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		<id>https://proteopedia.org/index.php?title=User:Marvin_O%27Neal/OspA&amp;diff=1388269</id>
		<title>User:Marvin O&#039;Neal/OspA</title>
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		<updated>2012-05-04T21:08:54Z</updated>

		<summary type="html">&lt;p&gt;Jenny Kim Kim: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;Structure load=&amp;quot;1fj1&amp;quot; size=&amp;quot;350&amp;quot; frame=&amp;quot;true&amp;quot; align=&amp;quot;right&amp;quot; name=&amp;quot;OspA-secondary&amp;quot; caption=&amp;quot;Outer surface protein A (OspA) ([[1fj1|1FJ1]], chain F) showing secondary structures.&amp;quot; scene=&amp;quot;Studio:G2SecL03/Ospa_default/5&amp;quot;/&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
&amp;lt;b&amp;gt;Outer Surface Protein A (OspA)&amp;lt;/b&amp;gt; is a major lipoprotein found on the surface of [http://en.wikipedia.org/wiki/Spirochaete spirochetes] from the genus [http://en.wikipedia.org/wiki/Borrelia &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt;] and is comprised of 21 anti-parallel β-sheets and a single α-helix. OspA&#039;s expression is regulated at different points in time, from being downregulated during the tick&#039;s feeding process on its host to being upregulated in the host&#039;s cerebrospinal fluid (CSF) to induce inflammatory response, resulting in acute Lyme [http://en.wikipedia.org/wiki/Neuroborreliosis neuroborreliosis]. OspA has also been used as a vector in working towards the development of a vaccine for [http://en.wikipedia.org/wiki/Lyme_disease Lyme disease].&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;Introduction&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Lyme disease is caused by the spirochete &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; and spread via hard-bodied ticks belonging to the family [http://en.wikipedia.org/wiki/Ixodidae &amp;lt;i&amp;gt;Ixodidae&amp;lt;/i&amp;gt;]. The &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; spirochetes are motile, helical organisms have several lipoproteins exposed on the surfaces of their membranes that invoke a response from host immune systems. The predominant group of these is classified as the outer surface proteins (Osps). Both the pathogenesis of Lyme disease as well as the host&#039;s immune response stem from the effects of the spirochete&#039;s presence and involvement in the system.&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
The major strain of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; in the United States is [http://en.wikipedia.org/wiki/Borrelia_burgdorferi &amp;lt;i&amp;gt;Borrelia burgdorferi&amp;lt;/i&amp;gt;] &amp;lt;i&amp;gt;sensu stricto (Bb.)&amp;lt;/i&amp;gt;, with 20-100 cases of Lyme disease being reported per 100,000 people. In Europe, Lyme disease cases are more prevalent, with 100-130 diagnoses per 100,000 people, but are caused by the spirochetes [http://en.wikipedia.org/wiki/Borrelia_afzelii &amp;lt;i&amp;gt;Borrelia afzelii (Ba.)&amp;lt;/i&amp;gt;] and [http://en.wikipedia.org/wiki/Borrelia_garinii &amp;lt;i&amp;gt;Borrelia garinii (Bg.)&amp;lt;/i&amp;gt;] in addition to &amp;lt;i&amp;gt;B. burgdorferi&amp;lt;/i&amp;gt;.&amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;ding&amp;quot;&amp;gt;PMID: 11183781&amp;lt;/ref&amp;gt; &lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Lyme disease is a debilitating condition that begins with a characteristic bullseye rash known as an [http://en.wikipedia.org/wiki/Erythema_chronicum_migrans erythema migrans (EM)] as well as the development of lesions on other parts of the body, not just at the site of the tick&#039;s attachment to its host. Secondary stage symptoms include affecting the heart, joints, and both the central and peripheral nervous systems.  OspA is used in adhering to the tick&#039;s gut by binding with the tick receptor for OspA (TROSPA), a receptor necessary for the colonization of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; inside the tick. High levels of both OspA and TROSPA are found prior to feeding, but are downregulated once the feeding process begins in order to initiate transmission into the host.&amp;lt;ref name=&amp;quot;pal&amp;quot;&amp;gt;PMID: 15537536&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
While feeding, OspA is downregulated in order to evade an immune response from the incoming host blood into the gut, releasing the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; from the gut wall and migrating into the tick&#039;s salivary glands, thereby allowing it to enter the host through the bite. This is evidenced by the fact that patients with Lyme disease have been found to not possess OspA antibodies in the early stages of the disease.&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt; OspA is the protein most related to acute Lyme neuroborreliosis (LNB), the neurological manifestations of Lyme disease.  &lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;OspA&#039;s Role in Invasion&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Once inside the host, the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; has a great number of mechanisms available to actively suppress the host&#039;s immune system response and neutralize its effector mechanisms, such as the expression of another outer surface protein, OspC, which prevents susceptibility to the host&#039;s [http://en.wikipedia.org/wiki/Innate_immune_system innate immunity] and [http://en.wikipedia.org/wiki/Complement_system complement systems]. Additionally, &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; is capable of suppressing many of its surface proteins to reduce its detectability, but can also utilize protective means by temporarily expressing them when needed.&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h3&amp;gt;Acute Lyme Neuroborreliosis (LNB)&amp;lt;/h3&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Acute Lyme Neuroborreliosis (LNB) is part of the second stage of Lyme disease in which the spirochete invades the peripheral and central nervous systems (CNS). Symptoms of LNB include: meningoradiculitis with inflammation of the nerve roots and [http://en.wikipedia.org/wiki/Radicular_pain radiculitis] (Bannwarth’s syndrome), lymphocytic meningitis, and cranial and [http://www.ncbi.nlm.nih.gov/pubmedhealth/PMH0001619/ peripheral neuritis]. In Europe, the strain predominantly found in the CSF of patients with Bannwarth&#039;s syndrome is &amp;lt;i&amp;gt;B. garinii&amp;lt;/i&amp;gt;. However, in the United States, Bannwarth&#039;s syndrome is rare and the most common manifestations of Lyme neuroborreliosis is [http://en.wikipedia.org/wiki/Meningitis meningitis], caused by &amp;lt;i&amp;gt;B. burgdorferi&amp;lt;/i&amp;gt;. The presence of OspA in the cerebrospinal fluid (CSF) is responsible for this complex inflammatory response in the brain that leads to the neuroborreliosis.&amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h3&amp;gt;Evasion and the Extracellular Matrix&amp;lt;/h3&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
The &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; are able to hide in the [http://en.wikipedia.org/wiki/Extracellular_matrix extracellular matrix], allowing it to survive by avoiding [http://en.wikipedia.org/wiki/Leukocytes leukocytes] circulating in the bloodstream. OspA can rapidly bind to plasminogen, which becomes [http://en.wikipedia.org/wiki/Plasmin plasmin] once activated, and degrades the extracellular matrix. By binding to plasminogen, &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; could be exploiting its function and utilizing it to invade the extracellular matrix. However, due to the fact that OspA is downregulated during feeding, and stays unexpressed, a different mechanism may be used instead. Additionally, &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; induces the local upregulation of matrix metalloproteinase-9, causing the digestion of the surrounding extracellular matrix. &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; can also bind to several proteins in the extracellular matrix, such as [http://en.wikipedia.org/wiki/Fibronectin fibronectin], [http://en.wikipedia.org/wiki/Integrins integrins] or [http://en.wikipedia.org/wiki/Decorin decorin], which can aid in the spread and survival of the spirochetes in these tissues.&amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h3&amp;gt;Migration Across the Blood-Brain Barrier&amp;lt;/h3&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
It is not fully understood how &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; get past the [http://en.wikipedia.org/wiki/Blood-brain_barrier blood-brain barrier], though some researchers suggest a paracellular route, which involves a process using transient tether-type associations, short-term dragging interactions, and stationary adhesion. There is evidence that &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; utilizes OspA in the transient tethering stage. The blood-brain barrier is composed of brain microvascular endothelial cells, astrocytes, a basement membrane, pericytes, and neurons. OspA is a major adherent molecule to brain microvascular cells by binding to the [[1aly|CD40]] receptors outside, which results in events that are typically seen when leukocytes cross the blood brain barrier. &lt;br /&gt;
&lt;br /&gt;
Activation of CD40 receptors leads to the production of proinflammatory cytokines and enhanced expression of ICAM-1, E-selectin and VCAM-1, resulting in increased cell binding, and the formation of fenestrations due to increased vascular endothelial growth factor, and vascular permeability factor. OspA might be mimicking leukocytes in order to cross the blood-brain barrier.  However not all strains of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; can utilize OspA to do this, OspA only contributes about 70% to adherence, and  other &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; proteins are also needed in this process. It has also been seen that OspA mediates the adhesion of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; to murine neural and glial cell lines. &amp;lt;ref name=&amp;quot;pulzova&amp;quot;&amp;gt;PMID: 22355605&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h3&amp;gt;Role in Inflammation&amp;lt;/h3&amp;gt;&lt;br /&gt;
&lt;br /&gt;
[[Image:G2L03-OspA-mechanism.jpg|thumb|300px|Mechanism of the host inflammatory response to OspA]]&lt;br /&gt;
&lt;br /&gt;
There are six steps involved in the host&#039;s inflammatory response to OspA: &amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt;&amp;lt;br&amp;gt;&lt;br /&gt;
&amp;lt;ol&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;When the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; enter the host’s CNS they encounter several different types of immune cells such as [http://en.wikipedia.org/wiki/Monocyte monocytes], [http://en.wikipedia.org/wiki/Macrophages macrophages], and [http://en.wikipedia.org/wiki/Dendritic_cells dendritic cells]. While in the CSF, outer surface protein A (OspA) is upregulated and it’s increased expression promotes recognition by a specific receptor on a monocyte.&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;The OspA-bound monocyte then releases proinflammatory [http://en.wikipedia.org/wiki/Cytokine cytokines] (i.e. [http://en.wikipedia.org/wiki/Interferon interferon]), as well as [http://en.wikipedia.org/wiki/Chemokine chemokines], such as [http://en.wikipedia.org/wiki/CXCL13 CXCL13]. In patients with LNB, there is an observed increase in the levels of these cytokines and chemokines in their CSF. The production of chemokines leads to the recruitment of other immune cells to the site of infection.&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://en.wikipedia.org/wiki/B_lymphocyte B-lymphocytes] respond to the new concentration gradient of CXCL13 between the blood and CSF and migrate into the CSF.&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;B-lymphocytes undergo [http://en.wikipedia.org/wiki/Receptor-mediated_endocytosis receptor-mediated endocytosis], consuming the OspA antigens present in the CSF, thereby triggering its activation. The B-lymphocytes then are able to differentiate and mature into  [http://en.wikipedia.org/wiki/Plasma_cells plasma cells].&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;The plasma cells create large quantities of anti-OspA antibodies specific to this strain of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; and release them into the CSF.&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;The anti-OspA antibodies will then bind to the OspA on the spirochete’s membrane, thus killing the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt;.&amp;lt;/li&amp;gt;&lt;br /&gt;
&amp;lt;/ol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
This process is two-sided in the sense that the OspA aids in the pathogenesis of new symptoms (neuroborreliosis) through the chemokine’s actions, as well as initiating the signaling cascade to destroy itself.&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;OspA Vaccination&amp;lt;/h2&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;Structure load=&amp;quot;1fj1&amp;quot; size=&amp;quot;350&amp;quot; frame=&amp;quot;true&amp;quot; align=&amp;quot;right&amp;quot; name=&amp;quot;complex&amp;quot; caption=&amp;quot;Outer surface protein A (OspA) in complex with the LA-2 Fab antibody ([[1fj1|1FJ1]]).&amp;quot; scene=&amp;quot;Studio:G2SecL03/Ospafab-orig/3&amp;quot;/&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Risk of developing Lyme disease can be mitigated by staying clear of areas with populations of ticks, wearing proper attire to minimize easily bitten areas of the body, and using insect repellents containing [http://en.wikipedia.org/wiki/DEET DEET] (N,N-diethy-m-toluamide). However, another effective means for prevention could be possible by using an outer surface protein from &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; in the creation of a vaccine.&amp;lt;ref name=&amp;quot;nigrovic&amp;quot;&amp;gt;PMID: 16893489&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
The membrane composition of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; is abundant in both OspA and OspB, and the two proteins share a 53% similarity in their primary sequences. Both OspA and OspB are expressed in the tick&#039;s gut and downregulated during feeding and aid in its survivability; however, OspA is overall less varied and reactive than OspB, which has greater variability.&amp;lt;ref name=&amp;quot;becker&amp;quot;&amp;gt;PMID: 15713683&amp;lt;/ref&amp;gt; The relatively conserved sequence of OspA thus lends itself better to study and application toward the development of a vaccine for a broader range of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; strains in the treatment of Lyme disease than that of OspB. The first vaccine used a purified recombinant form of OspA and functioned in blocking transmission of the spirochetes expressing OspA from tick to host during feeding, killing them while still attached to the tick&#039;s gut.&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;battisti&amp;quot;&amp;gt;PMID: 18779341&amp;lt;/ref&amp;gt; The vaccine, Lymerix, had shown 76% and 92% effectiveness in separate clinical trials in which patients were treated for two years following a three-dose schedule. However, the vaccination was suspended from use in 2002 when opponents claimed the [http://en.wikipedia.org/wiki/Immunoglobulin_G IgG antibodies] for OspA were associated with the onset of severe chronic arthritis, as well as other side effects affecting immunity.&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;plotkin&amp;quot;&amp;gt;PMID: 21217175&amp;lt;/ref&amp;gt;  This fact, in conjunction with the desire for a more widespread vaccine treating multiple strains of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt;, has spurred research towards a new vaccine.&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
To address the concerns of vaccine with broader protection, creation of a chimera, mixing the OspA of different strains of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; would be ideal. Study of the epitope of &amp;lt;scene name=&#039;Studio:G2SecL03/Ospafab-ospa/3&#039; target=&amp;quot;complex&amp;quot;&amp;gt;OspA&amp;lt;/scene&amp;gt; and its &amp;lt;scene name=&#039;Studio:G2SecL03/Ospafab-interaction/3&#039; target=&amp;quot;complex&amp;quot;&amp;gt;interactions&amp;lt;/scene&amp;gt; with the murine monoclonal antibody &amp;lt;scene name=&#039;Studio:G2SecL03/Ospafab-fab/3&#039; target=&amp;quot;complex&amp;quot;&amp;gt;LA-2&amp;lt;/scene&amp;gt; have proved useful in determining effectiveness of a given vaccine trial as high levels of antibodies in test sera compete against LA-2 for binding with OspA. LA-2 makes direct contact with three exposed loops of the C-terminus of OspA. The recognition of OspA by LA-2 requires an induced fit mechanism where these three loops undergo conformational changes to optimize their interaction in the complex. &amp;lt;ref name=&amp;quot;ding&amp;quot;&amp;gt;PMID: 11183781&amp;lt;/ref&amp;gt; &lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h3&amp;gt;Scene List for the OspA:LA-2 Complex&amp;lt;/h3&amp;gt;&lt;br /&gt;
&amp;lt;ul&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospafab-orig/3&#039; target=&amp;quot;complex&amp;quot;&amp;gt;Reset model&amp;lt;/scene&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospafab-fab/3&#039; target=&amp;quot;complex&amp;quot;&amp;gt;LA-2&amp;lt;/scene&amp;gt; Fab antibody (Bluish regions indicate heavy chains (chains B &amp;amp; D of 1FJ1) and greenish regions indicate light chains (chains A &amp;amp; C of 1FJ1))&amp;lt;/li&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospafab-ospa/3&#039; target=&amp;quot;complex&amp;quot;&amp;gt;OspA&amp;lt;/scene&amp;gt; proteins in complex with the LA-2 Fab antibody (chains E &amp;amp; F of 1FJ1)&amp;lt;/li&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospafab-interaction/3&#039; target=&amp;quot;complex&amp;quot;&amp;gt;Closeup&amp;lt;/scene&amp;gt; of the OspA antigen : LA-2 Fab antibody interactions&amp;lt;/li&amp;gt;&lt;br /&gt;
&amp;lt;/ul&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;Structure of OspA&amp;lt;/h2&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;Structure load=&amp;quot;1fj1&amp;quot; size=&amp;quot;350&amp;quot; frame=&amp;quot;true&amp;quot; align=&amp;quot;right&amp;quot; name=&amp;quot;OspA-manip&amp;quot; caption=&amp;quot;Outer surface protein A (OspA) ([[1fj1|1FJ1]], chain F)&amp;quot; scene=&amp;quot;Studio:G2SecL03/Ospa_3loopscartoon/3&amp;quot;/&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
OspA is made up of 273 residues over 21 anti-parallel β-sheets and a single α-helix. It&#039;s folded conformation is divided into three main sections: a N-terminus &amp;quot;sandwich,&amp;quot; a central region comprising of several β-sheets and a C-terminus &amp;quot;barrel&amp;quot; domain.&amp;lt;ref name=&amp;quot;ding&amp;quot;&amp;gt;PMID: 11183781&amp;lt;/ref&amp;gt; The folded regions at its ends are connected by a single β-sheet layer in the middle, giving the protein the unique shape of a dumbell.&amp;lt;ref name=&amp;quot;makabe&amp;quot;&amp;gt;PMID: 16823038&amp;lt;/ref&amp;gt; &lt;br /&gt;
&lt;br /&gt;
There are &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops/4&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;three loops&amp;lt;/scene&amp;gt; at the C-terminus of OspA that are important in binding with the LA-2 Fab antibody, whose interactions provide great insight into vaccine research and effectiveness. These three loops are linearly arranged and form protruding ridge at the C-terminus of OspA. Within these loops, there are &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-nor/3&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;three residues&amp;lt;/scene&amp;gt; &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-r/2&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;(show residue R-groups)&amp;lt;/scene&amp;gt; where there are distinct variations between the different strains of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; and serve as potential targets for the creation of a broader vaccine.&amp;lt;ref name=&amp;quot;ding&amp;quot;&amp;gt;PMID: 11183781&amp;lt;/ref&amp;gt; &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops3res/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;(display both the three loops and three residues together)&amp;lt;/scene&amp;gt; &lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-loop1/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Loop 1&amp;lt;/scene&amp;gt;, (residues 203-220), is important in showing variation amongst the different strains of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; as well as being optimally conformed for binding without steric hindrance. &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-loop2/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Loop 2&amp;lt;/scene&amp;gt; (residues 224-233) and &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-loop3/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Loop 3&amp;lt;/scene&amp;gt; (residues 246-257) are more strongly conserved than Loop 1 but also help to show some variation amongst strains. The LA-2 Fab antibody readily recognizes OspA from &amp;lt;i&amp;gt;B. burgdorferi&amp;lt;/i&amp;gt;, but does not recognize that from &amp;lt;i&amp;gt;B. afzelii&amp;lt;/i&amp;gt; or &amp;lt;i&amp;gt;B. garinii&amp;lt;/i&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
Between &amp;lt;i&amp;gt;B. burgdorferi&amp;lt;/i&amp;gt; and &amp;lt;i&amp;gt;B. afzelii&amp;lt;/i&amp;gt; genetic sequences are generally invariant, but two residues change between the species: &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-ala208/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Alanine (Ala) 208&amp;lt;/scene&amp;gt; in &amp;lt;i&amp;gt;B. burgdorferi&amp;lt;/i&amp;gt; is a Glutamine (Gln) in &amp;lt;i&amp;gt;B. afzelii&amp;lt;/i&amp;gt;, and &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-asn251/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Asparagine (Asn) 251&amp;lt;/scene&amp;gt; in &amp;lt;i&amp;gt;B. burgdorferi&amp;lt;/i&amp;gt; is an Alanine (Ala) in &amp;lt;i&amp;gt;B. afzelii&amp;lt;/i&amp;gt;. &amp;lt;i&amp;gt;B. garinii&amp;lt;/i&amp;gt; has more variation and in addition to the previous two differences, having at least one more difference, where &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-ala215/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Alanine (Ala) 215&amp;lt;/scene&amp;gt; in &amp;lt;i&amp;gt;B. burgdorferi&amp;lt;/i&amp;gt; is a Lysine (Lys), and sometimes also has a deletion at &amp;lt;i&amp;gt;B. burgdorferi&amp;lt;/i&amp;gt;’s Alanine 208. LA-2 and OspA of &amp;lt;i&amp;gt;B. burgdorferi&amp;lt;/i&amp;gt; form a tight interface when binding, and the longer Glutamine (Gln) sidechain found in &amp;lt;i&amp;gt;B. afzelii&amp;lt;/i&amp;gt; and &amp;lt;i&amp;gt;B. garinii&amp;lt;/i&amp;gt; is more difficult to accommodate, causing less binding. A chimera that was weakly recognized by LA-2 was made with parts of loop 1 from &amp;lt;i&amp;gt;B. burgdorferi&amp;lt;/i&amp;gt;, and loops 2 and 3 from &amp;lt;i&amp;gt;B. garinii&amp;lt;/i&amp;gt;.&amp;lt;ref name=&amp;quot;ding&amp;quot;&amp;gt;PMID: 11183781&amp;lt;/ref&amp;gt; Recently, a different kind of chimera has been made which combined the proximal region of &amp;lt;i&amp;gt;B. burgdorferi&amp;lt;/i&amp;gt; and distal region of &amp;lt;i&amp;gt;B. afzelii&amp;lt;/i&amp;gt;, and was able to successfully protect mice from both species.&amp;lt;ref name=&amp;quot;livey&amp;quot;&amp;gt;PMID: 21217174&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h3&amp;gt;Scene List for OspA&amp;lt;/h3&amp;gt;&lt;br /&gt;
&amp;lt;ul&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa_3loopscartoon/3&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Reset model&amp;lt;/scene&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops/4&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Three loops&amp;lt;/scene&amp;gt; in C-terminus (close up)&lt;br /&gt;
         &amp;lt;ul&amp;gt;&lt;br /&gt;
           &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-loop1/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Loop 1&amp;lt;/scene&amp;gt; (residues 203-220)&amp;lt;/li&amp;gt;&lt;br /&gt;
           &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-loop2/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Loop 2&amp;lt;/scene&amp;gt; (residues 224-233)&amp;lt;/li&amp;gt;&lt;br /&gt;
           &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-loop3/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Loop 3&amp;lt;/scene&amp;gt; (residues 246-257)&amp;lt;/li&amp;gt;&lt;br /&gt;
         &amp;lt;/ul&amp;gt;&lt;br /&gt;
     &amp;lt;/li&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-nor/3&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Three residues&amp;lt;/scene&amp;gt; in C-terminus (Ala208, Ala215 and Asn251 in &amp;lt;i&amp;gt;B. burgdorferi&amp;lt;/i&amp;gt;; also hides R-groups)&lt;br /&gt;
         &amp;lt;ul&amp;gt;&lt;br /&gt;
           &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-r/2&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Display R-groups&amp;lt;/scene&amp;gt; of Ala208, Ala215 and Asn251&amp;lt;/li&amp;gt;&lt;br /&gt;
           &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-ala208/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Alanine (Ala) 208&amp;lt;/scene&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
           &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-ala215/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Alanine (Ala) 215&amp;lt;/scene&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
           &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-asn251/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Asparagine (Asn) 251&amp;lt;/scene&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
         &amp;lt;/ul&amp;gt;&lt;br /&gt;
     &amp;lt;/li&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops3res/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Three loops and all three residues (with R-groups included)&amp;lt;/scene&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
&amp;lt;/ul&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;References&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;references /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;External Links&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;ul&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://www.who.int/ith/diseases/lyme/en/index.html World Health Organization: Lyme Disease]&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://www.ncbi.nlm.nih.gov/pubmedhealth/PMH0002296/ PubMed Health: Lyme Disease]&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://www.aldf.com/ American Lyme Disease Foundation]&lt;br /&gt;
&amp;lt;/ul&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;Proteopedia Page Contributors and Editors&amp;lt;/h2&amp;gt;&lt;br /&gt;
[http://proteopedia.org/wiki/index.php/User:Kimberly_Slade Kimberly Slade], [http://proteopedia.org/wiki/index.php/User:Cara_Lin Cara Lin], [http://proteopedia.org/wiki/index.php/User:Andrea_Mullen Andrea Mullen], [http://proteopedia.org/wiki/index.php/User:Jenny_Kim_Kim Jenny Kim Kim]&lt;br /&gt;
&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&lt;/div&gt;</summary>
		<author><name>Jenny Kim Kim</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=User:Marvin_O%27Neal/OspA&amp;diff=1388268</id>
		<title>User:Marvin O&#039;Neal/OspA</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=User:Marvin_O%27Neal/OspA&amp;diff=1388268"/>
		<updated>2012-05-04T21:05:06Z</updated>

		<summary type="html">&lt;p&gt;Jenny Kim Kim: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;Structure load=&amp;quot;1fj1&amp;quot; size=&amp;quot;350&amp;quot; frame=&amp;quot;true&amp;quot; align=&amp;quot;right&amp;quot; name=&amp;quot;OspA-secondary&amp;quot; caption=&amp;quot;Outer surface protein A (OspA) ([[1fj1|1FJ1]], chain F) showing secondary structures.&amp;quot; scene=&amp;quot;Studio:G2SecL03/Ospa_default/5&amp;quot;/&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
&amp;lt;b&amp;gt;Outer Surface Protein A (OspA)&amp;lt;/b&amp;gt; is a major lipoprotein found on the surface of [http://en.wikipedia.org/wiki/Spirochaete spirochetes] from the genus [http://en.wikipedia.org/wiki/Borrelia &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt;] and is comprised of 21 anti-parallel β-sheets and a single α-helix. OspA&#039;s expression is regulated at different points in time, from being downregulated during the tick&#039;s feeding process on its host to being upregulated in the host&#039;s cerebrospinal fluid (CSF) to induce inflammatory response, resulting in acute Lyme [http://en.wikipedia.org/wiki/Neuroborreliosis neuroborreliosis]. OspA has also been used as a vector in working towards the development of a vaccine for [http://en.wikipedia.org/wiki/Lyme_disease Lyme disease].&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;Introduction&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Lyme disease is caused by the spirochete &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; and spread via hard-bodied ticks belonging to the family [http://en.wikipedia.org/wiki/Ixodidae &amp;lt;i&amp;gt;Ixodidae&amp;lt;/i&amp;gt;]. The &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; spirochetes are motile, helical organisms have several lipoproteins exposed on the surfaces of their membranes that invoke a response from host immune systems. The predominant group of these is classified as the outer surface proteins (Osps). Both the pathogenesis of Lyme disease as well as the host&#039;s immune response stem from the effects of the spirochete&#039;s presence and involvement in the system.&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
The major strain of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; in the United States is [http://en.wikipedia.org/wiki/Borrelia_burgdorferi &amp;lt;i&amp;gt;Borrelia burgdorferi&amp;lt;/i&amp;gt;] &amp;lt;i&amp;gt;sensu stricto (Bb.)&amp;lt;/i&amp;gt;, with 20-100 cases of Lyme disease being reported per 100,000 people. In Europe, Lyme disease cases are more prevalent, with 100-130 diagnoses per 100,000 people, but are caused by the spirochetes [http://en.wikipedia.org/wiki/Borrelia_afzelii &amp;lt;i&amp;gt;Borrelia afzelii (Ba.)&amp;lt;/i&amp;gt;] and [http://en.wikipedia.org/wiki/Borrelia_garinii &amp;lt;i&amp;gt;Borrelia garinii (Bg.)&amp;lt;/i&amp;gt;] in addition to &amp;lt;i&amp;gt;B. burgdorferi&amp;lt;/i&amp;gt;.&amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;ding&amp;quot;&amp;gt;PMID: 11183781&amp;lt;/ref&amp;gt; &lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Lyme disease is a debilitating condition that begins with a characteristic bullseye rash known as an [http://en.wikipedia.org/wiki/Erythema_chronicum_migrans erythema migrans (EM)] as well as the development of lesions on other parts of the body, not just at the site of the tick&#039;s attachment to its host. Secondary stage symptoms include affecting the heart, joints, and both the central and peripheral nervous systems.  OspA is used in adhering to the tick&#039;s gut by binding with the tick receptor for OspA (TROSPA), a receptor necessary for the colonization of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; inside the tick. High levels of both OspA and TROSPA are found prior to feeding, but are downregulated once the feeding process begins in order to initiate transmission into the host.&amp;lt;ref name=&amp;quot;pal&amp;quot;&amp;gt;PMID: 15537536&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
While feeding, OspA is downregulated in order to evade an immune response from the incoming host blood into the gut, releasing the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; from the gut wall and migrating into the tick&#039;s salivary glands, thereby allowing it to enter the host through the bite. This is evidenced by the fact that patients with Lyme disease have been found to not possess OspA antibodies in the early stages of the disease.&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt; OspA is the protein most related to acute Lyme neuroborreliosis (LNB), the neurological manifestations of Lyme disease.  &lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;OspA&#039;s Role in Invasion&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Once inside the host, the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; has a great number of mechanisms available to actively suppress the host&#039;s immune system response and neutralize its effector mechanisms, such as the expression of another outer surface protein, OspC, which prevents susceptibility to the host&#039;s [http://en.wikipedia.org/wiki/Innate_immune_system innate immunity] and [http://en.wikipedia.org/wiki/Complement_system complement systems]. Additionally, &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; is capable of suppressing many of its surface proteins to reduce its detectability, but can also utilize protective means by temporarily expressing them when needed.&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h3&amp;gt;Acute Lyme Neuroborreliosis (LNB)&amp;lt;/h3&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Acute Lyme Neuroborreliosis (LNB) is part of the second stage of Lyme disease in which the spirochete invades the peripheral and central nervous systems (CNS). Symptoms of LNB include: meningoradiculitis with inflammation of the nerve roots and [http://en.wikipedia.org/wiki/Radicular_pain radiculitis] (Bannwarth’s syndrome), lymphocytic meningitis, and cranial and [http://www.ncbi.nlm.nih.gov/pubmedhealth/PMH0001619/ peripheral neuritis]. In Europe, the strain predominantly found in the CSF of patients with Bannwarth&#039;s syndrome is &amp;lt;i&amp;gt;B. garinii&amp;lt;/i&amp;gt;. However, in the United States, Bannwarth&#039;s syndrome is rare and the most common manifestations of Lyme neuroborreliosis is [http://en.wikipedia.org/wiki/Meningitis meningitis], caused by &amp;lt;i&amp;gt;B. burgdorferi&amp;lt;/i&amp;gt;. The presence of OspA in the cerebrospinal fluid (CSF) is responsible for this complex inflammatory response in the brain that leads to the neuroborreliosis.&amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h3&amp;gt;Evasion and the Extracellular Matrix&amp;lt;/h3&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
The &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; are able to hide in the [http://en.wikipedia.org/wiki/Extracellular_matrix extracellular matrix], allowing it to survive by avoiding [http://en.wikipedia.org/wiki/Leukocytes leukocytes] circulating in the bloodstream. OspA can rapidly bind to plasminogen, which becomes [http://en.wikipedia.org/wiki/Plasmin plasmin] once activated, and degrades the extracellular matrix. By binding to plasminogen, &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; could be exploiting its function and utilizing it to invade the extracellular matrix. However, due to the fact that OspA is downregulated during feeding, and stays unexpressed, a different mechanism may be used instead. Additionally, &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; induces the local upregulation of matrix metalloproteinase-9, causing the digestion of the surrounding extracellular matrix. &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; can also bind to several proteins in the extracellular matrix, such as [http://en.wikipedia.org/wiki/Fibronectin fibronectin], [http://en.wikipedia.org/wiki/Integrins integrins] or [http://en.wikipedia.org/wiki/Decorin decorin], which can aid in the spread and survival of the spirochetes in these tissues.&amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h3&amp;gt;Migration Across the Blood-Brain Barrier&amp;lt;/h3&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
It is not fully understood how &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; get past the [http://en.wikipedia.org/wiki/Blood-brain_barrier blood-brain barrier], though some researchers suggest a paracellular route, which involves a process using transient tether-type associations, short-term dragging interactions, and stationary adhesion. There is evidence that &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; utilizes OspA in the transient tethering stage. The blood-brain barrier is composed of brain microvascular endothelial cells, astrocytes, a basement membrane, pericytes, and neurons. OspA is a major adherent molecule to brain microvascular cells by binding to the CD40 receptors outside, which results in events that are typically seen when leukocytes cross the blood brain barrier. &lt;br /&gt;
&lt;br /&gt;
Activation of CD40 receptors leads to the production of proinflammatory cytokines and enhanced expression of ICAM-1, E-selectin and VCAM-1, resulting in increased cell binding, and the formation of fenestrations due to increased vascular endothelial growth factor, and vascular permeability factor. OspA might be mimicking leukocytes in order to cross the blood-brain barrier.  However not all strains of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; can utilize OspA to do this, OspA only contributes about 70% to adherence, and  other &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; proteins are also needed in this process. It has also been seen that OspA mediates the adhesion of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; to murine neural and glial cell lines. &amp;lt;ref name=&amp;quot;pulzova&amp;quot;&amp;gt;PMID: 22355605&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h3&amp;gt;Role in Inflammation&amp;lt;/h3&amp;gt;&lt;br /&gt;
&lt;br /&gt;
[[Image:G2L03-OspA-mechanism.jpg|thumb|300px|Mechanism of the host inflammatory response to OspA]]&lt;br /&gt;
&lt;br /&gt;
There are six steps involved in the host&#039;s inflammatory response to OspA: &amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt;&amp;lt;br&amp;gt;&lt;br /&gt;
&amp;lt;ol&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;When the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; enter the host’s CNS they encounter several different types of immune cells such as [http://en.wikipedia.org/wiki/Monocyte monocytes], [http://en.wikipedia.org/wiki/Macrophages macrophages], and [http://en.wikipedia.org/wiki/Dendritic_cells dendritic cells]. While in the CSF, outer surface protein A (OspA) is upregulated and it’s increased expression promotes recognition by a specific receptor on a monocyte.&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;The OspA-bound monocyte then releases proinflammatory [http://en.wikipedia.org/wiki/Cytokine cytokines] (i.e. [http://en.wikipedia.org/wiki/Interferon interferon]), as well as [http://en.wikipedia.org/wiki/Chemokine chemokines], such as [http://en.wikipedia.org/wiki/CXCL13 CXCL13]. In patients with LNB, there is an observed increase in the levels of these cytokines and chemokines in their CSF. The production of chemokines leads to the recruitment of other immune cells to the site of infection.&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://en.wikipedia.org/wiki/B_lymphocyte B-lymphocytes] respond to the new concentration gradient of CXCL13 between the blood and CSF and migrate into the CSF.&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;B-lymphocytes undergo [http://en.wikipedia.org/wiki/Receptor-mediated_endocytosis receptor-mediated endocytosis], consuming the OspA antigens present in the CSF, thereby triggering its activation. The B-lymphocytes then are able to differentiate and mature into  [http://en.wikipedia.org/wiki/Plasma_cells plasma cells].&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;The plasma cells create large quantities of anti-OspA antibodies specific to this strain of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; and release them into the CSF.&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;The anti-OspA antibodies will then bind to the OspA on the spirochete’s membrane, thus killing the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt;.&amp;lt;/li&amp;gt;&lt;br /&gt;
&amp;lt;/ol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
This process is two-sided in the sense that the OspA aids in the pathogenesis of new symptoms (neuroborreliosis) through the chemokine’s actions, as well as initiating the signaling cascade to destroy itself.&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;OspA Vaccination&amp;lt;/h2&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;Structure load=&amp;quot;1fj1&amp;quot; size=&amp;quot;350&amp;quot; frame=&amp;quot;true&amp;quot; align=&amp;quot;right&amp;quot; name=&amp;quot;complex&amp;quot; caption=&amp;quot;Outer surface protein A (OspA) in complex with the LA-2 Fab antibody ([[1fj1|1FJ1]]).&amp;quot; scene=&amp;quot;Studio:G2SecL03/Ospafab-orig/3&amp;quot;/&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Risk of developing Lyme disease can be mitigated by staying clear of areas with populations of ticks, wearing proper attire to minimize easily bitten areas of the body, and using insect repellents containing [http://en.wikipedia.org/wiki/DEET DEET] (N,N-diethy-m-toluamide). However, another effective means for prevention could be possible by using an outer surface protein from &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; in the creation of a vaccine.&amp;lt;ref name=&amp;quot;nigrovic&amp;quot;&amp;gt;PMID: 16893489&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
The membrane composition of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; is abundant in both OspA and OspB, and the two proteins share a 53% similarity in their primary sequences. Both OspA and OspB are expressed in the tick&#039;s gut and downregulated during feeding and aid in its survivability; however, OspA is overall less varied and reactive than OspB, which has greater variability.&amp;lt;ref name=&amp;quot;becker&amp;quot;&amp;gt;PMID: 15713683&amp;lt;/ref&amp;gt; The relatively conserved sequence of OspA thus lends itself better to study and application toward the development of a vaccine for a broader range of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; strains in the treatment of Lyme disease than that of OspB. The first vaccine used a purified recombinant form of OspA and functioned in blocking transmission of the spirochetes expressing OspA from tick to host during feeding, killing them while still attached to the tick&#039;s gut.&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;battisti&amp;quot;&amp;gt;PMID: 18779341&amp;lt;/ref&amp;gt; The vaccine, Lymerix, had shown 76% and 92% effectiveness in separate clinical trials in which patients were treated for two years following a three-dose schedule. However, the vaccination was suspended from use in 2002 when opponents claimed the [http://en.wikipedia.org/wiki/Immunoglobulin_G IgG antibodies] for OspA were associated with the onset of severe chronic arthritis, as well as other side effects affecting immunity.&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;plotkin&amp;quot;&amp;gt;PMID: 21217175&amp;lt;/ref&amp;gt;  This fact, in conjunction with the desire for a more widespread vaccine treating multiple strains of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt;, has spurred research towards a new vaccine.&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
To address the concerns of vaccine with broader protection, creation of a chimera, mixing the OspA of different strains of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; would be ideal. Study of the epitope of &amp;lt;scene name=&#039;Studio:G2SecL03/Ospafab-ospa/3&#039; target=&amp;quot;complex&amp;quot;&amp;gt;OspA&amp;lt;/scene&amp;gt; and its &amp;lt;scene name=&#039;Studio:G2SecL03/Ospafab-interaction/3&#039; target=&amp;quot;complex&amp;quot;&amp;gt;interactions&amp;lt;/scene&amp;gt; with the murine monoclonal antibody &amp;lt;scene name=&#039;Studio:G2SecL03/Ospafab-fab/3&#039; target=&amp;quot;complex&amp;quot;&amp;gt;LA-2&amp;lt;/scene&amp;gt; have proved useful in determining effectiveness of a given vaccine trial as high levels of antibodies in test sera compete against LA-2 for binding with OspA. LA-2 makes direct contact with three exposed loops of the C-terminus of OspA. The recognition of OspA by LA-2 requires an induced fit mechanism where these three loops undergo conformational changes to optimize their interaction in the complex. &amp;lt;ref name=&amp;quot;ding&amp;quot;&amp;gt;PMID: 11183781&amp;lt;/ref&amp;gt; &lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h3&amp;gt;Scene List for the OspA:LA-2 Complex&amp;lt;/h3&amp;gt;&lt;br /&gt;
&amp;lt;ul&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospafab-orig/3&#039; target=&amp;quot;complex&amp;quot;&amp;gt;Reset model&amp;lt;/scene&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospafab-fab/3&#039; target=&amp;quot;complex&amp;quot;&amp;gt;LA-2&amp;lt;/scene&amp;gt; Fab antibody (Bluish regions indicate heavy chains (chains B &amp;amp; D of 1FJ1) and greenish regions indicate light chains (chains A &amp;amp; C of 1FJ1))&amp;lt;/li&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospafab-ospa/3&#039; target=&amp;quot;complex&amp;quot;&amp;gt;OspA&amp;lt;/scene&amp;gt; proteins in complex with the LA-2 Fab antibody (chains E &amp;amp; F of 1FJ1)&amp;lt;/li&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospafab-interaction/3&#039; target=&amp;quot;complex&amp;quot;&amp;gt;Closeup&amp;lt;/scene&amp;gt; of the OspA antigen : LA-2 Fab antibody interactions&amp;lt;/li&amp;gt;&lt;br /&gt;
&amp;lt;/ul&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;Structure of OspA&amp;lt;/h2&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;Structure load=&amp;quot;1fj1&amp;quot; size=&amp;quot;350&amp;quot; frame=&amp;quot;true&amp;quot; align=&amp;quot;right&amp;quot; name=&amp;quot;OspA-manip&amp;quot; caption=&amp;quot;Outer surface protein A (OspA) ([[1fj1|1FJ1]], chain F)&amp;quot; scene=&amp;quot;Studio:G2SecL03/Ospa_3loopscartoon/3&amp;quot;/&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
OspA is made up of 273 residues over 21 anti-parallel β-sheets and a single α-helix. It&#039;s folded conformation is divided into three main sections: a N-terminus &amp;quot;sandwich,&amp;quot; a central region comprising of several β-sheets and a C-terminus &amp;quot;barrel&amp;quot; domain.&amp;lt;ref name=&amp;quot;ding&amp;quot;&amp;gt;PMID: 11183781&amp;lt;/ref&amp;gt; The folded regions at its ends are connected by a single β-sheet layer in the middle, giving the protein the unique shape of a dumbell.&amp;lt;ref name=&amp;quot;makabe&amp;quot;&amp;gt;PMID: 16823038&amp;lt;/ref&amp;gt; &lt;br /&gt;
&lt;br /&gt;
There are &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops/4&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;three loops&amp;lt;/scene&amp;gt; at the C-terminus of OspA that are important in binding with the LA-2 Fab antibody, whose interactions provide great insight into vaccine research and effectiveness. These three loops are linearly arranged and form protruding ridge at the C-terminus of OspA. Within these loops, there are &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-nor/3&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;three residues&amp;lt;/scene&amp;gt; &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-r/2&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;(show residue R-groups)&amp;lt;/scene&amp;gt; where there are distinct variations between the different strains of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; and serve as potential targets for the creation of a broader vaccine.&amp;lt;ref name=&amp;quot;ding&amp;quot;&amp;gt;PMID: 11183781&amp;lt;/ref&amp;gt; &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops3res/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;(display both the three loops and three residues together)&amp;lt;/scene&amp;gt; &lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-loop1/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Loop 1&amp;lt;/scene&amp;gt;, (residues 203-220), is important in showing variation amongst the different strains of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; as well as being optimally conformed for binding without steric hindrance. &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-loop2/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Loop 2&amp;lt;/scene&amp;gt; (residues 224-233) and &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-loop3/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Loop 3&amp;lt;/scene&amp;gt; (residues 246-257) are more strongly conserved than Loop 1 but also help to show some variation amongst strains. The LA-2 Fab antibody readily recognizes OspA from &amp;lt;i&amp;gt;B. burgdorferi&amp;lt;/i&amp;gt;, but does not recognize that from &amp;lt;i&amp;gt;B. afzelii&amp;lt;/i&amp;gt; or &amp;lt;i&amp;gt;B. garinii&amp;lt;/i&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
Between &amp;lt;i&amp;gt;B. burgdorferi&amp;lt;/i&amp;gt; and &amp;lt;i&amp;gt;B. afzelii&amp;lt;/i&amp;gt; genetic sequences are generally invariant, but two residues change between the species: &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-ala208/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Alanine (Ala) 208&amp;lt;/scene&amp;gt; in &amp;lt;i&amp;gt;B. burgdorferi&amp;lt;/i&amp;gt; is a Glutamine (Gln) in &amp;lt;i&amp;gt;B. afzelii&amp;lt;/i&amp;gt;, and &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-asn251/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Asparagine (Asn) 251&amp;lt;/scene&amp;gt; in &amp;lt;i&amp;gt;B. burgdorferi&amp;lt;/i&amp;gt; is an Alanine (Ala) in &amp;lt;i&amp;gt;B. afzelii&amp;lt;/i&amp;gt;. &amp;lt;i&amp;gt;B. garinii&amp;lt;/i&amp;gt; has more variation and in addition to the previous two differences, having at least one more difference, where &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-ala215/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Alanine (Ala) 215&amp;lt;/scene&amp;gt; in &amp;lt;i&amp;gt;B. burgdorferi&amp;lt;/i&amp;gt; is a Lysine (Lys), and sometimes also has a deletion at &amp;lt;i&amp;gt;B. burgdorferi&amp;lt;/i&amp;gt;’s Alanine 208. LA-2 and OspA of &amp;lt;i&amp;gt;B. burgdorferi&amp;lt;/i&amp;gt; form a tight interface when binding, and the longer Glutamine (Gln) sidechain found in &amp;lt;i&amp;gt;B. afzelii&amp;lt;/i&amp;gt; and &amp;lt;i&amp;gt;B. garinii&amp;lt;/i&amp;gt; is more difficult to accommodate, causing less binding. A chimera that was weakly recognized by LA-2 was made with parts of loop 1 from &amp;lt;i&amp;gt;B. burgdorferi&amp;lt;/i&amp;gt;, and loops 2 and 3 from &amp;lt;i&amp;gt;B. garinii&amp;lt;/i&amp;gt;.&amp;lt;ref name=&amp;quot;ding&amp;quot;&amp;gt;PMID: 11183781&amp;lt;/ref&amp;gt; Recently, a different kind of chimera has been made which combined the proximal region of &amp;lt;i&amp;gt;B. burgdorferi&amp;lt;/i&amp;gt; and distal region of &amp;lt;i&amp;gt;B. afzelii&amp;lt;/i&amp;gt;, and was able to successfully protect mice from both species. 8&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h3&amp;gt;Scene List for OspA&amp;lt;/h3&amp;gt;&lt;br /&gt;
&amp;lt;ul&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa_3loopscartoon/3&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Reset model&amp;lt;/scene&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops/4&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Three loops&amp;lt;/scene&amp;gt; in C-terminus (close up)&lt;br /&gt;
         &amp;lt;ul&amp;gt;&lt;br /&gt;
           &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-loop1/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Loop 1&amp;lt;/scene&amp;gt; (residues 203-220)&amp;lt;/li&amp;gt;&lt;br /&gt;
           &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-loop2/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Loop 2&amp;lt;/scene&amp;gt; (residues 224-233)&amp;lt;/li&amp;gt;&lt;br /&gt;
           &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-loop3/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Loop 3&amp;lt;/scene&amp;gt; (residues 246-257)&amp;lt;/li&amp;gt;&lt;br /&gt;
         &amp;lt;/ul&amp;gt;&lt;br /&gt;
     &amp;lt;/li&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-nor/3&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Three residues&amp;lt;/scene&amp;gt; in C-terminus (Ala208, Ala215 and Asn251 in &amp;lt;i&amp;gt;B. burgdorferi&amp;lt;/i&amp;gt;; also hides R-groups)&lt;br /&gt;
         &amp;lt;ul&amp;gt;&lt;br /&gt;
           &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-r/2&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Display R-groups&amp;lt;/scene&amp;gt; of Ala208, Ala215 and Asn251&amp;lt;/li&amp;gt;&lt;br /&gt;
           &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-ala208/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Alanine (Ala) 208&amp;lt;/scene&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
           &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-ala215/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Alanine (Ala) 215&amp;lt;/scene&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
           &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-asn251/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Asparagine (Asn) 251&amp;lt;/scene&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
         &amp;lt;/ul&amp;gt;&lt;br /&gt;
     &amp;lt;/li&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops3res/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Three loops and all three residues (with R-groups included)&amp;lt;/scene&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
&amp;lt;/ul&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;References&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;references /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;External Links&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;ul&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://www.who.int/ith/diseases/lyme/en/index.html World Health Organization: Lyme Disease]&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://www.ncbi.nlm.nih.gov/pubmedhealth/PMH0002296/ PubMed Health: Lyme Disease]&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://www.aldf.com/ American Lyme Disease Foundation]&lt;br /&gt;
&amp;lt;/ul&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;Proteopedia Page Contributors and Editors&amp;lt;/h2&amp;gt;&lt;br /&gt;
[http://proteopedia.org/wiki/index.php/User:Kimberly_Slade Kimberly Slade], [http://proteopedia.org/wiki/index.php/User:Cara_Lin Cara Lin], [http://proteopedia.org/wiki/index.php/User:Andrea_Mullen Andrea Mullen], [http://proteopedia.org/wiki/index.php/User:Jenny_Kim_Kim Jenny Kim Kim]&lt;br /&gt;
&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&lt;/div&gt;</summary>
		<author><name>Jenny Kim Kim</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=User:Marvin_O%27Neal/OspA&amp;diff=1388244</id>
		<title>User:Marvin O&#039;Neal/OspA</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=User:Marvin_O%27Neal/OspA&amp;diff=1388244"/>
		<updated>2012-05-04T20:47:32Z</updated>

		<summary type="html">&lt;p&gt;Jenny Kim Kim: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;Structure load=&amp;quot;1fj1&amp;quot; size=&amp;quot;350&amp;quot; frame=&amp;quot;true&amp;quot; align=&amp;quot;right&amp;quot; name=&amp;quot;OspA-secondary&amp;quot; caption=&amp;quot;Outer surface protein A (OspA) ([[1fj1|1FJ1]], chain F) showing secondary structures.&amp;quot; scene=&amp;quot;Studio:G2SecL03/Ospa_default/5&amp;quot;/&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
&amp;lt;b&amp;gt;Outer Surface Protein A (OspA)&amp;lt;/b&amp;gt; is a major lipoprotein found on the surface of [http://en.wikipedia.org/wiki/Spirochaete spirochetes] from the genus [http://en.wikipedia.org/wiki/Borrelia &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt;] and is comprised of 21 anti-parallel β-sheets and a single α-helix. OspA&#039;s expression is regulated at different points in time, from being downregulated during the tick&#039;s feeding process on its host to being upregulated in the host&#039;s cerebrospinal fluid (CSF) to induce inflammatory response, resulting in acute Lyme [http://en.wikipedia.org/wiki/Neuroborreliosis neuroborreliosis]. OspA has also been used as a vector in working towards the development of a vaccine for [http://en.wikipedia.org/wiki/Lyme_disease Lyme disease].&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;Introduction&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Lyme disease is caused by the spirochete &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; and spread via hard-bodied ticks belonging to the family [http://en.wikipedia.org/wiki/Ixodidae &amp;lt;i&amp;gt;Ixodidae&amp;lt;/i&amp;gt;]. The &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; spirochetes are motile, helical organisms have several lipoproteins exposed on the surfaces of their membranes that invoke a response from host immune systems. The predominant group of these is classified as the outer surface proteins (Osps). Both the pathogenesis of Lyme disease as well as the host&#039;s immune response stem from the effects of the spirochete&#039;s presence and involvement in the system.&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
The major strain of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; in the United States is [http://en.wikipedia.org/wiki/Borrelia_burgdorferi &amp;lt;i&amp;gt;Borrelia burgdorferi&amp;lt;/i&amp;gt;] &amp;lt;i&amp;gt;sensu stricto (Bb.)&amp;lt;/i&amp;gt;, with 20-100 cases of Lyme disease being reported per 100,000 people. In Europe, Lyme disease cases are more prevalent, with 100-130 diagnoses per 100,000 people, but are caused by the spirochetes [http://en.wikipedia.org/wiki/Borrelia_afzelii &amp;lt;i&amp;gt;Borrelia afzelii (Ba.)&amp;lt;/i&amp;gt;] and [http://en.wikipedia.org/wiki/Borrelia_garinii &amp;lt;i&amp;gt;Borrelia garinii (Bg.)&amp;lt;/i&amp;gt;] in addition to &amp;lt;i&amp;gt;B. burgdorferi&amp;lt;/i&amp;gt;.&amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;ding&amp;quot;&amp;gt;PMID: 11183781&amp;lt;/ref&amp;gt; &lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Lyme disease is a debilitating condition that begins with a characteristic bullseye rash known as an [http://en.wikipedia.org/wiki/Erythema_chronicum_migrans erythema migrans (EM)] as well as the development of lesions on other parts of the body, not just at the site of the tick&#039;s attachment to its host. Secondary stage symptoms include affecting the heart, joints, and both the central and peripheral nervous systems.  OspA is used in adhering to the tick&#039;s gut by binding with the tick receptor for OspA (TROSPA), a receptor necessary for the colonization of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; inside the tick. High levels of both OspA and TROSPA are found prior to feeding, but are downregulated once the feeding process begins in order to initiate transmission into the host.&amp;lt;ref name=&amp;quot;pal&amp;quot;&amp;gt;PMID: 15537536&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
While feeding, OspA is downregulated in order to evade an immune response from the incoming host blood into the gut, releasing the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; from the gut wall and migrating into the tick&#039;s salivary glands, thereby allowing it to enter the host through the bite. This is evidenced by the fact that patients with Lyme disease have been found to not possess OspA antibodies in the early stages of the disease.&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt; OspA is the protein most related to acute Lyme neuroborreliosis (LNB), the neurological manifestations of Lyme disease.  &lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;OspA&#039;s Role in Invasion&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Once inside the host, the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; has a great number of mechanisms available to actively suppress the host&#039;s immune system response and neutralize its effector mechanisms, such as the expression of another outer surface protein, OspC, which prevents susceptibility to the host&#039;s [http://en.wikipedia.org/wiki/Innate_immune_system innate immunity] and [http://en.wikipedia.org/wiki/Complement_system complement systems]. Additionally, &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; is capable of suppressing many of its surface proteins to reduce its detectability, but can also utilize protective means by temporarily expressing them when needed.&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h3&amp;gt;Acute Lyme Neuroborreliosis (LNB)&amp;lt;/h3&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Acute Lyme Neuroborreliosis (LNB) is part of the second stage of Lyme disease in which the spirochete invades the peripheral and central nervous systems (CNS). Symptoms of LNB include: meningoradiculitis with inflammation of the nerve roots and [http://en.wikipedia.org/wiki/Radicular_pain radiculitis] (Bannwarth’s syndrome), lymphocytic meningitis, and cranial and [http://www.ncbi.nlm.nih.gov/pubmedhealth/PMH0001619/ peripheral neuritis]. In Europe, the strain predominantly found in the CSF of patients with Bannwarth&#039;s syndrome is &amp;lt;i&amp;gt;B. garinii&amp;lt;/i&amp;gt;. However, in the United States, Bannwarth&#039;s syndrome is rare and the most common manifestations of Lyme neuroborreliosis is [http://en.wikipedia.org/wiki/Meningitis meningitis], caused by &amp;lt;i&amp;gt;B. burgdorferi&amp;lt;/i&amp;gt;. The presence of OspA in the cerebrospinal fluid (CSF) is responsible for this complex inflammatory response in the brain that leads to the neuroborreliosis.&amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h3&amp;gt;Evasion and the Extracellular Matrix&amp;lt;/h3&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
The &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; are able to hide in the [http://en.wikipedia.org/wiki/Extracellular_matrix extracellular matrix], allowing it to survive by avoiding [http://en.wikipedia.org/wiki/Leukocytes leukocytes] circulating in the bloodstream. OspA can rapidly bind to plasminogen, which becomes [http://en.wikipedia.org/wiki/Plasmin plasmin] once activated, and degrades the extracellular matrix. By binding to plasminogen, &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; could be exploiting its function and utilizing it to invade the extracellular matrix. However, due to the fact that OspA is downregulated during feeding, and stays unexpressed, a different mechanism may be used instead. Additionally, &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; induces the local upregulation of matrix metalloproteinase-9, causing the digestion of the surrounding extracellular matrix. &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; can also bind to several proteins in the extracellular matrix, such as [http://en.wikipedia.org/wiki/Fibronectin fibronectin], [http://en.wikipedia.org/wiki/Integrins integrins] or [http://en.wikipedia.org/wiki/Decorin decorin], which can aid in the spread and survival of the spirochetes in these tissues.&amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h3&amp;gt;Migration Across the Blood-Brain Barrier&amp;lt;/h3&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
It is not fully understood how &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; get past the [http://en.wikipedia.org/wiki/Blood-brain_barrier blood-brain barrier], though some researchers suggest a paracellular route, which involves a process using transient tether-type associations, short-term dragging interactions, and stationary adhesion. There is evidence that &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; utilizes OspA in the transient tethering stage. The blood-brain barrier is composed of brain microvascular endothelial cells, astrocytes, a basement membrane, pericytes, and neurons. OspA is a major adherent molecule to brain microvascular cells by binding to the CD40 receptors outside, which results in events that are typically seen when leukocytes cross the blood brain barrier. &lt;br /&gt;
&lt;br /&gt;
Activation of CD40 receptors leads to the production of proinflammatory cytokines and enhanced expression of ICAM-1, E-selectin and VCAM-1, resulting in increased cell binding, and the formation of fenestrations due to increased vascular endothelial growth factor, and vascular permeability factor. OspA might be mimicking leukocytes in order to cross the blood-brain barrier.  However not all strains of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; can utilize OspA to do this, OspA only contributes about 70% to adherence, and  other &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; proteins are also needed in this process. It has also been seen that OspA mediates the adhesion of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; to murine neural and glial cell lines. &amp;lt;ref name=&amp;quot;pulzova&amp;quot;&amp;gt;PMID: 22355605&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h3&amp;gt;Role in Inflammation&amp;lt;/h3&amp;gt;&lt;br /&gt;
&lt;br /&gt;
[[Image:G2L03-OspA-mechanism.jpg|thumb|300px|Mechanism of the host inflammatory response to OspA]]&lt;br /&gt;
&lt;br /&gt;
There are six steps involved in the host&#039;s inflammatory response to OspA: &amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt;&amp;lt;br&amp;gt;&lt;br /&gt;
&amp;lt;ol&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;When the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; enter the host’s CNS they encounter several different types of immune cells such as [http://en.wikipedia.org/wiki/Monocyte monocytes], [http://en.wikipedia.org/wiki/Macrophages macrophages], and [http://en.wikipedia.org/wiki/Dendritic_cells dendritic cells]. While in the CSF, outer surface protein A (OspA) is upregulated and it’s increased expression promotes recognition by a specific receptor on a monocyte.&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;The OspA-bound monocyte then releases proinflammatory [http://en.wikipedia.org/wiki/Cytokine cytokines] (i.e. [http://en.wikipedia.org/wiki/Interferon interferon]), as well as [http://en.wikipedia.org/wiki/Chemokine chemokines], such as [http://en.wikipedia.org/wiki/CXCL13 CXCL13]. In patients with LNB, there is an observed increase in the levels of these cytokines and chemokines in their CSF. The production of chemokines leads to the recruitment of other immune cells to the site of infection.&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://en.wikipedia.org/wiki/B_lymphocyte B-lymphocytes] respond to the new concentration gradient of CXCL13 between the blood and CSF and migrate into the CSF.&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;B-lymphocytes undergo [http://en.wikipedia.org/wiki/Receptor-mediated_endocytosis receptor-mediated endocytosis], consuming the OspA antigens present in the CSF, thereby triggering its activation. The B-lymphocytes then are able to differentiate and mature into  [http://en.wikipedia.org/wiki/Plasma_cells plasma cells].&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;The plasma cells create large quantities of anti-OspA antibodies specific to this strain of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; and release them into the CSF.&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;The anti-OspA antibodies will then bind to the OspA on the spirochete’s membrane, thus killing the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt;.&amp;lt;/li&amp;gt;&lt;br /&gt;
&amp;lt;/ol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
This process is two-sided in the sense that the OspA aids in the pathogenesis of new symptoms (neuroborreliosis) through the chemokine’s actions, as well as initiating the signaling cascade to destroy itself.&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;OspA Vaccination&amp;lt;/h2&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;Structure load=&amp;quot;1fj1&amp;quot; size=&amp;quot;350&amp;quot; frame=&amp;quot;true&amp;quot; align=&amp;quot;right&amp;quot; name=&amp;quot;complex&amp;quot; caption=&amp;quot;Outer surface protein A (OspA) in complex with the LA-2 Fab antibody ([[1fj1|1FJ1]]).&amp;quot; scene=&amp;quot;Studio:G2SecL03/Ospafab-orig/3&amp;quot;/&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Risk of developing Lyme disease can be mitigated by staying clear of areas with populations of ticks, wearing proper attire to minimize easily bitten areas of the body, and using insect repellents containing [http://en.wikipedia.org/wiki/DEET DEET] (N,N-diethy-m-toluamide). However, another effective means for prevention could be possible by using an outer surface protein from &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; in the creation of a vaccine.&amp;lt;ref name=&amp;quot;nigrovic&amp;quot;&amp;gt;PMID: 16893489&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
The membrane composition of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; is abundant in both OspA and OspB, and the two proteins share a 53% similarity in their primary sequences. Both OspA and OspB are expressed in the tick&#039;s gut and downregulated during feeding and aid in its survivability; however, OspA is overall less varied and reactive than OspB, which has greater variability.&amp;lt;ref name=&amp;quot;becker&amp;quot;&amp;gt;PMID: 15713683&amp;lt;/ref&amp;gt; The relatively conserved sequence of OspA thus lends itself better to study and application toward the development of a vaccine for a broader range of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; strains in the treatment of Lyme disease than that of OspB. The first vaccine used a purified recombinant form of OspA and functioned in blocking transmission of the spirochetes expressing OspA from tick to host during feeding, killing them while still attached to the tick&#039;s gut.&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;battisti&amp;quot;&amp;gt;PMID: 18779341&amp;lt;/ref&amp;gt; The vaccine, Lymerix, had shown 76% and 92% effectiveness in separate clinical trials in which patients were treated for two years following a three-dose schedule. However, the vaccination was suspended from use in 2002 when opponents claimed the [http://en.wikipedia.org/wiki/Immunoglobulin_G IgG antibodies] for OspA were associated with the onset of severe chronic arthritis, as well as other side effects affecting immunity.&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;plotkin&amp;quot;&amp;gt;PMID: 21217175&amp;lt;/ref&amp;gt;  This fact, in conjunction with the desire for a more widespread vaccine treating multiple strains of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt;, has spurred research towards a new vaccine.&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
To address the concerns of vaccine with broader protection, creation of a chimera, mixing the OspA of different strains of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; would be ideal. Study of the epitope of &amp;lt;scene name=&#039;Studio:G2SecL03/Ospafab-ospa/3&#039; target=&amp;quot;complex&amp;quot;&amp;gt;OspA&amp;lt;/scene&amp;gt; and its &amp;lt;scene name=&#039;Studio:G2SecL03/Ospafab-interaction/3&#039; target=&amp;quot;complex&amp;quot;&amp;gt;interactions&amp;lt;/scene&amp;gt; with the murine monoclonal antibody &amp;lt;scene name=&#039;Studio:G2SecL03/Ospafab-fab/3&#039; target=&amp;quot;complex&amp;quot;&amp;gt;LA-2&amp;lt;/scene&amp;gt; have proved useful in determining effectiveness of a given vaccine trial as high levels of antibodies in test sera compete against LA-2 for binding with OspA. LA-2 makes direct contact with three exposed loops of the C-terminus of OspA. The recognition of OspA by LA-2 requires an induced fit mechanism where these three loops undergo conformational changes to optimize their interaction in the complex. &amp;lt;ref name=&amp;quot;ding&amp;quot;&amp;gt;PMID: 11183781&amp;lt;/ref&amp;gt; &lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h3&amp;gt;Scene List for the OspA:LA-2 Complex&amp;lt;/h3&amp;gt;&lt;br /&gt;
&amp;lt;ul&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospafab-orig/3&#039; target=&amp;quot;complex&amp;quot;&amp;gt;Reset model&amp;lt;/scene&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospafab-fab/3&#039; target=&amp;quot;complex&amp;quot;&amp;gt;LA-2&amp;lt;/scene&amp;gt; Fab antibody (Bluish regions indicate heavy chains (chains B &amp;amp; D of 1FJ1) and greenish regions indicate light chains (chains A &amp;amp; C of 1FJ1))&amp;lt;/li&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospafab-ospa/3&#039; target=&amp;quot;complex&amp;quot;&amp;gt;OspA&amp;lt;/scene&amp;gt; proteins in complex with the LA-2 Fab antibody (chains E &amp;amp; F of 1FJ1)&amp;lt;/li&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospafab-interaction/3&#039; target=&amp;quot;complex&amp;quot;&amp;gt;Closeup&amp;lt;/scene&amp;gt; of the OspA antigen : LA-2 Fab antibody interactions&amp;lt;/li&amp;gt;&lt;br /&gt;
&amp;lt;/ul&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;Structure of OspA&amp;lt;/h2&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;Structure load=&amp;quot;1fj1&amp;quot; size=&amp;quot;350&amp;quot; frame=&amp;quot;true&amp;quot; align=&amp;quot;right&amp;quot; name=&amp;quot;OspA-manip&amp;quot; caption=&amp;quot;Outer surface protein A (OspA) ([[1fj1|1FJ1]], chain F)&amp;quot; scene=&amp;quot;Studio:G2SecL03/Ospa_3loopscartoon/3&amp;quot;/&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
OspA is made up of 273 residues over 21 anti-parallel β-sheets and a single α-helix. It&#039;s folded conformation is divided into three main sections: a N-terminus &amp;quot;sandwich,&amp;quot; a central region comprising of several β-sheets and a C-terminus &amp;quot;barrel&amp;quot; domain.&amp;lt;ref name=&amp;quot;ding&amp;quot;&amp;gt;PMID: 11183781&amp;lt;/ref&amp;gt; The folded regions at its ends are connected by a single β-sheet layer in the middle, giving the protein the unique shape of a dumbell.&amp;lt;ref name=&amp;quot;makabe&amp;quot;&amp;gt;PMID: 16823038&amp;lt;/ref&amp;gt; &lt;br /&gt;
&lt;br /&gt;
There are &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops/4&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;three loops&amp;lt;/scene&amp;gt; at the C-terminus of OspA that are important in binding with the LA-2 Fab antibody, whose interactions provide great insight into vaccine research and effectiveness. These three loops are linearly arranged and form protruding ridge at the C-terminus of OspA. Within these loops, there are &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-nor/3&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;three residues&amp;lt;/scene&amp;gt; &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-r/2&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;(show residue R-groups)&amp;lt;/scene&amp;gt; where there are distinct variations between the different strains of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; and serve as potential targets for the creation of a broader vaccine.&amp;lt;ref name=&amp;quot;ding&amp;quot;&amp;gt;PMID: 11183781&amp;lt;/ref&amp;gt; &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops3res/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;(display both the three loops and three residues together)&amp;lt;/scene&amp;gt; &lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-loop1/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Loop 1&amp;lt;/scene&amp;gt;, (residues 203-220), is important in showing variation amongst the different strains of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; as well as being optimally conformed for binding without steric hindrance. &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-loop2/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Loop 2&amp;lt;/scene&amp;gt; (residues 224-233) and &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-loop3/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Loop 3&amp;lt;/scene&amp;gt; (residues 246-257) are more strongly conserved than Loop 1 but also help to show some variation amongst strains. The LA-2 Fab antibody readily recognizes OspA from &amp;lt;i&amp;gt;B. burgdorferi&amp;lt;/i&amp;gt;, but does not recognize that from &amp;lt;i&amp;gt;B. afzelii&amp;lt;/i&amp;gt; or &amp;lt;i&amp;gt;B. garinii&amp;lt;/i&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
Between Bb. and Ba. genetic sequences are generally invariant, but two residues change between the species, ALA 208 &amp;lt;&amp;lt;ALA 208&amp;gt;&amp;gt; in Bb. is GLN in Ba., and ASN 251 &amp;lt;&amp;lt;ASN 251&amp;gt;&amp;gt; in Bb. is ALA in Ba.. Bg. has more variation and in addition to the previous two differences, has at least one more difference, where ALA 215 &amp;lt;&amp;lt;ALA 215&amp;gt;&amp;gt; in Bb. is LYS, Bg. sometimes also has a deletion at Bb.’s ALA 208. LA-2 and OspA of Bb. form a tight interface when binding, and the longer GLN sidechain found in Ba. and Bg. is more difficult to accommodate, causing less binding. A chimera that was weakly recognized by LA-2 was made with parts of loop 1 from Bb., and loops 2 and 3 from Bg. 5 Recently, a different kind of chimera has been made which combined the proximal region of Bb. and distal region of Ba., and was able to successfully protect mice from both species. 8&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h3&amp;gt;Scene List for OspA&amp;lt;/h3&amp;gt;&lt;br /&gt;
&amp;lt;ul&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa_3loopscartoon/3&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Reset model&amp;lt;/scene&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops/4&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Three loops&amp;lt;/scene&amp;gt; in C-terminus (close up)&lt;br /&gt;
         &amp;lt;ul&amp;gt;&lt;br /&gt;
           &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-loop1/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Loop 1&amp;lt;/scene&amp;gt; (residues 203-220)&amp;lt;/li&amp;gt;&lt;br /&gt;
           &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-loop2/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Loop 2&amp;lt;/scene&amp;gt; (residues 224-233)&amp;lt;/li&amp;gt;&lt;br /&gt;
           &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-loop3/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Loop 3&amp;lt;/scene&amp;gt; (residues 246-257)&amp;lt;/li&amp;gt;&lt;br /&gt;
         &amp;lt;/ul&amp;gt;&lt;br /&gt;
     &amp;lt;/li&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-nor/3&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Three residues&amp;lt;/scene&amp;gt; in C-terminus (Ala208, Ala215 and Asn251 in &amp;lt;i&amp;gt;B. burgdorferi&amp;lt;/i&amp;gt;; also hides R-groups)&lt;br /&gt;
         &amp;lt;ul&amp;gt;&lt;br /&gt;
           &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-r/2&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Display R-groups&amp;lt;/scene&amp;gt; of Ala208, Ala215 and Asn251&amp;lt;/li&amp;gt;&lt;br /&gt;
         &amp;lt;/ul&amp;gt;&lt;br /&gt;
     &amp;lt;/li&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops3res/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Three loops and all three residues (with R-groups included)&amp;lt;/scene&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
&amp;lt;/ul&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;References&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;references /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;External Links&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;ul&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://www.who.int/ith/diseases/lyme/en/index.html World Health Organization: Lyme Disease]&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://www.ncbi.nlm.nih.gov/pubmedhealth/PMH0002296/ PubMed Health: Lyme Disease]&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://www.aldf.com/ American Lyme Disease Foundation]&lt;br /&gt;
&amp;lt;/ul&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;Proteopedia Page Contributors and Editors&amp;lt;/h2&amp;gt;&lt;br /&gt;
[http://proteopedia.org/wiki/index.php/User:Kimberly_Slade Kimberly Slade], [http://proteopedia.org/wiki/index.php/User:Cara_Lin Cara Lin], [http://proteopedia.org/wiki/index.php/User:Andrea_Mullen Andrea Mullen], [http://proteopedia.org/wiki/index.php/User:Jenny_Kim_Kim Jenny Kim Kim]&lt;br /&gt;
&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&lt;/div&gt;</summary>
		<author><name>Jenny Kim Kim</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=User:Marvin_O%27Neal/OspA&amp;diff=1388239</id>
		<title>User:Marvin O&#039;Neal/OspA</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=User:Marvin_O%27Neal/OspA&amp;diff=1388239"/>
		<updated>2012-05-04T20:46:24Z</updated>

		<summary type="html">&lt;p&gt;Jenny Kim Kim: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;Structure load=&amp;quot;1fj1&amp;quot; size=&amp;quot;350&amp;quot; frame=&amp;quot;true&amp;quot; align=&amp;quot;right&amp;quot; name=&amp;quot;OspA-secondary&amp;quot; caption=&amp;quot;Outer surface protein A (OspA) ([[1fj1|1FJ1]], chain F) showing secondary structures.&amp;quot; scene=&amp;quot;Studio:G2SecL03/Ospa_default/5&amp;quot;/&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
&amp;lt;b&amp;gt;Outer Surface Protein A (OspA)&amp;lt;/b&amp;gt; is a major lipoprotein found on the surface of [http://en.wikipedia.org/wiki/Spirochaete spirochetes] from the genus [http://en.wikipedia.org/wiki/Borrelia &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt;] and is comprised of 21 anti-parallel β-sheets and a single α-helix. OspA&#039;s expression is regulated at different points in time, from being downregulated during the tick&#039;s feeding process on its host to being upregulated in the host&#039;s cerebrospinal fluid (CSF) to induce inflammatory response, resulting in acute Lyme [http://en.wikipedia.org/wiki/Neuroborreliosis neuroborreliosis]. OspA has also been used as a vector in working towards the development of a vaccine for [http://en.wikipedia.org/wiki/Lyme_disease Lyme disease].&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;Introduction&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Lyme disease is caused by the spirochete &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; and spread via hard-bodied ticks belonging to the family [http://en.wikipedia.org/wiki/Ixodidae &amp;lt;i&amp;gt;Ixodidae&amp;lt;/i&amp;gt;]. The &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; spirochetes are motile, helical organisms have several lipoproteins exposed on the surfaces of their membranes that invoke a response from host immune systems. The predominant group of these is classified as the outer surface proteins (Osps). Both the pathogenesis of Lyme disease as well as the host&#039;s immune response stem from the effects of the spirochete&#039;s presence and involvement in the system.&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
The major strain of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; in the United States is [http://en.wikipedia.org/wiki/Borrelia_burgdorferi &amp;lt;i&amp;gt;Borrelia burgdorferi&amp;lt;/i&amp;gt;] &amp;lt;i&amp;gt;sensu stricto (Bb.)&amp;lt;/i&amp;gt;, with 20-100 cases of Lyme disease being reported per 100,000 people. In Europe, Lyme disease cases are more prevalent, with 100-130 diagnoses per 100,000 people, but are caused by the spirochetes [http://en.wikipedia.org/wiki/Borrelia_afzelii &amp;lt;i&amp;gt;Borrelia afzelii (Ba.)&amp;lt;/i&amp;gt;] and [http://en.wikipedia.org/wiki/Borrelia_garinii &amp;lt;i&amp;gt;Borrelia garinii (Bg.)&amp;lt;/i&amp;gt;] in addition to &amp;lt;i&amp;gt;B. burgdorferi&amp;lt;/i&amp;gt;.&amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;ding&amp;quot;&amp;gt;PMID: 11183781&amp;lt;/ref&amp;gt; &lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Lyme disease is a debilitating condition that begins with a characteristic bullseye rash known as an [http://en.wikipedia.org/wiki/Erythema_chronicum_migrans erythema migrans (EM)] as well as the development of lesions on other parts of the body, not just at the site of the tick&#039;s attachment to its host. Secondary stage symptoms include affecting the heart, joints, and both the central and peripheral nervous systems.  OspA is used in adhering to the tick&#039;s gut by binding with the tick receptor for OspA (TROSPA), a receptor necessary for the colonization of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; inside the tick. High levels of both OspA and TROSPA are found prior to feeding, but are downregulated once the feeding process begins in order to initiate transmission into the host.&amp;lt;ref name=&amp;quot;pal&amp;quot;&amp;gt;PMID: 15537536&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
While feeding, OspA is downregulated in order to evade an immune response from the incoming host blood into the gut, releasing the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; from the gut wall and migrating into the tick&#039;s salivary glands, thereby allowing it to enter the host through the bite. This is evidenced by the fact that patients with Lyme disease have been found to not possess OspA antibodies in the early stages of the disease.&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt; OspA is the protein most related to acute Lyme neuroborreliosis (LNB), the neurological manifestations of Lyme disease.  &lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;OspA&#039;s Role in Invasion&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Once inside the host, the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; has a great number of mechanisms available to actively suppress the host&#039;s immune system response and neutralize its effector mechanisms, such as the expression of another outer surface protein, OspC, which prevents susceptibility to the host&#039;s [http://en.wikipedia.org/wiki/Innate_immune_system innate immunity] and [http://en.wikipedia.org/wiki/Complement_system complement systems]. Additionally, &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; is capable of suppressing many of its surface proteins to reduce its detectability, but can also utilize protective means by temporarily expressing them when needed.&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h3&amp;gt;Acute Lyme Neuroborreliosis (LNB)&amp;lt;/h3&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Acute Lyme Neuroborreliosis (LNB) is part of the second stage of Lyme disease in which the spirochete invades the peripheral and central nervous systems (CNS). Symptoms of LNB include: meningoradiculitis with inflammation of the nerve roots and [http://en.wikipedia.org/wiki/Radicular_pain radiculitis] (Bannwarth’s syndrome), lymphocytic meningitis, and cranial and [http://www.ncbi.nlm.nih.gov/pubmedhealth/PMH0001619/ peripheral neuritis]. In Europe, the strain predominantly found in the CSF of patients with Bannwarth&#039;s syndrome is &amp;lt;i&amp;gt;B. garinii&amp;lt;/i&amp;gt;. However, in the United States, Bannwarth&#039;s syndrome is rare and the most common manifestations of Lyme neuroborreliosis is [http://en.wikipedia.org/wiki/Meningitis meningitis], caused by &amp;lt;i&amp;gt;B. burgdorferi&amp;lt;/i&amp;gt;. The presence of OspA in the cerebrospinal fluid (CSF) is responsible for this complex inflammatory response in the brain that leads to the neuroborreliosis.&amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h3&amp;gt;Evasion and the Extracellular Matrix&amp;lt;/h3&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
The &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; are able to hide in the [http://en.wikipedia.org/wiki/Extracellular_matrix extracellular matrix], allowing it to survive by avoiding [http://en.wikipedia.org/wiki/Leukocytes leukocytes] circulating in the bloodstream. OspA can rapidly bind to plasminogen, which becomes [http://en.wikipedia.org/wiki/Plasmin plasmin] once activated, and degrades the extracellular matrix. By binding to plasminogen, &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; could be exploiting its function and utilizing it to invade the extracellular matrix. However, due to the fact that OspA is downregulated during feeding, and stays unexpressed, a different mechanism may be used instead. Additionally, &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; induces the local upregulation of matrix metalloproteinase-9, causing the digestion of the surrounding extracellular matrix. &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; can also bind to several proteins in the extracellular matrix, such as [http://en.wikipedia.org/wiki/Fibronectin fibronectin], [http://en.wikipedia.org/wiki/Integrins integrins] or [http://en.wikipedia.org/wiki/Decorin decorin], which can aid in the spread and survival of the spirochetes in these tissues.&amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h3&amp;gt;Migration Across the Blood-Brain Barrier&amp;lt;/h3&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
It is not fully understood how &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; get past the [http://en.wikipedia.org/wiki/Blood-brain_barrier blood-brain barrier], though some researchers suggest a paracellular route, which involves a process using transient tether-type associations, short-term dragging interactions, and stationary adhesion. There is evidence that &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; utilizes OspA in the transient tethering stage. The blood-brain barrier is composed of brain microvascular endothelial cells, astrocytes, a basement membrane, pericytes, and neurons. OspA is a major adherent molecule to brain microvascular cells by binding to the CD40 receptors outside, which results in events that are typically seen when leukocytes cross the blood brain barrier. &lt;br /&gt;
&lt;br /&gt;
Activation of CD40 receptors leads to the production of proinflammatory cytokines and enhanced expression of ICAM-1, E-selectin and VCAM-1, resulting in increased cell binding, and the formation of fenestrations due to increased vascular endothelial growth factor, and vascular permeability factor. OspA might be mimicking leukocytes in order to cross the blood-brain barrier.  However not all strains of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; can utilize OspA to do this, OspA only contributes about 70% to adherence, and  other &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; proteins are also needed in this process. It has also been seen that OspA mediates the adhesion of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; to murine neural and glial cell lines. &amp;lt;ref name=&amp;quot;pulzova&amp;quot;&amp;gt;PMID: 22355605&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h3&amp;gt;Role in Inflammation&amp;lt;/h3&amp;gt;&lt;br /&gt;
&lt;br /&gt;
[[Image:G2L03-OspA-mechanism.jpg|thumb|300px|Mechanism of the host inflammatory response to OspA]]&lt;br /&gt;
&lt;br /&gt;
There are six steps involved in the host&#039;s inflammatory response to OspA: &amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt;&amp;lt;br&amp;gt;&lt;br /&gt;
&amp;lt;ol&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;When the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; enter the host’s CNS they encounter several different types of immune cells such as [http://en.wikipedia.org/wiki/Monocyte monocytes], [http://en.wikipedia.org/wiki/Macrophages macrophages], and [http://en.wikipedia.org/wiki/Dendritic_cells dendritic cells]. While in the CSF, outer surface protein A (OspA) is upregulated and it’s increased expression promotes recognition by a specific receptor on a monocyte.&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;The OspA-bound monocyte then releases proinflammatory [http://en.wikipedia.org/wiki/Cytokine cytokines] (i.e. [http://en.wikipedia.org/wiki/Interferon interferon]), as well as [http://en.wikipedia.org/wiki/Chemokine chemokines], such as [http://en.wikipedia.org/wiki/CXCL13 CXCL13]. In patients with LNB, there is an observed increase in the levels of these cytokines and chemokines in their CSF. The production of chemokines leads to the recruitment of other immune cells to the site of infection.&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://en.wikipedia.org/wiki/B_lymphocyte B-lymphocytes] respond to the new concentration gradient of CXCL13 between the blood and CSF and migrate into the CSF.&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;B-lymphocytes undergo [http://en.wikipedia.org/wiki/Receptor-mediated_endocytosis receptor-mediated endocytosis], consuming the OspA antigens present in the CSF, thereby triggering its activation. The B-lymphocytes then are able to differentiate and mature into  [http://en.wikipedia.org/wiki/Plasma_cells plasma cells].&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;The plasma cells create large quantities of anti-OspA antibodies specific to this strain of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; and release them into the CSF.&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;The anti-OspA antibodies will then bind to the OspA on the spirochete’s membrane, thus killing the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt;.&amp;lt;/li&amp;gt;&lt;br /&gt;
&amp;lt;/ol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
This process is two-sided in the sense that the OspA aids in the pathogenesis of new symptoms (neuroborreliosis) through the chemokine’s actions, as well as initiating the signaling cascade to destroy itself.&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;OspA Vaccination&amp;lt;/h2&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;Structure load=&amp;quot;1fj1&amp;quot; size=&amp;quot;350&amp;quot; frame=&amp;quot;true&amp;quot; align=&amp;quot;right&amp;quot; name=&amp;quot;complex&amp;quot; caption=&amp;quot;Outer surface protein A (OspA) in complex with the LA-2 Fab antibody ([[1fj1|1FJ1]]).&amp;quot; scene=&amp;quot;Studio:G2SecL03/Ospafab-orig/3&amp;quot;/&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Risk of developing Lyme disease can be mitigated by staying clear of areas with populations of ticks, wearing proper attire to minimize easily bitten areas of the body, and using insect repellents containing [http://en.wikipedia.org/wiki/DEET DEET] (N,N-diethy-m-toluamide). However, another effective means for prevention could be possible by using an outer surface protein from &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; in the creation of a vaccine.&amp;lt;ref name=&amp;quot;nigrovic&amp;quot;&amp;gt;PMID: 16893489&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
The membrane composition of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; is abundant in both OspA and OspB, and the two proteins share a 53% similarity in their primary sequences. Both OspA and OspB are expressed in the tick&#039;s gut and downregulated during feeding and aid in its survivability; however, OspA is overall less varied and reactive than OspB, which has greater variability.&amp;lt;ref name=&amp;quot;becker&amp;quot;&amp;gt;PMID: 15713683&amp;lt;/ref&amp;gt; The relatively conserved sequence of OspA thus lends itself better to study and application toward the development of a vaccine for a broader range of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; strains in the treatment of Lyme disease than that of OspB. The first vaccine used a purified recombinant form of OspA and functioned in blocking transmission of the spirochetes expressing OspA from tick to host during feeding, killing them while still attached to the tick&#039;s gut.&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;battisti&amp;quot;&amp;gt;PMID: 18779341&amp;lt;/ref&amp;gt; The vaccine, Lymerix, had shown 76% and 92% effectiveness in separate clinical trials in which patients were treated for two years following a three-dose schedule. However, the vaccination was suspended from use in 2002 when opponents claimed the [http://en.wikipedia.org/wiki/Immunoglobulin_G IgG antibodies] for OspA were associated with the onset of severe chronic arthritis, as well as other side effects affecting immunity.&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;plotkin&amp;quot;&amp;gt;PMID: 21217175&amp;lt;/ref&amp;gt;  This fact, in conjunction with the desire for a more widespread vaccine treating multiple strains of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt;, has spurred research towards a new vaccine.&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
To address the concerns of vaccine with broader protection, creation of a chimera, mixing the OspA of different strains of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; would be ideal. Study of the epitope of &amp;lt;scene name=&#039;Studio:G2SecL03/Ospafab-ospa/3&#039; target=&amp;quot;complex&amp;quot;&amp;gt;OspA&amp;lt;/scene&amp;gt; and its &amp;lt;scene name=&#039;Studio:G2SecL03/Ospafab-interaction/3&#039; target=&amp;quot;complex&amp;quot;&amp;gt;interactions&amp;lt;/scene&amp;gt; with the murine monoclonal antibody &amp;lt;scene name=&#039;Studio:G2SecL03/Ospafab-fab/3&#039; target=&amp;quot;complex&amp;quot;&amp;gt;LA-2&amp;lt;/scene&amp;gt; have proved useful in determining effectiveness of a given vaccine trial as high levels of antibodies in test sera compete against LA-2 for binding with OspA. LA-2 makes direct contact with three exposed loops of the C-terminus of OspA. The recognition of OspA by LA-2 requires an induced fit mechanism where these three loops undergo conformational changes to optimize their interaction in the complex. &amp;lt;ref name=&amp;quot;ding&amp;quot;&amp;gt;PMID: 11183781&amp;lt;/ref&amp;gt; &lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h3&amp;gt;List of Available Scenes for the OspA:LA-2 Complex&amp;lt;/h3&amp;gt;&lt;br /&gt;
&amp;lt;ul&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospafab-orig/3&#039; target=&amp;quot;complex&amp;quot;&amp;gt;Reset model&amp;lt;/scene&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospafab-fab/3&#039; target=&amp;quot;complex&amp;quot;&amp;gt;LA-2&amp;lt;/scene&amp;gt; Fab antibody (Bluish regions indicate heavy chains (chains B &amp;amp; D of 1FJ1) and greenish regions indicate light chains (chains A &amp;amp; C of 1FJ1)&amp;lt;/li&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospafab-ospa/3&#039; target=&amp;quot;complex&amp;quot;&amp;gt;OspA&amp;lt;/scene&amp;gt; proteins in complex with the LA-2 Fab antibody (chains E &amp;amp; F of 1FJ1)&amp;lt;/li&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospafab-interaction/3&#039; target=&amp;quot;complex&amp;quot;&amp;gt;Closeup&amp;lt;/scene&amp;gt; of the OspA antigen : LA-2 Fab antibody interactions&amp;lt;/li&amp;gt;&lt;br /&gt;
&amp;lt;/ul&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;Structure of OspA&amp;lt;/h2&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;Structure load=&amp;quot;1fj1&amp;quot; size=&amp;quot;350&amp;quot; frame=&amp;quot;true&amp;quot; align=&amp;quot;right&amp;quot; name=&amp;quot;OspA-manip&amp;quot; caption=&amp;quot;Outer surface protein A (OspA) ([[1fj1|1FJ1]], chain F)&amp;quot; scene=&amp;quot;Studio:G2SecL03/Ospa_3loopscartoon/3&amp;quot;/&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
OspA is made up of 273 residues over 21 anti-parallel β-sheets and a single α-helix. It&#039;s folded conformation is divided into three main sections: a N-terminus &amp;quot;sandwich,&amp;quot; a central region comprising of several β-sheets and a C-terminus &amp;quot;barrel&amp;quot; domain.&amp;lt;ref name=&amp;quot;ding&amp;quot;&amp;gt;PMID: 11183781&amp;lt;/ref&amp;gt; The folded regions at its ends are connected by a single β-sheet layer in the middle, giving the protein the unique shape of a dumbell.&amp;lt;ref name=&amp;quot;makabe&amp;quot;&amp;gt;PMID: 16823038&amp;lt;/ref&amp;gt; &lt;br /&gt;
&lt;br /&gt;
There are &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops/4&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;three loops&amp;lt;/scene&amp;gt; at the C-terminus of OspA that are important in binding with the LA-2 Fab antibody, whose interactions provide great insight into vaccine research and effectiveness. These three loops are linearly arranged and form protruding ridge at the C-terminus of OspA. Within these loops, there are &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-nor/3&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;three residues&amp;lt;/scene&amp;gt; &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-r/2&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;(show residue R-groups)&amp;lt;/scene&amp;gt; where there are distinct variations between the different strains of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; and serve as potential targets for the creation of a broader vaccine.&amp;lt;ref name=&amp;quot;ding&amp;quot;&amp;gt;PMID: 11183781&amp;lt;/ref&amp;gt; &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops3res/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;(display both the three loops and three residues together)&amp;lt;/scene&amp;gt; &lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-loop1/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Loop 1&amp;lt;/scene&amp;gt;, (residues 203-220), is important in showing variation amongst the different strains of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; as well as being optimally conformed for binding without steric hindrance. &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-loop2/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Loop 2&amp;lt;/scene&amp;gt; (residues 224-233) and &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-loop3/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Loop 3&amp;lt;/scene&amp;gt; (residues 246-257) are more strongly conserved than Loop 1 but also help to show some variation amongst strains. The LA-2 Fab antibody readily recognizes OspA from &amp;lt;i&amp;gt;B. burgdorferi&amp;lt;/i&amp;gt;, but does not recognize that from &amp;lt;i&amp;gt;B. afzelii&amp;lt;/i&amp;gt; or &amp;lt;i&amp;gt;B. garinii&amp;lt;/i&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
Between Bb. and Ba. genetic sequences are generally invariant, but two residues change between the species, ALA 208 &amp;lt;&amp;lt;ALA 208&amp;gt;&amp;gt; in Bb. is GLN in Ba., and ASN 251 &amp;lt;&amp;lt;ASN 251&amp;gt;&amp;gt; in Bb. is ALA in Ba.. Bg. has more variation and in addition to the previous two differences, has at least one more difference, where ALA 215 &amp;lt;&amp;lt;ALA 215&amp;gt;&amp;gt; in Bb. is LYS, Bg. sometimes also has a deletion at Bb.’s ALA 208. LA-2 and OspA of Bb. form a tight interface when binding, and the longer GLN sidechain found in Ba. and Bg. is more difficult to accommodate, causing less binding. A chimera that was weakly recognized by LA-2 was made with parts of loop 1 from Bb., and loops 2 and 3 from Bg. 5 Recently, a different kind of chimera has been made which combined the proximal region of Bb. and distal region of Ba., and was able to successfully protect mice from both species. 8&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h3&amp;gt;List of Available Scenes for OspA&amp;lt;/h3&amp;gt;&lt;br /&gt;
&amp;lt;ul&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa_3loopscartoon/3&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Reset model&amp;lt;/scene&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops/4&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Three loops&amp;lt;/scene&amp;gt; in C-terminus (close up)&lt;br /&gt;
         &amp;lt;ul&amp;gt;&lt;br /&gt;
           &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-loop1/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Loop 1&amp;lt;/scene&amp;gt; (residues 203-220)&amp;lt;/li&amp;gt;&lt;br /&gt;
           &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-loop2/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Loop 2&amp;lt;/scene&amp;gt; (residues 224-233)&amp;lt;/li&amp;gt;&lt;br /&gt;
           &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-loop3/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Loop 3&amp;lt;/scene&amp;gt; (residues 246-257)&amp;lt;/li&amp;gt;&lt;br /&gt;
         &amp;lt;/ul&amp;gt;&lt;br /&gt;
     &amp;lt;/li&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-nor/3&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Three residues&amp;lt;/scene&amp;gt; in C-terminus (Ala208, Ala215 and Asn251 in &amp;lt;i&amp;gt;B. burgdorferi&amp;lt;/i&amp;gt;; also hides R-groups)&lt;br /&gt;
         &amp;lt;ul&amp;gt;&lt;br /&gt;
           &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-r/2&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Display R-groups&amp;lt;/scene&amp;gt; of Ala208, Ala215 and Asn251&amp;lt;/li&amp;gt;&lt;br /&gt;
         &amp;lt;/ul&amp;gt;&lt;br /&gt;
     &amp;lt;/li&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops3res/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Three loops and all three residues (with R-groups included)&amp;lt;/scene&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
&amp;lt;/ul&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;References&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;references /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;External Links&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;ul&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://www.who.int/ith/diseases/lyme/en/index.html World Health Organization: Lyme Disease]&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://www.ncbi.nlm.nih.gov/pubmedhealth/PMH0002296/ PubMed Health: Lyme Disease]&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://www.aldf.com/ American Lyme Disease Foundation]&lt;br /&gt;
&amp;lt;/ul&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;Proteopedia Page Contributors and Editors&amp;lt;/h2&amp;gt;&lt;br /&gt;
[http://proteopedia.org/wiki/index.php/User:Kimberly_Slade Kimberly Slade], [http://proteopedia.org/wiki/index.php/User:Cara_Lin Cara Lin], [http://proteopedia.org/wiki/index.php/User:Andrea_Mullen Andrea Mullen], [http://proteopedia.org/wiki/index.php/User:Jenny_Kim_Kim Jenny Kim Kim]&lt;br /&gt;
&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&lt;/div&gt;</summary>
		<author><name>Jenny Kim Kim</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=User:Marvin_O%27Neal/OspA&amp;diff=1388223</id>
		<title>User:Marvin O&#039;Neal/OspA</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=User:Marvin_O%27Neal/OspA&amp;diff=1388223"/>
		<updated>2012-05-04T20:32:28Z</updated>

		<summary type="html">&lt;p&gt;Jenny Kim Kim: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;Structure load=&amp;quot;1fj1&amp;quot; size=&amp;quot;350&amp;quot; frame=&amp;quot;true&amp;quot; align=&amp;quot;right&amp;quot; name=&amp;quot;OspA-secondary&amp;quot; caption=&amp;quot;Outer surface protein A (OspA) ([[1fj1|1FJ1]], chain F) showing secondary structures.&amp;quot; scene=&amp;quot;Studio:G2SecL03/Ospa_default/5&amp;quot;/&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
&amp;lt;b&amp;gt;Outer Surface Protein A (OspA)&amp;lt;/b&amp;gt; is a major lipoprotein found on the surface of [http://en.wikipedia.org/wiki/Spirochaete spirochetes] from the genus [http://en.wikipedia.org/wiki/Borrelia &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt;] and is comprised of 21 anti-parallel β-sheets and a single α-helix. OspA&#039;s expression is regulated at different points in time, from being downregulated during the tick&#039;s feeding process on its host to being upregulated in the host&#039;s cerebrospinal fluid (CSF) to induce inflammatory response, resulting in acute Lyme [http://en.wikipedia.org/wiki/Neuroborreliosis neuroborreliosis]. OspA has also been used as a vector in working towards the development of a vaccine for [http://en.wikipedia.org/wiki/Lyme_disease Lyme disease].&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;Introduction&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Lyme disease is caused by the spirochete &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; and spread via hard-bodied ticks belonging to the family [http://en.wikipedia.org/wiki/Ixodidae &amp;lt;i&amp;gt;Ixodidae&amp;lt;/i&amp;gt;]. The &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; spirochetes are motile, helical organisms have several lipoproteins exposed on the surfaces of their membranes that invoke a response from host immune systems. The predominant group of these is classified as the outer surface proteins (Osps). Both the pathogenesis of Lyme disease as well as the host&#039;s immune response stem from the effects of the spirochete&#039;s presence and involvement in the system.&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
The major strain of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; in the United States is [http://en.wikipedia.org/wiki/Borrelia_burgdorferi &amp;lt;i&amp;gt;Borrelia burgdorferi&amp;lt;/i&amp;gt;] &amp;lt;i&amp;gt;sensu stricto (Bb.)&amp;lt;/i&amp;gt;, with 20-100 cases of Lyme disease being reported per 100,000 people. In Europe, Lyme disease cases are more prevalent, with 100-130 diagnoses per 100,000 people, but are caused by the spirochetes [http://en.wikipedia.org/wiki/Borrelia_afzelii &amp;lt;i&amp;gt;Borrelia afzelii (Ba.)&amp;lt;/i&amp;gt;] and [http://en.wikipedia.org/wiki/Borrelia_garinii &amp;lt;i&amp;gt;Borrelia garinii (Bg.)&amp;lt;/i&amp;gt;] in addition to &amp;lt;i&amp;gt;B. burgdorferi&amp;lt;/i&amp;gt;.&amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;ding&amp;quot;&amp;gt;PMID: 11183781&amp;lt;/ref&amp;gt; &lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Lyme disease is a debilitating condition that begins with a characteristic bullseye rash known as an [http://en.wikipedia.org/wiki/Erythema_chronicum_migrans erythema migrans (EM)] as well as the development of lesions on other parts of the body, not just at the site of the tick&#039;s attachment to its host. Secondary stage symptoms include affecting the heart, joints, and both the central and peripheral nervous systems.  OspA is used in adhering to the tick&#039;s gut by binding with the tick receptor for OspA (TROSPA), a receptor necessary for the colonization of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; inside the tick. High levels of both OspA and TROSPA are found prior to feeding, but are downregulated once the feeding process begins in order to initiate transmission into the host.&amp;lt;ref name=&amp;quot;pal&amp;quot;&amp;gt;PMID: 15537536&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
While feeding, OspA is downregulated in order to evade an immune response from the incoming host blood into the gut, releasing the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; from the gut wall and migrating into the tick&#039;s salivary glands, thereby allowing it to enter the host through the bite. This is evidenced by the fact that patients with Lyme disease have been found to not possess OspA antibodies in the early stages of the disease.&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt; OspA is the protein most related to acute Lyme neuroborreliosis (LNB), the neurological manifestations of Lyme disease.  &lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;OspA&#039;s Role in Invasion&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Once inside the host, the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; has a great number of mechanisms available to actively suppress the host&#039;s immune system response and neutralize its effector mechanisms, such as the expression of another outer surface protein, OspC, which prevents susceptibility to the host&#039;s [http://en.wikipedia.org/wiki/Innate_immune_system innate immunity] and [http://en.wikipedia.org/wiki/Complement_system complement systems]. Additionally, &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; is capable of suppressing many of its surface proteins to reduce its detectability, but can also utilize protective means by temporarily expressing them when needed.&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h3&amp;gt;Acute Lyme Neuroborreliosis (LNB)&amp;lt;/h3&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Acute Lyme Neuroborreliosis (LNB) is part of the second stage of Lyme disease in which the spirochete invades the peripheral and central nervous systems (CNS). Symptoms of LNB include: meningoradiculitis with inflammation of the nerve roots and [http://en.wikipedia.org/wiki/Radicular_pain radiculitis] (Bannwarth’s syndrome), lymphocytic meningitis, and cranial and [http://www.ncbi.nlm.nih.gov/pubmedhealth/PMH0001619/ peripheral neuritis]. In Europe, the strain predominantly found in the CSF of patients with Bannwarth&#039;s syndrome is &amp;lt;i&amp;gt;B. garinii&amp;lt;/i&amp;gt;. However, in the United States, Bannwarth&#039;s syndrome is rare and the most common manifestations of Lyme neuroborreliosis is [http://en.wikipedia.org/wiki/Meningitis meningitis], caused by &amp;lt;i&amp;gt;B. burgdorferi&amp;lt;/i&amp;gt;. The presence of OspA in the cerebrospinal fluid (CSF) is responsible for this complex inflammatory response in the brain that leads to the neuroborreliosis.&amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h3&amp;gt;Evasion and the Extracellular Matrix&amp;lt;/h3&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
The &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; are able to hide in the [http://en.wikipedia.org/wiki/Extracellular_matrix extracellular matrix], allowing it to survive by avoiding [http://en.wikipedia.org/wiki/Leukocytes leukocytes] circulating in the bloodstream. OspA can rapidly bind to plasminogen, which becomes [http://en.wikipedia.org/wiki/Plasmin plasmin] once activated, and degrades the extracellular matrix. By binding to plasminogen, &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; could be exploiting its function and utilizing it to invade the extracellular matrix. However, due to the fact that OspA is downregulated during feeding, and stays unexpressed, a different mechanism may be used instead. Additionally, &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; induces the local upregulation of matrix metalloproteinase-9, causing the digestion of the surrounding extracellular matrix. &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; can also bind to several proteins in the extracellular matrix, such as [http://en.wikipedia.org/wiki/Fibronectin fibronectin], [http://en.wikipedia.org/wiki/Integrins integrins] or [http://en.wikipedia.org/wiki/Decorin decorin], which can aid in the spread and survival of the spirochetes in these tissues.&amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h3&amp;gt;Migration Across the Blood-Brain Barrier&amp;lt;/h3&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
It is not fully understood how &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; get past the [http://en.wikipedia.org/wiki/Blood-brain_barrier blood-brain barrier], though some researchers suggest a paracellular route, which involves a process using transient tether-type associations, short-term dragging interactions, and stationary adhesion. There is evidence that &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; utilizes OspA in the transient tethering stage. The blood-brain barrier is composed of brain microvascular endothelial cells, astrocytes, a basement membrane, pericytes, and neurons. OspA is a major adherent molecule to brain microvascular cells by binding to the CD40 receptors outside, which results in events that are typically seen when leukocytes cross the blood brain barrier. &lt;br /&gt;
&lt;br /&gt;
Activation of CD40 receptors leads to the production of proinflammatory cytokines and enhanced expression of ICAM-1, E-selectin and VCAM-1, resulting in increased cell binding, and the formation of fenestrations due to increased vascular endothelial growth factor, and vascular permeability factor. OspA might be mimicking leukocytes in order to cross the blood-brain barrier.  However not all strains of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; can utilize OspA to do this, OspA only contributes about 70% to adherence, and  other &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; proteins are also needed in this process. It has also been seen that OspA mediates the adhesion of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; to murine neural and glial cell lines. &amp;lt;ref name=&amp;quot;pulzova&amp;quot;&amp;gt;PMID: 22355605&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h3&amp;gt;Role in Inflammation&amp;lt;/h3&amp;gt;&lt;br /&gt;
&lt;br /&gt;
[[Image:G2L03-OspA-mechanism.jpg|thumb|300px|Mechanism of the host inflammatory response to OspA]]&lt;br /&gt;
&lt;br /&gt;
There are six steps involved in the host&#039;s inflammatory response to OspA: &amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt;&amp;lt;br&amp;gt;&lt;br /&gt;
&amp;lt;ol&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;When the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; enter the host’s CNS they encounter several different types of immune cells such as [http://en.wikipedia.org/wiki/Monocyte monocytes], [http://en.wikipedia.org/wiki/Macrophages macrophages], and [http://en.wikipedia.org/wiki/Dendritic_cells dendritic cells]. While in the CSF, outer surface protein A (OspA) is upregulated and it’s increased expression promotes recognition by a specific receptor on a monocyte.&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;The OspA-bound monocyte then releases proinflammatory [http://en.wikipedia.org/wiki/Cytokine cytokines] (i.e. [http://en.wikipedia.org/wiki/Interferon interferon]), as well as [http://en.wikipedia.org/wiki/Chemokine chemokines], such as [http://en.wikipedia.org/wiki/CXCL13 CXCL13]. In patients with LNB, there is an observed increase in the levels of these cytokines and chemokines in their CSF. The production of chemokines leads to the recruitment of other immune cells to the site of infection.&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://en.wikipedia.org/wiki/B_lymphocyte B-lymphocytes] respond to the new concentration gradient of CXCL13 between the blood and CSF and migrate into the CSF.&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;B-lymphocytes undergo [http://en.wikipedia.org/wiki/Receptor-mediated_endocytosis receptor-mediated endocytosis], consuming the OspA antigens present in the CSF, thereby triggering its activation. The B-lymphocytes then are able to differentiate and mature into  [http://en.wikipedia.org/wiki/Plasma_cells plasma cells].&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;The plasma cells create large quantities of anti-OspA antibodies specific to this strain of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; and release them into the CSF.&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;The anti-OspA antibodies will then bind to the OspA on the spirochete’s membrane, thus killing the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt;.&amp;lt;/li&amp;gt;&lt;br /&gt;
&amp;lt;/ol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
This process is two-sided in the sense that the OspA aids in the pathogenesis of new symptoms (neuroborreliosis) through the chemokine’s actions, as well as initiating the signaling cascade to destroy itself.&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;OspA Vaccination&amp;lt;/h2&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;Structure load=&amp;quot;1fj1&amp;quot; size=&amp;quot;350&amp;quot; frame=&amp;quot;true&amp;quot; align=&amp;quot;right&amp;quot; name=&amp;quot;complex&amp;quot; caption=&amp;quot;Outer surface protein A (OspA) in complex with the LA-2 Fab antibody ([[1fj1|1FJ1]]).&amp;quot; scene=&amp;quot;Studio:G2SecL03/Ospafab-orig/3&amp;quot;/&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Risk of developing Lyme disease can be mitigated by staying clear of areas with populations of ticks, wearing proper attire to minimize easily bitten areas of the body, and using insect repellents containing [http://en.wikipedia.org/wiki/DEET DEET] (N,N-diethy-m-toluamide). However, another effective means for prevention could be possible by using an outer surface protein from &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; in the creation of a vaccine.&amp;lt;ref name=&amp;quot;nigrovic&amp;quot;&amp;gt;PMID: 16893489&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
The membrane composition of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; is abundant in both OspA and OspB, and the two proteins share a 53% similarity in their primary sequences. Both OspA and OspB are expressed in the tick&#039;s gut and downregulated during feeding and aid in its survivability; however, OspA is overall less varied and reactive than OspB, which has greater variability.&amp;lt;ref name=&amp;quot;becker&amp;quot;&amp;gt;PMID: 15713683&amp;lt;/ref&amp;gt; The relatively conserved sequence of OspA thus lends itself better to study and application toward the development of a vaccine for a broader range of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; strains in the treatment of Lyme disease than that of OspB. The first vaccine used a purified recombinant form of OspA and functioned in blocking transmission of the spirochetes expressing OspA from tick to host during feeding, killing them while still attached to the tick&#039;s gut.&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;battisti&amp;quot;&amp;gt;PMID: 18779341&amp;lt;/ref&amp;gt; The vaccine, Lymerix, had shown 76% and 92% effectiveness in separate clinical trials in which patients were treated for two years following a three-dose schedule. However, the vaccination was suspended from use in 2002 when opponents claimed the [http://en.wikipedia.org/wiki/Immunoglobulin_G IgG antibodies] for OspA were associated with the onset of severe chronic arthritis, as well as other side effects affecting immunity.&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;plotkin&amp;quot;&amp;gt;PMID: 21217175&amp;lt;/ref&amp;gt;  This fact, in conjunction with the desire for a more widespread vaccine treating multiple strains of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt;, has spurred research towards a new vaccine.&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
To address the concerns of vaccine with broader protection, creation of a chimera, mixing the OspA of different strains of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; would be ideal. Study of the epitope of &amp;lt;scene name=&#039;Studio:G2SecL03/Ospafab-ospa/3&#039; target=&amp;quot;complex&amp;quot;&amp;gt;OspA&amp;lt;/scene&amp;gt; and its &amp;lt;scene name=&#039;Studio:G2SecL03/Ospafab-interaction/3&#039; target=&amp;quot;complex&amp;quot;&amp;gt;interactions&amp;lt;/scene&amp;gt; with the murine monoclonal antibody &amp;lt;scene name=&#039;Studio:G2SecL03/Ospafab-fab/3&#039; target=&amp;quot;complex&amp;quot;&amp;gt;LA-2&amp;lt;/scene&amp;gt; have proved useful in determining effectiveness of a given vaccine trial as high levels of antibodies in test sera compete against LA-2 for binding with OspA. LA-2 makes direct contact with three exposed loops of the C-terminus of OspA. The recognition of OspA by LA-2 requires an induced fit mechanism where these three loops undergo conformational changes to optimize their interaction in the complex. &amp;lt;ref name=&amp;quot;ding&amp;quot;&amp;gt;PMID: 11183781&amp;lt;/ref&amp;gt; &lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h3&amp;gt;List of Available Scenes for the OspA:LA-2 Complex&amp;lt;/h3&amp;gt;&lt;br /&gt;
&amp;lt;ul&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospafab-orig/3&#039; target=&amp;quot;complex&amp;quot;&amp;gt;Reset model&amp;lt;/scene&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospafab-fab/3&#039; target=&amp;quot;complex&amp;quot;&amp;gt;LA-2&amp;lt;/scene&amp;gt; Fab antibody (Bluish regions indicate heavy chains (chains B &amp;amp; D of 1FJ1) and greenish regions indicate light chains (chains A &amp;amp; C of 1FJ1)&amp;lt;/li&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospafab-ospa/3&#039; target=&amp;quot;complex&amp;quot;&amp;gt;OspA&amp;lt;/scene&amp;gt; proteins in complex with the LA-2 Fab antibody&amp;lt;/li&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospafab-interaction/3&#039; target=&amp;quot;complex&amp;quot;&amp;gt;Closeup&amp;lt;/scene&amp;gt; of the antigen:antibody interactions&amp;lt;/li&amp;gt;&lt;br /&gt;
&amp;lt;/ul&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;Structure of OspA&amp;lt;/h2&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;Structure load=&amp;quot;1fj1&amp;quot; size=&amp;quot;350&amp;quot; frame=&amp;quot;true&amp;quot; align=&amp;quot;right&amp;quot; name=&amp;quot;OspA-manip&amp;quot; caption=&amp;quot;Outer surface protein A (OspA) ([[1fj1|1FJ1]], chain F)&amp;quot; scene=&amp;quot;Studio:G2SecL03/Ospa_3loopscartoon/3&amp;quot;/&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
OspA is made up of 273 residues over 21 anti-parallel β-sheets and a single α-helix. It&#039;s folded conformation is divided into three main sections: a N-terminus &amp;quot;sandwich,&amp;quot; a central region comprising of several β-sheets and a C-terminus &amp;quot;barrel&amp;quot; domain.&amp;lt;ref name=&amp;quot;ding&amp;quot;&amp;gt;PMID: 11183781&amp;lt;/ref&amp;gt; The folded regions at its ends are connected by a single β-sheet layer in the middle, giving the protein the unique shape of a dumbell.&amp;lt;ref name=&amp;quot;makabe&amp;quot;&amp;gt;PMID: 16823038&amp;lt;/ref&amp;gt; &lt;br /&gt;
&lt;br /&gt;
There are &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops/4&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;three loops&amp;lt;/scene&amp;gt; at the C-terminus of OspA that are important in binding with the LA-2 Fab antibody, whose interactions provide great insight into vaccine research and effectiveness. Within these loops, there are &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-nor/3&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;three residues&amp;lt;/scene&amp;gt; &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-r/2&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;(show residue R-groups)&amp;lt;/scene&amp;gt; where there are distinct variations between the different strains of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; and serve as potential targets for the creation of a broader vaccine.&amp;lt;ref name=&amp;quot;ding&amp;quot;&amp;gt;PMID: 11183781&amp;lt;/ref&amp;gt; &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops3res/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;(display both the three loops and three residues together)&amp;lt;/scene&amp;gt; &lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-loop1/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Loop 1&amp;lt;/scene&amp;gt;, (residues 203-220), is important in showing variation amongst the different strains of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; as well as being optimally conformed for binding without steric hindrance. &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-loop2/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Loop 2&amp;lt;/scene&amp;gt; (residues 224-233) and &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-loop3/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Loop 3&amp;lt;/scene&amp;gt; (residues 246-257) are more strongly conserved than Loop 1 but also help to show some variation amongst strains. The LA-2 Fab antibody readily recognizes OspA from &amp;lt;i&amp;gt;B. burgdorferi&amp;lt;/i&amp;gt;, but does not recognize that from &amp;lt;i&amp;gt;B. afzelii&amp;lt;/i&amp;gt; or &amp;lt;i&amp;gt;B. garinii&amp;lt;/i&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
Between Bb. and Ba. genetic sequences are generally invariant, but two residues change between the species, ALA 208 &amp;lt;&amp;lt;ALA 208&amp;gt;&amp;gt; in Bb. is GLN in Ba., and ASN 251 &amp;lt;&amp;lt;ASN 251&amp;gt;&amp;gt; in Bb. is ALA in Ba.. Bg. has more variation and in addition to the previous two differences, has at least one more difference, where ALA 215 &amp;lt;&amp;lt;ALA 215&amp;gt;&amp;gt; in Bb. is LYS, Bg. sometimes also has a deletion at Bb.’s ALA 208. LA-2 and OspA of Bb. form a tight interface when binding, and the longer GLN sidechain found in Ba. and Bg. is more difficult to accommodate, causing less binding. A chimera that was weakly recognized by LA-2 was made with parts of loop 1 from Bb., and loops 2 and 3 from Bg. 5 Recently, a different kind of chimera has been made which combined the proximal region of Bb. and distal region of Ba., and was able to successfully protect mice from both species. 8&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h3&amp;gt;List of Available Scenes for OspA&amp;lt;/h3&amp;gt;&lt;br /&gt;
&amp;lt;ul&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa_3loopscartoon/3&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Reset model&amp;lt;/scene&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops/4&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Three loops&amp;lt;/scene&amp;gt; in C-terminus (close up)&lt;br /&gt;
         &amp;lt;ul&amp;gt;&lt;br /&gt;
           &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-loop1/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Loop 1&amp;lt;/scene&amp;gt; (residues 203-220)&amp;lt;/li&amp;gt;&lt;br /&gt;
           &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-loop2/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Loop 2&amp;lt;/scene&amp;gt; (residues 224-233)&amp;lt;/li&amp;gt;&lt;br /&gt;
           &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-loop3/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Loop 3&amp;lt;/scene&amp;gt; (residues 246-257)&amp;lt;/li&amp;gt;&lt;br /&gt;
         &amp;lt;/ul&amp;gt;&lt;br /&gt;
     &amp;lt;/li&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-nor/3&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Three residues&amp;lt;/scene&amp;gt; in C-terminus (Ala208, Ala215 and Asn251 in &amp;lt;i&amp;gt;B. burgdorferi&amp;lt;/i&amp;gt;; also hides R-groups)&lt;br /&gt;
         &amp;lt;ul&amp;gt;&lt;br /&gt;
           &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-r/2&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Display R-groups&amp;lt;/scene&amp;gt; of Ala208, Ala215 and Asn251&amp;lt;/li&amp;gt;&lt;br /&gt;
         &amp;lt;/ul&amp;gt;&lt;br /&gt;
     &amp;lt;/li&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops3res/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Three loops and all three residues (with R-groups included)&amp;lt;/scene&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
&amp;lt;/ul&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;References&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;references /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;External Links&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;ul&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://www.who.int/ith/diseases/lyme/en/index.html World Health Organization: Lyme Disease]&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://www.ncbi.nlm.nih.gov/pubmedhealth/PMH0002296/ PubMed Health: Lyme Disease]&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://www.aldf.com/ American Lyme Disease Foundation]&lt;br /&gt;
&amp;lt;/ul&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;Proteopedia Page Contributors and Editors&amp;lt;/h2&amp;gt;&lt;br /&gt;
[http://proteopedia.org/wiki/index.php/User:Kimberly_Slade Kimberly Slade], [http://proteopedia.org/wiki/index.php/User:Cara_Lin Cara Lin], [http://proteopedia.org/wiki/index.php/User:Andrea_Mullen Andrea Mullen], [http://proteopedia.org/wiki/index.php/User:Jenny_Kim_Kim Jenny Kim Kim]&lt;br /&gt;
&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&lt;/div&gt;</summary>
		<author><name>Jenny Kim Kim</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=User:Marvin_O%27Neal/OspA&amp;diff=1388184</id>
		<title>User:Marvin O&#039;Neal/OspA</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=User:Marvin_O%27Neal/OspA&amp;diff=1388184"/>
		<updated>2012-05-04T19:52:39Z</updated>

		<summary type="html">&lt;p&gt;Jenny Kim Kim: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;Structure load=&amp;quot;1fj1&amp;quot; size=&amp;quot;350&amp;quot; frame=&amp;quot;true&amp;quot; align=&amp;quot;right&amp;quot; name=&amp;quot;OspA-secondary&amp;quot; caption=&amp;quot;Outer surface protein A (OspA) ([[1fj1|1FJ1]], chain F) showing secondary structures.&amp;quot; scene=&amp;quot;Studio:G2SecL03/Ospa_default/5&amp;quot;/&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
&amp;lt;b&amp;gt;Outer Surface Protein A (OspA)&amp;lt;/b&amp;gt; is a major lipoprotein found on the surface of [http://en.wikipedia.org/wiki/Spirochaete spirochetes] from the genus [http://en.wikipedia.org/wiki/Borrelia &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt;] and is comprised of 21 anti-parallel β-sheets and a single α-helix. OspA&#039;s expression is regulated at different points in time, from being downregulated during the tick&#039;s feeding process on its host to being upregulated in the host&#039;s cerebrospinal fluid (CSF) to induce inflammatory response, resulting in acute Lyme [http://en.wikipedia.org/wiki/Neuroborreliosis neuroborreliosis]. OspA has also been used as a vector in working towards the development of a vaccine for [http://en.wikipedia.org/wiki/Lyme_disease Lyme disease].&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;Introduction&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Lyme disease is caused by the spirochete &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; and spread via hard-bodied ticks belonging to the family [http://en.wikipedia.org/wiki/Ixodidae &amp;lt;i&amp;gt;Ixodidae&amp;lt;/i&amp;gt;]. The &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; spirochetes are motile, helical organisms have several lipoproteins exposed on the surfaces of their membranes that invoke a response from host immune systems. The predominant group of these is classified as the outer surface proteins (Osps). Both the pathogenesis of Lyme disease as well as the host&#039;s immune response stem from the effects of the spirochete&#039;s presence and involvement in the system.&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
The major strain of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; in the United States is [http://en.wikipedia.org/wiki/Borrelia_burgdorferi &amp;lt;i&amp;gt;Borrelia burgdorferi&amp;lt;/i&amp;gt;] &amp;lt;i&amp;gt;sensu stricto (Bb.)&amp;lt;/i&amp;gt;, with 20-100 cases of Lyme disease being reported per 100,000 people. In Europe, Lyme disease cases are more prevalent, with 100-130 diagnoses per 100,000 people, but are caused by the spirochetes [http://en.wikipedia.org/wiki/Borrelia_afzelii &amp;lt;i&amp;gt;Borrelia afzelii (Ba.)&amp;lt;/i&amp;gt;] and [http://en.wikipedia.org/wiki/Borrelia_garinii &amp;lt;i&amp;gt;Borrelia garinii (Bg.)&amp;lt;/i&amp;gt;] in addition to &amp;lt;i&amp;gt;B. burgdorferi&amp;lt;/i&amp;gt;.&amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;ding&amp;quot;&amp;gt;PMID: 11183781&amp;lt;/ref&amp;gt; &lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Lyme disease is a debilitating condition that begins with a characteristic bullseye rash known as an [http://en.wikipedia.org/wiki/Erythema_chronicum_migrans erythema migrans (EM)] as well as the development of lesions on other parts of the body, not just at the site of the tick&#039;s attachment to its host. Secondary stage symptoms include affecting the heart, joints, and both the central and peripheral nervous systems.  OspA is used in adhering to the tick&#039;s gut by binding with the tick receptor for OspA (TROSPA), a receptor necessary for the colonization of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; inside the tick. High levels of both OspA and TROSPA are found prior to feeding, but are downregulated once the feeding process begins in order to initiate transmission into the host.&amp;lt;ref name=&amp;quot;pal&amp;quot;&amp;gt;PMID: 15537536&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
While feeding, OspA is downregulated in order to evade an immune response from the incoming host blood into the gut, releasing the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; from the gut wall and migrating into the tick&#039;s salivary glands, thereby allowing it to enter the host through the bite. This is evidenced by the fact that patients with Lyme disease have been found to not possess OspA antibodies in the early stages of the disease.&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt; OspA is the protein most related to acute Lyme neuroborreliosis (LNB), the neurological manifestations of Lyme disease.  &lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;OspA&#039;s Role in Invasion&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Once inside the host, the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; has a great number of mechanisms available to actively suppress the host&#039;s immune system response and neutralize its effector mechanisms, such as the expression of another outer surface protein, OspC, which prevents susceptibility to the host&#039;s [http://en.wikipedia.org/wiki/Innate_immune_system innate immunity] and [http://en.wikipedia.org/wiki/Complement_system complement systems]. Additionally, &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; is capable of suppressing many of its surface proteins to reduce its detectability, but can also utilize protective means by temporarily expressing them when needed.&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h3&amp;gt;Acute Lyme Neuroborreliosis (LNB)&amp;lt;/h3&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Acute Lyme Neuroborreliosis (LNB) is part of the second stage of Lyme disease in which the spirochete invades the peripheral and central nervous systems (CNS). Symptoms of LNB include: meningoradiculitis with inflammation of the nerve roots and [http://en.wikipedia.org/wiki/Radicular_pain radiculitis] (Bannwarth’s syndrome), lymphocytic meningitis, and cranial and [http://www.ncbi.nlm.nih.gov/pubmedhealth/PMH0001619/ peripheral neuritis]. In Europe, the strain predominantly found in the CSF of patients with Bannwarth&#039;s syndrome is &amp;lt;i&amp;gt;B. garinii&amp;lt;/i&amp;gt;. However, in the United States, Bannwarth&#039;s syndrome is rare and the most common manifestations of Lyme neuroborreliosis is [http://en.wikipedia.org/wiki/Meningitis meningitis], caused by &amp;lt;i&amp;gt;B. burgdorferi&amp;lt;/i&amp;gt;. The presence of OspA in the cerebrospinal fluid (CSF) is responsible for this complex inflammatory response in the brain that leads to the neuroborreliosis.&amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h3&amp;gt;Evasion and the Extracellular Matrix&amp;lt;/h3&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
The &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; are able to hide in the [http://en.wikipedia.org/wiki/Extracellular_matrix extracellular matrix], allowing it to survive by avoiding [http://en.wikipedia.org/wiki/Leukocytes leukocytes] circulating in the bloodstream. OspA can rapidly bind to plasminogen, which becomes [http://en.wikipedia.org/wiki/Plasmin plasmin] once activated, and degrades the extracellular matrix. By binding to plasminogen, &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; could be exploiting its function and utilizing it to invade the extracellular matrix. However, due to the fact that OspA is downregulated during feeding, and stays unexpressed, a different mechanism may be used instead. Additionally, &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; induces the local upregulation of matrix metalloproteinase-9, causing the digestion of the surrounding extracellular matrix. &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; can also bind to several proteins in the extracellular matrix, such as [http://en.wikipedia.org/wiki/Fibronectin fibronectin], [http://en.wikipedia.org/wiki/Integrins integrins] or [http://en.wikipedia.org/wiki/Decorin decorin], which can aid in the spread and survival of the spirochetes in these tissues.&amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h3&amp;gt;Migration Across the Blood-Brain Barrier&amp;lt;/h3&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
It is not fully understood how &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; get past the [http://en.wikipedia.org/wiki/Blood-brain_barrier blood-brain barrier], though some researchers suggest a paracellular route, which involves a process using transient tether-type associations, short-term dragging interactions, and stationary adhesion. There is evidence that &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; utilizes OspA in the transient tethering stage. The blood-brain barrier is composed of brain microvascular endothelial cells, astrocytes, a basement membrane, pericytes, and neurons. OspA is a major adherent molecule to brain microvascular cells by binding to the CD40 receptors outside, which results in events that are typically seen when leukocytes cross the blood brain barrier. &lt;br /&gt;
&lt;br /&gt;
Activation of CD40 receptors leads to the production of proinflammatory cytokines and enhanced expression of ICAM-1, E-selectin and VCAM-1, resulting in increased cell binding, and the formation of fenestrations due to increased vascular endothelial growth factor, and vascular permeability factor. OspA might be mimicking leukocytes in order to cross the blood brain barrier.  However not all strains of borrelia can utilize OspA to do this, OspA only contributes about 70% to adherence, and  other &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; proteins are also needed in this process. It has also been seen that OspA mediates the adhesion of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; to murine neural and glial cell lines. &amp;lt;ref name=&amp;quot;pulzova&amp;quot;&amp;gt;PMID: 22355605&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h3&amp;gt;Role in Inflammation&amp;lt;/h3&amp;gt;&lt;br /&gt;
&lt;br /&gt;
[[Image:G2L03-OspA-mechanism.jpg|thumb|300px|Mechanism of the host inflammatory response to OspA]]&lt;br /&gt;
&lt;br /&gt;
There are six steps involved in the host&#039;s inflammatory response to OspA: &amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt;&amp;lt;br&amp;gt;&lt;br /&gt;
&amp;lt;ol&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;When the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; enter the host’s CNS they encounter several different types of immune cells such as [http://en.wikipedia.org/wiki/Monocyte monocytes], [http://en.wikipedia.org/wiki/Macrophages macrophages], and [http://en.wikipedia.org/wiki/Dendritic_cells dendritic cells]. While in the CSF, outer surface protein A (OspA) is upregulated and it’s increased expression promotes recognition by a specific receptor on a monocyte.&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;The OspA-bound monocyte then releases proinflammatory [http://en.wikipedia.org/wiki/Cytokine cytokines] (i.e. [http://en.wikipedia.org/wiki/Interferon interferon]), as well as [http://en.wikipedia.org/wiki/Chemokine chemokines], such as [http://en.wikipedia.org/wiki/CXCL13 CXCL13]. In patients with LNB, there is an observed increase in the levels of these cytokines and chemokines in their CSF. The production of chemokines leads to the recruitment of other immune cells to the site of infection.&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://en.wikipedia.org/wiki/B_lymphocyte B-lymphocytes] respond to the new concentration gradient of CXCL13 between the blood and CSF and migrate into the CSF.&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;B-lymphocytes undergo [http://en.wikipedia.org/wiki/Receptor-mediated_endocytosis receptor-mediated endocytosis], consuming the OspA antigens present in the CSF, thereby triggering its activation. The B-lymphocytes then are able to differentiate and mature into  [http://en.wikipedia.org/wiki/Plasma_cells plasma cells].&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;The plasma cells create large quantities of anti-OspA antibodies specific to this strain of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; and release them into the CSF.&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;The anti-OspA antibodies will then bind to the OspA on the spirochete’s membrane, thus killing the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt;.&amp;lt;/li&amp;gt;&lt;br /&gt;
&amp;lt;/ol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
This process is two-sided in the sense that the OspA aids in the pathogenesis of new symptoms (neuroborreliosis) through the chemokine’s actions, as well as initiating the signaling cascade to destroy itself.&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;OspA Vaccination&amp;lt;/h2&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;Structure load=&amp;quot;1fj1&amp;quot; size=&amp;quot;350&amp;quot; frame=&amp;quot;true&amp;quot; align=&amp;quot;right&amp;quot; name=&amp;quot;complex&amp;quot; caption=&amp;quot;Outer surface protein A (OspA) in complex with the LA-2 Fab antibody ([[1fj1|1FJ1]]).&amp;quot; scene=&amp;quot;Studio:G2SecL03/Ospafab-orig/3&amp;quot;/&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Risk of developing Lyme disease can be mitigated by staying clear of areas with populations of ticks, wearing proper attire to minimize easily bitten areas of the body, and using insect repellents containing [http://en.wikipedia.org/wiki/DEET DEET] (N,N-diethy-m-toluamide). However, another effective means for prevention could be possible by using an outer surface protein from &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; in the creation of a vaccine.&amp;lt;ref name=&amp;quot;nigrovic&amp;quot;&amp;gt;PMID: 16893489&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
The membrane composition of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; is abundant in both OspA and OspB, and the two proteins share a 53% similarity in their primary sequences. Both OspA and OspB are expressed in the tick&#039;s gut and downregulated during feeding and aid in its survivability; however, OspA is overall less varied and reactive than OspB, which has greater variability.&amp;lt;ref name=&amp;quot;becker&amp;quot;&amp;gt;PMID: 15713683&amp;lt;/ref&amp;gt; The relatively conserved sequence of OspA thus lends itself better to study and application toward the development of a vaccine for a broader range of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; strains in the treatment of Lyme disease than that of OspB. The first vaccine used a purified recombinant form of OspA and functioned in blocking transmission of the spirochetes expressing OspA from tick to host during feeding, killing them while still attached to the tick&#039;s gut.&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;battisti&amp;quot;&amp;gt;PMID: 18779341&amp;lt;/ref&amp;gt; The vaccine, Lymerix, had shown 76% and 92% effectiveness in separate clinical trials in which patients were treated for two years following a three-dose schedule. However, the vaccination was suspended from use in 2002 when opponents claimed the [http://en.wikipedia.org/wiki/Immunoglobulin_G IgG antibodies] for OspA were associated with the onset of severe chronic arthritis, as well as other side effects affecting immunity.&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;plotkin&amp;quot;&amp;gt;PMID: 21217175&amp;lt;/ref&amp;gt;  This fact, in conjunction with the desire for a more widespread vaccine treating multiple strains of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt;, has spurred research towards a new vaccine.&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
To address this problem of international protection it would be helpful to create a chimera, mixing the OspA of different species. In order to do this the epitope of OspA should be studied. &amp;lt;scene name=&#039;Studio:G2SecL03/Ospafab-fab/3&#039; target=&amp;quot;complex&amp;quot;&amp;gt;LA-2&amp;lt;/scene&amp;gt; is a murine monoclonal antibody that &amp;lt;scene name=&#039;Studio:G2SecL03/Ospafab-interaction/3&#039; target=&amp;quot;complex&amp;quot;&amp;gt;binds strongly&amp;lt;/scene&amp;gt; to &amp;lt;scene name=&#039;Studio:G2SecL03/Ospafab-ospa/3&#039; target=&amp;quot;complex&amp;quot;&amp;gt;OspA&amp;lt;/scene&amp;gt;, and how effective a vaccine is correlated with LA-2 binding. 5&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;scene name=&#039;Studio:G2SecL03/Ospafab-orig/3&#039; target=&amp;quot;complex&amp;quot;&amp;gt;Reset model&amp;lt;/scene&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;Structure of OspA&amp;lt;/h2&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;Structure load=&amp;quot;1fj1&amp;quot; size=&amp;quot;350&amp;quot; frame=&amp;quot;true&amp;quot; align=&amp;quot;right&amp;quot; name=&amp;quot;OspA-manip&amp;quot; caption=&amp;quot;Outer surface protein A (OspA) ([[1fj1|1FJ1]], chain F)&amp;quot; scene=&amp;quot;Studio:G2SecL03/Ospa_3loopscartoon/3&amp;quot;/&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
OspA is made up of 273 residues over 21 anti-parallel β-sheets and a single α-helix. It&#039;s folded conformation is divided into three main sections: a N-terminus &amp;quot;sandwich,&amp;quot; a central region comprising of several β-sheets and a C-terminus &amp;quot;barrel&amp;quot; domain.&amp;lt;ref name=&amp;quot;ding&amp;quot;&amp;gt;PMID: 11183781&amp;lt;/ref&amp;gt; The folded regions at its ends are connected by a single β-sheet layer in the middle, giving the protein the unique shape of a dumbell.&amp;lt;ref name=&amp;quot;makabe&amp;quot;&amp;gt;PMID: 16823038&amp;lt;/ref&amp;gt; &lt;br /&gt;
&lt;br /&gt;
There are &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops/4&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;three loops&amp;lt;/scene&amp;gt; at the C-terminus of OspA that are important in binding with the LA-2 Fab antibody, whose interactions provide great insight into vaccine research and effectiveness. Within these loops, there are &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-nor/3&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;three residues&amp;lt;/scene&amp;gt; &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-r/2&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;(show residue R-groups)&amp;lt;/scene&amp;gt; where there are distinct variations between the different strains of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; and serve as potential targets for the creation of a broader vaccine.&amp;lt;ref name=&amp;quot;ding&amp;quot;&amp;gt;PMID: 11183781&amp;lt;/ref&amp;gt; &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops3res/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;(display both the three loops and three residues together)&amp;lt;/scene&amp;gt; &lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-loop1/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Loop 1&amp;lt;/scene&amp;gt;, (residues 203-220), is important in showing variation amongst the different strains of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; as well as being optimally conformed for binding without steric hindrance. &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-loop2/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Loop 2&amp;lt;/scene&amp;gt; (residues 224-233) and &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-loop3/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Loop 3&amp;lt;/scene&amp;gt; (residues 246-257) are more strongly conserved than Loop 1 but also help to show some variation amongst strains. The LA-2 Fab antibody readily recognizes OspA from &amp;lt;i&amp;gt;B. burgdorferi&amp;lt;/i&amp;gt;, but does not recognize that from &amp;lt;i&amp;gt;B. afzelii&amp;lt;/i&amp;gt; or &amp;lt;i&amp;gt;B. garinii&amp;lt;/i&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
Between Bb. and Ba. genetic sequences are generally invariant, but two residues change between the species, ALA 208 &amp;lt;&amp;lt;ALA 208&amp;gt;&amp;gt; in Bb. is GLN in Ba., and ASN 251 &amp;lt;&amp;lt;ASN 251&amp;gt;&amp;gt; in Bb. is ALA in Ba.. Bg. has more variation and in addition to the previous two differences, has at least one more difference, where ALA 215 &amp;lt;&amp;lt;ALA 215&amp;gt;&amp;gt; in Bb. is LYS, Bg. sometimes also has a deletion at Bb.’s ALA 208. LA-2 and OspA of Bb. form a tight interface when binding, and the longer GLN sidechain found in Ba. and Bg. is more difficult to accommodate, causing less binding. A chimera that was weakly recognized by LA-2 was made with parts of loop 1 from Bb., and loops 2 and 3 from Bg. 5 Recently, a different kind of chimera has been made which combined the proximal region of Bb. and distal region of Ba., and was able to successfully protect mice from both species. 8&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h3&amp;gt;List of Available Scenes for OspA&amp;lt;/h3&amp;gt;&lt;br /&gt;
&amp;lt;ul&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa_3loopscartoon/3&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Reset model&amp;lt;/scene&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops/4&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Three loops&amp;lt;/scene&amp;gt; in C-terminus (close up)&lt;br /&gt;
         &amp;lt;ul&amp;gt;&lt;br /&gt;
           &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-loop1/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Loop 1&amp;lt;/scene&amp;gt; (residues 203-220)&amp;lt;/li&amp;gt;&lt;br /&gt;
           &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-loop2/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Loop 2&amp;lt;/scene&amp;gt; (residues 224-233)&amp;lt;/li&amp;gt;&lt;br /&gt;
           &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-loop3/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Loop 3&amp;lt;/scene&amp;gt; (residues 246-257)&amp;lt;/li&amp;gt;&lt;br /&gt;
         &amp;lt;/ul&amp;gt;&lt;br /&gt;
     &amp;lt;/li&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-nor/3&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Three residues&amp;lt;/scene&amp;gt; in C-terminus (Ala208, Ala215 and Asn251 in &amp;lt;i&amp;gt;B. burgdorferi&amp;lt;/i&amp;gt;; also hides R-groups)&lt;br /&gt;
         &amp;lt;ul&amp;gt;&lt;br /&gt;
           &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-r/2&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Display R-groups&amp;lt;/scene&amp;gt; of Ala208, Ala215 and Asn251&amp;lt;/li&amp;gt;&lt;br /&gt;
         &amp;lt;/ul&amp;gt;&lt;br /&gt;
     &amp;lt;/li&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops3res/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Three loops and all three residues (with R-groups included)&amp;lt;/scene&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
&amp;lt;/ul&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;References&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;references /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;External Links&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;ul&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://www.who.int/ith/diseases/lyme/en/index.html World Health Organization: Lyme Disease]&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://www.ncbi.nlm.nih.gov/pubmedhealth/PMH0002296/ PubMed Health: Lyme Disease]&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://www.aldf.com/ American Lyme Disease Foundation]&lt;br /&gt;
&amp;lt;/ul&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;Proteopedia Page Contributors and Editors&amp;lt;/h2&amp;gt;&lt;br /&gt;
[http://proteopedia.org/wiki/index.php/User:Kimberly_Slade Kimberly Slade], [http://proteopedia.org/wiki/index.php/User:Cara_Lin Cara Lin], [http://proteopedia.org/wiki/index.php/User:Andrea_Mullen Andrea Mullen], [http://proteopedia.org/wiki/index.php/User:Jenny_Kim_Kim Jenny Kim Kim]&lt;br /&gt;
&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&lt;/div&gt;</summary>
		<author><name>Jenny Kim Kim</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=User:Marvin_O%27Neal/OspA&amp;diff=1388175</id>
		<title>User:Marvin O&#039;Neal/OspA</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=User:Marvin_O%27Neal/OspA&amp;diff=1388175"/>
		<updated>2012-05-04T19:38:17Z</updated>

		<summary type="html">&lt;p&gt;Jenny Kim Kim: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;Structure load=&amp;quot;1fj1&amp;quot; size=&amp;quot;350&amp;quot; frame=&amp;quot;true&amp;quot; align=&amp;quot;right&amp;quot; name=&amp;quot;OspA-secondary&amp;quot; caption=&amp;quot;Outer surface protein A (OspA) ([[1fj1|1FJ1]], chain F) showing secondary structures.&amp;quot; scene=&amp;quot;Studio:G2SecL03/Ospa_default/5&amp;quot;/&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
&amp;lt;b&amp;gt;Outer Surface Protein A (OspA)&amp;lt;/b&amp;gt; is a major lipoprotein found on the surface of [http://en.wikipedia.org/wiki/Spirochaete spirochetes] from the genus [http://en.wikipedia.org/wiki/Borrelia &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt;] and is comprised of 21 anti-parallel β-sheets and a single α-helix. OspA&#039;s expression is regulated at different points in time, from being downregulated during the tick&#039;s feeding process on its host to being upregulated in the host&#039;s cerebrospinal fluid (CSF) to induce inflammatory response, resulting in acute Lyme [http://en.wikipedia.org/wiki/Neuroborreliosis neuroborreliosis]. OspA has also been used as a vector in working towards the development of a vaccine for [http://en.wikipedia.org/wiki/Lyme_disease Lyme disease].&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;Introduction&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Lyme disease is caused by the spirochete &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; and spread via hard-bodied ticks belonging to the family [http://en.wikipedia.org/wiki/Ixodidae &amp;lt;i&amp;gt;Ixodidae&amp;lt;/i&amp;gt;]. The &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; spirochetes are motile, helical organisms have several lipoproteins exposed on the surfaces of their membranes that invoke a response from host immune systems. The predominant group of these is classified as the outer surface proteins (Osps). Both the pathogenesis of Lyme disease as well as the host&#039;s immune response stem from the effects of the spirochete&#039;s presence and involvement in the system.&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
The major strain of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; in the United States is [http://en.wikipedia.org/wiki/Borrelia_burgdorferi &amp;lt;i&amp;gt;Borrelia burgdorferi&amp;lt;/i&amp;gt;] &amp;lt;i&amp;gt;sensu stricto (Bb.)&amp;lt;/i&amp;gt;, with 20-100 cases of Lyme disease being reported per 100,000 people. In Europe, Lyme disease cases are more prevalent, with 100-130 diagnoses per 100,000 people, but are caused by the spirochetes [http://en.wikipedia.org/wiki/Borrelia_afzelii &amp;lt;i&amp;gt;Borrelia afzelii (Ba.)&amp;lt;/i&amp;gt;] and [http://en.wikipedia.org/wiki/Borrelia_garinii &amp;lt;i&amp;gt;Borrelia garinii (Bg.)&amp;lt;/i&amp;gt;] in addition to &amp;lt;i&amp;gt;B. burgdorferi&amp;lt;/i&amp;gt;.&amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;ding&amp;quot;&amp;gt;PMID: 11183781&amp;lt;/ref&amp;gt; &lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Lyme disease is a debilitating condition that begins with a characteristic bullseye rash known as an [http://en.wikipedia.org/wiki/Erythema_chronicum_migrans erythema migrans (EM)] as well as the development of lesions on other parts of the body, not just at the site of the tick&#039;s attachment to its host. Secondary stage symptoms include affecting the heart, joints, and both the central and peripheral nervous systems.  OspA is used in adhering to the tick&#039;s gut by binding with the tick receptor for OspA (TROSPA), a receptor necessary for the colonization of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; inside the tick. High levels of both OspA and TROSPA are found prior to feeding, but are downregulated once the feeding process begins in order to initiate transmission into the host.&amp;lt;ref name=&amp;quot;pal&amp;quot;&amp;gt;PMID: 15537536&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
While feeding, OspA is downregulated in order to evade an immune response from the incoming host blood into the gut, releasing the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; from the gut wall and migrating into the tick&#039;s salivary glands, thereby allowing it to enter the host through the bite. This is evidenced by the fact that patients with Lyme disease have been found to not possess OspA antibodies in the early stages of the disease.&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt; OspA is the protein most related to acute Lyme neuroborreliosis (LNB), the neurological manifestations of Lyme disease.  &lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;OspA&#039;s Role in Invasion&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Once inside the host, the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; has a great number of mechanisms available to actively suppress the host&#039;s immune system response and neutralize its effector mechanisms, such as the expression of another outer surface protein, OspC, which prevents susceptibility to the host&#039;s [http://en.wikipedia.org/wiki/Innate_immune_system innate immunity] and [http://en.wikipedia.org/wiki/Complement_system complement systems]. Additionally, &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; is capable of suppressing many of its surface proteins to reduce its detectability, but can also utilize protective means by temporarily expressing them when needed.&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h3&amp;gt;Acute Lyme Neuroborreliosis (LNB)&amp;lt;/h3&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Acute Lyme Neuroborreliosis (LNB) is part of the second stage of Lyme disease in which the spirochete invades the peripheral and central nervous systems (CNS). Symptoms of LNB include: meningoradiculitis with inflammation of the nerve roots and [http://en.wikipedia.org/wiki/Radicular_pain radiculitis] (Bannwarth’s syndrome), lymphocytic meningitis, and cranial and [http://www.ncbi.nlm.nih.gov/pubmedhealth/PMH0001619/ peripheral neuritis]. In Europe, the strain predominantly found in the CSF of patients with Bannwarth&#039;s syndrome is &amp;lt;i&amp;gt;B. garinii&amp;lt;/i&amp;gt;. However, in the United States, Bannwarth&#039;s syndrome is rare and the most common manifestations of Lyme neuroborreliosis is [http://en.wikipedia.org/wiki/Meningitis meningitis], caused by &amp;lt;i&amp;gt;B. burgdorferi&amp;lt;/i&amp;gt;. The presence of OspA in the cerebrospinal fluid (CSF) is responsible for this complex inflammatory response in the brain that leads to the neuroborreliosis.&amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h3&amp;gt;Evasion and the Extracellular Matrix&amp;lt;/h3&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
The &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; are able to hide in the [http://en.wikipedia.org/wiki/Extracellular_matrix extracellular matrix], allowing it to survive by avoiding [http://en.wikipedia.org/wiki/Leukocytes leukocytes] circulating in the bloodstream. OspA can rapidly bind to plasminogen, which becomes [http://en.wikipedia.org/wiki/Plasmin plasmin] once activated, and degrades the extracellular matrix. By binding to plasminogen, &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; could be exploiting its function and utilizing it to invade the extracellular matrix. However, due to the fact that OspA is downregulated during feeding, and stays unexpressed, a different mechanism may be used instead. Additionally, &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; induces the local upregulation of matrix metalloproteinase-9, causing the digestion of the surrounding extracellular matrix. &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; can also bind to several proteins in the extracellular matrix, such as [http://en.wikipedia.org/wiki/Fibronectin fibronectin], [http://en.wikipedia.org/wiki/Integrins integrins] or [http://en.wikipedia.org/wiki/Decorin decorin], which can aid in the spread and survival of the spirochetes in these tissues.&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h3&amp;gt;Role in Inflammation&amp;lt;/h3&amp;gt;&lt;br /&gt;
&lt;br /&gt;
[[Image:G2L03-OspA-mechanism.jpg|thumb|300px|Mechanism of the host inflammatory response to OspA]]&lt;br /&gt;
&lt;br /&gt;
There are six steps involved in the host&#039;s inflammatory response to OspA: &amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt;&amp;lt;br&amp;gt;&lt;br /&gt;
&amp;lt;ol&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;When the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; enter the host’s CNS they encounter several different types of immune cells such as [http://en.wikipedia.org/wiki/Monocyte monocytes], [http://en.wikipedia.org/wiki/Macrophages macrophages], and [http://en.wikipedia.org/wiki/Dendritic_cells dendritic cells]. While in the CSF, outer surface protein A (OspA) is upregulated and it’s increased expression promotes recognition by a specific receptor on a monocyte.&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;The OspA-bound monocyte then releases proinflammatory [http://en.wikipedia.org/wiki/Cytokine cytokines] (i.e. [http://en.wikipedia.org/wiki/Interferon interferon]), as well as [http://en.wikipedia.org/wiki/Chemokine chemokines], such as [http://en.wikipedia.org/wiki/CXCL13 CXCL13]. In patients with LNB, there is an observed increase in the levels of these cytokines and chemokines in their CSF. The production of chemokines leads to the recruitment of other immune cells to the site of infection.&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://en.wikipedia.org/wiki/B_lymphocyte B-lymphocytes] respond to the new concentration gradient of CXCL13 between the blood and CSF and migrate into the CSF.&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;B-lymphocytes undergo [http://en.wikipedia.org/wiki/Receptor-mediated_endocytosis receptor-mediated endocytosis], consuming the OspA antigens present in the CSF, thereby triggering its activation. The B-lymphocytes then are able to differentiate and mature into  [http://en.wikipedia.org/wiki/Plasma_cells plasma cells].&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;The plasma cells create large quantities of anti-OspA antibodies specific to this strain of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; and release them into the CSF.&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;The anti-OspA antibodies will then bind to the OspA on the spirochete’s membrane, thus killing the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt;.&amp;lt;/li&amp;gt;&lt;br /&gt;
&amp;lt;/ol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
This process is two-sided in the sense that the OspA aids in the pathogenesis of new symptoms (neuroborreliosis) through the chemokine’s actions, as well as initiating the signaling cascade to destroy itself.&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;OspA Vaccination&amp;lt;/h2&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;Structure load=&amp;quot;1fj1&amp;quot; size=&amp;quot;350&amp;quot; frame=&amp;quot;true&amp;quot; align=&amp;quot;right&amp;quot; name=&amp;quot;complex&amp;quot; caption=&amp;quot;Outer surface protein A (OspA) in complex with the LA-2 Fab antibody ([[1fj1|1FJ1]]).&amp;quot; scene=&amp;quot;Studio:G2SecL03/Ospafab-orig/3&amp;quot;/&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Risk of developing Lyme disease can be mitigated by staying clear of areas with populations of ticks, wearing proper attire to minimize easily bitten areas of the body, and using insect repellents containing [http://en.wikipedia.org/wiki/DEET DEET] (N,N-diethy-m-toluamide). However, another effective means for prevention could be possible by using an outer surface protein from &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; in the creation of a vaccine.&amp;lt;ref name=&amp;quot;nigrovic&amp;quot;&amp;gt;PMID: 16893489&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
The membrane composition of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; is abundant in both OspA and OspB, and the two proteins share a 53% similarity in their primary sequences. Both OspA and OspB are expressed in the tick&#039;s gut and downregulated during feeding and aid in its survivability; however, OspA is overall less varied and reactive than OspB, which has greater variability.&amp;lt;ref name=&amp;quot;becker&amp;quot;&amp;gt;PMID: 15713683&amp;lt;/ref&amp;gt; The relatively conserved sequence of OspA thus lends itself better to study and application toward the development of a vaccine for a broader range of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; strains in the treatment of Lyme disease than that of OspB. The first vaccine used a purified recombinant form of OspA and functioned in blocking transmission of the spirochetes expressing OspA from tick to host during feeding, killing them while still attached to the tick&#039;s gut.&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;battisti&amp;quot;&amp;gt;PMID: 18779341&amp;lt;/ref&amp;gt; The vaccine, Lymerix, had shown 76% and 92% effectiveness in separate clinical trials in which patients were treated for two years following a three-dose schedule. However, the vaccination was suspended from use in 2002 when opponents claimed the [http://en.wikipedia.org/wiki/Immunoglobulin_G IgG antibodies] for OspA were associated with the onset of severe chronic arthritis, as well as other side effects affecting immunity.&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;plotkin&amp;quot;&amp;gt;PMID: 21217175&amp;lt;/ref&amp;gt;  This fact, in conjunction with the desire for a more widespread vaccine treating multiple strains of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt;, has spurred research towards a new vaccine.&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
To address this problem of international protection it would be helpful to create a chimera, mixing the OspA of different species. In order to do this the epitope of OspA should be studied. &amp;lt;scene name=&#039;Studio:G2SecL03/Ospafab-fab/3&#039; target=&amp;quot;complex&amp;quot;&amp;gt;LA-2&amp;lt;/scene&amp;gt; is a murine monoclonal antibody that &amp;lt;scene name=&#039;Studio:G2SecL03/Ospafab-interaction/3&#039; target=&amp;quot;complex&amp;quot;&amp;gt;binds strongly&amp;lt;/scene&amp;gt; to &amp;lt;scene name=&#039;Studio:G2SecL03/Ospafab-ospa/3&#039; target=&amp;quot;complex&amp;quot;&amp;gt;OspA&amp;lt;/scene&amp;gt;, and how effective a vaccine is correlated with LA-2 binding. 5&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;scene name=&#039;Studio:G2SecL03/Ospafab-orig/3&#039; target=&amp;quot;complex&amp;quot;&amp;gt;Reset model&amp;lt;/scene&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;Structure of OspA&amp;lt;/h2&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;Structure load=&amp;quot;1fj1&amp;quot; size=&amp;quot;350&amp;quot; frame=&amp;quot;true&amp;quot; align=&amp;quot;right&amp;quot; name=&amp;quot;OspA-manip&amp;quot; caption=&amp;quot;Outer surface protein A (OspA) ([[1fj1|1FJ1]], chain F)&amp;quot; scene=&amp;quot;Studio:G2SecL03/Ospa_3loopscartoon/3&amp;quot;/&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
OspA is made up of 273 residues over 21 anti-parallel β-sheets and a single α-helix. It&#039;s folded conformation is divided into three main sections: a N-terminus &amp;quot;sandwich,&amp;quot; a central region comprising of several β-sheets and a C-terminus &amp;quot;barrel&amp;quot; domain.&amp;lt;ref name=&amp;quot;ding&amp;quot;&amp;gt;PMID: 11183781&amp;lt;/ref&amp;gt; The folded regions at its ends are connected by a single β-sheet layer in the middle, giving the protein the unique shape of a dumbell.&amp;lt;ref name=&amp;quot;makabe&amp;quot;&amp;gt;PMID: 16823038&amp;lt;/ref&amp;gt; &lt;br /&gt;
&lt;br /&gt;
There are &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops/4&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;three loops&amp;lt;/scene&amp;gt; at the C-terminus of OspA that are important in binding with the LA-2 Fab antibody, whose interactions provide great insight into vaccine research and effectiveness. Within these loops, there are &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-nor/3&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;three residues&amp;lt;/scene&amp;gt; &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-r/2&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;(show residue R-groups)&amp;lt;/scene&amp;gt; where there are distinct variations between the different strains of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; and serve as potential targets for the creation of a broader vaccine.&amp;lt;ref name=&amp;quot;ding&amp;quot;&amp;gt;PMID: 11183781&amp;lt;/ref&amp;gt; &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops3res/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;(display both the three loops and three residues together)&amp;lt;/scene&amp;gt; &lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-loop1/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Loop 1&amp;lt;/scene&amp;gt;, (residues 203-220), is important in showing variation amongst the different strains of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; as well as being optimally conformed for binding without steric hindrance. &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-loop2/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Loop 2&amp;lt;/scene&amp;gt; (residues 224-233) and &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-loop3/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Loop 3&amp;lt;/scene&amp;gt; (residues 246-257) are more strongly conserved than Loop 1 but also help to show some variation amongst strains. The LA-2 Fab antibody readily recognizes OspA from &amp;lt;i&amp;gt;B. burgdorferi&amp;lt;/i&amp;gt;, but does not recognize that from &amp;lt;i&amp;gt;B. afzelii&amp;lt;/i&amp;gt; or &amp;lt;i&amp;gt;B. garinii&amp;lt;/i&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
Between Bb. and Ba. genetic sequences are generally invariant, but two residues change between the species, ALA 208 &amp;lt;&amp;lt;ALA 208&amp;gt;&amp;gt; in Bb. is GLN in Ba., and ASN 251 &amp;lt;&amp;lt;ASN 251&amp;gt;&amp;gt; in Bb. is ALA in Ba.. Bg. has more variation and in addition to the previous two differences, has at least one more difference, where ALA 215 &amp;lt;&amp;lt;ALA 215&amp;gt;&amp;gt; in Bb. is LYS, Bg. sometimes also has a deletion at Bb.’s ALA 208. LA-2 and OspA of Bb. form a tight interface when binding, and the longer GLN sidechain found in Ba. and Bg. is more difficult to accommodate, causing less binding. A chimera that was weakly recognized by LA-2 was made with parts of loop 1 from Bb., and loops 2 and 3 from Bg. 5 Recently, a different kind of chimera has been made which combined the proximal region of Bb. and distal region of Ba., and was able to successfully protect mice from both species. 8&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h3&amp;gt;List of Available Scenes for OspA&amp;lt;/h3&amp;gt;&lt;br /&gt;
&amp;lt;ul&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa_3loopscartoon/3&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Reset model&amp;lt;/scene&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops/4&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Three loops&amp;lt;/scene&amp;gt; in C-terminus (close up)&lt;br /&gt;
         &amp;lt;ul&amp;gt;&lt;br /&gt;
           &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-loop1/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Loop 1&amp;lt;/scene&amp;gt; (residues 203-220)&amp;lt;/li&amp;gt;&lt;br /&gt;
           &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-loop2/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Loop 2&amp;lt;/scene&amp;gt; (residues 224-233)&amp;lt;/li&amp;gt;&lt;br /&gt;
           &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-loop3/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Loop 3&amp;lt;/scene&amp;gt; (residues 246-257)&amp;lt;/li&amp;gt;&lt;br /&gt;
         &amp;lt;/ul&amp;gt;&lt;br /&gt;
     &amp;lt;/li&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-nor/3&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Three residues&amp;lt;/scene&amp;gt; in C-terminus (Ala208, Ala215 and Asn251 in &amp;lt;i&amp;gt;B. burgdorferi&amp;lt;/i&amp;gt;; also hides R-groups)&lt;br /&gt;
         &amp;lt;ul&amp;gt;&lt;br /&gt;
           &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-r/2&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Display R-groups&amp;lt;/scene&amp;gt; of Ala208, Ala215 and Asn251&amp;lt;/li&amp;gt;&lt;br /&gt;
         &amp;lt;/ul&amp;gt;&lt;br /&gt;
     &amp;lt;/li&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops3res/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Three loops and all three residues (with R-groups included)&amp;lt;/scene&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
&amp;lt;/ul&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;References&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;references /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;External Links&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;ul&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://www.who.int/ith/diseases/lyme/en/index.html World Health Organization: Lyme Disease]&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://www.ncbi.nlm.nih.gov/pubmedhealth/PMH0002296/ PubMed Health: Lyme Disease]&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://www.aldf.com/ American Lyme Disease Foundation]&lt;br /&gt;
&amp;lt;/ul&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;Proteopedia Page Contributors and Editors&amp;lt;/h2&amp;gt;&lt;br /&gt;
[http://proteopedia.org/wiki/index.php/User:Kimberly_Slade Kimberly Slade], [http://proteopedia.org/wiki/index.php/User:Cara_Lin Cara Lin], [http://proteopedia.org/wiki/index.php/User:Andrea_Mullen Andrea Mullen], [http://proteopedia.org/wiki/index.php/User:Jenny_Kim_Kim Jenny Kim Kim]&lt;br /&gt;
&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&lt;/div&gt;</summary>
		<author><name>Jenny Kim Kim</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=User:Marvin_O%27Neal/OspA&amp;diff=1388172</id>
		<title>User:Marvin O&#039;Neal/OspA</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=User:Marvin_O%27Neal/OspA&amp;diff=1388172"/>
		<updated>2012-05-04T19:35:28Z</updated>

		<summary type="html">&lt;p&gt;Jenny Kim Kim: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;Structure load=&amp;quot;1fj1&amp;quot; size=&amp;quot;350&amp;quot; frame=&amp;quot;true&amp;quot; align=&amp;quot;right&amp;quot; name=&amp;quot;OspA-secondary&amp;quot; caption=&amp;quot;Outer surface protein A (OspA) ([[1fj1|1FJ1]], chain F) showing secondary structures.&amp;quot; scene=&amp;quot;Studio:G2SecL03/Ospa_default/5&amp;quot;/&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
&amp;lt;b&amp;gt;Outer Surface Protein A (OspA)&amp;lt;/b&amp;gt; is a major lipoprotein found on the surface of [http://en.wikipedia.org/wiki/Spirochaete spirochetes] from the genus [http://en.wikipedia.org/wiki/Borrelia &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt;] and is comprised of 21 anti-parallel β-sheets and a single α-helix. OspA&#039;s expression is regulated at different points in time, from being downregulated during the tick&#039;s feeding process on its host to being upregulated in the host&#039;s cerebrospinal fluid (CSF) to induce inflammatory response, resulting in acute Lyme [http://en.wikipedia.org/wiki/Neuroborreliosis neuroborreliosis]. OspA has also been used as a vector in working towards the development of a vaccine for [http://en.wikipedia.org/wiki/Lyme_disease Lyme disease].&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;Introduction&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Lyme disease is caused by the spirochete &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; and spread via hard-bodied ticks belonging to the family [http://en.wikipedia.org/wiki/Ixodidae &amp;lt;i&amp;gt;Ixodidae&amp;lt;/i&amp;gt;]. The &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; spirochetes are motile, helical organisms have several lipoproteins exposed on the surfaces of their membranes that invoke a response from host immune systems. The predominant group of these is classified as the outer surface proteins (Osps). Both the pathogenesis of Lyme disease as well as the host&#039;s immune response stem from the effects of the spirochete&#039;s presence and involvement in the system.&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
The major strain of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; in the United States is [http://en.wikipedia.org/wiki/Borrelia_burgdorferi &amp;lt;i&amp;gt;Borrelia burgdorferi&amp;lt;/i&amp;gt;] &amp;lt;i&amp;gt;sensu stricto (Bb.)&amp;lt;/i&amp;gt;, with 20-100 cases of Lyme disease being reported per 100,000 people. In Europe, Lyme disease cases are more prevalent, with 100-130 diagnoses per 100,000 people, but are caused by the spirochetes [http://en.wikipedia.org/wiki/Borrelia_afzelii &amp;lt;i&amp;gt;Borrelia afzelii (Ba.)&amp;lt;/i&amp;gt;] and [http://en.wikipedia.org/wiki/Borrelia_garinii &amp;lt;i&amp;gt;Borrelia garinii (Bg.)&amp;lt;/i&amp;gt;] in addition to &amp;lt;i&amp;gt;B. burgdorferi&amp;lt;/i&amp;gt;.&amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;ding&amp;quot;&amp;gt;PMID: 11183781&amp;lt;/ref&amp;gt; &lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Lyme disease is a debilitating condition that begins with a characteristic bullseye rash known as an [http://en.wikipedia.org/wiki/Erythema_chronicum_migrans erythema migrans (EM)] as well as the development of lesions on other parts of the body, not just at the site of the tick&#039;s attachment to its host. Secondary stage symptoms include affecting the heart, joints, and both the central and peripheral nervous systems.  OspA is used in adhering to the tick&#039;s gut by binding with the tick receptor for OspA (TROSPA), a receptor necessary for the colonization of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; inside the tick. High levels of both OspA and TROSPA are found prior to feeding, but are downregulated once the feeding process begins in order to initiate transmission into the host.&amp;lt;ref name=&amp;quot;pal&amp;quot;&amp;gt;PMID: 15537536&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
While feeding, OspA is downregulated in order to evade an immune response from the incoming host blood into the gut, releasing the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; from the gut wall and migrating into the tick&#039;s salivary glands, thereby allowing it to enter the host through the bite. This is evidenced by the fact that patients with Lyme disease have been found to not possess OspA antibodies in the early stages of the disease.&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt; OspA is the protein most related to acute Lyme neuroborreliosis (LNB), the neurological manifestations of Lyme disease.  &lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;OspA&#039;s Role in Invasion&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Once inside the host, the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; has a great number of mechanisms available to actively suppress the host&#039;s immune system response and neutralize its effector mechanisms, such as the expression of another outer surface protein, OspC, which prevents susceptibility to the host&#039;s [http://en.wikipedia.org/wiki/Innate_immune_system innate immunity] and [http://en.wikipedia.org/wiki/Complement_system complement systems]. Additionally, &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; is capable of suppressing many of its surface proteins to reduce its detectability, but can also utilize protective means by temporarily expressing them when needed.&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h3&amp;gt;Acute Lyme Neuroborreliosis (LNB)&amp;lt;/h3&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Acute Lyme Neuroborreliosis (LNB) is part of the second stage of Lyme disease in which the spirochete invades the peripheral and central nervous systems (CNS). Symptoms of LNB include: meningoradiculitis with inflammation of the nerve roots and [http://en.wikipedia.org/wiki/Radicular_pain radiculitis] (Bannwarth’s syndrome), lymphocytic meningitis, and cranial and [http://www.ncbi.nlm.nih.gov/pubmedhealth/PMH0001619/ peripheral neuritis]. In Europe, the strain predominantly found in the CSF of patients with Bannwarth&#039;s syndrome is &amp;lt;i&amp;gt;B. garinii&amp;lt;/i&amp;gt;. However, in the United States, Bannwarth&#039;s syndrome is rare and the most common manifestations of Lyme neuroborreliosis is [http://en.wikipedia.org/wiki/Meningitis meningitis], caused by &amp;lt;i&amp;gt;B. burgdorferi&amp;lt;/i&amp;gt;. The presence of OspA in the cerebrospinal fluid (CSF) is responsible for this complex inflammatory response in the brain that leads to the neuroborreliosis.&amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h3&amp;gt;Evasion and the Extracellular Matrix&amp;lt;/h3&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
The &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; are able to hide in the [http://en.wikipedia.org/wiki/Extracellular_matrix extracellular matrix], allowing it to survive by avoiding [http://en.wikipedia.org/wiki/Leukocytes leukocytes] circulating in the bloodstream. OspA can rapidly bind to plasminogen, which becomes [http://en.wikipedia.org/wiki/Plasmin plasmin] once activated, and degrades the extracellular matrix. By binding to plasminogen, &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; could be utilizing its function to invade the extracellular matrix. However, due to the fact that OspA is downregulated during biting, and stays unexpressed, there might be another potential mechanism instead. Additionally, &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; induces the local upregulation of matrix metalloproteinase-9, causing the digestion of the surrounding extracellular matrix. &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; can also bind to several proteins in the extracellular matrix, such as [http://en.wikipedia.org/wiki/Fibronectin fibronectin], [http://en.wikipedia.org/wiki/Integrins integrins] or [http://en.wikipedia.org/wiki/Decorin decorin], which can aid in the spread and survival of the spirochetes in these tissues.&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h3&amp;gt;Role in Inflammation&amp;lt;/h3&amp;gt;&lt;br /&gt;
&lt;br /&gt;
[[Image:G2L03-OspA-mechanism.jpg|thumb|300px|Mechanism of the host inflammatory response to OspA]]&lt;br /&gt;
&lt;br /&gt;
There are six steps involved in the host&#039;s inflammatory response to OspA: &amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt;&amp;lt;br&amp;gt;&lt;br /&gt;
&amp;lt;ol&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;When the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; enter the host’s CNS they encounter several different types of immune cells such as [http://en.wikipedia.org/wiki/Monocyte monocytes], [http://en.wikipedia.org/wiki/Macrophages macrophages], and [http://en.wikipedia.org/wiki/Dendritic_cells dendritic cells]. While in the CSF, outer surface protein A (OspA) is upregulated and it’s increased expression promotes recognition by a specific receptor on a monocyte.&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;The OspA-bound monocyte then releases proinflammatory [http://en.wikipedia.org/wiki/Cytokine cytokines] (i.e. [http://en.wikipedia.org/wiki/Interferon interferon]), as well as [http://en.wikipedia.org/wiki/Chemokine chemokines], such as [http://en.wikipedia.org/wiki/CXCL13 CXCL13]. In patients with LNB, there is an observed increase in the levels of these cytokines and chemokines in their CSF. The production of chemokines leads to the recruitment of other immune cells to the site of infection.&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://en.wikipedia.org/wiki/B_lymphocyte B-lymphocytes] respond to the new concentration gradient of CXCL13 between the blood and CSF and migrate into the CSF.&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;B-lymphocytes undergo [http://en.wikipedia.org/wiki/Receptor-mediated_endocytosis receptor-mediated endocytosis], consuming the OspA antigens present in the CSF, thereby triggering its activation. The B-lymphocytes then are able to differentiate and mature into  [http://en.wikipedia.org/wiki/Plasma_cells plasma cells].&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;The plasma cells create large quantities of anti-OspA antibodies specific to this strain of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; and release them into the CSF.&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;The anti-OspA antibodies will then bind to the OspA on the spirochete’s membrane, thus killing the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt;.&amp;lt;/li&amp;gt;&lt;br /&gt;
&amp;lt;/ol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
This process is two-sided in the sense that the OspA aids in the pathogenesis of new symptoms (neuroborreliosis) through the chemokine’s actions, as well as initiating the signaling cascade to destroy itself.&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;OspA Vaccination&amp;lt;/h2&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;Structure load=&amp;quot;1fj1&amp;quot; size=&amp;quot;350&amp;quot; frame=&amp;quot;true&amp;quot; align=&amp;quot;right&amp;quot; name=&amp;quot;complex&amp;quot; caption=&amp;quot;Outer surface protein A (OspA) in complex with the LA-2 Fab antibody ([[1fj1|1FJ1]]).&amp;quot; scene=&amp;quot;Studio:G2SecL03/Ospafab-orig/3&amp;quot;/&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Risk of developing Lyme disease can be mitigated by staying clear of areas with populations of ticks, wearing proper attire to minimize easily bitten areas of the body, and using insect repellents containing [http://en.wikipedia.org/wiki/DEET DEET] (N,N-diethy-m-toluamide). However, another effective means for prevention could be possible by using an outer surface protein from &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; in the creation of a vaccine.&amp;lt;ref name=&amp;quot;nigrovic&amp;quot;&amp;gt;PMID: 16893489&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
The membrane composition of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; is abundant in both OspA and OspB, and the two proteins share a 53% similarity in their primary sequences. Both OspA and OspB are expressed in the tick&#039;s gut and downregulated during feeding and aid in its survivability; however, OspA is overall less varied and reactive than OspB, which has greater variability.&amp;lt;ref name=&amp;quot;becker&amp;quot;&amp;gt;PMID: 15713683&amp;lt;/ref&amp;gt; The relatively conserved sequence of OspA thus lends itself better to study and application toward the development of a vaccine for a broader range of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; strains in the treatment of Lyme disease than that of OspB. The first vaccine used a purified recombinant form of OspA and functioned in blocking transmission of the spirochetes expressing OspA from tick to host during feeding, killing them while still attached to the tick&#039;s gut.&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;battisti&amp;quot;&amp;gt;PMID: 18779341&amp;lt;/ref&amp;gt; The vaccine, Lymerix, had shown 76% and 92% effectiveness in separate clinical trials in which patients were treated for two years following a three-dose schedule. However, the vaccination was suspended from use in 2002 when opponents claimed the [http://en.wikipedia.org/wiki/Immunoglobulin_G IgG antibodies] for OspA were associated with the onset of severe chronic arthritis, as well as other side effects affecting immunity.&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;plotkin&amp;quot;&amp;gt;PMID: 21217175&amp;lt;/ref&amp;gt;  This fact, in conjunction with the desire for a more widespread vaccine treating multiple strains of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt;, has spurred research towards a new vaccine.&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
To address this problem of international protection it would be helpful to create a chimera, mixing the OspA of different species. In order to do this the epitope of OspA should be studied. &amp;lt;scene name=&#039;Studio:G2SecL03/Ospafab-fab/3&#039; target=&amp;quot;complex&amp;quot;&amp;gt;LA-2&amp;lt;/scene&amp;gt; is a murine monoclonal antibody that &amp;lt;scene name=&#039;Studio:G2SecL03/Ospafab-interaction/3&#039; target=&amp;quot;complex&amp;quot;&amp;gt;binds strongly&amp;lt;/scene&amp;gt; to &amp;lt;scene name=&#039;Studio:G2SecL03/Ospafab-ospa/3&#039; target=&amp;quot;complex&amp;quot;&amp;gt;OspA&amp;lt;/scene&amp;gt;, and how effective a vaccine is correlated with LA-2 binding. 5&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;scene name=&#039;Studio:G2SecL03/Ospafab-orig/3&#039; target=&amp;quot;complex&amp;quot;&amp;gt;Reset model&amp;lt;/scene&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;Structure of OspA&amp;lt;/h2&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;Structure load=&amp;quot;1fj1&amp;quot; size=&amp;quot;350&amp;quot; frame=&amp;quot;true&amp;quot; align=&amp;quot;right&amp;quot; name=&amp;quot;OspA-manip&amp;quot; caption=&amp;quot;Outer surface protein A (OspA) ([[1fj1|1FJ1]], chain F)&amp;quot; scene=&amp;quot;Studio:G2SecL03/Ospa_3loopscartoon/3&amp;quot;/&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
OspA is made up of 273 residues over 21 anti-parallel β-sheets and a single α-helix. It&#039;s folded conformation is divided into three main sections: a N-terminus &amp;quot;sandwich,&amp;quot; a central region comprising of several β-sheets and a C-terminus &amp;quot;barrel&amp;quot; domain.&amp;lt;ref name=&amp;quot;ding&amp;quot;&amp;gt;PMID: 11183781&amp;lt;/ref&amp;gt; The folded regions at its ends are connected by a single β-sheet layer in the middle, giving the protein the unique shape of a dumbell.&amp;lt;ref name=&amp;quot;makabe&amp;quot;&amp;gt;PMID: 16823038&amp;lt;/ref&amp;gt; &lt;br /&gt;
&lt;br /&gt;
There are &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops/4&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;three loops&amp;lt;/scene&amp;gt; at the C-terminus of OspA that are important in binding with the LA-2 Fab antibody, whose interactions provide great insight into vaccine research and effectiveness. Within these loops, there are &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-nor/3&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;three residues&amp;lt;/scene&amp;gt; &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-r/2&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;(show residue R-groups)&amp;lt;/scene&amp;gt; where there are distinct variations between the different strains of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; and serve as potential targets for the creation of a broader vaccine.&amp;lt;ref name=&amp;quot;ding&amp;quot;&amp;gt;PMID: 11183781&amp;lt;/ref&amp;gt; &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops3res/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;(display both the three loops and three residues together)&amp;lt;/scene&amp;gt; &lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-loop1/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Loop 1&amp;lt;/scene&amp;gt;, (residues 203-220), is important in showing variation amongst the different strains of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; as well as being optimally conformed for binding without steric hindrance. &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-loop2/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Loop 2&amp;lt;/scene&amp;gt; (residues 224-233) and &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-loop3/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Loop 3&amp;lt;/scene&amp;gt; (residues 246-257) are more strongly conserved than Loop 1 but also help to show some variation amongst strains. The LA-2 Fab antibody readily recognizes OspA from &amp;lt;i&amp;gt;B. burgdorferi&amp;lt;/i&amp;gt;, but does not recognize that from &amp;lt;i&amp;gt;B. afzelii&amp;lt;/i&amp;gt; or &amp;lt;i&amp;gt;B. garinii&amp;lt;/i&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
Between Bb. and Ba. genetic sequences are generally invariant, but two residues change between the species, ALA 208 &amp;lt;&amp;lt;ALA 208&amp;gt;&amp;gt; in Bb. is GLN in Ba., and ASN 251 &amp;lt;&amp;lt;ASN 251&amp;gt;&amp;gt; in Bb. is ALA in Ba.. Bg. has more variation and in addition to the previous two differences, has at least one more difference, where ALA 215 &amp;lt;&amp;lt;ALA 215&amp;gt;&amp;gt; in Bb. is LYS, Bg. sometimes also has a deletion at Bb.’s ALA 208. LA-2 and OspA of Bb. form a tight interface when binding, and the longer GLN sidechain found in Ba. and Bg. is more difficult to accommodate, causing less binding. A chimera that was weakly recognized by LA-2 was made with parts of loop 1 from Bb., and loops 2 and 3 from Bg. 5 Recently, a different kind of chimera has been made which combined the proximal region of Bb. and distal region of Ba., and was able to successfully protect mice from both species. 8&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h3&amp;gt;List of Available Scenes for OspA&amp;lt;/h3&amp;gt;&lt;br /&gt;
&amp;lt;ul&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa_3loopscartoon/3&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Reset model&amp;lt;/scene&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops/4&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Three loops&amp;lt;/scene&amp;gt; in C-terminus (close up)&lt;br /&gt;
         &amp;lt;ul&amp;gt;&lt;br /&gt;
           &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-loop1/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Loop 1&amp;lt;/scene&amp;gt; (residues 203-220)&amp;lt;/li&amp;gt;&lt;br /&gt;
           &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-loop2/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Loop 2&amp;lt;/scene&amp;gt; (residues 224-233)&amp;lt;/li&amp;gt;&lt;br /&gt;
           &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-loop3/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Loop 3&amp;lt;/scene&amp;gt; (residues 246-257)&amp;lt;/li&amp;gt;&lt;br /&gt;
         &amp;lt;/ul&amp;gt;&lt;br /&gt;
     &amp;lt;/li&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-nor/3&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Three residues&amp;lt;/scene&amp;gt; in C-terminus (Ala208, Ala215 and Asn251 in &amp;lt;i&amp;gt;B. burgdorferi&amp;lt;/i&amp;gt;; also hides R-groups)&lt;br /&gt;
         &amp;lt;ul&amp;gt;&lt;br /&gt;
           &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-r/2&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Display R-groups&amp;lt;/scene&amp;gt; of Ala208, Ala215 and Asn251&amp;lt;/li&amp;gt;&lt;br /&gt;
         &amp;lt;/ul&amp;gt;&lt;br /&gt;
     &amp;lt;/li&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops3res/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Three loops and all three residues (with R-groups included)&amp;lt;/scene&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
&amp;lt;/ul&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;References&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;references /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;External Links&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;ul&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://www.who.int/ith/diseases/lyme/en/index.html World Health Organization: Lyme Disease]&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://www.ncbi.nlm.nih.gov/pubmedhealth/PMH0002296/ PubMed Health: Lyme Disease]&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://www.aldf.com/ American Lyme Disease Foundation]&lt;br /&gt;
&amp;lt;/ul&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;Proteopedia Page Contributors and Editors&amp;lt;/h2&amp;gt;&lt;br /&gt;
[http://proteopedia.org/wiki/index.php/User:Kimberly_Slade Kimberly Slade], [http://proteopedia.org/wiki/index.php/User:Cara_Lin Cara Lin], [http://proteopedia.org/wiki/index.php/User:Andrea_Mullen Andrea Mullen], [http://proteopedia.org/wiki/index.php/User:Jenny_Kim_Kim Jenny Kim Kim]&lt;br /&gt;
&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&lt;/div&gt;</summary>
		<author><name>Jenny Kim Kim</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=User:Marvin_O%27Neal/OspA&amp;diff=1388127</id>
		<title>User:Marvin O&#039;Neal/OspA</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=User:Marvin_O%27Neal/OspA&amp;diff=1388127"/>
		<updated>2012-05-04T18:50:08Z</updated>

		<summary type="html">&lt;p&gt;Jenny Kim Kim: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;Structure load=&amp;quot;1fj1&amp;quot; size=&amp;quot;350&amp;quot; frame=&amp;quot;true&amp;quot; align=&amp;quot;right&amp;quot; name=&amp;quot;OspA-secondary&amp;quot; caption=&amp;quot;Outer surface protein A (OspA) ([[1fj1|1FJ1]], chain F) showing secondary structures.&amp;quot; scene=&amp;quot;Studio:G2SecL03/Ospa_default/5&amp;quot;/&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
&amp;lt;b&amp;gt;Outer Surface Protein A (OspA)&amp;lt;/b&amp;gt; is a major lipoprotein found on the surface of [http://en.wikipedia.org/wiki/Spirochaete spirochetes] from the genus [http://en.wikipedia.org/wiki/Borrelia &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt;] and is comprised of 21 anti-parallel β-sheets and a single α-helix. OspA&#039;s expression is regulated at different points in time, from being downregulated during the tick&#039;s feeding process on its host to being upregulated in the host&#039;s cerebrospinal fluid (CSF) to induce inflammatory response, resulting in acute Lyme [http://en.wikipedia.org/wiki/Neuroborreliosis neuroborreliosis]. OspA has also been used as a vector in working towards the development of a vaccine for [http://en.wikipedia.org/wiki/Lyme_disease Lyme disease].&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;Introduction&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Lyme disease is caused by the spirochete &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; and spread via hard-bodied ticks belonging to the family [http://en.wikipedia.org/wiki/Ixodidae &amp;lt;i&amp;gt;Ixodidae&amp;lt;/i&amp;gt;]. The &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; spirochetes are motile, helical organisms have several lipoproteins exposed on the surfaces of their membranes that invoke a response from host immune systems. The predominant group of these is classified as the outer surface proteins (Osps). Both the pathogenesis of Lyme disease as well as the host&#039;s immune response stem from the effects of the spirochete&#039;s presence and involvement in the system.&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
The major strain of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; in the United States is [http://en.wikipedia.org/wiki/Borrelia_burgdorferi &amp;lt;i&amp;gt;Borrelia burgdorferi&amp;lt;/i&amp;gt;] &amp;lt;i&amp;gt;sensu stricto (Bb.)&amp;lt;/i&amp;gt;, with 20-100 cases of Lyme disease being reported per 100,000 people. In Europe, Lyme disease cases are more prevalent, with 100-130 diagnoses per 100,000 people, but are caused by the spirochetes [http://en.wikipedia.org/wiki/Borrelia_afzelii &amp;lt;i&amp;gt;Borrelia afzelii (Ba.)&amp;lt;/i&amp;gt;] and [http://en.wikipedia.org/wiki/Borrelia_garinii &amp;lt;i&amp;gt;Borrelia garinii (Bg.)&amp;lt;/i&amp;gt;] in addition to &amp;lt;i&amp;gt;B. burgdorferi&amp;lt;/i&amp;gt;.&amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;ding&amp;quot;&amp;gt;PMID: 11183781&amp;lt;/ref&amp;gt; &lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Lyme disease is a debilitating condition that begins with a characteristic bullseye rash known as an [http://en.wikipedia.org/wiki/Erythema_chronicum_migrans erythema migrans (EM)] as well as the development of lesions on other parts of the body, not just at the site of the tick&#039;s attachment to its host. Secondary stage symptoms include affecting the heart, joints, and both the central and peripheral nervous systems.  OspA is used in adhering to the tick&#039;s gut by binding with the tick receptor for OspA (TROSPA), a receptor necessary for the colonization of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; inside the tick. High levels of both OspA and TROSPA are found prior to feeding, but are downregulated once the feeding process begins in order to initiate transmission into the host.&amp;lt;ref name=&amp;quot;pal&amp;quot;&amp;gt;PMID: 15537536&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
While feeding, OspA is downregulated in order to evade an immune response from the incoming host blood into the gut, releasing the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; from the gut wall and migrating into the tick&#039;s salivary glands, thereby allowing it to enter the host through the bite. This is evidenced by the fact that patients with Lyme disease have been found to not possess OspA antibodies in the early stages of the disease.&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt; OspA is the protein most related to acute Lyme neuroborreliosis (LNB), the neurological manifestations of Lyme disease.  &lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Once inside the host, the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; has a great number of mechanisms available to actively suppress the host&#039;s immune system response and neutralize its effector mechanisms, such as the expression of another outer surface protein, OspC, which prevents susceptibility to the host&#039;s [http://en.wikipedia.org/wiki/Innate_immune_system innate immunity] and [http://en.wikipedia.org/wiki/Complement_system complement systems]. Additionally, &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; is capable of suppressing many of its surface proteins to reduce its detectability, but can also utilize protective means by temporarily expressing them when needed.&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;OspA&#039;s Role in Lyme Disease&amp;lt;/h2&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h3&amp;gt;Acute Lyme Neuroborreliosis (LNB)&amp;lt;/h3&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Acute Lyme Neuroborreliosis (LNB) is part of the second stage of Lyme disease in which the spirochete invades the peripheral and central nervous systems (CNS). Symptoms of LNB include: meningoradiculitis with inflammation of the nerve roots and [http://en.wikipedia.org/wiki/Radicular_pain radiculitis] (Bannwarth’s syndrome), lymphocytic meningitis, and cranial and [http://www.ncbi.nlm.nih.gov/pubmedhealth/PMH0001619/ peripheral neuritis]. In Europe, the strain predominantly found in the CSF of patients with Bannwarth&#039;s syndrome is &amp;lt;i&amp;gt;B. garinii&amp;lt;/i&amp;gt;. However, in the United States, Bannwarth&#039;s syndrome is rare and the most common manifestations of Lyme neuroborreliosis is [http://en.wikipedia.org/wiki/Meningitis meningitis], caused by &amp;lt;i&amp;gt;B. burgdorferi&amp;lt;/i&amp;gt;. The presence of OspA in the cerebrospinal fluid (CSF) is responsible for this complex inflammatory response in the brain that leads to the neuroborreliosis.&amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h3&amp;gt;Role in Inflammation&amp;lt;/h3&amp;gt;&lt;br /&gt;
&lt;br /&gt;
[[Image:G2L03-OspA-mechanism.jpg|thumb|300px|Mechanism of the host inflammatory response to OspA]]&lt;br /&gt;
&lt;br /&gt;
There are six steps involved in the host&#039;s inflammatory response to OspA: &amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt;&amp;lt;br&amp;gt;&lt;br /&gt;
&amp;lt;ol&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;When the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; enter the host’s CNS they encounter several different types of immune cells such as [http://en.wikipedia.org/wiki/Monocyte monocytes], [http://en.wikipedia.org/wiki/Macrophages macrophages], and [http://en.wikipedia.org/wiki/Dendritic_cells dendritic cells]. While in the CSF, outer surface protein A (OspA) is upregulated and it’s increased expression promotes recognition by a specific receptor on a monocyte.&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;The OspA-bound monocyte then releases proinflammatory [http://en.wikipedia.org/wiki/Cytokine cytokines] (i.e. [http://en.wikipedia.org/wiki/Interferon interferon]), as well as [http://en.wikipedia.org/wiki/Chemokine chemokines], such as [http://en.wikipedia.org/wiki/CXCL13 CXCL13]. In patients with LNB, there is an observed increase in the levels of these cytokines and chemokines in their CSF. The production of chemokines leads to the recruitment of other immune cells to the site of infection.&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://en.wikipedia.org/wiki/B_lymphocyte B-lymphocytes] respond to the new concentration gradient of CXCL13 between the blood and CSF and migrate into the CSF.&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;B-lymphocytes undergo [http://en.wikipedia.org/wiki/Receptor-mediated_endocytosis receptor-mediated endocytosis], consuming the OspA antigens present in the CSF, thereby triggering its activation. The B-lymphocytes then are able to differentiate and mature into  [http://en.wikipedia.org/wiki/Plasma_cells plasma cells].&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;The plasma cells create large quantities of anti-OspA antibodies specific to this strain of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; and release them into the CSF.&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;The anti-OspA antibodies will then bind to the OspA on the spirochete’s membrane, thus killing the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt;.&amp;lt;/li&amp;gt;&lt;br /&gt;
&amp;lt;/ol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
This process is two-sided in the sense that the OspA aids in the pathogenesis of new symptoms (neuroborreliosis) through the chemokine’s actions, as well as initiating the signaling cascade to destroy itself.&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;OspA Vaccination&amp;lt;/h2&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;Structure load=&amp;quot;1fj1&amp;quot; size=&amp;quot;350&amp;quot; frame=&amp;quot;true&amp;quot; align=&amp;quot;right&amp;quot; name=&amp;quot;complex&amp;quot; caption=&amp;quot;Outer surface protein A (OspA) in complex with the LA-2 Fab antibody ([[1fj1|1FJ1]]).&amp;quot; scene=&amp;quot;Studio:G2SecL03/Ospafab-orig/3&amp;quot;/&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Risk of developing Lyme disease can be mitigated by staying clear of areas with populations of ticks, wearing proper attire to minimize easily bitten areas of the body, and using insect repellents containing [http://en.wikipedia.org/wiki/DEET DEET] (N,N-diethy-m-toluamide). However, another effective means for prevention could be possible by using an outer surface protein from &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; in the creation of a vaccine.&amp;lt;ref name=&amp;quot;nigrovic&amp;quot;&amp;gt;PMID: 16893489&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
The membrane composition of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; is abundant in both OspA and OspB, and the two proteins share a 53% similarity in their primary sequences. Both OspA and OspB are expressed in the tick&#039;s gut and downregulated during feeding and aid in its survivability; however, OspA is overall less varied and reactive than OspB, which has greater variability.&amp;lt;ref name=&amp;quot;becker&amp;quot;&amp;gt;PMID: 15713683&amp;lt;/ref&amp;gt; The relatively conserved sequence of OspA thus lends itself better to study and application toward the development of a vaccine for a broader range of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; strains in the treatment of Lyme disease than that of OspB. The first vaccine used a purified recombinant form of OspA and functioned in blocking transmission of the spirochetes expressing OspA from tick to host during feeding, killing them while still attached to the tick&#039;s gut.&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;battisti&amp;quot;&amp;gt;PMID: 18779341&amp;lt;/ref&amp;gt; The vaccine, Lymerix, had shown 76% and 92% effectiveness in separate clinical trials in which patients were treated for two years following a three-dose schedule. However, the vaccination was suspended from use in 2002 when opponents claimed the [http://en.wikipedia.org/wiki/Immunoglobulin_G IgG antibodies] for OspA were associated with the onset of severe chronic arthritis, as well as other side effects affecting immunity.&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;plotkin&amp;quot;&amp;gt;PMID: 21217175&amp;lt;/ref&amp;gt;  This fact, in conjunction with the desire for a more widespread vaccine treating multiple strains of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt;, has spurred research towards a new vaccine.&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
To address this problem of international protection it would be helpful to create a chimera, mixing the OspA of different species. In order to do this the epitope of OspA should be studied. &amp;lt;scene name=&#039;Studio:G2SecL03/Ospafab-fab/3&#039; target=&amp;quot;complex&amp;quot;&amp;gt;LA-2&amp;lt;/scene&amp;gt; is a murine monoclonal antibody that &amp;lt;scene name=&#039;Studio:G2SecL03/Ospafab-interaction/3&#039; target=&amp;quot;complex&amp;quot;&amp;gt;binds strongly&amp;lt;/scene&amp;gt; to &amp;lt;scene name=&#039;Studio:G2SecL03/Ospafab-ospa/3&#039; target=&amp;quot;complex&amp;quot;&amp;gt;OspA&amp;lt;/scene&amp;gt;, and how effective a vaccine is correlated with LA-2 binding. 5&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;scene name=&#039;Studio:G2SecL03/Ospafab-orig/3&#039; target=&amp;quot;complex&amp;quot;&amp;gt;Reset model&amp;lt;/scene&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;Structure of OspA&amp;lt;/h2&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;Structure load=&amp;quot;1fj1&amp;quot; size=&amp;quot;350&amp;quot; frame=&amp;quot;true&amp;quot; align=&amp;quot;right&amp;quot; name=&amp;quot;OspA-manip&amp;quot; caption=&amp;quot;Outer surface protein A (OspA) ([[1fj1|1FJ1]], chain F)&amp;quot; scene=&amp;quot;Studio:G2SecL03/Ospa_3loopscartoon/3&amp;quot;/&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
OspA is made up of 273 residues over 21 anti-parallel β-sheets and a single α-helix. It&#039;s folded conformation is divided into three main sections: a N-terminus &amp;quot;sandwich,&amp;quot; a central region comprising of several β-sheets and a C-terminus &amp;quot;barrel&amp;quot; domain.&amp;lt;ref name=&amp;quot;ding&amp;quot;&amp;gt;PMID: 11183781&amp;lt;/ref&amp;gt; The folded regions at its ends are connected by a single β-sheet layer in the middle, giving the protein the unique shape of a dumbell.&amp;lt;ref name=&amp;quot;makabe&amp;quot;&amp;gt;PMID: 16823038&amp;lt;/ref&amp;gt; &lt;br /&gt;
&lt;br /&gt;
There are &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops/4&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;three loops&amp;lt;/scene&amp;gt; at the C-terminus of OspA that are important in binding with the LA-2 Fab antibody, whose interactions provide great insight into vaccine research and effectiveness. Within these loops, there are &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-nor/3&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;three residues&amp;lt;/scene&amp;gt; &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-r/2&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;(show residue R-groups)&amp;lt;/scene&amp;gt; where there are distinct variations between the different strains of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; and serve as potential targets for the creation of a broader vaccine.&amp;lt;ref name=&amp;quot;ding&amp;quot;&amp;gt;PMID: 11183781&amp;lt;/ref&amp;gt; &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops3res/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;(display both the three loops and three residues together)&amp;lt;/scene&amp;gt; &lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-loop1/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Loop 1&amp;lt;/scene&amp;gt;, (residues 203-220), is important in showing variation amongst the different strains of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; as well as being optimally conformed for binding without steric hindrance. &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-loop2/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Loop 2&amp;lt;/scene&amp;gt; (residues 224-233) and &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-loop3/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Loop 3&amp;lt;/scene&amp;gt; (residues 246-257) are more strongly conserved than Loop 1 but also help to show some variation amongst strains. The LA-2 Fab antibody readily recognizes OspA from &amp;lt;i&amp;gt;B. burgdorferi&amp;lt;/i&amp;gt;, but does not recognize that from &amp;lt;i&amp;gt;B. afzelii&amp;lt;/i&amp;gt; or &amp;lt;i&amp;gt;B. garinii&amp;lt;/i&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
Between Bb. and Ba. genetic sequences are generally invariant, but two residues change between the species, ALA 208 &amp;lt;&amp;lt;ALA 208&amp;gt;&amp;gt; in Bb. is GLN in Ba., and ASN 251 &amp;lt;&amp;lt;ASN 251&amp;gt;&amp;gt; in Bb. is ALA in Ba.. Bg. has more variation and in addition to the previous two differences, has at least one more difference, where ALA 215 &amp;lt;&amp;lt;ALA 215&amp;gt;&amp;gt; in Bb. is LYS, Bg. sometimes also has a deletion at Bb.’s ALA 208. LA-2 and OspA of Bb. form a tight interface when binding, and the longer GLN sidechain found in Ba. and Bg. is more difficult to accommodate, causing less binding. A chimera that was weakly recognized by LA-2 was made with parts of loop 1 from Bb., and loops 2 and 3 from Bg. 5 Recently, a different kind of chimera has been made which combined the proximal region of Bb. and distal region of Ba., and was able to successfully protect mice from both species. 8&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h3&amp;gt;List of Available Scenes for OspA&amp;lt;/h3&amp;gt;&lt;br /&gt;
&amp;lt;ul&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa_3loopscartoon/3&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Reset model&amp;lt;/scene&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops/4&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Three loops&amp;lt;/scene&amp;gt; in C-terminus (close up)&lt;br /&gt;
         &amp;lt;ul&amp;gt;&lt;br /&gt;
           &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-loop1/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Loop 1&amp;lt;/scene&amp;gt; (residues 203-220)&amp;lt;/li&amp;gt;&lt;br /&gt;
           &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-loop2/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Loop 2&amp;lt;/scene&amp;gt; (residues 224-233)&amp;lt;/li&amp;gt;&lt;br /&gt;
           &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-loop3/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Loop 3&amp;lt;/scene&amp;gt; (residues 246-257)&amp;lt;/li&amp;gt;&lt;br /&gt;
         &amp;lt;/ul&amp;gt;&lt;br /&gt;
     &amp;lt;/li&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-nor/3&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Three residues&amp;lt;/scene&amp;gt; in C-terminus (Ala208, Ala215 and Asn251 in &amp;lt;i&amp;gt;B. burgdorferi&amp;lt;/i&amp;gt;; also hides R-groups)&lt;br /&gt;
         &amp;lt;ul&amp;gt;&lt;br /&gt;
           &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-r/2&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Display R-groups&amp;lt;/scene&amp;gt; of Ala208, Ala215 and Asn251&amp;lt;/li&amp;gt;&lt;br /&gt;
         &amp;lt;/ul&amp;gt;&lt;br /&gt;
     &amp;lt;/li&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops3res/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Three loops and all three residues (with R-groups included)&amp;lt;/scene&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
&amp;lt;/ul&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;References&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;references /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;External Links&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;ul&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://www.who.int/ith/diseases/lyme/en/index.html World Health Organization: Lyme Disease]&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://www.ncbi.nlm.nih.gov/pubmedhealth/PMH0002296/ PubMed Health: Lyme Disease]&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://www.aldf.com/ American Lyme Disease Foundation]&lt;br /&gt;
&amp;lt;/ul&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;Proteopedia Page Contributors and Editors&amp;lt;/h2&amp;gt;&lt;br /&gt;
[http://proteopedia.org/wiki/index.php/User:Kimberly_Slade Kimberly Slade], [http://proteopedia.org/wiki/index.php/User:Cara_Lin Cara Lin], [http://proteopedia.org/wiki/index.php/User:Andrea_Mullen Andrea Mullen], [http://proteopedia.org/wiki/index.php/User:Jenny_Kim_Kim Jenny Kim Kim]&lt;br /&gt;
&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&lt;/div&gt;</summary>
		<author><name>Jenny Kim Kim</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=User:Marvin_O%27Neal/OspA&amp;diff=1388124</id>
		<title>User:Marvin O&#039;Neal/OspA</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=User:Marvin_O%27Neal/OspA&amp;diff=1388124"/>
		<updated>2012-05-04T18:48:25Z</updated>

		<summary type="html">&lt;p&gt;Jenny Kim Kim: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;Structure load=&amp;quot;1fj1&amp;quot; size=&amp;quot;350&amp;quot; frame=&amp;quot;true&amp;quot; align=&amp;quot;right&amp;quot; name=&amp;quot;OspA-secondary&amp;quot; caption=&amp;quot;Outer surface protein A (OspA) ([[1fj1|1FJ1]], chain F) showing secondary structures.&amp;quot; scene=&amp;quot;Studio:G2SecL03/Ospa_default/5&amp;quot;/&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
&amp;lt;b&amp;gt;Outer Surface Protein A (OspA)&amp;lt;/b&amp;gt; is a major lipoprotein found on the surface of [http://en.wikipedia.org/wiki/Spirochaete spirochetes] from the genus [http://en.wikipedia.org/wiki/Borrelia &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt;] and is comprised of 21 anti-parallel β-sheets and a single α-helix. OspA&#039;s expression is regulated at different points in time, from being downregulated during the tick&#039;s feeding process on its host to being upregulated in the host&#039;s cerebrospinal fluid (CSF) to induce inflammatory response, resulting in acute Lyme [http://en.wikipedia.org/wiki/Neuroborreliosis neuroborreliosis]. OspA has also been used as a vector in working towards the development of a vaccine for [http://en.wikipedia.org/wiki/Lyme_disease Lyme disease].&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;Introduction&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Lyme disease is caused by the spirochete &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; and spread via hard-bodied ticks belonging to the family [http://en.wikipedia.org/wiki/Ixodidae &amp;lt;i&amp;gt;Ixodidae&amp;lt;/i&amp;gt;]. The &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; spirochetes are motile, helical organisms have several lipoproteins exposed on the surfaces of their membranes that invoke a response from host immune systems. The predominant group of these is classified as the outer surface proteins (Osps). Both the pathogenesis of Lyme disease as well as the host&#039;s immune response stem from the effects of the spirochete&#039;s presence and involvement in the system.&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
The major strain of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; in the United States is [http://en.wikipedia.org/wiki/Borrelia_burgdorferi &amp;lt;i&amp;gt;Borrelia burgdorferi&amp;lt;/i&amp;gt;] &amp;lt;i&amp;gt;sensu stricto (Bb.)&amp;lt;/i&amp;gt;, with 20-100 cases of Lyme disease being reported per 100,000 people. In Europe, Lyme disease cases are more prevalent, with 100-130 diagnoses per 100,000 people, but are caused by the spirochetes [http://en.wikipedia.org/wiki/Borrelia_afzelii &amp;lt;i&amp;gt;Borrelia afzelii (Ba.)&amp;lt;/i&amp;gt;] and [http://en.wikipedia.org/wiki/Borrelia_garinii &amp;lt;i&amp;gt;Borrelia garinii (Bg.)&amp;lt;/i&amp;gt;] in addition to &amp;lt;i&amp;gt;B. burgdorferi&amp;lt;/i&amp;gt;.&amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;ding&amp;quot;&amp;gt;PMID: 11183781&amp;lt;/ref&amp;gt; &lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Lyme disease is a debilitating condition that begins with a characteristic bullseye rash known as an [http://en.wikipedia.org/wiki/Erythema_chronicum_migrans erythema migrans (EM)] as well as the development of lesions on other parts of the body, not just at the site of the tick&#039;s attachment to its host. Secondary stage symptoms include affecting the heart, joints, and both the central and peripheral nervous systems.  OspA is used in adhering to the tick&#039;s gut by binding with the tick receptor for OspA (TROSPA), a receptor necessary for the colonization of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; inside the tick. High levels of both OspA and TROSPA are found prior to feeding, but are downregulated once the feeding process begins in order to initiate transmission into the host.&amp;lt;ref name=&amp;quot;pal&amp;quot;&amp;gt;PMID: 15537536&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
While feeding, OspA is downregulated in order to evade an immune response from the incoming host blood into the gut, releasing the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; from the gut wall and migrating into the tick&#039;s salivary glands, thereby allowing it to enter the host through the bite. This is evidenced by the fact that patients with Lyme disease have been found to not possess OspA antibodies in the early stages of the disease.&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt; OspA is the protein most related to acute Lyme neuroborreliosis (LNB), the neurological manifestations of Lyme disease.  &lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Once inside the host, the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; has a great number of mechanisms available to actively suppress the host&#039;s immune system response and neutralize its effector mechanisms, such as the expression of another outer surface protein, OspC, which prevents susceptibility to the host&#039;s [http://en.wikipedia.org/wiki/Innate_immune_system innate immunity] and [http://en.wikipedia.org/wiki/Complement_system complement systems]. Additionally, &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; is capable of suppressing many of its surface proteins to reduce its detectability, but can also utilize protective means by temporarily expressing them when needed.&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;OspA&#039;s Role in Lyme Disease&amp;lt;/h2&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h3&amp;gt;Acute Lyme Neuroborreliosis (LNB)&amp;lt;/h3&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Acute Lyme Neuroborreliosis (LNB) is part of the second stage of Lyme disease in which the spirochete invades the peripheral and central nervous systems (CNS). Symptoms of LNB include: meningoradiculitis with inflammation of the nerve roots and [http://en.wikipedia.org/wiki/Radicular_pain radiculitis] (Bannwarth’s syndrome), lymphocytic meningitis, and cranial and [http://www.ncbi.nlm.nih.gov/pubmedhealth/PMH0001619/ peripheral neuritis]. In Europe, the strain predominantly found in the CSF of patients with Bannwarth&#039;s syndrome is &amp;lt;i&amp;gt;B. garinii&amp;lt;/i&amp;gt;. However, in the United States, Bannwarth&#039;s syndrome is rare and the most common manifestations of Lyme neuroborreliosis is [http://en.wikipedia.org/wiki/Meningitis meningitis], caused by &amp;lt;i&amp;gt;B. burgdorferi&amp;lt;/i&amp;gt;. The presence of OspA in the cerebrospinal fluid (CSF) is responsible for this complex inflammatory response in the brain that leads to the neuroborreliosis.&amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h3&amp;gt;Role in Inflammation&amp;lt;/h3&amp;gt;&lt;br /&gt;
&lt;br /&gt;
[[Image:G2L03-OspA-mechanism.jpg|thumb|300px|Mechanism of the host inflammatory response to OspA]]&lt;br /&gt;
&lt;br /&gt;
There are six steps involved in the host&#039;s inflammatory response to OspA: &amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt;&amp;lt;br&amp;gt;&lt;br /&gt;
&amp;lt;ol&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;When the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; enter the host’s CNS they encounter several different types of immune cells such as [http://en.wikipedia.org/wiki/Monocyte monocytes], [http://en.wikipedia.org/wiki/Macrophages macrophages], and [http://en.wikipedia.org/wiki/Dendritic_cells dendritic cells]. While in the CSF, outer surface protein A (OspA) is upregulated and it’s increased expression promotes recognition by a specific receptor on a monocyte.&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;The OspA-bound monocyte then releases proinflammatory [http://en.wikipedia.org/wiki/Cytokine cytokines] (i.e. [http://en.wikipedia.org/wiki/Interferon interferon]), as well as [http://en.wikipedia.org/wiki/Chemokine chemokines], such as [http://en.wikipedia.org/wiki/CXCL13 CXCL13]. In patients with LNB, there is an observed increase in the levels of these cytokines and chemokines in their CSF. The production of chemokines leads to the recruitment of other immune cells to the site of infection.&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://en.wikipedia.org/wiki/B_lymphocyte B-lymphocytes] respond to the new concentration gradient of CXCL13 between the blood and CSF and migrate into the CSF.&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;B-lymphocytes undergo [http://en.wikipedia.org/wiki/Receptor-mediated_endocytosis receptor-mediated endocytosis], consuming the OspA antigens present in the CSF, thereby triggering its activation. The B-lymphocytes then are able to differentiate and mature into  [http://en.wikipedia.org/wiki/Plasma_cells plasma cells].&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;The plasma cells create large quantities of anti-OspA antibodies specific to this strain of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; and release them into the CSF.&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;The anti-OspA antibodies will then bind to the OspA on the spirochete’s membrane, thus killing the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt;.&amp;lt;/li&amp;gt;&lt;br /&gt;
&amp;lt;/ol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
This process is two-sided in the sense that the OspA aids in the pathogenesis of new symptoms (neuroborreliosis) through the chemokine’s actions, as well as initiating the signaling cascade to destroy itself.&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;OspA Vaccination&amp;lt;/h2&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;Structure load=&amp;quot;1fj1&amp;quot; size=&amp;quot;350&amp;quot; frame=&amp;quot;true&amp;quot; align=&amp;quot;right&amp;quot; name=&amp;quot;complex&amp;quot; caption=&amp;quot;Outer surface protein A (OspA) in complex with the LA-2 Fab antibody ([[1fj1|1FJ1]]).&amp;quot; scene=&amp;quot;Studio:G2SecL03/Ospafab-orig/3&amp;quot;/&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Risk of developing Lyme disease can be mitigated by staying clear of areas with populations of ticks, wearing proper attire to minimize easily bitten areas of the body, and using insect repellents containing [http://en.wikipedia.org/wiki/DEET DEET] (N,N-diethy-m-toluamide). However, another effective means for prevention could be possible by using an outer surface protein from &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; in the creation of a vaccine.&amp;lt;ref name=&amp;quot;nigrovic&amp;quot;&amp;gt;PMID: 16893489&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
The membrane composition of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; is abundant in both OspA and OspB, and the two proteins share a 53% similarity in their primary sequences. Both OspA and OspB are expressed in the tick&#039;s gut and downregulated during feeding and aid in its survivability; however, OspA is overall less varied and reactive than OspB, which has greater variability.&amp;lt;ref name=&amp;quot;becker&amp;quot;&amp;gt;PMID: 15713683&amp;lt;/ref&amp;gt; The relatively conserved sequence of OspA thus lends itself better to study and application toward the development of a vaccine for a broader range of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; strains in the treatment of Lyme disease than that of OspB. The first vaccine used a purified recombinant form of OspA and functioned in blocking transmission of the spirochetes expressing OspA from tick to host during feeding, killing them while still attached to the tick&#039;s gut.&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;battisti&amp;quot;&amp;gt;PMID: 18779341&amp;lt;/ref&amp;gt; The vaccine, Lymerix, had shown 76% and 92% effectiveness in separate clinical trials in which patients were treated for two years following a three-dose schedule. However, the vaccination was suspended from use in 2002 when opponents claimed the [http://en.wikipedia.org/wiki/Immunoglobulin_G IgG antibodies] for OspA were associated with the onset of severe chronic arthritis, as well as other side effects affecting immunity.&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;plotkin&amp;quot;&amp;gt;PMID: 21217175&amp;lt;/ref&amp;gt;  This fact, in conjunction with the desire for a more widespread vaccine treating multiple strains of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt;, has spurred research towards a new vaccine.&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
To address this problem of international protection it would be helpful to create a chimera, mixing the OspA of different species. In order to do this the epitope of OspA should be studied. &amp;lt;scene name=&#039;Studio:G2SecL03/Ospafab-fab/3&#039; target=&amp;quot;complex&amp;quot;&amp;gt;LA-2&amp;lt;/scene&amp;gt; is a murine monoclonal antibody that &amp;lt;scene name=&#039;Studio:G2SecL03/Ospafab-interaction/3&#039; target=&amp;quot;complex&amp;quot;&amp;gt;binds strongly&amp;lt;/scene&amp;gt; to &amp;lt;scene name=&#039;Studio:G2SecL03/Ospafab-ospa/3&#039; target=&amp;quot;complex&amp;quot;&amp;gt;OspA&amp;lt;/scene&amp;gt;, and how effective a vaccine is correlated with LA-2 binding. 5&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;scene name=&#039;Studio:G2SecL03/Ospafab-orig/3&#039; target=&amp;quot;complex&amp;quot;&amp;gt;Reset model&amp;lt;/scene&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;Structure of OspA&amp;lt;/h2&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;Structure load=&amp;quot;1fj1&amp;quot; size=&amp;quot;350&amp;quot; frame=&amp;quot;true&amp;quot; align=&amp;quot;right&amp;quot; name=&amp;quot;OspA-manip&amp;quot; caption=&amp;quot;Outer surface protein A (OspA) ([[1fj1|1FJ1]], chain F)&amp;quot; scene=&amp;quot;Studio:G2SecL03/Ospa_3loopscartoon/3&amp;quot;/&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
OspA is made up of 273 residues over 21 anti-parallel β-sheets and a single α-helix. It&#039;s folded conformation is divided into three main sections: a N-terminus &amp;quot;sandwich,&amp;quot; a central region comprising of several β-sheets and a C-terminus &amp;quot;barrel&amp;quot; domain.&amp;lt;ref name=&amp;quot;ding&amp;quot;&amp;gt;PMID: 11183781&amp;lt;/ref&amp;gt; The folded regions at its ends are connected by a single β-sheet layer in the middle, giving the protein the unique shape of a dumbell.&amp;lt;ref name=&amp;quot;makabe&amp;quot;&amp;gt;PMID: 16823038&amp;lt;/ref&amp;gt; &lt;br /&gt;
&lt;br /&gt;
There are &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops/4&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;three loops&amp;lt;/scene&amp;gt; at the C-terminus of OspA that are important in binding with the LA-2 Fab antibody, whose interactions provide great insight into vaccine research and effectiveness. Within these loops, there are &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-nor/3&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;three residues&amp;lt;/scene&amp;gt; &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-r/2&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;(show residue R-groups)&amp;lt;/scene&amp;gt; where there are distinct variations between the different strains of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; and serve as potential targets for the creation of a broader vaccine.&amp;lt;ref name=&amp;quot;ding&amp;quot;&amp;gt;PMID: 11183781&amp;lt;/ref&amp;gt; &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops3res/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;(display both the three loops and three residues together)&amp;lt;/scene&amp;gt; &lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-loop1/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Loop 1&amp;lt;/scene&amp;gt;, (residues 203-220), is important in showing variation amongst the different strains of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; as well as being optimally conformed for binding without steric hindrance. &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-loop2/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Loop 2&amp;lt;/scene&amp;gt; (residues 224-233) and &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-loop3/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Loop 3&amp;lt;/scene&amp;gt; (residues 246-257) are more strongly conserved than Loop 1 but also help to show some variation amongst strains. The LA-2 Fab antibody readily recognizes OspA from &amp;lt;i&amp;gt;B. burgdorferi&amp;lt;/i&amp;gt;, but does not recognize that from &amp;lt;i&amp;gt;B. afzelii&amp;lt;/i&amp;gt; or &amp;lt;i&amp;gt;B. garinii&amp;lt;/i&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
Between Bb. and Ba. genetic sequences are generally invariant, but two residues change between the species, ALA 208 &amp;lt;&amp;lt;ALA 208&amp;gt;&amp;gt; in Bb. is GLN in Ba., and ASN 251 &amp;lt;&amp;lt;ASN 251&amp;gt;&amp;gt; in Bb. is ALA in Ba.. Bg. has more variation and in addition to the previous two differences, has at least one more difference, where ALA 215 &amp;lt;&amp;lt;ALA 215&amp;gt;&amp;gt; in Bb. is LYS, Bg. sometimes also has a deletion at Bb.’s ALA 208. LA-2 and OspA of Bb. form a tight interface when binding, and the longer GLN sidechain found in Ba. and Bg. is more difficult to accommodate, causing less binding. A chimera that was weakly recognized by LA-2 was made with parts of loop 1 from Bb., and loops 2 and 3 from Bg. 5 Recently, a different kind of chimera has been made which combined the proximal region of Bb. and distal region of Ba., and was able to successfully protect mice from both species. 8&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h3&amp;gt;List of Available Scenes for OspA&amp;lt;/h3&amp;gt;&lt;br /&gt;
&amp;lt;ul&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa_3loopscartoon/3&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Reset model&amp;lt;/scene&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops/4&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Three loops&amp;lt;/scene&amp;gt; in C-terminus (close up)&lt;br /&gt;
         &amp;lt;ul&amp;gt;&lt;br /&gt;
           &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-loop1/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Loop 1&amp;lt;/scene&amp;gt; (residues 203-220)&amp;lt;/li&amp;gt;&lt;br /&gt;
           &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-loop2/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Loop 2&amp;lt;/scene&amp;gt; (residues 224-233)&amp;lt;/li&amp;gt;&lt;br /&gt;
           &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-loop3/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Loop 3&amp;lt;/scene&amp;gt; (residues 246-257)&amp;lt;/li&amp;gt;&lt;br /&gt;
         &amp;lt;/ul&amp;gt;&lt;br /&gt;
     &amp;lt;/li&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-nor/3&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Three residues&amp;lt;/scene&amp;gt; in C-terminus (Ala208, Ala215 and Asn251 in &amp;lt;i&amp;gt;B. burgdorferi&amp;lt;/i&amp;gt;; also hides R-groups)&lt;br /&gt;
         &amp;lt;ul&amp;gt;&lt;br /&gt;
           &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-r/2&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Display R-groups&amp;lt;/scene&amp;gt; of Ala208, Ala215 and Asn251&amp;lt;/li&amp;gt;&lt;br /&gt;
         &amp;lt;/ul&amp;gt;&lt;br /&gt;
     &amp;lt;/li&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops3res/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Three loops and all three residues (with R-groups included)&amp;lt;/scene&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
&amp;lt;/ul&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;References&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;references /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;External Links&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;ul&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://www.who.int/ith/diseases/lyme/en/index.html World Health Organization: Lyme Disease]&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://www.ncbi.nlm.nih.gov/pubmedhealth/PMH0002296/ PubMed Health: Lyme Disease]&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://www.aldf.com/ American Lyme Disease Foundation]&lt;br /&gt;
&amp;lt;/ul&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;Proteopedia Page Contributors and Editors&amp;lt;/h2&amp;gt;&lt;br /&gt;
[http://proteopedia.org/wiki/index.php/User:Kimberly_Slade Kimberly Slade], [http://proteopedia.org/wiki/index.php/User:Cara_Lin Cara Lin], [http://proteopedia.org/wiki/index.php/User:Andrea_Mullen Andrea Mullen], [http://proteopedia.org/wiki/index.php/User:Jenny_Kim_Kim Jenny Kim Kim]&lt;br /&gt;
&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&lt;/div&gt;</summary>
		<author><name>Jenny Kim Kim</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=User:Marvin_O%27Neal/OspA&amp;diff=1388069</id>
		<title>User:Marvin O&#039;Neal/OspA</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=User:Marvin_O%27Neal/OspA&amp;diff=1388069"/>
		<updated>2012-05-04T17:31:36Z</updated>

		<summary type="html">&lt;p&gt;Jenny Kim Kim: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;Structure load=&amp;quot;1fj1&amp;quot; size=&amp;quot;350&amp;quot; frame=&amp;quot;true&amp;quot; align=&amp;quot;right&amp;quot; name=&amp;quot;OspA-secondary&amp;quot; caption=&amp;quot;Outer surface protein A (OspA) ([[1fj1|1FJ1]], chain F) showing secondary structures.&amp;quot; scene=&amp;quot;Studio:G2SecL03/Ospa_default/5&amp;quot;/&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
&amp;lt;b&amp;gt;Outer Surface Protein A (OspA)&amp;lt;/b&amp;gt; is a major lipoprotein found on the surface of [http://en.wikipedia.org/wiki/Spirochaete spirochetes] from the genus [http://en.wikipedia.org/wiki/Borrelia &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt;] and is comprised of 21 anti-parallel β-sheets and a single α-helix. OspA&#039;s expression is regulated at different points in time, from being downregulated during the tick&#039;s feeding process on its host to being upregulated in the host&#039;s cerebrospinal fluid (CSF) to induce inflammatory response, resulting in acute Lyme [http://en.wikipedia.org/wiki/Neuroborreliosis neuroborreliosis]. OspA has also been used as a vector in working towards the development of a vaccine for [http://en.wikipedia.org/wiki/Lyme_disease Lyme disease].&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;Introduction&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Lyme disease is caused by the spirochete &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; and spread via hard-bodied ticks belonging to the family [http://en.wikipedia.org/wiki/Ixodidae &amp;lt;i&amp;gt;Ixodidae&amp;lt;/i&amp;gt;]. The &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; spirochetes are motile, helical organisms have several lipoproteins exposed on the surfaces of their membranes that invoke a response from host immune systems. The predominant group of these is classified as the outer surface proteins (Osps). Both the pathogenesis of Lyme disease as well as the host&#039;s immune response stem from the effects of the spirochete&#039;s presence and involvement in the system.&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
The major strain of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; in the United States is [http://en.wikipedia.org/wiki/Borrelia_burgdorferi &amp;lt;i&amp;gt;Borrelia burgdorferi&amp;lt;/i&amp;gt;] &amp;lt;i&amp;gt;sensu stricto (Bb.)&amp;lt;/i&amp;gt;, with 20-100 cases of Lyme disease being reported per 100,000 people. In Europe, Lyme disease cases are more prevalent, with 100-130 diagnoses per 100,000 people, but are caused by the spirochetes [http://en.wikipedia.org/wiki/Borrelia_afzelii &amp;lt;i&amp;gt;Borrelia afzelii (Ba.)&amp;lt;/i&amp;gt;] and [http://en.wikipedia.org/wiki/Borrelia_garinii &amp;lt;i&amp;gt;Borrelia garinii (Bg.)&amp;lt;/i&amp;gt;] in addition to &amp;lt;i&amp;gt;B. burgdorferi&amp;lt;/i&amp;gt;.&amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;ding&amp;quot;&amp;gt;PMID: 11183781&amp;lt;/ref&amp;gt; &lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Lyme disease is a debilitating condition that begins with a characteristic bullseye rash known as an [http://en.wikipedia.org/wiki/Erythema_chronicum_migrans erythema migrans (EM)] as well as the development of lesions on other parts of the body, not just at the site of the tick&#039;s attachment to its host. Secondary stage symptoms include affecting the heart, joints, and both the central and peripheral nervous systems. &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; has two major outer surface lipoproteins that are involved in Lyme disease: OspA and OspB. OspA is used in adhering to the tick&#039;s gut by binding with the tick receptor (TROSPA) &lt;br /&gt;
&lt;br /&gt;
During feeding, OspA is downregulated in order to evade an immune response from the incoming host blood into the gut, releasing the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; from the gut wall and migrating into the tick&#039;s salivary glands, thereby allowing it to enter the host through the bite. This is evidenced by the fact that patients with Lyme disease have been found to not possess OspA antibodies in the early stages of the disease.&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt; OspA is the protein most related to acute Lyme neuroborreliosis (LNB), the neurological manifestations of Lyme disease.  &lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Once inside the host, the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; has a great number of mechanisms available to actively suppress the host&#039;s immune system response and neutralize its effector mechanisms, such as the expression of another outer surface protein, OspC, which prevents susceptibility to the host&#039;s [http://en.wikipedia.org/wiki/Innate_immune_system innate immunity] and [http://en.wikipedia.org/wiki/Complement_system complement systems]. Additionally, &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; is capable of suppressing many of its surface proteins to reduce its detectability, but can also utilize protective means by temporarily expressing them when needed.&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;OspA &amp;amp; Lyme Disease&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Acute Lyme Neuroborreliosis (LNB) is part of the second stage of Lyme disease in which the spirochete invades the peripheral and central nervous systems (CNS). Symptoms of LNB include: Bannwarth’s Syndrome, Lymphocytic Meningitis, and cranial and [http://www.ncbi.nlm.nih.gov/pubmedhealth/PMH0001619/ peripheral neuritis]. The presence of OspA in the cerebrospinal fluid (CSF) is responsible for this complex inflammatory response in the brain that leads to the neuroborreliosis.&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
[[Image:G2L03-OspA-mechanism.jpg|thumb|300px|Mechanism of the host inflammatory response to OspA]]&lt;br /&gt;
&lt;br /&gt;
There are six steps involved in the host&#039;s inflammatory response to OspA: &amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt;&amp;lt;br&amp;gt;&lt;br /&gt;
&amp;lt;ol&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;When the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; enter the host’s CNS they encounter several different types of immune cells such as [http://en.wikipedia.org/wiki/Monocyte monocytes], [http://en.wikipedia.org/wiki/Macrophages macrophages], and [http://en.wikipedia.org/wiki/Dendritic_cells dendritic cells]. While in the CSF, outer surface protein A (OspA) is upregulated and it’s increased expression promotes recognition by a specific receptor on a monocyte.&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;The OspA-bound monocyte then releases proinflammatory [http://en.wikipedia.org/wiki/Cytokine cytokines] (i.e. [http://en.wikipedia.org/wiki/Interferon interferon]), as well as [http://en.wikipedia.org/wiki/Chemokine chemokines], such as [http://en.wikipedia.org/wiki/CXCL13 CXCL13]. In patients with LNB, there is an observed increase in the levels of these cytokines and chemokines in their CSF. The production of chemokines leads to the recruitment of other immune cells to the site of infection.&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://en.wikipedia.org/wiki/B_lymphocyte B-lymphocytes] respond to the new concentration gradient of CXCL13 between the blood and CSF and migrate into the CSF.&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;B-lymphocytes undergo [http://en.wikipedia.org/wiki/Receptor-mediated_endocytosis receptor-mediated endocytosis], consuming the OspA antigens present in the CSF, thereby triggering its activation. The B-lymphocytes then are able to differentiate and mature into  [http://en.wikipedia.org/wiki/Plasma_cells plasma cells].&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;The plasma cells create large quantities of anti-OspA antibodies specific to this strain of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; and release them into the CSF.&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;The anti-OspA antibodies will then bind to the OspA on the spirochete’s membrane, thus killing the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt;.&amp;lt;/li&amp;gt;&lt;br /&gt;
&amp;lt;/ol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
This process is two-sided in the sense that the OspA aids in the pathogenesis of new symptoms (neuroborreliosis) through the chemokine’s actions, as well as initiating the signaling cascade to destroy itself.&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;OspA Vaccination&amp;lt;/h2&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;Structure load=&amp;quot;1fj1&amp;quot; size=&amp;quot;350&amp;quot; frame=&amp;quot;true&amp;quot; align=&amp;quot;right&amp;quot; name=&amp;quot;complex&amp;quot; caption=&amp;quot;Outer surface protein A (OspA) in complex with the LA-2 Fab antibody ([[1fj1|1FJ1]]).&amp;quot; scene=&amp;quot;Studio:G2SecL03/Ospafab-orig/3&amp;quot;/&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Risk of developing Lyme disease can be mitigated by staying clear of areas with populations of ticks, wearing proper attire to minimize easily bitten areas of the body, and using insect repellents containing [http://en.wikipedia.org/wiki/DEET DEET] (N,N-diethy-m-toluamide). However, another effective means for prevention could be possible by using an outer surface protein from &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; in the creation of a vaccine.&amp;lt;ref name=&amp;quot;nigrovic&amp;quot;&amp;gt;PMID: 16893489&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
The membrane composition of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; is abundant in both OspA and OspB, and the two proteins share a 53% similarity in their primary sequences. Both OspA and OspB are expressed in the tick&#039;s gut and downregulated during feeding and aid in its survivability; however, OspA is overall less varied and reactive than OspB, which has greater variability.&amp;lt;ref name=&amp;quot;becker&amp;quot;&amp;gt;PMID: 15713683&amp;lt;/ref&amp;gt; The relatively conserved sequence of OspA thus lends itself better to study and application toward the development of a vaccine for a broader range of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; strains in the treatment of Lyme disease than that of OspB. The first vaccine used a purified recombinant form of OspA and functioned in blocking transmission of the spirochetes expressing OspA from tick to host during feeding, killing them while still attached to the tick&#039;s gut.&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;battisti&amp;quot;&amp;gt;PMID: 18779341&amp;lt;/ref&amp;gt; The vaccine, Lymerix, had shown 76% and 92% effectiveness in separate clinical trials in which patients were treated for two years following a three-dose schedule. However, the vaccination was suspended from use in 2002 when opponents claimed the [http://en.wikipedia.org/wiki/Immunoglobulin_G IgG antibodies] for OspA were associated with the onset of severe chronic arthritis, as well as other side effects affecting immunity.&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;plotkin&amp;quot;&amp;gt;PMID: 21217175&amp;lt;/ref&amp;gt;  This fact, in conjunction with the desire for a more widespread vaccine treating multiple strains of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt;, has spurred research towards a new vaccine.&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
To address this problem of international protection it would be helpful to create a chimera, mixing the OspA of different species. In order to do this the epitope of OspA should be studied. &amp;lt;scene name=&#039;Studio:G2SecL03/Ospafab-fab/3&#039; target=&amp;quot;complex&amp;quot;&amp;gt;LA-2&amp;lt;/scene&amp;gt; is a murine monoclonal antibody that &amp;lt;scene name=&#039;Studio:G2SecL03/Ospafab-interaction/3&#039; target=&amp;quot;complex&amp;quot;&amp;gt;binds strongly&amp;lt;/scene&amp;gt; to &amp;lt;scene name=&#039;Studio:G2SecL03/Ospafab-ospa/3&#039; target=&amp;quot;complex&amp;quot;&amp;gt;OspA&amp;lt;/scene&amp;gt;, and how effective a vaccine is correlated with LA-2 binding. 5&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;scene name=&#039;Studio:G2SecL03/Ospafab-orig/3&#039; target=&amp;quot;complex&amp;quot;&amp;gt;Reset model&amp;lt;/scene&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;Structure of OspA&amp;lt;/h2&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;Structure load=&amp;quot;1fj1&amp;quot; size=&amp;quot;350&amp;quot; frame=&amp;quot;true&amp;quot; align=&amp;quot;right&amp;quot; name=&amp;quot;OspA-manip&amp;quot; caption=&amp;quot;Outer surface protein A (OspA) ([[1fj1|1FJ1]], chain F)&amp;quot; scene=&amp;quot;Studio:G2SecL03/Ospa_3loopscartoon/3&amp;quot;/&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
OspA is made up of 273 residues over 21 anti-parallel β-sheets and a single α-helix. It&#039;s folded conformation is divided into three main sections: a N-terminus &amp;quot;sandwich,&amp;quot; a central region comprising of several β-sheets and a C-terminus &amp;quot;barrel&amp;quot; domain.&amp;lt;ref name=&amp;quot;ding&amp;quot;&amp;gt;PMID: 11183781&amp;lt;/ref&amp;gt; The folded regions at its ends are connected by a single β-sheet layer in the middle, giving the protein the unique shape of a dumbell.&amp;lt;ref name=&amp;quot;makabe&amp;quot;&amp;gt;PMID: 16823038&amp;lt;/ref&amp;gt; &lt;br /&gt;
&lt;br /&gt;
There are &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops/4&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;three loops&amp;lt;/scene&amp;gt; at the C-terminus of OspA that are important in binding with the LA-2 Fab antibody, whose interactions provide great insight into vaccine research and effectiveness. Within these loops, there are &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-nor/3&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;three residues&amp;lt;/scene&amp;gt; &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-r/2&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;(show residue R-groups)&amp;lt;/scene&amp;gt; where there are distinct variations between the different strains of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; and serve as potential targets for the creation of a broader vaccine.&amp;lt;ref name=&amp;quot;ding&amp;quot;&amp;gt;PMID: 11183781&amp;lt;/ref&amp;gt; &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops3res/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;(display both the three loops and three residues together)&amp;lt;/scene&amp;gt; &lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-loop1/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Loop 1&amp;lt;/scene&amp;gt;, (residues 203-220), is important in showing variation amongst the different strains of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; as well as being optimally conformed for binding without steric hindrance. &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-loop2/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Loop 2&amp;lt;/scene&amp;gt; (residues 224-233) and &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-loop3/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Loop 3&amp;lt;/scene&amp;gt; (residues 246-257) are more strongly conserved than Loop 1 but also help to show some variation amongst strains. The LA-2 Fab antibody readily recognizes OspA from &amp;lt;i&amp;gt;B. burgdorferi&amp;lt;/i&amp;gt;, but does not recognize that from &amp;lt;i&amp;gt;B. afzelii&amp;lt;/i&amp;gt; or &amp;lt;i&amp;gt;B. garinii&amp;lt;/i&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
Between Bb. and Ba. genetic sequences are generally invariant, but two residues change between the species, ALA 208 &amp;lt;&amp;lt;ALA 208&amp;gt;&amp;gt; in Bb. is GLN in Ba., and ASN 251 &amp;lt;&amp;lt;ASN 251&amp;gt;&amp;gt; in Bb. is ALA in Ba.. Bg. has more variation and in addition to the previous two differences, has at least one more difference, where ALA 215 &amp;lt;&amp;lt;ALA 215&amp;gt;&amp;gt; in Bb. is LYS, Bg. sometimes also has a deletion at Bb.’s ALA 208. LA-2 and OspA of Bb. form a tight interface when binding, and the longer GLN sidechain found in Ba. and Bg. is more difficult to accommodate, causing less binding. A chimera that was weakly recognized by LA-2 was made with parts of loop 1 from Bb., and loops 2 and 3 from Bg. 5 Recently, a different kind of chimera has been made which combined the proximal region of Bb. and distal region of Ba., and was able to successfully protect mice from both species. 8&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h3&amp;gt;List of Available Scenes for OspA&amp;lt;/h3&amp;gt;&lt;br /&gt;
&amp;lt;ul&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa_3loopscartoon/3&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Reset model&amp;lt;/scene&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops/4&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Three loops&amp;lt;/scene&amp;gt; in C-terminus (close up)&lt;br /&gt;
         &amp;lt;ul&amp;gt;&lt;br /&gt;
           &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-loop1/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Loop 1&amp;lt;/scene&amp;gt; (residues 203-220)&amp;lt;/li&amp;gt;&lt;br /&gt;
           &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-loop2/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Loop 2&amp;lt;/scene&amp;gt; (residues 224-233)&amp;lt;/li&amp;gt;&lt;br /&gt;
           &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-loop3/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Loop 3&amp;lt;/scene&amp;gt; (residues 246-257)&amp;lt;/li&amp;gt;&lt;br /&gt;
         &amp;lt;/ul&amp;gt;&lt;br /&gt;
     &amp;lt;/li&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-nor/3&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Three residues&amp;lt;/scene&amp;gt; in C-terminus (Ala208, Ala215 and Asn251 in &amp;lt;i&amp;gt;B. burgdorferi&amp;lt;/i&amp;gt;; also hides R-groups)&lt;br /&gt;
         &amp;lt;ul&amp;gt;&lt;br /&gt;
           &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-r/2&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Display R-groups&amp;lt;/scene&amp;gt; of Ala208, Ala215 and Asn251&amp;lt;/li&amp;gt;&lt;br /&gt;
         &amp;lt;/ul&amp;gt;&lt;br /&gt;
     &amp;lt;/li&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops3res/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Three loops and all three residues (with R-groups included)&amp;lt;/scene&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
&amp;lt;/ul&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;References&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;references /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;External Links&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;ul&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://www.who.int/ith/diseases/lyme/en/index.html World Health Organization: Lyme Disease]&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://www.ncbi.nlm.nih.gov/pubmedhealth/PMH0002296/ PubMed Health: Lyme Disease]&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://www.aldf.com/ American Lyme Disease Foundation]&lt;br /&gt;
&amp;lt;/ul&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;Proteopedia Page Contributors and Editors&amp;lt;/h2&amp;gt;&lt;br /&gt;
[http://proteopedia.org/wiki/index.php/User:Kimberly_Slade Kimberly Slade], [http://proteopedia.org/wiki/index.php/User:Cara_Lin Cara Lin], [http://proteopedia.org/wiki/index.php/User:Andrea_Mullen Andrea Mullen], [http://proteopedia.org/wiki/index.php/User:Jenny_Kim_Kim Jenny Kim Kim]&lt;br /&gt;
&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&lt;/div&gt;</summary>
		<author><name>Jenny Kim Kim</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=User:Marvin_O%27Neal/OspA&amp;diff=1388064</id>
		<title>User:Marvin O&#039;Neal/OspA</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=User:Marvin_O%27Neal/OspA&amp;diff=1388064"/>
		<updated>2012-05-04T17:24:34Z</updated>

		<summary type="html">&lt;p&gt;Jenny Kim Kim: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;Structure load=&amp;quot;1fj1&amp;quot; size=&amp;quot;350&amp;quot; frame=&amp;quot;true&amp;quot; align=&amp;quot;right&amp;quot; name=&amp;quot;OspA-secondary&amp;quot; caption=&amp;quot;Outer surface protein A (OspA) ([[1fj1|1FJ1]], chain F) showing secondary structures.&amp;quot; scene=&amp;quot;Studio:G2SecL03/Ospa_default/5&amp;quot;/&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
&amp;lt;b&amp;gt;Outer Surface Protein A (OspA)&amp;lt;/b&amp;gt; is a major lipoprotein found on the surface of [http://en.wikipedia.org/wiki/Spirochaete spirochetes] from the genus [http://en.wikipedia.org/wiki/Borrelia &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt;] and is comprised of 21 anti-parallel β-sheets and a single α-helix. OspA&#039;s expression is regulated at different points in time, from being downregulated during the tick&#039;s feeding process on its host to being upregulated in the host&#039;s cerebrospinal fluid (CSF) to induce inflammatory response, resulting in acute Lyme [http://en.wikipedia.org/wiki/Neuroborreliosis neuroborreliosis]. OspA has also been used as a vector in working towards the development of a vaccine for [http://en.wikipedia.org/wiki/Lyme_disease Lyme disease].&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;Introduction&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Lyme disease is caused by the spirochete &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; and spread via hard-bodied ticks belonging to the family [http://en.wikipedia.org/wiki/Ixodidae &amp;lt;i&amp;gt;Ixodidae&amp;lt;/i&amp;gt;]. The &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; spirochetes are motile, helical organisms have several lipoproteins exposed on the surfaces of their membranes that invoke a response from host immune systems. The predominant group of these is classified as the outer surface proteins (Osps). Both the pathogenesis of Lyme disease as well as the host&#039;s immune response stem from the effects of the spirochete&#039;s presence and involvement in the system.&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
The major strain of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; in the United States is [http://en.wikipedia.org/wiki/Borrelia_burgdorferi &amp;lt;i&amp;gt;Borrelia burgdorferi&amp;lt;/i&amp;gt;] &amp;lt;i&amp;gt;sensu stricto (Bb.)&amp;lt;/i&amp;gt;, with 20-100 cases of Lyme disease being reported per 100,000 people. In Europe, Lyme disease cases are more prevalent, with 100-130 diagnoses per 100,000 people, but are caused by the spirochetes [http://en.wikipedia.org/wiki/Borrelia_afzelii &amp;lt;i&amp;gt;Borrelia afzelii (Ba.)&amp;lt;/i&amp;gt;] and [http://en.wikipedia.org/wiki/Borrelia_garinii &amp;lt;i&amp;gt;Borrelia garinii (Bg.)&amp;lt;/i&amp;gt;] in addition to &amp;lt;i&amp;gt;B. burgdorferi&amp;lt;/i&amp;gt;.&amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;ding&amp;quot;&amp;gt;PMID: 11183781&amp;lt;/ref&amp;gt; &lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Lyme disease is a debilitating condition that begins with a characteristic bullseye rash known as an [http://en.wikipedia.org/wiki/Erythema_chronicum_migrans erythema migrans (EM)] as well as the development of lesions on other parts of the body, not just at the site of the tick&#039;s attachment to its host. Secondary stage symptoms include affecting the heart, joints, and both the central and peripheral nervous systems. &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; has two major outer surface lipoproteins that are involved in Lyme disease: OspA and OspB. OspA is used in adhering to the tick&#039;s gut by binding with the tick receptor (TROSPA) &lt;br /&gt;
&lt;br /&gt;
During feeding, OspA is downregulated in order to evade an immune response from the incoming host blood into the gut, releasing the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; from the gut wall and migrating into the tick&#039;s salivary glands, thereby allowing it to enter the host through the bite. This is evidenced by the fact that patients with Lyme disease have been found to not possess OspA antibodies in the early stages of the disease.&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt; OspA is the protein most related to acute Lyme neuroborreliosis (LNB), the neurological manifestations of Lyme disease.  &lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Once inside the host, the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; has a great number of mechanisms available to actively suppress the host&#039;s immune system response and neutralize its effector mechanisms, such as the expression of another outer surface protein, OspC, which prevents susceptibility to the host&#039;s [http://en.wikipedia.org/wiki/Innate_immune_system innate immunity] and [http://en.wikipedia.org/wiki/Complement_system complement systems]. Additionally, &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; is capable of suppressing many of its surface proteins to reduce its detectability, but can also utilize protective means by temporarily expressing them when needed.&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;OspA &amp;amp; Lyme Disease&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Acute Lyme Neuroborreliosis (LNB) is part of the second stage of Lyme disease in which the spirochete invades the peripheral and central nervous systems (CNS). Symptoms of LNB include: Bannwarth’s Syndrome, Lymphocytic Meningitis, and [http://www.rightdiagnosis.com/sym/cranial_neuritis.htm Cranial] and [http://www.ncbi.nlm.nih.gov/pubmedhealth/PMH0001619/ Peripheral Neuritis]. The presence of OspA in the cerebrospinal fluid (CSF) is responsible for this complex inflammatory response in the brain that leads to the neuroborreliosis.&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
[[Image:G2L03-OspA-mechanism.jpg|thumb|300px|Mechanism of the host inflammatory response to OspA]]&lt;br /&gt;
&lt;br /&gt;
There are six steps involved in the host&#039;s inflammatory response to OspA: &amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt;&amp;lt;br&amp;gt;&lt;br /&gt;
&amp;lt;ol&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;When the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; enter the host’s CNS they encounter several different types of immune cells such as [http://en.wikipedia.org/wiki/Monocyte monocytes], [http://en.wikipedia.org/wiki/Macrophages macrophages], and [http://en.wikipedia.org/wiki/Dendritic_cells dendritic cells]. While in the CSF, outer surface protein A (OspA) is upregulated and it’s increased expression promotes recognition by a specific receptor on a monocyte.&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;The OspA-bound monocyte then releases proinflammatory [http://en.wikipedia.org/wiki/Cytokine cytokines] (i.e. [http://en.wikipedia.org/wiki/Interferon interferon]), as well as [http://en.wikipedia.org/wiki/Chemokine chemokines], such as [http://en.wikipedia.org/wiki/CXCL13 CXCL13]. In patients with LNB, there is an observed increase in the levels of these cytokines and chemokines in their CSF. The production of chemokines leads to the recruitment of other immune cells to the site of infection.&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://en.wikipedia.org/wiki/B_lymphocyte B-lymphocytes] respond to the new concentration gradient of CXCL13 between the blood and CSF and migrate into the CSF.&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;B-lymphocytes undergo [http://en.wikipedia.org/wiki/Receptor-mediated_endocytosis receptor-mediated endocytosis], consuming the OspA antigens present in the CSF, thereby triggering its activation. The B-lymphocytes then are able to differentiate and mature into  [http://en.wikipedia.org/wiki/Plasma_cells plasma cells].&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;The plasma cells create large quantities of anti-OspA antibodies specific to this strain of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; and release them into the CSF.&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;The anti-OspA antibodies will then bind to the OspA on the spirochete’s membrane, thus killing the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt;.&amp;lt;/li&amp;gt;&lt;br /&gt;
&amp;lt;/ol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
This process is two-sided in the sense that the OspA aids in the pathogenesis of new symptoms (neuroborreliosis) through the chemokine’s actions, as well as initiating the signaling cascade to destroy itself.&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;OspA Vaccination&amp;lt;/h2&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;Structure load=&amp;quot;1fj1&amp;quot; size=&amp;quot;350&amp;quot; frame=&amp;quot;true&amp;quot; align=&amp;quot;right&amp;quot; name=&amp;quot;complex&amp;quot; caption=&amp;quot;Outer surface protein A (OspA) in complex with the LA-2 Fab antibody ([[1fj1|1FJ1]]).&amp;quot; scene=&amp;quot;Studio:G2SecL03/Ospafab-orig/3&amp;quot;/&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Risk of developing Lyme disease can be mitigated by staying clear of areas with populations of ticks, wearing proper attire to minimize easily bitten areas of the body, and using insect repellents containing [http://en.wikipedia.org/wiki/DEET DEET] (N,N-diethy-m-toluamide). However, another effective means for prevention could be possible by using an outer surface protein from &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; in the creation of a vaccine.&amp;lt;ref name=&amp;quot;nigrovic&amp;quot;&amp;gt;PMID: 16893489&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
The membrane composition of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; is abundant in both OspA and OspB, and the two proteins share a 53% similarity in their primary sequences. Both OspA and OspB are expressed in the tick&#039;s gut and downregulated during feeding and aid in its survivability; however, OspA is overall less varied and reactive than OspB, which has greater variability.&amp;lt;ref name=&amp;quot;becker&amp;quot;&amp;gt;PMID: 15713683&amp;lt;/ref&amp;gt; The relatively conserved sequence of OspA thus lends itself better to study and application toward the development of a vaccine for a broader range of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; strains in the treatment of Lyme disease than that of OspB. The first vaccine used a purified recombinant form of OspA and functioned in blocking transmission of the spirochetes expressing OspA from tick to host during feeding, killing them while still attached to the tick&#039;s gut.&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;battisti&amp;quot;&amp;gt;PMID: 18779341&amp;lt;/ref&amp;gt; The vaccine, Lymerix, had shown 76% and 92% effectiveness in separate clinical trials in which patients were treated for two years following a three-dose schedule. However, the vaccination was suspended from use in 2002 when opponents claimed the [http://en.wikipedia.org/wiki/Immunoglobulin_G IgG antibodies] for OspA were associated with the onset of severe chronic arthritis, as well as other side effects affecting immunity.&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;plotkin&amp;quot;&amp;gt;PMID: 21217175&amp;lt;/ref&amp;gt;  This fact, in conjunction with the desire for a more widespread vaccine treating multiple strains of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt;, has spurred research towards a new vaccine.&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
To address this problem of international protection it would be helpful to create a chimera, mixing the OspA of different species. In order to do this the epitope of OspA should be studied. &amp;lt;scene name=&#039;Studio:G2SecL03/Ospafab-fab/3&#039; target=&amp;quot;complex&amp;quot;&amp;gt;LA-2&amp;lt;/scene&amp;gt; is a murine monoclonal antibody that &amp;lt;scene name=&#039;Studio:G2SecL03/Ospafab-interaction/3&#039; target=&amp;quot;complex&amp;quot;&amp;gt;binds strongly&amp;lt;/scene&amp;gt; to &amp;lt;scene name=&#039;Studio:G2SecL03/Ospafab-ospa/3&#039; target=&amp;quot;complex&amp;quot;&amp;gt;OspA&amp;lt;/scene&amp;gt;, and how effective a vaccine is correlated with LA-2 binding. 5&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;scene name=&#039;Studio:G2SecL03/Ospafab-orig/3&#039; target=&amp;quot;complex&amp;quot;&amp;gt;Reset model&amp;lt;/scene&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;Structure of OspA&amp;lt;/h2&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;Structure load=&amp;quot;1fj1&amp;quot; size=&amp;quot;350&amp;quot; frame=&amp;quot;true&amp;quot; align=&amp;quot;right&amp;quot; name=&amp;quot;OspA-manip&amp;quot; caption=&amp;quot;Outer surface protein A (OspA) ([[1fj1|1FJ1]], chain F)&amp;quot; scene=&amp;quot;Studio:G2SecL03/Ospa_3loopscartoon/3&amp;quot;/&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
OspA is made up of 273 residues over 21 anti-parallel β-sheets and a single α-helix. It&#039;s folded conformation is divided into three main sections: a N-terminus &amp;quot;sandwich,&amp;quot; a central region comprising of several β-sheets and a C-terminus &amp;quot;barrel&amp;quot; domain.&amp;lt;ref name=&amp;quot;ding&amp;quot;&amp;gt;PMID: 11183781&amp;lt;/ref&amp;gt; The folded regions at its ends are connected by a single β-sheet layer in the middle, giving the protein the unique shape of a dumbell.&amp;lt;ref name=&amp;quot;makabe&amp;quot;&amp;gt;PMID: 16823038&amp;lt;/ref&amp;gt; &lt;br /&gt;
&lt;br /&gt;
There are &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops/4&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;three loops&amp;lt;/scene&amp;gt; at the C-terminus of OspA that are important in binding with the LA-2 Fab antibody, whose interactions provide great insight into vaccine research and effectiveness. Within these loops, there are &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-nor/3&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;three residues&amp;lt;/scene&amp;gt; &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-r/2&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;(show residue R-groups)&amp;lt;/scene&amp;gt; where there are distinct variations between the different strains of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; and serve as potential targets for the creation of a broader vaccine.&amp;lt;ref name=&amp;quot;ding&amp;quot;&amp;gt;PMID: 11183781&amp;lt;/ref&amp;gt; &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops3res/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;(display both the three loops and three residues together)&amp;lt;/scene&amp;gt; &lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-loop1/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Loop 1&amp;lt;/scene&amp;gt;, (residues 203-220), is important in showing variation amongst the different strains of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; as well as being optimally conformed for binding without steric hindrance. &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-loop2/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Loop 2&amp;lt;/scene&amp;gt; (residues 224-233) and &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-loop3/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Loop 3&amp;lt;/scene&amp;gt; (residues 246-257) are more strongly conserved than Loop 1 but also help to show some variation amongst strains. The LA-2 Fab antibody readily recognizes OspA from &amp;lt;i&amp;gt;B. burgdorferi&amp;lt;/i&amp;gt;, but does not recognize that from &amp;lt;i&amp;gt;B. afzelii&amp;lt;/i&amp;gt; or &amp;lt;i&amp;gt;B. garinii&amp;lt;/i&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
Between Bb. and Ba. genetic sequences are generally invariant, but two residues change between the species, ALA 208 &amp;lt;&amp;lt;ALA 208&amp;gt;&amp;gt; in Bb. is GLN in Ba., and ASN 251 &amp;lt;&amp;lt;ASN 251&amp;gt;&amp;gt; in Bb. is ALA in Ba.. Bg. has more variation and in addition to the previous two differences, has at least one more difference, where ALA 215 &amp;lt;&amp;lt;ALA 215&amp;gt;&amp;gt; in Bb. is LYS, Bg. sometimes also has a deletion at Bb.’s ALA 208. LA-2 and OspA of Bb. form a tight interface when binding, and the longer GLN sidechain found in Ba. and Bg. is more difficult to accommodate, causing less binding. A chimera that was weakly recognized by LA-2 was made with parts of loop 1 from Bb., and loops 2 and 3 from Bg. 5 Recently, a different kind of chimera has been made which combined the proximal region of Bb. and distal region of Ba., and was able to successfully protect mice from both species. 8&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h3&amp;gt;List of Available Scenes for OspA&amp;lt;/h3&amp;gt;&lt;br /&gt;
&amp;lt;ul&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa_3loopscartoon/3&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Reset model&amp;lt;/scene&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops/4&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Three loops&amp;lt;/scene&amp;gt; in C-terminus (close up)&lt;br /&gt;
         &amp;lt;ul&amp;gt;&lt;br /&gt;
           &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-loop1/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Loop 1&amp;lt;/scene&amp;gt; (residues 203-220)&amp;lt;/li&amp;gt;&lt;br /&gt;
           &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-loop2/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Loop 2&amp;lt;/scene&amp;gt; (residues 224-233)&amp;lt;/li&amp;gt;&lt;br /&gt;
           &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-loop3/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Loop 3&amp;lt;/scene&amp;gt; (residues 246-257)&amp;lt;/li&amp;gt;&lt;br /&gt;
         &amp;lt;/ul&amp;gt;&lt;br /&gt;
     &amp;lt;/li&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-nor/3&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Three residues&amp;lt;/scene&amp;gt; in C-terminus (Ala208, Ala215 and Asn251 in &amp;lt;i&amp;gt;B. burgdorferi&amp;lt;/i&amp;gt;; also hides R-groups)&lt;br /&gt;
         &amp;lt;ul&amp;gt;&lt;br /&gt;
           &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-r/2&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Display R-groups&amp;lt;/scene&amp;gt; of Ala208, Ala215 and Asn251&amp;lt;/li&amp;gt;&lt;br /&gt;
         &amp;lt;/ul&amp;gt;&lt;br /&gt;
     &amp;lt;/li&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops3res/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Three loops and all three residues (with R-groups included)&amp;lt;/scene&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
&amp;lt;/ul&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;References&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;references /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;External Links&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;ul&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://www.who.int/ith/diseases/lyme/en/index.html World Health Organization: Lyme Disease]&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://www.ncbi.nlm.nih.gov/pubmedhealth/PMH0002296/ PubMed Health: Lyme Disease]&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://www.aldf.com/ American Lyme Disease Foundation]&lt;br /&gt;
&amp;lt;/ul&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;Proteopedia Page Contributors and Editors&amp;lt;/h2&amp;gt;&lt;br /&gt;
[http://proteopedia.org/wiki/index.php/User:Kimberly_Slade Kimberly Slade], [http://proteopedia.org/wiki/index.php/User:Cara_Lin Cara Lin], [http://proteopedia.org/wiki/index.php/User:Andrea_Mullen Andrea Mullen], [http://proteopedia.org/wiki/index.php/User:Jenny_Kim_Kim Jenny Kim Kim]&lt;br /&gt;
&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&lt;/div&gt;</summary>
		<author><name>Jenny Kim Kim</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=User:Marvin_O%27Neal/OspA&amp;diff=1388063</id>
		<title>User:Marvin O&#039;Neal/OspA</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=User:Marvin_O%27Neal/OspA&amp;diff=1388063"/>
		<updated>2012-05-04T17:18:53Z</updated>

		<summary type="html">&lt;p&gt;Jenny Kim Kim: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;Structure load=&amp;quot;1fj1&amp;quot; size=&amp;quot;350&amp;quot; frame=&amp;quot;true&amp;quot; align=&amp;quot;right&amp;quot; name=&amp;quot;OspA-secondary&amp;quot; caption=&amp;quot;Outer surface protein A (OspA) ([[1fj1|1FJ1]], chain F) showing secondary structures.&amp;quot; scene=&amp;quot;Studio:G2SecL03/Ospa_default/5&amp;quot;/&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
&amp;lt;b&amp;gt;Outer Surface Protein A (OspA)&amp;lt;/b&amp;gt; is a major lipoprotein found on the surface of [http://en.wikipedia.org/wiki/Spirochaete spirochetes] from the genus [http://en.wikipedia.org/wiki/Borrelia &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt;] and is comprised of 21 anti-parallel β-sheets and a single α-helix. OspA&#039;s expression is regulated at different points in time, from being downregulated during the tick&#039;s feeding process on its host to being upregulated in the host&#039;s cerebrospinal fluid (CSF) to induce inflammatory response, resulting in acute Lyme [http://en.wikipedia.org/wiki/Neuroborreliosis neuroborreliosis]. OspA has also been used as a vector in working towards the development of a vaccine for [http://en.wikipedia.org/wiki/Lyme_disease Lyme disease].&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;Introduction&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Lyme disease is caused by the spirochete &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; and spread via hard-bodied ticks belonging to the family [http://en.wikipedia.org/wiki/Ixodidae &amp;lt;i&amp;gt;Ixodidae&amp;lt;/i&amp;gt;]. The &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; spirochetes are motile, helical organisms have several lipoproteins exposed on the surfaces of their membranes that invoke a response from host immune systems. The predominant group of these is classified as the outer surface proteins (Osps). Both the pathogenesis of Lyme disease as well as the host&#039;s immune response stem from the effects of the spirochete&#039;s presence and involvement in the system.&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
The major strain of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; in the United States is [http://en.wikipedia.org/wiki/Borrelia_burgdorferi &amp;lt;i&amp;gt;Borrelia burgdorferi&amp;lt;/i&amp;gt;] &amp;lt;i&amp;gt;sensu stricto (Bb.)&amp;lt;/i&amp;gt;, with 20-100 cases of Lyme disease being reported per 100,000 people. In Europe, Lyme disease cases are more prevalent, with 100-130 diagnoses per 100,000 people, but are caused by the spirochetes [http://en.wikipedia.org/wiki/Borrelia_afzelii &amp;lt;i&amp;gt;Borrelia afzelii (Ba.)&amp;lt;/i&amp;gt;] and [http://en.wikipedia.org/wiki/Borrelia_garinii &amp;lt;i&amp;gt;Borrelia garinii (Bg.)&amp;lt;/i&amp;gt;] in addition to &amp;lt;i&amp;gt;B. burgdorferi&amp;lt;/i&amp;gt;.&amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;ding&amp;quot;&amp;gt;PMID: 11183781&amp;lt;/ref&amp;gt; &lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Lyme disease is a debilitating condition that begins with a characteristic bullseye rash known as an [http://en.wikipedia.org/wiki/Erythema_chronicum_migrans erythema migrans (EM)] as well as the development of lesions on other parts of the body, not just at the site of the tick&#039;s attachment to its host. Secondary stage symptoms include affecting the heart, joints, and both the central and peripheral nervous systems. &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; has two major outer surface lipoproteins that are involved in Lyme disease: OspA and OspB. OspA is used in adhering to the tick&#039;s gut by binding with the tick receptor (TROSPA) &lt;br /&gt;
&lt;br /&gt;
During feeding, OspA is downregulated in order to evade an immune response from the incoming host blood into the gut, releasing the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; from the gut wall and migrating into the tick&#039;s salivary glands, thereby allowing it to enter the host through the bite. This is evidenced by the fact that patients with Lyme disease have been found to not possess OspA antibodies in the early stages of the disease.&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt; OspA is the protein most related to acute Lyme neuroborreliosis (LNB), the neurological manifestations of Lyme disease.  &lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Once inside the host, the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; has a great number of mechanisms available to actively suppress the host&#039;s immune system response and neutralize its effector mechanisms, such as the expression of another outer surface protein, OspC, which prevents susceptibility to the host&#039;s [http://en.wikipedia.org/wiki/Innate_immune_system innate immunity] and [http://en.wikipedia.org/wiki/Complement_system complement systems]. Additionally, &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; is capable of suppressing many of its surface proteins to reduce its detectability, but can also utilize protective means by temporarily expressing them when needed.&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;OspA &amp;amp; Lyme Disease&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Acute Lyme Neuroborreliosis (LNB) is part of the second stage of Lyme disease in which the spirochete invades the peripheral and central nervous systems (CNS). Symptoms of LNB include: Bannwarth’s Syndrome, Lymphocytic Meningitis, and [http://www.rightdiagnosis.com/sym/cranial_neuritis.htm Cranial] and [http://www.ncbi.nlm.nih.gov/pubmedhealth/PMH0001619/ Peripheral Neuritis]. The presence of OspA in the cerebrospinal fluid (CSF) is responsible for this complex inflammatory response in the brain that leads to the neuroborreliosis.&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
[[Image:G2L03-OspA-mechanism.jpg|thumb|300px|Mechanism of the host inflammatory response to OspA]]&lt;br /&gt;
&lt;br /&gt;
There are six steps involved in the host&#039;s inflammatory response to OspA: &amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt;&amp;lt;br&amp;gt;&lt;br /&gt;
&amp;lt;ol&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;When the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; enter the host’s CNS they encounter several different types of immune cells such as [http://en.wikipedia.org/wiki/Monocyte monocytes], [http://en.wikipedia.org/wiki/Macrophages macrophages], and [http://en.wikipedia.org/wiki/Dendritic_cells dendritic cells]. While in the CSF, outer surface protein A (OspA) is upregulated and it’s increased expression promotes recognition by a specific receptor on a monocyte.&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;The OspA-bound monocyte then releases proinflammatory [http://en.wikipedia.org/wiki/Cytokine cytokines] (i.e. [http://en.wikipedia.org/wiki/Interferon interferon]), as well as [http://en.wikipedia.org/wiki/Chemokine chemokines], such as [http://en.wikipedia.org/wiki/CXCL13 CXCL13]. In patients with LNB, there is an observed increase in the levels of these cytokines and chemokines in their CSF. The production of chemokines leads to the recruitment of other immune cells to the site of infection.&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://en.wikipedia.org/wiki/B_lymphocyte B-lymphocytes] respond to the new concentration gradient of CXCL13 between the blood and CSF and migrate into the CSF.&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;B-lymphocytes undergo [http://en.wikipedia.org/wiki/Receptor-mediated_endocytosis receptor-mediated endocytosis], consuming the OspA antigens present in the CSF, thereby triggering its activation. The B-lymphocytes then are able to differentiate and mature into  [http://en.wikipedia.org/wiki/Plasma_cells plasma cells].&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;The plasma cells create large quantities of anti-OspA antibodies specific to this strain of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; and release them into the CSF.&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;The anti-OspA antibodies will then bind to the OspA on the spirochete’s membrane, thus killing the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt;.&amp;lt;/li&amp;gt;&lt;br /&gt;
&amp;lt;/ol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
This process is two-sided in the sense that the OspA aids in the pathogenesis of new symptoms (neuroborreliosis) through the chemokine’s actions, as well as initiating the signaling cascade to destroy itself.&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;OspA Vaccination&amp;lt;/h2&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;Structure load=&amp;quot;1fj1&amp;quot; size=&amp;quot;350&amp;quot; frame=&amp;quot;true&amp;quot; align=&amp;quot;right&amp;quot; name=&amp;quot;complex&amp;quot; caption=&amp;quot;Outer surface protein A (OspA) in complex with the LA-2 Fab antibody ([[1fj1|1FJ1]]).&amp;quot; scene=&amp;quot;Studio:G2SecL03/Ospafab-orig/2&amp;quot;/&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Risk of developing Lyme disease can be mitigated by staying clear of areas with populations of ticks, wearing proper attire to minimize easily bitten areas of the body, and using insect repellents containing [http://en.wikipedia.org/wiki/DEET DEET] (N,N-diethy-m-toluamide). However, another effective means for prevention could be possible by using an outer surface protein from &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; in the creation of a vaccine.&amp;lt;ref name=&amp;quot;nigrovic&amp;quot;&amp;gt;PMID: 16893489&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
The membrane composition of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; is abundant in both OspA and OspB, and the two proteins share a 53% similarity in their primary sequences. Both OspA and OspB are expressed in the tick&#039;s gut and downregulated during feeding and aid in its survivability; however, OspA is overall less varied and reactive than OspB, which has greater variability.&amp;lt;ref name=&amp;quot;becker&amp;quot;&amp;gt;PMID: 15713683&amp;lt;/ref&amp;gt; The relatively conserved sequence of OspA thus lends itself better to study and application toward the development of a vaccine for a broader range of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; strains in the treatment of Lyme disease than that of OspB. The first vaccine used a purified recombinant form of OspA and functioned in blocking transmission of the spirochetes expressing OspA from tick to host during feeding, killing them while still attached to the tick&#039;s gut.&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;battisti&amp;quot;&amp;gt;PMID: 18779341&amp;lt;/ref&amp;gt; The vaccine, Lymerix, had shown 76% and 92% effectiveness in separate clinical trials in which patients were treated for two years following a three-dose schedule. However, the vaccination was suspended from use in 2002 when opponents claimed the [http://en.wikipedia.org/wiki/Immunoglobulin_G IgG antibodies] for OspA were associated with the onset of severe chronic arthritis, as well as other side effects affecting immunity.&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;plotkin&amp;quot;&amp;gt;PMID: 21217175&amp;lt;/ref&amp;gt;  This fact, in conjunction with the desire for a more widespread vaccine treating multiple strains of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt;, has spurred research towards a new vaccine.&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
To address this problem of international protection it would be helpful to create a chimera, mixing the OspA of different species. In order to do this the epitope of OspA should be studied. &amp;lt;scene name=&#039;Studio:G2SecL03/Ospafab-fab/2&#039; target=&amp;quot;complex&amp;quot;&amp;gt;LA-2&amp;lt;/scene&amp;gt; is a murine monoclonal antibody that &amp;lt;scene name=&#039;Studio:G2SecL03/Ospafab-interaction/2&#039; target=&amp;quot;complex&amp;quot;&amp;gt;binds strongly&amp;lt;/scene&amp;gt; to &amp;lt;scene name=&#039;Studio:G2SecL03/Ospafab-ospa/2&#039; target=&amp;quot;complex&amp;quot;&amp;gt;OspA&amp;lt;/scene&amp;gt;, and how effective a vaccine is correlated with LA-2 binding. 5&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;scene name=&#039;Studio:G2SecL03/Ospafab-orig/2&#039; target=&amp;quot;complex&amp;quot;&amp;gt;Reset model&amp;lt;/scene&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;Structure of OspA&amp;lt;/h2&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;Structure load=&amp;quot;1fj1&amp;quot; size=&amp;quot;350&amp;quot; frame=&amp;quot;true&amp;quot; align=&amp;quot;right&amp;quot; name=&amp;quot;OspA-manip&amp;quot; caption=&amp;quot;Outer surface protein A (OspA) ([[1fj1|1FJ1]], chain F)&amp;quot; scene=&amp;quot;Studio:G2SecL03/Ospa_3loopscartoon/3&amp;quot;/&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
OspA is made up of 273 residues over 21 anti-parallel β-sheets and a single α-helix. It&#039;s folded conformation is divided into three main sections: a N-terminus &amp;quot;sandwich,&amp;quot; a central region comprising of several β-sheets and a C-terminus &amp;quot;barrel&amp;quot; domain.&amp;lt;ref name=&amp;quot;ding&amp;quot;&amp;gt;PMID: 11183781&amp;lt;/ref&amp;gt; The folded regions at its ends are connected by a single β-sheet layer in the middle, giving the protein the unique shape of a dumbell.&amp;lt;ref name=&amp;quot;makabe&amp;quot;&amp;gt;PMID: 16823038&amp;lt;/ref&amp;gt; &lt;br /&gt;
&lt;br /&gt;
There are &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops/4&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;three loops&amp;lt;/scene&amp;gt; at the C-terminus of OspA that are important in binding with the LA-2 Fab antibody, whose interactions provide great insight into vaccine research and effectiveness. Within these loops, there are &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-nor/3&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;three residues&amp;lt;/scene&amp;gt; &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-r/2&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;(show residue R-groups)&amp;lt;/scene&amp;gt; where there are distinct variations between the different strains of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; and serve as potential targets for the creation of a broader vaccine.&amp;lt;ref name=&amp;quot;ding&amp;quot;&amp;gt;PMID: 11183781&amp;lt;/ref&amp;gt; &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops3res/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;(display both the three loops and three residues together)&amp;lt;/scene&amp;gt; &lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-loop1/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Loop 1&amp;lt;/scene&amp;gt;, (residues 203-220), is important in showing variation amongst the different strains of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; as well as being optimally conformed for binding without steric hindrance. &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-loop2/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Loop 2&amp;lt;/scene&amp;gt; (residues 224-233) and &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-loop3/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Loop 3&amp;lt;/scene&amp;gt; (residues 246-257) are more strongly conserved than Loop 1 but also help to show some variation amongst strains. The LA-2 Fab antibody readily recognizes OspA from &amp;lt;i&amp;gt;B. burgdorferi&amp;lt;/i&amp;gt;, but does not recognize that from &amp;lt;i&amp;gt;B. afzelii&amp;lt;/i&amp;gt; or &amp;lt;i&amp;gt;B. garinii&amp;lt;/i&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
Between Bb. and Ba. genetic sequences are generally invariant, but two residues change between the species, ALA 208 &amp;lt;&amp;lt;ALA 208&amp;gt;&amp;gt; in Bb. is GLN in Ba., and ASN 251 &amp;lt;&amp;lt;ASN 251&amp;gt;&amp;gt; in Bb. is ALA in Ba.. Bg. has more variation and in addition to the previous two differences, has at least one more difference, where ALA 215 &amp;lt;&amp;lt;ALA 215&amp;gt;&amp;gt; in Bb. is LYS, Bg. sometimes also has a deletion at Bb.’s ALA 208. LA-2 and OspA of Bb. form a tight interface when binding, and the longer GLN sidechain found in Ba. and Bg. is more difficult to accommodate, causing less binding. A chimera that was weakly recognized by LA-2 was made with parts of loop 1 from Bb., and loops 2 and 3 from Bg. 5 Recently, a different kind of chimera has been made which combined the proximal region of Bb. and distal region of Ba., and was able to successfully protect mice from both species. 8&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h3&amp;gt;List of Available Scenes for OspA&amp;lt;/h3&amp;gt;&lt;br /&gt;
&amp;lt;ul&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa_3loopscartoon/3&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Reset model&amp;lt;/scene&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops/4&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Three loops&amp;lt;/scene&amp;gt; in C-terminus (close up)&lt;br /&gt;
         &amp;lt;ul&amp;gt;&lt;br /&gt;
           &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-loop1/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Loop 1&amp;lt;/scene&amp;gt; (residues 203-220)&amp;lt;/li&amp;gt;&lt;br /&gt;
           &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-loop2/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Loop 2&amp;lt;/scene&amp;gt; (residues 224-233)&amp;lt;/li&amp;gt;&lt;br /&gt;
           &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-loop3/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Loop 3&amp;lt;/scene&amp;gt; (residues 246-257)&amp;lt;/li&amp;gt;&lt;br /&gt;
         &amp;lt;/ul&amp;gt;&lt;br /&gt;
     &amp;lt;/li&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-nor/3&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Three residues&amp;lt;/scene&amp;gt; in C-terminus (Ala208, Ala215 and Asn251 in &amp;lt;i&amp;gt;B. burgdorferi&amp;lt;/i&amp;gt;; also hides R-groups)&lt;br /&gt;
         &amp;lt;ul&amp;gt;&lt;br /&gt;
           &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-r/2&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Display R-groups&amp;lt;/scene&amp;gt; of Ala208, Ala215 and Asn251&amp;lt;/li&amp;gt;&lt;br /&gt;
         &amp;lt;/ul&amp;gt;&lt;br /&gt;
     &amp;lt;/li&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops3res/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Three loops and all three residues (with R-groups included)&amp;lt;/scene&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
&amp;lt;/ul&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;References&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;references /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;External Links&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;ul&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://www.who.int/ith/diseases/lyme/en/index.html World Health Organization: Lyme Disease]&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://www.ncbi.nlm.nih.gov/pubmedhealth/PMH0002296/ PubMed Health: Lyme Disease]&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://www.aldf.com/ American Lyme Disease Foundation]&lt;br /&gt;
&amp;lt;/ul&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;Proteopedia Page Contributors and Editors&amp;lt;/h2&amp;gt;&lt;br /&gt;
[http://proteopedia.org/wiki/index.php/User:Kimberly_Slade Kimberly Slade], [http://proteopedia.org/wiki/index.php/User:Cara_Lin Cara Lin], [http://proteopedia.org/wiki/index.php/User:Andrea_Mullen Andrea Mullen], [http://proteopedia.org/wiki/index.php/User:Jenny_Kim_Kim Jenny Kim Kim]&lt;br /&gt;
&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&lt;/div&gt;</summary>
		<author><name>Jenny Kim Kim</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=User:Marvin_O%27Neal/OspA&amp;diff=1384561</id>
		<title>User:Marvin O&#039;Neal/OspA</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=User:Marvin_O%27Neal/OspA&amp;diff=1384561"/>
		<updated>2012-05-02T17:22:15Z</updated>

		<summary type="html">&lt;p&gt;Jenny Kim Kim: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;Structure load=&amp;quot;1fj1&amp;quot; size=&amp;quot;350&amp;quot; frame=&amp;quot;true&amp;quot; align=&amp;quot;right&amp;quot; name=&amp;quot;OspA-secondary&amp;quot; caption=&amp;quot;Outer surface protein A (OspA) ([[1fj1|1FJ1]], chain F) showing secondary structures.&amp;quot; scene=&amp;quot;Studio:G2SecL03/Ospa_default/5&amp;quot;/&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
&amp;lt;b&amp;gt;Outer Surface Protein A (OspA)&amp;lt;/b&amp;gt; is a major lipoprotein found on the surface of [http://en.wikipedia.org/wiki/Spirochaete spirochetes] from the genus [http://en.wikipedia.org/wiki/Borrelia &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt;] and is comprised of 21 anti-parallel β-sheets and a single α-helix. OspA&#039;s expression is regulated at different points in time, from being downregulated during the tick&#039;s feeding process on its host to being upregulated in the host&#039;s cerebrospinal fluid (CSF) to induce inflammatory response, resulting in acute Lyme [http://en.wikipedia.org/wiki/Neuroborreliosis neuroborreliosis]. OspA has also been used as a vector in working towards the development of a vaccine for [http://en.wikipedia.org/wiki/Lyme_disease Lyme disease].&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;Introduction&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Lyme disease is caused by the spirochete &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; and spread via hard-bodied ticks belonging to the family [http://en.wikipedia.org/wiki/Ixodidae &amp;lt;i&amp;gt;Ixodidae&amp;lt;/i&amp;gt;]. The &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; spirochetes are motile, helical organisms have several lipoproteins exposed on the surfaces of their membranes that invoke a response from host immune systems. The predominant group of these is classified as the outer surface proteins (Osps). Both the pathogenesis of Lyme disease as well as the host&#039;s immune response stem from the effects of the spirochete&#039;s presence and involvement in the system.&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
The major strain of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; in the United States is [http://en.wikipedia.org/wiki/Borrelia_burgdorferi &amp;lt;i&amp;gt;Borrelia burgdorferi&amp;lt;/i&amp;gt;] &amp;lt;i&amp;gt;sensu stricto (Bb.)&amp;lt;/i&amp;gt;, with 20-100 cases of Lyme disease being reported per 100,000 people. In Europe, Lyme disease cases are more prevalent, with 100-130 diagnoses per 100,000 people, but are caused by the spirochetes [http://en.wikipedia.org/wiki/Borrelia_afzelii &amp;lt;i&amp;gt;Borrelia afzelii (Ba.)&amp;lt;/i&amp;gt;] and [http://en.wikipedia.org/wiki/Borrelia_garinii &amp;lt;i&amp;gt;Borrelia garinii (Bg.)&amp;lt;/i&amp;gt;] in addition to &amp;lt;i&amp;gt;B. burgdorferi&amp;lt;/i&amp;gt;.&amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;ding&amp;quot;&amp;gt;PMID: 11183781&amp;lt;/ref&amp;gt; &lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Lyme disease is a debilitating condition that begins with a characteristic bullseye rash known as an [http://en.wikipedia.org/wiki/Erythema_chronicum_migrans erythema migrans (EM)] as well as the development of lesions on other parts of the body, not just at the site of the tick&#039;s attachment to its host. Secondary stage symptoms include affecting the heart, joints, and both the central and peripheral nervous systems. &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; has two major outer surface lipoproteins that are involved in Lyme disease: OspA and OspB. OspA is used in adhering to the tick&#039;s gut by binding with the tick receptor (TROSPA) &lt;br /&gt;
&lt;br /&gt;
During feeding, OspA is downregulated in order to evade an immune response from the incoming host blood into the gut, releasing the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; from the gut wall and migrating into the tick&#039;s salivary glands, thereby allowing it to enter the host through the bite. This is evidenced by the fact that patients with Lyme disease have been found to not possess OspA antibodies in the early stages of the disease.&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt; OspA is the protein most related to acute Lyme neuroborreliosis (LNB), the neurological manifestations of Lyme disease.  &lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Once inside the host, the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; has a great number of mechanisms available to actively suppress the host&#039;s immune system response and neutralize its effector mechanisms, such as the expression of another outer surface protein, OspC, which prevents susceptibility to the host&#039;s [http://en.wikipedia.org/wiki/Innate_immune_system innate immunity] and [http://en.wikipedia.org/wiki/Complement_system complement systems]. Additionally, &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; is capable of suppressing many of its surface proteins to reduce its detectability, but can also utilize protective means by temporarily expressing them when needed.&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;OspA &amp;amp; Lyme Disease&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Acute Lyme Neuroborreliosis (LNB) is part of the second stage of Lyme disease in which the spirochete invades the peripheral and central nervous systems (CNS). Symptoms of LNB include: Bannwarth’s Syndrome, Lymphocytic Meningitis, and [http://www.rightdiagnosis.com/sym/cranial_neuritis.htm Cranial] and [http://www.ncbi.nlm.nih.gov/pubmedhealth/PMH0001619/ Peripheral Neuritis]. The presence of OspA in the cerebrospinal fluid (CSF) is responsible for this complex inflammatory response in the brain that leads to the neuroborreliosis.&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
[[Image:G2L03-OspA-mechanism.jpg|thumb|300px|Mechanism of the host inflammatory response to OspA]]&lt;br /&gt;
&lt;br /&gt;
There are six steps involved in the host&#039;s inflammatory response to OspA: &amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt;&amp;lt;br&amp;gt;&lt;br /&gt;
&amp;lt;ol&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;When the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; enter the host’s CNS they encounter several different types of immune cells such as [http://en.wikipedia.org/wiki/Monocyte monocytes], [http://en.wikipedia.org/wiki/Macrophages macrophages], and [http://en.wikipedia.org/wiki/Dendritic_cells dendritic cells]. While in the CSF, outer surface protein A (OspA) is upregulated and it’s increased expression promotes recognition by a specific receptor on a monocyte.&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;The OspA-bound monocyte then releases proinflammatory [http://en.wikipedia.org/wiki/Cytokine cytokines] (i.e. [http://en.wikipedia.org/wiki/Interferon interferon]), as well as [http://en.wikipedia.org/wiki/Chemokine chemokines], such as [http://en.wikipedia.org/wiki/CXCL13 CXCL13]. In patients with LNB, there is an observed increase in the levels of these cytokines and chemokines in their CSF. The production of chemokines leads to the recruitment of other immune cells to the site of infection.&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://en.wikipedia.org/wiki/B_lymphocyte B-lymphocytes] respond to the new concentration gradient of CXCL13 between the blood and CSF and migrate into the CSF.&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;B-lymphocytes undergo [http://en.wikipedia.org/wiki/Receptor-mediated_endocytosis receptor-mediated endocytosis], consuming the OspA antigens present in the CSF, thereby triggering its activation. The B-lymphocytes then are able to differentiate and mature into  [http://en.wikipedia.org/wiki/Plasma_cells plasma cells].&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;The plasma cells create large quantities of anti-OspA antibodies specific to this strain of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; and release them into the CSF.&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;The anti-OspA antibodies will then bind to the OspA on the spirochete’s membrane, thus killing the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt;.&amp;lt;/li&amp;gt;&lt;br /&gt;
&amp;lt;/ol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
This process is two-sided in the sense that the OspA aids in the pathogenesis of new symptoms (neuroborreliosis) through the chemokine’s actions, as well as initiating the signaling cascade to destroy itself.&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;OspA Vaccination&amp;lt;/h2&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;Structure load=&amp;quot;1fj1&amp;quot; size=&amp;quot;350&amp;quot; frame=&amp;quot;true&amp;quot; align=&amp;quot;right&amp;quot; name=&amp;quot;complex&amp;quot; caption=&amp;quot;Outer surface protein A (OspA) in complex with the LA-2 Fab antibody ([[1fj1|1FJ1]]).&amp;quot; scene=&amp;quot;Studio:G2SecL03/Ospafab-orig/1&amp;quot;/&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Risk of developing Lyme disease can be mitigated by staying clear of areas with populations of ticks, wearing proper attire to minimize easily bitten areas of the body, and using insect repellents containing [http://en.wikipedia.org/wiki/DEET DEET] (N,N-diethy-m-toluamide). However, another effective means for prevention could be possible by using an outer surface protein from &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; in the creation of a vaccine.&amp;lt;ref name=&amp;quot;nigrovic&amp;quot;&amp;gt;PMID: 16893489&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
The membrane composition of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; is abundant in both OspA and OspB, and the two proteins share a 53% similarity in their primary sequences. Both OspA and OspB are expressed in the tick&#039;s gut and downregulated during feeding and aid in its survivability; however, OspA is overall less varied and reactive than OspB, which has greater variability.&amp;lt;ref name=&amp;quot;becker&amp;quot;&amp;gt;PMID: 15713683&amp;lt;/ref&amp;gt; The relatively conserved sequence of OspA thus lends itself better to study and application toward the development of a vaccine for a broader range of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; strains in the treatment of Lyme disease than that of OspB. The first vaccine used a purified recombinant form of OspA and functioned in blocking transmission of the spirochetes expressing OspA from tick to host during feeding, killing them while still attached to the tick&#039;s gut.&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;battisti&amp;quot;&amp;gt;PMID: 18779341&amp;lt;/ref&amp;gt; The vaccine, Lymerix, had shown 76% and 92% effectiveness in separate clinical trials in which patients were treated for two years following a three-dose schedule. However, the vaccination was suspended from use in 2002 when opponents claimed the [http://en.wikipedia.org/wiki/Immunoglobulin_G IgG antibodies] for OspA were associated with the onset of severe chronic arthritis, as well as other side effects affecting immunity.&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;plotkin&amp;quot;&amp;gt;PMID: 21217175&amp;lt;/ref&amp;gt;  This fact, in conjunction with the desire for a more widespread vaccine treating multiple strains of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt;, has spurred research towards a new vaccine.&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
To address this problem of international protection it would be helpful to create a chimera, mixing the OspA of different species. In order to do this the epitope of OspA should be studied. &amp;lt;scene name=&#039;Studio:G2SecL03/Ospafab-fab/1&#039; target=&amp;quot;complex&amp;quot;&amp;gt;LA-2&amp;lt;/scene&amp;gt; is a murine monoclonal antibody that &amp;lt;scene name=&#039;Studio:G2SecL03/Ospafab-interaction/1&#039; target=&amp;quot;complex&amp;quot;&amp;gt;binds strongly&amp;lt;/scene&amp;gt; to &amp;lt;scene name=&#039;Studio:G2SecL03/Ospafab-ospa/1&#039; target=&amp;quot;complex&amp;quot;&amp;gt;OspA&amp;lt;/scene&amp;gt;, and how effective a vaccine is correlated with LA-2 binding. 5&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;Structure of OspA&amp;lt;/h2&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;Structure load=&amp;quot;1fj1&amp;quot; size=&amp;quot;350&amp;quot; frame=&amp;quot;true&amp;quot; align=&amp;quot;right&amp;quot; name=&amp;quot;OspA-manip&amp;quot; caption=&amp;quot;Outer surface protein A (OspA) ([[1fj1|1FJ1]], chain F)&amp;quot; scene=&amp;quot;Studio:G2SecL03/Ospa_3loopscartoon/3&amp;quot;/&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
OspA is made up of 273 residues over 21 anti-parallel β-sheets and a single α-helix. It&#039;s folded conformation is divided into three main sections: a N-terminus &amp;quot;sandwich,&amp;quot; a central region comprising of several β-sheets and a C-terminus &amp;quot;barrel&amp;quot; domain.&amp;lt;ref name=&amp;quot;ding&amp;quot;&amp;gt;PMID: 11183781&amp;lt;/ref&amp;gt; The folded regions at its ends are connected by a single β-sheet layer in the middle, giving the protein the unique shape of a dumbell.&amp;lt;ref name=&amp;quot;makabe&amp;quot;&amp;gt;PMID: 16823038&amp;lt;/ref&amp;gt; &lt;br /&gt;
&lt;br /&gt;
There are &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops/4&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;three loops&amp;lt;/scene&amp;gt; at the C-terminus of OspA that are important in binding with the LA-2 Fab antibody, whose interactions provide great insight into vaccine research and effectiveness. Within these loops, there are &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-nor/3&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;three residues&amp;lt;/scene&amp;gt; &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-r/2&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;(show residue R-groups)&amp;lt;/scene&amp;gt; where there are distinct variations between the different strains of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; and serve as potential targets for the creation of a broader vaccine.&amp;lt;ref name=&amp;quot;ding&amp;quot;&amp;gt;PMID: 11183781&amp;lt;/ref&amp;gt; &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops3res/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;(display both the three loops and three residues together)&amp;lt;/scene&amp;gt; &lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-loop1/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Loop 1&amp;lt;/scene&amp;gt;, (residues 203-220), is important in showing variation amongst the different strains of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; as well as being optimally conformed for binding without steric hindrance. &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-loop2/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Loop 2&amp;lt;/scene&amp;gt; (residues 224-233) and &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-loop3/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Loop 3&amp;lt;/scene&amp;gt; (residues 246-257) are more strongly conserved than Loop 1 but also help to show some variation amongst strains. The LA-2 Fab antibody readily recognizes OspA from &amp;lt;i&amp;gt;B. burgdorferi&amp;lt;/i&amp;gt;, but does not recognize that from &amp;lt;i&amp;gt;B. afzelii&amp;lt;/i&amp;gt; or &amp;lt;i&amp;gt;B. garinii&amp;lt;/i&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
Between Bb. and Ba. genetic sequences are generally invariant, but two residues change between the species, ALA 208 &amp;lt;&amp;lt;ALA 208&amp;gt;&amp;gt; in Bb. is GLN in Ba., and ASN 251 &amp;lt;&amp;lt;ASN 251&amp;gt;&amp;gt; in Bb. is ALA in Ba.. Bg. has more variation and in addition to the previous two differences, has at least one more difference, where ALA 215 &amp;lt;&amp;lt;ALA 215&amp;gt;&amp;gt; in Bb. is LYS, Bg. sometimes also has a deletion at Bb.’s ALA 208. LA-2 and OspA of Bb. form a tight interface when binding, and the longer GLN sidechain found in Ba. and Bg. is more difficult to accommodate, causing less binding. A chimera that was weakly recognized by LA-2 was made with parts of loop 1 from Bb., and loops 2 and 3 from Bg. 5 Recently, a different kind of chimera has been made which combined the proximal region of Bb. and distal region of Ba., and was able to successfully protect mice from both species. 8&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h3&amp;gt;Reference List of Available Scenes for OspA&amp;lt;/h3&amp;gt;&lt;br /&gt;
&amp;lt;ul&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa_3loopscartoon/3&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Reset model&amp;lt;/scene&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops/4&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Three loops&amp;lt;/scene&amp;gt; in C-terminus (close up)&lt;br /&gt;
         &amp;lt;ul&amp;gt;&lt;br /&gt;
           &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-loop1/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Loop 1&amp;lt;/scene&amp;gt; (residues 203-220)&amp;lt;/li&amp;gt;&lt;br /&gt;
           &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-loop2/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Loop 2&amp;lt;/scene&amp;gt; (residues 224-233)&amp;lt;/li&amp;gt;&lt;br /&gt;
           &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-loop3/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Loop 3&amp;lt;/scene&amp;gt; (residues 246-257)&amp;lt;/li&amp;gt;&lt;br /&gt;
         &amp;lt;/ul&amp;gt;&lt;br /&gt;
     &amp;lt;/li&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-nor/3&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Three residues&amp;lt;/scene&amp;gt; in C-terminus (Ala208, Ala215 and Asn251 in &amp;lt;i&amp;gt;B. burgdorferi&amp;lt;/i&amp;gt;; also hides R-groups)&lt;br /&gt;
         &amp;lt;ul&amp;gt;&lt;br /&gt;
           &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-r/2&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Display R-groups&amp;lt;/scene&amp;gt; of Ala208, Ala215 and Asn251&amp;lt;/li&amp;gt;&lt;br /&gt;
         &amp;lt;/ul&amp;gt;&lt;br /&gt;
     &amp;lt;/li&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops3res/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Three loops and all three residues (with R-groups included)&amp;lt;/scene&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
&amp;lt;/ul&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;References&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;references /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;External Links&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;ul&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://www.who.int/ith/diseases/lyme/en/index.html World Health Organization: Lyme Disease]&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://www.ncbi.nlm.nih.gov/pubmedhealth/PMH0002296/ PubMed Health: Lyme Disease]&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://www.aldf.com/ American Lyme Disease Foundation]&lt;br /&gt;
&amp;lt;/ul&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;Proteopedia Page Contributors and Editors&amp;lt;/h2&amp;gt;&lt;br /&gt;
[http://proteopedia.org/wiki/index.php/User:Kimberly_Slade Kimberly Slade], [http://proteopedia.org/wiki/index.php/User:Cara_Lin Cara Lin], [http://proteopedia.org/wiki/index.php/User:Andrea_Mullen Andrea Mullen], [http://proteopedia.org/wiki/index.php/User:Jenny_Kim_Kim Jenny Kim Kim]&lt;br /&gt;
&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&lt;/div&gt;</summary>
		<author><name>Jenny Kim Kim</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=User:Marvin_O%27Neal/OspA&amp;diff=1384543</id>
		<title>User:Marvin O&#039;Neal/OspA</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=User:Marvin_O%27Neal/OspA&amp;diff=1384543"/>
		<updated>2012-05-02T17:05:20Z</updated>

		<summary type="html">&lt;p&gt;Jenny Kim Kim: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;Structure load=&amp;quot;1fj1&amp;quot; size=&amp;quot;350&amp;quot; frame=&amp;quot;true&amp;quot; align=&amp;quot;right&amp;quot; name=&amp;quot;OspA-secondary&amp;quot; caption=&amp;quot;Outer surface protein A (OspA) ([[1fj1|1FJ1]], chain F) showing secondary structures.&amp;quot; scene=&amp;quot;Studio:G2SecL03/Ospa_default/5&amp;quot;/&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
&amp;lt;b&amp;gt;Outer Surface Protein A (OspA)&amp;lt;/b&amp;gt; is a major lipoprotein found on the surface of [http://en.wikipedia.org/wiki/Spirochaete spirochetes] from the genus [http://en.wikipedia.org/wiki/Borrelia &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt;] and is comprised of 21 anti-parallel β-sheets and a single α-helix. OspA&#039;s expression is regulated at different points in time, from being downregulated during the tick&#039;s feeding process on its host to being upregulated in the host&#039;s cerebrospinal fluid (CSF) to induce inflammatory response, resulting in acute Lyme [http://en.wikipedia.org/wiki/Neuroborreliosis neuroborreliosis]. OspA has also been used as a vector in working towards the development of a vaccine for [http://en.wikipedia.org/wiki/Lyme_disease Lyme disease].&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;Introduction&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Lyme disease is caused by the spirochete &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; and spread via hard-bodied ticks belonging to the family [http://en.wikipedia.org/wiki/Ixodidae &amp;lt;i&amp;gt;Ixodidae&amp;lt;/i&amp;gt;]. The &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; spirochetes are motile, helical organisms have several lipoproteins exposed on the surfaces of their membranes that invoke a response from host immune systems. The predominant group of these is classified as the outer surface proteins (Osps). Both the pathogenesis of Lyme disease as well as the host&#039;s immune response stem from the effects of the spirochete&#039;s presence and involvement in the system.&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
The major strain of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; in the United States is [http://en.wikipedia.org/wiki/Borrelia_burgdorferi &amp;lt;i&amp;gt;Borrelia burgdorferi&amp;lt;/i&amp;gt;] &amp;lt;i&amp;gt;sensu stricto (Bb.)&amp;lt;/i&amp;gt;, with 20-100 cases of Lyme disease being reported per 100,000 people. In Europe, Lyme disease cases are more prevalent, with 100-130 diagnoses per 100,000 people, but are caused by the spirochetes [http://en.wikipedia.org/wiki/Borrelia_afzelii &amp;lt;i&amp;gt;Borrelia afzelii (Ba.)&amp;lt;/i&amp;gt;] and [http://en.wikipedia.org/wiki/Borrelia_garinii &amp;lt;i&amp;gt;Borrelia garinii (Bg.)&amp;lt;/i&amp;gt;] in addition to &amp;lt;i&amp;gt;B. burgdorferi&amp;lt;/i&amp;gt;.&amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;ding&amp;quot;&amp;gt;PMID: 11183781&amp;lt;/ref&amp;gt; &lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Lyme disease is a debilitating condition that begins with a characteristic bullseye rash known as an [http://en.wikipedia.org/wiki/Erythema_chronicum_migrans erythema migrans (EM)] as well as the development of lesions on other parts of the body, not just at the site of the tick&#039;s attachment to its host. Secondary stage symptoms include affecting the heart, joints, and both the central and peripheral nervous systems. &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; has two major outer surface lipoproteins that are involved in Lyme disease: OspA and OspB. OspA is used in adhering to the tick&#039;s gut by binding with the tick receptor (TROSPA) &lt;br /&gt;
&lt;br /&gt;
During feeding, OspA is downregulated in order to evade an immune response from the incoming host blood into the gut, releasing the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; from the gut wall and migrating into the tick&#039;s salivary glands, thereby allowing it to enter the host through the bite. This is evidenced by the fact that patients with Lyme disease have been found to not possess OspA antibodies in the early stages of the disease.&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt; OspA is the protein most related to acute Lyme neuroborreliosis (LNB), the neurological manifestations of Lyme disease.  &lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Once inside the host, the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; has a great number of mechanisms available to actively suppress the host&#039;s immune system response and neutralize its effector mechanisms, such as the expression of another outer surface protein, OspC, which prevents susceptibility to the host&#039;s [http://en.wikipedia.org/wiki/Innate_immune_system innate immunity] and [http://en.wikipedia.org/wiki/Complement_system complement systems]. Additionally, &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; is capable of suppressing many of its surface proteins to reduce its detectability, but can also utilize protective means by temporarily expressing them when needed.&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;OspA &amp;amp; Lyme Disease&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Acute Lyme Neuroborreliosis (LNB) is part of the second stage of Lyme disease in which the spirochete invades the peripheral and central nervous systems (CNS). Symptoms of LNB include: Bannwarth’s Syndrome, Lymphocytic Meningitis, and [http://www.rightdiagnosis.com/sym/cranial_neuritis.htm Cranial] and [http://www.ncbi.nlm.nih.gov/pubmedhealth/PMH0001619/ Peripheral Neuritis]. The presence of OspA in the cerebrospinal fluid (CSF) is responsible for this complex inflammatory response in the brain that leads to the neuroborreliosis.&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
[[Image:G2L03-OspA-mechanism.jpg|thumb|300px|Mechanism of the host inflammatory response to OspA]]&lt;br /&gt;
&lt;br /&gt;
There are six steps involved in the host&#039;s inflammatory response to OspA: &amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt;&amp;lt;br&amp;gt;&lt;br /&gt;
&amp;lt;ol&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;When the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; enter the host’s CNS they encounter several different types of immune cells such as [http://en.wikipedia.org/wiki/Monocyte monocytes], [http://en.wikipedia.org/wiki/Macrophages macrophages], and [http://en.wikipedia.org/wiki/Dendritic_cells dendritic cells]. While in the CSF, outer surface protein A (OspA) is upregulated and it’s increased expression promotes recognition by a specific receptor on a monocyte.&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;The OspA-bound monocyte then releases proinflammatory [http://en.wikipedia.org/wiki/Cytokine cytokines] (i.e. [http://en.wikipedia.org/wiki/Interferon interferon]), as well as [http://en.wikipedia.org/wiki/Chemokine chemokines], such as [http://en.wikipedia.org/wiki/CXCL13 CXCL13]. In patients with LNB, there is an observed increase in the levels of these cytokines and chemokines in their CSF. The production of chemokines leads to the recruitment of other immune cells to the site of infection.&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://en.wikipedia.org/wiki/B_lymphocyte B-lymphocytes] respond to the new concentration gradient of CXCL13 between the blood and CSF and migrate into the CSF.&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;B-lymphocytes undergo [http://en.wikipedia.org/wiki/Receptor-mediated_endocytosis receptor-mediated endocytosis], consuming the OspA antigens present in the CSF, thereby triggering its activation. The B-lymphocytes then are able to differentiate and mature into  [http://en.wikipedia.org/wiki/Plasma_cells plasma cells].&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;The plasma cells create large quantities of anti-OspA antibodies specific to this strain of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; and release them into the CSF.&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;The anti-OspA antibodies will then bind to the OspA on the spirochete’s membrane, thus killing the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt;.&amp;lt;/li&amp;gt;&lt;br /&gt;
&amp;lt;/ol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
This process is two-sided in the sense that the OspA aids in the pathogenesis of new symptoms (neuroborreliosis) through the chemokine’s actions, as well as initiating the signaling cascade to destroy itself.&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;OspA Vaccination&amp;lt;/h2&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;Structure load=&amp;quot;1fj1&amp;quot; size=&amp;quot;350&amp;quot; frame=&amp;quot;true&amp;quot; align=&amp;quot;right&amp;quot; name=&amp;quot;complex&amp;quot; caption=&amp;quot;Outer surface protein A (OspA) in complex with the LA-2 Fab antibody ([[1fj1|1FJ1]]).&amp;quot; scene=&amp;quot;Studio:G2SecL03/Ospafab-orig/1&amp;quot;/&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Risk of developing Lyme disease can be mitigated by staying clear of areas with populations of ticks, wearing proper attire to minimize easily bitten areas of the body, and using insect repellents containing [http://en.wikipedia.org/wiki/DEET DEET] (N,N-diethy-m-toluamide). However, another effective means for prevention could be possible by using an outer surface protein from &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; in the creation of a vaccine.&amp;lt;ref name=&amp;quot;nigrovic&amp;quot;&amp;gt;PMID: 16893489&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
The membrane composition of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; is abundant in both OspA and OspB, and the two proteins share a 53% similarity in their primary sequences. Both OspA and OspB are expressed in the tick&#039;s gut and downregulated during feeding and aid in its survivability; however, OspA is overall less varied and reactive than OspB, which has greater variability.&amp;lt;ref name=&amp;quot;becker&amp;quot;&amp;gt;PMID: 15713683&amp;lt;/ref&amp;gt; The relatively conserved sequence of OspA thus lends itself better to study and application toward the development of a vaccine for a broader range of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; strains in the treatment of Lyme disease than that of OspB. The first vaccine used a purified recombinant form of OspA and functioned in blocking transmission of the spirochetes expressing OspA from tick to host during feeding, killing them while still attached to the tick&#039;s gut.&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;battisti&amp;quot;&amp;gt;PMID: 18779341&amp;lt;/ref&amp;gt; The vaccine, Lymerix, had shown 76% and 92% effectiveness in separate clinical trials in which patients were treated for two years following a three-dose schedule. However, the vaccination was suspended from use in 2002 when opponents claimed the [http://en.wikipedia.org/wiki/Immunoglobulin_G IgG antibodies] for OspA were associated with the onset of severe chronic arthritis, as well as other side effects affecting immunity.&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;plotkin&amp;quot;&amp;gt;PMID: 21217175&amp;lt;/ref&amp;gt;  This fact, in conjunction with the desire for a more widespread vaccine treating multiple strains of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt;, has spurred research towards a new vaccine.&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
To address this problem of international protection it would be helpful to create a chimera, mixing the OspA of different species. In order to do this the epitope of OspA should be studied. &amp;lt;scene name=&#039;Studio:G2SecL03/Ospafab-fab/1&#039; target=&amp;quot;complex&amp;quot;&amp;gt;LA-2&amp;lt;/scene&amp;gt; is a murine monoclonal antibody that binds strongly &amp;lt;&amp;lt;SHOW INTERACTION HIGHLIGHTED (ZOOMED IN) ON 1FJ1&amp;gt;&amp;gt; to &amp;lt;scene name=&#039;Studio:G2SecL03/Ospafab-ospa/1&#039; target=&amp;quot;complex&amp;quot;&amp;gt;OspA&amp;lt;/scene&amp;gt;, and how effective a vaccine is correlated with LA-2 binding. 5&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;Structure of OspA&amp;lt;/h2&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;Structure load=&amp;quot;1fj1&amp;quot; size=&amp;quot;350&amp;quot; frame=&amp;quot;true&amp;quot; align=&amp;quot;right&amp;quot; name=&amp;quot;OspA-manip&amp;quot; caption=&amp;quot;Outer surface protein A (OspA) ([[1fj1|1FJ1]], chain F)&amp;quot; scene=&amp;quot;Studio:G2SecL03/Ospa_3loopscartoon/3&amp;quot;/&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
OspA is made up of 273 residues over 21 anti-parallel β-sheets and a single α-helix. It&#039;s folded conformation is divided into three main sections: a N-terminus &amp;quot;sandwich,&amp;quot; a central region comprising of several β-sheets and a C-terminus &amp;quot;barrel&amp;quot; domain.&amp;lt;ref name=&amp;quot;ding&amp;quot;&amp;gt;PMID: 11183781&amp;lt;/ref&amp;gt; The folded regions at its ends are connected by a single β-sheet layer in the middle, giving the protein the unique shape of a dumbell.&amp;lt;ref name=&amp;quot;makabe&amp;quot;&amp;gt;PMID: 16823038&amp;lt;/ref&amp;gt; &lt;br /&gt;
&lt;br /&gt;
There are &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops/4&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;three loops&amp;lt;/scene&amp;gt; at the C-terminus of OspA that are important in binding with the LA-2 Fab antibody, whose interactions provide great insight into vaccine research and effectiveness. Within these loops, there are &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-nor/3&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;three residues&amp;lt;/scene&amp;gt; &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-r/2&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;(show residue R-groups)&amp;lt;/scene&amp;gt; where there are distinct variations between the different strains of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; and serve as potential targets for the creation of a broader vaccine.&amp;lt;ref name=&amp;quot;ding&amp;quot;&amp;gt;PMID: 11183781&amp;lt;/ref&amp;gt; &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops3res/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;(display both the three loops and three residues together)&amp;lt;/scene&amp;gt; &lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-loop1/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Loop 1&amp;lt;/scene&amp;gt;, (residues 203-220), is important in showing variation amongst the different strains of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; as well as being optimally conformed for binding without steric hindrance. &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-loop2/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Loop 2&amp;lt;/scene&amp;gt; (residues 224-233) and &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-loop3/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Loop 3&amp;lt;/scene&amp;gt; (residues 246-257) are more strongly conserved than Loop 1 but also help to show some variation amongst strains. The LA-2 Fab antibody readily recognizes OspA from &amp;lt;i&amp;gt;B. burgdorferi&amp;lt;/i&amp;gt;, but does not recognize that from &amp;lt;i&amp;gt;B. afzelii&amp;lt;/i&amp;gt; or &amp;lt;i&amp;gt;B. garinii&amp;lt;/i&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
Between Bb. and Ba. genetic sequences are generally invariant, but two residues change between the species, ALA 208 &amp;lt;&amp;lt;ALA 208&amp;gt;&amp;gt; in Bb. is GLN in Ba., and ASN 251 &amp;lt;&amp;lt;ASN 251&amp;gt;&amp;gt; in Bb. is ALA in Ba.. Bg. has more variation and in addition to the previous two differences, has at least one more difference, where ALA 215 &amp;lt;&amp;lt;ALA 215&amp;gt;&amp;gt; in Bb. is LYS, Bg. sometimes also has a deletion at Bb.’s ALA 208. LA-2 and OspA of Bb. form a tight interface when binding, and the longer GLN sidechain found in Ba. and Bg. is more difficult to accommodate, causing less binding. A chimera that was weakly recognized by LA-2 was made with parts of loop 1 from Bb., and loops 2 and 3 from Bg. 5 Recently, a different kind of chimera has been made which combined the proximal region of Bb. and distal region of Ba., and was able to successfully protect mice from both species. 8&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h3&amp;gt;Reference List of Available Scenes for OspA&amp;lt;/h3&amp;gt;&lt;br /&gt;
&amp;lt;ul&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa_3loopscartoon/3&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Reset model&amp;lt;/scene&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops/4&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Three loops&amp;lt;/scene&amp;gt; in C-terminus (close up)&lt;br /&gt;
         &amp;lt;ul&amp;gt;&lt;br /&gt;
           &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-loop1/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Loop 1&amp;lt;/scene&amp;gt; (residues 203-220)&amp;lt;/li&amp;gt;&lt;br /&gt;
           &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-loop2/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Loop 2&amp;lt;/scene&amp;gt; (residues 224-233)&amp;lt;/li&amp;gt;&lt;br /&gt;
           &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-loop3/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Loop 3&amp;lt;/scene&amp;gt; (residues 246-257)&amp;lt;/li&amp;gt;&lt;br /&gt;
         &amp;lt;/ul&amp;gt;&lt;br /&gt;
     &amp;lt;/li&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-nor/3&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Three residues&amp;lt;/scene&amp;gt; in C-terminus (Ala208, Ala215 and Asn251 in &amp;lt;i&amp;gt;B. burgdorferi&amp;lt;/i&amp;gt;; also hides R-groups)&lt;br /&gt;
         &amp;lt;ul&amp;gt;&lt;br /&gt;
           &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-r/2&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Display R-groups&amp;lt;/scene&amp;gt; of Ala208, Ala215 and Asn251&amp;lt;/li&amp;gt;&lt;br /&gt;
         &amp;lt;/ul&amp;gt;&lt;br /&gt;
     &amp;lt;/li&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops3res/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Three loops and all three residues (with R-groups included)&amp;lt;/scene&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
&amp;lt;/ul&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;References&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;references /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;External Links&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;ul&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://www.who.int/ith/diseases/lyme/en/index.html World Health Organization: Lyme Disease]&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://www.ncbi.nlm.nih.gov/pubmedhealth/PMH0002296/ PubMed Health: Lyme Disease]&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://www.aldf.com/ American Lyme Disease Foundation]&lt;br /&gt;
&amp;lt;/ul&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;Proteopedia Page Contributors and Editors&amp;lt;/h2&amp;gt;&lt;br /&gt;
[http://proteopedia.org/wiki/index.php/User:Kimberly_Slade Kimberly Slade], [http://proteopedia.org/wiki/index.php/User:Cara_Lin Cara Lin], [http://proteopedia.org/wiki/index.php/User:Andrea_Mullen Andrea Mullen], [http://proteopedia.org/wiki/index.php/User:Jenny_Kim_Kim Jenny Kim Kim]&lt;br /&gt;
&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&lt;/div&gt;</summary>
		<author><name>Jenny Kim Kim</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=User:Marvin_O%27Neal/OspA&amp;diff=1384541</id>
		<title>User:Marvin O&#039;Neal/OspA</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=User:Marvin_O%27Neal/OspA&amp;diff=1384541"/>
		<updated>2012-05-02T17:04:03Z</updated>

		<summary type="html">&lt;p&gt;Jenny Kim Kim: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;Structure load=&amp;quot;1fj1&amp;quot; size=&amp;quot;350&amp;quot; frame=&amp;quot;true&amp;quot; align=&amp;quot;right&amp;quot; name=&amp;quot;OspA-secondary&amp;quot; caption=&amp;quot;Outer surface protein A (OspA) ([[1fj1|1FJ1]], chain F) showing secondary structures.&amp;quot; scene=&amp;quot;Studio:G2SecL03/Ospa_default/5&amp;quot;/&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
&amp;lt;b&amp;gt;Outer Surface Protein A (OspA)&amp;lt;/b&amp;gt; is a major lipoprotein found on the surface of [http://en.wikipedia.org/wiki/Spirochaete spirochetes] from the genus [http://en.wikipedia.org/wiki/Borrelia &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt;] and is comprised of 21 anti-parallel β-sheets and a single α-helix. OspA&#039;s expression is regulated at different points in time, from being downregulated during the tick&#039;s feeding process on its host to being upregulated in the host&#039;s cerebrospinal fluid (CSF) to induce inflammatory response, resulting in acute Lyme [http://en.wikipedia.org/wiki/Neuroborreliosis neuroborreliosis]. OspA has also been used as a vector in working towards the development of a vaccine for [http://en.wikipedia.org/wiki/Lyme_disease Lyme disease].&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;Introduction&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Lyme disease is caused by the spirochete &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; and spread via hard-bodied ticks belonging to the family [http://en.wikipedia.org/wiki/Ixodidae &amp;lt;i&amp;gt;Ixodidae&amp;lt;/i&amp;gt;]. The &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; spirochetes are motile, helical organisms have several lipoproteins exposed on the surfaces of their membranes that invoke a response from host immune systems. The predominant group of these is classified as the outer surface proteins (Osps). Both the pathogenesis of Lyme disease as well as the host&#039;s immune response stem from the effects of the spirochete&#039;s presence and involvement in the system.&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
The major strain of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; in the United States is [http://en.wikipedia.org/wiki/Borrelia_burgdorferi &amp;lt;i&amp;gt;Borrelia burgdorferi&amp;lt;/i&amp;gt;] &amp;lt;i&amp;gt;sensu stricto (Bb.)&amp;lt;/i&amp;gt;, with 20-100 cases of Lyme disease being reported per 100,000 people. In Europe, Lyme disease cases are more prevalent, with 100-130 diagnoses per 100,000 people, but are caused by the spirochetes [http://en.wikipedia.org/wiki/Borrelia_afzelii &amp;lt;i&amp;gt;Borrelia afzelii (Ba.)&amp;lt;/i&amp;gt;] and [http://en.wikipedia.org/wiki/Borrelia_garinii &amp;lt;i&amp;gt;Borrelia garinii (Bg.)&amp;lt;/i&amp;gt;] in addition to &amp;lt;i&amp;gt;B. burgdorferi&amp;lt;/i&amp;gt;.&amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;ding&amp;quot;&amp;gt;PMID: 11183781&amp;lt;/ref&amp;gt; &lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Lyme disease is a debilitating condition that begins with a characteristic bullseye rash known as an [http://en.wikipedia.org/wiki/Erythema_chronicum_migrans erythema migrans (EM)] as well as the development of lesions on other parts of the body, not just at the site of the tick&#039;s attachment to its host. Secondary stage symptoms include affecting the heart, joints, and both the central and peripheral nervous systems. &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; has two major outer surface lipoproteins that are involved in Lyme disease: OspA and OspB. OspA is used in adhering to the tick&#039;s gut by binding with the tick receptor (TROSPA) &lt;br /&gt;
&lt;br /&gt;
During feeding, OspA is downregulated in order to evade an immune response from the incoming host blood into the gut, releasing the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; from the gut wall and migrating into the tick&#039;s salivary glands, thereby allowing it to enter the host through the bite. This is evidenced by the fact that patients with Lyme disease have been found to not possess OspA antibodies in the early stages of the disease.&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt; OspA is the protein most related to acute Lyme neuroborreliosis (LNB), the neurological manifestations of Lyme disease.  &lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Once inside the host, the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; has a great number of mechanisms available to actively suppress the host&#039;s immune system response and neutralize its effector mechanisms, such as the expression of another outer surface protein, OspC, which prevents susceptibility to the host&#039;s [http://en.wikipedia.org/wiki/Innate_immune_system innate immunity] and [http://en.wikipedia.org/wiki/Complement_system complement systems]. Additionally, &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; is capable of suppressing many of its surface proteins to reduce its detectability, but can also utilize protective means by temporarily expressing them when needed.&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;OspA &amp;amp; Lyme Disease&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Acute Lyme Neuroborreliosis (LNB) is part of the second stage of Lyme disease in which the spirochete invades the peripheral and central nervous systems (CNS). Symptoms of LNB include: Bannwarth’s Syndrome, Lymphocytic Meningitis, and [http://www.rightdiagnosis.com/sym/cranial_neuritis.htm Cranial] and [http://www.ncbi.nlm.nih.gov/pubmedhealth/PMH0001619/ Peripheral Neuritis]. The presence of OspA in the cerebrospinal fluid (CSF) is responsible for this complex inflammatory response in the brain that leads to the neuroborreliosis.&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
[[Image:G2L03-OspA-mechanism.jpg|thumb|300px|Mechanism of the host inflammatory response to OspA]]&lt;br /&gt;
&lt;br /&gt;
There are six steps involved in the host&#039;s inflammatory response to OspA: &amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt;&amp;lt;br&amp;gt;&lt;br /&gt;
&amp;lt;ol&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;When the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; enter the host’s CNS they encounter several different types of immune cells such as [http://en.wikipedia.org/wiki/Monocyte monocytes], [http://en.wikipedia.org/wiki/Macrophages macrophages], and [http://en.wikipedia.org/wiki/Dendritic_cells dendritic cells]. While in the CSF, outer surface protein A (OspA) is upregulated and it’s increased expression promotes recognition by a specific receptor on a monocyte.&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;The OspA-bound monocyte then releases proinflammatory [http://en.wikipedia.org/wiki/Cytokine cytokines] (i.e. [http://en.wikipedia.org/wiki/Interferon interferon]), as well as [http://en.wikipedia.org/wiki/Chemokine chemokines], such as [http://en.wikipedia.org/wiki/CXCL13 CXCL13]. In patients with LNB, there is an observed increase in the levels of these cytokines and chemokines in their CSF. The production of chemokines leads to the recruitment of other immune cells to the site of infection.&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://en.wikipedia.org/wiki/B_lymphocyte B-lymphocytes] respond to the new concentration gradient of CXCL13 between the blood and CSF and migrate into the CSF.&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;B-lymphocytes undergo [http://en.wikipedia.org/wiki/Receptor-mediated_endocytosis receptor-mediated endocytosis], consuming the OspA antigens present in the CSF, thereby triggering its activation. The B-lymphocytes then are able to differentiate and mature into  [http://en.wikipedia.org/wiki/Plasma_cells plasma cells].&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;The plasma cells create large quantities of anti-OspA antibodies specific to this strain of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; and release them into the CSF.&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;The anti-OspA antibodies will then bind to the OspA on the spirochete’s membrane, thus killing the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt;.&amp;lt;/li&amp;gt;&lt;br /&gt;
&amp;lt;/ol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
This process is two-sided in the sense that the OspA aids in the pathogenesis of new symptoms (neuroborreliosis) through the chemokine’s actions, as well as initiating the signaling cascade to destroy itself.&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;OspA Vaccination&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Risk of developing Lyme disease can be mitigated by staying clear of areas with populations of ticks, wearing proper attire to minimize easily bitten areas of the body, and using insect repellents containing [http://en.wikipedia.org/wiki/DEET DEET] (N,N-diethy-m-toluamide). However, another effective means for prevention could be possible by using an outer surface protein from &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; in the creation of a vaccine.&amp;lt;ref name=&amp;quot;nigrovic&amp;quot;&amp;gt;PMID: 16893489&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
The membrane composition of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; is abundant in both OspA and OspB, and the two proteins share a 53% similarity in their primary sequences. Both OspA and OspB are expressed in the tick&#039;s gut and downregulated during feeding and aid in its survivability; however, OspA is overall less varied and reactive than OspB, which has greater variability.&amp;lt;ref name=&amp;quot;becker&amp;quot;&amp;gt;PMID: 15713683&amp;lt;/ref&amp;gt; The relatively conserved sequence of OspA thus lends itself better to study and application toward the development of a vaccine for a broader range of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; strains in the treatment of Lyme disease than that of OspB. The first vaccine used a purified recombinant form of OspA and functioned in blocking transmission of the spirochetes expressing OspA from tick to host during feeding, killing them while still attached to the tick&#039;s gut.&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;battisti&amp;quot;&amp;gt;PMID: 18779341&amp;lt;/ref&amp;gt; The vaccine, Lymerix, had shown 76% and 92% effectiveness in separate clinical trials in which patients were treated for two years following a three-dose schedule. However, the vaccination was suspended from use in 2002 when opponents claimed the [http://en.wikipedia.org/wiki/Immunoglobulin_G IgG antibodies] for OspA were associated with the onset of severe chronic arthritis, as well as other side effects affecting immunity.&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;plotkin&amp;quot;&amp;gt;PMID: 21217175&amp;lt;/ref&amp;gt;  This fact, in conjunction with the desire for a more widespread vaccine treating multiple strains of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt;, has spurred research towards a new vaccine.&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;Structure load=&amp;quot;1fj1&amp;quot; size=&amp;quot;350&amp;quot; frame=&amp;quot;true&amp;quot; align=&amp;quot;right&amp;quot; name=&amp;quot;complex&amp;quot; caption=&amp;quot;Outer surface protein A (OspA) in complex with the LA-2 Fab antibody ([[1fj1|1FJ1]]).&amp;quot; scene=&amp;quot;Studio:G2SecL03/Ospafab-orig/1&amp;quot;/&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
To address this problem of international protection it would be helpful to create a chimera, mixing the OspA of different species. In order to do this the epitope of OspA should be studied. &amp;lt;scene name=&#039;Studio:G2SecL03/Ospafab-fab/1&#039; target=&amp;quot;complex&amp;quot;&amp;gt;LA-2&amp;lt;/scene&amp;gt; is a murine monoclonal antibody that binds strongly &amp;lt;&amp;lt;SHOW INTERACTION HIGHLIGHTED (ZOOMED IN) ON 1FJ1&amp;gt;&amp;gt; to &amp;lt;scene name=&#039;Studio:G2SecL03/Ospafab-ospa/1&#039; target=&amp;quot;complex&amp;quot;&amp;gt;OspA&amp;lt;/scene&amp;gt;, and how effective a vaccine is correlated with LA-2 binding. 5&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;Structure of OspA&amp;lt;/h2&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;Structure load=&amp;quot;1fj1&amp;quot; size=&amp;quot;350&amp;quot; frame=&amp;quot;true&amp;quot; align=&amp;quot;right&amp;quot; name=&amp;quot;OspA-manip&amp;quot; caption=&amp;quot;Outer surface protein A (OspA) ([[1fj1|1FJ1]], chain F)&amp;quot; scene=&amp;quot;Studio:G2SecL03/Ospa_3loopscartoon/3&amp;quot;/&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
OspA is made up of 273 residues over 21 anti-parallel β-sheets and a single α-helix. It&#039;s folded conformation is divided into three main sections: a N-terminus &amp;quot;sandwich,&amp;quot; a central region comprising of several β-sheets and a C-terminus &amp;quot;barrel&amp;quot; domain.&amp;lt;ref name=&amp;quot;ding&amp;quot;&amp;gt;PMID: 11183781&amp;lt;/ref&amp;gt; The folded regions at its ends are connected by a single β-sheet layer in the middle, giving the protein the unique shape of a dumbell.&amp;lt;ref name=&amp;quot;makabe&amp;quot;&amp;gt;PMID: 16823038&amp;lt;/ref&amp;gt; &lt;br /&gt;
&lt;br /&gt;
There are &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops/4&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;three loops&amp;lt;/scene&amp;gt; at the C-terminus of OspA that are important in binding with the LA-2 Fab antibody, whose interactions provide great insight into vaccine research and effectiveness. Within these loops, there are &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-nor/3&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;three residues&amp;lt;/scene&amp;gt; &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-r/2&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;(show residue R-groups)&amp;lt;/scene&amp;gt; where there are distinct variations between the different strains of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; and serve as potential targets for the creation of a broader vaccine.&amp;lt;ref name=&amp;quot;ding&amp;quot;&amp;gt;PMID: 11183781&amp;lt;/ref&amp;gt; &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops3res/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;(display both the three loops and three residues together)&amp;lt;/scene&amp;gt; &lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-loop1/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Loop 1&amp;lt;/scene&amp;gt;, (residues 203-220), is important in showing variation amongst the different strains of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; as well as being optimally conformed for binding without steric hindrance. &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-loop2/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Loop 2&amp;lt;/scene&amp;gt; (residues 224-233) and &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-loop3/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Loop 3&amp;lt;/scene&amp;gt; (residues 246-257) are more strongly conserved than Loop 1 but also help to show some variation amongst strains. The LA-2 Fab antibody readily recognizes OspA from &amp;lt;i&amp;gt;B. burgdorferi&amp;lt;/i&amp;gt;, but does not recognize that from &amp;lt;i&amp;gt;B. afzelii&amp;lt;/i&amp;gt; or &amp;lt;i&amp;gt;B. garinii&amp;lt;/i&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
Between Bb. and Ba. genetic sequences are generally invariant, but two residues change between the species, ALA 208 &amp;lt;&amp;lt;ALA 208&amp;gt;&amp;gt; in Bb. is GLN in Ba., and ASN 251 &amp;lt;&amp;lt;ASN 251&amp;gt;&amp;gt; in Bb. is ALA in Ba.. Bg. has more variation and in addition to the previous two differences, has at least one more difference, where ALA 215 &amp;lt;&amp;lt;ALA 215&amp;gt;&amp;gt; in Bb. is LYS, Bg. sometimes also has a deletion at Bb.’s ALA 208. LA-2 and OspA of Bb. form a tight interface when binding, and the longer GLN sidechain found in Ba. and Bg. is more difficult to accommodate, causing less binding. A chimera that was weakly recognized by LA-2 was made with parts of loop 1 from Bb., and loops 2 and 3 from Bg. 5 Recently, a different kind of chimera has been made which combined the proximal region of Bb. and distal region of Ba., and was able to successfully protect mice from both species. 8&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h3&amp;gt;Reference List of Available Scenes for OspA&amp;lt;/h3&amp;gt;&lt;br /&gt;
&amp;lt;ul&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa_3loopscartoon/3&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Reset model&amp;lt;/scene&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops/4&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Three loops&amp;lt;/scene&amp;gt; in C-terminus (close up)&lt;br /&gt;
         &amp;lt;ul&amp;gt;&lt;br /&gt;
           &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-loop1/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Loop 1&amp;lt;/scene&amp;gt; (residues 203-220)&amp;lt;/li&amp;gt;&lt;br /&gt;
           &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-loop2/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Loop 2&amp;lt;/scene&amp;gt; (residues 224-233)&amp;lt;/li&amp;gt;&lt;br /&gt;
           &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-loop3/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Loop 3&amp;lt;/scene&amp;gt; (residues 246-257)&amp;lt;/li&amp;gt;&lt;br /&gt;
         &amp;lt;/ul&amp;gt;&lt;br /&gt;
     &amp;lt;/li&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-nor/3&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Three residues&amp;lt;/scene&amp;gt; in C-terminus (Ala208, Ala215 and Asn251 in &amp;lt;i&amp;gt;B. burgdorferi&amp;lt;/i&amp;gt;; also hides R-groups)&lt;br /&gt;
         &amp;lt;ul&amp;gt;&lt;br /&gt;
           &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-r/2&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Display R-groups&amp;lt;/scene&amp;gt; of Ala208, Ala215 and Asn251&amp;lt;/li&amp;gt;&lt;br /&gt;
         &amp;lt;/ul&amp;gt;&lt;br /&gt;
     &amp;lt;/li&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops3res/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Three loops and all three residues (with R-groups included)&amp;lt;/scene&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
&amp;lt;/ul&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;References&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;references /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;External Links&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;ul&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://www.who.int/ith/diseases/lyme/en/index.html World Health Organization: Lyme Disease]&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://www.ncbi.nlm.nih.gov/pubmedhealth/PMH0002296/ PubMed Health: Lyme Disease]&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://www.aldf.com/ American Lyme Disease Foundation]&lt;br /&gt;
&amp;lt;/ul&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;Proteopedia Page Contributors and Editors&amp;lt;/h2&amp;gt;&lt;br /&gt;
[http://proteopedia.org/wiki/index.php/User:Kimberly_Slade Kimberly Slade], [http://proteopedia.org/wiki/index.php/User:Cara_Lin Cara Lin], [http://proteopedia.org/wiki/index.php/User:Andrea_Mullen Andrea Mullen], [http://proteopedia.org/wiki/index.php/User:Jenny_Kim_Kim Jenny Kim Kim]&lt;br /&gt;
&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&lt;/div&gt;</summary>
		<author><name>Jenny Kim Kim</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=User:Marvin_O%27Neal/OspA&amp;diff=1384539</id>
		<title>User:Marvin O&#039;Neal/OspA</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=User:Marvin_O%27Neal/OspA&amp;diff=1384539"/>
		<updated>2012-05-02T17:03:07Z</updated>

		<summary type="html">&lt;p&gt;Jenny Kim Kim: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;Structure load=&amp;quot;1fj1&amp;quot; size=&amp;quot;350&amp;quot; frame=&amp;quot;true&amp;quot; align=&amp;quot;right&amp;quot; name=&amp;quot;OspA-secondary&amp;quot; caption=&amp;quot;Outer surface protein A (OspA) ([[1fj1|1FJ1]], chain F) showing secondary structures.&amp;quot; scene=&amp;quot;Studio:G2SecL03/Ospa_default/5&amp;quot;/&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
&amp;lt;b&amp;gt;Outer Surface Protein A (OspA)&amp;lt;/b&amp;gt; is a major lipoprotein found on the surface of [http://en.wikipedia.org/wiki/Spirochaete spirochetes] from the genus [http://en.wikipedia.org/wiki/Borrelia &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt;] and is comprised of 21 anti-parallel β-sheets and a single α-helix. OspA&#039;s expression is regulated at different points in time, from being downregulated during the tick&#039;s feeding process on its host to being upregulated in the host&#039;s cerebrospinal fluid (CSF) to induce inflammatory response, resulting in acute Lyme [http://en.wikipedia.org/wiki/Neuroborreliosis neuroborreliosis]. OspA has also been used as a vector in working towards the development of a vaccine for [http://en.wikipedia.org/wiki/Lyme_disease Lyme disease].&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;Introduction&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Lyme disease is caused by the spirochete &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; and spread via hard-bodied ticks belonging to the family [http://en.wikipedia.org/wiki/Ixodidae &amp;lt;i&amp;gt;Ixodidae&amp;lt;/i&amp;gt;]. The &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; spirochetes are motile, helical organisms have several lipoproteins exposed on the surfaces of their membranes that invoke a response from host immune systems. The predominant group of these is classified as the outer surface proteins (Osps). Both the pathogenesis of Lyme disease as well as the host&#039;s immune response stem from the effects of the spirochete&#039;s presence and involvement in the system.&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
The major strain of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; in the United States is [http://en.wikipedia.org/wiki/Borrelia_burgdorferi &amp;lt;i&amp;gt;Borrelia burgdorferi&amp;lt;/i&amp;gt;] &amp;lt;i&amp;gt;sensu stricto (Bb.)&amp;lt;/i&amp;gt;, with 20-100 cases of Lyme disease being reported per 100,000 people. In Europe, Lyme disease cases are more prevalent, with 100-130 diagnoses per 100,000 people, but are caused by the spirochetes [http://en.wikipedia.org/wiki/Borrelia_afzelii &amp;lt;i&amp;gt;Borrelia afzelii (Ba.)&amp;lt;/i&amp;gt;] and [http://en.wikipedia.org/wiki/Borrelia_garinii &amp;lt;i&amp;gt;Borrelia garinii (Bg.)&amp;lt;/i&amp;gt;] in addition to &amp;lt;i&amp;gt;B. burgdorferi&amp;lt;/i&amp;gt;.&amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;ding&amp;quot;&amp;gt;PMID: 11183781&amp;lt;/ref&amp;gt; &lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Lyme disease is a debilitating condition that begins with a characteristic bullseye rash known as an [http://en.wikipedia.org/wiki/Erythema_chronicum_migrans erythema migrans (EM)] as well as the development of lesions on other parts of the body, not just at the site of the tick&#039;s attachment to its host. Secondary stage symptoms include affecting the heart, joints, and both the central and peripheral nervous systems. &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; has two major outer surface lipoproteins that are involved in Lyme disease: OspA and OspB. OspA is used in adhering to the tick&#039;s gut by binding with the tick receptor (TROSPA) &lt;br /&gt;
&lt;br /&gt;
During feeding, OspA is downregulated in order to evade an immune response from the incoming host blood into the gut, releasing the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; from the gut wall and migrating into the tick&#039;s salivary glands, thereby allowing it to enter the host through the bite. This is evidenced by the fact that patients with Lyme disease have been found to not possess OspA antibodies in the early stages of the disease.&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt; OspA is the protein most related to acute Lyme neuroborreliosis (LNB), the neurological manifestations of Lyme disease.  &lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Once inside the host, the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; has a great number of mechanisms available to actively suppress the host&#039;s immune system response and neutralize its effector mechanisms, such as the expression of another outer surface protein, OspC, which prevents susceptibility to the host&#039;s [http://en.wikipedia.org/wiki/Innate_immune_system innate immunity] and [http://en.wikipedia.org/wiki/Complement_system complement systems]. Additionally, &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; is capable of suppressing many of its surface proteins to reduce its detectability, but can also utilize protective means by temporarily expressing them when needed.&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;OspA &amp;amp; Lyme Disease&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Acute Lyme Neuroborreliosis (LNB) is part of the second stage of Lyme disease in which the spirochete invades the peripheral and central nervous systems (CNS). Symptoms of LNB include: Bannwarth’s Syndrome, Lymphocytic Meningitis, and [http://www.rightdiagnosis.com/sym/cranial_neuritis.htm Cranial] and [http://www.ncbi.nlm.nih.gov/pubmedhealth/PMH0001619/ Peripheral Neuritis]. The presence of OspA in the cerebrospinal fluid (CSF) is responsible for this complex inflammatory response in the brain that leads to the neuroborreliosis.&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
[[Image:G2L03-OspA-mechanism.jpg|thumb|300px|Mechanism of the host inflammatory response to OspA]]&lt;br /&gt;
&lt;br /&gt;
There are six steps involved in the host&#039;s inflammatory response to OspA: &amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt;&amp;lt;br&amp;gt;&lt;br /&gt;
&amp;lt;ol&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;When the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; enter the host’s CNS they encounter several different types of immune cells such as [http://en.wikipedia.org/wiki/Monocyte monocytes], [http://en.wikipedia.org/wiki/Macrophages macrophages], and [http://en.wikipedia.org/wiki/Dendritic_cells dendritic cells]. While in the CSF, outer surface protein A (OspA) is upregulated and it’s increased expression promotes recognition by a specific receptor on a monocyte.&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;The OspA-bound monocyte then releases proinflammatory [http://en.wikipedia.org/wiki/Cytokine cytokines] (i.e. [http://en.wikipedia.org/wiki/Interferon interferon]), as well as [http://en.wikipedia.org/wiki/Chemokine chemokines], such as [http://en.wikipedia.org/wiki/CXCL13 CXCL13]. In patients with LNB, there is an observed increase in the levels of these cytokines and chemokines in their CSF. The production of chemokines leads to the recruitment of other immune cells to the site of infection.&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://en.wikipedia.org/wiki/B_lymphocyte B-lymphocytes] respond to the new concentration gradient of CXCL13 between the blood and CSF and migrate into the CSF.&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;B-lymphocytes undergo [http://en.wikipedia.org/wiki/Receptor-mediated_endocytosis receptor-mediated endocytosis], consuming the OspA antigens present in the CSF, thereby triggering its activation. The B-lymphocytes then are able to differentiate and mature into  [http://en.wikipedia.org/wiki/Plasma_cells plasma cells].&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;The plasma cells create large quantities of anti-OspA antibodies specific to this strain of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; and release them into the CSF.&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;The anti-OspA antibodies will then bind to the OspA on the spirochete’s membrane, thus killing the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt;.&amp;lt;/li&amp;gt;&lt;br /&gt;
&amp;lt;/ol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
This process is two-sided in the sense that the OspA aids in the pathogenesis of new symptoms (neuroborreliosis) through the chemokine’s actions, as well as initiating the signaling cascade to destroy itself.&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;OspA Vaccination&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Risk of developing Lyme disease can be mitigated by staying clear of areas with populations of ticks, wearing proper attire to minimize easily bitten areas of the body, and using insect repellents containing [http://en.wikipedia.org/wiki/DEET DEET] (N,N-diethy-m-toluamide). However, another effective means for prevention could be possible by using an outer surface protein from &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; in the creation of a vaccine.&amp;lt;ref name=&amp;quot;nigrovic&amp;quot;&amp;gt;PMID: 16893489&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
The membrane composition of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; is abundant in both OspA and OspB, and the two proteins share a 53% similarity in their primary sequences. Both OspA and OspB are expressed in the tick&#039;s gut and downregulated during feeding and aid in its survivability; however, OspA is overall less varied and reactive than OspB, which has greater variability.&amp;lt;ref name=&amp;quot;becker&amp;quot;&amp;gt;PMID: 15713683&amp;lt;/ref&amp;gt; The relatively conserved sequence of OspA thus lends itself better to study and application toward the development of a vaccine for a broader range of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; strains in the treatment of Lyme disease than that of OspB. The first vaccine used a purified recombinant form of OspA and functioned in blocking transmission of the spirochetes expressing OspA from tick to host during feeding, killing them while still attached to the tick&#039;s gut.&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;battisti&amp;quot;&amp;gt;PMID: 18779341&amp;lt;/ref&amp;gt; The vaccine, Lymerix, had shown 76% and 92% effectiveness in separate clinical trials in which patients were treated for two years following a three-dose schedule. However, the vaccination was suspended from use in 2002 when opponents claimed the [http://en.wikipedia.org/wiki/Immunoglobulin_G IgG antibodies] for OspA were associated with the onset of severe chronic arthritis, as well as other side effects affecting immunity.&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;plotkin&amp;quot;&amp;gt;PMID: 21217175&amp;lt;/ref&amp;gt;  This fact, in conjunction with the desire for a more widespread vaccine treating multiple strains of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt;, has spurred research towards a new vaccine.&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;Structure load=&amp;quot;1fj1&amp;quot; size=&amp;quot;350&amp;quot; frame=&amp;quot;true&amp;quot; align=&amp;quot;right&amp;quot; name=&amp;quot;complex&amp;quot; caption=&amp;quot;Outer surface protein A (OspA) in complex with the LA-2 Fab antibody ([[1fj1|1FJ1]]).&amp;quot; scene=&amp;quot;Studio:G2SecL03/Ospafab-orig/1&amp;quot;&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
To address this problem of international protection it would be helpful to create a chimera, mixing the OspA of different species. In order to do this the epitope of OspA should be studied. &amp;lt;scene name=&#039;Studio:G2SecL03/Ospafab-fab/1&#039; target=&amp;quot;complex&amp;quot;&amp;gt;LA-2&amp;lt;/scene&amp;gt; is a murine monoclonal antibody that binds strongly &amp;lt;&amp;lt;SHOW INTERACTION HIGHLIGHTED (ZOOMED IN) ON 1FJ1&amp;gt;&amp;gt; to &amp;lt;scene name=&#039;Studio:G2SecL03/Ospafab-ospa/1&#039; target=&amp;quot;complex&amp;quot;&amp;gt;OspA&amp;lt;/scene&amp;gt;, and how effective a vaccine is correlated with LA-2 binding. 5&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;Structure of OspA&amp;lt;/h2&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;Structure load=&amp;quot;1fj1&amp;quot; size=&amp;quot;350&amp;quot; frame=&amp;quot;true&amp;quot; align=&amp;quot;right&amp;quot; name=&amp;quot;OspA-manip&amp;quot; caption=&amp;quot;Outer surface protein A (OspA) ([[1fj1|1FJ1]], chain F)&amp;quot; scene=&amp;quot;Studio:G2SecL03/Ospa_3loopscartoon/3&amp;quot;/&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
OspA is made up of 273 residues over 21 anti-parallel β-sheets and a single α-helix. It&#039;s folded conformation is divided into three main sections: a N-terminus &amp;quot;sandwich,&amp;quot; a central region comprising of several β-sheets and a C-terminus &amp;quot;barrel&amp;quot; domain.&amp;lt;ref name=&amp;quot;ding&amp;quot;&amp;gt;PMID: 11183781&amp;lt;/ref&amp;gt; The folded regions at its ends are connected by a single β-sheet layer in the middle, giving the protein the unique shape of a dumbell.&amp;lt;ref name=&amp;quot;makabe&amp;quot;&amp;gt;PMID: 16823038&amp;lt;/ref&amp;gt; &lt;br /&gt;
&lt;br /&gt;
There are &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops/4&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;three loops&amp;lt;/scene&amp;gt; at the C-terminus of OspA that are important in binding with the LA-2 Fab antibody, whose interactions provide great insight into vaccine research and effectiveness. Within these loops, there are &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-nor/3&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;three residues&amp;lt;/scene&amp;gt; &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-r/2&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;(show residue R-groups)&amp;lt;/scene&amp;gt; where there are distinct variations between the different strains of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; and serve as potential targets for the creation of a broader vaccine.&amp;lt;ref name=&amp;quot;ding&amp;quot;&amp;gt;PMID: 11183781&amp;lt;/ref&amp;gt; &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops3res/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;(display both the three loops and three residues together)&amp;lt;/scene&amp;gt; &lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-loop1/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Loop 1&amp;lt;/scene&amp;gt;, (residues 203-220), is important in showing variation amongst the different strains of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; as well as being optimally conformed for binding without steric hindrance. &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-loop2/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Loop 2&amp;lt;/scene&amp;gt; (residues 224-233) and &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-loop3/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Loop 3&amp;lt;/scene&amp;gt; (residues 246-257) are more strongly conserved than Loop 1 but also help to show some variation amongst strains. The LA-2 Fab antibody readily recognizes OspA from &amp;lt;i&amp;gt;B. burgdorferi&amp;lt;/i&amp;gt;, but does not recognize that from &amp;lt;i&amp;gt;B. afzelii&amp;lt;/i&amp;gt; or &amp;lt;i&amp;gt;B. garinii&amp;lt;/i&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
Between Bb. and Ba. genetic sequences are generally invariant, but two residues change between the species, ALA 208 &amp;lt;&amp;lt;ALA 208&amp;gt;&amp;gt; in Bb. is GLN in Ba., and ASN 251 &amp;lt;&amp;lt;ASN 251&amp;gt;&amp;gt; in Bb. is ALA in Ba.. Bg. has more variation and in addition to the previous two differences, has at least one more difference, where ALA 215 &amp;lt;&amp;lt;ALA 215&amp;gt;&amp;gt; in Bb. is LYS, Bg. sometimes also has a deletion at Bb.’s ALA 208. LA-2 and OspA of Bb. form a tight interface when binding, and the longer GLN sidechain found in Ba. and Bg. is more difficult to accommodate, causing less binding. A chimera that was weakly recognized by LA-2 was made with parts of loop 1 from Bb., and loops 2 and 3 from Bg. 5 Recently, a different kind of chimera has been made which combined the proximal region of Bb. and distal region of Ba., and was able to successfully protect mice from both species. 8&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h3&amp;gt;Reference List of Available Scenes for OspA&amp;lt;/h3&amp;gt;&lt;br /&gt;
&amp;lt;ul&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa_3loopscartoon/3&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Reset model&amp;lt;/scene&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops/4&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Three loops&amp;lt;/scene&amp;gt; in C-terminus (close up)&lt;br /&gt;
         &amp;lt;ul&amp;gt;&lt;br /&gt;
           &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-loop1/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Loop 1&amp;lt;/scene&amp;gt; (residues 203-220)&amp;lt;/li&amp;gt;&lt;br /&gt;
           &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-loop2/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Loop 2&amp;lt;/scene&amp;gt; (residues 224-233)&amp;lt;/li&amp;gt;&lt;br /&gt;
           &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-loop3/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Loop 3&amp;lt;/scene&amp;gt; (residues 246-257)&amp;lt;/li&amp;gt;&lt;br /&gt;
         &amp;lt;/ul&amp;gt;&lt;br /&gt;
     &amp;lt;/li&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-nor/3&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Three residues&amp;lt;/scene&amp;gt; in C-terminus (Ala208, Ala215 and Asn251 in &amp;lt;i&amp;gt;B. burgdorferi&amp;lt;/i&amp;gt;; also hides R-groups)&lt;br /&gt;
         &amp;lt;ul&amp;gt;&lt;br /&gt;
           &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-r/2&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Display R-groups&amp;lt;/scene&amp;gt; of Ala208, Ala215 and Asn251&amp;lt;/li&amp;gt;&lt;br /&gt;
         &amp;lt;/ul&amp;gt;&lt;br /&gt;
     &amp;lt;/li&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops3res/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Three loops and all three residues (with R-groups included)&amp;lt;/scene&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
&amp;lt;/ul&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;References&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;references /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;External Links&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;ul&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://www.who.int/ith/diseases/lyme/en/index.html World Health Organization: Lyme Disease]&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://www.ncbi.nlm.nih.gov/pubmedhealth/PMH0002296/ PubMed Health: Lyme Disease]&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://www.aldf.com/ American Lyme Disease Foundation]&lt;br /&gt;
&amp;lt;/ul&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;Proteopedia Page Contributors and Editors&amp;lt;/h2&amp;gt;&lt;br /&gt;
[http://proteopedia.org/wiki/index.php/User:Kimberly_Slade Kimberly Slade], [http://proteopedia.org/wiki/index.php/User:Cara_Lin Cara Lin], [http://proteopedia.org/wiki/index.php/User:Andrea_Mullen Andrea Mullen], [http://proteopedia.org/wiki/index.php/User:Jenny_Kim_Kim Jenny Kim Kim]&lt;br /&gt;
&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&lt;/div&gt;</summary>
		<author><name>Jenny Kim Kim</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=User:Marvin_O%27Neal/OspA&amp;diff=1384535</id>
		<title>User:Marvin O&#039;Neal/OspA</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=User:Marvin_O%27Neal/OspA&amp;diff=1384535"/>
		<updated>2012-05-02T17:00:06Z</updated>

		<summary type="html">&lt;p&gt;Jenny Kim Kim: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;Structure load=&amp;quot;1fj1&amp;quot; size=&amp;quot;350&amp;quot; frame=&amp;quot;true&amp;quot; align=&amp;quot;right&amp;quot; name=&amp;quot;OspA-secondary&amp;quot; caption=&amp;quot;Outer surface protein A (OspA) ([[1fj1|1FJ1]], chain F) showing secondary structures.&amp;quot; scene=&amp;quot;Studio:G2SecL03/Ospa_default/5&amp;quot;/&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
&amp;lt;b&amp;gt;Outer Surface Protein A (OspA)&amp;lt;/b&amp;gt; is a major lipoprotein found on the surface of [http://en.wikipedia.org/wiki/Spirochaete spirochetes] from the genus [http://en.wikipedia.org/wiki/Borrelia &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt;] and is comprised of 21 anti-parallel β-sheets and a single α-helix. OspA&#039;s expression is regulated at different points in time, from being downregulated during the tick&#039;s feeding process on its host to being upregulated in the host&#039;s cerebrospinal fluid (CSF) to induce inflammatory response, resulting in acute Lyme [http://en.wikipedia.org/wiki/Neuroborreliosis neuroborreliosis]. OspA has also been used as a vector in working towards the development of a vaccine for [http://en.wikipedia.org/wiki/Lyme_disease Lyme disease].&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;Introduction&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Lyme disease is caused by the spirochete &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; and spread via hard-bodied ticks belonging to the family [http://en.wikipedia.org/wiki/Ixodidae &amp;lt;i&amp;gt;Ixodidae&amp;lt;/i&amp;gt;]. The &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; spirochetes are motile, helical organisms have several lipoproteins exposed on the surfaces of their membranes that invoke a response from host immune systems. The predominant group of these is classified as the outer surface proteins (Osps). Both the pathogenesis of Lyme disease as well as the host&#039;s immune response stem from the effects of the spirochete&#039;s presence and involvement in the system.&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
The major strain of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; in the United States is [http://en.wikipedia.org/wiki/Borrelia_burgdorferi &amp;lt;i&amp;gt;Borrelia burgdorferi&amp;lt;/i&amp;gt;] &amp;lt;i&amp;gt;sensu stricto (Bb.)&amp;lt;/i&amp;gt;, with 20-100 cases of Lyme disease being reported per 100,000 people. In Europe, Lyme disease cases are more prevalent, with 100-130 diagnoses per 100,000 people, but are caused by the spirochetes [http://en.wikipedia.org/wiki/Borrelia_afzelii &amp;lt;i&amp;gt;Borrelia afzelii (Ba.)&amp;lt;/i&amp;gt;] and [http://en.wikipedia.org/wiki/Borrelia_garinii &amp;lt;i&amp;gt;Borrelia garinii (Bg.)&amp;lt;/i&amp;gt;] in addition to &amp;lt;i&amp;gt;B. burgdorferi&amp;lt;/i&amp;gt;.&amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;ding&amp;quot;&amp;gt;PMID: 11183781&amp;lt;/ref&amp;gt; &lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Lyme disease is a debilitating condition that begins with a characteristic bullseye rash known as an [http://en.wikipedia.org/wiki/Erythema_chronicum_migrans erythema migrans (EM)] as well as the development of lesions on other parts of the body, not just at the site of the tick&#039;s attachment to its host. Secondary stage symptoms include affecting the heart, joints, and both the central and peripheral nervous systems. &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; has two major outer surface lipoproteins that are involved in Lyme disease: OspA and OspB. OspA is used in adhering to the tick&#039;s gut by binding with the tick receptor (TROSPA) &lt;br /&gt;
&lt;br /&gt;
During feeding, OspA is downregulated in order to evade an immune response from the incoming host blood into the gut, releasing the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; from the gut wall and migrating into the tick&#039;s salivary glands, thereby allowing it to enter the host through the bite. This is evidenced by the fact that patients with Lyme disease have been found to not possess OspA antibodies in the early stages of the disease.&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt; OspA is the protein most related to acute Lyme neuroborreliosis (LNB), the neurological manifestations of Lyme disease.  &lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Once inside the host, the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; has a great number of mechanisms available to actively suppress the host&#039;s immune system response and neutralize its effector mechanisms, such as the expression of another outer surface protein, OspC, which prevents susceptibility to the host&#039;s [http://en.wikipedia.org/wiki/Innate_immune_system innate immunity] and [http://en.wikipedia.org/wiki/Complement_system complement systems]. Additionally, &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; is capable of suppressing many of its surface proteins to reduce its detectability, but can also utilize protective means by temporarily expressing them when needed.&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;OspA &amp;amp; Lyme Disease&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Acute Lyme Neuroborreliosis (LNB) is part of the second stage of Lyme disease in which the spirochete invades the peripheral and central nervous systems (CNS). Symptoms of LNB include: Bannwarth’s Syndrome, Lymphocytic Meningitis, and [http://www.rightdiagnosis.com/sym/cranial_neuritis.htm Cranial] and [http://www.ncbi.nlm.nih.gov/pubmedhealth/PMH0001619/ Peripheral Neuritis]. The presence of OspA in the cerebrospinal fluid (CSF) is responsible for this complex inflammatory response in the brain that leads to the neuroborreliosis.&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
[[Image:G2L03-OspA-mechanism.jpg|thumb|300px|Mechanism of the host inflammatory response to OspA]]&lt;br /&gt;
&lt;br /&gt;
There are six steps involved in the host&#039;s inflammatory response to OspA: &amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt;&amp;lt;br&amp;gt;&lt;br /&gt;
&amp;lt;ol&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;When the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; enter the host’s CNS they encounter several different types of immune cells such as [http://en.wikipedia.org/wiki/Monocyte monocytes], [http://en.wikipedia.org/wiki/Macrophages macrophages], and [http://en.wikipedia.org/wiki/Dendritic_cells dendritic cells]. While in the CSF, outer surface protein A (OspA) is upregulated and it’s increased expression promotes recognition by a specific receptor on a monocyte.&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;The OspA-bound monocyte then releases proinflammatory [http://en.wikipedia.org/wiki/Cytokine cytokines] (i.e. [http://en.wikipedia.org/wiki/Interferon interferon]), as well as [http://en.wikipedia.org/wiki/Chemokine chemokines], such as [http://en.wikipedia.org/wiki/CXCL13 CXCL13]. In patients with LNB, there is an observed increase in the levels of these cytokines and chemokines in their CSF. The production of chemokines leads to the recruitment of other immune cells to the site of infection.&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://en.wikipedia.org/wiki/B_lymphocyte B-lymphocytes] respond to the new concentration gradient of CXCL13 between the blood and CSF and migrate into the CSF.&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;B-lymphocytes undergo [http://en.wikipedia.org/wiki/Receptor-mediated_endocytosis receptor-mediated endocytosis], consuming the OspA antigens present in the CSF, thereby triggering its activation. The B-lymphocytes then are able to differentiate and mature into  [http://en.wikipedia.org/wiki/Plasma_cells plasma cells].&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;The plasma cells create large quantities of anti-OspA antibodies specific to this strain of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; and release them into the CSF.&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;The anti-OspA antibodies will then bind to the OspA on the spirochete’s membrane, thus killing the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt;.&amp;lt;/li&amp;gt;&lt;br /&gt;
&amp;lt;/ol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
This process is two-sided in the sense that the OspA aids in the pathogenesis of new symptoms (neuroborreliosis) through the chemokine’s actions, as well as initiating the signaling cascade to destroy itself.&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;OspA Vaccination&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Risk of developing Lyme disease can be mitigated by staying clear of areas with populations of ticks, wearing proper attire to minimize easily bitten areas of the body, and using insect repellents containing [http://en.wikipedia.org/wiki/DEET DEET] (N,N-diethy-m-toluamide). However, another effective means for prevention could be possible by using an outer surface protein from &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; in the creation of a vaccine.&amp;lt;ref name=&amp;quot;nigrovic&amp;quot;&amp;gt;PMID: 16893489&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
The membrane composition of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; is abundant in both OspA and OspB, and the two proteins share a 53% similarity in their primary sequences. Both OspA and OspB are expressed in the tick&#039;s gut and downregulated during feeding and aid in its survivability; however, OspA is overall less varied and reactive than OspB, which has greater variability.&amp;lt;ref name=&amp;quot;becker&amp;quot;&amp;gt;PMID: 15713683&amp;lt;/ref&amp;gt; The relatively conserved sequence of OspA thus lends itself better to study and application toward the development of a vaccine for a broader range of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; strains in the treatment of Lyme disease than that of OspB. The first vaccine used a purified recombinant form of OspA and functioned in blocking transmission of the spirochetes expressing OspA from tick to host during feeding, killing them while still attached to the tick&#039;s gut.&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;battisti&amp;quot;&amp;gt;PMID: 18779341&amp;lt;/ref&amp;gt; The vaccine, Lymerix, had shown 76% and 92% effectiveness in separate clinical trials in which patients were treated for two years following a three-dose schedule. However, the vaccination was suspended from use in 2002 when opponents claimed the [http://en.wikipedia.org/wiki/Immunoglobulin_G IgG antibodies] for OspA were associated with the onset of severe chronic arthritis, as well as other side effects affecting immunity.&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;plotkin&amp;quot;&amp;gt;PMID: 21217175&amp;lt;/ref&amp;gt;  This fact, in conjunction with the desire for a more widespread vaccine treating multiple strains of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt;, has spurred research towards a new vaccine.&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;Structure load=&amp;quot;1fj1&amp;quot; size=&amp;quot;350&amp;quot; frame=&amp;quot;true&amp;quot; align=&amp;quot;right&amp;quot; name=&amp;quot;complex&amp;quot; caption=&amp;quot;Outer surface protein A (OspA) in complex with the LA-2 Fab antibody ([[1fj1|1FJ1]]).&amp;quot;&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
To address this problem of international protection it would be helpful to create a chimera, mixing the OspA of different species. In order to do this the epitope of OspA should be studied. &amp;lt;scene name=&#039;Studio:G2SecL03/Ospafab-fab/1&#039; target=&amp;quot;complex&amp;quot;&amp;gt;LA-2&amp;lt;/scene&amp;gt; is a murine monoclonal antibody that binds strongly &amp;lt;&amp;lt;SHOW INTERACTION HIGHLIGHTED (ZOOMED IN) ON 1FJ1&amp;gt;&amp;gt; to &amp;lt;scene name=&#039;Studio:G2SecL03/Ospafab-ospa/1&#039; target=&amp;quot;complex&amp;quot;&amp;gt;OspA&amp;lt;/scene&amp;gt;, and how effective a vaccine is correlated with LA-2 binding. 5&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;Structure of OspA&amp;lt;/h2&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;Structure load=&amp;quot;1fj1&amp;quot; size=&amp;quot;350&amp;quot; frame=&amp;quot;true&amp;quot; align=&amp;quot;right&amp;quot; name=&amp;quot;OspA-manip&amp;quot; caption=&amp;quot;Outer surface protein A (OspA) ([[1fj1|1FJ1]], chain F)&amp;quot; scene=&amp;quot;Studio:G2SecL03/Ospa_3loopscartoon/3&amp;quot;/&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
OspA is made up of 273 residues over 21 anti-parallel β-sheets and a single α-helix. It&#039;s folded conformation is divided into three main sections: a N-terminus &amp;quot;sandwich,&amp;quot; a central region comprising of several β-sheets and a C-terminus &amp;quot;barrel&amp;quot; domain.&amp;lt;ref name=&amp;quot;ding&amp;quot;&amp;gt;PMID: 11183781&amp;lt;/ref&amp;gt; The folded regions at its ends are connected by a single β-sheet layer in the middle, giving the protein the unique shape of a dumbell.&amp;lt;ref name=&amp;quot;makabe&amp;quot;&amp;gt;PMID: 16823038&amp;lt;/ref&amp;gt; &lt;br /&gt;
&lt;br /&gt;
There are &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops/4&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;three loops&amp;lt;/scene&amp;gt; at the C-terminus of OspA that are important in binding with the LA-2 Fab antibody, whose interactions provide great insight into vaccine research and effectiveness. Within these loops, there are &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-nor/3&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;three residues&amp;lt;/scene&amp;gt; &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-r/2&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;(show residue R-groups)&amp;lt;/scene&amp;gt; where there are distinct variations between the different strains of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; and serve as potential targets for the creation of a broader vaccine.&amp;lt;ref name=&amp;quot;ding&amp;quot;&amp;gt;PMID: 11183781&amp;lt;/ref&amp;gt; &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops3res/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;(display both the three loops and three residues together)&amp;lt;/scene&amp;gt; &lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-loop1/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Loop 1&amp;lt;/scene&amp;gt;, (residues 203-220), is important in showing variation amongst the different strains of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; as well as being optimally conformed for binding without steric hindrance. &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-loop2/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Loop 2&amp;lt;/scene&amp;gt; (residues 224-233) and &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-loop3/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Loop 3&amp;lt;/scene&amp;gt; (residues 246-257) are more strongly conserved than Loop 1 but also help to show some variation amongst strains. The LA-2 Fab antibody readily recognizes OspA from &amp;lt;i&amp;gt;B. burgdorferi&amp;lt;/i&amp;gt;, but does not recognize that from &amp;lt;i&amp;gt;B. afzelii&amp;lt;/i&amp;gt; or &amp;lt;i&amp;gt;B. garinii&amp;lt;/i&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
Between Bb. and Ba. genetic sequences are generally invariant, but two residues change between the species, ALA 208 &amp;lt;&amp;lt;ALA 208&amp;gt;&amp;gt; in Bb. is GLN in Ba., and ASN 251 &amp;lt;&amp;lt;ASN 251&amp;gt;&amp;gt; in Bb. is ALA in Ba.. Bg. has more variation and in addition to the previous two differences, has at least one more difference, where ALA 215 &amp;lt;&amp;lt;ALA 215&amp;gt;&amp;gt; in Bb. is LYS, Bg. sometimes also has a deletion at Bb.’s ALA 208. LA-2 and OspA of Bb. form a tight interface when binding, and the longer GLN sidechain found in Ba. and Bg. is more difficult to accommodate, causing less binding. A chimera that was weakly recognized by LA-2 was made with parts of loop 1 from Bb., and loops 2 and 3 from Bg. 5 Recently, a different kind of chimera has been made which combined the proximal region of Bb. and distal region of Ba., and was able to successfully protect mice from both species. 8&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h3&amp;gt;Reference List of Available Scenes for OspA&amp;lt;/h3&amp;gt;&lt;br /&gt;
&amp;lt;ul&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa_3loopscartoon/3&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Reset model&amp;lt;/scene&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops/4&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Three loops&amp;lt;/scene&amp;gt; in C-terminus (close up)&lt;br /&gt;
         &amp;lt;ul&amp;gt;&lt;br /&gt;
           &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-loop1/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Loop 1&amp;lt;/scene&amp;gt; (residues 203-220)&amp;lt;/li&amp;gt;&lt;br /&gt;
           &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-loop2/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Loop 2&amp;lt;/scene&amp;gt; (residues 224-233)&amp;lt;/li&amp;gt;&lt;br /&gt;
           &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-loop3/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Loop 3&amp;lt;/scene&amp;gt; (residues 246-257)&amp;lt;/li&amp;gt;&lt;br /&gt;
         &amp;lt;/ul&amp;gt;&lt;br /&gt;
     &amp;lt;/li&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-nor/3&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Three residues&amp;lt;/scene&amp;gt; in C-terminus (Ala208, Ala215 and Asn251 in &amp;lt;i&amp;gt;B. burgdorferi&amp;lt;/i&amp;gt;; also hides R-groups)&lt;br /&gt;
         &amp;lt;ul&amp;gt;&lt;br /&gt;
           &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-r/2&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Display R-groups&amp;lt;/scene&amp;gt; of Ala208, Ala215 and Asn251&amp;lt;/li&amp;gt;&lt;br /&gt;
         &amp;lt;/ul&amp;gt;&lt;br /&gt;
     &amp;lt;/li&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops3res/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Three loops and all three residues (with R-groups included)&amp;lt;/scene&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
&amp;lt;/ul&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;References&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;references /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;External Links&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;ul&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://www.who.int/ith/diseases/lyme/en/index.html World Health Organization: Lyme Disease]&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://www.ncbi.nlm.nih.gov/pubmedhealth/PMH0002296/ PubMed Health: Lyme Disease]&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://www.aldf.com/ American Lyme Disease Foundation]&lt;br /&gt;
&amp;lt;/ul&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;Proteopedia Page Contributors and Editors&amp;lt;/h2&amp;gt;&lt;br /&gt;
[http://proteopedia.org/wiki/index.php/User:Kimberly_Slade Kimberly Slade], [http://proteopedia.org/wiki/index.php/User:Cara_Lin Cara Lin], [http://proteopedia.org/wiki/index.php/User:Andrea_Mullen Andrea Mullen], [http://proteopedia.org/wiki/index.php/User:Jenny_Kim_Kim Jenny Kim Kim]&lt;br /&gt;
&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&lt;/div&gt;</summary>
		<author><name>Jenny Kim Kim</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=User:Marvin_O%27Neal/OspA&amp;diff=1384486</id>
		<title>User:Marvin O&#039;Neal/OspA</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=User:Marvin_O%27Neal/OspA&amp;diff=1384486"/>
		<updated>2012-05-02T16:35:33Z</updated>

		<summary type="html">&lt;p&gt;Jenny Kim Kim: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;Structure load=&amp;quot;1fj1&amp;quot; size=&amp;quot;350&amp;quot; frame=&amp;quot;true&amp;quot; align=&amp;quot;right&amp;quot; name=&amp;quot;OspA-secondary&amp;quot; caption=&amp;quot;Outer surface protein A (OspA) ([[1fj1|1FJ1]], chain F) showing secondary structures.&amp;quot; scene=&amp;quot;Studio:G2SecL03/Ospa_default/5&amp;quot;/&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
&amp;lt;b&amp;gt;Outer Surface Protein A (OspA)&amp;lt;/b&amp;gt; is a major lipoprotein found on the surface of [http://en.wikipedia.org/wiki/Spirochaete spirochetes] from the genus [http://en.wikipedia.org/wiki/Borrelia &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt;] and is comprised of 21 anti-parallel β-sheets and a single α-helix. OspA&#039;s expression is regulated at different points in time, from being downregulated during the tick&#039;s feeding process on its host to being upregulated in the host&#039;s cerebrospinal fluid (CSF) to induce inflammatory response, resulting in acute Lyme [http://en.wikipedia.org/wiki/Neuroborreliosis neuroborreliosis]. OspA has also been used as a vector in working towards the development of a vaccine for [http://en.wikipedia.org/wiki/Lyme_disease Lyme disease].&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;Introduction&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Lyme disease is caused by the spirochete &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; and spread via hard-bodied ticks belonging to the family [http://en.wikipedia.org/wiki/Ixodidae &amp;lt;i&amp;gt;Ixodidae&amp;lt;/i&amp;gt;]. The &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; spirochetes are motile, helical organisms have several lipoproteins exposed on the surfaces of their membranes that invoke a response from host immune systems. The predominant group of these is classified as the outer surface proteins (Osps). Both the pathogenesis of Lyme disease as well as the host&#039;s immune response stem from the effects of the spirochete&#039;s presence and involvement in the system.&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
The major strain of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; in the United States is [http://en.wikipedia.org/wiki/Borrelia_burgdorferi &amp;lt;i&amp;gt;Borrelia burgdorferi&amp;lt;/i&amp;gt;] &amp;lt;i&amp;gt;sensu stricto (Bb.)&amp;lt;/i&amp;gt;, with 20-100 cases of Lyme disease being reported per 100,000 people. In Europe, Lyme disease cases are more prevalent, with 100-130 diagnoses per 100,000 people, but are caused by the spirochetes [http://en.wikipedia.org/wiki/Borrelia_afzelii &amp;lt;i&amp;gt;Borrelia afzelii (Ba.)&amp;lt;/i&amp;gt;] and [http://en.wikipedia.org/wiki/Borrelia_garinii &amp;lt;i&amp;gt;Borrelia garinii (Bg.)&amp;lt;/i&amp;gt;] in addition to &amp;lt;i&amp;gt;B. burgdorferi&amp;lt;/i&amp;gt;.&amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;ding&amp;quot;&amp;gt;PMID: 11183781&amp;lt;/ref&amp;gt; &lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Lyme disease is a debilitating condition that begins with a characteristic bullseye rash known as an [http://en.wikipedia.org/wiki/Erythema_chronicum_migrans erythema migrans (EM)] as well as the development of lesions on other parts of the body, not just at the site of the tick&#039;s attachment to its host. Secondary stage symptoms include affecting the heart, joints, and both the central and peripheral nervous systems. &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; has two major outer surface lipoproteins that are involved in Lyme disease: OspA and OspB. OspA is used in adhering to the tick&#039;s gut by binding with the tick receptor (TROSPA) &lt;br /&gt;
&lt;br /&gt;
During feeding, OspA is downregulated in order to evade an immune response from the incoming host blood into the gut, releasing the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; from the gut wall and migrating into the tick&#039;s salivary glands, thereby allowing it to enter the host through the bite. This is evidenced by the fact that patients with Lyme disease have been found to not possess OspA antibodies in the early stages of the disease.&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt; OspA is the protein most related to acute Lyme neuroborreliosis (LNB), the neurological manifestations of Lyme disease.  &lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Once inside the host, the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; has a great number of mechanisms available to actively suppress the host&#039;s immune system response and neutralize its effector mechanisms, such as the expression of another outer surface protein, OspC, which prevents susceptibility to the host&#039;s [http://en.wikipedia.org/wiki/Innate_immune_system innate immunity] and [http://en.wikipedia.org/wiki/Complement_system complement systems]. Additionally, &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; is capable of suppressing many of its surface proteins to reduce its detectability, but can also utilize protective means by temporarily expressing them when needed.&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;OspA &amp;amp; Lyme Disease&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Acute Lyme Neuroborreliosis (LNB) is part of the second stage of Lyme disease in which the spirochete invades the peripheral and central nervous systems (CNS). Symptoms of LNB include: Bannwarth’s Syndrome, Lymphocytic Meningitis, and [http://www.rightdiagnosis.com/sym/cranial_neuritis.htm Cranial] and [http://www.ncbi.nlm.nih.gov/pubmedhealth/PMH0001619/ Peripheral Neuritis]. The presence of OspA in the cerebrospinal fluid (CSF) is responsible for this complex inflammatory response in the brain that leads to the neuroborreliosis.&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
[[Image:G2L03-OspA-mechanism.jpg|thumb|300px|Mechanism of the host inflammatory response to OspA]]&lt;br /&gt;
&lt;br /&gt;
There are six steps involved in the host&#039;s inflammatory response to OspA: &amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt;&amp;lt;br&amp;gt;&lt;br /&gt;
&amp;lt;ol&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;When the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; enter the host’s CNS they encounter several different types of immune cells such as [http://en.wikipedia.org/wiki/Monocyte monocytes], [http://en.wikipedia.org/wiki/Macrophages macrophages], and [http://en.wikipedia.org/wiki/Dendritic_cells dendritic cells]. While in the CSF, outer surface protein A (OspA) is upregulated and it’s increased expression promotes recognition by a specific receptor on a monocyte.&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;The OspA-bound monocyte then releases proinflammatory [http://en.wikipedia.org/wiki/Cytokine cytokines] (i.e. [http://en.wikipedia.org/wiki/Interferon interferon]), as well as [http://en.wikipedia.org/wiki/Chemokine chemokines], such as [http://en.wikipedia.org/wiki/CXCL13 CXCL13]. In patients with LNB, there is an observed increase in the levels of these cytokines and chemokines in their CSF. The production of chemokines leads to the recruitment of other immune cells to the site of infection.&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://en.wikipedia.org/wiki/B_lymphocyte B-lymphocytes] respond to the new concentration gradient of CXCL13 between the blood and CSF and migrate into the CSF.&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;B-lymphocytes undergo [http://en.wikipedia.org/wiki/Receptor-mediated_endocytosis receptor-mediated endocytosis], consuming the OspA antigens present in the CSF, thereby triggering its activation. The B-lymphocytes then are able to differentiate and mature into  [http://en.wikipedia.org/wiki/Plasma_cells plasma cells].&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;The plasma cells create large quantities of anti-OspA antibodies specific to this strain of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; and release them into the CSF.&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;The anti-OspA antibodies will then bind to the OspA on the spirochete’s membrane, thus killing the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt;.&amp;lt;/li&amp;gt;&lt;br /&gt;
&amp;lt;/ol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
This process is two-sided in the sense that the OspA aids in the pathogenesis of new symptoms (neuroborreliosis) through the chemokine’s actions, as well as initiating the signaling cascade to destroy itself.&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;OspA Vaccination&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Risk of developing Lyme disease can be mitigated by staying clear of areas with populations of ticks, wearing proper attire to minimize easily bitten areas of the body, and using insect repellents containing [http://en.wikipedia.org/wiki/DEET DEET] (N,N-diethy-m-toluamide). However, another effective means for prevention could be possible by using an outer surface protein from &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; in the creation of a vaccine.&amp;lt;ref name=&amp;quot;nigrovic&amp;quot;&amp;gt;PMID: 16893489&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
The membrane composition of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; is abundant in both OspA and OspB, and the two proteins share a 53% similarity in their primary sequences. Both OspA and OspB are expressed in the tick&#039;s gut and downregulated during feeding and aid in its survivability; however, OspA is overall less varied and reactive than OspB, which has greater variability.&amp;lt;ref name=&amp;quot;becker&amp;quot;&amp;gt;PMID: 15713683&amp;lt;/ref&amp;gt; The relatively conserved sequence of OspA thus lends itself better to study and application toward the development of a vaccine for a broader range of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; strains in the treatment of Lyme disease than that of OspB. The first vaccine used a purified recombinant form of OspA and functioned in blocking transmission of the spirochetes expressing OspA from tick to host during feeding, killing them while still attached to the tick&#039;s gut.&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;battisti&amp;quot;&amp;gt;PMID: 18779341&amp;lt;/ref&amp;gt; The vaccine, Lymerix, had shown 76% and 92% effectiveness in separate clinical trials in which patients were treated for two years following a three-dose schedule. However, the vaccination was suspended from use in 2002 when opponents claimed the [http://en.wikipedia.org/wiki/Immunoglobulin_G IgG antibodies] for OspA were associated with the onset of severe chronic arthritis, as well as other side effects affecting immunity.&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;plotkin&amp;quot;&amp;gt;PMID: 21217175&amp;lt;/ref&amp;gt;  This fact, in conjunction with the desire for a more widespread vaccine treating multiple strains of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt;, has spurred research towards a new vaccine.&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
To address this problem of international protection it would be helpful to create a chimera, mixing the OspA of different species. In order to do this the epitope of OspA should be studied. LA-2 &amp;lt;&amp;lt;SHOW FAB HIGHLIGHTED ON 1FJ1&amp;gt;&amp;gt; is a murine monoclonal antibody that binds strongly &amp;lt;&amp;lt;SHOW INTERACTION HIGHLIGHTED (ZOOMED IN) ON 1FJ1&amp;gt;&amp;gt; to OspA &amp;lt;&amp;lt;SHOW OSPA HIGHLIGHTED ON 1FJ1&amp;gt;&amp;gt;, and how effective a vaccine is correlated with LA-2 binding. 5&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;Structure of OspA&amp;lt;/h2&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;Structure load=&amp;quot;1fj1&amp;quot; size=&amp;quot;350&amp;quot; frame=&amp;quot;true&amp;quot; align=&amp;quot;right&amp;quot; name=&amp;quot;OspA-manip&amp;quot; caption=&amp;quot;Outer surface protein A (OspA) ([[1fj1|1FJ1]], chain F)&amp;quot; scene=&amp;quot;Studio:G2SecL03/Ospa_3loopscartoon/3&amp;quot;/&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
OspA is made up of 273 residues over 21 anti-parallel β-sheets and a single α-helix. It&#039;s folded conformation is divided into three main sections: a N-terminus &amp;quot;sandwich,&amp;quot; a central region comprising of several β-sheets and a C-terminus &amp;quot;barrel&amp;quot; domain.&amp;lt;ref name=&amp;quot;ding&amp;quot;&amp;gt;PMID: 11183781&amp;lt;/ref&amp;gt; The folded regions at its ends are connected by a single β-sheet layer in the middle, giving the protein the unique shape of a dumbell.&amp;lt;ref name=&amp;quot;makabe&amp;quot;&amp;gt;PMID: 16823038&amp;lt;/ref&amp;gt; &lt;br /&gt;
&lt;br /&gt;
There are &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops/4&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;three loops&amp;lt;/scene&amp;gt; at the C-terminus of OspA that are important in binding with the LA-2 Fab antibody, whose interactions provide great insight into vaccine research and effectiveness. Within these loops, there are &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-nor/3&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;three residues&amp;lt;/scene&amp;gt; &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-r/2&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;(show residue R-groups)&amp;lt;/scene&amp;gt; where there are distinct variations between the different strains of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; and serve as potential targets for the creation of a broader vaccine.&amp;lt;ref name=&amp;quot;ding&amp;quot;&amp;gt;PMID: 11183781&amp;lt;/ref&amp;gt; &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops3res/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;(display both the three loops and three residues together)&amp;lt;/scene&amp;gt; &lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-loop1/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Loop 1&amp;lt;/scene&amp;gt;, (residues 203-220), is important in showing variation amongst the different strains of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; as well as being optimally conformed for binding without steric hindrance. &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-loop2/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Loop 2&amp;lt;/scene&amp;gt; (residues 224-233) and &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-loop3/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Loop 3&amp;lt;/scene&amp;gt; (residues 246-257) are more strongly conserved than Loop 1 but also help to show some variation amongst strains. The LA-2 Fab antibody readily recognizes OspA from &amp;lt;i&amp;gt;B. burgdorferi&amp;lt;/i&amp;gt;, but does not recognize that from &amp;lt;i&amp;gt;B. afzelii&amp;lt;/i&amp;gt; or &amp;lt;i&amp;gt;B. garinii&amp;lt;/i&amp;gt;. Between Bb. and Ba. genetic sequences are generally invariant, but two residues change between the species, ALA 208 &amp;lt;&amp;lt;ALA 208&amp;gt;&amp;gt; in Bb. is GLN in Ba., and ASN 251 &amp;lt;&amp;lt;ASN 251&amp;gt;&amp;gt; in Bb. is ALA in Ba.. Bg. has more variation and in addition to the previous two differences, has at least one more difference, where ALA 215 &amp;lt;&amp;lt;ALA 215&amp;gt;&amp;gt; in Bb. is LYS, Bg. sometimes also has a deletion at Bb.’s ALA 208. LA-2 and OspA of Bb. form a tight interface when binding, and the longer GLN sidechain found in Ba. and Bg. is more difficult to accommodate, causing less binding. A chimera that was weakly recognized by LA-2 was made with parts of loop 1 from Bb., and loops 2 and 3 from Bg. 5 Recently, a different kind of chimera has been made which combined the proximal region of Bb. and distal region of Ba., and was able to successfully protect mice from both species. 8&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h3&amp;gt;Reference List of Available Scenes for OspA&amp;lt;/h3&amp;gt;&lt;br /&gt;
&amp;lt;ul&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa_3loopscartoon/3&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Reset model&amp;lt;/scene&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops/4&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Three loops&amp;lt;/scene&amp;gt; in C-terminus (close up)&lt;br /&gt;
         &amp;lt;ul&amp;gt;&lt;br /&gt;
           &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-loop1/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Loop 1&amp;lt;/scene&amp;gt; (residues 203-220)&amp;lt;/li&amp;gt;&lt;br /&gt;
           &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-loop2/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Loop 2&amp;lt;/scene&amp;gt; (residues 224-233)&amp;lt;/li&amp;gt;&lt;br /&gt;
           &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-loop3/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Loop 3&amp;lt;/scene&amp;gt; (residues 246-257)&amp;lt;/li&amp;gt;&lt;br /&gt;
         &amp;lt;/ul&amp;gt;&lt;br /&gt;
     &amp;lt;/li&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-nor/3&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Three residues&amp;lt;/scene&amp;gt; in C-terminus (Ala208, Ala215 and Asn251 in &amp;lt;i&amp;gt;B. burgdorferi&amp;lt;/i&amp;gt;; also hides R-groups)&lt;br /&gt;
         &amp;lt;ul&amp;gt;&lt;br /&gt;
           &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-r/2&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Display R-groups&amp;lt;/scene&amp;gt; of Ala208, Ala215 and Asn251&amp;lt;/li&amp;gt;&lt;br /&gt;
         &amp;lt;/ul&amp;gt;&lt;br /&gt;
     &amp;lt;/li&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops3res/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Three loops and all three residues (with R-groups included)&amp;lt;/scene&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
&amp;lt;/ul&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;References&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;references /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;External Links&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;ul&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://www.who.int/ith/diseases/lyme/en/index.html World Health Organization: Lyme Disease]&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://www.ncbi.nlm.nih.gov/pubmedhealth/PMH0002296/ PubMed Health: Lyme Disease]&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://www.aldf.com/ American Lyme Disease Foundation]&lt;br /&gt;
&amp;lt;/ul&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;Proteopedia Page Contributors and Editors&amp;lt;/h2&amp;gt;&lt;br /&gt;
[http://proteopedia.org/wiki/index.php/User:Kimberly_Slade Kimberly Slade], [http://proteopedia.org/wiki/index.php/User:Cara_Lin Cara Lin], [http://proteopedia.org/wiki/index.php/User:Andrea_Mullen Andrea Mullen], [http://proteopedia.org/wiki/index.php/User:Jenny_Kim_Kim Jenny Kim Kim]&lt;br /&gt;
&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&lt;/div&gt;</summary>
		<author><name>Jenny Kim Kim</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=User:Marvin_O%27Neal/OspA&amp;diff=1384462</id>
		<title>User:Marvin O&#039;Neal/OspA</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=User:Marvin_O%27Neal/OspA&amp;diff=1384462"/>
		<updated>2012-05-02T16:15:22Z</updated>

		<summary type="html">&lt;p&gt;Jenny Kim Kim: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;Structure load=&amp;quot;1fj1&amp;quot; size=&amp;quot;350&amp;quot; frame=&amp;quot;true&amp;quot; align=&amp;quot;right&amp;quot; name=&amp;quot;OspA-secondary&amp;quot; caption=&amp;quot;Outer surface protein A (OspA) ([[1fj1|1FJ1]], chain F) showing secondary structures.&amp;quot; scene=&amp;quot;Studio:G2SecL03/Ospa_default/5&amp;quot;/&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
&amp;lt;b&amp;gt;Outer Surface Protein A (OspA)&amp;lt;/b&amp;gt; is a major lipoprotein found on the surface of [http://en.wikipedia.org/wiki/Spirochaete spirochetes] from the genus [http://en.wikipedia.org/wiki/Borrelia &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt;] and is comprised of 21 anti-parallel β-sheets and a single α-helix. OspA&#039;s expression is regulated at different points in time, from being downregulated during the tick&#039;s feeding process on its host to being upregulated in the host&#039;s cerebrospinal fluid (CSF) to induce inflammatory response, resulting in acute Lyme [http://en.wikipedia.org/wiki/Neuroborreliosis neuroborreliosis]. OspA has also been used as a vector in working towards the development of a vaccine for [http://en.wikipedia.org/wiki/Lyme_disease Lyme disease].&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;Introduction&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Lyme disease is caused by the spirochete &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; and spread via hard-bodied ticks belonging to the family [http://en.wikipedia.org/wiki/Ixodidae &amp;lt;i&amp;gt;Ixodidae&amp;lt;/i&amp;gt;]. The &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; spirochetes are motile, helical organisms have several lipoproteins exposed on the surfaces of their membranes that invoke a response from host immune systems. The predominant group of these is classified as the outer surface proteins (Osps). Both the pathogenesis of Lyme disease as well as the host&#039;s immune response stem from the effects of the spirochete&#039;s presence and involvement in the system.&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
The major strain of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; in the United States is [http://en.wikipedia.org/wiki/Borrelia_burgdorferi &amp;lt;i&amp;gt;Borrelia burgdorferi&amp;lt;/i&amp;gt;] &amp;lt;i&amp;gt;sensu stricto (Bb.)&amp;lt;/i&amp;gt;, with 20-100 cases of Lyme disease being reported per 100,000 people. In Europe, Lyme disease cases are more prevalent, with 100-130 diagnoses per 100,000 people, but are caused by the spirochetes [http://en.wikipedia.org/wiki/Borrelia_afzelii &amp;lt;i&amp;gt;Borrelia afzelii (Ba.)&amp;lt;/i&amp;gt;] and [http://en.wikipedia.org/wiki/Borrelia_garinii &amp;lt;i&amp;gt;Borrelia garinii (Bg.)&amp;lt;/i&amp;gt;] in addition to &amp;lt;i&amp;gt;B. burgdorferi&amp;lt;/i&amp;gt;.&amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;ding&amp;quot;&amp;gt;PMID: 11183781&amp;lt;/ref&amp;gt; &lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Lyme disease is a debilitating condition that begins with a characteristic bullseye rash known as an [http://en.wikipedia.org/wiki/Erythema_chronicum_migrans erythema migrans (EM)] as well as the development of lesions on other parts of the body, not just at the site of the tick&#039;s attachment to its host. Secondary stage symptoms include affecting the heart, joints, and both the central and peripheral nervous systems. &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; has two major outer surface lipoproteins that are involved in Lyme disease: OspA and OspB. OspA is used in adhering to the tick&#039;s gut by binding with the tick receptor (TROSPA) &lt;br /&gt;
&lt;br /&gt;
During feeding, OspA is downregulated in order to evade an immune response from the incoming host blood into the gut, releasing the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; from the gut wall and migrating into the tick&#039;s salivary glands, thereby allowing it to enter the host through the bite. This is evidenced by the fact that patients with Lyme disease have been found to not possess OspA antibodies in the early stages of the disease.&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt; OspA is the protein most related to acute Lyme neuroborreliosis (LNB), the neurological manifestations of Lyme disease.  &lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Once inside the host, the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; has a great number of mechanisms available to actively suppress the host&#039;s immune system response and neutralize its effector mechanisms, such as the expression of another outer surface protein, OspC, which prevents susceptibility to the host&#039;s [http://en.wikipedia.org/wiki/Innate_immune_system innate immunity] and [http://en.wikipedia.org/wiki/Complement_system complement systems]. Additionally, &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; is capable of suppressing many of its surface proteins to reduce its detectability, but can also utilize protective means by temporarily expressing them when needed.&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;OspA &amp;amp; Lyme Disease&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Acute Lyme Neuroborreliosis (LNB) is part of the second stage of Lyme disease in which the spirochete invades the peripheral and central nervous systems (CNS). Symptoms of LNB include: Bannwarth’s Syndrome, Lymphocytic Meningitis, and [http://www.rightdiagnosis.com/sym/cranial_neuritis.htm Cranial] and [http://www.ncbi.nlm.nih.gov/pubmedhealth/PMH0001619/ Peripheral Neuritis]. The presence of OspA in the cerebrospinal fluid (CSF) is responsible for this complex inflammatory response in the brain that leads to the neuroborreliosis.&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
[[Image:G2L03-OspA-mechanism.jpg|thumb|300px|Mechanism of the host inflammatory response to OspA]]&lt;br /&gt;
&lt;br /&gt;
There are six steps involved in the host&#039;s inflammatory response to OspA: &amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt;&amp;lt;br&amp;gt;&lt;br /&gt;
&amp;lt;ol&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;When the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; enter the host’s CNS they encounter several different types of immune cells such as [http://en.wikipedia.org/wiki/Monocyte monocytes], [http://en.wikipedia.org/wiki/Macrophages macrophages], and [http://en.wikipedia.org/wiki/Dendritic_cells dendritic cells]. While in the CSF, outer surface protein A (OspA) is upregulated and it’s increased expression promotes recognition by a specific receptor on a monocyte.&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;The OspA-bound monocyte then releases proinflammatory [http://en.wikipedia.org/wiki/Cytokine cytokines] (i.e. [http://en.wikipedia.org/wiki/Interferon interferon]), as well as [http://en.wikipedia.org/wiki/Chemokine chemokines], such as [http://en.wikipedia.org/wiki/CXCL13 CXCL13]. In patients with LNB, there is an observed increase in the levels of these cytokines and chemokines in their CSF. The production of chemokines leads to the recruitment of other immune cells to the site of infection.&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://en.wikipedia.org/wiki/B_lymphocyte B-lymphocytes] respond to the new concentration gradient of CXCL13 between the blood and CSF and migrate into the CSF.&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;B-lymphocytes undergo [http://en.wikipedia.org/wiki/Receptor-mediated_endocytosis receptor-mediated endocytosis], consuming the OspA antigens present in the CSF, thereby triggering its activation. The B-lymphocytes then are able to differentiate and mature into  [http://en.wikipedia.org/wiki/Plasma_cells plasma cells].&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;The plasma cells create large quantities of anti-OspA antibodies specific to this strain of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; and release them into the CSF.&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;The anti-OspA antibodies will then bind to the OspA on the spirochete’s membrane, thus killing the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt;.&amp;lt;/li&amp;gt;&lt;br /&gt;
&amp;lt;/ol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
This process is two-sided in the sense that the OspA aids in the pathogenesis of new symptoms (neuroborreliosis) through the chemokine’s actions, as well as initiating the signaling cascade to destroy itself.&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;OspA Vaccination&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Risk of developing Lyme disease can be mitigated by staying clear of areas with populations of ticks, wearing proper attire to minimize easily bitten areas of the body, and using insect repellents containing [http://en.wikipedia.org/wiki/DEET DEET] (N,N-diethy-m-toluamide). However, another effective means for prevention could be possible by using an outer surface protein from &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; in the creation of a vaccine.&amp;lt;ref name=&amp;quot;nigrovic&amp;quot;&amp;gt;PMID: 16893489&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
The membrane composition of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; is abundant in both OspA and OspB, and the two proteins share a 53% similarity in their primary sequences. Both OspA and OspB are expressed in the tick&#039;s gut and downregulated during feeding and aid in its survivability; however, OspA is overall less varied and reactive than OspB, which has greater variability.&amp;lt;ref name=&amp;quot;becker&amp;quot;&amp;gt;PMID: 15713683&amp;lt;/ref&amp;gt; The relatively conserved sequence of OspA thus lends itself better to study and application toward the development of a vaccine for a broader range of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; strains in the treatment of Lyme disease than that of OspB. The first vaccine used a purified recombinant form of OspA and functioned in blocking transmission of the spirochetes expressing OspA from tick to host during feeding, killing them while still attached to the tick&#039;s gut.&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;battisti&amp;quot;&amp;gt;PMID: 18779341&amp;lt;/ref&amp;gt; The vaccine, Lymerix, had shown 76% and 92% effectiveness in separate clinical trials in which patients were treated for two years following a three-dose schedule. However, the vaccination was suspended from use in 2002 when opponents claimed the [http://en.wikipedia.org/wiki/Immunoglobulin_G IgG antibodies] for OspA were associated with the onset of severe chronic arthritis, as well as other side effects affecting immunity.&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;plotkin&amp;quot;&amp;gt;PMID: 21217175&amp;lt;/ref&amp;gt;  This fact, in conjunction with the desire for a more widespread vaccine treating multiple strains of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt;, has spurred research towards a new vaccine.&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
To address this problem of international protection it would be helpful to create a chimera, mixing the OspA of different species. In order to do this the epitope of OspA should be studied. LA-2 &amp;lt;&amp;lt;SHOW FAB HIGHLIGHTED ON 1FJ1&amp;gt;&amp;gt; is a murine monoclonal antibody that binds strongly &amp;lt;&amp;lt;SHOW INTERACTION HIGHLIGHTED (ZOOMED IN) ON 1FJ1&amp;gt;&amp;gt; to OspA &amp;lt;&amp;lt;SHOW OSPA HIGHLIGHTED ON 1FJ1&amp;gt;&amp;gt;, and how effective a vaccine is correlated with LA-2 binding. 5&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;Structure of OspA&amp;lt;/h2&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;Structure load=&amp;quot;1fj1&amp;quot; size=&amp;quot;350&amp;quot; frame=&amp;quot;true&amp;quot; align=&amp;quot;right&amp;quot; name=&amp;quot;OspA-manip&amp;quot; caption=&amp;quot;Outer surface protein A (OspA) ([[1fj1|1FJ1]], chain F)&amp;quot; scene=&amp;quot;Studio:G2SecL03/Ospa_3loopscartoon/3&amp;quot;/&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
OspA is made up of 273 residues over 21 anti-parallel β-sheets and a single α-helix. It&#039;s folded conformation is divided into three main sections: a N-terminus &amp;quot;sandwich,&amp;quot; a central region comprising of several β-sheets and a C-terminus &amp;quot;barrel&amp;quot; domain.&amp;lt;ref name=&amp;quot;ding&amp;quot;&amp;gt;PMID: 11183781&amp;lt;/ref&amp;gt; The folded regions at its ends are connected by a single β-sheet layer in the middle, giving the protein the unique shape of a dumbell.&amp;lt;ref name=&amp;quot;makabe&amp;quot;&amp;gt;PMID: 16823038&amp;lt;/ref&amp;gt; &lt;br /&gt;
&lt;br /&gt;
There are &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops/4&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;three loops&amp;lt;/scene&amp;gt; at the C-terminus of OspA that are important in binding with the LA-2 Fab antibody, whose interactions provide great insight into vaccine research and effectiveness. Within these loops, there are &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-nor/3&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;three residues&amp;lt;/scene&amp;gt; &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-r/2&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;(show residue R-groups)&amp;lt;/scene&amp;gt; where there are distinct variations between the different strains of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; and serve as potential targets for the creation of a broader vaccine.&amp;lt;ref name=&amp;quot;ding&amp;quot;&amp;gt;PMID: 11183781&amp;lt;/ref&amp;gt; &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops3res/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;(display both the three loops and three residues together)&amp;lt;/scene&amp;gt; &lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Loop 1 &amp;lt;&amp;lt;LOOP 1&amp;gt;&amp;gt;, (residues 203-220), is important in showing variation amongst the different strains of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; as well as being optimally conformed for binding without steric hindrance. Loop 2 &amp;lt;&amp;lt;LOOP 2&amp;gt;&amp;gt; (residues 224-233) and Loop 3 &amp;lt;&amp;lt;LOOP 3&amp;gt;&amp;gt; (residues 246-257) are more strongly conserved than Loop 1 but also help to show some variation amongst strains. The LA-2 Fab antibody readily recognizes OspA from &amp;lt;i&amp;gt;B. burgdorferi&amp;lt;/i&amp;gt;, but does not recognize that from &amp;lt;i&amp;gt;B. afzelii&amp;lt;/i&amp;gt; or &amp;lt;i&amp;gt;B. garinii&amp;lt;/i&amp;gt;. Between Bb. and Ba. genetic sequences are generally invariant, but two residues change between the species, ALA 208 &amp;lt;&amp;lt;ALA 208&amp;gt;&amp;gt; in Bb. is GLN in Ba., and ASN 251 &amp;lt;&amp;lt;ASN 251&amp;gt;&amp;gt; in Bb. is ALA in Ba.. Bg. has more variation and in addition to the previous two differences, has at least one more difference, where ALA 215 &amp;lt;&amp;lt;ALA 215&amp;gt;&amp;gt; in Bb. is LYS, Bg. sometimes also has a deletion at Bb.’s ALA 208. LA-2 and OspA of Bb. form a tight interface when binding, and the longer GLN sidechain found in Ba. and Bg. is more difficult to accommodate, causing less binding. A chimera that was weakly recognized by LA-2 was made with parts of loop 1 from Bb., and loops 2 and 3 from Bg. 5 Recently, a different kind of chimera has been made which combined the proximal region of Bb. and distal region of Ba., and was able to successfully protect mice from both species. 8&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h3&amp;gt;Reference List of Available Scenes for OspA&amp;lt;/h3&amp;gt;&lt;br /&gt;
&amp;lt;ul&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa_3loopscartoon/3&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Reset model&amp;lt;/scene&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops/4&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Three loops&amp;lt;/scene&amp;gt; in C-terminus (close up)&amp;lt;/li&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-nor/3&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Three residues&amp;lt;/scene&amp;gt; in C-terminus (Ala208, Ala215 and Asn251 in &amp;lt;i&amp;gt;B. burgdorferi&amp;lt;/i&amp;gt;; also hides R-groups)&lt;br /&gt;
         &amp;lt;ul&amp;gt;&lt;br /&gt;
           &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-r/2&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Display R-groups&amp;lt;/scene&amp;gt; of Ala208, Ala215 and Asn251&amp;lt;/li&amp;gt;&lt;br /&gt;
         &amp;lt;/ul&amp;gt;&lt;br /&gt;
     &amp;lt;/li&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops3res/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Three loops and all three residues (with R-groups included)&amp;lt;/scene&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
&amp;lt;/ul&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;References&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;references /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;External Links&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;ul&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://www.who.int/ith/diseases/lyme/en/index.html World Health Organization: Lyme Disease]&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://www.ncbi.nlm.nih.gov/pubmedhealth/PMH0002296/ PubMed Health: Lyme Disease]&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://www.aldf.com/ American Lyme Disease Foundation]&lt;br /&gt;
&amp;lt;/ul&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;Proteopedia Page Contributors and Editors&amp;lt;/h2&amp;gt;&lt;br /&gt;
[http://proteopedia.org/wiki/index.php/User:Kimberly_Slade Kimberly Slade], [http://proteopedia.org/wiki/index.php/User:Cara_Lin Cara Lin], [http://proteopedia.org/wiki/index.php/User:Andrea_Mullen Andrea Mullen], [http://proteopedia.org/wiki/index.php/User:Jenny_Kim_Kim Jenny Kim Kim]&lt;br /&gt;
&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&lt;/div&gt;</summary>
		<author><name>Jenny Kim Kim</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=User:Marvin_O%27Neal/OspA&amp;diff=1384337</id>
		<title>User:Marvin O&#039;Neal/OspA</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=User:Marvin_O%27Neal/OspA&amp;diff=1384337"/>
		<updated>2012-05-02T14:00:52Z</updated>

		<summary type="html">&lt;p&gt;Jenny Kim Kim: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;Structure load=&amp;quot;1fj1&amp;quot; size=&amp;quot;350&amp;quot; frame=&amp;quot;true&amp;quot; align=&amp;quot;right&amp;quot; name=&amp;quot;OspA-secondary&amp;quot; caption=&amp;quot;Outer surface protein A (OspA) ([[1fj1|1FJ1]], chain F) showing secondary structures.&amp;quot; scene=&amp;quot;Studio:G2SecL03/Ospa_default/5&amp;quot;/&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
&amp;lt;b&amp;gt;Outer Surface Protein A (OspA)&amp;lt;/b&amp;gt; &amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;is a major lipoprotein found on the surface of [http://en.wikipedia.org/wiki/Spirochaete spirochetes] from the genus [http://en.wikipedia.org/wiki/Borrelia &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt;] and is comprised of 21 anti-parallel β-sheets and a single α-helix. OspA&#039;s expression is regulated at different points in time, from being downregulated during the tick&#039;s feeding process on its host to being upregulated in the host&#039;s cerebrospinal fluid (CSF) to induce inflammatory response, resulting in acute Lyme [http://en.wikipedia.org/wiki/Neuroborreliosis neuroborreliosis]. OspA has also been used as a vector in working towards the development of a vaccine for [http://en.wikipedia.org/wiki/Lyme_disease Lyme disease].&amp;lt;/span&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;b&amp;gt;&amp;lt;SPAN STYLE=&amp;quot;color:red&amp;quot;&amp;gt;NOTE: Red text indicates changes/additions I&#039;ve made and&amp;lt;/span&amp;gt; &amp;lt;SPAN STYLE=&amp;quot;color:black; background:yellow&amp;quot;&amp;gt;this style&amp;lt;/span&amp;gt; &amp;lt;SPAN STYLE=&amp;quot;color:red&amp;quot;&amp;gt;is pertinent thoughts/questions we should consider/address. All of this will be cleaned up for the final submitted page. ~Kim&amp;lt;/span&amp;gt;&amp;lt;/b&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;Introduction&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Lyme disease is caused by the spirochete &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; and spread via hard-bodied ticks belonging to the family [http://en.wikipedia.org/wiki/Ixodidae &amp;lt;i&amp;gt;Ixodidae&amp;lt;/i&amp;gt;]. The &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; spirochetes are motile, helical organisms &amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;have several lipoproteins exposed on the surfaces of their membranes that invoke a response from host immune systems. The predominant group of these is classified as the outer surface proteins (Osps). Both the pathogenesis of Lyme disease as well as the host&#039;s immune response stem from the effects of the spirochete&#039;s presence and involvement in the system.&amp;lt;/span&amp;gt;&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
The major strain of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; in the United States is [http://en.wikipedia.org/wiki/Borrelia_burgdorferi &amp;lt;i&amp;gt;Borrelia burgdorferi&amp;lt;/i&amp;gt;] &amp;lt;i&amp;gt;sensu stricto (Bb.)&amp;lt;/i&amp;gt;, with 20-100 cases of Lyme disease being reported per 100,000 people. In Europe, Lyme disease cases are more prevalent, with 100-130 diagnoses per 100,000 people, but are caused by the spirochetes [http://en.wikipedia.org/wiki/Borrelia_afzelii &amp;lt;i&amp;gt;Borrelia afzelii (Ba.)&amp;lt;/i&amp;gt;] and [http://en.wikipedia.org/wiki/Borrelia_garinii &amp;lt;i&amp;gt;Borrelia garinii (Bg.)&amp;lt;/i&amp;gt;] in addition to &amp;lt;i&amp;gt;B. burgdorferi&amp;lt;/i&amp;gt;.&amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;ding&amp;quot;&amp;gt;PMID: 11183781&amp;lt;/ref&amp;gt; &lt;br /&gt;
&lt;br /&gt;
     &amp;lt;SPAN STYLE=&amp;quot;background:yellow&amp;quot;&amp;gt;&amp;lt;b&amp;gt;Do we want to mention the number of Borrelia strains but the fact that there are only 4 which are infectious to humans? - need a reference though&amp;lt;/b&amp;gt;&amp;lt;/span&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Lyme disease is a debilitating condition that begins with a characteristic bullseye rash known as an [http://en.wikipedia.org/wiki/Erythema_chronicum_migrans erythema migrans (EM)] as well as &amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;the development of lesions on other parts of the body, not just at the site of the tick&#039;s attachment to its host&amp;lt;/span&amp;gt;. Secondary stage symptoms include affecting the heart, joints, and both the central and peripheral nervous systems. &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; has two major outer surface lipoproteins that are involved in Lyme disease: OspA and OspB. OspA is used in adhering to the tick&#039;s gut by binding with the tick receptor (TROSPA) &lt;br /&gt;
&lt;br /&gt;
     &amp;lt;SPAN STYLE=&amp;quot;background:yellow&amp;quot;&amp;gt;&amp;lt;b&amp;gt;Think a blurb about this would be useful- there isn&#039;t a wiki page for easy reference&amp;lt;/b&amp;gt;&amp;lt;/span&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;During feeding, OspA is downregulated in order to evade an immune response from the incoming host blood into the gut, releasing the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; from the gut wall and migrating into the tick&#039;s salivary glands, thereby allowing it to enter the host through the bite. This is evidenced by the fact that patients with Lyme disease have been found to not possess OspA antibodies in the early stages of the disease.&amp;lt;/span&amp;gt;&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt; OspA is the protein most related to acute Lyme neuroborreliosis (LNB), the neurological manifestations of Lyme disease.  &lt;br /&gt;
&lt;br /&gt;
     &amp;lt;SPAN STYLE=&amp;quot;background:yellow&amp;quot;&amp;gt;&amp;lt;b&amp;gt;We mention &amp;quot;two&amp;quot; proteins involved in Lyme Disease and just &#039;name&#039; OspB but we don&#039;t even have a sentence or two about it in this part?&amp;lt;/b&amp;gt;&amp;lt;/span&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;Once inside the host, the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; has a great number of mechanisms available to actively suppress the host&#039;s immune system response and neutralize its effector mechanisms, such as the expression of another outer surface protein, OspC, which prevents susceptibility to the host&#039;s [http://en.wikipedia.org/wiki/Innate_immune_system innate immunity] and [http://en.wikipedia.org/wiki/Complement_system complement systems]. Additionally, &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; is capable of suppressing many of its surface proteins to reduce its detectability, but can also utilize protective means by temporarily expressing them when needed.&amp;lt;/span&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;OspA &amp;amp; Lyme Disease&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Acute Lyme Neuroborreliosis (LNB) is part of the second stage of Lyme disease in which the spirochete invades the peripheral and central nervous systems (CNS). Symptoms of LNB include: Bannwarth’s Syndrome, Lymphocytic Meningitis, and [http://www.rightdiagnosis.com/sym/cranial_neuritis.htm Cranial] and [http://www.ncbi.nlm.nih.gov/pubmedhealth/PMH0001619/ Peripheral Neuritis]. &amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;The presence of OspA in the cerebrospinal fluid (CSF) is responsible for this complex inflammatory response in the brain that leads to the neuroborreliosis.&amp;lt;/span&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
[[Image:G2L03-OspA-mechanism.jpg|thumb|300px|Mechanism of the host inflammatory response to OspA]]&lt;br /&gt;
&lt;br /&gt;
&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;There are six steps involved in the host&#039;s inflammatory response to OspA:&amp;lt;/span&amp;gt; &amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt;&amp;lt;br&amp;gt;&lt;br /&gt;
&amp;lt;ol&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;When the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; enter the host’s CNS they encounter several different types of immune cells such as [http://en.wikipedia.org/wiki/Monocyte monocytes], [http://en.wikipedia.org/wiki/Macrophages macrophages], and [http://en.wikipedia.org/wiki/Dendritic_cells dendritic cells]. While in the CSF, outer surface protein A (OspA) is upregulated and it’s increased expression promotes recognition by a specific receptor on a monocyte.&amp;lt;/span&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;The OspA-bound monocyte then releases proinflammatory [http://en.wikipedia.org/wiki/Cytokine cytokines] (i.e. [http://en.wikipedia.org/wiki/Interferon interferon]), as well as [http://en.wikipedia.org/wiki/Chemokine chemokines], such as [http://en.wikipedia.org/wiki/CXCL13 CXCL13]. In patients with LNB, there is an observed increase in the levels of these cytokines and chemokines in their CSF. The production of chemokines leads to the recruitment of other immune cells to the site of infection.&amp;lt;/span&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;[http://en.wikipedia.org/wiki/B_lymphocyte B-lymphocytes] respond to the new concentration gradient of CXCL13 between the blood and CSF and migrate into the CSF.&amp;lt;/span&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;B-lymphocytes undergo [http://en.wikipedia.org/wiki/Receptor-mediated_endocytosis receptor-mediated endocytosis], consuming the OspA antigens present in the CSF, thereby triggering its activation. The B-lymphocytes then are able to differentiate and mature into  [http://en.wikipedia.org/wiki/Plasma_cells plasma cells].&amp;lt;/span&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;The plasma cells create large quantities of anti-OspA antibodies specific to this strain of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; and release them into the CSF.&amp;lt;/span&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;The anti-OspA antibodies will then bind to the OspA on the spirochete’s membrane, thus killing the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt;.&amp;lt;/span&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
&amp;lt;/ol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;This process is two-sided in the sense that the OspA aids in the pathogenesis of new symptoms (neuroborreliosis) through the chemokine’s actions, as well as initiating the signaling cascade to destroy itself.&amp;lt;/span&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;OspA Vaccination&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Risk of developing Lyme disease can be &amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;mitigated&amp;lt;/span&amp;gt; by staying clear of areas with populations of ticks, wearing proper attire &amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;to minimize easily bitten areas of the body&amp;lt;/span&amp;gt;, and using &amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;insect repellents containing&amp;lt;/span&amp;gt; [http://en.wikipedia.org/wiki/DEET DEET] (N,N-diethy-m-toluamide). However, &amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;another effective means for prevention could be possible&amp;lt;/span&amp;gt; by using an outer surface protein from &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; &amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;in the creation of&amp;lt;/span&amp;gt; a vaccine.&amp;lt;ref name=&amp;quot;nigrovic&amp;quot;&amp;gt;PMID: 16893489&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;The membrane composition of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; is abundant in both OspA and OspB, and the two proteins share a 53% similarity in their primary sequences. Both OspA and OspB are expressed in the tick&#039;s gut and downregulated during feeding and aid in its survivability; however, OspA is overall less varied and reactive than OspB, which has greater variability.&amp;lt;ref name=&amp;quot;becker&amp;quot;&amp;gt;PMID: 15713683&amp;lt;/ref&amp;gt; The relatively conserved sequence of OspA thus lends itself better to study and application toward the development of a vaccine for a broader range of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; strains in the treatment of Lyme disease than that of OspB. The first vaccine used a purified recombinant form of OspA and functioned in blocking transmission of the spirochetes expressing OspA from tick to host during feeding, killing them while still attached to the tick&#039;s gut.&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;battisti&amp;quot;&amp;gt;PMID: 18779341&amp;lt;/ref&amp;gt; The vaccine, Lymerix, had shown 76% and 92% effectiveness in separate clinical trials in which patients were treated for two years following a three-dose schedule. However, the vaccination was suspended from use in 2002 when opponents claimed the [http://en.wikipedia.org/wiki/Immunoglobulin_G IgG antibodies] for OspA were associated with the onset of severe chronic arthritis, as well as other side effects affecting immunity.&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;plotkin&amp;quot;&amp;gt;PMID: 21217175&amp;lt;/ref&amp;gt;  This fact, in conjunction with the desire for a more widespread vaccine treating multiple strains of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt;, has spurred research towards a new vaccine.&lt;br /&gt;
&amp;lt;/span&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/span&amp;gt;&lt;br /&gt;
To address this problem of international protection it would be helpful to create a chimera, mixing the OspA of different species. In order to do this the epitope of OspA should be studied. LA-2 &amp;lt;&amp;lt;SHOW FAB HIGHLIGHTED ON 1FJ1&amp;gt;&amp;gt; is a murine monoclonal antibody that binds strongly &amp;lt;&amp;lt;SHOW INTERACTION HIGHLIGHTED (ZOOMED IN) ON 1FJ1&amp;gt;&amp;gt; to OspA &amp;lt;&amp;lt;SHOW OSPA HIGHLIGHTED ON 1FJ1&amp;gt;&amp;gt;, and how effective a vaccine is correlated with LA-2 binding. 5&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;Structure of OspA&amp;lt;/h2&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;Structure load=&amp;quot;1fj1&amp;quot; size=&amp;quot;350&amp;quot; frame=&amp;quot;true&amp;quot; align=&amp;quot;right&amp;quot; name=&amp;quot;OspA-manip&amp;quot; caption=&amp;quot;Outer surface protein A (OspA) ([[1fj1|1FJ1]], chain F)&amp;quot; scene=&amp;quot;Studio:G2SecL03/Ospa_3loopscartoon/3&amp;quot;/&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
OspA is made up of 273 residues over 21 anti-parallel β-sheets and a single α-helix. It&#039;s folded conformation is divided into three main sections: a N-terminus &amp;quot;sandwich,&amp;quot; a central region comprising of several β-sheets and a C-terminus &amp;quot;barrel&amp;quot; domain.&amp;lt;ref name=&amp;quot;ding&amp;quot;&amp;gt;PMID: 11183781&amp;lt;/ref&amp;gt; The folded regions at its ends are connected by a single β-sheet layer in the middle, giving the protein the unique shape of a dumbell.&amp;lt;ref name=&amp;quot;makabe&amp;quot;&amp;gt;PMID: 16823038&amp;lt;/ref&amp;gt; &lt;br /&gt;
&lt;br /&gt;
There are &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops/4&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;three loops&amp;lt;/scene&amp;gt; at the C-terminus of OspA that are important in binding with the LA-2 Fab antibody, whose interactions provide great insight into vaccine research and effectiveness. Within these loops, there are &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-nor/3&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;three residues&amp;lt;/scene&amp;gt; &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-r/2&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;(show residue R-groups)&amp;lt;/scene&amp;gt; where there are distinct variations between the different strains of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; and serve as potential targets for the creation of a broader vaccine.&amp;lt;ref name=&amp;quot;ding&amp;quot;&amp;gt;PMID: 11183781&amp;lt;/ref&amp;gt; &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops3res/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;(display both the three loops and three residues together)&amp;lt;/scene&amp;gt; &lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Loop 1 &amp;lt;&amp;lt;LOOP 1&amp;gt;&amp;gt;, (residues 203-220), is important in showing variation amongst the different strains of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; as well as being optimally conformed for binding without steric hindrance. Loop 2 &amp;lt;&amp;lt;LOOP 2&amp;gt;&amp;gt; (residues 224-233) and Loop 3 &amp;lt;&amp;lt;LOOP 3&amp;gt;&amp;gt; (residues 246-257) are more strongly conserved than Loop 1 but also help to show some variation amongst strains. The LA-2 Fab antibody readily recognizes OspA from &amp;lt;i&amp;gt;B. burgdorferi&amp;lt;/i&amp;gt;, but does not recognize that from &amp;lt;i&amp;gt;B. afzelii&amp;lt;/i&amp;gt; or &amp;lt;i&amp;gt;B. garinii&amp;lt;/i&amp;gt;. Between Bb. and Ba. genetic sequences are generally invariant, but two residues change between the species, ALA 208 &amp;lt;&amp;lt;ALA 208&amp;gt;&amp;gt; in Bb. is GLN in Ba., and ASN 251 &amp;lt;&amp;lt;ASN 251&amp;gt;&amp;gt; in Bb. is ALA in Ba.. Bg. has more variation and in addition to the previous two differences, has at least one more difference, where ALA 215 &amp;lt;&amp;lt;ALA 215&amp;gt;&amp;gt; in Bb. is LYS, Bg. sometimes also has a deletion at Bb.’s ALA 208. LA-2 and OspA of Bb. form a tight interface when binding, and the longer GLN sidechain found in Ba. and Bg. is more difficult to accommodate, causing less binding. A chimera that was weakly recognized by LA-2 was made with parts of loop 1 from Bb., and loops 2 and 3 from Bg. 5 Recently, a different kind of chimera has been made which combined the proximal region of Bb. and distal region of Ba., and was able to successfully protect mice from both species. 8&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h3&amp;gt;Reference List of Available Scenes for OspA&amp;lt;/h3&amp;gt;&lt;br /&gt;
&amp;lt;ul&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa_3loopscartoon/3&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Reset model&amp;lt;/scene&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops/4&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Three loops&amp;lt;/scene&amp;gt; in C-terminus (close up)&amp;lt;/li&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-nor/3&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Three residues&amp;lt;/scene&amp;gt; in C-terminus (Ala208, Ala215 and Asn251 in &amp;lt;i&amp;gt;B. burgdorferi&amp;lt;/i&amp;gt;; also hides R-groups)&lt;br /&gt;
         &amp;lt;ul&amp;gt;&lt;br /&gt;
           &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-r/2&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Display R-groups&amp;lt;/scene&amp;gt; of Ala208, Ala215 and Asn251&amp;lt;/li&amp;gt;&lt;br /&gt;
         &amp;lt;/ul&amp;gt;&lt;br /&gt;
     &amp;lt;/li&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops3res/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Three loops and all three residues (with R-groups included)&amp;lt;/scene&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
&amp;lt;/ul&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;References&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;references /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;External Links&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;ul&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://www.who.int/ith/diseases/lyme/en/index.html World Health Organization: Lyme Disease]&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://www.ncbi.nlm.nih.gov/pubmedhealth/PMH0002296/ PubMed Health: Lyme Disease]&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://www.aldf.com/ American Lyme Disease Foundation]&lt;br /&gt;
&amp;lt;/ul&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;Proteopedia Page Contributors and Editors&amp;lt;/h2&amp;gt;&lt;br /&gt;
[http://proteopedia.org/wiki/index.php/User:Kimberly_Slade Kimberly Slade], [http://proteopedia.org/wiki/index.php/User:Cara_Lin Cara Lin], [http://proteopedia.org/wiki/index.php/User:Andrea_Mullen Andrea Mullen], [http://proteopedia.org/wiki/index.php/User:Jenny_Kim_Kim Jenny Kim Kim]&lt;br /&gt;
&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&lt;/div&gt;</summary>
		<author><name>Jenny Kim Kim</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=User:Marvin_O%27Neal/OspA&amp;diff=1384328</id>
		<title>User:Marvin O&#039;Neal/OspA</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=User:Marvin_O%27Neal/OspA&amp;diff=1384328"/>
		<updated>2012-05-02T13:36:34Z</updated>

		<summary type="html">&lt;p&gt;Jenny Kim Kim: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;Structure load=&amp;quot;1fj1&amp;quot; size=&amp;quot;350&amp;quot; frame=&amp;quot;true&amp;quot; align=&amp;quot;right&amp;quot; name=&amp;quot;OspA-secondary&amp;quot; caption=&amp;quot;Outer surface protein A (OspA) ([[1fj1|1FJ1]], chain F) showing secondary structures.&amp;quot; scene=&amp;quot;Studio:G2SecL03/Ospa_default/5&amp;quot;/&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
&amp;lt;b&amp;gt;Outer Surface Protein A (OspA)&amp;lt;/b&amp;gt; &amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;is a major lipoprotein found on the surface of [http://en.wikipedia.org/wiki/Spirochaete spirochetes] from the genus [http://en.wikipedia.org/wiki/Borrelia &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt;] and is comprised of 21 anti-parallel β-sheets and a single α-helix. OspA&#039;s expression is regulated at different points in time, from being downregulated during the tick&#039;s feeding process on its host to being upregulated in the host&#039;s cerebrospinal fluid (CSF) to induce inflammatory response, resulting in acute Lyme [http://en.wikipedia.org/wiki/Neuroborreliosis neuroborreliosis]. OspA has also been used as a vector in working towards the development of a vaccine for [http://en.wikipedia.org/wiki/Lyme_disease Lyme disease].&amp;lt;/span&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;b&amp;gt;&amp;lt;SPAN STYLE=&amp;quot;color:red&amp;quot;&amp;gt;NOTE: Red text indicates changes/additions I&#039;ve made and&amp;lt;/span&amp;gt; &amp;lt;SPAN STYLE=&amp;quot;color:black; background:yellow&amp;quot;&amp;gt;this style&amp;lt;/span&amp;gt; &amp;lt;SPAN STYLE=&amp;quot;color:red&amp;quot;&amp;gt;is pertinent thoughts/questions we should consider/address. All of this will be cleaned up for the final submitted page. ~Kim&amp;lt;/span&amp;gt;&amp;lt;/b&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;Introduction&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Lyme disease is caused by the spirochete &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; and spread via hard-bodied ticks belonging to the family [http://en.wikipedia.org/wiki/Ixodidae &amp;lt;i&amp;gt;Ixodidae&amp;lt;/i&amp;gt;]. The &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; spirochetes are motile, helical organisms &amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;have several lipoproteins exposed on the surfaces of their membranes that invoke a response from host immune systems. The predominant group of these is classified as the outer surface proteins (Osps). Both the pathogenesis of Lyme disease as well as the host&#039;s immune response stem from the effects of the spirochete&#039;s presence and involvement in the system.&amp;lt;/span&amp;gt;&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
The major strain of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; in the United States is [http://en.wikipedia.org/wiki/Borrelia_burgdorferi &amp;lt;i&amp;gt;Borrelia burgdorferi&amp;lt;/i&amp;gt;] &amp;lt;i&amp;gt;sensu stricto (Bb.)&amp;lt;/i&amp;gt;, with 20-100 cases of Lyme disease being reported per 100,000 people. In Europe, Lyme disease cases are more prevalent, with 100-130 diagnoses per 100,000 people, but are caused by the spirochetes [http://en.wikipedia.org/wiki/Borrelia_afzelii &amp;lt;i&amp;gt;Borrelia afzelii (Ba.)&amp;lt;/i&amp;gt;] and [http://en.wikipedia.org/wiki/Borrelia_garinii &amp;lt;i&amp;gt;Borrelia garinii (Bg.)&amp;lt;/i&amp;gt;] in addition to &amp;lt;i&amp;gt;B. burgdorferi&amp;lt;/i&amp;gt;.&amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;ding&amp;quot;&amp;gt;PMID: 11183781&amp;lt;/ref&amp;gt; &lt;br /&gt;
&lt;br /&gt;
     &amp;lt;SPAN STYLE=&amp;quot;background:yellow&amp;quot;&amp;gt;&amp;lt;b&amp;gt;Do we want to mention the number of Borrelia strains but the fact that there are only 4 which are infectious to humans? - need a reference though&amp;lt;/b&amp;gt;&amp;lt;/span&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Lyme disease is a debilitating condition that begins with a characteristic bullseye rash known as an [http://en.wikipedia.org/wiki/Erythema_chronicum_migrans erythema migrans (EM)] as well as &amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;the development of lesions on other parts of the body, not just at the site of the tick&#039;s attachment to its host&amp;lt;/span&amp;gt;. Secondary stage symptoms include affecting the heart, joints, and both the central and peripheral nervous systems. &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; has two major outer surface lipoproteins that are involved in Lyme disease: OspA and OspB. OspA is used in adhering to the tick&#039;s gut by binding with the tick receptor (TROSPA) &lt;br /&gt;
&lt;br /&gt;
     &amp;lt;SPAN STYLE=&amp;quot;background:yellow&amp;quot;&amp;gt;&amp;lt;b&amp;gt;Think a blurb about this would be useful- there isn&#039;t a wiki page for easy reference&amp;lt;/b&amp;gt;&amp;lt;/span&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;During feeding, OspA is downregulated in order to evade an immune response from the incoming host blood into the gut, releasing the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; from the gut wall and migrating into the tick&#039;s salivary glands, thereby allowing it to enter the host through the bite. This is evidenced by the fact that patients with Lyme disease have been found to not possess OspA antibodies in the early stages of the disease.&amp;lt;/span&amp;gt;&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt; OspA is the protein most related to acute Lyme neuroborreliosis (LNB), the neurological manifestations of Lyme disease.  &lt;br /&gt;
&lt;br /&gt;
     &amp;lt;SPAN STYLE=&amp;quot;background:yellow&amp;quot;&amp;gt;&amp;lt;b&amp;gt;We mention &amp;quot;two&amp;quot; proteins involved in Lyme Disease and just &#039;name&#039; OspB but we don&#039;t even have a sentence or two about it in this part?&amp;lt;/b&amp;gt;&amp;lt;/span&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;Once inside the host, the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; has a great number of mechanisms available to actively suppress the host&#039;s immune system response and neutralize its effector mechanisms, such as the expression of another outer surface protein, OspC, which prevents susceptibility to the host&#039;s [http://en.wikipedia.org/wiki/Innate_immune_system innate immunity] and [http://en.wikipedia.org/wiki/Complement_system complement systems]. Additionally, &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; is capable of suppressing many of its surface proteins to reduce its detectability, but can also utilize protective means by temporarily expressing them when needed.&amp;lt;/span&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;OspA &amp;amp; Lyme Disease&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Acute Lyme Neuroborreliosis (LNB) is part of the second stage of Lyme disease in which the spirochete invades the peripheral and central nervous systems (CNS). Symptoms of LNB include: Bannwarth’s Syndrome, Lymphocytic Meningitis, and [http://www.rightdiagnosis.com/sym/cranial_neuritis.htm Cranial] and [http://www.ncbi.nlm.nih.gov/pubmedhealth/PMH0001619/ Peripheral Neuritis]. &amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;The presence of OspA in the cerebrospinal fluid (CSF) is responsible for this complex inflammatory response in the brain that leads to the neuroborreliosis.&amp;lt;/span&amp;gt; The most frequent species of boreelia that is isolated from patients with Bannwarth&#039;s syndrome is &amp;lt;i&amp;gt;B.garini&amp;lt;/i&amp;gt;. In the United States meningitis is the major symptom of Lyme Neuroborreliosis, and Bannwarth&#039;s syndrome is rarely seen.&amp;lt;SPAN STYLE=&amp;quot;background:yellow&amp;quot;&amp;gt;&amp;lt;b&amp;gt;cite me with rupprecht!!&amp;lt;/b&amp;gt;&amp;lt;/span&amp;gt;&amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
[[Image:G2L03-OspA-mechanism.jpg|thumb|300px|Mechanism of the host inflammatory response to OspA]]&lt;br /&gt;
&lt;br /&gt;
&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;There are six steps involved in the host&#039;s inflammatory response to OspA:&amp;lt;/span&amp;gt; &amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt;&amp;lt;br&amp;gt;&lt;br /&gt;
&amp;lt;ol&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;When the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; enter the host’s CNS they encounter several different types of immune cells such as [http://en.wikipedia.org/wiki/Monocyte monocytes], [http://en.wikipedia.org/wiki/Macrophages macrophages], and [http://en.wikipedia.org/wiki/Dendritic_cells dendritic cells]. While in the CSF, outer surface protein A (OspA) is upregulated and it’s increased expression promotes recognition by a specific receptor on a monocyte.&amp;lt;/span&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;The OspA-bound monocyte then releases proinflammatory [http://en.wikipedia.org/wiki/Cytokine cytokines] (i.e. [http://en.wikipedia.org/wiki/Interferon interferon]), as well as [http://en.wikipedia.org/wiki/Chemokine chemokines], such as [http://en.wikipedia.org/wiki/CXCL13 CXCL13]. In patients with LNB, there is an observed increase in the levels of these cytokines and chemokines in their CSF. The production of chemokines leads to the recruitment of other immune cells to the site of infection.&amp;lt;/span&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;[http://en.wikipedia.org/wiki/B_lymphocyte B-lymphocytes] respond to the new concentration gradient of CXCL13 between the blood and CSF and migrate into the CSF.&amp;lt;/span&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;B-lymphocytes undergo [http://en.wikipedia.org/wiki/Receptor-mediated_endocytosis receptor-mediated endocytosis], consuming the OspA antigens present in the CSF, thereby triggering its activation. The B-lymphocytes then are able to differentiate and mature into  [http://en.wikipedia.org/wiki/Plasma_cells plasma cells].&amp;lt;/span&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;The plasma cells create large quantities of anti-OspA antibodies specific to this strain of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; and release them into the CSF.&amp;lt;/span&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;The anti-OspA antibodies will then bind to the OspA on the spirochete’s membrane, thus killing the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt;.&amp;lt;/span&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
&amp;lt;/ol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;This process is two-sided in the sense that the OspA aids in the pathogenesis of new symptoms (neuroborreliosis) through the chemokine’s actions, as well as initiating the signaling cascade to destroy itself.&amp;lt;/span&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h3&amp;gt;Other Speculations about OspA&#039;s role in Lyme Disease&amp;lt;/h3&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Borrelia have been shown to adhere to murine neural and glial cell lines using OspA. This adherence can be cytotoxic, due to OspA inducing apopotosis and astrogliosis.The borrelia spirochete is able to hide in certain areas of the body, specifically the extracellular matrix. This helps the spirochete survive by hiding from leukocytes circulating in the bloodstream. It is speculated that because OspA can also rapidly bind to plasminogen, and the plasminogen becomes activated plasmin that can degrade the extracellular matrix, borrelia could be using this to help invade the extracellular matrix. However there are also other possible explanations that do not involve OspA. Borrelia lead to local upregulation of the matrix metalloproteinase-9, which caues the digestion of the surrounding extracellular matrix.&amp;lt;SPAN STYLE=&amp;quot;background:yellow&amp;quot;&amp;gt;&amp;lt;b&amp;gt;cite me with rupprecht!!&amp;lt;/b&amp;gt;&amp;lt;/span&amp;gt;&amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;OspA Vaccination&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Risk of developing Lyme disease can be &amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;mitigated&amp;lt;/span&amp;gt; by staying clear of areas with populations of ticks, wearing proper attire &amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;to minimize easily bitten areas of the body&amp;lt;/span&amp;gt;, and using &amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;insect repellents containing&amp;lt;/span&amp;gt; [http://en.wikipedia.org/wiki/DEET DEET] (N,N-diethy-m-toluamide). However, &amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;another effective means for prevention could be possible&amp;lt;/span&amp;gt; by using an outer surface protein from &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; &amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;in the creation of&amp;lt;/span&amp;gt; a vaccine.&amp;lt;ref name=&amp;quot;nigrovic&amp;quot;&amp;gt;PMID: 16893489&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;The membrane composition of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; is abundant in both OspA and OspB, and the two proteins share a 53% similarity in their primary sequences. Both OspA and OspB are expressed in the tick&#039;s gut and downregulated during feeding and aid in its survivability; however, OspA is overall less varied and reactive than OspB, which has greater variability.&amp;lt;ref name=&amp;quot;becker&amp;quot;&amp;gt;PMID: 15713683&amp;lt;/ref&amp;gt; The relatively conserved sequence of OspA thus lends itself better to study and application toward the development of a vaccine for a broader range of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; strains in the treatment of Lyme disease than that of OspB. The first vaccine used a purified recombinant form of OspA and functioned in blocking transmission of the spirochetes expressing OspA from tick to host during feeding, killing them while still attached to the tick&#039;s gut.&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;battisti&amp;quot;&amp;gt;PMID: 18779341&amp;lt;/ref&amp;gt; The vaccine, Lymerix, had shown 76% and 92% effectiveness in separate clinical trials in which patients were treated for two years following a three-dose schedule. However, the vaccination was suspended from use in 2002 when opponents claimed the [http://en.wikipedia.org/wiki/Immunoglobulin_G IgG antibodies] for OspA were associated with the onset of severe chronic arthritis, as well as other side effects affecting immunity.&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;plotkin&amp;quot;&amp;gt;PMID: 21217175&amp;lt;/ref&amp;gt;  This fact, in conjunction with the desire for a more widespread vaccine treating multiple strains of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt;, has spurred research towards a new vaccine.&lt;br /&gt;
&amp;lt;/span&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/span&amp;gt;&lt;br /&gt;
To address this problem of international protection it would be helpful to create a chimera, mixing the OspA of different species. In order to do this the epitope of OspA should be studied. LA-2 &amp;lt;&amp;lt;SHOW FAB HIGHLIGHTED ON 1FJ1&amp;gt;&amp;gt; is a murine monoclonal antibody that binds strongly &amp;lt;&amp;lt;SHOW INTERACTION HIGHLIGHTED (ZOOMED IN) ON 1FJ1&amp;gt;&amp;gt; to OspA &amp;lt;&amp;lt;SHOW OSPA HIGHLIGHTED ON 1FJ1&amp;gt;&amp;gt;, and how effective a vaccine is correlated with LA-2 binding. 5&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;Structure of OspA&amp;lt;/h2&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;Structure load=&amp;quot;1fj1&amp;quot; size=&amp;quot;350&amp;quot; frame=&amp;quot;true&amp;quot; align=&amp;quot;right&amp;quot; name=&amp;quot;OspA-manip&amp;quot; caption=&amp;quot;Outer surface protein A (OspA) ([[1fj1|1FJ1]], chain F)&amp;quot; scene=&amp;quot;Studio:G2SecL03/Ospa_3loopscartoon/3&amp;quot;/&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
OspA is made up of 273 residues over 21 anti-parallel β-sheets and a single α-helix. It&#039;s folded conformation is divided into three main sections: a N-terminus &amp;quot;sandwich,&amp;quot; a central region comprising of several β-sheets and a C-terminus &amp;quot;barrel&amp;quot; domain.&amp;lt;ref name=&amp;quot;ding&amp;quot;&amp;gt;PMID: 11183781&amp;lt;/ref&amp;gt; The folded regions at its ends connected by a single β-sheet layer in the middle gives the unique appearance of a dumbbell shape.&amp;lt;ref name=&amp;quot;makabe&amp;quot;&amp;gt;PMID: 16823038&amp;lt;/ref&amp;gt; &lt;br /&gt;
&lt;br /&gt;
There are &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops/4&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;three loops&amp;lt;/scene&amp;gt; at the C-terminus of OspA that are important in binding with the LA-2 Fab antibody, whose interactions provide great insight into vaccine research and effectiveness. Within these loops, there are &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-nor/3&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;three residues&amp;lt;/scene&amp;gt; &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-r/2&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;(show residue R-groups)&amp;lt;/scene&amp;gt; where there is distinct variation between the different strains of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; and serve as potential targets for the creation of a broader vaccine.&amp;lt;ref name=&amp;quot;ding&amp;quot;&amp;gt;PMID: 11183781&amp;lt;/ref&amp;gt; &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops3res/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;(display both the three loops and three residues together)&amp;lt;/scene&amp;gt; &lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Loop 1 &amp;lt;&amp;lt;LOOP 1&amp;gt;&amp;gt;, residues 206 and 216, has an important role in binding due to a large exposed surface area, high mobility. Loop 2 &amp;lt;&amp;lt;LOOP 2&amp;gt;&amp;gt;, residues 224-233, and Loop 3 &amp;lt;&amp;lt;LOOP 3&amp;gt;&amp;gt;, residues 246-257, are also areas that are involved in binding. LA-2 recognizes OspA Bb, but does not recognize OspA from Bg.and Ba. Between Bb. and Ba. genetic sequences are generally invariant, but two residues change between the species, ALA 208 &amp;lt;&amp;lt;ALA 208&amp;gt;&amp;gt; in Bb. is GLN in Ba., and ASN 251 &amp;lt;&amp;lt;ASN 251&amp;gt;&amp;gt; in Bb. is ALA in Ba.. Bg. has more variation and in addition to the previous two differences, has at least one more difference, where ALA 215 &amp;lt;&amp;lt;ALA 215&amp;gt;&amp;gt; in Bb. is LYS, Bg. sometimes also has a deletion at Bb.’s ALA 208. LA-2 and OspA of Bb. form a tight interface when binding, and the longer GLN sidechain found in Ba. and Bg. is more difficult to accommodate, causing less binding. A chimera that was weakly recognized by LA-2 was made with parts of loop 1 from Bb., and loops 2 and 3 from Bg. 5 Recently, a different kind of chimera has been made which combined the proximal region of Bb. and distal region of Ba., and was able to successfully protect mice from both species. 8&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h3&amp;gt;Reference List of Available Scenes for OspA&amp;lt;/h3&amp;gt;&lt;br /&gt;
&amp;lt;ul&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa_3loopscartoon/3&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Reset model&amp;lt;/scene&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops/4&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Three loops&amp;lt;/scene&amp;gt; in C-terminus (close up)&amp;lt;/li&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-nor/3&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Three residues&amp;lt;/scene&amp;gt; in C-terminus (Ala208, Ala215 and Asn251 in &amp;lt;i&amp;gt;B. burgdorferi&amp;lt;/i&amp;gt;, also hides R-groups)&lt;br /&gt;
         &amp;lt;ul&amp;gt;&lt;br /&gt;
           &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-r/2&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Display R-groups&amp;lt;/scene&amp;gt; of Ala208, Ala215 and Asn251&amp;lt;/li&amp;gt;&lt;br /&gt;
         &amp;lt;/ul&amp;gt;&lt;br /&gt;
     &amp;lt;/li&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops3res/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Three loops and all three residues (with R-groups included)&amp;lt;/scene&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
&amp;lt;/ul&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;References&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;references /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;External Links&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;ul&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://www.who.int/ith/diseases/lyme/en/index.html World Health Organization: Lyme Disease]&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://www.ncbi.nlm.nih.gov/pubmedhealth/PMH0002296/ PubMed Health: Lyme Disease]&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://www.aldf.com/ American Lyme Disease Foundation]&lt;br /&gt;
&amp;lt;/ul&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;Proteopedia Page Contributors and Editors&amp;lt;/h2&amp;gt;&lt;br /&gt;
[http://proteopedia.org/wiki/index.php/User:Kimberly_Slade Kimberly Slade], [http://proteopedia.org/wiki/index.php/User:Cara_Lin Cara Lin], [http://proteopedia.org/wiki/index.php/User:Andrea_Mullen Andrea Mullen], [http://proteopedia.org/wiki/index.php/User:Jenny_Kim_Kim Jenny Kim Kim]&lt;br /&gt;
&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&lt;/div&gt;</summary>
		<author><name>Jenny Kim Kim</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=User:Marvin_O%27Neal/OspA&amp;diff=1384326</id>
		<title>User:Marvin O&#039;Neal/OspA</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=User:Marvin_O%27Neal/OspA&amp;diff=1384326"/>
		<updated>2012-05-02T13:33:08Z</updated>

		<summary type="html">&lt;p&gt;Jenny Kim Kim: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;Structure load=&amp;quot;1fj1&amp;quot; size=&amp;quot;350&amp;quot; frame=&amp;quot;true&amp;quot; align=&amp;quot;right&amp;quot; name=&amp;quot;OspA-secondary&amp;quot; caption=&amp;quot;Outer surface protein A (OspA) ([[1fj1|1FJ1]], chain F) showing secondary structures.&amp;quot; scene=&amp;quot;Studio:G2SecL03/Ospa_default/5&amp;quot;/&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
&amp;lt;b&amp;gt;Outer Surface Protein A (OspA)&amp;lt;/b&amp;gt; &amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;is a major lipoprotein found on the surface of [http://en.wikipedia.org/wiki/Spirochaete spirochetes] from the genus [http://en.wikipedia.org/wiki/Borrelia &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt;] and is comprised of 21 anti-parallel β-sheets and a single α-helix. OspA&#039;s expression is regulated at different points in time, from being downregulated during the tick&#039;s feeding process on its host to being upregulated in the host&#039;s cerebrospinal fluid (CSF) to induce inflammatory response, resulting in acute Lyme [http://en.wikipedia.org/wiki/Neuroborreliosis neuroborreliosis]. OspA has also been used as a vector in working towards the development of a vaccine for [http://en.wikipedia.org/wiki/Lyme_disease Lyme disease].&amp;lt;/span&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;b&amp;gt;&amp;lt;SPAN STYLE=&amp;quot;color:red&amp;quot;&amp;gt;NOTE: Red text indicates changes/additions I&#039;ve made and&amp;lt;/span&amp;gt; &amp;lt;SPAN STYLE=&amp;quot;color:black; background:yellow&amp;quot;&amp;gt;this style&amp;lt;/span&amp;gt; &amp;lt;SPAN STYLE=&amp;quot;color:red&amp;quot;&amp;gt;is pertinent thoughts/questions we should consider/address. All of this will be cleaned up for the final submitted page. ~Kim&amp;lt;/span&amp;gt;&amp;lt;/b&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;Introduction&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Lyme disease is caused by the spirochete &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; and spread via hard-bodied ticks belonging to the family [http://en.wikipedia.org/wiki/Ixodidae &amp;lt;i&amp;gt;Ixodidae&amp;lt;/i&amp;gt;]. The &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; spirochetes are motile, helical organisms &amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;have several lipoproteins exposed on the surfaces of their membranes that invoke a response from host immune systems. The predominant group of these is classified as the outer surface proteins (Osps). Both the pathogenesis of Lyme disease as well as the host&#039;s immune response stem from the effects of the spirochete&#039;s presence and involvement in the system.&amp;lt;/span&amp;gt;&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
The major strain of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; in the United States is [http://en.wikipedia.org/wiki/Borrelia_burgdorferi &amp;lt;i&amp;gt;Borrelia burgdorferi&amp;lt;/i&amp;gt;] &amp;lt;i&amp;gt;sensu stricto (Bb.)&amp;lt;/i&amp;gt;, with 20-100 cases of Lyme disease being reported per 100,000 people. In Europe, Lyme disease cases are more prevalent, with 100-130 diagnoses per 100,000 people, but are caused by the spirochetes [http://en.wikipedia.org/wiki/Borrelia_afzelii &amp;lt;i&amp;gt;Borrelia afzelii (Ba.)&amp;lt;/i&amp;gt;] and [http://en.wikipedia.org/wiki/Borrelia_garinii &amp;lt;i&amp;gt;Borrelia garinii (Bg.)&amp;lt;/i&amp;gt;] in addition to &amp;lt;i&amp;gt;B. burgdorferi&amp;lt;/i&amp;gt;.&amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;ding&amp;quot;&amp;gt;PMID: 11183781&amp;lt;/ref&amp;gt; &lt;br /&gt;
&lt;br /&gt;
     &amp;lt;SPAN STYLE=&amp;quot;background:yellow&amp;quot;&amp;gt;&amp;lt;b&amp;gt;Do we want to mention the number of Borrelia strains but the fact that there are only 4 which are infectious to humans? - need a reference though&amp;lt;/b&amp;gt;&amp;lt;/span&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Lyme disease is a debilitating condition that begins with a characteristic bullseye rash known as an [http://en.wikipedia.org/wiki/Erythema_chronicum_migrans erythema migrans (EM)] as well as &amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;the development of lesions on other parts of the body, not just at the site of the tick&#039;s attachment to its host&amp;lt;/span&amp;gt;. Secondary stage symptoms include affecting the heart, joints, and both the central and peripheral nervous systems. &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; has two major outer surface lipoproteins that are involved in Lyme disease: OspA and OspB. OspA is used in adhering to the tick&#039;s gut by binding with the tick receptor (TROSPA) &lt;br /&gt;
&lt;br /&gt;
     &amp;lt;SPAN STYLE=&amp;quot;background:yellow&amp;quot;&amp;gt;&amp;lt;b&amp;gt;Think a blurb about this would be useful- there isn&#039;t a wiki page for easy reference&amp;lt;/b&amp;gt;&amp;lt;/span&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;During feeding, OspA is downregulated in order to evade an immune response from the incoming host blood into the gut, releasing the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; from the gut wall and migrating into the tick&#039;s salivary glands, thereby allowing it to enter the host through the bite. This is evidenced by the fact that patients with Lyme disease have been found to not possess OspA antibodies in the early stages of the disease.&amp;lt;/span&amp;gt;&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt; OspA is the protein most related to acute Lyme neuroborreliosis (LNB), the neurological manifestations of Lyme disease.  &lt;br /&gt;
&lt;br /&gt;
     &amp;lt;SPAN STYLE=&amp;quot;background:yellow&amp;quot;&amp;gt;&amp;lt;b&amp;gt;We mention &amp;quot;two&amp;quot; proteins involved in Lyme Disease and just &#039;name&#039; OspB but we don&#039;t even have a sentence or two about it in this part?&amp;lt;/b&amp;gt;&amp;lt;/span&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;Once inside the host, the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; has a great number of mechanisms available to actively suppress the host&#039;s immune system response and neutralize its effector mechanisms, such as the expression of another outer surface protein, OspC, which prevents susceptibility to the host&#039;s [http://en.wikipedia.org/wiki/Innate_immune_system innate immunity] and [http://en.wikipedia.org/wiki/Complement_system complement systems]. Additionally, &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; is capable of suppressing many of its surface proteins to reduce its detectability, but can also utilize protective means by temporarily expressing them when needed.&amp;lt;/span&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;OspA &amp;amp; Lyme Disease&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Acute Lyme Neuroborreliosis (LNB) is part of the second stage of Lyme disease in which the spirochete invades the peripheral and central nervous systems (CNS). Symptoms of LNB include: Bannwarth’s Syndrome, Lymphocytic Meningitis, and [http://www.rightdiagnosis.com/sym/cranial_neuritis.htm Cranial] and [http://www.ncbi.nlm.nih.gov/pubmedhealth/PMH0001619/ Peripheral Neuritis]. &amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;The presence of OspA in the cerebrospinal fluid (CSF) is responsible for this complex inflammatory response in the brain that leads to the neuroborreliosis.&amp;lt;/span&amp;gt; The most frequent species of boreelia that is isolated from patients with Bannwarth&#039;s syndrome is &amp;lt;i&amp;gt;B.garini&amp;lt;/i&amp;gt;. In the United States meningitis is the major symptom of Lyme Neuroborreliosis, and Bannwarth&#039;s syndrome is rarely seen.&amp;lt;SPAN STYLE=&amp;quot;background:yellow&amp;quot;&amp;gt;&amp;lt;b&amp;gt;cite me with rupprecht!!&amp;lt;/b&amp;gt;&amp;lt;/span&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
[[Image:G2L03-OspA-mechanism.jpg|thumb|300px|Mechanism of the host inflammatory response to OspA]]&lt;br /&gt;
&lt;br /&gt;
&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;There are six steps involved in the host&#039;s inflammatory response to OspA:&amp;lt;/span&amp;gt; &amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt;&amp;lt;br&amp;gt;&lt;br /&gt;
&amp;lt;ol&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;When the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; enter the host’s CNS they encounter several different types of immune cells such as [http://en.wikipedia.org/wiki/Monocyte monocytes], [http://en.wikipedia.org/wiki/Macrophages macrophages], and [http://en.wikipedia.org/wiki/Dendritic_cells dendritic cells]. While in the CSF, outer surface protein A (OspA) is upregulated and it’s increased expression promotes recognition by a specific receptor on a monocyte.&amp;lt;/span&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;The OspA-bound monocyte then releases proinflammatory [http://en.wikipedia.org/wiki/Cytokine cytokines] (i.e. [http://en.wikipedia.org/wiki/Interferon interferon]), as well as [http://en.wikipedia.org/wiki/Chemokine chemokines], such as [http://en.wikipedia.org/wiki/CXCL13 CXCL13]. In patients with LNB, there is an observed increase in the levels of these cytokines and chemokines in their CSF. The production of chemokines leads to the recruitment of other immune cells to the site of infection.&amp;lt;/span&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;[http://en.wikipedia.org/wiki/B_lymphocyte B-lymphocytes] respond to the new concentration gradient of CXCL13 between the blood and CSF and migrate into the CSF.&amp;lt;/span&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;B-lymphocytes undergo [http://en.wikipedia.org/wiki/Receptor-mediated_endocytosis receptor-mediated endocytosis], consuming the OspA antigens present in the CSF, thereby triggering its activation. The B-lymphocytes then are able to differentiate and mature into  [http://en.wikipedia.org/wiki/Plasma_cells plasma cells].&amp;lt;/span&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;The plasma cells create large quantities of anti-OspA antibodies specific to this strain of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; and release them into the CSF.&amp;lt;/span&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;The anti-OspA antibodies will then bind to the OspA on the spirochete’s membrane, thus killing the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt;.&amp;lt;/span&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
&amp;lt;/ol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;This process is two-sided in the sense that the OspA aids in the pathogenesis of new symptoms (neuroborreliosis) through the chemokine’s actions, as well as initiating the signaling cascade to destroy itself.&amp;lt;/span&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h3&amp;gt;Other Speculations about OspA&#039;s role in Lyme Disease&amp;lt;/h3&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Borrelia have been shown to adhere to murine neural and glial cell lines using OspA. This adherence can be cytotoxic, due to OspA inducing apopotosis and astrogliosis.The borrelia spirochete is able to hide in certain areas of the body, specifically the extracellular matrix. This helps the spirochete survive by hiding from leukocytes circulating in the bloodstream. It is speculated that because OspA can also rapidly bind to plasminogen, and the plasminogen becomes activated plasmin that can degrade the extracellular matrix, borrelia could be using this to help invade the extracellular matrix. However there are also other possible explanations that do not involve OspA. Borrelia lead to local upregulation of the matrix metalloproteinase-9, which caues the digestion of the surrounding extracellular matrix.&amp;lt;SPAN STYLE=&amp;quot;background:yellow&amp;quot;&amp;gt;&amp;lt;b&amp;gt;cite me with rupprecht!!&amp;lt;/b&amp;gt;&amp;lt;/span&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;OspA Vaccination&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Risk of developing Lyme disease can be &amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;mitigated&amp;lt;/span&amp;gt; by staying clear of areas with populations of ticks, wearing proper attire &amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;to minimize easily bitten areas of the body&amp;lt;/span&amp;gt;, and using &amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;insect repellents containing&amp;lt;/span&amp;gt; [http://en.wikipedia.org/wiki/DEET DEET] (N,N-diethy-m-toluamide). However, &amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;another effective means for prevention could be possible&amp;lt;/span&amp;gt; by using an outer surface protein from &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; &amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;in the creation of&amp;lt;/span&amp;gt; a vaccine.&amp;lt;ref name=&amp;quot;nigrovic&amp;quot;&amp;gt;PMID: 16893489&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;The membrane composition of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; is abundant in both OspA and OspB, and the two proteins share a 53% similarity in their primary sequences. Both OspA and OspB are expressed in the tick&#039;s gut and downregulated during feeding and aid in its survivability; however, OspA is overall less varied and reactive than OspB, which has greater variability.&amp;lt;ref name=&amp;quot;becker&amp;quot;&amp;gt;PMID: 15713683&amp;lt;/ref&amp;gt; The relatively conserved sequence of OspA thus lends itself better to study and application toward the development of a vaccine for a broader range of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; strains in the treatment of Lyme disease than that of OspB. The first vaccine used a purified recombinant form of OspA and functioned in blocking transmission of the spirochetes expressing OspA from tick to host during feeding, killing them while still attached to the tick&#039;s gut.&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;battisti&amp;quot;&amp;gt;PMID: 18779341&amp;lt;/ref&amp;gt; The vaccine, Lymerix, had shown 76% and 92% effectiveness in separate clinical trials in which patients were treated for two years following a three-dose schedule. However, the vaccination was suspended from use in 2002 when opponents claimed the [http://en.wikipedia.org/wiki/Immunoglobulin_G IgG antibodies] for OspA were associated with the onset of severe chronic arthritis, as well as other side effects affecting immunity.&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;plotkin&amp;quot;&amp;gt;PMID: 21217175&amp;lt;/ref&amp;gt;  This fact, in conjunction with the desire for a more widespread vaccine treating multiple strains of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt;, has spurred research towards a new vaccine.&lt;br /&gt;
&amp;lt;/span&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/span&amp;gt;&lt;br /&gt;
To address this problem of international protection it would be helpful to create a chimera, mixing the OspA of different species. In order to do this the epitope of OspA should be studied. LA-2 &amp;lt;&amp;lt;SHOW FAB HIGHLIGHTED ON 1FJ1&amp;gt;&amp;gt; is a murine monoclonal antibody that binds strongly &amp;lt;&amp;lt;SHOW INTERACTION HIGHLIGHTED (ZOOMED IN) ON 1FJ1&amp;gt;&amp;gt; to OspA &amp;lt;&amp;lt;SHOW OSPA HIGHLIGHTED ON 1FJ1&amp;gt;&amp;gt;, and how effective a vaccine is correlated with LA-2 binding. 5&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;Structure of OspA&amp;lt;/h2&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;Structure load=&amp;quot;1fj1&amp;quot; size=&amp;quot;350&amp;quot; frame=&amp;quot;true&amp;quot; align=&amp;quot;right&amp;quot; name=&amp;quot;OspA-manip&amp;quot; caption=&amp;quot;Outer surface protein A (OspA) ([[1fj1|1FJ1]], chain F)&amp;quot; scene=&amp;quot;Studio:G2SecL03/Ospa_3loopscartoon/3&amp;quot;/&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
OspA is made up of 273 residues over 21 anti-parallel β-sheets and a single α-helix. It&#039;s folded conformation is divided into three main sections: a N-terminus &amp;quot;sandwich,&amp;quot; a central region comprising of several β-sheets and a C-terminus &amp;quot;barrel&amp;quot; domain.&amp;lt;ref name=&amp;quot;ding&amp;quot;&amp;gt;PMID: 11183781&amp;lt;/ref&amp;gt; The folded regions at its ends connected by a single β-sheet layer in the middle gives the unique appearance of a dumbbell shape.&amp;lt;ref name=&amp;quot;makabe&amp;quot;&amp;gt;PMID: 16823038&amp;lt;/ref&amp;gt; &lt;br /&gt;
&lt;br /&gt;
There are &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops/4&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;three loops&amp;lt;/scene&amp;gt; at the C-terminus of OspA that are important in binding with the LA-2 Fab antibody, whose interactions provide great insight into vaccine research and effectiveness. Within these loops, there are &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-nor/3&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;three residues&amp;lt;/scene&amp;gt; &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-r/2&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;(show residue R-groups)&amp;lt;/scene&amp;gt; where there is distinct variation between the different strains of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; and serve as potential targets for the creation of a broader vaccine.&amp;lt;ref name=&amp;quot;ding&amp;quot;&amp;gt;PMID: 11183781&amp;lt;/ref&amp;gt; &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops3res/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;(display both the three loops and three residues together)&amp;lt;/scene&amp;gt; &lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Loop 1 &amp;lt;&amp;lt;LOOP 1&amp;gt;&amp;gt;, residues 206 and 216, has an important role in binding due to a large exposed surface area, high mobility. Loop 2 &amp;lt;&amp;lt;LOOP 2&amp;gt;&amp;gt;, residues 224-233, and Loop 3 &amp;lt;&amp;lt;LOOP 3&amp;gt;&amp;gt;, residues 246-257, are also areas that are involved in binding. LA-2 recognizes OspA Bb, but does not recognize OspA from Bg.and Ba. Between Bb. and Ba. genetic sequences are generally invariant, but two residues change between the species, ALA 208 &amp;lt;&amp;lt;ALA 208&amp;gt;&amp;gt; in Bb. is GLN in Ba., and ASN 251 &amp;lt;&amp;lt;ASN 251&amp;gt;&amp;gt; in Bb. is ALA in Ba.. Bg. has more variation and in addition to the previous two differences, has at least one more difference, where ALA 215 &amp;lt;&amp;lt;ALA 215&amp;gt;&amp;gt; in Bb. is LYS, Bg. sometimes also has a deletion at Bb.’s ALA 208. LA-2 and OspA of Bb. form a tight interface when binding, and the longer GLN sidechain found in Ba. and Bg. is more difficult to accommodate, causing less binding. A chimera that was weakly recognized by LA-2 was made with parts of loop 1 from Bb., and loops 2 and 3 from Bg. 5 Recently, a different kind of chimera has been made which combined the proximal region of Bb. and distal region of Ba., and was able to successfully protect mice from both species. 8&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h3&amp;gt;Reference List of Available Scenes for OspA&amp;lt;/h3&amp;gt;&lt;br /&gt;
&amp;lt;ul&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa_3loopscartoon/3&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Reset model&amp;lt;/scene&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops/4&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Three loops&amp;lt;/scene&amp;gt; in C-terminus (close up)&amp;lt;/li&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-nor/3&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Three residues&amp;lt;/scene&amp;gt; in C-terminus (Ala208, Ala215 and Asn251 in &amp;lt;i&amp;gt;B. burgdorferi&amp;lt;/i&amp;gt;, also hides R-groups)&lt;br /&gt;
         &amp;lt;ul&amp;gt;&lt;br /&gt;
           &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-r/2&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Display R-groups&amp;lt;/scene&amp;gt; of Ala208, Ala215 and Asn251&amp;lt;/li&amp;gt;&lt;br /&gt;
         &amp;lt;/ul&amp;gt;&lt;br /&gt;
     &amp;lt;/li&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops3res/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Three loops and all three residues (with R-groups included)&amp;lt;/scene&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
&amp;lt;/ul&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;References&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;references /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;External Links&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;ul&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://www.who.int/ith/diseases/lyme/en/index.html World Health Organization: Lyme Disease]&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://www.ncbi.nlm.nih.gov/pubmedhealth/PMH0002296/ PubMed Health: Lyme Disease]&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://www.aldf.com/ American Lyme Disease Foundation]&lt;br /&gt;
&amp;lt;/ul&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;Proteopedia Page Contributors and Editors&amp;lt;/h2&amp;gt;&lt;br /&gt;
[http://proteopedia.org/wiki/index.php/User:Kimberly_Slade Kimberly Slade], [http://proteopedia.org/wiki/index.php/User:Cara_Lin Cara Lin], [http://proteopedia.org/wiki/index.php/User:Andrea_Mullen Andrea Mullen], [http://proteopedia.org/wiki/index.php/User:Jenny_Kim_Kim Jenny Kim Kim]&lt;br /&gt;
&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&lt;/div&gt;</summary>
		<author><name>Jenny Kim Kim</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=User:Marvin_O%27Neal/OspA&amp;diff=1384321</id>
		<title>User:Marvin O&#039;Neal/OspA</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=User:Marvin_O%27Neal/OspA&amp;diff=1384321"/>
		<updated>2012-05-02T13:20:15Z</updated>

		<summary type="html">&lt;p&gt;Jenny Kim Kim: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;Structure load=&amp;quot;1fj1&amp;quot; size=&amp;quot;350&amp;quot; frame=&amp;quot;true&amp;quot; align=&amp;quot;right&amp;quot; name=&amp;quot;OspA-secondary&amp;quot; caption=&amp;quot;Outer surface protein A (OspA) ([[1fj1|1FJ1]], chain F) showing secondary structures.&amp;quot; scene=&amp;quot;Studio:G2SecL03/Ospa_default/5&amp;quot;/&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
&amp;lt;b&amp;gt;Outer Surface Protein A (OspA)&amp;lt;/b&amp;gt; &amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;is a major lipoprotein found on the surface of [http://en.wikipedia.org/wiki/Spirochaete spirochetes] from the genus [http://en.wikipedia.org/wiki/Borrelia &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt;] and is comprised of 21 anti-parallel β-sheets and a single α-helix. OspA&#039;s expression is regulated at different points in time, from being downregulated during the tick&#039;s feeding process on its host to being upregulated in the host&#039;s cerebrospinal fluid (CSF) to induce inflammatory response, resulting in acute Lyme [http://en.wikipedia.org/wiki/Neuroborreliosis neuroborreliosis]. OspA has also been used as a vector in working towards the development of a vaccine for [http://en.wikipedia.org/wiki/Lyme_disease Lyme disease].&amp;lt;/span&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;b&amp;gt;&amp;lt;SPAN STYLE=&amp;quot;color:red&amp;quot;&amp;gt;NOTE: Red text indicates changes/additions I&#039;ve made and&amp;lt;/span&amp;gt; &amp;lt;SPAN STYLE=&amp;quot;color:black; background:yellow&amp;quot;&amp;gt;this style&amp;lt;/span&amp;gt; &amp;lt;SPAN STYLE=&amp;quot;color:red&amp;quot;&amp;gt;is pertinent thoughts/questions we should consider/address. All of this will be cleaned up for the final submitted page. ~Kim&amp;lt;/span&amp;gt;&amp;lt;/b&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;Introduction&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Lyme disease is caused by the spirochete &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; and spread via hard-bodied ticks belonging to the family [http://en.wikipedia.org/wiki/Ixodidae &amp;lt;i&amp;gt;Ixodidae&amp;lt;/i&amp;gt;]. The &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; spirochetes are motile, helical organisms &amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;have several lipoproteins exposed on the surfaces of their membranes that invoke a response from host immune systems. The predominant group of these is classified as the outer surface proteins (Osps). Both the pathogenesis of Lyme disease as well as the host&#039;s immune response stem from the effects of the spirochete&#039;s presence and involvement in the system.&amp;lt;/span&amp;gt;&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
The major strain of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; in the United States is [http://en.wikipedia.org/wiki/Borrelia_burgdorferi &amp;lt;i&amp;gt;Borrelia burgdorferi&amp;lt;/i&amp;gt;] &amp;lt;i&amp;gt;sensu stricto (Bb.)&amp;lt;/i&amp;gt;, with 20-100 cases of Lyme disease being reported per 100,000 people. In Europe, Lyme disease cases are more prevalent, with 100-130 diagnoses per 100,000 people, but are caused by the spirochetes [http://en.wikipedia.org/wiki/Borrelia_afzelii &amp;lt;i&amp;gt;Borrelia afzelii (Ba.)&amp;lt;/i&amp;gt;] and [http://en.wikipedia.org/wiki/Borrelia_garinii &amp;lt;i&amp;gt;Borrelia garinii (Bg.)&amp;lt;/i&amp;gt;] in addition to &amp;lt;i&amp;gt;B. burgdorferi&amp;lt;/i&amp;gt;.&amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;ding&amp;quot;&amp;gt;PMID: 11183781&amp;lt;/ref&amp;gt; &lt;br /&gt;
&lt;br /&gt;
     &amp;lt;SPAN STYLE=&amp;quot;background:yellow&amp;quot;&amp;gt;&amp;lt;b&amp;gt;Do we want to mention the number of Borrelia strains but the fact that there are only 4 which are infectious to humans? - need a reference though&amp;lt;/b&amp;gt;&amp;lt;/span&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Lyme disease is a debilitating condition that begins with a characteristic bullseye rash known as an [http://en.wikipedia.org/wiki/Erythema_chronicum_migrans erythema migrans (EM)] as well as &amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;the development of lesions on other parts of the body, not just at the site of the tick&#039;s attachment to its host&amp;lt;/span&amp;gt;. Secondary stage symptoms include affecting the heart, joints, and both the central and peripheral nervous systems. &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; has two major outer surface lipoproteins that are involved in Lyme disease: OspA and OspB. OspA is used in adhering to the tick&#039;s gut by binding with the tick receptor (TROSPA) &lt;br /&gt;
&lt;br /&gt;
     &amp;lt;SPAN STYLE=&amp;quot;background:yellow&amp;quot;&amp;gt;&amp;lt;b&amp;gt;Think a blurb about this would be useful- there isn&#039;t a wiki page for easy reference&amp;lt;/b&amp;gt;&amp;lt;/span&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;During feeding, OspA is downregulated in order to evade an immune response from the incoming host blood into the gut, releasing the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; from the gut wall and migrating into the tick&#039;s salivary glands, thereby allowing it to enter the host through the bite. This is evidenced by the fact that patients with Lyme disease have been found to not possess OspA antibodies in the early stages of the disease.&amp;lt;/span&amp;gt;&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt; OspA is the protein most related to acute Lyme neuroborreliosis (LNB), the neurological manifestations of Lyme disease.  &lt;br /&gt;
&lt;br /&gt;
     &amp;lt;SPAN STYLE=&amp;quot;background:yellow&amp;quot;&amp;gt;&amp;lt;b&amp;gt;We mention &amp;quot;two&amp;quot; proteins involved in Lyme Disease and just &#039;name&#039; OspB but we don&#039;t even have a sentence or two about it in this part?&amp;lt;/b&amp;gt;&amp;lt;/span&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;Once inside the host, the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; has a great number of mechanisms available to actively suppress the host&#039;s immune system response and neutralize its effector mechanisms, such as the expression of another outer surface protein, OspC, which prevents susceptibility to the host&#039;s [http://en.wikipedia.org/wiki/Innate_immune_system innate immunity] and [http://en.wikipedia.org/wiki/Complement_system complement systems]. Additionally, &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; is capable of suppressing many of its surface proteins to reduce its detectability, but can also utilize protective means by temporarily expressing them when needed.&amp;lt;/span&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;OspA &amp;amp; Lyme Disease&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Acute Lyme Neuroborreliosis (LNB) is part of the second stage of Lyme disease in which the spirochete invades the peripheral and central nervous systems (CNS). Symptoms of LNB include: Bannwarth’s Syndrome, Lymphocytic Meningitis, and [http://www.rightdiagnosis.com/sym/cranial_neuritis.htm Cranial] and [http://www.ncbi.nlm.nih.gov/pubmedhealth/PMH0001619/ Peripheral Neuritis]. &amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;The presence of OspA in the cerebrospinal fluid (CSF) is responsible for this complex inflammatory response in the brain that leads to the neuroborreliosis.&amp;lt;/span&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
[[Image:G2L03-OspA-mechanism.jpg|thumb|300px|Mechanism of the host inflammatory response to OspA]]&lt;br /&gt;
&lt;br /&gt;
&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;There are six steps involved in the host&#039;s inflammatory response to OspA:&amp;lt;/span&amp;gt; &amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt;&amp;lt;br&amp;gt;&lt;br /&gt;
&amp;lt;ol&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;When the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; enter the host’s CNS they encounter several different types of immune cells such as [http://en.wikipedia.org/wiki/Monocyte monocytes], [http://en.wikipedia.org/wiki/Macrophages macrophages], and [http://en.wikipedia.org/wiki/Dendritic_cells dendritic cells]. While in the CSF, outer surface protein A (OspA) is upregulated and it’s increased expression promotes recognition by a specific receptor on a monocyte.&amp;lt;/span&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;The OspA-bound monocyte then releases proinflammatory [http://en.wikipedia.org/wiki/Cytokine cytokines] (i.e. [http://en.wikipedia.org/wiki/Interferon interferon]), as well as [http://en.wikipedia.org/wiki/Chemokine chemokines], such as [http://en.wikipedia.org/wiki/CXCL13 CXCL13]. In patients with LNB, there is an observed increase in the levels of these cytokines and chemokines in their CSF. The production of chemokines leads to the recruitment of other immune cells to the site of infection.&amp;lt;/span&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;[http://en.wikipedia.org/wiki/B_lymphocyte B-lymphocytes] respond to the new concentration gradient of CXCL13 between the blood and CSF and migrate into the CSF.&amp;lt;/span&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;B-lymphocytes undergo [http://en.wikipedia.org/wiki/Receptor-mediated_endocytosis receptor-mediated endocytosis], consuming the OspA antigens present in the CSF, thereby triggering its activation. The B-lymphocytes then are able to differentiate and mature into  [http://en.wikipedia.org/wiki/Plasma_cells plasma cells].&amp;lt;/span&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;The plasma cells create large quantities of anti-OspA antibodies specific to this strain of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; and release them into the CSF.&amp;lt;/span&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;The anti-OspA antibodies will then bind to the OspA on the spirochete’s membrane, thus killing the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt;.&amp;lt;/span&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
&amp;lt;/ol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;This process is two-sided in the sense that the OspA aids in the pathogenesis of new symptoms (neuroborreliosis) through the chemokine’s actions, as well as initiating the signaling cascade to destroy itself.&amp;lt;/span&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h3&amp;gt;Other Speculations about OspA&#039;s role in Lyme Disease&amp;lt;/h3&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Borrelia have been shown to adhere to murine neural and glial cell lines using OspA. This adherence can be cytotoxic, due to OspA inducing apopotosis and astrogliosis.The borrelia spirochete is able to hide in certain areas of the body, specifically the extracellular matrix. This helps the spirochete survive by hiding from leukocytes circulating in the bloodstream. It is speculated that because OspA can also rapidly bind to plasminogen, and the plasminogen becomes activated plasmin that can degrade the extracellular matrix, borrelia could be using this to help invade the extracellular matrix. However there are also other possible explanations that do not involve OspA. Borrelia lead to local upregulation of the matrix metalloproteinase-9, which caues the digestion of the surrounding extracellular matrix.&amp;lt;SPAN STYLE=&amp;quot;background:yellow&amp;quot;&amp;gt;&amp;lt;b&amp;gt;cite me with rupprecht!!&amp;lt;/b&amp;gt;&amp;lt;/span&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;OspA Vaccination&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Risk of developing Lyme disease can be &amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;mitigated&amp;lt;/span&amp;gt; by staying clear of areas with populations of ticks, wearing proper attire &amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;to minimize easily bitten areas of the body&amp;lt;/span&amp;gt;, and using &amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;insect repellents containing&amp;lt;/span&amp;gt; [http://en.wikipedia.org/wiki/DEET DEET] (N,N-diethy-m-toluamide). However, &amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;another effective means for prevention could be possible&amp;lt;/span&amp;gt; by using an outer surface protein from &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; &amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;in the creation of&amp;lt;/span&amp;gt; a vaccine.&amp;lt;ref name=&amp;quot;nigrovic&amp;quot;&amp;gt;PMID: 16893489&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;The membrane composition of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; is abundant in both OspA and OspB, and the two proteins share a 53% similarity in their primary sequences. Both OspA and OspB are expressed in the tick&#039;s gut and downregulated during feeding and aid in its survivability; however, OspA is overall less varied and reactive than OspB, which has greater variability.&amp;lt;ref name=&amp;quot;becker&amp;quot;&amp;gt;PMID: 15713683&amp;lt;/ref&amp;gt; The relatively conserved sequence of OspA thus lends itself better to study and application toward the development of a vaccine for a broader range of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; strains in the treatment of Lyme disease than that of OspB. The first vaccine used a purified recombinant form of OspA and functioned in blocking transmission of the spirochetes expressing OspA from tick to host during feeding, killing them while still attached to the tick&#039;s gut.&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;battisti&amp;quot;&amp;gt;PMID: 18779341&amp;lt;/ref&amp;gt; The vaccine, Lymerix, had shown 76% and 92% effectiveness in separate clinical trials in which patients were treated for two years following a three-dose schedule. However, the vaccination was suspended from use in 2002 when opponents claimed the [http://en.wikipedia.org/wiki/Immunoglobulin_G IgG antibodies] for OspA were associated with the onset of severe chronic arthritis, as well as other side effects affecting immunity.&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;plotkin&amp;quot;&amp;gt;PMID: 21217175&amp;lt;/ref&amp;gt;  This fact, in conjunction with the desire for a more widespread vaccine treating multiple strains of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt;, has spurred research towards a new vaccine.&lt;br /&gt;
&amp;lt;/span&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/span&amp;gt;&lt;br /&gt;
To address this problem of international protection it would be helpful to create a chimera, mixing the OspA of different species. In order to do this the epitope of OspA should be studied. LA-2 &amp;lt;&amp;lt;SHOW FAB HIGHLIGHTED ON 1FJ1&amp;gt;&amp;gt; is a murine monoclonal antibody that binds strongly &amp;lt;&amp;lt;SHOW INTERACTION HIGHLIGHTED (ZOOMED IN) ON 1FJ1&amp;gt;&amp;gt; to OspA &amp;lt;&amp;lt;SHOW OSPA HIGHLIGHTED ON 1FJ1&amp;gt;&amp;gt;, and how effective a vaccine is correlated with LA-2 binding. 5&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;Structure of OspA&amp;lt;/h2&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;Structure load=&amp;quot;1fj1&amp;quot; size=&amp;quot;350&amp;quot; frame=&amp;quot;true&amp;quot; align=&amp;quot;right&amp;quot; name=&amp;quot;OspA-manip&amp;quot; caption=&amp;quot;Outer surface protein A (OspA) ([[1fj1|1FJ1]], chain F)&amp;quot; scene=&amp;quot;Studio:G2SecL03/Ospa_3loopscartoon/3&amp;quot;/&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
OspA is made up of 273 residues over 21 anti-parallel β-sheets and a single α-helix. It&#039;s folded conformation is divided into three main sections: a N-terminus &amp;quot;sandwich,&amp;quot; a central region comprising of several β-sheets and a C-terminus &amp;quot;barrel&amp;quot; domain.&amp;lt;ref name=&amp;quot;ding&amp;quot;&amp;gt;PMID: 11183781&amp;lt;/ref&amp;gt; The folded regions at its ends connected by a single β-sheet layer in the middle gives the unique appearance of a dumbbell shape.&amp;lt;ref name=&amp;quot;makabe&amp;quot;&amp;gt;PMID: 16823038&amp;lt;/ref&amp;gt; &lt;br /&gt;
&lt;br /&gt;
There are &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops/4&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;three loops&amp;lt;/scene&amp;gt; at the C-terminus of OspA that are important in binding with the LA-2 Fab antibody, whose interactions provide great insight into vaccine research and effectiveness. Within these loops, there are &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-nor/3&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;three residues&amp;lt;/scene&amp;gt; &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-r/2&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;(show residue R-groups)&amp;lt;/scene&amp;gt; where there is distinct variation between the different strains of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; and serve as potential targets for the creation of a broader vaccine.&amp;lt;ref name=&amp;quot;ding&amp;quot;&amp;gt;PMID: 11183781&amp;lt;/ref&amp;gt; &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops3res/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;(display both the three loops and three residues together)&amp;lt;/scene&amp;gt; &lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Loop 1 &amp;lt;&amp;lt;LOOP 1&amp;gt;&amp;gt;, residues 206 and 216, has an important role in binding due to a large exposed surface area, high mobility. Loop 2 &amp;lt;&amp;lt;LOOP 2&amp;gt;&amp;gt;, residues 224-233, and Loop 3 &amp;lt;&amp;lt;LOOP 3&amp;gt;&amp;gt;, residues 246-257, are also areas that are involved in binding. LA-2 recognizes OspA Bb, but does not recognize OspA from Bg.and Ba. Between Bb. and Ba. genetic sequences are generally invariant, but two residues change between the species, ALA 208 &amp;lt;&amp;lt;ALA 208&amp;gt;&amp;gt; in Bb. is GLN in Ba., and ASN 251 &amp;lt;&amp;lt;ASN 251&amp;gt;&amp;gt; in Bb. is ALA in Ba.. Bg. has more variation and in addition to the previous two differences, has at least one more difference, where ALA 215 &amp;lt;&amp;lt;ALA 215&amp;gt;&amp;gt; in Bb. is LYS, Bg. sometimes also has a deletion at Bb.’s ALA 208. LA-2 and OspA of Bb. form a tight interface when binding, and the longer GLN sidechain found in Ba. and Bg. is more difficult to accommodate, causing less binding. A chimera that was weakly recognized by LA-2 was made with parts of loop 1 from Bb., and loops 2 and 3 from Bg. 5 Recently, a different kind of chimera has been made which combined the proximal region of Bb. and distal region of Ba., and was able to successfully protect mice from both species. 8&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h3&amp;gt;Reference List of Available Scenes for OspA&amp;lt;/h3&amp;gt;&lt;br /&gt;
&amp;lt;ul&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa_3loopscartoon/3&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Reset model&amp;lt;/scene&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops/4&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Three loops&amp;lt;/scene&amp;gt; in C-terminus (close up)&amp;lt;/li&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-nor/3&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Three residues&amp;lt;/scene&amp;gt; in C-terminus (Ala208, Ala215 and Asn251 in &amp;lt;i&amp;gt;B. burgdorferi&amp;lt;/i&amp;gt;, also hides R-groups)&lt;br /&gt;
         &amp;lt;ul&amp;gt;&lt;br /&gt;
           &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-r/2&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Display R-groups&amp;lt;/scene&amp;gt; of Ala208, Ala215 and Asn251&amp;lt;/li&amp;gt;&lt;br /&gt;
         &amp;lt;/ul&amp;gt;&lt;br /&gt;
     &amp;lt;/li&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops3res/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Three loops and all three residues (with R-groups included)&amp;lt;/scene&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
&amp;lt;/ul&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;References&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;references /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;External Links&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;ul&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://www.who.int/ith/diseases/lyme/en/index.html World Health Organization: Lyme Disease]&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://www.ncbi.nlm.nih.gov/pubmedhealth/PMH0002296/ PubMed Health: Lyme Disease]&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://www.aldf.com/ American Lyme Disease Foundation]&lt;br /&gt;
&amp;lt;/ul&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;Proteopedia Page Contributors and Editors&amp;lt;/h2&amp;gt;&lt;br /&gt;
[http://proteopedia.org/wiki/index.php/User:Kimberly_Slade Kimberly Slade], [http://proteopedia.org/wiki/index.php/User:Cara_Lin Cara Lin], [http://proteopedia.org/wiki/index.php/User:Andrea_Mullen Andrea Mullen], [http://proteopedia.org/wiki/index.php/User:Jenny_Kim_Kim Jenny Kim Kim]&lt;br /&gt;
&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&lt;/div&gt;</summary>
		<author><name>Jenny Kim Kim</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=User:Marvin_O%27Neal/OspA&amp;diff=1384318</id>
		<title>User:Marvin O&#039;Neal/OspA</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=User:Marvin_O%27Neal/OspA&amp;diff=1384318"/>
		<updated>2012-05-02T13:16:38Z</updated>

		<summary type="html">&lt;p&gt;Jenny Kim Kim: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;Structure load=&amp;quot;1fj1&amp;quot; size=&amp;quot;350&amp;quot; frame=&amp;quot;true&amp;quot; align=&amp;quot;right&amp;quot; name=&amp;quot;OspA-secondary&amp;quot; caption=&amp;quot;Outer surface protein A (OspA) ([[1fj1|1FJ1]], chain F) showing secondary structures.&amp;quot; scene=&amp;quot;Studio:G2SecL03/Ospa_default/5&amp;quot;/&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
&amp;lt;b&amp;gt;Outer Surface Protein A (OspA)&amp;lt;/b&amp;gt; &amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;is a major lipoprotein found on the surface of [http://en.wikipedia.org/wiki/Spirochaete spirochetes] from the genus [http://en.wikipedia.org/wiki/Borrelia &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt;] and is comprised of 21 anti-parallel β-sheets and a single α-helix. OspA&#039;s expression is regulated at different points in time, from being downregulated during the tick&#039;s feeding process on its host to being upregulated in the host&#039;s cerebrospinal fluid (CSF) to induce inflammatory response, resulting in acute Lyme [http://en.wikipedia.org/wiki/Neuroborreliosis neuroborreliosis]. OspA has also been used as a vector in working towards the development of a vaccine for [http://en.wikipedia.org/wiki/Lyme_disease Lyme disease].&amp;lt;/span&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;b&amp;gt;&amp;lt;SPAN STYLE=&amp;quot;color:red&amp;quot;&amp;gt;NOTE: Red text indicates changes/additions I&#039;ve made and&amp;lt;/span&amp;gt; &amp;lt;SPAN STYLE=&amp;quot;color:black; background:yellow&amp;quot;&amp;gt;this style&amp;lt;/span&amp;gt; &amp;lt;SPAN STYLE=&amp;quot;color:red&amp;quot;&amp;gt;is pertinent thoughts/questions we should consider/address. All of this will be cleaned up for the final submitted page. ~Kim&amp;lt;/span&amp;gt;&amp;lt;/b&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;Introduction&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Lyme disease is caused by the spirochete &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; and spread via hard-bodied ticks belonging to the family [http://en.wikipedia.org/wiki/Ixodidae &amp;lt;i&amp;gt;Ixodidae&amp;lt;/i&amp;gt;]. The &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; spirochetes are motile, helical organisms &amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;have several lipoproteins exposed on the surfaces of their membranes that invoke a response from host immune systems. The predominant group of these is classified as the outer surface proteins (Osps). Both the pathogenesis of Lyme disease as well as the host&#039;s immune response stem from the effects of the spirochete&#039;s presence and involvement in the system.&amp;lt;/span&amp;gt;&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
The major strain of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; in the United States is [http://en.wikipedia.org/wiki/Borrelia_burgdorferi &amp;lt;i&amp;gt;Borrelia burgdorferi&amp;lt;/i&amp;gt;] &amp;lt;i&amp;gt;sensu stricto (Bb.)&amp;lt;/i&amp;gt;, with 20-100 cases of Lyme disease being reported per 100,000 people. In Europe, Lyme disease cases are more prevalent, with 100-130 diagnoses per 100,000 people, but are caused by the spirochetes [http://en.wikipedia.org/wiki/Borrelia_afzelii &amp;lt;i&amp;gt;Borrelia afzelii (Ba.)&amp;lt;/i&amp;gt;] and [http://en.wikipedia.org/wiki/Borrelia_garinii &amp;lt;i&amp;gt;Borrelia garinii (Bg.)&amp;lt;/i&amp;gt;] in addition to &amp;lt;i&amp;gt;B. burgdorferi&amp;lt;/i&amp;gt;.&amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;ding&amp;quot;&amp;gt;PMID: 11183781&amp;lt;/ref&amp;gt; &lt;br /&gt;
&lt;br /&gt;
     &amp;lt;SPAN STYLE=&amp;quot;background:yellow&amp;quot;&amp;gt;&amp;lt;b&amp;gt;Do we want to mention the number of Borrelia strains but the fact that there are only 4 which are infectious to humans? - need a reference though&amp;lt;/b&amp;gt;&amp;lt;/span&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Lyme disease is a debilitating condition that begins with a characteristic bullseye rash known as an [http://en.wikipedia.org/wiki/Erythema_chronicum_migrans erythema migrans (EM)] as well as &amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;the development of lesions on other parts of the body, not just at the site of the tick&#039;s attachment to its host&amp;lt;/span&amp;gt;. Secondary stage symptoms include affecting the heart, joints, and both the central and peripheral nervous systems. &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; has two major outer surface lipoproteins that are involved in Lyme disease: OspA and OspB. OspA is used in adhering to the tick&#039;s gut by binding with the tick receptor (TROSPA) &lt;br /&gt;
&lt;br /&gt;
     &amp;lt;SPAN STYLE=&amp;quot;background:yellow&amp;quot;&amp;gt;&amp;lt;b&amp;gt;Think a blurb about this would be useful- there isn&#039;t a wiki page for easy reference&amp;lt;/b&amp;gt;&amp;lt;/span&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;During feeding, OspA is downregulated in order to evade an immune response from the incoming host blood into the gut, releasing the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; from the gut wall and migrating into the tick&#039;s salivary glands, thereby allowing it to enter the host through the bite. This is evidenced by the fact that patients with Lyme disease have been found to not possess OspA antibodies in the early stages of the disease.&amp;lt;/span&amp;gt;&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt; OspA is the protein most related to acute Lyme neuroborreliosis (LNB), the neurological manifestations of Lyme disease.  &lt;br /&gt;
&lt;br /&gt;
     &amp;lt;SPAN STYLE=&amp;quot;background:yellow&amp;quot;&amp;gt;&amp;lt;b&amp;gt;We mention &amp;quot;two&amp;quot; proteins involved in Lyme Disease and just &#039;name&#039; OspB but we don&#039;t even have a sentence or two about it in this part?&amp;lt;/b&amp;gt;&amp;lt;/span&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;Once inside the host, the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; has a great number of mechanisms available to actively suppress the host&#039;s immune system response and neutralize its effector mechanisms, such as the expression of another outer surface protein, OspC, which prevents susceptibility to the host&#039;s [http://en.wikipedia.org/wiki/Innate_immune_system innate immunity] and [http://en.wikipedia.org/wiki/Complement_system complement systems]. Additionally, &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; is capable of suppressing many of its surface proteins to reduce its detectability, but can also utilize protective means by temporarily expressing them when needed.&amp;lt;/span&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;OspA &amp;amp; Lyme Disease&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Acute Lyme Neuroborreliosis (LNB) is part of the second stage of Lyme disease in which the spirochete invades the peripheral and central nervous systems (CNS). Symptoms of LNB include: Bannwarth’s Syndrome, Lymphocytic Meningitis, and [http://www.rightdiagnosis.com/sym/cranial_neuritis.htm Cranial] and [http://www.ncbi.nlm.nih.gov/pubmedhealth/PMH0001619/ Peripheral Neuritis]. &amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;The presence of OspA in the cerebrospinal fluid (CSF) is responsible for this complex inflammatory response in the brain that leads to the neuroborreliosis.&amp;lt;/span&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
[[Image:G2L03-OspA-mechanism.jpg|thumb|300px|Mechanism of the host inflammatory response to OspA]]&lt;br /&gt;
&lt;br /&gt;
&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;There are six steps involved in the host&#039;s inflammatory response to OspA:&amp;lt;/span&amp;gt; &amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt;&amp;lt;br&amp;gt;&lt;br /&gt;
&amp;lt;ol&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;When the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; enter the host’s CNS they encounter several different types of immune cells such as [http://en.wikipedia.org/wiki/Monocyte monocytes], [http://en.wikipedia.org/wiki/Macrophages macrophages], and [http://en.wikipedia.org/wiki/Dendritic_cells dendritic cells]. While in the CSF, outer surface protein A (OspA) is upregulated and it’s increased expression promotes recognition by a specific receptor on a monocyte.&amp;lt;/span&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;The OspA-bound monocyte then releases proinflammatory [http://en.wikipedia.org/wiki/Cytokine cytokines] (i.e. [http://en.wikipedia.org/wiki/Interferon interferon]), as well as [http://en.wikipedia.org/wiki/Chemokine chemokines], such as [http://en.wikipedia.org/wiki/CXCL13 CXCL13]. In patients with LNB, there is an observed increase in the levels of these cytokines and chemokines in their CSF. The production of chemokines leads to the recruitment of other immune cells to the site of infection.&amp;lt;/span&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;[http://en.wikipedia.org/wiki/B_lymphocyte B-lymphocytes] respond to the new concentration gradient of CXCL13 between the blood and CSF and migrate into the CSF.&amp;lt;/span&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;B-lymphocytes undergo [http://en.wikipedia.org/wiki/Receptor-mediated_endocytosis receptor-mediated endocytosis], consuming the OspA antigens present in the CSF, thereby triggering its activation. The B-lymphocytes then are able to differentiate and mature into  [http://en.wikipedia.org/wiki/Plasma_cells plasma cells].&amp;lt;/span&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;The plasma cells create large quantities of anti-OspA antibodies specific to this strain of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; and release them into the CSF.&amp;lt;/span&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;The anti-OspA antibodies will then bind to the OspA on the spirochete’s membrane, thus killing the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt;.&amp;lt;/span&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
&amp;lt;/ol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;This process is two-sided in the sense that the OspA aids in the pathogenesis of new symptoms (neuroborreliosis) through the chemokine’s actions, as well as initiating the signaling cascade to destroy itself.&amp;lt;/span&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h3&amp;gt;Other Speculations about OspA&#039;s role in Lyme Disease&amp;lt;/h3&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Borrelia have been shown to adhere to murine neural and glial cell lines using OspA. This adherence can be cytotoxic, due to OspA inducing apopotosis and astrogliosis.The borrelia spirochete is able to hide in certain areas of the body, specifically the extracellular matrix. This helps the spirochete survive by hiding from leukocytes circulating in the bloodstream. It is speculated that because OspA can also rapidly bind to plasminogen, and the plasminogen becomes activated plasmin that can degrade the extracellular matrix, borrelia could be using this to help invade the extracellular matrix. However there are also other possible explanations that do not involve OspA. Borrelia lead to local upregulation of the matrix metalloproteinase-9, which caues the digestion of the surrounding extracellular matrix.&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;OspA Vaccination&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Risk of developing Lyme disease can be &amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;mitigated&amp;lt;/span&amp;gt; by staying clear of areas with populations of ticks, wearing proper attire &amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;to minimize easily bitten areas of the body&amp;lt;/span&amp;gt;, and using &amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;insect repellents containing&amp;lt;/span&amp;gt; [http://en.wikipedia.org/wiki/DEET DEET] (N,N-diethy-m-toluamide). However, &amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;another effective means for prevention could be possible&amp;lt;/span&amp;gt; by using an outer surface protein from &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; &amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;in the creation of&amp;lt;/span&amp;gt; a vaccine.&amp;lt;ref name=&amp;quot;nigrovic&amp;quot;&amp;gt;PMID: 16893489&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;The membrane composition of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; is abundant in both OspA and OspB, and the two proteins share a 53% similarity in their primary sequences. Both OspA and OspB are expressed in the tick&#039;s gut and downregulated during feeding and aid in its survivability; however, OspA is overall less varied and reactive than OspB, which has greater variability.&amp;lt;ref name=&amp;quot;becker&amp;quot;&amp;gt;PMID: 15713683&amp;lt;/ref&amp;gt; The relatively conserved sequence of OspA thus lends itself better to study and application toward the development of a vaccine for a broader range of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; strains in the treatment of Lyme disease than that of OspB. The first vaccine used a purified recombinant form of OspA and functioned in blocking transmission of the spirochetes expressing OspA from tick to host during feeding, killing them while still attached to the tick&#039;s gut.&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;battisti&amp;quot;&amp;gt;PMID: 18779341&amp;lt;/ref&amp;gt; The vaccine, Lymerix, had shown 76% and 92% effectiveness in separate clinical trials in which patients were treated for two years following a three-dose schedule. However, the vaccination was suspended from use in 2002 when opponents claimed the [http://en.wikipedia.org/wiki/Immunoglobulin_G IgG antibodies] for OspA were associated with the onset of severe chronic arthritis, as well as other side effects affecting immunity.&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;plotkin&amp;quot;&amp;gt;PMID: 21217175&amp;lt;/ref&amp;gt;  This fact, in conjunction with the desire for a more widespread vaccine treating multiple strains of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt;, has spurred research towards a new vaccine.&lt;br /&gt;
&amp;lt;/span&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/span&amp;gt;&lt;br /&gt;
To address this problem of international protection it would be helpful to create a chimera, mixing the OspA of different species. In order to do this the epitope of OspA should be studied. LA-2 &amp;lt;&amp;lt;SHOW FAB HIGHLIGHTED ON 1FJ1&amp;gt;&amp;gt; is a murine monoclonal antibody that binds strongly &amp;lt;&amp;lt;SHOW INTERACTION HIGHLIGHTED (ZOOMED IN) ON 1FJ1&amp;gt;&amp;gt; to OspA &amp;lt;&amp;lt;SHOW OSPA HIGHLIGHTED ON 1FJ1&amp;gt;&amp;gt;, and how effective a vaccine is correlated with LA-2 binding. 5&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;Structure of OspA&amp;lt;/h2&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;Structure load=&amp;quot;1fj1&amp;quot; size=&amp;quot;350&amp;quot; frame=&amp;quot;true&amp;quot; align=&amp;quot;right&amp;quot; name=&amp;quot;OspA-manip&amp;quot; caption=&amp;quot;Outer surface protein A (OspA) ([[1fj1|1FJ1]], chain F)&amp;quot; scene=&amp;quot;Studio:G2SecL03/Ospa_3loopscartoon/3&amp;quot;/&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
OspA is made up of 273 residues over 21 anti-parallel β-sheets and a single α-helix. It&#039;s folded conformation is divided into three main sections: a N-terminus &amp;quot;sandwich,&amp;quot; a central region comprising of several β-sheets and a C-terminus &amp;quot;barrel&amp;quot; domain.&amp;lt;ref name=&amp;quot;ding&amp;quot;&amp;gt;PMID: 11183781&amp;lt;/ref&amp;gt; The folded regions at its ends connected by a single β-sheet layer in the middle gives the unique appearance of a dumbbell shape.&amp;lt;ref name=&amp;quot;makabe&amp;quot;&amp;gt;PMID: 16823038&amp;lt;/ref&amp;gt; &lt;br /&gt;
&lt;br /&gt;
There are &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops/4&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;three loops&amp;lt;/scene&amp;gt; at the C-terminus of OspA that are important in binding with the LA-2 Fab antibody, whose interactions provide great insight into vaccine research and effectiveness. Within these loops, there are &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-nor/3&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;three residues&amp;lt;/scene&amp;gt; &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-r/2&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;(show residue R-groups)&amp;lt;/scene&amp;gt; where there is distinct variation between the different strains of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; and serve as potential targets for the creation of a broader vaccine.&amp;lt;ref name=&amp;quot;ding&amp;quot;&amp;gt;PMID: 11183781&amp;lt;/ref&amp;gt; &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops3res/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;(display both the three loops and three residues together)&amp;lt;/scene&amp;gt; &lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Loop 1 &amp;lt;&amp;lt;LOOP 1&amp;gt;&amp;gt;, residues 206 and 216, has an important role in binding due to a large exposed surface area, high mobility. Loop 2 &amp;lt;&amp;lt;LOOP 2&amp;gt;&amp;gt;, residues 224-233, and Loop 3 &amp;lt;&amp;lt;LOOP 3&amp;gt;&amp;gt;, residues 246-257, are also areas that are involved in binding. LA-2 recognizes OspA Bb, but does not recognize OspA from Bg.and Ba. Between Bb. and Ba. genetic sequences are generally invariant, but two residues change between the species, ALA 208 &amp;lt;&amp;lt;ALA 208&amp;gt;&amp;gt; in Bb. is GLN in Ba., and ASN 251 &amp;lt;&amp;lt;ASN 251&amp;gt;&amp;gt; in Bb. is ALA in Ba.. Bg. has more variation and in addition to the previous two differences, has at least one more difference, where ALA 215 &amp;lt;&amp;lt;ALA 215&amp;gt;&amp;gt; in Bb. is LYS, Bg. sometimes also has a deletion at Bb.’s ALA 208. LA-2 and OspA of Bb. form a tight interface when binding, and the longer GLN sidechain found in Ba. and Bg. is more difficult to accommodate, causing less binding. A chimera that was weakly recognized by LA-2 was made with parts of loop 1 from Bb., and loops 2 and 3 from Bg. 5 Recently, a different kind of chimera has been made which combined the proximal region of Bb. and distal region of Ba., and was able to successfully protect mice from both species. 8&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h3&amp;gt;Reference List of Available Scenes for OspA&amp;lt;/h3&amp;gt;&lt;br /&gt;
&amp;lt;ul&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa_3loopscartoon/3&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Reset model&amp;lt;/scene&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops/4&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Three loops&amp;lt;/scene&amp;gt; in C-terminus (close up)&amp;lt;/li&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-nor/3&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Three residues&amp;lt;/scene&amp;gt; in C-terminus (Ala208, Ala215 and Asn251 in &amp;lt;i&amp;gt;B. burgdorferi&amp;lt;/i&amp;gt;, also hides R-groups)&lt;br /&gt;
         &amp;lt;ul&amp;gt;&lt;br /&gt;
           &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-r/2&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Display R-groups&amp;lt;/scene&amp;gt; of Ala208, Ala215 and Asn251&amp;lt;/li&amp;gt;&lt;br /&gt;
         &amp;lt;/ul&amp;gt;&lt;br /&gt;
     &amp;lt;/li&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops3res/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Three loops and all three residues (with R-groups included)&amp;lt;/scene&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
&amp;lt;/ul&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;References&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;references /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;External Links&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;ul&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://www.who.int/ith/diseases/lyme/en/index.html World Health Organization: Lyme Disease]&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://www.ncbi.nlm.nih.gov/pubmedhealth/PMH0002296/ PubMed Health: Lyme Disease]&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://www.aldf.com/ American Lyme Disease Foundation]&lt;br /&gt;
&amp;lt;/ul&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;Proteopedia Page Contributors and Editors&amp;lt;/h2&amp;gt;&lt;br /&gt;
[http://proteopedia.org/wiki/index.php/User:Kimberly_Slade Kimberly Slade], [http://proteopedia.org/wiki/index.php/User:Cara_Lin Cara Lin], [http://proteopedia.org/wiki/index.php/User:Andrea_Mullen Andrea Mullen], [http://proteopedia.org/wiki/index.php/User:Jenny_Kim_Kim Jenny Kim Kim]&lt;br /&gt;
&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&lt;/div&gt;</summary>
		<author><name>Jenny Kim Kim</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=User:Marvin_O%27Neal/OspA&amp;diff=1384311</id>
		<title>User:Marvin O&#039;Neal/OspA</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=User:Marvin_O%27Neal/OspA&amp;diff=1384311"/>
		<updated>2012-05-02T13:00:03Z</updated>

		<summary type="html">&lt;p&gt;Jenny Kim Kim: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;Structure load=&amp;quot;1fj1&amp;quot; size=&amp;quot;350&amp;quot; frame=&amp;quot;true&amp;quot; align=&amp;quot;right&amp;quot; name=&amp;quot;OspA-secondary&amp;quot; caption=&amp;quot;Outer surface protein A (OspA) ([[1fj1|1FJ1]], chain F) showing secondary structures.&amp;quot; scene=&amp;quot;Studio:G2SecL03/Ospa_default/5&amp;quot;/&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
&amp;lt;b&amp;gt;Outer Surface Protein A (OspA)&amp;lt;/b&amp;gt; &amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;is a major lipoprotein found on the surface of [http://en.wikipedia.org/wiki/Spirochaete spirochetes] from the genus [http://en.wikipedia.org/wiki/Borrelia &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt;] and is comprised of 21 anti-parallel β-sheets and a single α-helix. OspA&#039;s expression is regulated at different points in time, from being downregulated during the tick&#039;s feeding process on its host to being upregulated in the host&#039;s cerebrospinal fluid (CSF) to induce inflammatory response, resulting in acute Lyme [http://en.wikipedia.org/wiki/Neuroborreliosis neuroborreliosis]. OspA has also been used as a vector in working towards the development of a vaccine for [http://en.wikipedia.org/wiki/Lyme_disease Lyme disease].&amp;lt;/span&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;b&amp;gt;&amp;lt;SPAN STYLE=&amp;quot;color:red&amp;quot;&amp;gt;NOTE: Red text indicates changes/additions I&#039;ve made and&amp;lt;/span&amp;gt; &amp;lt;SPAN STYLE=&amp;quot;color:black; background:yellow&amp;quot;&amp;gt;this style&amp;lt;/span&amp;gt; &amp;lt;SPAN STYLE=&amp;quot;color:red&amp;quot;&amp;gt;is pertinent thoughts/questions we should consider/address. All of this will be cleaned up for the final submitted page. ~Kim&amp;lt;/span&amp;gt;&amp;lt;/b&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;Introduction&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Lyme disease is caused by the spirochete &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; and spread via hard-bodied ticks belonging to the family [http://en.wikipedia.org/wiki/Ixodidae &amp;lt;i&amp;gt;Ixodidae&amp;lt;/i&amp;gt;]. The &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; spirochetes are motile, helical organisms &amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;have several lipoproteins exposed on the surfaces of their membranes that invoke a response from host immune systems. The predominant group of these is classified as the outer surface proteins (Osps). Both the pathogenesis of Lyme disease as well as the host&#039;s immune response stem from the effects of the spirochete&#039;s presence and involvement in the system.&amp;lt;/span&amp;gt;&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
The major strain of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; in the United States is [http://en.wikipedia.org/wiki/Borrelia_burgdorferi &amp;lt;i&amp;gt;Borrelia burgdorferi&amp;lt;/i&amp;gt;] &amp;lt;i&amp;gt;sensu stricto (Bb.)&amp;lt;/i&amp;gt;, with 20-100 cases of Lyme disease being reported per 100,000 people. In Europe, Lyme disease cases are more prevalent, with 100-130 diagnoses per 100,000 people, but are caused by the spirochetes [http://en.wikipedia.org/wiki/Borrelia_afzelii &amp;lt;i&amp;gt;Borrelia afzelii (Ba.)&amp;lt;/i&amp;gt;] and [http://en.wikipedia.org/wiki/Borrelia_garinii &amp;lt;i&amp;gt;Borrelia garinii (Bg.)&amp;lt;/i&amp;gt;] in addition to &amp;lt;i&amp;gt;B. burgdorferi&amp;lt;/i&amp;gt;.&amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;ding&amp;quot;&amp;gt;PMID: 11183781&amp;lt;/ref&amp;gt; &lt;br /&gt;
&lt;br /&gt;
     &amp;lt;SPAN STYLE=&amp;quot;background:yellow&amp;quot;&amp;gt;&amp;lt;b&amp;gt;Do we want to mention the number of Borrelia strains but the fact that there are only 4 which are infectious to humans? - need a reference though&amp;lt;/b&amp;gt;&amp;lt;/span&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Lyme disease is a debilitating condition that begins with a characteristic bullseye rash known as an [http://en.wikipedia.org/wiki/Erythema_chronicum_migrans erythema migrans (EM)] as well as &amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;the development of lesions on other parts of the body, not just at the site of the tick&#039;s attachment to its host&amp;lt;/span&amp;gt;. Secondary stage symptoms include affecting the heart, joints, and both the central and peripheral nervous systems. &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; has two major outer surface lipoproteins that are involved in Lyme disease: OspA and OspB. OspA is used in adhering to the tick&#039;s gut by binding with the tick receptor (TROSPA) &lt;br /&gt;
&lt;br /&gt;
     &amp;lt;SPAN STYLE=&amp;quot;background:yellow&amp;quot;&amp;gt;&amp;lt;b&amp;gt;Think a blurb about this would be useful- there isn&#039;t a wiki page for easy reference&amp;lt;/b&amp;gt;&amp;lt;/span&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;During feeding, OspA is downregulated in order to evade an immune response from the incoming host blood into the gut, releasing the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; from the gut wall and migrating into the tick&#039;s salivary glands, thereby allowing it to enter the host through the bite. This is evidenced by the fact that patients with Lyme disease have been found to not possess OspA antibodies in the early stages of the disease.&amp;lt;/span&amp;gt;&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt; OspA is the protein most related to acute Lyme neuroborreliosis (LNB), the neurological manifestations of Lyme disease.  &lt;br /&gt;
&lt;br /&gt;
     &amp;lt;SPAN STYLE=&amp;quot;background:yellow&amp;quot;&amp;gt;&amp;lt;b&amp;gt;We mention &amp;quot;two&amp;quot; proteins involved in Lyme Disease and just &#039;name&#039; OspB but we don&#039;t even have a sentence or two about it in this part?&amp;lt;/b&amp;gt;&amp;lt;/span&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;Once inside the host, the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; has a great number of mechanisms available to actively suppress the host&#039;s immune system response and neutralize its effector mechanisms, such as the expression of another outer surface protein, OspC, which prevents susceptibility to the host&#039;s [http://en.wikipedia.org/wiki/Innate_immune_system innate immunity] and [http://en.wikipedia.org/wiki/Complement_system complement systems]. Additionally, &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; is capable of suppressing many of its surface proteins to reduce its detectability, but can also utilize protective means by temporarily expressing them when needed.&amp;lt;/span&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;OspA &amp;amp; Lyme Disease&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Acute Lyme Neuroborreliosis (LNB) is part of the second stage of Lyme disease in which the spirochete invades the peripheral and central nervous systems (CNS). Symptoms of LNB include: Bannwarth’s Syndrome, Lymphocytic Meningitis, and [http://www.rightdiagnosis.com/sym/cranial_neuritis.htm Cranial] and [http://www.ncbi.nlm.nih.gov/pubmedhealth/PMH0001619/ Peripheral Neuritis]. &amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;The presence of OspA in the cerebrospinal fluid (CSF) is responsible for this complex inflammatory response in the brain that leads to the neuroborreliosis.&amp;lt;/span&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
[[Image:G2L03-OspA-mechanism.jpg|thumb|300px|Mechanism of the host inflammatory response to OspA]]&lt;br /&gt;
&lt;br /&gt;
&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;There are six steps involved in the host&#039;s inflammatory response to OspA:&amp;lt;/span&amp;gt; &amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt;&amp;lt;br&amp;gt;&lt;br /&gt;
&amp;lt;ol&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;When the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; enter the host’s CNS they encounter several different types of immune cells such as [http://en.wikipedia.org/wiki/Monocyte monocytes], [http://en.wikipedia.org/wiki/Macrophages macrophages], and [http://en.wikipedia.org/wiki/Dendritic_cells dendritic cells]. While in the CSF, outer surface protein A (OspA) is upregulated and it’s increased expression promotes recognition by a specific receptor on a monocyte.&amp;lt;/span&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;The OspA-bound monocyte then releases proinflammatory [http://en.wikipedia.org/wiki/Cytokine cytokines] (i.e. [http://en.wikipedia.org/wiki/Interferon interferon]), as well as [http://en.wikipedia.org/wiki/Chemokine chemokines], such as [http://en.wikipedia.org/wiki/CXCL13 CXCL13]. In patients with LNB, there is an observed increase in the levels of these cytokines and chemokines in their CSF. The production of chemokines leads to the recruitment of other immune cells to the site of infection.&amp;lt;/span&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;[http://en.wikipedia.org/wiki/B_lymphocyte B-lymphocytes] respond to the new concentration gradient of CXCL13 between the blood and CSF and migrate into the CSF.&amp;lt;/span&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;B-lymphocytes undergo [http://en.wikipedia.org/wiki/Receptor-mediated_endocytosis receptor-mediated endocytosis], consuming the OspA antigens present in the CSF, thereby triggering its activation. The B-lymphocytes then are able to differentiate and mature into  [http://en.wikipedia.org/wiki/Plasma_cells plasma cells].&amp;lt;/span&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;The plasma cells create large quantities of anti-OspA antibodies specific to this strain of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; and release them into the CSF.&amp;lt;/span&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;The anti-OspA antibodies will then bind to the OspA on the spirochete’s membrane, thus killing the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt;.&amp;lt;/span&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
&amp;lt;/ol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;This process is two-sided in the sense that the OspA aids in the pathogenesis of new symptoms (neuroborreliosis) through the chemokine’s actions, as well as initiating the signaling cascade to destroy itself.&amp;lt;/span&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;OspA Vaccination&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Risk of developing Lyme disease can be &amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;mitigated&amp;lt;/span&amp;gt; by staying clear of areas with populations of ticks, wearing proper attire &amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;to minimize easily bitten areas of the body&amp;lt;/span&amp;gt;, and using &amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;insect repellents containing&amp;lt;/span&amp;gt; [http://en.wikipedia.org/wiki/DEET DEET] (N,N-diethy-m-toluamide). However, &amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;another effective means for prevention could be possible&amp;lt;/span&amp;gt; by using an outer surface protein from &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; &amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;in the creation of&amp;lt;/span&amp;gt; a vaccine.&amp;lt;ref name=&amp;quot;nigrovic&amp;quot;&amp;gt;PMID: 16893489&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;The membrane composition of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; is abundant in both OspA and OspB, and the two proteins share a 53% similarity in their primary sequences. Both OspA and OspB are expressed in the tick&#039;s gut and downregulated during feeding and aid in its survivability; however, OspA is overall less varied and reactive than OspB, which has greater variability.&amp;lt;ref name=&amp;quot;becker&amp;quot;&amp;gt;PMID: 15713683&amp;lt;/ref&amp;gt; The relatively conserved sequence of OspA thus lends itself better to study and application toward the development of a vaccine for a broader range of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; strains in the treatment of Lyme disease than that of OspB. The first vaccine used a purified recombinant form of OspA and functioned in blocking transmission of the spirochetes expressing OspA from tick to host during feeding, killing them while still attached to the tick&#039;s gut.&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;battisti&amp;quot;&amp;gt;PMID: 18779341&amp;lt;/ref&amp;gt; The vaccine, Lymerix, had shown 76% and 92% effectiveness in separate clinical trials in which patients were treated for two years following a three-dose schedule. However, the vaccination was suspended from use in 2002 when opponents claimed the [http://en.wikipedia.org/wiki/Immunoglobulin_G IgG antibodies] for OspA were associated with the onset of severe chronic arthritis, as well as other side effects affecting immunity.&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;plotkin&amp;quot;&amp;gt;PMID: 21217175&amp;lt;/ref&amp;gt;  This fact, in conjunction with the desire for a more widespread vaccine treating multiple strains of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt;, has spurred research towards a new vaccine.&lt;br /&gt;
&amp;lt;/span&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/span&amp;gt;&lt;br /&gt;
To address this problem of international protection it would be helpful to create a chimera, mixing the OspA of different species. In order to do this the epitope of OspA should be studied. LA-2 &amp;lt;&amp;lt;SHOW FAB HIGHLIGHTED ON 1FJ1&amp;gt;&amp;gt; is a murine monoclonal antibody that binds strongly &amp;lt;&amp;lt;SHOW INTERACTION HIGHLIGHTED (ZOOMED IN) ON 1FJ1&amp;gt;&amp;gt; to OspA &amp;lt;&amp;lt;SHOW OSPA HIGHLIGHTED ON 1FJ1&amp;gt;&amp;gt;, and how effective a vaccine is correlated with LA-2 binding. 5&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;Structure of OspA&amp;lt;/h2&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;Structure load=&amp;quot;1fj1&amp;quot; size=&amp;quot;350&amp;quot; frame=&amp;quot;true&amp;quot; align=&amp;quot;right&amp;quot; name=&amp;quot;OspA-manip&amp;quot; caption=&amp;quot;Outer surface protein A (OspA) ([[1fj1|1FJ1]], chain F)&amp;quot; scene=&amp;quot;Studio:G2SecL03/Ospa_3loopscartoon/3&amp;quot;/&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
OspA is made up of 273 residues over 21 anti-parallel β-sheets and a single α-helix. It&#039;s folded conformation is divided into three main sections: a N-terminus &amp;quot;sandwich,&amp;quot; a central region comprising of several β-sheets and a C-terminus &amp;quot;barrel&amp;quot; domain.&amp;lt;ref name=&amp;quot;ding&amp;quot;&amp;gt;PMID: 11183781&amp;lt;/ref&amp;gt; The folded regions at its ends connected by a single β-sheet layer in the middle gives the unique appearance of a dumbbell shape.&amp;lt;ref name=&amp;quot;makabe&amp;quot;&amp;gt;PMID: 16823038&amp;lt;/ref&amp;gt; &lt;br /&gt;
&lt;br /&gt;
There are &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops/4&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;three loops&amp;lt;/scene&amp;gt; at the C-terminus of OspA that are important in binding with the LA-2 Fab antibody, whose interactions provide great insight into vaccine research and effectiveness. Within these loops, there are &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-nor/3&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;three residues&amp;lt;/scene&amp;gt; &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-r/2&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;(show residue R-groups)&amp;lt;/scene&amp;gt; where there is distinct variation between the different strains of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; and serve as potential targets for the creation of a broader vaccine.&amp;lt;ref name=&amp;quot;ding&amp;quot;&amp;gt;PMID: 11183781&amp;lt;/ref&amp;gt; &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops3res/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;(display both the three loops and three residues together)&amp;lt;/scene&amp;gt; &lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Loop 1 &amp;lt;&amp;lt;LOOP 1&amp;gt;&amp;gt;, residues 206 and 216, has an important role in binding due to a large exposed surface area, high mobility. Loop 2 &amp;lt;&amp;lt;LOOP 2&amp;gt;&amp;gt;, residues 224-233, and Loop 3 &amp;lt;&amp;lt;LOOP 3&amp;gt;&amp;gt;, residues 246-257, are also areas that are involved in binding. LA-2 recognizes OspA Bb, but does not recognize OspA from Bg.and Ba. Between Bb. and Ba. genetic sequences are generally invariant, but two residues change between the species, ALA 208 &amp;lt;&amp;lt;ALA 208&amp;gt;&amp;gt; in Bb. is GLN in Ba., and ASN 251 &amp;lt;&amp;lt;ASN 251&amp;gt;&amp;gt; in Bb. is ALA in Ba.. Bg. has more variation and in addition to the previous two differences, has at least one more difference, where ALA 215 &amp;lt;&amp;lt;ALA 215&amp;gt;&amp;gt; in Bb. is LYS, Bg. sometimes also has a deletion at Bb.’s ALA 208. LA-2 and OspA of Bb. form a tight interface when binding, and the longer GLN sidechain found in Ba. and Bg. is more difficult to accommodate, causing less binding. A chimera that was weakly recognized by LA-2 was made with parts of loop 1 from Bb., and loops 2 and 3 from Bg. 5 Recently, a different kind of chimera has been made which combined the proximal region of Bb. and distal region of Ba., and was able to successfully protect mice from both species. 8&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h3&amp;gt;Reference List of Available Scenes for OspA&amp;lt;/h3&amp;gt;&lt;br /&gt;
&amp;lt;ul&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa_3loopscartoon/3&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Reset model&amp;lt;/scene&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops/4&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Three loops&amp;lt;/scene&amp;gt; in C-terminus (close up)&amp;lt;/li&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-nor/3&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Three residues&amp;lt;/scene&amp;gt; in C-terminus (Ala208, Ala215 and Asn251 in &amp;lt;i&amp;gt;B. burgdorferi&amp;lt;/i&amp;gt;, also hides R-groups)&lt;br /&gt;
         &amp;lt;ul&amp;gt;&lt;br /&gt;
           &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-r/2&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Display R-groups&amp;lt;/scene&amp;gt; of Ala208, Ala215 and Asn251&amp;lt;/li&amp;gt;&lt;br /&gt;
         &amp;lt;/ul&amp;gt;&lt;br /&gt;
     &amp;lt;/li&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops3res/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Three loops and all three residues (with R-groups included)&amp;lt;/scene&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
&amp;lt;/ul&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;References&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;references /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;External Links&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;ul&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://www.who.int/ith/diseases/lyme/en/index.html World Health Organization: Lyme Disease]&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://www.ncbi.nlm.nih.gov/pubmedhealth/PMH0002296/ PubMed Health: Lyme Disease]&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://www.aldf.com/ American Lyme Disease Foundation]&lt;br /&gt;
&amp;lt;/ul&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;Proteopedia Page Contributors and Editors&amp;lt;/h2&amp;gt;&lt;br /&gt;
[http://proteopedia.org/wiki/index.php/User:Kimberly_Slade Kimberly Slade], [http://proteopedia.org/wiki/index.php/User:Cara_Lin Cara Lin], [http://proteopedia.org/wiki/index.php/User:Andrea_Mullen Andrea Mullen], [http://proteopedia.org/wiki/index.php/User:Jenny_Kim_Kim Jenny Kim Kim]&lt;br /&gt;
&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&lt;/div&gt;</summary>
		<author><name>Jenny Kim Kim</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=User:Marvin_O%27Neal/OspA&amp;diff=1384295</id>
		<title>User:Marvin O&#039;Neal/OspA</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=User:Marvin_O%27Neal/OspA&amp;diff=1384295"/>
		<updated>2012-05-02T11:55:37Z</updated>

		<summary type="html">&lt;p&gt;Jenny Kim Kim: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;Structure load=&amp;quot;1fj1&amp;quot; size=&amp;quot;350&amp;quot; frame=&amp;quot;true&amp;quot; align=&amp;quot;right&amp;quot; name=&amp;quot;OspA-secondary&amp;quot; caption=&amp;quot;Outer surface protein A (OspA) ([[1fj1|1FJ1]], chain F) showing secondary structures.&amp;quot; scene=&amp;quot;Studio:G2SecL03/Ospa_default/5&amp;quot;/&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
&amp;lt;b&amp;gt;Outer Surface Protein A (OspA)&amp;lt;/b&amp;gt; &amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;is a major lipoprotein found on the surface of [http://en.wikipedia.org/wiki/Spirochaete spirochetes] from the genus [http://en.wikipedia.org/wiki/Borrelia &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt;] and is comprised of 21 anti-parallel β-strands and a single α-helix. OspA&#039;s expression is regulated at different points in time, from being downregulated during the tick&#039;s feeding process on its host to being upregulated in the host&#039;s cerebrospinal fluid (CSF) to induce inflammatory response, resulting in acute Lyme [http://en.wikipedia.org/wiki/Neuroborreliosis neuroborreliosis]. OspA has also been used as a vector in working towards the development of a vaccine for [http://en.wikipedia.org/wiki/Lyme_disease Lyme disease].&amp;lt;/span&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;b&amp;gt;&amp;lt;SPAN STYLE=&amp;quot;color:red&amp;quot;&amp;gt;NOTE: Red text indicates changes/additions I&#039;ve made and&amp;lt;/span&amp;gt; &amp;lt;SPAN STYLE=&amp;quot;color:black; background:yellow&amp;quot;&amp;gt;this style&amp;lt;/span&amp;gt; &amp;lt;SPAN STYLE=&amp;quot;color:red&amp;quot;&amp;gt;is pertinent thoughts/questions we should consider/address. All of this will be cleaned up for the final submitted page. ~Kim&amp;lt;/span&amp;gt;&amp;lt;/b&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;Introduction&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Lyme disease is caused by the spirochete &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; and spread via hard-bodied ticks belonging to the family [http://en.wikipedia.org/wiki/Ixodidae &amp;lt;i&amp;gt;Ixodidae&amp;lt;/i&amp;gt;]. The &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; spirochetes are motile, helical organisms &amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;have several lipoproteins exposed on the surfaces of their membranes that invoke a response from host immune systems. The predominant group of these is classified as the outer surface proteins (Osps). Both the pathogenesis of Lyme disease as well as the host&#039;s immune response stem from the effects of the spirochete&#039;s presence and involvement in the system.&amp;lt;/span&amp;gt;&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
The major strain of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; in the United States is [http://en.wikipedia.org/wiki/Borrelia_burgdorferi &amp;lt;i&amp;gt;Borrelia burgdorferi&amp;lt;/i&amp;gt;] &amp;lt;i&amp;gt;sensu stricto (Bb.)&amp;lt;/i&amp;gt;, with 20-100 cases of Lyme disease being reported per 100,000 people. In Europe, Lyme disease cases are more prevalent, with 100-130 diagnoses per 100,000 people, but are caused by the spirochetes [http://en.wikipedia.org/wiki/Borrelia_afzelii &amp;lt;i&amp;gt;Borrelia afzelii (Ba.)&amp;lt;/i&amp;gt;] and [http://en.wikipedia.org/wiki/Borrelia_garinii &amp;lt;i&amp;gt;Borrelia garinii (Bg.)&amp;lt;/i&amp;gt;] in addition to &amp;lt;i&amp;gt;B. burgdorferi&amp;lt;/i&amp;gt;.&amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;ding&amp;quot;&amp;gt;PMID: 11183781&amp;lt;/ref&amp;gt; &lt;br /&gt;
&lt;br /&gt;
     &amp;lt;SPAN STYLE=&amp;quot;background:yellow&amp;quot;&amp;gt;&amp;lt;b&amp;gt;Do we want to mention the number of Borrelia strains but the fact that there are only 4 which are infectious to humans? - need a reference though&amp;lt;/b&amp;gt;&amp;lt;/span&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Lyme disease is a debilitating condition that begins with a characteristic bullseye rash known as an [http://en.wikipedia.org/wiki/Erythema_chronicum_migrans erythema migrans (EM)] as well as &amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;the development of lesions on other parts of the body, not just at the site of the tick&#039;s attachment to its host&amp;lt;/span&amp;gt;. Secondary stage symptoms include affecting the heart, joints, and both the central and peripheral nervous systems. &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; have two major outer surface lipoproteins that are involved in Lyme disease: OspA and OspB. OspA is used in adhering to the tick&#039;s gut by binding with the tick receptor (TROSPA) &lt;br /&gt;
&lt;br /&gt;
     &amp;lt;SPAN STYLE=&amp;quot;background:yellow&amp;quot;&amp;gt;&amp;lt;b&amp;gt;Think a blurb about this would be useful- there isn&#039;t a wiki page for easy reference&amp;lt;/b&amp;gt;&amp;lt;/span&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;During feeding, OspA is downregulated in order to evade an immune response from the incoming host blood into the gut, releasing the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; from the gut wall and migrating into the tick&#039;s salivary glands, thereby allowing it to enter the host through the bite. This is evidenced by the fact that patients with Lyme disease have been found to not possess OspA antibodies in the early stages of the disease.&amp;lt;/span&amp;gt;&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt; OspA is the protein most related to acute Lyme neuroborreliosis (LNB), the neurological manifestations of Lyme disease.  &lt;br /&gt;
&lt;br /&gt;
     &amp;lt;SPAN STYLE=&amp;quot;background:yellow&amp;quot;&amp;gt;&amp;lt;b&amp;gt;We mention &amp;quot;two&amp;quot; proteins involved in Lyme Disease and just &#039;name&#039; OspB but we don&#039;t even have a sentence or two about it in this part?&amp;lt;/b&amp;gt;&amp;lt;/span&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;Once inside the host, the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; has a great number of mechanisms available to actively suppress the host&#039;s immune system response and neutralize its effector mechanisms, such as the expression of another outer surface protein, OspC, which prevents susceptibility to the host&#039;s [http://en.wikipedia.org/wiki/Innate_immune_system innate immunity] and [http://en.wikipedia.org/wiki/Complement_system complement systems]. Additionally, &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; is capable of suppressing many of its surface proteins to reduce its detectability, but can also utilize protective means by temporarily expressing them when needed.&amp;lt;/span&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;OspA &amp;amp; Lyme Disease&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Acute Lyme Neuroborreliosis (LNB) is part of the second stage of Lyme disease in which the spirochete invades the peripheral and central nervous systems (CNS). Symptoms of LNB include: Bannwarth’s Syndrome, Lymphocytic Meningitis, and [http://www.rightdiagnosis.com/sym/cranial_neuritis.htm Cranial] and [http://www.ncbi.nlm.nih.gov/pubmedhealth/PMH0001619/ Peripheral Neuritis]. &amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;The presence of OspA in the cerebrospinal fluid (CSF) is responsible for this complex inflammatory response in the brain that leads to the neuroborreliosis.&amp;lt;/span&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
[[Image:G2L03-OspA-mechanism.jpg|thumb|300px|Mechanism of the host inflammatory response to OspA]]&lt;br /&gt;
&lt;br /&gt;
&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;There are six steps involved in the host&#039;s inflammatory response to OspA:&amp;lt;/span&amp;gt; &amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt;&amp;lt;br&amp;gt;&lt;br /&gt;
&amp;lt;ol&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;When the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; enter the host’s CNS they encounter several different types of immune cells such as [http://en.wikipedia.org/wiki/Monocyte monocytes], [http://en.wikipedia.org/wiki/Macrophages macrophages], and [http://en.wikipedia.org/wiki/Dendritic_cells dendritic cells]. While in the CSF, outer surface protein A (OspA) is upregulated and it’s increased expression promotes recognition by a specific receptor on a monocyte.&amp;lt;/span&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;The OspA-bound monocyte then releases proinflammatory [http://en.wikipedia.org/wiki/Cytokine cytokines] (i.e. [http://en.wikipedia.org/wiki/Interferon interferon]), as well as [http://en.wikipedia.org/wiki/Chemokine chemokines], such as [http://en.wikipedia.org/wiki/CXCL13 CXCL13]. In patients with LNB, there is an observed increase in the levels of these cytokines and chemokines in their CSF. The production of chemokines leads to the recruitment of other immune cells to the site of infection.&amp;lt;/span&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;[http://en.wikipedia.org/wiki/B_lymphocyte B-lymphocytes] respond to the new concentration gradient of CXCL13 between the blood and CSF and migrate into the CSF.&amp;lt;/span&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;B-lymphocytes undergo [http://en.wikipedia.org/wiki/Receptor-mediated_endocytosis receptor-mediated endocytosis], consuming the OspA antigens present in the CSF, thereby triggering its activation. The B-lymphocytes then are able to differentiate and mature into  [http://en.wikipedia.org/wiki/Plasma_cells plasma cells].&amp;lt;/span&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;The plasma cells create large quantities of anti-OspA antibodies specific to this strain of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; and release them into the CSF.&amp;lt;/span&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;The anti-OspA antibodies will then bind to the OspA on the spirochete’s membrane, thus killing the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt;.&amp;lt;/span&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
&amp;lt;/ol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;This process is two-sided in the sense that the OspA aids in the pathogenesis of new symptoms (neuroborreliosis) through the chemokine’s actions, as well as initiating the signaling cascade to destroy itself.&amp;lt;/span&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;OspA Vaccination&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Risk of developing Lyme disease can be &amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;mitigated&amp;lt;/span&amp;gt; by staying clear of areas with populations of ticks, wearing proper attire &amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;to minimize easily bitten areas of the body&amp;lt;/span&amp;gt;, and using &amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;insect repellents containing&amp;lt;/span&amp;gt; [http://en.wikipedia.org/wiki/DEET DEET] (N,N-diethy-m-toluamide). However, &amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;another effective means for prevention could be possible&amp;lt;/span&amp;gt; by using an outer surface protein from &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; &amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;in the creation of&amp;lt;/span&amp;gt; a vaccine.&amp;lt;ref name=&amp;quot;nigrovic&amp;quot;&amp;gt;PMID: 16893489&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;The membrane composition of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; is abundant in both OspA and OspB, and the two proteins share a 53% similarity in their primary sequences. Both OspA and OspB are expressed in the tick&#039;s gut and downregulated during feeding and aid in its survivability; however, OspA is overall less varied and reactive than OspB, which has greater variability.&amp;lt;ref name=&amp;quot;becker&amp;quot;&amp;gt;PMID: 15713683&amp;lt;/ref&amp;gt; The relatively conserved sequence of OspA thus lends itself better to study and application toward the development of a vaccine for a broader range of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; strains in the treatment of Lyme disease than that of OspB. The first vaccine used a purified recombinant form of OspA and functioned in blocking transmission of the spirochetes expressing OspA from tick to host during feeding, killing them while still attached to the tick&#039;s gut.&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;battisti&amp;quot;&amp;gt;PMID: 18779341&amp;lt;/ref&amp;gt; The vaccine, Lymerix, had shown 76% and 92% effectiveness in separate clinical trials in which patients were treated for two years following a three-dose schedule. However, the vaccination was suspended from use in 2002 when opponents claimed the [http://en.wikipedia.org/wiki/Immunoglobulin_G IgG antibodies] for OspA were associated with the onset of severe chronic arthritis, as well as other side effects affecting immunity.&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;plotkin&amp;quot;&amp;gt;PMID: 21217175&amp;lt;/ref&amp;gt;  This fact, in conjunction with the desire for a more widespread vaccine treating multiple strains of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt;, has spurred research towards a new vaccine.&lt;br /&gt;
&amp;lt;/span&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
To address this problem of international protection it would be helpful to create a chimera, mixing the OspA of different species. In order to do this the epitope of OspA should be studied. LA-2 &amp;lt;&amp;lt;SHOW FAB HIGHLIGHTED ON 1FJ1&amp;gt;&amp;gt; is a murine monoclonal antibody that binds strongly &amp;lt;&amp;lt;SHOW INTERACTION HIGHLIGHTED (ZOOMED IN) ON 1FJ1&amp;gt;&amp;gt; to OspA &amp;lt;&amp;lt;SHOW OSPA HIGHLIGHTED ON 1FJ1&amp;gt;&amp;gt;, and how effective a vaccine is correlated with LA-2 binding. 5&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;Structure of OspA&amp;lt;/h2&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;Structure load=&amp;quot;1fj1&amp;quot; size=&amp;quot;350&amp;quot; frame=&amp;quot;true&amp;quot; align=&amp;quot;right&amp;quot; name=&amp;quot;OspA-manip&amp;quot; caption=&amp;quot;Outer surface protein A (OspA) ([[1fj1|1FJ1]], chain F)&amp;quot; scene=&amp;quot;Studio:G2SecL03/Ospa_3loopscartoon/3&amp;quot;/&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
OspA is made of 21 anti-parallel β-strands and a single α-helix. 5 OspA is unique due to its dumbbell shape that contains two globular domains connected by a single layer β-sheet. 7 There are &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops/4&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;three key loops&amp;lt;/scene&amp;gt; located at the C-terminus that are important in binding, and &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-nor/3&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt; three residues that are unconserved between different strains&amp;lt;/scene&amp;gt;  &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-r/2&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;(toggle residue R-groups)&amp;lt;/scene&amp;gt; &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops3res/1&#039;&amp;gt;Three loops and three residues (with R-groups showing)&amp;lt;/scene&amp;gt;. &lt;br /&gt;
&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&lt;br /&gt;
Loop 1 &amp;lt;&amp;lt;LOOP 1&amp;gt;&amp;gt;, residues 206 and 216, has an important role in binding due to a large exposed surface area, high mobility. Loop 2 &amp;lt;&amp;lt;LOOP 2&amp;gt;&amp;gt;, residues 224-233, and Loop 3 &amp;lt;&amp;lt;LOOP 3&amp;gt;&amp;gt;, residues 246-257, are also areas that are involved in binding. LA-2 recognizes OspA Bb, but does not recognize OspA from Bg.and Ba. Between Bb. and Ba. genetic sequences are generally invariant, but two residues change between the species, ALA 208 &amp;lt;&amp;lt;ALA 208&amp;gt;&amp;gt; in Bb. is GLN in Ba., and ASN 251 &amp;lt;&amp;lt;ASN 251&amp;gt;&amp;gt; in Bb. is ALA in Ba.. Bg. has more variation and in addition to the previous two differences, has at least one more difference, where ALA 215 &amp;lt;&amp;lt;ALA 215&amp;gt;&amp;gt; in Bb. is LYS, Bg. sometimes also has a deletion at Bb.’s ALA 208. LA-2 and OspA of Bb. form a tight interface when binding, and the longer GLN sidechain found in Ba. and Bg. is more difficult to accommodate, causing less binding. A chimera that was weakly recognized by LA-2 was made with parts of loop 1 from Bb., and loops 2 and 3 from Bg. 5 Recently, a different kind of chimera has been made which combined the proximal region of Bb. and distal region of Ba., and was able to successfully protect mice from both species. 8&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h3&amp;gt;Reference List of Available Scenes for OspA&amp;lt;/h3&amp;gt;&lt;br /&gt;
&amp;lt;ul&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa_3loopscartoon/3&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Reset model&amp;lt;/scene&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops/4&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Three key loops&amp;lt;/scene&amp;gt; (close up)&amp;lt;/li&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-nor/3&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Three key residues&amp;lt;/scene&amp;gt; (Ala208, Ala215 and Asn251 in &amp;lt;i&amp;gt;B. burgdorferi&amp;lt;/i&amp;gt;, also hides R-groups)&lt;br /&gt;
         &amp;lt;ul&amp;gt;&lt;br /&gt;
           &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-r/2&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Display R-groups&amp;lt;/scene&amp;gt; of Ala208, Ala215 and Asn251&amp;lt;/li&amp;gt;&lt;br /&gt;
         &amp;lt;/ul&amp;gt;&lt;br /&gt;
     &amp;lt;/li&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops3res/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Three loops and all three residues (with R-groups showing)&amp;lt;/scene&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
&amp;lt;/ul&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;&amp;lt;span style=&amp;quot;background:yellow&amp;quot;&amp;gt;In-Prog&amp;lt;/span&amp;gt; References&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;span style=&amp;quot;background:yellow&amp;quot;&amp;gt;&amp;lt;b&amp;gt;Not fully structured yet with -ref- tags, just organizing all reference information for ease&amp;lt;/b&amp;gt;&amp;lt;/span&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;ul&amp;gt;&lt;br /&gt;
&amp;lt;li&amp;gt;1 Connolly, SE and Benach JL. 2005. The Versatile Roles of Antibodies in Borrelia Infections. Microbiology 3: 411-420.&amp;lt;br&amp;gt;&lt;br /&gt;
http://www.nature.com/nrmicro/journal/v3/n5/abs/nrmicro1149.html&amp;lt;br&amp;gt;&lt;br /&gt;
PMID: 15864264&lt;br /&gt;
&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;li&amp;gt;2 Rupprecht T, Koedel U, Fingerle V and Pfister H-W. 2008. The Pathogenesis of Lyme Neuroborreliosis: From Infection to Inflammation. Molecular Medicine 14(3-4): 205-212.&amp;lt;br&amp;gt;&lt;br /&gt;
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2148032/&amp;lt;br&amp;gt;&lt;br /&gt;
PMID: 18097481 &lt;br /&gt;
&amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;li&amp;gt;3 Ding W, Huang X, Yang X, Dunn J, et al. 2000. Structural Identification of a Key Protective B-Cell Epitope in Lyme Disease Antigen Osp A, Journal of Molecular Biology 302(5): 1153-1164.&amp;lt;br&amp;gt;&lt;br /&gt;
http://www.sciencedirect.com/science/article/pii/S0022283600941196&amp;lt;br&amp;gt;&lt;br /&gt;
PMID: 11183781&lt;br /&gt;
&amp;lt;ref name=&amp;quot;ding&amp;quot;&amp;gt;PMID: 11183781&amp;lt;/ref&amp;gt; &lt;br /&gt;
&lt;br /&gt;
&amp;lt;li&amp;gt;4 Nigrovic L, Thompson K. 2007. Epidemiology and Infection. The Lyme Vaccine: A Cautionary Tale. 135(1)1-8.&amp;lt;br&amp;gt;&lt;br /&gt;
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2870557/&amp;lt;br&amp;gt;&lt;br /&gt;
PMID: 16893489&lt;br /&gt;
&amp;lt;ref name=&amp;quot;nigrovic&amp;quot;&amp;gt;PMID: 16893489&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;li&amp;gt;5 Becker M et al. 2005. Structural Investigation of Borrelia burgdorferi OspB, a BactericidalFab Target. JOURNAL OF BIOLOGICAL CHEMISTRY. 280(17):17363–17370.&amp;lt;br&amp;gt;&lt;br /&gt;
http://www.jbc.org/content/280/17/17363.long&amp;lt;br&amp;gt;&lt;br /&gt;
PMID: 15713683&lt;br /&gt;
&amp;lt;ref name=&amp;quot;becker&amp;quot;&amp;gt;PMID: 15713683&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;li&amp;gt;6 Battisti JM,  Bono JL,  Rosa PA, et al. 2008. Outer Surface Protein A Protects Lyme Disease Spirochetes from Acquired Host Immunity in the Tick Vector. Infect. Immun. 76(11): 5228-5237.&amp;lt;br&amp;gt;&lt;br /&gt;
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2573341/&amp;lt;br&amp;gt;&lt;br /&gt;
PMID: 18779341&lt;br /&gt;
&amp;lt;ref name=&amp;quot;battisti&amp;quot;&amp;gt;PMID: 18779341&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;li&amp;gt;7 Plotkin S. 2011. Clinical Infectious Diseases. Correcting a Public Health Fiasco: The Need for a New Vaccine Against Lyme Disease. 52(3):s721-275.&amp;lt;br&amp;gt;&lt;br /&gt;
http://cid.oxfordjournals.org/content/52/suppl_3/s271.full&amp;lt;br&amp;gt;&lt;br /&gt;
PMID: 21217175&lt;br /&gt;
&amp;lt;ref name=&amp;quot;plotkin&amp;quot;&amp;gt;PMID: 21217175&amp;lt;/ref&amp;gt; &lt;br /&gt;
&lt;br /&gt;
&amp;lt;li&amp;gt;8 Koide? &amp;lt;span style=&amp;quot;background:yellow&amp;quot;&amp;gt;&amp;lt;b&amp;gt;Who used this?&amp;lt;/b&amp;gt;&amp;lt;/span&amp;gt;&amp;lt;br&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;li&amp;gt;9 Livey I, O’Rourke M, Traweger A, Savidis-Dacho H, Crowe B, Barrett P, Yang X, Dunn J, Luft B. 2011. Clinical Infectious Diseases. A new approach to a Lyme Disease Vaccine. 52(3):s266-s270.&amp;lt;br&amp;gt;&lt;br /&gt;
&amp;lt;br&amp;gt;&lt;br /&gt;
&amp;lt;/ul&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;References&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;references /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;External Links&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;ul&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://www.who.int/ith/diseases/lyme/en/index.html World Health Organization: Lyme Disease]&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://www.ncbi.nlm.nih.gov/pubmedhealth/PMH0002296/ PubMed Health: Lyme Disease]&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://www.aldf.com/ American Lyme Disease Foundation]&lt;br /&gt;
&amp;lt;/ul&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;Proteopedia Page Contributors and Editors&amp;lt;/h2&amp;gt;&lt;br /&gt;
[http://proteopedia.org/wiki/index.php/User:Kimberly_Slade Kimberly Slade], [http://proteopedia.org/wiki/index.php/User:Cara_Lin Cara Lin], [http://proteopedia.org/wiki/index.php/User:Andrea_Mullen Andrea Mullen], [http://proteopedia.org/wiki/index.php/User:Jenny_Kim_Kim Jenny Kim Kim]&lt;br /&gt;
&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&lt;/div&gt;</summary>
		<author><name>Jenny Kim Kim</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=User:Marvin_O%27Neal/OspA&amp;diff=1384294</id>
		<title>User:Marvin O&#039;Neal/OspA</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=User:Marvin_O%27Neal/OspA&amp;diff=1384294"/>
		<updated>2012-05-02T11:36:21Z</updated>

		<summary type="html">&lt;p&gt;Jenny Kim Kim: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;Structure load=&amp;quot;1fj1&amp;quot; size=&amp;quot;350&amp;quot; frame=&amp;quot;true&amp;quot; align=&amp;quot;right&amp;quot; name=&amp;quot;OspA-secondary&amp;quot; caption=&amp;quot;Outer surface protein A (OspA) ([[1fj1|1FJ1]], chain F) showing secondary structures.&amp;quot; scene=&amp;quot;Studio:G2SecL03/Ospa_default/5&amp;quot;/&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
&amp;lt;b&amp;gt;Outer Surface Protein A (OspA)&amp;lt;/b&amp;gt; &amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;is a major lipoprotein found on the surface of [http://en.wikipedia.org/wiki/Spirochaete spirochetes] from the genus [http://en.wikipedia.org/wiki/Borrelia &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt;] and is comprised of 21 anti-parallel β-strands and a single α-helix. OspA&#039;s expression is regulated at different points in time, from being downregulated during the tick&#039;s feeding process on its host to being upregulated in the host&#039;s cerebrospinal fluid (CSF) to induce inflammatory response, resulting in acute Lyme [http://en.wikipedia.org/wiki/Neuroborreliosis neuroborreliosis]. OspA has also been used as a vector in working towards the development of a vaccine for [http://en.wikipedia.org/wiki/Lyme_disease Lyme disease].&amp;lt;/span&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;b&amp;gt;&amp;lt;SPAN STYLE=&amp;quot;color:red&amp;quot;&amp;gt;NOTE: Red text indicates changes/additions I&#039;ve made and&amp;lt;/span&amp;gt; &amp;lt;SPAN STYLE=&amp;quot;color:black; background:yellow&amp;quot;&amp;gt;this style&amp;lt;/span&amp;gt; &amp;lt;SPAN STYLE=&amp;quot;color:red&amp;quot;&amp;gt;is pertinent thoughts/questions we should consider/address. All of this will be cleaned up for the final submitted page. ~Kim&amp;lt;/span&amp;gt;&amp;lt;/b&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;Introduction&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Lyme disease is caused by the spirochete &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; and spread via hard-bodied ticks belonging to the family [http://en.wikipedia.org/wiki/Ixodidae &amp;lt;i&amp;gt;Ixodidae&amp;lt;/i&amp;gt;]. The &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; spirochetes are motile, helical organisms &amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;have several lipoproteins exposed on the surfaces of their membranes that invoke a response from host immune systems. The predominant group of these is classified as the outer surface proteins (Osps). Both the pathogenesis of Lyme disease as well as the host&#039;s immune response stem from the effects of the spirochete&#039;s presence and involvement in the system.&amp;lt;/span&amp;gt;&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
The major strain of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; in the United States is [http://en.wikipedia.org/wiki/Borrelia_burgdorferi &amp;lt;i&amp;gt;Borrelia burgdorferi&amp;lt;/i&amp;gt;] &amp;lt;i&amp;gt;sensu stricto (Bb.)&amp;lt;/i&amp;gt;, with 20-100 cases of Lyme disease being reported per 100,000 people. In Europe, Lyme disease cases are more prevalent, with 100-130 diagnoses per 100,000 people, but are caused by the spirochetes [http://en.wikipedia.org/wiki/Borrelia_afzelii &amp;lt;i&amp;gt;Borrelia afzelii (Ba.)&amp;lt;/i&amp;gt;] and [http://en.wikipedia.org/wiki/Borrelia_garinii &amp;lt;i&amp;gt;Borrelia garinii (Bg.)&amp;lt;/i&amp;gt;] in addition to &amp;lt;i&amp;gt;B. burgdorferi&amp;lt;/i&amp;gt;.&amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;ding&amp;quot;&amp;gt;PMID: 11183781&amp;lt;/ref&amp;gt; &lt;br /&gt;
&lt;br /&gt;
     &amp;lt;SPAN STYLE=&amp;quot;background:yellow&amp;quot;&amp;gt;&amp;lt;b&amp;gt;Do we want to mention the number of Borrelia strains but the fact that there are only 4 which are infectious to humans? - need a reference though&amp;lt;/b&amp;gt;&amp;lt;/span&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Lyme disease is a debilitating condition that begins with a characteristic bullseye rash known as an [http://en.wikipedia.org/wiki/Erythema_chronicum_migrans erythema migrans (EM)] as well as &amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;the development of lesions on other parts of the body, not just at the site of the tick&#039;s attachment to its host&amp;lt;/span&amp;gt;. Secondary stage symptoms include affecting the heart, joints, and both the central and peripheral nervous systems. &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; have two major outer surface lipoproteins that are involved in Lyme disease: OspA and OspB. OspA is used in adhering to the tick&#039;s gut by binding with the tick receptor (TROSPA) &lt;br /&gt;
&lt;br /&gt;
     &amp;lt;SPAN STYLE=&amp;quot;background:yellow&amp;quot;&amp;gt;&amp;lt;b&amp;gt;Think a blurb about this would be useful- there isn&#039;t a wiki page for easy reference&amp;lt;/b&amp;gt;&amp;lt;/span&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;During feeding, OspA is downregulated in order to evade an immune response from the incoming host blood into the gut, releasing the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; from the gut wall and migrating into the tick&#039;s salivary glands, thereby allowing it to enter the host through the bite. This is evidenced by the fact that patients with Lyme disease have been found to not possess OspA antibodies in the early stages of the disease.&amp;lt;/span&amp;gt;&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt; OspA is the protein most related to acute Lyme neuroborreliosis (LNB), the neurological manifestations of Lyme disease.  &lt;br /&gt;
&lt;br /&gt;
     &amp;lt;SPAN STYLE=&amp;quot;background:yellow&amp;quot;&amp;gt;&amp;lt;b&amp;gt;We mention &amp;quot;two&amp;quot; proteins involved in Lyme Disease and just &#039;name&#039; OspB but we don&#039;t even have a sentence or two about it in this part?&amp;lt;/b&amp;gt;&amp;lt;/span&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;Once inside the host, the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; has a great number of mechanisms available to actively suppress the host&#039;s immune system response and neutralize its effector mechanisms, such as the expression of another outer surface protein, OspC, which prevents susceptibility to the host&#039;s [http://en.wikipedia.org/wiki/Innate_immune_system innate immunity] and [http://en.wikipedia.org/wiki/Complement_system complement systems]. Additionally, &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; is capable of suppressing many of its surface proteins to reduce its detectability, but can also utilize protective means by temporarily expressing them when needed.&amp;lt;/span&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;OspA &amp;amp; Lyme Disease&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Acute Lyme Neuroborreliosis (LNB) is part of the second stage of Lyme disease in which the spirochete invades the peripheral and central nervous systems (CNS). Symptoms of LNB include: Bannwarth’s Syndrome, Lymphocytic Meningitis, and [http://www.rightdiagnosis.com/sym/cranial_neuritis.htm Cranial] and [http://www.ncbi.nlm.nih.gov/pubmedhealth/PMH0001619/ Peripheral Neuritis]. &amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;The presence of OspA in the cerebrospinal fluid (CSF) is responsible for this complex inflammatory response in the brain that leads to the neuroborreliosis.&amp;lt;/span&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
[[Image:G2L03-OspA-mechanism.jpg|thumb|300px|Mechanism of the host inflammatory response to OspA]]&lt;br /&gt;
&lt;br /&gt;
&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;There are six steps involved in the host&#039;s inflammatory response to OspA:&amp;lt;/span&amp;gt; &amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt;&amp;lt;br&amp;gt;&lt;br /&gt;
&amp;lt;ol&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;When the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; enter the host’s CNS they encounter several different types of immune cells such as [http://en.wikipedia.org/wiki/Monocyte monocytes], [http://en.wikipedia.org/wiki/Macrophages macrophages], and [http://en.wikipedia.org/wiki/Dendritic_cells dendritic cells]. While in the CSF, outer surface protein A (OspA) is upregulated and it’s increased expression promotes recognition by a specific receptor on a monocyte.&amp;lt;/span&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;The OspA-bound monocyte then releases proinflammatory [http://en.wikipedia.org/wiki/Cytokine cytokines] (i.e. [http://en.wikipedia.org/wiki/Interferon interferon]), as well as [http://en.wikipedia.org/wiki/Chemokine chemokines], such as [http://en.wikipedia.org/wiki/CXCL13 CXCL13]. In patients with LNB, there is an observed increase in the levels of these cytokines and chemokines in their CSF. The production of chemokines leads to the recruitment of other immune cells to the site of infection.&amp;lt;/span&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;[http://en.wikipedia.org/wiki/B_lymphocyte B-lymphocytes] respond to the new concentration gradient of CXCL13 between the blood and CSF and migrate into the CSF.&amp;lt;/span&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;B-lymphocytes undergo [http://en.wikipedia.org/wiki/Receptor-mediated_endocytosis receptor-mediated endocytosis], consuming the OspA antigens present in the CSF, thereby triggering its activation. The B-lymphocytes then are able to differentiate and mature into  [http://en.wikipedia.org/wiki/Plasma_cells plasma cells].&amp;lt;/span&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;The plasma cells create large quantities of anti-OspA antibodies specific to this strain of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; and release them into the CSF.&amp;lt;/span&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;The anti-OspA antibodies will then bind to the OspA on the spirochete’s membrane, thus killing the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt;.&amp;lt;/span&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
&amp;lt;/ol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;This process is two-sided in the sense that the OspA aids in the pathogenesis of new symptoms (neuroborreliosis) through the chemokine’s actions, as well as initiating the signaling cascade to destroy itself.&amp;lt;/span&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;OspA Vaccination&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Risk of developing Lyme disease can be &amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;mitigated&amp;lt;/span&amp;gt; by staying clear of areas with populations of ticks, wearing proper attire &amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;to minimize easily bitten areas of the body&amp;lt;/span&amp;gt;, and using &amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;insect repellents containing&amp;lt;/span&amp;gt; [http://en.wikipedia.org/wiki/DEET DEET] (N,N-diethy-m-toluamide). However, &amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;another effective means for prevention could be possible&amp;lt;/span&amp;gt; by using an outer surface protein from &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; &amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;in the development of&amp;lt;/span&amp;gt; a vaccine.&amp;lt;ref name=&amp;quot;nigrovic&amp;quot;&amp;gt;PMID: 16893489&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;The membrane composition of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; is abundant in both OspA and OspB, and the two proteins share a 53% similarity in their primary sequences. Both OspA and OspB are expressed in the tick&#039;s gut and downregulated during feeding and aid in its survivability; however, OspA is overall less varied and reactive than OspB, which has greater variability.&amp;lt;ref name=&amp;quot;becker&amp;quot;&amp;gt;PMID: 15713683&amp;lt;/ref&amp;gt; The relatively conserved sequence of OspA thus lends itself better to study and application toward the development of a vaccine for a broader range of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; strains in the treatment of Lyme disease than that of OspB. The first vaccine used a purified recombinant form of OspA and functioned in blocking transmission of the spirochetes expressing OspA from tick to host during feeding, killing them while still attached to the tick&#039;s gut.&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;battisti&amp;quot;&amp;gt;PMID: 18779341&amp;lt;/ref&amp;gt; The vaccine, Lymerix, had shown 76% and 92% effectiveness in separate clinical trials in which patients were treated for two years following a three-dose schedule. However, the vaccination was suspended from use in 2002 when opponents claimed the [http://en.wikipedia.org/wiki/Immunoglobulin_G IgG antibodies] for OspA were associated with the onset of severe chronic arthritis, as well as other side effects affecting immunity.&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;plotkin&amp;quot;&amp;gt;PMID: 21217175&amp;lt;/ref&amp;gt; In conjunction with the desire for a more widespread vaccine treating multiple strains, research towards a new vaccine has already begun.&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/span&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
To address this problem of international protection it would be helpful to create a chimera, mixing the OspA of different species. In order to do this the epitope of OspA should be studied. LA-2 &amp;lt;&amp;lt;SHOW FAB HIGHLIGHTED ON 1FJ1&amp;gt;&amp;gt; is a murine monoclonal antibody that binds strongly &amp;lt;&amp;lt;SHOW INTERACTION HIGHLIGHTED (ZOOMED IN) ON 1FJ1&amp;gt;&amp;gt; to OspA &amp;lt;&amp;lt;SHOW OSPA HIGHLIGHTED ON 1FJ1&amp;gt;&amp;gt;, and how effective a vaccine is correlated with LA-2 binding. 5&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;Structure of OspA&amp;lt;/h2&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;Structure load=&amp;quot;1fj1&amp;quot; size=&amp;quot;350&amp;quot; frame=&amp;quot;true&amp;quot; align=&amp;quot;right&amp;quot; name=&amp;quot;OspA-manip&amp;quot; caption=&amp;quot;Outer surface protein A (OspA) ([[1fj1|1FJ1]], chain F)&amp;quot; scene=&amp;quot;Studio:G2SecL03/Ospa_3loopscartoon/3&amp;quot;/&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
OspA is made of 21 anti-parallel β-strands and a single α-helix. 5 OspA is unique due to its dumbbell shape that contains two globular domains connected by a single layer β-sheet. 7 There are &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops/4&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;three key loops&amp;lt;/scene&amp;gt; located at the C-terminus that are important in binding, and &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-nor/3&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt; three residues that are unconserved between different strains&amp;lt;/scene&amp;gt;  &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-r/2&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;(toggle residue R-groups)&amp;lt;/scene&amp;gt; &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops3res/1&#039;&amp;gt;Three loops and three residues (with R-groups showing)&amp;lt;/scene&amp;gt;. &lt;br /&gt;
&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&lt;br /&gt;
Loop 1 &amp;lt;&amp;lt;LOOP 1&amp;gt;&amp;gt;, residues 206 and 216, has an important role in binding due to a large exposed surface area, high mobility. Loop 2 &amp;lt;&amp;lt;LOOP 2&amp;gt;&amp;gt;, residues 224-233, and Loop 3 &amp;lt;&amp;lt;LOOP 3&amp;gt;&amp;gt;, residues 246-257, are also areas that are involved in binding. LA-2 recognizes OspA Bb, but does not recognize OspA from Bg.and Ba. Between Bb. and Ba. genetic sequences are generally invariant, but two residues change between the species, ALA 208 &amp;lt;&amp;lt;ALA 208&amp;gt;&amp;gt; in Bb. is GLN in Ba., and ASN 251 &amp;lt;&amp;lt;ASN 251&amp;gt;&amp;gt; in Bb. is ALA in Ba.. Bg. has more variation and in addition to the previous two differences, has at least one more difference, where ALA 215 &amp;lt;&amp;lt;ALA 215&amp;gt;&amp;gt; in Bb. is LYS, Bg. sometimes also has a deletion at Bb.’s ALA 208. LA-2 and OspA of Bb. form a tight interface when binding, and the longer GLN sidechain found in Ba. and Bg. is more difficult to accommodate, causing less binding. A chimera that was weakly recognized by LA-2 was made with parts of loop 1 from Bb., and loops 2 and 3 from Bg. 5 Recently, a different kind of chimera has been made which combined the proximal region of Bb. and distal region of Ba., and was able to successfully protect mice from both species. 8&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h3&amp;gt;Reference List of Available Scenes for OspA&amp;lt;/h3&amp;gt;&lt;br /&gt;
&amp;lt;ul&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa_3loopscartoon/3&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Reset model&amp;lt;/scene&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops/4&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Three key loops&amp;lt;/scene&amp;gt; (close up)&amp;lt;/li&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-nor/3&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Three key residues&amp;lt;/scene&amp;gt; (Ala208, Ala215 and Asn251 in &amp;lt;i&amp;gt;B. burgdorferi&amp;lt;/i&amp;gt;, also hides R-groups)&lt;br /&gt;
         &amp;lt;ul&amp;gt;&lt;br /&gt;
           &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-r/2&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Display R-groups&amp;lt;/scene&amp;gt; of Ala208, Ala215 and Asn251&amp;lt;/li&amp;gt;&lt;br /&gt;
         &amp;lt;/ul&amp;gt;&lt;br /&gt;
     &amp;lt;/li&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops3res/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Three loops and all three residues (with R-groups showing)&amp;lt;/scene&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
&amp;lt;/ul&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;&amp;lt;span style=&amp;quot;background:yellow&amp;quot;&amp;gt;In-Prog&amp;lt;/span&amp;gt; References&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;span style=&amp;quot;background:yellow&amp;quot;&amp;gt;&amp;lt;b&amp;gt;Not fully structured yet with -ref- tags, just organizing all reference information for ease&amp;lt;/b&amp;gt;&amp;lt;/span&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;ul&amp;gt;&lt;br /&gt;
&amp;lt;li&amp;gt;1 Connolly, SE and Benach JL. 2005. The Versatile Roles of Antibodies in Borrelia Infections. Microbiology 3: 411-420.&amp;lt;br&amp;gt;&lt;br /&gt;
http://www.nature.com/nrmicro/journal/v3/n5/abs/nrmicro1149.html&amp;lt;br&amp;gt;&lt;br /&gt;
PMID: 15864264&lt;br /&gt;
&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;li&amp;gt;2 Rupprecht T, Koedel U, Fingerle V and Pfister H-W. 2008. The Pathogenesis of Lyme Neuroborreliosis: From Infection to Inflammation. Molecular Medicine 14(3-4): 205-212.&amp;lt;br&amp;gt;&lt;br /&gt;
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2148032/&amp;lt;br&amp;gt;&lt;br /&gt;
PMID: 18097481 &lt;br /&gt;
&amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;li&amp;gt;3 (now 4) Nigrovic L, Thompson K. 2007. Epidemiology and Infection. The Lyme Vaccine: A Cautionary Tale. 135(1)1-8.&amp;lt;br&amp;gt;&lt;br /&gt;
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2870557/&amp;lt;br&amp;gt;&lt;br /&gt;
PMID: 16893489&lt;br /&gt;
&amp;lt;ref name=&amp;quot;nigrovic&amp;quot;&amp;gt;PMID: 16893489&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;li&amp;gt;4 (now 6) Battisti JM,  Bono JL,  Rosa PA, et al. 2008. Outer Surface Protein A Protects Lyme Disease Spirochetes from Acquired Host Immunity in the Tick Vector. Infect. Immun. 76(11): 5228-5237.&amp;lt;br&amp;gt;&lt;br /&gt;
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2573341/&amp;lt;br&amp;gt;&lt;br /&gt;
PMID: 18779341&lt;br /&gt;
&amp;lt;ref name=&amp;quot;battisti&amp;quot;&amp;gt;PMID: 18779341&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;li&amp;gt;5 (now 3) Ding W, Huang X, Yang X, Dunn J, et al. 2000. Structural Identification of a Key Protective B-Cell Epitope in Lyme Disease Antigen Osp A, Journal of Molecular Biology 302(5): 1153-1164.&amp;lt;br&amp;gt;&lt;br /&gt;
http://www.sciencedirect.com/science/article/pii/S0022283600941196&amp;lt;br&amp;gt;&lt;br /&gt;
PMID: 11183781&lt;br /&gt;
&amp;lt;ref name=&amp;quot;ding&amp;quot;&amp;gt;PMID: 11183781&amp;lt;/ref&amp;gt; &lt;br /&gt;
&lt;br /&gt;
&amp;lt;li&amp;gt;6 (now 7) Plotkin S. 2011. Clinical Infectious Diseases. Correcting a Public Health Fiasco: The Need for a New Vaccine Against Lyme Disease. 52(3):s721-275.&amp;lt;br&amp;gt;&lt;br /&gt;
http://cid.oxfordjournals.org/content/52/suppl_3/s271.full&amp;lt;br&amp;gt;&lt;br /&gt;
PMID: 21217175&lt;br /&gt;
&amp;lt;ref name=&amp;quot;plotkin&amp;quot;&amp;gt;PMID: 21217175&amp;lt;/ref&amp;gt; &lt;br /&gt;
&lt;br /&gt;
&amp;lt;li&amp;gt;7 Koide? &amp;lt;span style=&amp;quot;background:yellow&amp;quot;&amp;gt;&amp;lt;b&amp;gt;Who used this?&amp;lt;/b&amp;gt;&amp;lt;/span&amp;gt;&amp;lt;br&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;li&amp;gt;8 Livey I, O’Rourke M, Traweger A, Savidis-Dacho H, Crowe B, Barrett P, Yang X, Dunn J, Luft B. 2011. Clinical Infectious Diseases. A new approach to a Lyme Disease Vaccine. 52(3):s266-s270.&amp;lt;br&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;li&amp;gt;9 (now 5) Becker M et al. 2005. Structural Investigation of Borrelia burgdorferi OspB, a BactericidalFab Target. JOURNAL OF BIOLOGICAL CHEMISTRY. 280(17):17363–17370.&amp;lt;br&amp;gt;&lt;br /&gt;
http://www.jbc.org/content/280/17/17363.long&amp;lt;br&amp;gt;&lt;br /&gt;
PMID: 15713683&lt;br /&gt;
&amp;lt;br&amp;gt;&lt;br /&gt;
&amp;lt;/ul&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;References&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;references /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;External Links&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;ul&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://www.who.int/ith/diseases/lyme/en/index.html World Health Organization: Lyme Disease]&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://www.ncbi.nlm.nih.gov/pubmedhealth/PMH0002296/ PubMed Health: Lyme Disease]&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://www.aldf.com/ American Lyme Disease Foundation]&lt;br /&gt;
&amp;lt;/ul&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;Proteopedia Page Contributors and Editors&amp;lt;/h2&amp;gt;&lt;br /&gt;
[http://proteopedia.org/wiki/index.php/User:Kimberly_Slade Kimberly Slade], [http://proteopedia.org/wiki/index.php/User:Cara_Lin Cara Lin], [http://proteopedia.org/wiki/index.php/User:Andrea_Mullen Andrea Mullen], [http://proteopedia.org/wiki/index.php/User:Jenny_Kim_Kim Jenny Kim Kim]&lt;br /&gt;
&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&lt;/div&gt;</summary>
		<author><name>Jenny Kim Kim</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=User:Marvin_O%27Neal/OspA&amp;diff=1384293</id>
		<title>User:Marvin O&#039;Neal/OspA</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=User:Marvin_O%27Neal/OspA&amp;diff=1384293"/>
		<updated>2012-05-02T11:29:40Z</updated>

		<summary type="html">&lt;p&gt;Jenny Kim Kim: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;Structure load=&amp;quot;1fj1&amp;quot; size=&amp;quot;350&amp;quot; frame=&amp;quot;true&amp;quot; align=&amp;quot;right&amp;quot; name=&amp;quot;OspA-secondary&amp;quot; caption=&amp;quot;Outer surface protein A (OspA) ([[1fj1|1FJ1]], chain F) showing secondary structures.&amp;quot; scene=&amp;quot;Studio:G2SecL03/Ospa_default/5&amp;quot;/&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
&amp;lt;b&amp;gt;Outer Surface Protein A (OspA)&amp;lt;/b&amp;gt; &amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;is a major lipoprotein found on the surface of [http://en.wikipedia.org/wiki/Spirochaete spirochetes] from the genus [http://en.wikipedia.org/wiki/Borrelia &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt;] and is comprised of 21 anti-parallel β-strands and a single α-helix. OspA&#039;s expression is regulated at different points in time, from being downregulated during the tick&#039;s feeding process on its host to being upregulated in the host&#039;s cerebrospinal fluid (CSF) to induce inflammatory response, resulting in acute Lyme [http://en.wikipedia.org/wiki/Neuroborreliosis neuroborreliosis]. OspA has also been used as a vector in working towards the development of a vaccine for [http://en.wikipedia.org/wiki/Lyme_disease Lyme disease].&amp;lt;/span&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;b&amp;gt;&amp;lt;SPAN STYLE=&amp;quot;color:red&amp;quot;&amp;gt;NOTE: Red text indicates changes/additions I&#039;ve made and&amp;lt;/span&amp;gt; &amp;lt;SPAN STYLE=&amp;quot;color:black; background:yellow&amp;quot;&amp;gt;this style&amp;lt;/span&amp;gt; &amp;lt;SPAN STYLE=&amp;quot;color:red&amp;quot;&amp;gt;is pertinent thoughts/questions we should consider/address. All of this will be cleaned up for the final submitted page. ~Kim&amp;lt;/span&amp;gt;&amp;lt;/b&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;Introduction&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Lyme disease is caused by the spirochete &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; and spread via hard-bodied ticks belonging to the family [http://en.wikipedia.org/wiki/Ixodidae &amp;lt;i&amp;gt;Ixodidae&amp;lt;/i&amp;gt;]. The &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; spirochetes are motile, helical organisms &amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;have several lipoproteins exposed on the surfaces of their membranes that invoke a response from host immune systems. The predominant group of these is classified as the outer surface proteins (Osps). Both the pathogenesis of Lyme disease as well as the host&#039;s immune response stem from the effects of the spirochete&#039;s presence and involvement in the system.&amp;lt;/span&amp;gt;&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
The major strain of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; in the United States is [http://en.wikipedia.org/wiki/Borrelia_burgdorferi &amp;lt;i&amp;gt;Borrelia burgdorferi&amp;lt;/i&amp;gt;] &amp;lt;i&amp;gt;sensu stricto (Bb.)&amp;lt;/i&amp;gt;, with 20-100 cases of Lyme disease being reported per 100,000 people. In Europe, Lyme disease cases are more prevalent, with 100-130 diagnoses per 100,000 people, but are caused by the spirochetes [http://en.wikipedia.org/wiki/Borrelia_afzelii &amp;lt;i&amp;gt;Borrelia afzelii (Ba.)&amp;lt;/i&amp;gt;] and [http://en.wikipedia.org/wiki/Borrelia_garinii &amp;lt;i&amp;gt;Borrelia garinii (Bg.)&amp;lt;/i&amp;gt;] in addition to &amp;lt;i&amp;gt;B. burgdorferi&amp;lt;/i&amp;gt;.&amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;ding&amp;quot;&amp;gt;PMID: 11183781&amp;lt;/ref&amp;gt; &lt;br /&gt;
&lt;br /&gt;
     &amp;lt;SPAN STYLE=&amp;quot;background:yellow&amp;quot;&amp;gt;&amp;lt;b&amp;gt;Do we want to mention the number of Borrelia strains but the fact that there are only 4 which are infectious to humans? - need a reference though&amp;lt;/b&amp;gt;&amp;lt;/span&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Lyme disease is a debilitating condition that begins with a characteristic bullseye rash known as an [http://en.wikipedia.org/wiki/Erythema_chronicum_migrans erythema migrans (EM)] as well as &amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;the development of lesions on other parts of the body, not just at the site of the tick&#039;s attachment to its host&amp;lt;/span&amp;gt;. Secondary stage symptoms include affecting the heart, joints, and both the central and peripheral nervous systems. &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; have two major outer surface lipoproteins that are involved in Lyme disease: OspA and OspB. OspA is used in adhering to the tick&#039;s gut by binding with the tick receptor (TROSPA) &lt;br /&gt;
&lt;br /&gt;
     &amp;lt;SPAN STYLE=&amp;quot;background:yellow&amp;quot;&amp;gt;&amp;lt;b&amp;gt;Think a blurb about this would be useful- there isn&#039;t a wiki page for easy reference&amp;lt;/b&amp;gt;&amp;lt;/span&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;During feeding, OspA is downregulated in order to evade an immune response from the incoming host blood into the gut, releasing the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; from the gut wall and migrating into the tick&#039;s salivary glands, thereby allowing it to enter the host through the bite. This is evidenced by the fact that patients with Lyme disease have been found to not possess OspA antibodies in the early stages of the disease.&amp;lt;/span&amp;gt;&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt; OspA is the protein most related to acute Lyme neuroborreliosis (LNB), the neurological manifestations of Lyme disease.  &lt;br /&gt;
&lt;br /&gt;
     &amp;lt;SPAN STYLE=&amp;quot;background:yellow&amp;quot;&amp;gt;&amp;lt;b&amp;gt;We mention &amp;quot;two&amp;quot; proteins involved in Lyme Disease and just &#039;name&#039; OspB but we don&#039;t even have a sentence or two about it in this part?&amp;lt;/b&amp;gt;&amp;lt;/span&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;Once inside the host, the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; has a great number of mechanisms available to actively suppress the host&#039;s immune system response and neutralize its effector mechanisms, such as the expression of another outer surface protein, OspC, which prevents susceptibility to the host&#039;s [http://en.wikipedia.org/wiki/Innate_immune_system innate immunity] and [http://en.wikipedia.org/wiki/Complement_system complement systems]. Additionally, &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; is capable of suppressing many of its surface proteins to reduce its detectability, but can also utilize protective means by temporarily expressing them when needed.&amp;lt;/span&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;OspA &amp;amp; Lyme Disease&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Acute Lyme Neuroborreliosis (LNB) is part of the second stage of Lyme disease in which the spirochete invades the peripheral and central nervous systems (CNS). Symptoms of LNB include: Bannwarth’s Syndrome, Lymphocytic Meningitis, and [http://www.rightdiagnosis.com/sym/cranial_neuritis.htm Cranial] and [http://www.ncbi.nlm.nih.gov/pubmedhealth/PMH0001619/ Peripheral Neuritis]. &amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;The presence of OspA in the cerebrospinal fluid (CSF) is responsible for this complex inflammatory response in the brain that leads to the neuroborreliosis.&amp;lt;/span&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
[[Image:G2L03-OspA-mechanism.jpg|thumb|300px|Mechanism of the host inflammatory response to OspA]]&lt;br /&gt;
&lt;br /&gt;
&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;There are six steps involved in the host&#039;s inflammatory response to OspA:&amp;lt;/span&amp;gt; &amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt;&amp;lt;br&amp;gt;&lt;br /&gt;
&amp;lt;ol&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;When the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; enter the host’s CNS they encounter several different types of immune cells such as [http://en.wikipedia.org/wiki/Monocyte monocytes], [http://en.wikipedia.org/wiki/Macrophages macrophages], and [http://en.wikipedia.org/wiki/Dendritic_cells dendritic cells]. While in the CSF, outer surface protein A (OspA) is upregulated and it’s increased expression promotes recognition by a specific receptor on a monocyte.&amp;lt;/span&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;The OspA-bound monocyte then releases proinflammatory [http://en.wikipedia.org/wiki/Cytokine cytokines] (i.e. [http://en.wikipedia.org/wiki/Interferon interferon]), as well as [http://en.wikipedia.org/wiki/Chemokine chemokines], such as [http://en.wikipedia.org/wiki/CXCL13 CXCL13]. In patients with LNB, there is an observed increase in the levels of these cytokines and chemokines in their CSF. The production of chemokines leads to the recruitment of other immune cells to the site of infection.&amp;lt;/span&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;[http://en.wikipedia.org/wiki/B_lymphocyte B-lymphocytes] respond to the new concentration gradient of CXCL13 between the blood and CSF and migrate into the CSF.&amp;lt;/span&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;B-lymphocytes undergo [http://en.wikipedia.org/wiki/Receptor-mediated_endocytosis receptor-mediated endocytosis], consuming the OspA antigens present in the CSF, thereby triggering its activation. The B-lymphocytes then are able to differentiate and mature into  [http://en.wikipedia.org/wiki/Plasma_cells plasma cells].&amp;lt;/span&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;The plasma cells create large quantities of anti-OspA antibodies specific to this strain of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; and release them into the CSF.&amp;lt;/span&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;The anti-OspA antibodies will then bind to the OspA on the spirochete’s membrane, thus killing the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt;.&amp;lt;/span&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
&amp;lt;/ol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;This process is two-sided in the sense that the OspA aids in the pathogenesis of new symptoms (neuroborreliosis) through the chemokine’s actions, as well as initiating the signaling cascade to destroy itself.&amp;lt;/span&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;OspA Vaccination&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Risk of developing Lyme disease can be &amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;mitigated&amp;lt;/span&amp;gt; by staying clear of areas with populations of ticks, wearing proper attire &amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;to minimize easily bitten areas of the body&amp;lt;/span&amp;gt;, and using &amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;insect repellents containing&amp;lt;/span&amp;gt; [http://en.wikipedia.org/wiki/DEET DEET] (N,N-diethy-m-toluamide). However, &amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;another effective means for prevention could be possible&amp;lt;/span&amp;gt; by using an outer surface protein from &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; &amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;in the development of&amp;lt;/span&amp;gt; a vaccine.&amp;lt;ref name=&amp;quot;nigrovic&amp;quot;&amp;gt;PMID: 16893489&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;The membrane composition of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; is abundant in both OspA and OspB, and the two proteins share a 53% similarity in their primary sequences. Both OspA and OspB are expressed in the tick&#039;s gut and downregulated during feeding and aid in its survivability; however, OspA is overall less varied and reactive than OspB, which has greater variability.&amp;lt;ref name=&amp;quot;becker&amp;quot;&amp;gt;PMID: 15713683&amp;lt;/ref&amp;gt; The relatively conserved sequence of OspA thus lends itself better to study and application toward the development of a vaccine for a broader range of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; strains in the treatment of Lyme disease than that of OspB. The first vaccine used a purified recombinant form of OspA and functioned in blocking transmission of the spirochetes expressing OspA from tick to host during feeding, killing them while still attached to the tick&#039;s gut.&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;battisti&amp;quot;&amp;gt;PMID: 18779341&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
The vaccine, Lymerix, had shown 76% and 92% effectiveness in separate clinical trials in which patients were treated for two years following a three-dose schedule. However, the vaccine was pulled from use in 2002 when opponents claimed the [http://en.wikipedia.org/wiki/Immunoglobulin_G IgG antibodies] for OspA were associated with the onset of severe chronic arthritis, as well as other side effects affecting immunity.&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;plotkin&amp;quot;&amp;gt;PMID: 21217175&amp;lt;/ref&amp;gt; In conjunction with the desire for a more widespread vaccine treating multiple strains, research towards a new vaccine has already begun.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/span&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
To address this problem of international protection it would be helpful to create a chimera, mixing the OspA of different species. In order to do this the epitope of OspA should be studied. LA-2 &amp;lt;&amp;lt;SHOW FAB HIGHLIGHTED ON 1FJ1&amp;gt;&amp;gt; is a murine monoclonal antibody that binds strongly &amp;lt;&amp;lt;SHOW INTERACTION HIGHLIGHTED (ZOOMED IN) ON 1FJ1&amp;gt;&amp;gt; to OspA &amp;lt;&amp;lt;SHOW OSPA HIGHLIGHTED ON 1FJ1&amp;gt;&amp;gt;, and how effective a vaccine is correlated with LA-2 binding. 5&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;Structure of OspA&amp;lt;/h2&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;Structure load=&amp;quot;1fj1&amp;quot; size=&amp;quot;350&amp;quot; frame=&amp;quot;true&amp;quot; align=&amp;quot;right&amp;quot; name=&amp;quot;OspA-manip&amp;quot; caption=&amp;quot;Outer surface protein A (OspA) ([[1fj1|1FJ1]], chain F)&amp;quot; scene=&amp;quot;Studio:G2SecL03/Ospa_3loopscartoon/3&amp;quot;/&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
OspA is made of 21 anti-parallel β-strands and a single α-helix. 5 OspA is unique due to its dumbbell shape that contains two globular domains connected by a single layer β-sheet. 7 There are &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops/4&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;three key loops&amp;lt;/scene&amp;gt; located at the C-terminus that are important in binding, and &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-nor/3&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt; three residues that are unconserved between different strains&amp;lt;/scene&amp;gt;  &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-r/2&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;(toggle residue R-groups)&amp;lt;/scene&amp;gt; &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops3res/1&#039;&amp;gt;Three loops and three residues (with R-groups showing)&amp;lt;/scene&amp;gt;. &lt;br /&gt;
&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&lt;br /&gt;
Loop 1 &amp;lt;&amp;lt;LOOP 1&amp;gt;&amp;gt;, residues 206 and 216, has an important role in binding due to a large exposed surface area, high mobility. Loop 2 &amp;lt;&amp;lt;LOOP 2&amp;gt;&amp;gt;, residues 224-233, and Loop 3 &amp;lt;&amp;lt;LOOP 3&amp;gt;&amp;gt;, residues 246-257, are also areas that are involved in binding. LA-2 recognizes OspA Bb, but does not recognize OspA from Bg.and Ba. Between Bb. and Ba. genetic sequences are generally invariant, but two residues change between the species, ALA 208 &amp;lt;&amp;lt;ALA 208&amp;gt;&amp;gt; in Bb. is GLN in Ba., and ASN 251 &amp;lt;&amp;lt;ASN 251&amp;gt;&amp;gt; in Bb. is ALA in Ba.. Bg. has more variation and in addition to the previous two differences, has at least one more difference, where ALA 215 &amp;lt;&amp;lt;ALA 215&amp;gt;&amp;gt; in Bb. is LYS, Bg. sometimes also has a deletion at Bb.’s ALA 208. LA-2 and OspA of Bb. form a tight interface when binding, and the longer GLN sidechain found in Ba. and Bg. is more difficult to accommodate, causing less binding. A chimera that was weakly recognized by LA-2 was made with parts of loop 1 from Bb., and loops 2 and 3 from Bg. 5 Recently, a different kind of chimera has been made which combined the proximal region of Bb. and distal region of Ba., and was able to successfully protect mice from both species. 8&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h3&amp;gt;Reference List of Available Scenes for OspA&amp;lt;/h3&amp;gt;&lt;br /&gt;
&amp;lt;ul&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa_3loopscartoon/3&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Reset model&amp;lt;/scene&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops/4&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Three key loops&amp;lt;/scene&amp;gt; (close up)&amp;lt;/li&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-nor/3&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Three key residues&amp;lt;/scene&amp;gt; (Ala208, Ala215 and Asn251 in &amp;lt;i&amp;gt;B. burgdorferi&amp;lt;/i&amp;gt;, also hides R-groups)&lt;br /&gt;
         &amp;lt;ul&amp;gt;&lt;br /&gt;
           &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-r/2&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Display R-groups&amp;lt;/scene&amp;gt; of Ala208, Ala215 and Asn251&amp;lt;/li&amp;gt;&lt;br /&gt;
         &amp;lt;/ul&amp;gt;&lt;br /&gt;
     &amp;lt;/li&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops3res/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Three loops and all three residues (with R-groups showing)&amp;lt;/scene&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
&amp;lt;/ul&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;&amp;lt;span style=&amp;quot;background:yellow&amp;quot;&amp;gt;In-Prog&amp;lt;/span&amp;gt; References&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;span style=&amp;quot;background:yellow&amp;quot;&amp;gt;&amp;lt;b&amp;gt;Not fully structured yet with -ref- tags, just organizing all reference information for ease&amp;lt;/b&amp;gt;&amp;lt;/span&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;ul&amp;gt;&lt;br /&gt;
&amp;lt;li&amp;gt;1 Connolly, SE and Benach JL. 2005. The Versatile Roles of Antibodies in Borrelia Infections. Microbiology 3: 411-420.&amp;lt;br&amp;gt;&lt;br /&gt;
http://www.nature.com/nrmicro/journal/v3/n5/abs/nrmicro1149.html&amp;lt;br&amp;gt;&lt;br /&gt;
PMID: 15864264&lt;br /&gt;
&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;li&amp;gt;2 Rupprecht T, Koedel U, Fingerle V and Pfister H-W. 2008. The Pathogenesis of Lyme Neuroborreliosis: From Infection to Inflammation. Molecular Medicine 14(3-4): 205-212.&amp;lt;br&amp;gt;&lt;br /&gt;
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2148032/&amp;lt;br&amp;gt;&lt;br /&gt;
PMID: 18097481 &lt;br /&gt;
&amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;li&amp;gt;3 (now 4) Nigrovic L, Thompson K. 2007. Epidemiology and Infection. The Lyme Vaccine: A Cautionary Tale. 135(1)1-8.&amp;lt;br&amp;gt;&lt;br /&gt;
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2870557/&amp;lt;br&amp;gt;&lt;br /&gt;
PMID: 16893489&lt;br /&gt;
&amp;lt;ref name=&amp;quot;nigrovic&amp;quot;&amp;gt;PMID: 16893489&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;li&amp;gt;4 (now 6) Battisti JM,  Bono JL,  Rosa PA, et al. 2008. Outer Surface Protein A Protects Lyme Disease Spirochetes from Acquired Host Immunity in the Tick Vector. Infect. Immun. 76(11): 5228-5237.&amp;lt;br&amp;gt;&lt;br /&gt;
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2573341/&amp;lt;br&amp;gt;&lt;br /&gt;
PMID: 18779341&lt;br /&gt;
&amp;lt;ref name=&amp;quot;battisti&amp;quot;&amp;gt;PMID: 18779341&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;li&amp;gt;5 (now 3) Ding W, Huang X, Yang X, Dunn J, et al. 2000. Structural Identification of a Key Protective B-Cell Epitope in Lyme Disease Antigen Osp A, Journal of Molecular Biology 302(5): 1153-1164.&amp;lt;br&amp;gt;&lt;br /&gt;
http://www.sciencedirect.com/science/article/pii/S0022283600941196&amp;lt;br&amp;gt;&lt;br /&gt;
PMID: 11183781&lt;br /&gt;
&amp;lt;ref name=&amp;quot;ding&amp;quot;&amp;gt;PMID: 11183781&amp;lt;/ref&amp;gt; &lt;br /&gt;
&lt;br /&gt;
&amp;lt;li&amp;gt;6 (now 7) Plotkin S. 2011. Clinical Infectious Diseases. Correcting a Public Health Fiasco: The Need for a New Vaccine Against Lyme Disease. 52(3):s721-275.&amp;lt;br&amp;gt;&lt;br /&gt;
http://cid.oxfordjournals.org/content/52/suppl_3/s271.full&amp;lt;br&amp;gt;&lt;br /&gt;
PMID: 21217175&lt;br /&gt;
&amp;lt;ref name=&amp;quot;plotkin&amp;quot;&amp;gt;PMID: 21217175&amp;lt;/ref&amp;gt; &lt;br /&gt;
&lt;br /&gt;
&amp;lt;li&amp;gt;7 Koide? &amp;lt;span style=&amp;quot;background:yellow&amp;quot;&amp;gt;&amp;lt;b&amp;gt;Who used this?&amp;lt;/b&amp;gt;&amp;lt;/span&amp;gt;&amp;lt;br&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;li&amp;gt;8 Livey I, O’Rourke M, Traweger A, Savidis-Dacho H, Crowe B, Barrett P, Yang X, Dunn J, Luft B. 2011. Clinical Infectious Diseases. A new approach to a Lyme Disease Vaccine. 52(3):s266-s270.&amp;lt;br&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;li&amp;gt;9 (now 5) Becker M et al. 2005. Structural Investigation of Borrelia burgdorferi OspB, a BactericidalFab Target. JOURNAL OF BIOLOGICAL CHEMISTRY. 280(17):17363–17370.&amp;lt;br&amp;gt;&lt;br /&gt;
http://www.jbc.org/content/280/17/17363.long&amp;lt;br&amp;gt;&lt;br /&gt;
PMID: 15713683&lt;br /&gt;
&amp;lt;br&amp;gt;&lt;br /&gt;
&amp;lt;/ul&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;References&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;references /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;External Links&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;ul&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://www.who.int/ith/diseases/lyme/en/index.html World Health Organization: Lyme Disease]&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://www.ncbi.nlm.nih.gov/pubmedhealth/PMH0002296/ PubMed Health: Lyme Disease]&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://www.aldf.com/ American Lyme Disease Foundation]&lt;br /&gt;
&amp;lt;/ul&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;Proteopedia Page Contributors and Editors&amp;lt;/h2&amp;gt;&lt;br /&gt;
[http://proteopedia.org/wiki/index.php/User:Kimberly_Slade Kimberly Slade], [http://proteopedia.org/wiki/index.php/User:Cara_Lin Cara Lin], [http://proteopedia.org/wiki/index.php/User:Andrea_Mullen Andrea Mullen], [http://proteopedia.org/wiki/index.php/User:Jenny_Kim_Kim Jenny Kim Kim]&lt;br /&gt;
&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&lt;/div&gt;</summary>
		<author><name>Jenny Kim Kim</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=User:Marvin_O%27Neal/OspA&amp;diff=1384292</id>
		<title>User:Marvin O&#039;Neal/OspA</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=User:Marvin_O%27Neal/OspA&amp;diff=1384292"/>
		<updated>2012-05-02T11:19:29Z</updated>

		<summary type="html">&lt;p&gt;Jenny Kim Kim: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;Structure load=&amp;quot;1fj1&amp;quot; size=&amp;quot;350&amp;quot; frame=&amp;quot;true&amp;quot; align=&amp;quot;right&amp;quot; name=&amp;quot;OspA-secondary&amp;quot; caption=&amp;quot;Outer surface protein A (OspA) ([[1fj1|1FJ1]], chain F) showing secondary structures.&amp;quot; scene=&amp;quot;Studio:G2SecL03/Ospa_default/5&amp;quot;/&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
&amp;lt;b&amp;gt;Outer Surface Protein A (OspA)&amp;lt;/b&amp;gt; &amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;is a major lipoprotein found on the surface of [http://en.wikipedia.org/wiki/Spirochaete spirochetes] from the genus [http://en.wikipedia.org/wiki/Borrelia &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt;] and is comprised of 21 anti-parallel β-strands and a single α-helix. OspA&#039;s expression is regulated at different points in time, from being downregulated during the tick&#039;s feeding process on its host to being upregulated in the host&#039;s cerebrospinal fluid (CSF) to induce inflammatory response, resulting in acute Lyme [http://en.wikipedia.org/wiki/Neuroborreliosis neuroborreliosis]. OspA has also been used as a vector in working towards the development of a vaccine for [http://en.wikipedia.org/wiki/Lyme_disease Lyme disease].&amp;lt;/span&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;b&amp;gt;&amp;lt;SPAN STYLE=&amp;quot;color:red&amp;quot;&amp;gt;NOTE: Red text indicates changes/additions I&#039;ve made and&amp;lt;/span&amp;gt; &amp;lt;SPAN STYLE=&amp;quot;color:black; background:yellow&amp;quot;&amp;gt;this style&amp;lt;/span&amp;gt; &amp;lt;SPAN STYLE=&amp;quot;color:red&amp;quot;&amp;gt;is pertinent thoughts/questions we should consider/address. All of this will be cleaned up for the final submitted page. ~Kim&amp;lt;/span&amp;gt;&amp;lt;/b&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;Introduction&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Lyme disease is caused by the spirochete &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; and spread via hard-bodied ticks belonging to the family [http://en.wikipedia.org/wiki/Ixodidae &amp;lt;i&amp;gt;Ixodidae&amp;lt;/i&amp;gt;]. The &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; spirochetes are motile, helical organisms &amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;have several lipoproteins exposed on the surfaces of their membranes that invoke a response from host immune systems. The predominant group of these is classified as the outer surface proteins (Osps). Both the pathogenesis of Lyme disease as well as the host&#039;s immune response stem from the effects of the spirochete&#039;s presence and involvement in the system.&amp;lt;/span&amp;gt;&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
The major strain of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; in the United States is [http://en.wikipedia.org/wiki/Borrelia_burgdorferi &amp;lt;i&amp;gt;Borrelia burgdorferi&amp;lt;/i&amp;gt;] &amp;lt;i&amp;gt;sensu stricto (Bb.)&amp;lt;/i&amp;gt;, with 20-100 cases of Lyme disease being reported per 100,000 people. In Europe, Lyme disease cases are more prevalent, with 100-130 diagnoses per 100,000 people, but are caused by the spirochetes [http://en.wikipedia.org/wiki/Borrelia_afzelii &amp;lt;i&amp;gt;Borrelia afzelii (Ba.)&amp;lt;/i&amp;gt;] and [http://en.wikipedia.org/wiki/Borrelia_garinii &amp;lt;i&amp;gt;Borrelia garinii (Bg.)&amp;lt;/i&amp;gt;] in addition to &amp;lt;i&amp;gt;B. burgdorferi&amp;lt;/i&amp;gt;.&amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;ding&amp;quot;&amp;gt;PMID: 11183781&amp;lt;/ref&amp;gt; &lt;br /&gt;
&lt;br /&gt;
     &amp;lt;SPAN STYLE=&amp;quot;background:yellow&amp;quot;&amp;gt;&amp;lt;b&amp;gt;Do we want to mention the number of Borrelia strains but the fact that there are only 4 which are infectious to humans? - need a reference though&amp;lt;/b&amp;gt;&amp;lt;/span&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Lyme disease is a debilitating condition that begins with a characteristic bullseye rash known as an [http://en.wikipedia.org/wiki/Erythema_chronicum_migrans erythema migrans (EM)] as well as &amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;the development of lesions on other parts of the body, not just at the site of the tick&#039;s attachment to its host&amp;lt;/span&amp;gt;. Secondary stage symptoms include affecting the heart, joints, and both the central and peripheral nervous systems. &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; have two major outer surface lipoproteins that are involved in Lyme disease: OspA and OspB. OspA is used in adhering to the tick&#039;s gut by binding with the tick receptor (TROSPA) &lt;br /&gt;
&lt;br /&gt;
     &amp;lt;SPAN STYLE=&amp;quot;background:yellow&amp;quot;&amp;gt;&amp;lt;b&amp;gt;Think a blurb about this would be useful- there isn&#039;t a wiki page for easy reference&amp;lt;/b&amp;gt;&amp;lt;/span&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;During feeding, OspA is downregulated in order to evade an immune response from the incoming host blood into the gut, releasing the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; from the gut wall and migrating into the tick&#039;s salivary glands, thereby allowing it to enter the host through the bite. This is evidenced by the fact that patients with Lyme disease have been found to not possess OspA antibodies in the early stages of the disease.&amp;lt;/span&amp;gt;&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt; OspA is the protein most related to acute Lyme neuroborreliosis (LNB), the neurological manifestations of Lyme disease.  &lt;br /&gt;
&lt;br /&gt;
     &amp;lt;SPAN STYLE=&amp;quot;background:yellow&amp;quot;&amp;gt;&amp;lt;b&amp;gt;We mention &amp;quot;two&amp;quot; proteins involved in Lyme Disease and just &#039;name&#039; OspB but we don&#039;t even have a sentence or two about it in this part?&amp;lt;/b&amp;gt;&amp;lt;/span&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;Once inside the host, the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; has a great number of mechanisms available to actively suppress the host&#039;s immune system response and neutralize its effector mechanisms, such as the expression of another outer surface protein, OspC, which prevents susceptibility to the host&#039;s [http://en.wikipedia.org/wiki/Innate_immune_system innate immunity] and [http://en.wikipedia.org/wiki/Complement_system complement systems]. Additionally, &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; is capable of suppressing many of its surface proteins to reduce its detectability, but can also utilize protective means by temporarily expressing them when needed.&amp;lt;/span&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;OspA &amp;amp; Lyme Disease&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Acute Lyme Neuroborreliosis (LNB) is part of the second stage of Lyme disease in which the spirochete invades the peripheral and central nervous systems (CNS). Symptoms of LNB include: Bannwarth’s Syndrome, Lymphocytic Meningitis, and [http://www.rightdiagnosis.com/sym/cranial_neuritis.htm Cranial] and [http://www.ncbi.nlm.nih.gov/pubmedhealth/PMH0001619/ Peripheral Neuritis]. &amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;The presence of OspA in the cerebrospinal fluid (CSF) is responsible for this complex inflammatory response in the brain that leads to the neuroborreliosis.&amp;lt;/span&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
[[Image:G2L03-OspA-mechanism.jpg|thumb|300px|Mechanism of the host inflammatory response to OspA]]&lt;br /&gt;
&lt;br /&gt;
&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;There are six steps involved in the host&#039;s inflammatory response to OspA:&amp;lt;/span&amp;gt; &amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt;&amp;lt;br&amp;gt;&lt;br /&gt;
&amp;lt;ol&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;When the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; enter the host’s CNS they encounter several different types of immune cells such as [http://en.wikipedia.org/wiki/Monocyte monocytes], [http://en.wikipedia.org/wiki/Macrophages macrophages], and [http://en.wikipedia.org/wiki/Dendritic_cells dendritic cells]. While in the CSF, outer surface protein A (OspA) is upregulated and it’s increased expression promotes recognition by a specific receptor on a monocyte.&amp;lt;/span&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;The OspA-bound monocyte then releases proinflammatory [http://en.wikipedia.org/wiki/Cytokine cytokines] (i.e. [http://en.wikipedia.org/wiki/Interferon interferon]), as well as [http://en.wikipedia.org/wiki/Chemokine chemokines], such as [http://en.wikipedia.org/wiki/CXCL13 CXCL13]. In patients with LNB, there is an observed increase in the levels of these cytokines and chemokines in their CSF. The production of chemokines leads to the recruitment of other immune cells to the site of infection.&amp;lt;/span&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;[http://en.wikipedia.org/wiki/B_lymphocyte B-lymphocytes] respond to the new concentration gradient of CXCL13 between the blood and CSF and migrate into the CSF.&amp;lt;/span&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;B-lymphocytes undergo [http://en.wikipedia.org/wiki/Receptor-mediated_endocytosis receptor-mediated endocytosis], consuming the OspA antigens present in the CSF, thereby triggering its activation. The B-lymphocytes then are able to differentiate and mature into  [http://en.wikipedia.org/wiki/Plasma_cells plasma cells].&amp;lt;/span&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;The plasma cells create large quantities of anti-OspA antibodies specific to this strain of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; and release them into the CSF.&amp;lt;/span&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;The anti-OspA antibodies will then bind to the OspA on the spirochete’s membrane, thus killing the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt;.&amp;lt;/span&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
&amp;lt;/ol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;This process is two-sided in the sense that the OspA aids in the pathogenesis of new symptoms (neuroborreliosis) through the chemokine’s actions, as well as initiating the signaling cascade to destroy itself.&amp;lt;/span&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;OspA Vaccination&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Risk of developing Lyme disease can be &amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;mitigated&amp;lt;/span&amp;gt; by staying clear of areas with populations of ticks, wearing proper attire &amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;to minimize easily bitten areas of the body&amp;lt;/span&amp;gt;, and using &amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;insect repellents containing&amp;lt;/span&amp;gt; [http://en.wikipedia.org/wiki/DEET DEET] (N,N-diethy-m-toluamide). However, &amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;another effective means for prevention could be possible&amp;lt;/span&amp;gt; by using an outer surface protein from &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; &amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;in the development of&amp;lt;/span&amp;gt; a vaccine.&amp;lt;ref name=&amp;quot;nigrovic&amp;quot;&amp;gt;PMID: 16893489&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;The membrane composition of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; is abundant in both OspA and OspB, and the two proteins share a 53% similarity in their primary sequences. Both OspA and OspB are expressed in the tick&#039;s gut and downregulated during feeding and aid in its survivability; however, OspA is overall less varied and reactive than OspB, which has greater variability.&amp;lt;ref name=&amp;quot;becker&amp;quot;&amp;gt;PMID: 15713683&amp;lt;/ref&amp;gt; The relatively conserved sequence of OspA thus lends itself better to study and application toward the development of a vaccine for a broader range of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; strains in the treatment of Lyme disease than that of OspB. The first vaccine developed used a purified recombinant form of OspA and functioned in blocking transmission of the spirochetes from tick to host during feeding, killing them while thus still attached and expressing OspA in the tick&#039;s gut.&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;battisti&amp;quot;&amp;gt;PMID: 18779341&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Known as Lymerix, clinical trials had shown 76% and 92% effectiveness in treatment after two years when following a three-dose schedule. However, the vaccine was pulled from use in 2002 when opponents claimed the [http://en.wikipedia.org/wiki/Immunoglobulin_G IgG antibodies] for OspA were associated with the development of severe chronic arthritis, as well as other side effects affecting immunity.&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;plotkin&amp;quot;&amp;gt;PMID: 21217175&amp;lt;/ref&amp;gt; In conjunction with the desire for a more widespread vaccine treating multiple strains, research towards a new vaccine has already begun.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/span&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
To address this problem of international protection it would be helpful to create a chimera, mixing the OspA of different species. In order to do this the epitope of OspA should be studied. LA-2 &amp;lt;&amp;lt;SHOW FAB HIGHLIGHTED ON 1FJ1&amp;gt;&amp;gt; is a murine monoclonal antibody that binds strongly &amp;lt;&amp;lt;SHOW INTERACTION HIGHLIGHTED (ZOOMED IN) ON 1FJ1&amp;gt;&amp;gt; to OspA &amp;lt;&amp;lt;SHOW OSPA HIGHLIGHTED ON 1FJ1&amp;gt;&amp;gt;, and how effective a vaccine is correlated with LA-2 binding. 5&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;Structure of OspA&amp;lt;/h2&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;Structure load=&amp;quot;1fj1&amp;quot; size=&amp;quot;350&amp;quot; frame=&amp;quot;true&amp;quot; align=&amp;quot;right&amp;quot; name=&amp;quot;OspA-manip&amp;quot; caption=&amp;quot;Outer surface protein A (OspA) ([[1fj1|1FJ1]], chain F)&amp;quot; scene=&amp;quot;Studio:G2SecL03/Ospa_3loopscartoon/3&amp;quot;/&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
OspA is made of 21 anti-parallel β-strands and a single α-helix. 5 OspA is unique due to its dumbbell shape that contains two globular domains connected by a single layer β-sheet. 7 There are &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops/4&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;three key loops&amp;lt;/scene&amp;gt; located at the C-terminus that are important in binding, and &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-nor/3&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt; three residues that are unconserved between different strains&amp;lt;/scene&amp;gt;  &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-r/2&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;(toggle residue R-groups)&amp;lt;/scene&amp;gt; &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops3res/1&#039;&amp;gt;Three loops and three residues (with R-groups showing)&amp;lt;/scene&amp;gt;. &lt;br /&gt;
&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&lt;br /&gt;
Loop 1 &amp;lt;&amp;lt;LOOP 1&amp;gt;&amp;gt;, residues 206 and 216, has an important role in binding due to a large exposed surface area, high mobility. Loop 2 &amp;lt;&amp;lt;LOOP 2&amp;gt;&amp;gt;, residues 224-233, and Loop 3 &amp;lt;&amp;lt;LOOP 3&amp;gt;&amp;gt;, residues 246-257, are also areas that are involved in binding. LA-2 recognizes OspA Bb, but does not recognize OspA from Bg.and Ba. Between Bb. and Ba. genetic sequences are generally invariant, but two residues change between the species, ALA 208 &amp;lt;&amp;lt;ALA 208&amp;gt;&amp;gt; in Bb. is GLN in Ba., and ASN 251 &amp;lt;&amp;lt;ASN 251&amp;gt;&amp;gt; in Bb. is ALA in Ba.. Bg. has more variation and in addition to the previous two differences, has at least one more difference, where ALA 215 &amp;lt;&amp;lt;ALA 215&amp;gt;&amp;gt; in Bb. is LYS, Bg. sometimes also has a deletion at Bb.’s ALA 208. LA-2 and OspA of Bb. form a tight interface when binding, and the longer GLN sidechain found in Ba. and Bg. is more difficult to accommodate, causing less binding. A chimera that was weakly recognized by LA-2 was made with parts of loop 1 from Bb., and loops 2 and 3 from Bg. 5 Recently, a different kind of chimera has been made which combined the proximal region of Bb. and distal region of Ba., and was able to successfully protect mice from both species. 8&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h3&amp;gt;Reference List of Available Scenes for OspA&amp;lt;/h3&amp;gt;&lt;br /&gt;
&amp;lt;ul&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa_3loopscartoon/3&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Reset model&amp;lt;/scene&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops/4&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Three key loops&amp;lt;/scene&amp;gt; (close up)&amp;lt;/li&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-nor/3&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Three key residues&amp;lt;/scene&amp;gt; (Ala208, Ala215 and Asn251 in &amp;lt;i&amp;gt;B. burgdorferi&amp;lt;/i&amp;gt;, also hides R-groups)&lt;br /&gt;
         &amp;lt;ul&amp;gt;&lt;br /&gt;
           &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-r/2&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Display R-groups&amp;lt;/scene&amp;gt; of Ala208, Ala215 and Asn251&amp;lt;/li&amp;gt;&lt;br /&gt;
         &amp;lt;/ul&amp;gt;&lt;br /&gt;
     &amp;lt;/li&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops3res/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Three loops and all three residues (with R-groups showing)&amp;lt;/scene&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
&amp;lt;/ul&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;&amp;lt;span style=&amp;quot;background:yellow&amp;quot;&amp;gt;In-Prog&amp;lt;/span&amp;gt; References&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;span style=&amp;quot;background:yellow&amp;quot;&amp;gt;&amp;lt;b&amp;gt;Not fully structured yet with -ref- tags, just organizing all reference information for ease&amp;lt;/b&amp;gt;&amp;lt;/span&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;ul&amp;gt;&lt;br /&gt;
&amp;lt;li&amp;gt;1 Connolly, SE and Benach JL. 2005. The Versatile Roles of Antibodies in Borrelia Infections. Microbiology 3: 411-420.&amp;lt;br&amp;gt;&lt;br /&gt;
http://www.nature.com/nrmicro/journal/v3/n5/abs/nrmicro1149.html&amp;lt;br&amp;gt;&lt;br /&gt;
PMID: 15864264&lt;br /&gt;
&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;li&amp;gt;2 Rupprecht T, Koedel U, Fingerle V and Pfister H-W. 2008. The Pathogenesis of Lyme Neuroborreliosis: From Infection to Inflammation. Molecular Medicine 14(3-4): 205-212.&amp;lt;br&amp;gt;&lt;br /&gt;
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2148032/&amp;lt;br&amp;gt;&lt;br /&gt;
PMID: 18097481 &lt;br /&gt;
&amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;li&amp;gt;3 (now 4) Nigrovic L, Thompson K. 2007. Epidemiology and Infection. The Lyme Vaccine: A Cautionary Tale. 135(1)1-8.&amp;lt;br&amp;gt;&lt;br /&gt;
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2870557/&amp;lt;br&amp;gt;&lt;br /&gt;
PMID: 16893489&lt;br /&gt;
&amp;lt;ref name=&amp;quot;nigrovic&amp;quot;&amp;gt;PMID: 16893489&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;li&amp;gt;4 (now 6) Battisti JM,  Bono JL,  Rosa PA, et al. 2008. Outer Surface Protein A Protects Lyme Disease Spirochetes from Acquired Host Immunity in the Tick Vector. Infect. Immun. 76(11): 5228-5237.&amp;lt;br&amp;gt;&lt;br /&gt;
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2573341/&amp;lt;br&amp;gt;&lt;br /&gt;
PMID: 18779341&lt;br /&gt;
&amp;lt;ref name=&amp;quot;battisti&amp;quot;&amp;gt;PMID: 18779341&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;li&amp;gt;5 (now 3) Ding W, Huang X, Yang X, Dunn J, et al. 2000. Structural Identification of a Key Protective B-Cell Epitope in Lyme Disease Antigen Osp A, Journal of Molecular Biology 302(5): 1153-1164.&amp;lt;br&amp;gt;&lt;br /&gt;
http://www.sciencedirect.com/science/article/pii/S0022283600941196&amp;lt;br&amp;gt;&lt;br /&gt;
PMID: 11183781&lt;br /&gt;
&amp;lt;ref name=&amp;quot;ding&amp;quot;&amp;gt;PMID: 11183781&amp;lt;/ref&amp;gt; &lt;br /&gt;
&lt;br /&gt;
&amp;lt;li&amp;gt;6 (now 7) Plotkin S. 2011. Clinical Infectious Diseases. Correcting a Public Health Fiasco: The Need for a New Vaccine Against Lyme Disease. 52(3):s721-275.&amp;lt;br&amp;gt;&lt;br /&gt;
http://cid.oxfordjournals.org/content/52/suppl_3/s271.full&amp;lt;br&amp;gt;&lt;br /&gt;
PMID: 21217175&lt;br /&gt;
&amp;lt;ref name=&amp;quot;plotkin&amp;quot;&amp;gt;PMID: 21217175&amp;lt;/ref&amp;gt; &lt;br /&gt;
&lt;br /&gt;
&amp;lt;li&amp;gt;7 Koide? &amp;lt;span style=&amp;quot;background:yellow&amp;quot;&amp;gt;&amp;lt;b&amp;gt;Who used this?&amp;lt;/b&amp;gt;&amp;lt;/span&amp;gt;&amp;lt;br&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;li&amp;gt;8 Livey I, O’Rourke M, Traweger A, Savidis-Dacho H, Crowe B, Barrett P, Yang X, Dunn J, Luft B. 2011. Clinical Infectious Diseases. A new approach to a Lyme Disease Vaccine. 52(3):s266-s270.&amp;lt;br&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;li&amp;gt;9 (now 5) Becker M et al. 2005. Structural Investigation of Borrelia burgdorferi OspB, a BactericidalFab Target. JOURNAL OF BIOLOGICAL CHEMISTRY. 280(17):17363–17370.&amp;lt;br&amp;gt;&lt;br /&gt;
http://www.jbc.org/content/280/17/17363.long&amp;lt;br&amp;gt;&lt;br /&gt;
PMID: 15713683&lt;br /&gt;
&amp;lt;br&amp;gt;&lt;br /&gt;
&amp;lt;/ul&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;References&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;references /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;External Links&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;ul&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://www.who.int/ith/diseases/lyme/en/index.html World Health Organization: Lyme Disease]&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://www.ncbi.nlm.nih.gov/pubmedhealth/PMH0002296/ PubMed Health: Lyme Disease]&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://www.aldf.com/ American Lyme Disease Foundation]&lt;br /&gt;
&amp;lt;/ul&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;Proteopedia Page Contributors and Editors&amp;lt;/h2&amp;gt;&lt;br /&gt;
[http://proteopedia.org/wiki/index.php/User:Kimberly_Slade Kimberly Slade], [http://proteopedia.org/wiki/index.php/User:Cara_Lin Cara Lin], [http://proteopedia.org/wiki/index.php/User:Andrea_Mullen Andrea Mullen], [http://proteopedia.org/wiki/index.php/User:Jenny_Kim_Kim Jenny Kim Kim]&lt;br /&gt;
&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&lt;/div&gt;</summary>
		<author><name>Jenny Kim Kim</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=User:Marvin_O%27Neal/OspA&amp;diff=1384291</id>
		<title>User:Marvin O&#039;Neal/OspA</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=User:Marvin_O%27Neal/OspA&amp;diff=1384291"/>
		<updated>2012-05-02T11:02:09Z</updated>

		<summary type="html">&lt;p&gt;Jenny Kim Kim: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;Structure load=&amp;quot;1fj1&amp;quot; size=&amp;quot;350&amp;quot; frame=&amp;quot;true&amp;quot; align=&amp;quot;right&amp;quot; name=&amp;quot;OspA-secondary&amp;quot; caption=&amp;quot;Outer surface protein A (OspA) ([[1fj1|1FJ1]], chain F) showing secondary structures.&amp;quot; scene=&amp;quot;Studio:G2SecL03/Ospa_default/5&amp;quot;/&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
&amp;lt;b&amp;gt;Outer Surface Protein A (OspA)&amp;lt;/b&amp;gt; &amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;is a major lipoprotein found on the surface of [http://en.wikipedia.org/wiki/Spirochaete spirochetes] from the genus [http://en.wikipedia.org/wiki/Borrelia &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt;] and is comprised of 21 anti-parallel β-strands and a single α-helix. OspA&#039;s expression is regulated at different points in time, from being downregulated during the tick&#039;s feeding process on its host to being upregulated in the host&#039;s cerebrospinal fluid (CSF) to induce inflammatory response, resulting in acute Lyme [http://en.wikipedia.org/wiki/Neuroborreliosis neuroborreliosis]. OspA has also been used as a vector in working towards the development of a vaccine for [http://en.wikipedia.org/wiki/Lyme_disease Lyme disease].&amp;lt;/span&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;b&amp;gt;&amp;lt;SPAN STYLE=&amp;quot;color:red&amp;quot;&amp;gt;NOTE: Red text indicates changes/additions I&#039;ve made and&amp;lt;/span&amp;gt; &amp;lt;SPAN STYLE=&amp;quot;color:black; background:yellow&amp;quot;&amp;gt;this style&amp;lt;/span&amp;gt; &amp;lt;SPAN STYLE=&amp;quot;color:red&amp;quot;&amp;gt;is pertinent thoughts/questions we should consider/address. All of this will be cleaned up for the final submitted page. ~Kim&amp;lt;/span&amp;gt;&amp;lt;/b&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;Introduction&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Lyme disease is caused by the spirochete &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; and spread via hard-bodied ticks belonging to the family [http://en.wikipedia.org/wiki/Ixodidae &amp;lt;i&amp;gt;Ixodidae&amp;lt;/i&amp;gt;]. The &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; spirochetes are motile, helical organisms &amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;have several lipoproteins exposed on the surfaces of their membranes that invoke a response from host immune systems. The predominant group of these is classified as the outer surface proteins (Osps). Both the pathogenesis of Lyme disease as well as the host&#039;s immune response stem from the effects of the spirochete&#039;s presence and involvement in the system.&amp;lt;/span&amp;gt;&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
The major strain of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; in the United States is [http://en.wikipedia.org/wiki/Borrelia_burgdorferi &amp;lt;i&amp;gt;Borrelia burgdorferi&amp;lt;/i&amp;gt;] &amp;lt;i&amp;gt;sensu stricto (Bb.)&amp;lt;/i&amp;gt;, with 20-100 cases of Lyme disease being reported per 100,000 people. In Europe, Lyme disease cases are more prevalent, with 100-130 diagnoses per 100,000 people, but are caused by the spirochetes [http://en.wikipedia.org/wiki/Borrelia_afzelii &amp;lt;i&amp;gt;Borrelia afzelii (Ba.)&amp;lt;/i&amp;gt;] and [http://en.wikipedia.org/wiki/Borrelia_garinii &amp;lt;i&amp;gt;Borrelia garinii (Bg.)&amp;lt;/i&amp;gt;] in addition to &amp;lt;i&amp;gt;B. burgdorferi&amp;lt;/i&amp;gt;.&amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;ding&amp;quot;&amp;gt;PMID: 11183781&amp;lt;/ref&amp;gt; &lt;br /&gt;
&lt;br /&gt;
     &amp;lt;SPAN STYLE=&amp;quot;background:yellow&amp;quot;&amp;gt;&amp;lt;b&amp;gt;Do we want to mention the number of Borrelia strains but the fact that there are only 4 which are infectious to humans? - need a reference though&amp;lt;/b&amp;gt;&amp;lt;/span&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Lyme disease is a debilitating condition that begins with a characteristic bullseye rash known as an [http://en.wikipedia.org/wiki/Erythema_chronicum_migrans erythema migrans (EM)] as well as &amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;the development of lesions on other parts of the body, not just at the site of the tick&#039;s attachment to its host&amp;lt;/span&amp;gt;. Secondary stage symptoms include affecting the heart, joints, and both the central and peripheral nervous systems. &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; have two major outer surface lipoproteins that are involved in Lyme disease: OspA and OspB. OspA is used in adhering to the tick&#039;s gut by binding with the tick receptor (TROSPA) &lt;br /&gt;
&lt;br /&gt;
     &amp;lt;SPAN STYLE=&amp;quot;background:yellow&amp;quot;&amp;gt;&amp;lt;b&amp;gt;Think a blurb about this would be useful- there isn&#039;t a wiki page for easy reference&amp;lt;/b&amp;gt;&amp;lt;/span&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;During feeding, OspA is downregulated in order to evade an immune response from the incoming host blood into the gut, releasing the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; from the gut wall and migrating into the tick&#039;s salivary glands, thereby allowing it to enter the host through the bite. This is evidenced by the fact that patients with Lyme disease have been found to not possess OspA antibodies in the early stages of the disease.&amp;lt;/span&amp;gt;&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt; OspA is the protein most related to acute Lyme neuroborreliosis (LNB), the neurological manifestations of Lyme disease.  &lt;br /&gt;
&lt;br /&gt;
     &amp;lt;SPAN STYLE=&amp;quot;background:yellow&amp;quot;&amp;gt;&amp;lt;b&amp;gt;We mention &amp;quot;two&amp;quot; proteins involved in Lyme Disease and just &#039;name&#039; OspB but we don&#039;t even have a sentence or two about it in this part?&amp;lt;/b&amp;gt;&amp;lt;/span&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;Once inside the host, the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; has a great number of mechanisms available to actively suppress the host&#039;s immune system response and neutralize its effector mechanisms, such as the expression of another outer surface protein, OspC, which prevents susceptibility to the host&#039;s [http://en.wikipedia.org/wiki/Innate_immune_system innate immunity] and [http://en.wikipedia.org/wiki/Complement_system complement systems]. Additionally, &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; is capable of suppressing many of its surface proteins to reduce its detectability, but can also utilize protective means by temporarily expressing them when needed.&amp;lt;/span&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;OspA &amp;amp; Lyme Disease&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Acute Lyme Neuroborreliosis (LNB) is part of the second stage of Lyme disease in which the spirochete invades the peripheral and central nervous systems (CNS). Symptoms of LNB include: Bannwarth’s Syndrome, Lymphocytic Meningitis, and [http://www.rightdiagnosis.com/sym/cranial_neuritis.htm Cranial] and [http://www.ncbi.nlm.nih.gov/pubmedhealth/PMH0001619/ Peripheral Neuritis]. &amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;The presence of OspA in the cerebrospinal fluid (CSF) is responsible for this complex inflammatory response in the brain that leads to the neuroborreliosis.&amp;lt;/span&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
[[Image:G2L03-OspA-mechanism.jpg|thumb|300px|Mechanism of the host inflammatory response to OspA]]&lt;br /&gt;
&lt;br /&gt;
&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;There are six steps involved in the host&#039;s inflammatory response to OspA:&amp;lt;/span&amp;gt; &amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt;&amp;lt;br&amp;gt;&lt;br /&gt;
&amp;lt;ol&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;When the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; enter the host’s CNS they encounter several different types of immune cells such as [http://en.wikipedia.org/wiki/Monocyte monocytes], [http://en.wikipedia.org/wiki/Macrophages macrophages], and [http://en.wikipedia.org/wiki/Dendritic_cells dendritic cells]. While in the CSF, outer surface protein A (OspA) is upregulated and it’s increased expression promotes recognition by a specific receptor on a monocyte.&amp;lt;/span&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;The OspA-bound monocyte then releases proinflammatory [http://en.wikipedia.org/wiki/Cytokine cytokines] (i.e. [http://en.wikipedia.org/wiki/Interferon interferon]), as well as [http://en.wikipedia.org/wiki/Chemokine chemokines], such as [http://en.wikipedia.org/wiki/CXCL13 CXCL13]. In patients with LNB, there is an observed increase in the levels of these cytokines and chemokines in their CSF. The production of chemokines leads to the recruitment of other immune cells to the site of infection.&amp;lt;/span&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;[http://en.wikipedia.org/wiki/B_lymphocyte B-lymphocytes] respond to the new concentration gradient of CXCL13 between the blood and CSF and migrate into the CSF.&amp;lt;/span&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;B-lymphocytes undergo [http://en.wikipedia.org/wiki/Receptor-mediated_endocytosis receptor-mediated endocytosis], consuming the OspA antigens present in the CSF, thereby triggering its activation. The B-lymphocytes then are able to differentiate and mature into  [http://en.wikipedia.org/wiki/Plasma_cells plasma cells].&amp;lt;/span&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;The plasma cells create large quantities of anti-OspA antibodies specific to this strain of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; and release them into the CSF.&amp;lt;/span&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;The anti-OspA antibodies will then bind to the OspA on the spirochete’s membrane, thus killing the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt;.&amp;lt;/span&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
&amp;lt;/ol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;This process is two-sided in the sense that the OspA aids in the pathogenesis of new symptoms (neuroborreliosis) through the chemokine’s actions, as well as initiating the signaling cascade to destroy itself.&amp;lt;/span&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;OspA Vaccination&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Risk of developing Lyme disease can be &amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;mitigated&amp;lt;/span&amp;gt; by staying clear of areas with populations of ticks, wearing proper attire &amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;to minimize easily bitten areas of the body&amp;lt;/span&amp;gt;, and using &amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;insect repellents containing&amp;lt;/span&amp;gt; [http://en.wikipedia.org/wiki/DEET DEET] (N,N-diethy-m-toluamide). However, &amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;another effective means for prevention could be possible&amp;lt;/span&amp;gt; by using an outer surface protein from &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; &amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;in the development of&amp;lt;/span&amp;gt; a vaccine.&amp;lt;ref name=&amp;quot;nigrovic&amp;quot;&amp;gt;PMID: 16893489&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;The membrane composition of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; is abundant in both OspA and OspB, and the two proteins share a 53% similarity in their primary sequences. Both are also expressed in the tick&#039;s gut and downregulated during feeding and aid in its survivability; however, OspA is overall less varied and reactive than OspB, which has much more variability.&amp;lt;ref name=&amp;quot;becker&amp;quot;&amp;gt;PMID: 15713683&amp;lt;/ref&amp;gt; The relatively conserved sequence of OspA thus better lends itself to study than that of OspB and applications toward the development of a vaccine for Lyme disease for a broader range of strains. The first vaccine developed used a purified recombinant form of OspA and functioned in blocking transmission of the spirochetes from tick to host during feeding, killing them while thus still attached and expressing OspA in the tick&#039;s gut.&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;battisti&amp;quot;&amp;gt;PMID: 18779341&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Known as Lymerix, clinical trials had shown 76% and 92% effectiveness in treatment after two years when following a three-dose schedule. However, the vaccine was pulled from use in 2002 when opponents claimed the [http://en.wikipedia.org/wiki/Immunoglobulin_G IgG antibodies] for OspA were associated with the development of severe chronic arthritis, as well as other side effects affecting immunity.&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;plotkin&amp;quot;&amp;gt;PMID: 21217175&amp;lt;/ref&amp;gt; In conjunction with the desire for a more widespread vaccine treating multiple strains, research towards a new vaccine has been under development.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/span&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
LYMErix, was discontinued in 2002 due to various weaknesses of the vaccine including its &amp;lt;80% efficacy, requirement for 3 doses, lack of data concerning the effects of the vaccine on children, and limitation of protection to the North American species of Borrelia. 6 To address this problem of international protection it would be helpful to create a chimera, mixing the OspA of different species. In order to do this the epitope of OspA should be studied. LA-2 &amp;lt;&amp;lt;SHOW FAB HIGHLIGHTED ON 1FJ1&amp;gt;&amp;gt; is a murine monoclonal antibody that binds strongly &amp;lt;&amp;lt;SHOW INTERACTION HIGHLIGHTED (ZOOMED IN) ON 1FJ1&amp;gt;&amp;gt; to OspA &amp;lt;&amp;lt;SHOW OSPA HIGHLIGHTED ON 1FJ1&amp;gt;&amp;gt;, and how effective a vaccine is correlated with LA-2 binding. 5&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;Structure of OspA&amp;lt;/h2&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;Structure load=&amp;quot;1fj1&amp;quot; size=&amp;quot;350&amp;quot; frame=&amp;quot;true&amp;quot; align=&amp;quot;right&amp;quot; name=&amp;quot;OspA-manip&amp;quot; caption=&amp;quot;Outer surface protein A (OspA) ([[1fj1|1FJ1]], chain F)&amp;quot; scene=&amp;quot;Studio:G2SecL03/Ospa_3loopscartoon/3&amp;quot;/&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
OspA is made of 21 anti-parallel β-strands and a single α-helix. 5 OspA is unique due to its dumbbell shape that contains two globular domains connected by a single layer β-sheet. 7 There are &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops/4&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;three key loops&amp;lt;/scene&amp;gt; located at the C-terminus that are important in binding, and &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-nor/3&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt; three residues that are unconserved between different strains&amp;lt;/scene&amp;gt;  &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-r/2&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;(toggle residue R-groups)&amp;lt;/scene&amp;gt; &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops3res/1&#039;&amp;gt;Three loops and three residues (with R-groups showing)&amp;lt;/scene&amp;gt;. &lt;br /&gt;
&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&lt;br /&gt;
Loop 1 &amp;lt;&amp;lt;LOOP 1&amp;gt;&amp;gt;, residues 206 and 216, has an important role in binding due to a large exposed surface area, high mobility. Loop 2 &amp;lt;&amp;lt;LOOP 2&amp;gt;&amp;gt;, residues 224-233, and Loop 3 &amp;lt;&amp;lt;LOOP 3&amp;gt;&amp;gt;, residues 246-257, are also areas that are involved in binding. LA-2 recognizes OspA Bb, but does not recognize OspA from Bg.and Ba. Between Bb. and Ba. genetic sequences are generally invariant, but two residues change between the species, ALA 208 &amp;lt;&amp;lt;ALA 208&amp;gt;&amp;gt; in Bb. is GLN in Ba., and ASN 251 &amp;lt;&amp;lt;ASN 251&amp;gt;&amp;gt; in Bb. is ALA in Ba.. Bg. has more variation and in addition to the previous two differences, has at least one more difference, where ALA 215 &amp;lt;&amp;lt;ALA 215&amp;gt;&amp;gt; in Bb. is LYS, Bg. sometimes also has a deletion at Bb.’s ALA 208. LA-2 and OspA of Bb. form a tight interface when binding, and the longer GLN sidechain found in Ba. and Bg. is more difficult to accommodate, causing less binding. A chimera that was weakly recognized by LA-2 was made with parts of loop 1 from Bb., and loops 2 and 3 from Bg. 5 Recently, a different kind of chimera has been made which combined the proximal region of Bb. and distal region of Ba., and was able to successfully protect mice from both species. 8&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h3&amp;gt;Reference List of Available Scenes for OspA&amp;lt;/h3&amp;gt;&lt;br /&gt;
&amp;lt;ul&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa_3loopscartoon/3&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Reset model&amp;lt;/scene&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops/4&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Three key loops&amp;lt;/scene&amp;gt; (close up)&amp;lt;/li&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-nor/3&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Three key residues&amp;lt;/scene&amp;gt; (Ala208, Ala215 and Asn251 in &amp;lt;i&amp;gt;B. burgdorferi&amp;lt;/i&amp;gt;, also hides R-groups)&lt;br /&gt;
         &amp;lt;ul&amp;gt;&lt;br /&gt;
           &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-r/2&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Display R-groups&amp;lt;/scene&amp;gt; of Ala208, Ala215 and Asn251&amp;lt;/li&amp;gt;&lt;br /&gt;
         &amp;lt;/ul&amp;gt;&lt;br /&gt;
     &amp;lt;/li&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops3res/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Three loops and all three residues (with R-groups showing)&amp;lt;/scene&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
&amp;lt;/ul&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;&amp;lt;span style=&amp;quot;background:yellow&amp;quot;&amp;gt;In-Prog&amp;lt;/span&amp;gt; References&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;span style=&amp;quot;background:yellow&amp;quot;&amp;gt;&amp;lt;b&amp;gt;Not fully structured yet with -ref- tags, just organizing all reference information for ease&amp;lt;/b&amp;gt;&amp;lt;/span&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;ul&amp;gt;&lt;br /&gt;
&amp;lt;li&amp;gt;1 Connolly, SE and Benach JL. 2005. The Versatile Roles of Antibodies in Borrelia Infections. Microbiology 3: 411-420.&amp;lt;br&amp;gt;&lt;br /&gt;
http://www.nature.com/nrmicro/journal/v3/n5/abs/nrmicro1149.html&amp;lt;br&amp;gt;&lt;br /&gt;
PMID: 15864264&lt;br /&gt;
&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;li&amp;gt;2 Rupprecht T, Koedel U, Fingerle V and Pfister H-W. 2008. The Pathogenesis of Lyme Neuroborreliosis: From Infection to Inflammation. Molecular Medicine 14(3-4): 205-212.&amp;lt;br&amp;gt;&lt;br /&gt;
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2148032/&amp;lt;br&amp;gt;&lt;br /&gt;
PMID: 18097481 &lt;br /&gt;
&amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;li&amp;gt;3 (now 4) Nigrovic L, Thompson K. 2007. Epidemiology and Infection. The Lyme Vaccine: A Cautionary Tale. 135(1)1-8.&amp;lt;br&amp;gt;&lt;br /&gt;
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2870557/&amp;lt;br&amp;gt;&lt;br /&gt;
PMID: 16893489&lt;br /&gt;
&amp;lt;ref name=&amp;quot;nigrovic&amp;quot;&amp;gt;PMID: 16893489&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;li&amp;gt;4 Battisti JM,  Bono JL,  Rosa PA, et al. 2008. Outer Surface Protein A Protects Lyme Disease Spirochetes from Acquired Host Immunity in the Tick Vector. Infect. Immun. 76(11): 5228-5237.&amp;lt;br&amp;gt;&lt;br /&gt;
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2573341/&amp;lt;br&amp;gt;&lt;br /&gt;
PMID: 18779341&lt;br /&gt;
&amp;lt;ref name=&amp;quot;battisti&amp;quot;&amp;gt;PMID: 18779341&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;li&amp;gt;5 (now 3) Ding W, Huang X, Yang X, Dunn J, et al. 2000. Structural Identification of a Key Protective B-Cell Epitope in Lyme Disease Antigen Osp A, Journal of Molecular Biology 302(5): 1153-1164.&amp;lt;br&amp;gt;&lt;br /&gt;
http://www.sciencedirect.com/science/article/pii/S0022283600941196&amp;lt;br&amp;gt;&lt;br /&gt;
PMID: 11183781&lt;br /&gt;
&amp;lt;ref name=&amp;quot;ding&amp;quot;&amp;gt;PMID: 11183781&amp;lt;/ref&amp;gt; &lt;br /&gt;
&lt;br /&gt;
&amp;lt;li&amp;gt;6 Plotkin S. 2011. Clinical Infectious Diseases. Correcting a Public Health Fiasco: The Need for a New Vaccine Against Lyme Disease. 52(3):s721-275.&amp;lt;br&amp;gt;&lt;br /&gt;
http://cid.oxfordjournals.org/content/52/suppl_3/s271.full&amp;lt;br&amp;gt;&lt;br /&gt;
PMID: 21217175&lt;br /&gt;
&amp;lt;ref name=&amp;quot;plotkin&amp;quot;&amp;gt;PMID: 21217175&amp;lt;/ref&amp;gt; &lt;br /&gt;
&lt;br /&gt;
&amp;lt;li&amp;gt;7 Koide? &amp;lt;span style=&amp;quot;background:yellow&amp;quot;&amp;gt;&amp;lt;b&amp;gt;Who used this?&amp;lt;/b&amp;gt;&amp;lt;/span&amp;gt;&amp;lt;br&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;li&amp;gt;8 Livey I, O’Rourke M, Traweger A, Savidis-Dacho H, Crowe B, Barrett P, Yang X, Dunn J, Luft B. 2011. Clinical Infectious Diseases. A new approach to a Lyme Disease Vaccine. 52(3):s266-s270.&amp;lt;br&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;li&amp;gt;9 (now 5) Becker M et al. 2005. Structural Investigation of Borrelia burgdorferi OspB, a BactericidalFab Target. JOURNAL OF BIOLOGICAL CHEMISTRY. 280(17):17363–17370.&amp;lt;br&amp;gt;&lt;br /&gt;
http://www.jbc.org/content/280/17/17363.long&amp;lt;br&amp;gt;&lt;br /&gt;
PMID: 15713683&lt;br /&gt;
&amp;lt;br&amp;gt;&lt;br /&gt;
&amp;lt;/ul&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;References&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;references /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;External Links&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;ul&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://www.who.int/ith/diseases/lyme/en/index.html World Health Organization: Lyme Disease]&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://www.ncbi.nlm.nih.gov/pubmedhealth/PMH0002296/ PubMed Health: Lyme Disease]&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://www.aldf.com/ American Lyme Disease Foundation]&lt;br /&gt;
&amp;lt;/ul&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;Proteopedia Page Contributors and Editors&amp;lt;/h2&amp;gt;&lt;br /&gt;
[http://proteopedia.org/wiki/index.php/User:Kimberly_Slade Kimberly Slade], [http://proteopedia.org/wiki/index.php/User:Cara_Lin Cara Lin], [http://proteopedia.org/wiki/index.php/User:Andrea_Mullen Andrea Mullen], [http://proteopedia.org/wiki/index.php/User:Jenny_Kim_Kim Jenny Kim Kim]&lt;br /&gt;
&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&lt;/div&gt;</summary>
		<author><name>Jenny Kim Kim</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=User:Marvin_O%27Neal/OspA&amp;diff=1384257</id>
		<title>User:Marvin O&#039;Neal/OspA</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=User:Marvin_O%27Neal/OspA&amp;diff=1384257"/>
		<updated>2012-05-02T10:06:17Z</updated>

		<summary type="html">&lt;p&gt;Jenny Kim Kim: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;Structure load=&amp;quot;1fj1&amp;quot; size=&amp;quot;350&amp;quot; frame=&amp;quot;true&amp;quot; align=&amp;quot;right&amp;quot; name=&amp;quot;OspA-secondary&amp;quot; caption=&amp;quot;Outer surface protein A (OspA) ([[1fj1|1FJ1]], chain F) showing secondary structures.&amp;quot; scene=&amp;quot;Studio:G2SecL03/Ospa_default/5&amp;quot;/&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
&amp;lt;b&amp;gt;Outer Surface Protein A (OspA)&amp;lt;/b&amp;gt; &amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;is a major lipoprotein found on the surface of [http://en.wikipedia.org/wiki/Spirochaete spirochetes] from the genus [http://en.wikipedia.org/wiki/Borrelia &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt;] and is comprised of 21 anti-parallel β-strands and a single α-helix. OspA&#039;s expression is regulated at different points in time, from being downregulated during the tick&#039;s feeding process on its host to being upregulated in the host&#039;s cerebrospinal fluid (CSF) to induce inflammatory response, resulting in acute Lyme [http://en.wikipedia.org/wiki/Neuroborreliosis neuroborreliosis]. OspA has also been used as a vector in working towards the development of a vaccine for [http://en.wikipedia.org/wiki/Lyme_disease Lyme disease].&amp;lt;/span&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;b&amp;gt;&amp;lt;SPAN STYLE=&amp;quot;color:red&amp;quot;&amp;gt;NOTE: Red text indicates changes/additions I&#039;ve made and&amp;lt;/span&amp;gt; &amp;lt;SPAN STYLE=&amp;quot;color:black; background:yellow&amp;quot;&amp;gt;this style&amp;lt;/span&amp;gt; &amp;lt;SPAN STYLE=&amp;quot;color:red&amp;quot;&amp;gt;is pertinent thoughts/questions we should consider/address. All of this will be cleaned up for the final submitted page. ~Kim&amp;lt;/span&amp;gt;&amp;lt;/b&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;Introduction&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Lyme disease is caused by the spirochete &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; and spread via hard-bodied ticks belonging to the family [http://en.wikipedia.org/wiki/Ixodidae &amp;lt;i&amp;gt;Ixodidae&amp;lt;/i&amp;gt;]. The &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; spirochetes are motile, helical organisms &amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;have several lipoproteins exposed on the surfaces of their membranes that invoke a response from host immune systems. The predominant group of these is classified as the outer surface proteins (Osps). Both the pathogenesis of Lyme disease as well as the host&#039;s immune response stem from the effects of the spirochete&#039;s presence and involvement in the system.&amp;lt;/span&amp;gt;&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
The major strain of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; in the United States is [http://en.wikipedia.org/wiki/Borrelia_burgdorferi &amp;lt;i&amp;gt;Borrelia burgdorferi&amp;lt;/i&amp;gt;] &amp;lt;i&amp;gt;sensu stricto (Bb.)&amp;lt;/i&amp;gt;, with 20-100 cases of Lyme disease being reported per 100,000 people. In Europe, Lyme disease cases are more prevalent, with 100-130 diagnoses per 100,000 people, but are caused by the spirochetes [http://en.wikipedia.org/wiki/Borrelia_afzelii &amp;lt;i&amp;gt;Borrelia afzelii (Ba.)&amp;lt;/i&amp;gt;] and [http://en.wikipedia.org/wiki/Borrelia_garinii &amp;lt;i&amp;gt;Borrelia garinii (Bg.)&amp;lt;/i&amp;gt;] in addition to &amp;lt;i&amp;gt;B. burgdorferi&amp;lt;/i&amp;gt;.&amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;ding&amp;quot;&amp;gt;PMID: 11183781&amp;lt;/ref&amp;gt; &lt;br /&gt;
&lt;br /&gt;
     &amp;lt;SPAN STYLE=&amp;quot;background:yellow&amp;quot;&amp;gt;&amp;lt;b&amp;gt;Do we want to mention the number of Borrelia strains but the fact that there are only 4 which are infectious to humans? - need a reference though&amp;lt;/b&amp;gt;&amp;lt;/span&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Lyme disease is a debilitating condition that begins with a characteristic bullseye rash known as an [http://en.wikipedia.org/wiki/Erythema_chronicum_migrans erythema migrans (EM)] as well as &amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;the development of lesions on other parts of the body, not just at the site of the tick&#039;s attachment to its host&amp;lt;/span&amp;gt;. Secondary stage symptoms include affecting the heart, joints, and both the central and peripheral nervous systems. &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; have two major outer surface lipoproteins that are involved in Lyme disease: OspA and OspB. OspA is used in adhering to the tick&#039;s gut by binding with the tick receptor (TROSPA) &lt;br /&gt;
&lt;br /&gt;
     &amp;lt;SPAN STYLE=&amp;quot;background:yellow&amp;quot;&amp;gt;&amp;lt;b&amp;gt;Think a blurb about this would be useful- there isn&#039;t a wiki page for easy reference&amp;lt;/b&amp;gt;&amp;lt;/span&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;During feeding, OspA is downregulated in order to evade an immune response from the incoming host blood into the gut, releasing the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; from the gut wall and migrating into the tick&#039;s salivary glands, thereby allowing it to enter the host through the bite. This is evidenced by the fact that patients with Lyme disease have been found to not possess OspA antibodies in the early stages of the disease.&amp;lt;/span&amp;gt;&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt; OspA is the protein most related to acute Lyme neuroborreliosis (LNB), the neurological manifestations of Lyme disease.  &lt;br /&gt;
&lt;br /&gt;
     &amp;lt;SPAN STYLE=&amp;quot;background:yellow&amp;quot;&amp;gt;&amp;lt;b&amp;gt;We mention &amp;quot;two&amp;quot; proteins involved in Lyme Disease and just &#039;name&#039; OspB but we don&#039;t even have a sentence or two about it in this part?&amp;lt;/b&amp;gt;&amp;lt;/span&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;Once inside the host, the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; has a great number of mechanisms available to actively suppress the host&#039;s immune system response and neutralize its effector mechanisms, such as the expression of another outer surface protein, OspC, which prevents susceptibility to the host&#039;s [http://en.wikipedia.org/wiki/Innate_immune_system innate immunity] and [http://en.wikipedia.org/wiki/Complement_system complement systems]. Additionally, &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; is capable of suppressing many of its surface proteins to reduce its detectability, but can also utilize protective means by temporarily expressing them when needed.&amp;lt;/span&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;OspA &amp;amp; Lyme Disease&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Acute Lyme Neuroborreliosis (LNB) is part of the second stage of Lyme disease in which the spirochete invades the peripheral and central nervous systems (CNS). Symptoms of LNB include: Bannwarth’s Syndrome, Lymphocytic Meningitis, and [http://www.rightdiagnosis.com/sym/cranial_neuritis.htm Cranial] and [http://www.ncbi.nlm.nih.gov/pubmedhealth/PMH0001619/ Peripheral Neuritis]. &amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;The presence of OspA in the cerebrospinal fluid (CSF) is responsible for this complex inflammatory response in the brain that leads to the neuroborreliosis.&amp;lt;/span&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
[[Image:G2L03-OspA-mechanism.jpg|thumb|300px|Mechanism of the host inflammatory response to OspA]]&lt;br /&gt;
&lt;br /&gt;
&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;There are six steps involved in the host&#039;s inflammatory response to OspA:&amp;lt;/span&amp;gt; &amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt;&amp;lt;br&amp;gt;&lt;br /&gt;
&amp;lt;ol&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;When the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; enter the host’s CNS they encounter several different types of immune cells such as [http://en.wikipedia.org/wiki/Monocyte monocytes], [http://en.wikipedia.org/wiki/Macrophages macrophages], and [http://en.wikipedia.org/wiki/Dendritic_cells dendritic cells]. While in the CSF, outer surface protein A (OspA) is upregulated and it’s increased expression promotes recognition by a specific receptor on a monocyte.&amp;lt;/span&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;The OspA-bound monocyte then releases proinflammatory [http://en.wikipedia.org/wiki/Cytokine cytokines] (i.e. [http://en.wikipedia.org/wiki/Interferon interferon]), as well as [http://en.wikipedia.org/wiki/Chemokine chemokines], such as [http://en.wikipedia.org/wiki/CXCL13 CXCL13]. In patients with LNB, there is an observed increase in the levels of these cytokines and chemokines in their CSF. The production of chemokines leads to the recruitment of other immune cells to the site of infection.&amp;lt;/span&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;[http://en.wikipedia.org/wiki/B_lymphocyte B-lymphocytes] respond to the new concentration gradient of CXCL13 between the blood and CSF and migrate into the CSF.&amp;lt;/span&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;B-lymphocytes undergo [http://en.wikipedia.org/wiki/Receptor-mediated_endocytosis receptor-mediated endocytosis], consuming the OspA antigens present in the CSF, thereby triggering its activation. The B-lymphocytes then are able to differentiate and mature into  [http://en.wikipedia.org/wiki/Plasma_cells plasma cells].&amp;lt;/span&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;The plasma cells create large quantities of anti-OspA antibodies specific to this strain of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; and release them into the CSF.&amp;lt;/span&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;The anti-OspA antibodies will then bind to the OspA on the spirochete’s membrane, thus killing the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt;.&amp;lt;/span&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
&amp;lt;/ol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;This process is two-sided in the sense that the OspA aids in the pathogenesis of new symptoms (neuroborreliosis) through the chemokine’s actions, as well as initiating the signaling cascade to destroy itself.&amp;lt;/span&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;OspA Vaccination&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Risk of developing Lyme disease can be &amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;mitigated&amp;lt;/span&amp;gt; by staying clear of areas with populations of ticks, wearing proper attire &amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;to minimize easily bitten areas of the body&amp;lt;/span&amp;gt;, and using &amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;insect repellents containing&amp;lt;/span&amp;gt; [http://en.wikipedia.org/wiki/DEET DEET] (N,N-diethy-m-toluamide). However, &amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;another effective means for prevention could be possible&amp;lt;/span&amp;gt; by using an outer surface protein from &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; &amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;in the development of&amp;lt;/span&amp;gt; a vaccine.&amp;lt;ref name=&amp;quot;nigrovic&amp;quot;&amp;gt;PMID: 16893489&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;The membrane composition of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; is abundant in both OspA and OspB, and the two proteins share a 53% similarity in their primary sequences. Both are also expressed in the tick&#039;s gut and downregulated during feeding and aid in its survivability; however, OspA is overall less varied and reactive than OspB, which has much more variability.&amp;lt;ref name=&amp;quot;becker&amp;quot;&amp;gt;PMID: 15713683&amp;lt;/ref&amp;gt; The relatively conserved sequence of OspA thus better lends itself to study than that of OspB and applications toward the development of a vaccine for Lyme disease for a broader range of strains. The first vaccine developed used a purified recombinant form of OspA and functioned in blocking transmission of the spirochetes from tick to host during feeding, killing them while still attached in the tick&#039;s gut.&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;battisti&amp;quot;&amp;gt;PMID: 18779341&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/span&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
The first vaccine against B. burgorferi sensu stricto was created targeting the OspA strain successfully 2 However this vaccine is unique in that it only works while Borrelia are still in the gut expressing OspA. (Ding) LYMErix, was discontinued in 2002 due to various weaknesses of the vaccine including its &amp;lt;80% efficacy, requirement for 3 doses, lack of data concerning the effects of the vaccine on children, and limitation of protection to the North American species of Borrelia. 6 To address this problem of international protection it would be helpful to create a chimera, mixing the OspA of different species. In order to do this the epitope of OspA should be studied. LA-2 &amp;lt;&amp;lt;SHOW FAB HIGHLIGHTED ON 1FJ1&amp;gt;&amp;gt; is a murine monoclonal antibody that binds strongly &amp;lt;&amp;lt;SHOW INTERACTION HIGHLIGHTED (ZOOMED IN) ON 1FJ1&amp;gt;&amp;gt; to OspA &amp;lt;&amp;lt;SHOW OSPA HIGHLIGHTED ON 1FJ1&amp;gt;&amp;gt;, and how effective a vaccine is correlated with LA-2 binding. 5&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;Structure of OspA&amp;lt;/h2&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;Structure load=&amp;quot;1fj1&amp;quot; size=&amp;quot;350&amp;quot; frame=&amp;quot;true&amp;quot; align=&amp;quot;right&amp;quot; name=&amp;quot;OspA-manip&amp;quot; caption=&amp;quot;Outer surface protein A (OspA) ([[1fj1|1FJ1]], chain F)&amp;quot; scene=&amp;quot;Studio:G2SecL03/Ospa_3loopscartoon/3&amp;quot;/&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
OspA is made of 21 anti-parallel β-strands and a single α-helix. 5 OspA is unique due to its dumbbell shape that contains two globular domains connected by a single layer β-sheet. 7 There are &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops/4&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;three key loops&amp;lt;/scene&amp;gt; located at the C-terminus that are important in binding, and &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-nor/3&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt; three residues that are unconserved between different strains&amp;lt;/scene&amp;gt;  &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-r/2&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;(toggle residue R-groups)&amp;lt;/scene&amp;gt; &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops3res/1&#039;&amp;gt;Three loops and three residues (with R-groups showing)&amp;lt;/scene&amp;gt;. &lt;br /&gt;
&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&lt;br /&gt;
Loop 1 &amp;lt;&amp;lt;LOOP 1&amp;gt;&amp;gt;, residues 206 and 216, has an important role in binding due to a large exposed surface area, high mobility. Loop 2 &amp;lt;&amp;lt;LOOP 2&amp;gt;&amp;gt;, residues 224-233, and Loop 3 &amp;lt;&amp;lt;LOOP 3&amp;gt;&amp;gt;, residues 246-257, are also areas that are involved in binding. LA-2 recognizes OspA Bb, but does not recognize OspA from Bg.and Ba. Between Bb. and Ba. genetic sequences are generally invariant, but two residues change between the species, ALA 208 &amp;lt;&amp;lt;ALA 208&amp;gt;&amp;gt; in Bb. is GLN in Ba., and ASN 251 &amp;lt;&amp;lt;ASN 251&amp;gt;&amp;gt; in Bb. is ALA in Ba.. Bg. has more variation and in addition to the previous two differences, has at least one more difference, where ALA 215 &amp;lt;&amp;lt;ALA 215&amp;gt;&amp;gt; in Bb. is LYS, Bg. sometimes also has a deletion at Bb.’s ALA 208. LA-2 and OspA of Bb. form a tight interface when binding, and the longer GLN sidechain found in Ba. and Bg. is more difficult to accommodate, causing less binding. A chimera that was weakly recognized by LA-2 was made with parts of loop 1 from Bb., and loops 2 and 3 from Bg. 5 Recently, a different kind of chimera has been made which combined the proximal region of Bb. and distal region of Ba., and was able to successfully protect mice from both species. 8&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h3&amp;gt;Reference List of Available Scenes for OspA&amp;lt;/h3&amp;gt;&lt;br /&gt;
&amp;lt;ul&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa_3loopscartoon/3&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Reset model&amp;lt;/scene&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops/4&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Three key loops&amp;lt;/scene&amp;gt; (close up)&amp;lt;/li&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-nor/3&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Three key residues&amp;lt;/scene&amp;gt; (Ala208, Ala215 and Asn251 in &amp;lt;i&amp;gt;B. burgdorferi&amp;lt;/i&amp;gt;, also hides R-groups)&lt;br /&gt;
         &amp;lt;ul&amp;gt;&lt;br /&gt;
           &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-r/2&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Display R-groups&amp;lt;/scene&amp;gt; of Ala208, Ala215 and Asn251&amp;lt;/li&amp;gt;&lt;br /&gt;
         &amp;lt;/ul&amp;gt;&lt;br /&gt;
     &amp;lt;/li&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops3res/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Three loops and all three residues (with R-groups showing)&amp;lt;/scene&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
&amp;lt;/ul&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;&amp;lt;span style=&amp;quot;background:yellow&amp;quot;&amp;gt;In-Prog&amp;lt;/span&amp;gt; References&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;span style=&amp;quot;background:yellow&amp;quot;&amp;gt;&amp;lt;b&amp;gt;Not fully structured yet with -ref- tags, just organizing all reference information for ease&amp;lt;/b&amp;gt;&amp;lt;/span&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;ul&amp;gt;&lt;br /&gt;
&amp;lt;li&amp;gt;1 Connolly, SE and Benach JL. 2005. The Versatile Roles of Antibodies in Borrelia Infections. Microbiology 3: 411-420.&amp;lt;br&amp;gt;&lt;br /&gt;
http://www.nature.com/nrmicro/journal/v3/n5/abs/nrmicro1149.html&amp;lt;br&amp;gt;&lt;br /&gt;
PMID: 15864264&lt;br /&gt;
&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;li&amp;gt;2 Rupprecht T, Koedel U, Fingerle V and Pfister H-W. 2008. The Pathogenesis of Lyme Neuroborreliosis: From Infection to Inflammation. Molecular Medicine 14(3-4): 205-212.&amp;lt;br&amp;gt;&lt;br /&gt;
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2148032/&amp;lt;br&amp;gt;&lt;br /&gt;
PMID: 18097481 &lt;br /&gt;
&amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;li&amp;gt;3 (now 4) Nigrovic L, Thompson K. 2007. Epidemiology and Infection. The Lyme Vaccine: A Cautionary Tale. 135(1)1-8.&amp;lt;br&amp;gt;&lt;br /&gt;
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2870557/&amp;lt;br&amp;gt;&lt;br /&gt;
PMID: 16893489&lt;br /&gt;
&amp;lt;ref name=&amp;quot;nigrovic&amp;quot;&amp;gt;PMID: 16893489&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;li&amp;gt;4 Battisti JM,  Bono JL,  Rosa PA, et al. 2008. Outer Surface Protein A Protects Lyme Disease Spirochetes from Acquired Host Immunity in the Tick Vector. Infect. Immun. 76(11): 5228-5237.&amp;lt;br&amp;gt;&lt;br /&gt;
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2573341/&amp;lt;br&amp;gt;&lt;br /&gt;
PMID: 18779341&lt;br /&gt;
&amp;lt;ref name=&amp;quot;battisti&amp;quot;&amp;gt;PMID: 18779341&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;li&amp;gt;5 (now 3) Ding W, Huang X, Yang X, Dunn J, et al. 2000. Structural Identification of a Key Protective B-Cell Epitope in Lyme Disease Antigen Osp A, Journal of Molecular Biology 302(5): 1153-1164.&amp;lt;br&amp;gt;&lt;br /&gt;
http://www.sciencedirect.com/science/article/pii/S0022283600941196&amp;lt;br&amp;gt;&lt;br /&gt;
PMID: 11183781&lt;br /&gt;
&amp;lt;ref name=&amp;quot;ding&amp;quot;&amp;gt;PMID: 11183781&amp;lt;/ref&amp;gt; &lt;br /&gt;
&lt;br /&gt;
&amp;lt;li&amp;gt;6 Plotkin S. 2011. Clinical Infectious Diseases. Correcting a Public Health Fiasco: The Need for a New Vaccine Against Lyme Disease. 52(3):s721-275.&amp;lt;br&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;li&amp;gt;7 Koide? &amp;lt;span style=&amp;quot;background:yellow&amp;quot;&amp;gt;&amp;lt;b&amp;gt;Who used this?&amp;lt;/b&amp;gt;&amp;lt;/span&amp;gt;&amp;lt;br&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;li&amp;gt;8 Livey I, O’Rourke M, Traweger A, Savidis-Dacho H, Crowe B, Barrett P, Yang X, Dunn J, Luft B. 2011. Clinical Infectious Diseases. A new approach to a Lyme Disease Vaccine. 52(3):s266-s270.&amp;lt;br&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;li&amp;gt;9 (now 5) Becker M et al. 2005. Structural Investigation of Borrelia burgdorferi OspB, a BactericidalFab Target. JOURNAL OF BIOLOGICAL CHEMISTRY. 280(17):17363–17370.&amp;lt;br&amp;gt;&lt;br /&gt;
http://www.jbc.org/content/280/17/17363.long&amp;lt;br&amp;gt;&lt;br /&gt;
PMID: 15713683&lt;br /&gt;
&amp;lt;br&amp;gt;&lt;br /&gt;
&amp;lt;/ul&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;References&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;references /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;External Links&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;ul&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://www.who.int/ith/diseases/lyme/en/index.html World Health Organization: Lyme Disease]&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://www.ncbi.nlm.nih.gov/pubmedhealth/PMH0002296/ PubMed Health: Lyme Disease]&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://www.aldf.com/ American Lyme Disease Foundation]&lt;br /&gt;
&amp;lt;/ul&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;Proteopedia Page Contributors and Editors&amp;lt;/h2&amp;gt;&lt;br /&gt;
[http://proteopedia.org/wiki/index.php/User:Kimberly_Slade Kimberly Slade], [http://proteopedia.org/wiki/index.php/User:Cara_Lin Cara Lin], [http://proteopedia.org/wiki/index.php/User:Andrea_Mullen Andrea Mullen], [http://proteopedia.org/wiki/index.php/User:Jenny_Kim_Kim Jenny Kim Kim]&lt;br /&gt;
&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&lt;/div&gt;</summary>
		<author><name>Jenny Kim Kim</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=User:Marvin_O%27Neal/OspA&amp;diff=1384248</id>
		<title>User:Marvin O&#039;Neal/OspA</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=User:Marvin_O%27Neal/OspA&amp;diff=1384248"/>
		<updated>2012-05-02T09:39:51Z</updated>

		<summary type="html">&lt;p&gt;Jenny Kim Kim: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;Structure load=&amp;quot;1fj1&amp;quot; size=&amp;quot;350&amp;quot; frame=&amp;quot;true&amp;quot; align=&amp;quot;right&amp;quot; name=&amp;quot;OspA-secondary&amp;quot; caption=&amp;quot;Outer surface protein A (OspA) ([[1fj1|1FJ1]], chain F) showing secondary structures.&amp;quot; scene=&amp;quot;Studio:G2SecL03/Ospa_default/5&amp;quot;/&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
&amp;lt;b&amp;gt;Outer Surface Protein A (OspA)&amp;lt;/b&amp;gt; &amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;is a major lipoprotein found on the surface of [http://en.wikipedia.org/wiki/Spirochaete spirochetes] from the genus [http://en.wikipedia.org/wiki/Borrelia &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt;] and is comprised of 21 anti-parallel β-strands and a single α-helix. OspA&#039;s expression is regulated at different points in time, from being downregulated during the tick&#039;s feeding process on its host to being upregulated in the host&#039;s cerebrospinal fluid (CSF) to induce inflammatory response, resulting in acute Lyme [http://en.wikipedia.org/wiki/Neuroborreliosis neuroborreliosis]. OspA has also been used as a vector in working towards the development of a vaccine for [http://en.wikipedia.org/wiki/Lyme_disease Lyme disease].&amp;lt;/span&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;b&amp;gt;&amp;lt;SPAN STYLE=&amp;quot;color:red&amp;quot;&amp;gt;NOTE: Red text indicates changes/additions I&#039;ve made and&amp;lt;/span&amp;gt; &amp;lt;SPAN STYLE=&amp;quot;color:black; background:yellow&amp;quot;&amp;gt;this style&amp;lt;/span&amp;gt; &amp;lt;SPAN STYLE=&amp;quot;color:red&amp;quot;&amp;gt;is pertinent thoughts/questions we should consider/address. All of this will be cleaned up for the final submitted page. ~Kim&amp;lt;/span&amp;gt;&amp;lt;/b&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;Introduction&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Lyme disease is caused by the spirochete &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; and spread via hard-bodied ticks belonging to the family [http://en.wikipedia.org/wiki/Ixodidae &amp;lt;i&amp;gt;Ixodidae&amp;lt;/i&amp;gt;]. The &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; spirochetes are motile, helical organisms &amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;have several lipoproteins exposed on the surfaces of their membranes that invoke a response from host immune systems. The predominant group of these is classified as the outer surface proteins (Osps). Both the pathogenesis of Lyme disease as well as the host&#039;s immune response stem from the effects of the spirochete&#039;s presence and involvement in the system.&amp;lt;/span&amp;gt;&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
The major strain of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; in the United States is [http://en.wikipedia.org/wiki/Borrelia_burgdorferi &amp;lt;i&amp;gt;Borrelia burgdorferi&amp;lt;/i&amp;gt;] &amp;lt;i&amp;gt;sensu stricto (Bb.)&amp;lt;/i&amp;gt;, with 20-100 cases of Lyme disease being reported per 100,000 people. In Europe, Lyme disease cases are more prevalent, with 100-130 diagnoses per 100,000 people, but are caused by the spirochetes [http://en.wikipedia.org/wiki/Borrelia_afzelii &amp;lt;i&amp;gt;Borrelia afzelii (Ba.)&amp;lt;/i&amp;gt;] and [http://en.wikipedia.org/wiki/Borrelia_garinii &amp;lt;i&amp;gt;Borrelia garinii (Bg.)&amp;lt;/i&amp;gt;] in addition to &amp;lt;i&amp;gt;B. burgdorferi&amp;lt;/i&amp;gt;.&amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;ding&amp;quot;&amp;gt;PMID: 11183781&amp;lt;/ref&amp;gt; &lt;br /&gt;
&lt;br /&gt;
     &amp;lt;SPAN STYLE=&amp;quot;background:yellow&amp;quot;&amp;gt;&amp;lt;b&amp;gt;Do we want to mention the number of Borrelia strains but the fact that there are only 4 which are infectious to humans? - need a reference though&amp;lt;/b&amp;gt;&amp;lt;/span&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Lyme disease is a debilitating condition that begins with a characteristic bullseye rash known as an [http://en.wikipedia.org/wiki/Erythema_chronicum_migrans erythema migrans (EM)] as well as &amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;the development of lesions on other parts of the body, not just at the site of the tick&#039;s attachment to its host&amp;lt;/span&amp;gt;. Secondary stage symptoms include affecting the heart, joints, and both the central and peripheral nervous systems. &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; have two major outer surface lipoproteins that are involved in Lyme disease: OspA and OspB. OspA is used in adhering to the tick&#039;s gut by binding with the tick receptor (TROSPA) &lt;br /&gt;
&lt;br /&gt;
     &amp;lt;SPAN STYLE=&amp;quot;background:yellow&amp;quot;&amp;gt;&amp;lt;b&amp;gt;Think a blurb about this would be useful- there isn&#039;t a wiki page for easy reference&amp;lt;/b&amp;gt;&amp;lt;/span&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;During feeding, OspA is downregulated in order to evade an immune response from the incoming host blood into the gut, releasing the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; from the gut wall and migrating into the tick&#039;s salivary glands, thereby allowing it to enter the host through the bite. This is evidenced by the fact that patients with Lyme disease have been found to not possess OspA antibodies in the early stages of the disease.&amp;lt;/span&amp;gt;&amp;lt;ref name=&amp;quot;connolly&amp;quot;&amp;gt;PMID: 15864264&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt; OspA is the protein most related to acute Lyme neuroborreliosis (LNB), the neurological manifestations of Lyme disease.  &lt;br /&gt;
&lt;br /&gt;
     &amp;lt;SPAN STYLE=&amp;quot;background:yellow&amp;quot;&amp;gt;&amp;lt;b&amp;gt;We mention &amp;quot;two&amp;quot; proteins involved in Lyme Disease and just &#039;name&#039; OspB but we don&#039;t even have a sentence or two about it in this part?&amp;lt;/b&amp;gt;&amp;lt;/span&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;Once inside the host, the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; has a great number of mechanisms available to actively suppress the host&#039;s immune system response and neutralize its effector mechanisms, such as the expression of another outer surface protein, OspC, which prevents susceptibility to the host&#039;s [http://en.wikipedia.org/wiki/Innate_immune_system innate immunity] and [http://en.wikipedia.org/wiki/Complement_system complement systems]. Additionally, &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; is capable of suppressing many of its surface proteins to reduce its detectability, but can also utilize protective means by temporarily expressing them when needed.&amp;lt;/span&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;OspA &amp;amp; Lyme Disease&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Acute Lyme Neuroborreliosis (LNB) is part of the second stage of Lyme disease in which the spirochete invades the peripheral and central nervous systems (CNS). Symptoms of LNB include: Bannwarth’s Syndrome, Lymphocytic Meningitis, and [http://www.rightdiagnosis.com/sym/cranial_neuritis.htm Cranial] and [http://www.ncbi.nlm.nih.gov/pubmedhealth/PMH0001619/ Peripheral Neuritis]. &amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;The presence of OspA in the cerebrospinal fluid (CSF) is responsible for this complex inflammatory response in the brain that leads to the neuroborreliosis.&amp;lt;/span&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
[[Image:G2L03-OspA-mechanism.jpg|thumb|300px|Mechanism of the host inflammatory response to OspA]]&lt;br /&gt;
&lt;br /&gt;
&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;There are six steps involved in the host&#039;s inflammatory response to OspA:&amp;lt;/span&amp;gt; &amp;lt;ref name=&amp;quot;rupprecht&amp;quot;&amp;gt;PMID: 18097481&amp;lt;/ref&amp;gt;&amp;lt;br&amp;gt;&lt;br /&gt;
&amp;lt;ol&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;When the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; enter the host’s CNS they encounter several different types of immune cells such as [http://en.wikipedia.org/wiki/Monocyte monocytes], [http://en.wikipedia.org/wiki/Macrophages macrophages], and [http://en.wikipedia.org/wiki/Dendritic_cells dendritic cells]. While in the CSF, outer surface protein A (OspA) is upregulated and it’s increased expression promotes recognition by a specific receptor on a monocyte.&amp;lt;/span&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;The OspA-bound monocyte then releases proinflammatory [http://en.wikipedia.org/wiki/Cytokine cytokines] (i.e. [http://en.wikipedia.org/wiki/Interferon interferon]), as well as [http://en.wikipedia.org/wiki/Chemokine chemokines], such as [http://en.wikipedia.org/wiki/CXCL13 CXCL13]. In patients with LNB, there is an observed increase in the levels of these cytokines and chemokines in their CSF. The production of chemokines leads to the recruitment of other immune cells to the site of infection.&amp;lt;/span&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;[http://en.wikipedia.org/wiki/B_lymphocyte B-lymphocytes] respond to the new concentration gradient of CXCL13 between the blood and CSF and migrate into the CSF.&amp;lt;/span&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;B-lymphocytes undergo [http://en.wikipedia.org/wiki/Receptor-mediated_endocytosis receptor-mediated endocytosis], consuming the OspA antigens present in the CSF, thereby triggering its activation. The B-lymphocytes then are able to differentiate and mature into  [http://en.wikipedia.org/wiki/Plasma_cells plasma cells].&amp;lt;/span&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;The plasma cells create large quantities of anti-OspA antibodies specific to this strain of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; and release them into the CSF.&amp;lt;/span&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;The anti-OspA antibodies will then bind to the OspA on the spirochete’s membrane, thus killing the &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt;.&amp;lt;/span&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
&amp;lt;/ol&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;This process is two-sided in the sense that the OspA aids in the pathogenesis of new symptoms (neuroborreliosis) through the chemokine’s actions, as well as initiating the signaling cascade to destroy itself.&amp;lt;/span&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;OspA Vaccination&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
Risk of developing Lyme disease can be &amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;mitigated&amp;lt;/span&amp;gt; by staying clear of areas with populations of ticks, wearing proper attire &amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;to minimize easily bitten areas of the body&amp;lt;/span&amp;gt;, and using &amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;insect repellents containing&amp;lt;/span&amp;gt; [http://en.wikipedia.org/wiki/DEET DEET] (N,N-diethy-m-toluamide). However, &amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;another effective means for prevention could be possible&amp;lt;/span&amp;gt; by using an outer surface protein from &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; &amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;in the development of&amp;lt;/span&amp;gt; a vaccine &amp;lt;del&amp;gt;could also be an effective measure&amp;lt;/del&amp;gt;.&amp;lt;ref name=&amp;quot;nigrovic&amp;quot;&amp;gt;PMID: 16893489&amp;lt;/ref&amp;gt;&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
&amp;lt;span style=&amp;quot;color:red&amp;quot;&amp;gt;The membrane composition of &amp;lt;i&amp;gt;Borrelia&amp;lt;/i&amp;gt; is abundant in both OspA and OspB, and the two proteins share a 53% similarity in their primary sequences. Both are also expressed in the tick&#039;s gut and downregulated during feeding and aid in its survivability; however, OspA is overall less varied and reactive than OspB, which has much more variability.&amp;lt;ref name=&amp;quot;becker&amp;quot;&amp;gt;PMID: 15713683&amp;lt;/ref&amp;gt;  &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/span&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
However OspA is more studied than OspB, and many studies related to OspA structure are developing and creating to make efficient vaccine against other Lyme diseases 4. The first vaccine against B. burgorferi sensu stricto was created targeting the OspA strain successfully 2 However this vaccine is unique in that it only works while Borrelia are still in the gut expressing OspA. (Ding) LYMErix, was discontinued in 2002 due to various weaknesses of the vaccine including its &amp;lt;80% efficacy, requirement for 3 doses, lack of data concerning the effects of the vaccine on children, and limitation of protection to the North American species of Borrelia. 6 To address this problem of international protection it would be helpful to create a chimera, mixing the OspA of different species. In order to do this the epitope of OspA should be studied. LA-2 &amp;lt;&amp;lt;SHOW FAB HIGHLIGHTED ON 1FJ1&amp;gt;&amp;gt; is a murine monoclonal antibody that binds strongly &amp;lt;&amp;lt;SHOW INTERACTION HIGHLIGHTED (ZOOMED IN) ON 1FJ1&amp;gt;&amp;gt; to OspA &amp;lt;&amp;lt;SHOW OSPA HIGHLIGHTED ON 1FJ1&amp;gt;&amp;gt;, and how effective a vaccine is correlated with LA-2 binding. 5&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;Structure of OspA&amp;lt;/h2&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;Structure load=&amp;quot;1fj1&amp;quot; size=&amp;quot;350&amp;quot; frame=&amp;quot;true&amp;quot; align=&amp;quot;right&amp;quot; name=&amp;quot;OspA-manip&amp;quot; caption=&amp;quot;Outer surface protein A (OspA) ([[1fj1|1FJ1]], chain F)&amp;quot; scene=&amp;quot;Studio:G2SecL03/Ospa_3loopscartoon/3&amp;quot;/&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;p&amp;gt;&lt;br /&gt;
OspA is made of 21 anti-parallel β-strands and a single α-helix. 5 OspA is unique due to its dumbbell shape that contains two globular domains connected by a single layer β-sheet. 7 There are &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops/4&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;three key loops&amp;lt;/scene&amp;gt; located at the C-terminus that are important in binding, and &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-nor/3&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt; three residues that are unconserved between different strains&amp;lt;/scene&amp;gt;  &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-r/2&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;(toggle residue R-groups)&amp;lt;/scene&amp;gt; &amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops3res/1&#039;&amp;gt;Three loops and three residues (with R-groups showing)&amp;lt;/scene&amp;gt;. &lt;br /&gt;
&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&lt;br /&gt;
Loop 1 &amp;lt;&amp;lt;LOOP 1&amp;gt;&amp;gt;, residues 206 and 216, has an important role in binding due to a large exposed surface area, high mobility. Loop 2 &amp;lt;&amp;lt;LOOP 2&amp;gt;&amp;gt;, residues 224-233, and Loop 3 &amp;lt;&amp;lt;LOOP 3&amp;gt;&amp;gt;, residues 246-257, are also areas that are involved in binding. LA-2 recognizes OspA Bb, but does not recognize OspA from Bg.and Ba. Between Bb. and Ba. genetic sequences are generally invariant, but two residues change between the species, ALA 208 &amp;lt;&amp;lt;ALA 208&amp;gt;&amp;gt; in Bb. is GLN in Ba., and ASN 251 &amp;lt;&amp;lt;ASN 251&amp;gt;&amp;gt; in Bb. is ALA in Ba.. Bg. has more variation and in addition to the previous two differences, has at least one more difference, where ALA 215 &amp;lt;&amp;lt;ALA 215&amp;gt;&amp;gt; in Bb. is LYS, Bg. sometimes also has a deletion at Bb.’s ALA 208. LA-2 and OspA of Bb. form a tight interface when binding, and the longer GLN sidechain found in Ba. and Bg. is more difficult to accommodate, causing less binding. A chimera that was weakly recognized by LA-2 was made with parts of loop 1 from Bb., and loops 2 and 3 from Bg. 5 Recently, a different kind of chimera has been made which combined the proximal region of Bb. and distal region of Ba., and was able to successfully protect mice from both species. 8&lt;br /&gt;
&amp;lt;/p&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h3&amp;gt;Reference List of Available Scenes for OspA&amp;lt;/h3&amp;gt;&lt;br /&gt;
&amp;lt;ul&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa_3loopscartoon/3&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Reset model&amp;lt;/scene&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops/4&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Three key loops&amp;lt;/scene&amp;gt; (close up)&amp;lt;/li&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-nor/3&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Three key residues&amp;lt;/scene&amp;gt; (Ala208, Ala215 and Asn251 in &amp;lt;i&amp;gt;B. burgdorferi&amp;lt;/i&amp;gt;, also hides R-groups)&lt;br /&gt;
         &amp;lt;ul&amp;gt;&lt;br /&gt;
           &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3residues-r/2&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Display R-groups&amp;lt;/scene&amp;gt; of Ala208, Ala215 and Asn251&amp;lt;/li&amp;gt;&lt;br /&gt;
         &amp;lt;/ul&amp;gt;&lt;br /&gt;
     &amp;lt;/li&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;&amp;lt;scene name=&#039;Studio:G2SecL03/Ospa-3loops3res/1&#039; target=&amp;quot;OspA-manip&amp;quot;&amp;gt;Three loops and all three residues (with R-groups showing)&amp;lt;/scene&amp;gt;&amp;lt;/li&amp;gt;&lt;br /&gt;
&amp;lt;/ul&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;&amp;lt;span style=&amp;quot;background:yellow&amp;quot;&amp;gt;In-Prog&amp;lt;/span&amp;gt; References&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;span style=&amp;quot;background:yellow&amp;quot;&amp;gt;&amp;lt;b&amp;gt;Not fully structured yet with -ref- tags, just organizing all reference information for ease&amp;lt;/b&amp;gt;&amp;lt;/span&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;ul&amp;gt;&lt;br /&gt;
&amp;lt;li&amp;gt;1 Connolly, SE and Benach JL. 2005. The Versatile Roles of Antibodies in Borrelia Infections. Microbiology 3: 411-420.&amp;lt;br&amp;gt;&lt;br /&gt;
http://www.nature.com/nrmicro/journal/v3/n5/abs/nrmicro1149.html&amp;lt;br&amp;gt;&lt;br /&gt;
PMID: 15864264&lt;br /&gt;
&lt;br /&gt;
&amp;lt;li&amp;gt;2 Rupprecht T, Koedel U, Fingerle V and Pfister H-W. 2008. The Pathogenesis of Lyme Neuroborreliosis: From Infection to Inflammation. Molecular Medicine 14(3-4): 205-212.&amp;lt;br&amp;gt;&lt;br /&gt;
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2148032/&amp;lt;br&amp;gt;&lt;br /&gt;
PMID: 18097481 &lt;br /&gt;
&lt;br /&gt;
&amp;lt;li&amp;gt;3 (now 4) Nigrovic L, Thompson K. 2007. Epidemiology and Infection. The Lyme Vaccine: A Cautionary Tale. 135(1)1-8.&amp;lt;br&amp;gt;&lt;br /&gt;
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2870557/&amp;lt;br&amp;gt;&lt;br /&gt;
PMID: 16893489&lt;br /&gt;
&lt;br /&gt;
&amp;lt;li&amp;gt;4 Battisti JM,  Bono JL,  Rosa PA, et al. 2008. Outer Surface Protein A Protects Lyme Disease Spirochetes from Acquired Host Immunity in the Tick Vector. Infect. Immun. 76(11): 5228-5237.&amp;lt;br&amp;gt;&lt;br /&gt;
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2573341/&amp;lt;br&amp;gt;&lt;br /&gt;
PMID: 18779341&lt;br /&gt;
&lt;br /&gt;
&amp;lt;li&amp;gt;5 (now 3) Ding W, Huang X, Yang X, Dunn J, et al. 2000. Structural Identification of a Key Protective B-Cell Epitope in Lyme Disease Antigen Osp A, Journal of Molecular Biology 302(5): 1153-1164.&amp;lt;br&amp;gt;&lt;br /&gt;
http://www.sciencedirect.com/science/article/pii/S0022283600941196&amp;lt;br&amp;gt;&lt;br /&gt;
PMID: 11183781&lt;br /&gt;
&lt;br /&gt;
&amp;lt;li&amp;gt;6 Plotkin S. 2011. Clinical Infectious Diseases. Correcting a Public Health Fiasco: The Need for a New Vaccine Against Lyme Disease. 52(3):s721-275.&amp;lt;br&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;li&amp;gt;7 Koide? &amp;lt;span style=&amp;quot;background:yellow&amp;quot;&amp;gt;&amp;lt;b&amp;gt;Who used this?&amp;lt;/b&amp;gt;&amp;lt;/span&amp;gt;&amp;lt;br&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;li&amp;gt;8 Livey I, O’Rourke M, Traweger A, Savidis-Dacho H, Crowe B, Barrett P, Yang X, Dunn J, Luft B. 2011. Clinical Infectious Diseases. A new approach to a Lyme Disease Vaccine. 52(3):s266-s270.&amp;lt;br&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;li&amp;gt;9 (now 5) Becker M et al. 2005. Structural Investigation of Borrelia burgdorferi OspB, a BactericidalFab Target. JOURNAL OF BIOLOGICAL CHEMISTRY. 280(17):17363–17370.&amp;lt;br&amp;gt;&lt;br /&gt;
http://www.jbc.org/content/280/17/17363.long&amp;lt;br&amp;gt;&lt;br /&gt;
PMID: 15713683&lt;br /&gt;
&amp;lt;br&amp;gt;&lt;br /&gt;
&amp;lt;/ul&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;References&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;references /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;External Links&amp;lt;/h2&amp;gt;&lt;br /&gt;
&amp;lt;ul&amp;gt;&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://www.who.int/ith/diseases/lyme/en/index.html World Health Organization: Lyme Disease]&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://www.ncbi.nlm.nih.gov/pubmedhealth/PMH0002296/ PubMed Health: Lyme Disease]&lt;br /&gt;
     &amp;lt;li&amp;gt;[http://www.aldf.com/ American Lyme Disease Foundation]&lt;br /&gt;
&amp;lt;/ul&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;h2&amp;gt;Proteopedia Page Contributors and Editors&amp;lt;/h2&amp;gt;&lt;br /&gt;
[http://proteopedia.org/wiki/index.php/User:Kimberly_Slade Kimberly Slade], [http://proteopedia.org/wiki/index.php/User:Cara_Lin Cara Lin], [http://proteopedia.org/wiki/index.php/User:Andrea_Mullen Andrea Mullen], [http://proteopedia.org/wiki/index.php/User:Jenny_Kim_Kim Jenny Kim Kim]&lt;br /&gt;
&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&lt;/div&gt;</summary>
		<author><name>Jenny Kim Kim</name></author>
	</entry>
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