Proteopedia - User contributions [en]

User:John S. de Banzie/RNAHairpinLoop

2017-01-30T15:59:34Z

John S. de Banzie:

==RNA Stem and Loop Structure==
<StructureSection load='2qh2' size='400' side='right' caption='RNA hairpin loop from human telomerase RNA, [[2qh2]]' scene='59/590622/2qh2stick/3'>
Intramolecular hydrogen bonding in RNA molecules results in the formation of stem and loop structures (also known as hairpin loops).

RNA in the stem of a stem and loop structure forms a double stranded <scene name='59/590622/2qh2stickends/1'>antiparallel</scene> right-handed helix with <scene name='59/590622/2qh2spacefill/1'>major and minor grooves</scene>. However this double helix is not the same as that of [[DNA]]. The most obvious difference is in the tilt of the bases, but there are also differences in the diameter and pitch of the helix<ref>Berg JM, Tymoczko JL, Stryer L. Biochemistry. 5th edition. New York: W H Freeman; 2002. Section 27.1, DNA Can Assume a Variety of Structural Forms. Available from: http://www.ncbi.nlm.nih.gov/books/NBK22585/</ref>.

The RNA shown is 24 nucleotides long. Nucleotides 1 through 8 and 17 through 24 form the stem and nucleotides 9 through 16 form the loop. Note the <scene name='59/590622/2qh2bases/2'>complementary base pairing</scene> in the stem (A: red, C: green, G: orange, U: blue) and the unpaired bases in the loop (white).

(The stem and loop structure shown is part of the RNA in human telomerase. Telomerase protects chromosomes by restoring DNA that is lost from the ends during DNA replication. The RNA is used as a template and the enzyme is thus an internally-templated RNA-dependant DNA polymerase<ref>Berg JM, Tymoczko JL, Stryer L. Biochemistry. 5th edition. New York: W H Freeman; 2002. Section 27.4, DNA Replication of Both Strands Proceeds Rapidly from Specific Start Sites. Available from: http://www.ncbi.nlm.nih.gov/books/NBK22587/</ref>.)

</StructureSection>
== References ==
<references/>

User:John S. de Banzie/U456snRNP

2016-03-18T18:49:04Z

John S. de Banzie: New page: ==Yeast U4/U6.U5 tri-snRNP== <StructureSection load='5gan' size='640' side='right' caption='U4/U6.U5 snRNP' 5gan' scene='72/726441/Firstscene/2'> The <scene name='72/726441/Firstscene/...

==Yeast U4/U6.U5 tri-snRNP==
<StructureSection load='5gan' size='640' side='right' caption='U4/U6.U5 snRNP' [[5gan]]' scene='72/726441/Firstscene/2'>
The <scene name='72/726441/Firstscene/2'>initial view</scene> shows proteins in white and the three snRNAs in colour (U4: orange, U5: red, and U6: purple).

Focusing <scene name='72/726441/Rnascene/1'>on the RNAs</scene> reveals secondary structure and extensive base pairing between the U4 and U6 snRNAs.

The spliceosome is assembled from the U4/U6.U5 tri-snRNP, the U1 snRNP, and the U2 snRNP. The U2 snRNP interacts with the region highlighted in blue <scene name='72/726441/Dockscene/1'>in this view</scene>. The U1 snRNP interacts with the U2 snRNP. The initial assembly is inactive; extensive conformational changes (including unwinding of the U4/U6 base pairing) are required for activation of the spliceosome.

For the source article see Nguyen et al, 2016<ref>DOI 10.1038/nature16940</ref>.

</StructureSection>
== References ==
<references/>

User:John S. de Banzie/Sandbox 4

2016-03-18T16:21:26Z

John S. de Banzie:

User:John S. de Banzie/Sandbox 4

2016-03-18T15:29:18Z

John S. de Banzie:

==Yeast U4/U6.U5 tri-snRNP==
<StructureSection load='5gan' size='640' side='right' caption='U4/U6.U5 snRNP' [[5gan]]' scene='72/726441/Firstscene/2'>
The <scene name='72/726441/Firstscene/2'>initial view</scene> shows proteins in white and the three snRNAs in colour (U4: orange, U5: red, and U6: purple).

Focusing <scene name='72/726441/Rnascene/1'>on the RNAs</scene> reveals secondary structure and extensive base pairing between the U4 and U6 snRNAs.

The U2 snRNP <scene name='72/726441/Dockscene/1'>binds to the region</scene> highlighted in blue in this view. The U1 snRNP binds to the U2 snRNP. Both interactions lead to extensive conformational change and activation of the spliceosome.

For the source article see Nguyen et al, 2016<ref>DOI 10.1038/nature16940</ref>.

</StructureSection>
== References ==
<references/>

User:John S. de Banzie/Sandbox 4

2016-03-18T15:26:11Z

John S. de Banzie:

==Yeast U4/U6.U5 tri-snRNP==
<StructureSection load='5gan' size='640' side='right' caption='U4/U6.U5 snRNP' [[5gan]]' scene='72/726441/Firstscene/2'>
The <scene name='72/726441/Firstscene/2'>initial view</scene> shows proteins in white and the three snRNAs in colour (U4, U5, and U6).

Focusing <scene name='72/726441/Rnascene/1'>on the RNAs</scene> reveals secondary structure and extensive base pairing between the U4 and U6 snRNAs.

The U2 snRNP <scene name='72/726441/Dockscene/1'>binds to the region</scene> highlighted in blue in this view. The U1 snRNP binds to the U2 snRNP. Both interactions lead to extensive conformational change and activation of the spliceosome.

For the source article see Nguyen et al, 2016<ref>DOI 10.1038/nature16940</ref>.

</StructureSection>
== References ==
<references/>

User:John S. de Banzie/Sandbox 4

2016-03-18T15:23:03Z

John S. de Banzie:

==Yeast U4/U6.U5 tri-snRNP==
<StructureSection load='5gan' size='640' side='right' caption='U4/U6.U5 snRNP' [[5gan]]' scene='72/726441/Firstscene/2'>
The <scene name='72/726441/Firstscene/2'>initial view</scene> shows proteins in white and the three snRNAs in colour (U4, U5, and U6).

Focusing <scene name='72/726441/Rnascene/1'>on the RNAs</scene> reveals extensive base pairing between the U4 and U6 snRNAs.

The U2 snRNP <scene name='72/726441/Dockscene/1'>binds to the region </scene>highlighted in blue in this view. The U1 snRNP binds to the U2snRNP. Both interactions lead to extensive conformational change and activation of the spliceosome.

For the source article see Nguyen et al, 2016<ref>DOI 10.1038/nature16940</ref>.

This is a sample scene created with SAT to <scene name="/12/3456/Sample/1">color</scene> by Group, and another to make <scene name="/12/3456/Sample/2">a transparent representation</scene> of the protein. You can make your own scenes on SAT starting from scratch or loading and editing one of these sample scenes.

</StructureSection>
== References ==
<references/>

User:John S. de Banzie/Sandbox 4

2016-03-18T15:03:02Z

John S. de Banzie:

==Yeast U4/U6.U5 tri-snRNP==
<StructureSection load='5gan' size='640' side='right' caption='U4/U6.U5 snRNP' [[5gan]]' scene='72/726441/Firstscene/2'>
The <scene='72/726441/Firstscene/2'>initial view</scene> shows proteins in white and the three snRNAs in colour (U4, U5, and U6).

<scene='72/726441/Rnascene/1'>Focusing on the RNAs</scene> reveals extensive base pairing between the U4 and U6 snRNAs.

The U2 snRNP binds to the region highlighted in blue in this view. The U1 snRNP binds to the U2snRNP. Both interactions lead to extensive conformational change and activation of the spliceosome.

For the source article see Nguyen et al, 2016<ref>DOI 10.1038/nature16940</ref>.

This is a sample scene created with SAT to <scene name="/12/3456/Sample/1">color</scene> by Group, and another to make <scene name="/12/3456/Sample/2">a transparent representation</scene> of the protein. You can make your own scenes on SAT starting from scratch or loading and editing one of these sample scenes.

</StructureSection>
== References ==
<references/>

User:John S. de Banzie/Sandbox 4

2016-03-18T15:02:13Z

John S. de Banzie:

==Yeast U4/U6.U5 tri-snRNP==
<StructureSection load='5gan' size='640' side='right' caption='U4/U6.U5 snRNP' [[5gan]]' scene='72/726441/Firstscene/2'>
The <scene='72/726441/Firstscene/2'>initial view<scene> shows proteins in white and the three snRNAs in colour (U4, U5, and U6).

<scene='72/726441/Rnascene/1'>Focusing on the RNAs</scene> reveals extensive base pairing between the U4 and U6 snRNAs.

The U2 snRNP binds to the region highlighted in blue in this view. The U1 snRNP binds to the U2snRNP. Both interactions lead to extensive conformational change and activation of the spliceosome.

For the source article see Nguyen et al, 2016<ref>DOI 10.1038/nature16940</ref>.

This is a sample scene created with SAT to <scene name="/12/3456/Sample/1">color</scene> by Group, and another to make <scene name="/12/3456/Sample/2">a transparent representation</scene> of the protein. You can make your own scenes on SAT starting from scratch or loading and editing one of these sample scenes.

</StructureSection>
== References ==
<references/>

User:John S. de Banzie/Sandbox 4

2016-03-18T15:00:22Z

John S. de Banzie:

==Yeast U4/U6.U5 tri-snRNP==
<StructureSection load='5gan' size='640' side='right' caption='U4/U6.U5 snRNP' [[5gan]]' scene='72/726441/Firstscene/2'>
The <scene name='72/726441/Firstscene/2'>initial view<scene> shows proteins in white and the three snRNAs in colour (U4, U5, and U6).

<scene name='72/726441/Rnascene/1'>Focusing on the RNAs</scene> reveals extensive base pairing between the U4 and U6 snRNAs.

The U2 snRNP binds to the region highlighted in blue in this view. The U1 snRNP binds to the U2snRNP. Both interactions lead to extensive conformational change and activation of the spliceosome.

For the source article see Nguyen et al, 2016<ref>DOI 10.1038/nature16940</ref>.

This is a sample scene created with SAT to <scene name="/12/3456/Sample/1">color</scene> by Group, and another to make <scene name="/12/3456/Sample/2">a transparent representation</scene> of the protein. You can make your own scenes on SAT starting from scratch or loading and editing one of these sample scenes.

</StructureSection>
== References ==
<references/>

User:John S. de Banzie/Sandbox 4

2016-03-01T21:44:40Z

John S. de Banzie:

==Yeast U4/U6.U5 tri-snRNP==
<StructureSection load='5gan' size='640' side='right' caption='U4/U6.U5 snRNP' [[5gan]]' scene='72/726441/Firstscene/1'>
Proteins are shown in white, RNAs in red.

For the source article see Nguyen et al, 2016<ref>DOI 10.1038/nature16940</ref>.

This is a sample scene created with SAT to <scene name="/12/3456/Sample/1">color</scene> by Group, and another to make <scene name="/12/3456/Sample/2">a transparent representation</scene> of the protein. You can make your own scenes on SAT starting from scratch or loading and editing one of these sample scenes.

</StructureSection>
== References ==
<references/>

User:John S. de Banzie/Sandbox 4

2016-03-01T21:39:46Z

John S. de Banzie:

==Yeast U4/U6.U5 tri-snRNP==
<StructureSection load='5gan' size='640' side='right' caption='U4/U6.U5 snRNP'> [[5gan]]' scene='72/726441/Firstscene/1'>
Proteins are shown in white, RNAs in red.

For the source article see Nguyen et al, 2016<ref>DOI 10.1038/nature16940</ref>.

This is a sample scene created with SAT to <scene name="/12/3456/Sample/1">color</scene> by Group, and another to make <scene name="/12/3456/Sample/2">a transparent representation</scene> of the protein. You can make your own scenes on SAT starting from scratch or loading and editing one of these sample scenes.

</StructureSection>
== References ==
<references/>

User:John S. de Banzie/Sandbox 4

2016-03-01T21:33:35Z

John S. de Banzie:

==Yeast U4/U6.U5 tri-snRNP==
<StructureSection load='5gan' size='640' side='right' caption='U4/U6.U5 snRNP'>

<scene name="72/726441/Firstscene/1">Holder</scene>

Proteins are shown in white, RNAs in red.

For the source article see Nguyen et al, 2016<ref>DOI 10.1038/nature16940</ref>.

This is a sample scene created with SAT to <scene name="/12/3456/Sample/1">color</scene> by Group, and another to make <scene name="/12/3456/Sample/2">a transparent representation</scene> of the protein. You can make your own scenes on SAT starting from scratch or loading and editing one of these sample scenes.

</StructureSection>
== References ==
<references/>

User:John S. de Banzie/Sandbox 4

2016-03-01T21:30:50Z

John S. de Banzie:

==Yeast U4/U6.U5 tri-snRNP==
<StructureSection load='5gan' size='640' side='right' caption='U4/U6.U5 snRNP' <scene name="72/726441/Firstscene/1">Holder</scene>
Protein is shown in white, RNA in red.

For the source article see Nguyen et al, 2016<ref>DOI 10.1038/nature16940</ref>.

This is a sample scene created with SAT to <scene name="/12/3456/Sample/1">color</scene> by Group, and another to make <scene name="/12/3456/Sample/2">a transparent representation</scene> of the protein. You can make your own scenes on SAT starting from scratch or loading and editing one of these sample scenes.

</StructureSection>
== References ==
<references/>

User:John S. de Banzie/Sandbox 4

2016-03-01T21:29:53Z

John S. de Banzie:

==Yeast U4/U6.U5 tri-snRNP==
<StructureSection load='5gan' size='640' side='right' caption='U4/U6.U5 snRNP' scene=<scene name="72/726441/Firstscene/1"></scene>
Protein is shown in white, RNA in red.

For the source article see Nguyen et al, 2016<ref>DOI 10.1038/nature16940</ref>.

This is a sample scene created with SAT to <scene name="/12/3456/Sample/1">color</scene> by Group, and another to make <scene name="/12/3456/Sample/2">a transparent representation</scene> of the protein. You can make your own scenes on SAT starting from scratch or loading and editing one of these sample scenes.

</StructureSection>
== References ==
<references/>

User:John S. de Banzie/Sandbox 4

2016-03-01T21:28:41Z

John S. de Banzie:

==Yeast U4/U6.U5 tri-snRNP==
<StructureSection load='5gan' size='640' side='right' caption='U4/U6.U5 snRNP' scene=<scene name='72/726441/Firstscene/1'></scene>>
Protein is shown in white, RNA in red.

For the source article see Nguyen et al, 2016<ref>DOI 10.1038/nature16940</ref>.

This is a sample scene created with SAT to <scene name="/12/3456/Sample/1">color</scene> by Group, and another to make <scene name="/12/3456/Sample/2">a transparent representation</scene> of the protein. You can make your own scenes on SAT starting from scratch or loading and editing one of these sample scenes.

</StructureSection>
== References ==
<references/>

User:John S. de Banzie/Sandbox 4

2016-03-01T21:27:20Z

John S. de Banzie:

==Yeast U4/U6.U5 tri-snRNP==
<StructureSection load='5gan' size='640' side='right' caption='U4/U6.U5 snRNP' scene='<scene name='72/726441/Firstscene/1'>TextToBeDisplayed</scene>'>
Protein is shown in white, RNA in red.

For the source article see Nguyen et al, 2016<ref>DOI 10.1038/nature16940</ref>.

This is a sample scene created with SAT to <scene name="/12/3456/Sample/1">color</scene> by Group, and another to make <scene name="/12/3456/Sample/2">a transparent representation</scene> of the protein. You can make your own scenes on SAT starting from scratch or loading and editing one of these sample scenes.

</StructureSection>
== References ==
<references/>

User:John S. de Banzie/Sandbox 4

2016-03-01T21:17:52Z

John S. de Banzie:

==Yeast U4/U6.U5 tri-snRNP==
<StructureSection load='5gan' size='640' side='right' caption='U4/U6.U5 snRNP' scene=''>
Protein is shown in white, RNA in red.

For the source article see Nguyen et al, 2016<ref>DOI 10.1038/nature16940</ref>.

This is a sample scene created with SAT to <scene name="/12/3456/Sample/1">color</scene> by Group, and another to make <scene name="/12/3456/Sample/2">a transparent representation</scene> of the protein. You can make your own scenes on SAT starting from scratch or loading and editing one of these sample scenes.

</StructureSection>
== References ==
<references/>

User:John S. de Banzie/Sandbox 4

2016-03-01T21:14:15Z

John S. de Banzie:

==Yeast U4/U6.U5 tri-snRNP==
<StructureSection load='5gan' size='640' side='right' caption='U4/U6.U5 snRNP' scene=''>
This is a default text for your page '''John S. de Banzie/Sandbox 4'''. Click above on '''edit this page''' to modify. Be careful with the < and > signs.
<ref>DOI 10.1038/nature16940</ref>

This is a sample scene created with SAT to <scene name="/12/3456/Sample/1">color</scene> by Group, and another to make <scene name="/12/3456/Sample/2">a transparent representation</scene> of the protein. You can make your own scenes on SAT starting from scratch or loading and editing one of these sample scenes.

</StructureSection>
== References ==
<references/>

User:John S. de Banzie/Sandbox 4

2016-03-01T21:07:50Z

John S. de Banzie: New page: ==Your Heading Here (maybe something like 'Structure')== <StructureSection load='5gan' size='640' side='right' caption='Caption for this structure' scene=''> This is a default text for you...

==Your Heading Here (maybe something like 'Structure')==
<StructureSection load='5gan' size='640' side='right' caption='Caption for this structure' scene=''>
This is a default text for your page '''John S. de Banzie/Sandbox 4'''. Click above on '''edit this page''' to modify. Be careful with the < and > signs.
You may include any references to papers as in: the use of JSmol in Proteopedia <ref>DOI 10.1002/ijch.201300024</ref> or to the article describing Jmol <ref>PMID:21638687</ref> to the rescue.

== Function ==

== Disease ==

== Relevance ==

== Structural highlights ==

This is a sample scene created with SAT to <scene name="/12/3456/Sample/1">color</scene> by Group, and another to make <scene name="/12/3456/Sample/2">a transparent representation</scene> of the protein. You can make your own scenes on SAT starting from scratch or loading and editing one of these sample scenes.

</StructureSection>
== References ==
<references/>

User:John S. de Banzie

2016-03-01T21:07:07Z

John S. de Banzie:

* Full Real Name:John S. de Banzie

* Position:Professor

* Institution (NO ABBREVIATIONS):Northeastern State University

* City, State/Province, Country:Tahlequah, OK, United States

* Field of Expertise or Study:Molecular Biology (B.Sc., Ph.D.)
*[[User:John S. de Banzie/Sandbox 4]]

User:John S. de Banzie/PGenetic05

2015-01-24T22:24:27Z

John S. de Banzie: New page: B-DNA Structure for Use with Genetics Exercise 05 <StructureSection load='3bse' size='600' side='right' caption='B-DNA: 16 nucleotide pairs' scene='69/692253/Initial/3'> Examine the stru...

B-DNA Structure for Use with Genetics Exercise 05

<StructureSection load='3bse' size='600' side='right' caption='B-DNA: 16 nucleotide pairs' scene='69/692253/Initial/3'>

Examine the structure and determine the nucleotide sequence.

Use the sequence to complete the exercise.

</StructureSection>

User:John S. de Banzie/Sandbox 3

2015-01-24T22:17:38Z

John S. de Banzie:

User:John S. de Banzie/Sandbox 3

2015-01-24T22:15:45Z

John S. de Banzie:

B-DNA Structure for Use with Genetics Exercise 05

<StructureSection load='3bse' size='600' side='right' caption='B-DNA: 16 nucleotide pairs' scene name='69/692253/Initial/3'>

Examine the structure and determine the nucleotide sequence.

Use the sequence to complete the exercise.

</StructureSection>

User:John S. de Banzie/Sandbox 3

2015-01-24T22:12:33Z

John S. de Banzie:

B-DNA Structure for Use with Genetics Exercise 05

<StructureSection load='3bse' size='600' side='right' caption='B-DNA: 16 nucleotide pairs' scene name='69/692253/Initial/1'>

Examine the structure and determine the nucleotide sequence.

Use the sequence to complete the exercise.

</StructureSection>

User:John S. de Banzie/Sandbox 3

2015-01-24T22:08:16Z

John S. de Banzie:

B-DNA Structure for Use with Genetics Exercise 05

<StructureSection load='3bse' size='600' side='right' caption='B-DNA: 16 nucleotide pairs' scene name='69/692253/Openingimage/6'>

Examine the structure and determine the nucleotide sequence.

Use the sequence to complete the exercise.

</StructureSection>

User:John S. de Banzie/Sandbox 3

2015-01-24T22:07:34Z

John S. de Banzie:

B-DNA Structure for Use with Genetics Exercise 05

<StructureSection load='3bse' size='600' side='right' caption='B-DNA: 16 nucleotide pairs'<scene name='69/692253/Openingimage/6'>

Examine the structure and determine the nucleotide sequence.

Use the sequence to complete the exercise.

</StructureSection>
== References ==
<references/>

User:John S. de Banzie/Sandbox 3

2015-01-24T22:06:50Z

John S. de Banzie:

B-DNA Structure for Use with Genetics Exercise 05

<StructureSection load='3bse' size='600' side='right' caption='B-DNA: 16 nucleotide pairs'<scene name='69/692253/Openingimage/6'></scene>>

Examine the structure and determine the nucleotide sequence.

Use the sequence to complete the exercise.

</StructureSection>
== References ==
<references/>

User:John S. de Banzie/Sandbox 3

2015-01-24T21:57:11Z

John S. de Banzie:

B-DNA Structure for Use with Genetics Exercise 05

<StructureSection load='3bse' size='600' side='right' caption='B-DNA: 16 nucleotide pairs' scene='69/692253/Openingimage/5'>

Examine the structure and determine the nucleotide sequence.

Use the sequence to complete the exercise.

</StructureSection>
== References ==
<references/>

User:John S. de Banzie/Sandbox 3

2015-01-24T21:48:36Z

John S. de Banzie:

B-DNA Structure for Use with Genetics Exercise 05

<StructureSection load='3bse' size='600' side='right' caption='B-DNA: 16 nucleotide pairs' scene='69/692253/Openingimage/4'>

Examine the structure and determine the nucleotide sequence.

Use the sequence to complete the exercise.

</StructureSection>
== References ==
<references/>

User:John S. de Banzie/Sandbox 3

2015-01-24T21:46:05Z

John S. de Banzie:

B-DNA Structure for Use with Genetics Exercise 05

<StructureSection load='3bse' size='600' side='right' caption='B-DNA: 16 nucleotide pairs' scene='69/692253/Openingimage/2'>

Examine the structure and determine the nucleotide sequence.

Use the sequence to complete the exercise.

</StructureSection>
== References ==
<references/>

User:John S. de Banzie/Sandbox 3

2015-01-24T21:44:39Z

John S. de Banzie:

B-DNA Structure for Use with Genetics Exercise 05

<StructureSection load='3bse' size='600' side='right' caption='B-DNA: 16 nucleotide pairs' scene='69/692253/Openingimage/3'>

Examine the structure and determine the nucleotide sequence.

Use the sequence to complete the exercise.

</StructureSection>
== References ==
<references/>

User:John S. de Banzie/Sandbox 3

2015-01-24T21:44:06Z

John S. de Banzie:

B-DNA Structure for Use with Genetics Exercise 05

<StructureSection load='3bse' size='600' side='right' caption='B-DNA: 16 nucleotide pairs' scene name='69/692253/Openingimage/3'>

Examine the structure and determine the nucleotide sequence.

Use the sequence to complete the exercise.

</StructureSection>
== References ==
<references/>

User:John S. de Banzie/Sandbox 3

2015-01-24T21:37:32Z

John S. de Banzie:

B-DNA Structure for Use with Genetics Exercise 05
<StructureSection load='3bse' size='600' side='right' caption='B-DNA: 16 nucleotide pairs' scene='69/692253/Openingimage/2'>
Examine the structure and determine the nucleotide sequence.

Use the sequence to complete the exercise.

</StructureSection>
== References ==
<references/>

User:John S. de Banzie/Sandbox 3

2015-01-24T21:36:29Z

John S. de Banzie:

B-DNA Structure for Use with Genetics Exercise 05
<StructureSection load='3bse' size='450' side='right' caption='B-DNA: 16 nucleotide pairs' scene='69/692253/Openingimage/2'>
Examine the structure and determine the nucleotide sequence.

</StructureSection>
== References ==
<references/>

User:John S. de Banzie/Sandbox 3

2015-01-24T21:34:23Z

John S. de Banzie:

B-DNA Structure for Use with Genetics Exercise 05
<StructureSection load='3bse' size='340' side='right' caption='B-DNA: 16 nucleotide pairs' scene='69/692253/Openingimage/1'>
Examine the structure and determine the nucleotide sequence.

</StructureSection>
== References ==
<references/>

User:John S. de Banzie/Sandbox 3

2015-01-24T21:32:14Z

John S. de Banzie:

B-DNA Structure for Use with Genetics Exercise 05
<StructureSection load='3bse' size='340' side='right' caption='B-DNA: 16 nucleotide pairs' scene=''>
Examine the structure and determine the nucleotide sequence.

This is a sample scene created with SAT to <scene name='69/692253/Openingimage/1'>TextToBeDisplayed</scene>a transparent representation</scene> of the protein. You can make your own scenes on SAT starting from scratch or loading and editing one of these sample scenes.

</StructureSection>
== References ==
<references/>

User:John S. de Banzie/Sandbox 3

2015-01-24T21:28:03Z

John S. de Banzie: New page: B-DNA Structure for Use with Genetics Exercise 05 <StructureSection load='3bse' size='340' side='right' caption='B-DNA: 16 nucleotide pairs' scene=''> Examine the structure and determine t...

B-DNA Structure for Use with Genetics Exercise 05
<StructureSection load='3bse' size='340' side='right' caption='B-DNA: 16 nucleotide pairs' scene=''>
Examine the structure and determine the nucleotide sequence.

This is a sample scene created with SAT to <scene name="/12/3456/Sample/1">color</scene> by Group, and another to make <scene name="/12/3456/Sample/2">a transparent representation</scene> of the protein. You can make your own scenes on SAT starting from scratch or loading and editing one of these sample scenes.

</StructureSection>
== References ==
<references/>

User:John S. de Banzie

2015-01-24T21:25:28Z

John S. de Banzie:

User:John S. de Banzie

2015-01-24T21:24:06Z

John S. de Banzie:

User:John S. de Banzie/DNA-BindingZincFinger

2014-06-13T19:28:49Z

John S. de Banzie: New page: ==Zinc Finger== <StructureSection load='1mey' size='400' side='right' caption='Leucine Zipper, 1mey' scene='59/590622/1meyspacefill/1'> This zinc finger protein has one subunit. <scene...

==Zinc Finger==
<StructureSection load='1mey' size='400' side='right' caption='Leucine Zipper, [[1mey]]' scene='59/590622/1meyspacefill/1'>
This zinc finger protein has one subunit. <scene name='59/590622/1meyspacefillunits/1'>Three zinc finger motifs</scene> fit into a major groove in the DNA. Each consists of an <scene name='59/590622/1meycartoon/1'>alpha helix, two short segments of beta pleated sheet, and a zinc ion (violet)</scene>.

</StructureSection>
== References ==
<references/>

User:John S. de Banzie/Sandbox 2

2014-06-13T19:27:05Z

John S. de Banzie:

User:John S. de Banzie/DNA-BindingLeucineZipper

2014-06-13T19:10:01Z

John S. de Banzie: New page: ==Leucine Zipper== <StructureSection load='1ysa' size='400' side='right' caption='Leucine Zipper, 1ysa' scene='59/590622/1ysaspacefill/1'> This leucine zipper protein has <scene name='...

==Leucine Zipper==
<StructureSection load='1ysa' size='400' side='right' caption='Leucine Zipper, [[1ysa]]' scene='59/590622/1ysaspacefill/1'>
This leucine zipper protein has <scene name='59/590622/1ysaspacefillsubunits/1'>two subunits</scene>. An <scene name='59/590622/1ysacartoon/1'>alpha helix</scene> in each subunit fits into a major groove in the DNA. Interactions between <scene name='59/590622/1ysaleucines/2'>leucyl R groups</scene> help hold the subunits together.

</StructureSection>
== References ==
<references/>

User:John S. de Banzie/Sandbox 2

2014-06-13T19:05:52Z

John S. de Banzie:

==Leucine Zipper==
<StructureSection load='1ysa' size='400' side='right' caption='Leucine Zipper, [[1ysa]]' scene='59/590622/1ysaspacefill/1'>
This leucine zipper protein has <scene name='59/590622/1ysaspacefillsubunits/1'>two subunits</scene>. An <scene name='59/590622/1ysacartoon/1'>alpha helix</scene> in each subunit fits into a major groove in the DNA. Interactions between <scene name='59/590622/1ysaleucines/1'>leucyl R groups</scene> help hold the subunits together.

</StructureSection>
== References ==
<references/>

User:John S. de Banzie/DNA-BindingHelixTurnHelix

2014-06-13T19:02:35Z

John S. de Banzie: New page: == Helix-Turn-Helix == <StructureSection load='9ant' size='400' side='right' caption='Helix-Turn-Helix, 9ant' scene='59/590622/9antspacefill/3'> This helix-turn-helix protein has one s...

== Helix-Turn-Helix ==
<StructureSection load='9ant' size='400' side='right' caption='Helix-Turn-Helix, [[9ant]]' scene='59/590622/9antspacefill/3'>
This helix-turn-helix protein has one subunit. An <scene name='59/590622/9antcartoon/3'>alpha helix</scene> fits into a major groove in the DNA.

</StructureSection>
== References ==
<references/>

User:John S. de Banzie/Sandbox 2

2014-06-13T19:00:57Z

John S. de Banzie:

User:John S. de Banzie/Sandbox 2

2014-06-13T18:54:18Z

John S. de Banzie:

== Helix-Turn-Helix ==
<StructureSection load='9ant' size='400' side='right' caption='Helix-Turn-Helix, [[9ant]]' scene='59/590622/9antspacefill/2'/>

This helix-turn-helix protein has one subunit. An <scene name='59/590622/9antcartoon/2'>alpha helix</scene> fits into a major groove in the DNA.

</StructureSection>
== References ==
<references/>

User:John S. de Banzie/DNA-BindingHelixLoopHelix

2014-06-13T18:49:50Z

John S. de Banzie:

== Helix-Loop-Helix ==
<StructureSection load='1mdy' size='400' side='right' caption='Helix-Loop-Helix, [[1mdy]]' scene='59/590622/1mdyspacefill/1'>
This helix-loop-helix protein has <scene name='59/590622/1mdyspacefillsubunit/1'>two subunits</scene>. An <scene name='59/590622/1mdycartoon/1'>alpha helix</scene> in each subunit fits into a major groove in the DNA.

</StructureSection>
== References ==
<references/>

User:John S. de Banzie/Sandbox 2

2014-06-13T18:48:10Z

John S. de Banzie:

== Helix-Turn-Helix ==
<StructureSection load='9ant' size='400' side='right' caption='Helix-Turn-Helix, [[9ant]]' scene='59/590622/9antspacefill/1'/>

This helix-turn-helix protein has one subunit. An <scene name='59/590622/9antcartoon/1'>alpha helix</scene> fits into a major groove in the DNA.

</StructureSection>
== References ==
<references/>

User:John S. de Banzie/Sandbox 2

2014-06-13T18:46:48Z

John S. de Banzie:

== Helix-Turn-Helix ==
<StructureSection load='9ant' size='300' side='right' caption='Helix-Turn-Helix, [[9ant]]' scene='59/590622/9antspacefill/1'/>

== Helix-Turn-Helix ==
This helix-loop-helix protein has one subunit. An <scene name='59/590622/9antcartoon/1'>alpha helix</scene> fits into a major groove in the DNA.

</StructureSection>
== References ==
<references/>

User:John S. de Banzie/DNA-BindingHelixLoopHelix

2014-06-13T18:43:50Z

John S. de Banzie: New page: == Helix-Loop-Helix == <StructureSection load='1mdy' size='400' side='right' caption='Helix-Loop-Helix, 1mdy' scene='59/590622/1mdyspacefill/1'> == Helix-Loop-Helix == This helix-loop-...

== Helix-Loop-Helix ==
<StructureSection load='1mdy' size='400' side='right' caption='Helix-Loop-Helix, [[1mdy]]' scene='59/590622/1mdyspacefill/1'>
== Helix-Loop-Helix ==
This helix-loop-helix protein has <scene name='59/590622/1mdyspacefillsubunit/1'>two subunits</scene>. An <scene name='59/590622/1mdycartoon/1'>alpha helix</scene> in each subunit fits into a major groove in the DNA.

</StructureSection>
== References ==
<references/>