br />
<br />
<br />
<scene name='38/389917/Openingview/1'>Reset opening view</scene><br />
<br />
<applet load='1uwx' size='300' frame='true' align='right' caption='Insert caption here' /></div>Frieda Reichsmanhttps://proteopedia.org/index.php?title=User:Frieda_Reichsman/Sandbox_1&diff=3264473User:Frieda Reichsman/Sandbox 12020-07-13T22:21:37Z<p>Frieda Reichsman: </p>
<hr />
<div>No idea how to do this, really.<br />
<br />
<br />
<br />
<br />
<br />
<scene name='38/389917/Openingview/1'>Reset opening view</scene><br />
<br />
<applet load='1FSR' size='300' frame='true' align='right' caption='Insert caption here' /><br />
*This is my <scene name='User:Frieda_S._Reichsman/Sandbox_1/Scene1/1'>Scene 1/1</scene>. Both transitions enabled (default state).<br />
*This is my <scene name='User:Frieda_S._Reichsman/Sandbox_1/Scene1/2'>Scene 1/2</scene>. Skips the zoom out.<br />
*This is my <scene name='User:Frieda_S._Reichsman/Sandbox_1/Scene1/3'>Scene 1/3</scene>. Skips the zoom out and the "transition", i.e., the moveto.<br />
<br />
<applet load='1FSR' size='300' frame='true' align='right' caption='Insert caption here' scene='User:Frieda_S._Reichsman/Sandbox_1/Scene1/1' /></div>Frieda Reichsmanhttps://proteopedia.org/index.php?title=Sandbox_FR01&diff=1119194Sandbox FR012010-09-14T09:39:11Z<p>Frieda Reichsman: </p>
<hr />
<div><br />
<applet load='3fsr' size='300' frame='true' align='right' caption='Insert caption here' />This is the <scene name='Sandbox_FR01/Scene_i/3'>first green link view</scene> on this page.</div>Frieda Reichsmanhttps://proteopedia.org/index.php?title=Sandbox_FR01&diff=1119193Sandbox FR012010-09-14T09:38:06Z<p>Frieda Reichsman: </p>
<hr />
<div><br />
<br />
This is the <scene name='Sandbox_FR01/Scene_i/3'>first green link view</scene> on this page.</div>Frieda Reichsmanhttps://proteopedia.org/index.php?title=Sandbox_FR01&diff=1119191Sandbox FR012010-09-14T09:30:26Z<p>Frieda Reichsman: New page: ==This is a placeholder== This is a placeholder text to help you get started in placing a Jmol applet on your page. At any time, click "Show Preview" at the bottom of this page to see how...</p>
<hr />
<div>==This is a placeholder==<br />
This is a placeholder text to help you get started in <br />
placing a Jmol applet on your page. At any time, click<br />
"Show Preview" at the bottom of this page to see how it goes.<br />
<br />
Replace the PDB id (use lowercase!) after the STRUCTURE_ and after PDB= to load <br />
and display another structure.<br />
<br />
{{STRUCTURE_3cin | PDB=3cin | SCENE= }}</div>Frieda Reichsmanhttps://proteopedia.org/index.php?title=User:Frieda_Reichsman/Sandbox_1&diff=1055721User:Frieda Reichsman/Sandbox 12010-03-13T20:26:56Z<p>Frieda Reichsman: </p>
<hr />
<div><applet load='1FSR' size='300' frame='true' align='right' caption='Insert caption here' /><br />
*This is my <scene name='User:Frieda_S._Reichsman/Sandbox_1/Scene1/1'>Scene 1/1</scene>. Both transitions enabled (default state).<br />
*This is my <scene name='User:Frieda_S._Reichsman/Sandbox_1/Scene1/2'>Scene 1/2</scene>. Skips the zoom out.<br />
*This is my <scene name='User:Frieda_S._Reichsman/Sandbox_1/Scene1/3'>Scene 1/3</scene>. Skips the zoom out and the "transition", i.e., the moveto.<br />
<br />
<applet load='1FSR' size='300' frame='true' align='right' caption='Insert caption here' scene='User:Frieda_S._Reichsman/Sandbox_1/Scene1/1' /></div>Frieda Reichsmanhttps://proteopedia.org/index.php?title=User:Frieda_Reichsman/Sandbox_1&diff=1055720User:Frieda Reichsman/Sandbox 12010-03-13T20:24:14Z<p>Frieda Reichsman: </p>
<hr />
<div><applet load='1FSR' size='300' frame='true' align='right' caption='Insert caption here' /><br />
*This is my <scene name='User:Frieda_S._Reichsman/Sandbox_1/Scene1/1'>Scene 1/1</scene>. Both transitions enabled (default state).<br />
*This is my <scene name='User:Frieda_S._Reichsman/Sandbox_1/Scene1/2'>Scene 1/2</scene>. Skips the zoom out.<br />
*This is my <scene name='User:Frieda_S._Reichsman/Sandbox_1/Scene1/3'>Scene 1/3</scene>. Skips the zoom out and the "transition", i.e., the moveto.</div>Frieda Reichsmanhttps://proteopedia.org/index.php?title=User:Frieda_Reichsman/Sandbox_1&diff=1055719User:Frieda Reichsman/Sandbox 12010-03-13T20:23:08Z<p>Frieda Reichsman: </p>
<hr />
<div><applet load='1FSR' size='300' frame='true' align='right' caption='Insert caption here' /><br />
*This is my <scene name='User:Frieda_S._Reichsman/Sandbox_1/Scene1/1'>Scene 1/1</scene>.<br />
*This is my <scene name='User:Frieda_S._Reichsman/Sandbox_1/Scene1/2'>Scene 1/2</scene>.<br />
*This is my <scene name='User:Frieda_S._Reichsman/Sandbox_1/Scene1/3'>Scene 1/3</scene>.</div>Frieda Reichsmanhttps://proteopedia.org/index.php?title=User:Frieda_Reichsman/Sandbox_1&diff=1055718User:Frieda Reichsman/Sandbox 12010-03-13T20:20:33Z<p>Frieda Reichsman: </p>
<hr />
<div><applet load='1FSR' size='300' frame='true' align='right' caption='Insert caption here' /><br />
This is my <scene name='User:Frieda_S._Reichsman/Sandbox_1/Scene1/1'>Scene 1/1</scene>.<br />
This is my <scene name='User:Frieda_S._Reichsman/Sandbox_1/Scene1/2'>Scene 1/2</scene>.</div>Frieda Reichsmanhttps://proteopedia.org/index.php?title=User:Frieda_Reichsman/Sandbox_1&diff=1055717User:Frieda Reichsman/Sandbox 12010-03-13T20:18:29Z<p>Frieda Reichsman: </p>
<hr />
<div><applet load='1FSR' size='300' frame='true' align='right' caption='Insert caption here' />This is my <scene name='User:Frieda_S._Reichsman/Sandbox_1/Scene1/2'>Initial View</scene>.</div>Frieda Reichsmanhttps://proteopedia.org/index.php?title=User:Frieda_Reichsman/Sandbox_1&diff=1055716User:Frieda Reichsman/Sandbox 12010-03-13T20:15:39Z<p>Frieda Reichsman: </p>
<hr />
<div><applet load='1FSR' size='300' frame='true' align='right' caption='Insert caption here' />This is my <scene name='User:Frieda_S._Reichsman/Sandbox_1/Scene1/1'>Initial View</scene>.</div>Frieda Reichsmanhttps://proteopedia.org/index.php?title=User:Frieda_Reichsman/Sandbox_1&diff=1055715User:Frieda Reichsman/Sandbox 12010-03-13T20:03:39Z<p>Frieda Reichsman: </p>
<hr />
<div>This is my <scene name='User:Frieda_S._Reichsman/Sandbox_1/Scene1/1'>Initial View</scene>.</div>Frieda Reichsmanhttps://proteopedia.org/index.php?title=User:Frieda_Reichsman&diff=1055714User:Frieda Reichsman2010-03-13T19:56:10Z<p>Frieda Reichsman: </p>
<hr />
<div>[[User:Frieda S. Reichsman/Sandbox 1]]<br />
<br />
<big> [[User:Frieda S. Reichsman/PALM|PALM Workshop page]]<br />
</big><br />
<br />
<br />
[http://moleculesinmotion.com MoleculesInMotion.Com]<br />
<br />
<!-- links to pages within Proteopedia: [[page name|link label]]<br />
links to external url's: [http://... link label]<br />
<br />
Click the "3D" button above the wikitext box to insert a Jmol<br />
--><br />
<applet load='2fsr' size='300' frame='true' align='right' caption='Insert caption here' /><br />
<br />
*<scene name='User:Frieda_S._Reichsman/2rh1/1'>Scene 1 for MW</scene><br />
*<scene name='User:Frieda_S._Reichsman/2rh1/2'>Scene 2 for MW</scene></div>Frieda Reichsmanhttps://proteopedia.org/index.php?title=User:Frieda_Reichsman&diff=1055713User:Frieda Reichsman2010-03-13T19:55:53Z<p>Frieda Reichsman: </p>
<hr />
<div>[[Editing User:Frieda S. Reichsman/Sandbox 1]]<br />
<br />
<big> [[User:Frieda S. Reichsman/PALM|PALM Workshop page]]<br />
</big><br />
<br />
<br />
[http://moleculesinmotion.com MoleculesInMotion.Com]<br />
<br />
<!-- links to pages within Proteopedia: [[page name|link label]]<br />
links to external url's: [http://... link label]<br />
<br />
Click the "3D" button above the wikitext box to insert a Jmol<br />
--><br />
<applet load='2fsr' size='300' frame='true' align='right' caption='Insert caption here' /><br />
<br />
*<scene name='User:Frieda_S._Reichsman/2rh1/1'>Scene 1 for MW</scene><br />
*<scene name='User:Frieda_S._Reichsman/2rh1/2'>Scene 2 for MW</scene></div>Frieda Reichsmanhttps://proteopedia.org/index.php?title=User:Frieda_Reichsman/Sandbox_1&diff=1055712User:Frieda Reichsman/Sandbox 12010-03-13T19:54:28Z<p>Frieda Reichsman: New page: xxx</p>
<hr />
<div>xxx</div>Frieda Reichsmanhttps://proteopedia.org/index.php?title=User:Frieda_Reichsman/PALM&diff=973080User:Frieda Reichsman/PALM2009-06-24T02:19:58Z<p>Frieda Reichsman: </p>
<hr />
<div>== The Science of Atoms & Molecules Project: Guided Inquiry with The Molecular Workbench ==<br />
<br />
'''This page links resources presented at the [http://www.rpc.msoe.edu/cbm/currentprograms/nsfpalm.php Proteins in Active Learning Modules (PALM) Workshop] held at the Center for Biomolecular Modeling at the Milwaukee School of Engineering on June 17-19, 2009.'''<br />
<br />
<br />
<big> Web sites</big><br />
*[http://concord.org The Concord Consortium]<br />
*[http://moleculesinmotion.com Molecules in Motion]<br />
*[http://www3.interscience.wiley.com:8100/legacy/college/boyer/0471661791/structure/protein_dna/protein_dna.htm Protein-DNA Interactions]<br />
*[http://sam.concord.org/ The Science of Atoms and Molecules Project]<br />
* Also see this <b>Proteopedia</b> page highlighting [[Molecular_Workbench|features of Molecular Workbench]]<br />
<br />
<br />
<big> Molecular Workbench </big><br />
*[http://mw2.concord.org/tmp.jnlp?address=http://mw2.concord.org/public/index.cml The Molecular Workbench Home Page]<br />
SAM Activities:<br />
*[http://mw2.concord.org/tmp.jnlp?address=http://mw2.concord.org/public/part2/proteinfolding/index.cml Four Levels of Protein Structure] SAM Activity<br />
*[http://mw2.concord.org/tmp.jnlp?address=http://mw2.concord.org/public/part2/diffat/page2.cml Net Flow from Low to High] Simulation<br />
*[http://mw2.concord.org/tmp.jnlp?address=http://mw2.concord.org/public/part2/proteinfolding/page6.cml Protein Folding (2D)] Simulation<br />
*[http://mw2.concord.org/tmp.jnlp?address=http://mw2.concord.org/public/part2/proteinfolding/page9.cml Secondary Structure Stabilization] Embedded Jmol<br />
* [http://mw2.concord.org/tmp.jnlp?address=http://mw2.concord.org/public/part1/index.cml Science of Atoms and Molecules (SAM) Activity Center]<br />
<br />
Rover Activity:<br />
*[http://mw2.concord.org/tmp.jnlp?address=http://mw2.concord.org/public/part2/missimmu/index.cml Mission Immunity (Molecular Rover)]<br />
<br />
Teaching with Molecular Workbench:<br />
*[http://molecularmodelingbasics.blogspot.com/2009/06/do-i-have-to-draw-you-phase-diagram.html Jan Jensen (Univ. of Copenhagen) 2 min screencast on phase change]<br />
*[http://mw2.concord.org/tmp.jnlp?address=http://mw2.concord.org/public/student/gaslaws/cool.cml Neocles Leontis (Bowling Green State Univ.) student models - gas law example]<br />
<br />
<br />
<br />
SAM is only a small part of MW. A good place to find '''other MW activities''' is [http://workbench.concord.org/database workbench.concord.org/database].<br />
<br />
'''Questions?''' Contact me at freichsman at concord dot org!<br />
<br />
{| class="wikitable" align="left"<br />
|-<br />
| <big>Problems Running Molecular Workbench?</big><br />
* Make sure Java is installed: [http://java.com Download/Update].<br />
* Still not working?<!-- [http://molo.concord.org/software/overviewAndInstallation.htm#installCore More Help] / --> [http://mw.concord.org/modeler/faq.html FAQ].<br />
* Firewall problems? You can [http://mw.concord.org/modeler/faq.html#cdmode run MW offline].<br />
|}</div>Frieda Reichsmanhttps://proteopedia.org/index.php?title=User:Frieda_Reichsman/PALM&diff=973079User:Frieda Reichsman/PALM2009-06-24T02:18:32Z<p>Frieda Reichsman: </p>
<hr />
<div>== The Science of Atoms & Molecules Project: Guided Inquiry with The Molecular Workbench ==<br />
<br />
'''This page links resources presented at the Proteins in Active Learning Modules (PALM) Workshop held at the Center for Biomolecular Modeling at the Milwaukee School of Engineering on June 17-19, 2009.'''<br />
<br />
<big> Web sites</big><br />
*[http://concord.org The Concord Consortium]<br />
*[http://moleculesinmotion.com Molecules in Motion]<br />
*[http://www3.interscience.wiley.com:8100/legacy/college/boyer/0471661791/structure/protein_dna/protein_dna.htm Protein-DNA Interactions]<br />
*[http://sam.concord.org/ The Science of Atoms and Molecules Project]<br />
* Also see this <b>Proteopedia</b> page highlighting [[Molecular_Workbench|features of Molecular Workbench]]<br />
<br />
<br />
<big> Molecular Workbench </big><br />
*[http://mw2.concord.org/tmp.jnlp?address=http://mw2.concord.org/public/index.cml The Molecular Workbench Home Page]<br />
SAM Activities:<br />
*[http://mw2.concord.org/tmp.jnlp?address=http://mw2.concord.org/public/part2/proteinfolding/index.cml Four Levels of Protein Structure] SAM Activity<br />
*[http://mw2.concord.org/tmp.jnlp?address=http://mw2.concord.org/public/part2/diffat/page2.cml Net Flow from Low to High] Simulation<br />
*[http://mw2.concord.org/tmp.jnlp?address=http://mw2.concord.org/public/part2/proteinfolding/page6.cml Protein Folding (2D)] Simulation<br />
*[http://mw2.concord.org/tmp.jnlp?address=http://mw2.concord.org/public/part2/proteinfolding/page9.cml Secondary Structure Stabilization] Embedded Jmol<br />
* [http://mw2.concord.org/tmp.jnlp?address=http://mw2.concord.org/public/part1/index.cml Science of Atoms and Molecules (SAM) Activity Center]<br />
<br />
Rover Activity:<br />
*[http://mw2.concord.org/tmp.jnlp?address=http://mw2.concord.org/public/part2/missimmu/index.cml Mission Immunity (Molecular Rover)]<br />
<br />
Teaching with Molecular Workbench:<br />
*[http://molecularmodelingbasics.blogspot.com/2009/06/do-i-have-to-draw-you-phase-diagram.html Jan Jensen (Univ. of Copenhagen) 2 min screencast on phase change]<br />
*[http://mw2.concord.org/tmp.jnlp?address=http://mw2.concord.org/public/student/gaslaws/cool.cml Neocles Leontis (Bowling Green State Univ.) student models - gas law example]<br />
<br />
<br />
<br />
SAM is only a small part of MW. A good place to find '''other MW activities''' is [http://workbench.concord.org/database workbench.concord.org/database].<br />
<br />
'''Questions?''' Contact me at freichsman at concord dot org!<br />
<br />
{| class="wikitable" align="left"<br />
|-<br />
| <big>Problems Running Molecular Workbench?</big><br />
* Make sure Java is installed: [http://java.com Download/Update].<br />
* Still not working?<!-- [http://molo.concord.org/software/overviewAndInstallation.htm#installCore More Help] / --> [http://mw.concord.org/modeler/faq.html FAQ].<br />
* Firewall problems? You can [http://mw.concord.org/modeler/faq.html#cdmode run MW offline].<br />
|}</div>Frieda Reichsmanhttps://proteopedia.org/index.php?title=User:Frieda_Reichsman/PALM&diff=973078User:Frieda Reichsman/PALM2009-06-24T02:18:09Z<p>Frieda Reichsman: </p>
<hr />
<div>'''This page links resources presented at the Proteins in Active Learning Modules (PALM) Workshop held at the Center for Biomolecular Modeling at the Milwaukee School of Engineering on June 17-19, 2009.'''<br />
<br />
== The Science of Atoms & Molecules Project: Guided Inquiry with The Molecular Workbench ==<br />
<br />
<big> Web sites</big><br />
*[http://concord.org The Concord Consortium]<br />
*[http://moleculesinmotion.com Molecules in Motion]<br />
*[http://www3.interscience.wiley.com:8100/legacy/college/boyer/0471661791/structure/protein_dna/protein_dna.htm Protein-DNA Interactions]<br />
*[http://sam.concord.org/ The Science of Atoms and Molecules Project]<br />
* Also see this <b>Proteopedia</b> page highlighting [[Molecular_Workbench|features of Molecular Workbench]]<br />
<br />
<br />
<big> Molecular Workbench </big><br />
*[http://mw2.concord.org/tmp.jnlp?address=http://mw2.concord.org/public/index.cml The Molecular Workbench Home Page]<br />
SAM Activities:<br />
*[http://mw2.concord.org/tmp.jnlp?address=http://mw2.concord.org/public/part2/proteinfolding/index.cml Four Levels of Protein Structure] SAM Activity<br />
*[http://mw2.concord.org/tmp.jnlp?address=http://mw2.concord.org/public/part2/diffat/page2.cml Net Flow from Low to High] Simulation<br />
*[http://mw2.concord.org/tmp.jnlp?address=http://mw2.concord.org/public/part2/proteinfolding/page6.cml Protein Folding (2D)] Simulation<br />
*[http://mw2.concord.org/tmp.jnlp?address=http://mw2.concord.org/public/part2/proteinfolding/page9.cml Secondary Structure Stabilization] Embedded Jmol<br />
* [http://mw2.concord.org/tmp.jnlp?address=http://mw2.concord.org/public/part1/index.cml Science of Atoms and Molecules (SAM) Activity Center]<br />
<br />
Rover Activity:<br />
*[http://mw2.concord.org/tmp.jnlp?address=http://mw2.concord.org/public/part2/missimmu/index.cml Mission Immunity (Molecular Rover)]<br />
<br />
Teaching with Molecular Workbench:<br />
*[http://molecularmodelingbasics.blogspot.com/2009/06/do-i-have-to-draw-you-phase-diagram.html Jan Jensen (Univ. of Copenhagen) 2 min screencast on phase change]<br />
*[http://mw2.concord.org/tmp.jnlp?address=http://mw2.concord.org/public/student/gaslaws/cool.cml Neocles Leontis (Bowling Green State Univ.) student models - gas law example]<br />
<br />
<br />
<br />
SAM is only a small part of MW. A good place to find '''other MW activities''' is [http://workbench.concord.org/database workbench.concord.org/database].<br />
<br />
'''Questions?''' Contact me at freichsman at concord dot org!<br />
<br />
{| class="wikitable" align="left"<br />
|-<br />
| <big>Problems Running Molecular Workbench?</big><br />
* Make sure Java is installed: [http://java.com Download/Update].<br />
* Still not working?<!-- [http://molo.concord.org/software/overviewAndInstallation.htm#installCore More Help] / --> [http://mw.concord.org/modeler/faq.html FAQ].<br />
* Firewall problems? You can [http://mw.concord.org/modeler/faq.html#cdmode run MW offline].<br />
|}</div>Frieda Reichsmanhttps://proteopedia.org/index.php?title=User:Frieda_Reichsman/PALM&diff=973076User:Frieda Reichsman/PALM2009-06-24T01:18:52Z<p>Frieda Reichsman: </p>
<hr />
<div>== Presentation: The Science of Atoms & Molecules Project: Guided Inquiry with The Molecular Workbench ==<br />
<br />
<big> Web sites</big><br />
*[http://concord.org The Concord Consortium]<br />
*[http://moleculesinmotion.com Molecules in Motion]<br />
*[http://www3.interscience.wiley.com:8100/legacy/college/boyer/0471661791/structure/protein_dna/protein_dna.htm Protein-DNA Interactions]<br />
*[http://sam.concord.org/ The Science of Atoms and Molecules Project]<br />
* Also see this <b>Proteopedia</b> page highlighting [[Molecular_Workbench|features of Molecular Workbench]]<br />
<br />
<br />
<big> Molecular Workbench </big><br />
*[http://mw2.concord.org/tmp.jnlp?address=http://mw2.concord.org/public/index.cml The Molecular Workbench Home Page]<br />
SAM Activities:<br />
*[http://mw2.concord.org/tmp.jnlp?address=http://mw2.concord.org/public/part2/proteinfolding/index.cml Four Levels of Protein Structure] SAM Activity<br />
*[http://mw2.concord.org/tmp.jnlp?address=http://mw2.concord.org/public/part2/diffat/page2.cml Net Flow from Low to High] Simulation<br />
*[http://mw2.concord.org/tmp.jnlp?address=http://mw2.concord.org/public/part2/proteinfolding/page6.cml Protein Folding (2D)] Simulation<br />
*[http://mw2.concord.org/tmp.jnlp?address=http://mw2.concord.org/public/part2/proteinfolding/page9.cml Secondary Structure Stabilization] Embedded Jmol<br />
* [http://mw2.concord.org/tmp.jnlp?address=http://mw2.concord.org/public/part1/index.cml Science of Atoms and Molecules (SAM) Activity Center]<br />
<br />
Rover Activity:<br />
*[http://mw2.concord.org/tmp.jnlp?address=http://mw2.concord.org/public/part2/missimmu/index.cml Mission Immunity (Molecular Rover)]<br />
<br />
Teaching with Molecular Workbench:<br />
*[http://molecularmodelingbasics.blogspot.com/2009/06/do-i-have-to-draw-you-phase-diagram.html Jan Jensen (Univ. of Copenhagen) 2 min screencast on phase change]<br />
*[http://mw2.concord.org/tmp.jnlp?address=http://mw2.concord.org/public/student/gaslaws/cool.cml Neocles Leontis (Bowling Green State Univ.) student models - gas law example]<br />
<br />
<br />
<br />
SAM is only a small part of MW. A good place to find '''other MW activities''' is [http://workbench.concord.org/database workbench.concord.org/database].<br />
<br />
'''Questions?''' Contact me at freichsman at concord dot org!<br />
<br />
{| class="wikitable" align="left"<br />
|-<br />
| <big>Problems Running Molecular Workbench?</big><br />
* Make sure Java is installed: [http://java.com Download/Update].<br />
* Still not working?<!-- [http://molo.concord.org/software/overviewAndInstallation.htm#installCore More Help] / --> [http://mw.concord.org/modeler/faq.html FAQ].<br />
* Firewall problems? You can [http://mw.concord.org/modeler/faq.html#cdmode run MW offline].<br />
|}</div>Frieda Reichsmanhttps://proteopedia.org/index.php?title=User:Frieda_Reichsman/PALM&diff=972154User:Frieda Reichsman/PALM2009-06-17T19:38:59Z<p>Frieda Reichsman: </p>
<hr />
<div>== Presentation: The Science of Atoms & Molecules Project: Guided Inquiry with The Molecular Workbench ==<br />
<br />
<big> Web sites</big><br />
*[http://concord.org The Concord Consortium]<br />
*[http://moleculesinmotion.com Molecules in Motion]<br />
*[http://www3.interscience.wiley.com:8100/legacy/college/boyer/0471661791/structure/protein_dna/protein_dna.htm Protein-DNA Interactions]<br />
*[http://sam.concord.org/ The Science of Atoms and Molecules Project]<br />
<br />
<br />
<big> Molecular Workbench </big><br />
*[http://mw2.concord.org/tmp.jnlp?address=http://mw2.concord.org/public/index.cml The Molecular Workbench Home Page]<br />
SAM Activities:<br />
*[http://mw2.concord.org/tmp.jnlp?address=http://mw2.concord.org/public/part2/proteinfolding/index.cml Four Levels of Protein Structure] SAM Activity<br />
*[http://mw2.concord.org/tmp.jnlp?address=http://mw2.concord.org/public/part2/diffat/page2.cml Net Flow from Low to High] Simulation<br />
*[http://mw2.concord.org/tmp.jnlp?address=http://mw2.concord.org/public/part2/proteinfolding/page6.cml Protein Folding (2D)] Simulation<br />
*[http://mw2.concord.org/tmp.jnlp?address=http://mw2.concord.org/public/part2/proteinfolding/page9.cml Secondary Structure Stabilization] Embedded Jmol<br />
* [http://mw2.concord.org/tmp.jnlp?address=http://mw2.concord.org/public/part1/index.cml Science of Atoms and Molecules (SAM) Activity Center]<br />
<br />
Rover Activity:<br />
*[http://mw2.concord.org/tmp.jnlp?address=http://mw2.concord.org/public/part2/missimmu/index.cml Mission Immunity (Molecular Rover)]<br />
<br />
Teaching with Molecular Workbench:<br />
*[http://molecularmodelingbasics.blogspot.com/2009/06/do-i-have-to-draw-you-phase-diagram.html Jan Jensen (Univ. of Copenhagen) 2 min screencast on phase change]<br />
*[http://mw2.concord.org/tmp.jnlp?address=http://mw2.concord.org/public/student/gaslaws/cool.cml Neocles Leontis (Bowling Green State Univ.) student models - gas law example]<br />
<br />
<br />
<br />
SAM is only a small part of MW. A good place to find '''other MW activities''' is [http://workbench.concord.org/database workbench.concord.org/database].<br />
<br />
'''Questions?''' Contact me at freichsman at concord dot org!<br />
<br />
{| class="wikitable" align="left"<br />
|-<br />
| <big>Problems Running Molecular Workbench?</big><br />
* Make sure Java is installed: [http://java.com Download/Update].<br />
* Still not working?<!-- [http://molo.concord.org/software/overviewAndInstallation.htm#installCore More Help] / --> [http://mw.concord.org/modeler/faq.html FAQ].<br />
* Firewall problems? You can [http://mw.concord.org/modeler/faq.html#cdmode run MW offline].<br />
|}</div>Frieda Reichsmanhttps://proteopedia.org/index.php?title=User:Frieda_Reichsman/PALM&diff=972153User:Frieda Reichsman/PALM2009-06-17T19:37:30Z<p>Frieda Reichsman: </p>
<hr />
<div>== Presentation: The Science of Atoms & Molecules Project: Guided Inquiry with The Molecular Workbench ==<br />
<br />
<big> Web sites</big><br />
*[http://concord.org The Concord Consortium]<br />
*[http://moleculesinmotion.com Molecules in Motion]<br />
*[http://www3.interscience.wiley.com:8100/legacy/college/boyer/0471661791/structure/protein_dna/protein_dna.htm Protein-DNA Interactions]<br />
*[http://sam.concord.org/ The Science of Atoms and Molecules Project]<br />
<br />
<br />
<big> Molecular Workbench </big><br />
*[http://mw2.concord.org/tmp.jnlp?address=http://mw2.concord.org/public/index.cml The Molecular Workbench Home Page]<br />
SAM Activities:<br />
*[http://mw2.concord.org/tmp.jnlp?address=http://mw2.concord.org/public/part2/proteinfolding/index.cml Four Levels of Protein Structure] SAM Activity<br />
*[http://mw2.concord.org/tmp.jnlp?address=http://mw2.concord.org/public/part2/diffat/page2.cml Net Flow from Low to High] Simulation<br />
*[http://mw2.concord.org/tmp.jnlp?address=http://mw2.concord.org/public/part2/proteinfolding/page6.cml Protein Folding (2D)] Simulation<br />
*[http://mw2.concord.org/tmp.jnlp?address=http://mw2.concord.org/public/part2/proteinfolding/page9.cml Secondary Structure Stabilization] Embedded Jmol<br />
* [http://mw2.concord.org/tmp.jnlp?address=http://mw2.concord.org/public/part1/index.cml Science of Atoms and Molecules (SAM) Activity Center]<br />
<br />
Rover Activity:<br />
*[http://mw2.concord.org/tmp.jnlp?address=http://mw2.concord.org/public/part2/missimmu/index.cml Mission Immunity (Molecular Rover)]<br />
<br />
Teaching with Molecular Workbench:<br />
*[http://molecularmodelingbasics.blogspot.com/2009/06/do-i-have-to-draw-you-phase-diagram.html Jan Jensen (Univ. of Copenhagen) 2 min screencast on phase change]<br />
*[http://mw2.concord.org/tmp.jnlp?address=http://mw2.concord.org/public/student/gaslaws/cool.cml Neocles Leontis (Bowling Green State Univ.) student models - gas law example]<br />
<br />
SAM is only a small part of MW. A good place to find '''other MW activities''' is [http://workbench.concord.org/database workbench.concord.org/database].<br />
<br />
'''Questions?''' Contact me at freichsman at concord dot org!<br />
<br />
{| class="wikitable" align="left"<br />
|-<br />
| <big>Problems Running Molecular Workbench?</big><br />
* Make sure Java is installed: [http://java.com Download/Update].<br />
* Still not working?<!-- [http://molo.concord.org/software/overviewAndInstallation.htm#installCore More Help] / --> [http://mw.concord.org/modeler/faq.html FAQ].<br />
* Firewall problems? You can [http://mw.concord.org/modeler/faq.html#cdmode run MW offline].<br />
|}</div>Frieda Reichsmanhttps://proteopedia.org/index.php?title=User:Frieda_Reichsman/PALM&diff=972152User:Frieda Reichsman/PALM2009-06-17T19:34:34Z<p>Frieda Reichsman: </p>
<hr />
<div>== Presentation: The Science of Atoms & Molecules Project: Guided Inquiry with The Molecular Workbench ==<br />
<br />
<big> Web sites</big><br />
*[http://concord.org The Concord Consortium]<br />
*[http://moleculesinmotion.com Molecules in Motion]<br />
*[http://www3.interscience.wiley.com:8100/legacy/college/boyer/0471661791/structure/protein_dna/protein_dna.htm Protein-DNA Interactions]<br />
*[http://sam.concord.org/ The Science of Atoms and Molecules Project]<br />
<br />
<br />
<big> Molecular Workbench </big><br />
*[http://mw2.concord.org/tmp.jnlp?address=http://mw2.concord.org/public/index.cml The Molecular Workbench Home Page]<br />
SAM Activities:<br />
*[http://mw2.concord.org/tmp.jnlp?address=http://mw2.concord.org/public/part2/proteinfolding/index.cml Four Levels of Protein Structure] SAM Activity<br />
*[http://mw2.concord.org/tmp.jnlp?address=http://mw2.concord.org/public/part2/diffat/page2.cml Net Flow from Low to High] Simulation<br />
*[http://mw2.concord.org/tmp.jnlp?address=http://mw2.concord.org/public/part2/proteinfolding/page6.cml Protein Folding (2D)] Simulation<br />
*[http://mw2.concord.org/tmp.jnlp?address=http://mw2.concord.org/public/part2/proteinfolding/page9.cml Secondary Structure Stabilization] Embedded Jmol<br />
* [http://mw2.concord.org/tmp.jnlp?address=http://mw2.concord.org/public/part1/index.cml Science of Atoms and Molecules (SAM) Activity Center]<br />
<br />
Rover Activity:<br />
*[http://mw2.concord.org/tmp.jnlp?address=http://mw2.concord.org/public/part2/missimmu/index.cml Mission Immunity (Molecular Rover)]<br />
<br />
Teaching with Molecular Workbench:<br />
[http://molecularmodelingbasics.blogspot.com/2009/06/do-i-have-to-draw-you-phase-diagram.html Jan Jensen (Univ. of Copenhagen) 2 min screencast on phase change]<br />
<br />
SAM is only a small part of MW. A good place to find '''other MW activities''' is [http://workbench.concord.org/database workbench.concord.org/database].<br />
<br />
'''Questions?''' Contact me at freichsman at concord dot org!<br />
<br />
{| class="wikitable" align="left"<br />
|-<br />
| <big>Problems Running Molecular Workbench?</big><br />
* Make sure Java is installed: [http://java.com Download/Update].<br />
* Still not working?<!-- [http://molo.concord.org/software/overviewAndInstallation.htm#installCore More Help] / --> [http://mw.concord.org/modeler/faq.html FAQ].<br />
* Firewall problems? You can [http://mw.concord.org/modeler/faq.html#cdmode run MW offline].<br />
|}</div>Frieda Reichsmanhttps://proteopedia.org/index.php?title=User:Frieda_Reichsman&diff=971990User:Frieda Reichsman2009-06-17T17:10:58Z<p>Frieda Reichsman: </p>
<hr />
<div><big> [[User:Frieda S. Reichsman/PALM|PALM Workshop page]]<br />
</big><br />
<br />
<br />
[http://moleculesinmotion.com MoleculesInMotion.Com]<br />
<br />
<!-- links to pages within Proteopedia: [[page name|link label]]<br />
links to external url's: [http://... link label]<br />
<br />
Click the "3D" button above the wikitext box to insert a Jmol<br />
--><br />
<applet load='2fsr' size='300' frame='true' align='right' caption='Insert caption here' /><br />
<br />
*<scene name='User:Frieda_S._Reichsman/2rh1/1'>Scene 1 for MW</scene><br />
*<scene name='User:Frieda_S._Reichsman/2rh1/2'>Scene 2 for MW</scene></div>Frieda Reichsmanhttps://proteopedia.org/index.php?title=User:Frieda_Reichsman&diff=971927User:Frieda Reichsman2009-06-17T12:32:10Z<p>Frieda Reichsman: </p>
<hr />
<div>[[User:Frieda S. Reichsman/PALM]] cf. [[User:Frieda S. Reichsman/PALM|PALM page]]<br />
<br />
<big><br />
[http://moleculesinmotion.com MoleculesInMotion.Com]<br />
</big><br />
<br />
<!-- links to pages within Proteopedia: [[page name|link label]]<br />
links to external url's: [http://... link label]<br />
<br />
Click the "3D" button above the wikitext box to insert a Jmol<br />
--><br />
<applet load='2fsr' size='300' frame='true' align='right' caption='Insert caption here' /><br />
<br />
*<scene name='User:Frieda_S._Reichsman/2rh1/1'>Scene 1 for MW</scene><br />
*<scene name='User:Frieda_S._Reichsman/2rh1/2'>Scene 2 for MW</scene></div>Frieda Reichsmanhttps://proteopedia.org/index.php?title=User:Frieda_Reichsman/PALM&diff=970260User:Frieda Reichsman/PALM2009-06-17T04:55:03Z<p>Frieda Reichsman: </p>
<hr />
<div>== Presentation: The Science of Atoms & Molecules Project: Guided Inquiry with The Molecular Workbench ==<br />
<br />
<big> Web sites</big><br />
*[http://concord.org The Concord Consortium]<br />
*[http://moleculesinmotion.com Molecules in Motion]<br />
*[http://www3.interscience.wiley.com:8100/legacy/college/boyer/0471661791/structure/protein_dna/protein_dna.htm Protein-DNA Interactions]<br />
*[http://sam.concord.org/ The Science of Atoms and Molecules Project]<br />
<br />
<br />
<big> Molecular Workbench </big><br />
*[http://mw2.concord.org/tmp.jnlp?address=http://mw2.concord.org/public/index.cml The Molecular Workbench Home Page]<br />
SAM Activities:<br />
*[http://mw2.concord.org/tmp.jnlp?address=http://mw2.concord.org/public/part2/proteinfolding/index.cml Four Levels of Protein Structure] SAM Activity<br />
*[http://mw2.concord.org/tmp.jnlp?address=http://mw2.concord.org/public/part2/diffat/page2.cml Net Flow from Low to High] Simulation<br />
*[http://mw2.concord.org/tmp.jnlp?address=http://mw2.concord.org/public/part2/proteinfolding/page6.cml Protein Folding (2D)] Simulation<br />
*[http://mw2.concord.org/tmp.jnlp?address=http://mw2.concord.org/public/part2/proteinfolding/page9.cml Secondary Structure Stabilization] Embedded Jmol<br />
* [http://mw2.concord.org/tmp.jnlp?address=http://mw2.concord.org/public/part1/index.cml Science of Atoms and Molecules (SAM) Activity Center]<br />
<br />
Rover Activity:<br />
*[http://mw2.concord.org/tmp.jnlp?address=http://mw2.concord.org/public/part2/missimmu/index.cml Mission Immunity (Molecular Rover)]<br />
<br />
SAM is only a small part of MW. A good place to find '''other MW activities''' is [http://workbench.concord.org/database workbench.concord.org/database].<br />
<br />
'''Questions?''' Contact me at freichsman at concord dot org!<br />
<br />
{| class="wikitable" align="left"<br />
|-<br />
| <big>Problems Running Molecular Workbench?</big><br />
* Make sure Java is installed: [http://java.com Download/Update].<br />
* Still not working?<!-- [http://molo.concord.org/software/overviewAndInstallation.htm#installCore More Help] / --> [http://mw.concord.org/modeler/faq.html FAQ].<br />
* Firewall problems? You can [http://mw.concord.org/modeler/faq.html#cdmode run MW offline].<br />
|}</div>Frieda Reichsmanhttps://proteopedia.org/index.php?title=User:Frieda_Reichsman/PALM&diff=970259User:Frieda Reichsman/PALM2009-06-17T04:52:33Z<p>Frieda Reichsman: </p>
<hr />
<div>== Presentation: The Science of Atoms & Molecules Project: Guided Inquiry with The Molecular Workbench ==<br />
<br />
<big> Web sites</big><br />
*[http://concord.org The Concord Consortium]<br />
*[http://moleculesinmotion.com Molecules in Motion]<br />
*[http://www3.interscience.wiley.com:8100/legacy/college/boyer/0471661791/structure/protein_dna/protein_dna.htm Protein-DNA Interactions]<br />
*[http://sam.concord.org/ The Science of Atoms and Molecules Project]<br />
<br />
<br />
<big> Molecular Workbench </big><br />
*[http://mw2.concord.org/tmp.jnlp?address=http://mw2.concord.org/public/index.cml The Molecular Workbench Home Page]<br />
SAM Activities:<br />
*[http://mw2.concord.org/tmp.jnlp?address=http://mw2.concord.org/public/part2/proteinfolding/index.cml Four Levels of Protein Structure] SAM Activity<br />
*[http://mw2.concord.org/tmp.jnlp?address=http://mw2.concord.org/public/part2/diffat/page2.cml Net Flow from Low to High] Simulation<br />
*[http://mw2.concord.org/tmp.jnlp?address=http://mw2.concord.org/public/part2/proteinfolding/page6.cml Protein Folding (2D)] Simulation<br />
*[http://mw2.concord.org/tmp.jnlp?address=http://mw2.concord.org/public/part2/proteinfolding/page9.cml Secondary Structure Stabilization] Embedded Jmol<br />
* [http://mw2.concord.org/tmp.jnlp?address=http://mw2.concord.org/public/part1/index.cml Science of Atoms and Molecules (SAM) Activity Center]<br />
<br />
Rover Activity:<br />
*[http://mw2.concord.org/tmp.jnlp?address=http://mw2.concord.org/public/part2/missimmu/index.cml Mission Immunity (Molecular Rover)]<br />
<br />
SAM is only a small part of MW. A good place to find '''other MW activities''' is [http://workbench.concord.org/database workbench.concord.org/database].<br />
<br />
{| class="wikitable" align="left"<br />
|-<br />
| <big>Problems Running Molecular Workbench?</big><br />
* Make sure Java is installed: [http://java.com Download/Update].<br />
* Still not working?<!-- [http://molo.concord.org/software/overviewAndInstallation.htm#installCore More Help] / --> [http://mw.concord.org/modeler/faq.html FAQ].<br />
* Firewall problems? You can [http://mw.concord.org/modeler/faq.html#cdmode run MW offline].<br />
|}</div>Frieda Reichsman