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		<id>https://proteopedia.org/index.php?title=Alendronate&amp;diff=2697116</id>
		<title>Alendronate</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Alendronate&amp;diff=2697116"/>
		<updated>2016-12-12T16:27:57Z</updated>

		<summary type="html">&lt;p&gt;Justin Myles Kidd: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;[[Image:220px-Alendronate sf.png|thumb|left|200px|Structure of Alendronate]][[Alendronate]] (&#039;&#039;&#039;Fosamax&#039;&#039;&#039;) is commonly known for its use in treatment and prevention of osteoporosis in postmenopausal women and men, but is also used to treat Paget&#039;s disease (disease that results in deformed and enlarged bones).&amp;lt;ref&amp;gt;http://www.ncbi.nlm.nih.gov/pubmedhealth/PMH0000018/&amp;lt;/ref&amp;gt; Alendronate belongs to the class of nitrogen-containing bisphosphonates, which are inorganic pyrophosphate analogues.&lt;br /&gt;
{{TOC limit|3}}&lt;br /&gt;
== History of Bisphosphonates ==&lt;br /&gt;
&lt;br /&gt;
Bisphosphonates were first synthesized in Germany in 1865, but were not studied biologically until 1968. In the interim time, they were used in the textile and fertilizer industries due to their apparent inhibitory effect on calcium carbonate. However, in 1968, a group in Switzerland found inorganic pyrophosphates in urine and plasma. In vitro testing of these molecules revealed that they inhibited calcium phosphate precipitation and dissolution, but were destroyed in vivo by phosphatases. These results led to the discovery of bisphosphonates, as they reacted in the prescribed manner.&amp;lt;ref&amp;gt;http://www.ncbi.nlm.nih.gov/pmc/articles/PMC138713/?tool=pmcentrez&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Sodium alendronate was first marketed in 1994 as Fosamax® by Merck pharmaceutical. In 2008, Merck lost their U.S. patent on alendronate, allowing Barr Pharmaceuticals and Teva Pharmaceuticals USA to begin marketing generic forms of sodium alendronate. Other brand names for the drug include &#039;&#039;&#039;Fosamax+D®&#039;&#039;&#039;, &#039;&#039;&#039;Adronat&#039;&#039;&#039;, &#039;&#039;&#039;Alendros&#039;&#039;&#039;, &#039;&#039;&#039;Arendal&#039;&#039;&#039;, and &#039;&#039;&#039;Onclast&#039;&#039;&#039;.&amp;lt;ref&amp;gt;http://www.drugbank.ca/drugs/DB00630&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Structure and General Function ==&lt;br /&gt;
[[Image:Alendronate.gif]]&amp;lt;ref&amp;gt;Image from: http://pharmacy-and-drugs.com&amp;lt;/ref&amp;gt; &lt;br /&gt;
&lt;br /&gt;
Alendronate is an aminobisphosphonate with a nonhydrolyzable P-C-P. It is structurally similar to IPP, which is pictured further down the page, and thus can bind to FPPS in place of IPP. Alendronate generally affects the activity of osteoclasts in bone. Osteoclasts are responsible for breaking down bone and also for bone resorption (losing bone substance). &amp;lt;ref&amp;gt;http://www.medterms.com/script/main/art.asp?articlekey=11794&amp;lt;/ref&amp;gt; When alendronate is present, bone resorption is inhibited and bone breakdown is diminished.    &lt;br /&gt;
&lt;br /&gt;
== Side Effects of Drug ==&lt;br /&gt;
&lt;br /&gt;
Possible side effects for Fosamax include nausea,stomach pain, constipation, diarrhea, gas, bloating or fullness in the stomach, change in ability to taste food, headache, dizziness, and swelling of the joints, hands, or legs. More serious side effects (symptoms requiring doctor involvement) include new or worsening heartburn, difficulty swallowing, pain on swallowing, chest pain, bloody vomit or vomit that looks like coffee grounds, black, tarry, or bloody stools, fever, blisters or peeling skin, rash (may be made worse by sunlight), itching, hives, swelling of eyes, face, lips, tongue, or throat, difficulty breathing, hoarseness, painful or swollen gums, loosening of the teeth, numbness or heavy feeling in the jaw, poor healing of the jaw, and eye pain.&amp;lt;ref&amp;gt;http://www.ncbi.nlm.nih.gov/pubmedhealth/PMH0000018/&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Fosamax has also been linked to sudden subtrochanteric and diaphyseal femur fractures, osteonecrosis of the jaw, and esophageal disorders.&amp;lt;ref&amp;gt;http://fosamax.legalview.info/&amp;lt;/ref&amp;gt; &lt;br /&gt;
&lt;br /&gt;
== Target Proteins and Bone ==&lt;br /&gt;
&lt;br /&gt;
Alendronate not only targets several proteins, but also directly binds to a bone mineral (hydroxyapatite), which causes the inhibition of bone resorption. The alendronate is bound to hydroxypatite and taken up into the osteoclsat during bone resorption.&amp;lt;ref&amp;gt;http://www.ncbi.nlm.nih.gov/pubmed/20209564&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;http://www.ncbi.nlm.nih.gov/pubmed/16046206&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
=== Protein-Tyrosine-Phosphatases (PTP) ===&lt;br /&gt;
&lt;br /&gt;
Protein-Tyrosine-Phosphatses (PTPs) are reported to have an effect on osteoclast formation and function. Initial reports indicated that alendronate inhibited several types of PTPs, though specific mechanisms are not known. The data does suggest that alendronate works as an antagonist, which means that, when bound, the alendronate does not elicit a response from the protein but rather disallows the binding of an agonist which would cause a change (likely activating) in the protein.&amp;lt;ref&amp;gt;http://www.drugbank.ca/drugs/DB00630&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;http://www.ncbi.nlm.nih.gov/pubmed/8610169&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;http://www.ncbi.nlm.nih.gov/pubmed/9310349&amp;lt;/ref&amp;gt; A &lt;br /&gt;
&amp;lt;scene name=&#039;Sandbox_59/Ptpre/1&#039;&amp;gt;PTP example&amp;lt;/scene&amp;gt; is given, so the binding site can be seen.  &lt;br /&gt;
&lt;br /&gt;
&amp;lt;Structure load=&#039;2f92&#039; size=&#039;450&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;Shown: The asymmetric subunit of FPPS, not the assumed biological molecule.&#039; scene=&#039;Insert optional scene name here&#039; /&amp;gt;&lt;br /&gt;
=== Farnesyl Pyrophosphate Synthase (FPPS) ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;scene name=&#039;Sandbox_59/Fpps/3&#039;&amp;gt;Farnesyl pyrophosphate synthase (FPPS)&amp;lt;/scene&amp;gt; is considered the main target protein of aminobisphosphonates (including alendronate). FPPS is the prenyl transferase in the HMG-CoA Reductase Pathway, which forms cholesterol (sterols and terpenoids) from acetyl CoA. It reacts with 3-isopentenyl pyrophosphate (IPP) to form geranyl pyrophosphate (GGP). Researchers discovered that alendronate inhibits FPPS because they found a build-up of IPP in the cell, but less GGP.&amp;lt;ref&amp;gt;http://www.ncbi.nlm.nih.gov/pubmed/10620343&amp;lt;/ref&amp;gt;  &lt;br /&gt;
&lt;br /&gt;
The FPPS mechanism can  be seen below:&lt;br /&gt;
[[Image:FPPS Mechanism.gif]]&lt;br /&gt;
&lt;br /&gt;
The identified mechanism of alendronate on FPPS begins with the absorption of the alendronate into the osteoclast via binding to hydroxyapatite. Once in the osteoclast, the &amp;lt;scene name=&#039;Sandbox_59/Active_site_ligand_space_fill/2&#039;&amp;gt;alendronate binds&amp;lt;/scene&amp;gt; to the active site of FPPS.&amp;lt;ref&amp;gt;Fisher et. all. &#039;&#039;Alendronate mechanism of action: geranylgeraniol, an intermediate in the mevalonate pathway, prevents inhibition of osteoclast formation, bone resorption, and kinase activation in vitro&#039;&#039;.Cell Biology, Vol. 96, pp. 133–138, January 1999&amp;lt;/ref&amp;gt; In the active site, it appears that the alendronate interacts directly with &amp;lt;scene name=&#039;Sandbox_59/Active_site_ligand/2&#039;&amp;gt;three Asp residues&amp;lt;/scene&amp;gt;, not allowing the IPP to bind, and effectively daectivating FPPS. &lt;br /&gt;
&lt;br /&gt;
The deactivation of FPPS causes a disruption of prenylation in the cell and thus affects various GTPases. For instance, it will incorrectly activate the GTPases Rho, Rac, and Cdc42.&amp;lt;ref&amp;gt;http://www.ncbi.nlm.nih.gov/pubmed/16734383&amp;lt;/ref&amp;gt; The inhibition of post-translational prenylation of Ras is likely to cause cell apoptosis. &amp;lt;ref&amp;gt;http://www.ncbi.nlm.nih.gov/pubmed/9556058&amp;lt;/ref&amp;gt; &lt;br /&gt;
&lt;br /&gt;
==== FPPS Substrate ====&lt;br /&gt;
&lt;br /&gt;
[[Image:IPP.png]]&amp;lt;ref&amp;gt;Image from: http://reference.findtarget.com&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Isopentenyl pyrophosphate (IPP) actually binds to and stabilizes the alendronate-FPPS complex, rather than competing with the inhibitor.&amp;lt;ref&amp;gt;http://www.rcsb.org/pdb/explore/explore.do?structureId=2F92&amp;lt;/ref&amp;gt; IPP can be seen in complex with FPPS and zoledronate &lt;br /&gt;
&amp;lt;scene name=&#039;Sandbox_59/Ipp_and_zol/2&#039;&amp;gt;here&amp;lt;/scene&amp;gt;. (Zoledronate is also an aminobisphosphonate) &lt;br /&gt;
&lt;br /&gt;
== Additional Resources ==&lt;br /&gt;
For Additional Resources, See [[Pharmaceutical Drugs]]&lt;br /&gt;
&lt;br /&gt;
== References ==&lt;br /&gt;
&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Justin Myles Kidd</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Fosamax_(alendronate_sodium)&amp;diff=2688811</id>
		<title>Fosamax (alendronate sodium)</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Fosamax_(alendronate_sodium)&amp;diff=2688811"/>
		<updated>2016-12-06T18:43:53Z</updated>

		<summary type="html">&lt;p&gt;Justin Myles Kidd: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;scene name=&#039;74/745950/Correct_ligand_binding_site/8&#039;&amp;gt;&amp;lt;/scene&amp;gt;&amp;lt;scene name=&#039;74/745950/Correct_ligand_binding_site/3&#039;&amp;gt;&amp;lt;/scene&amp;gt;&amp;lt;table style=&amp;quot;width:200px; border:1px solid black; float:right; &amp;quot;&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td colspan=&amp;quot;2&amp;quot;&amp;gt;&amp;lt;center&amp;gt; FOSAMAX &amp;lt;/center&amp;gt;&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td colspan=&amp;quot;2&amp;quot;&amp;gt;&amp;lt;center&amp;gt;[[Image:Fosamax.gif|thumb|center|200px|Figure 1. Fosamax prescription drug, tablet form.]]&amp;lt;/center&amp;gt;&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Formula:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;C4H13NO7P2&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Molar Mass:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;249.097 g/mol&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;INN:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Alendronic Acid&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;USAN:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Alendronate sodium&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;IUPAC:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;4-amino-1-hydroxybutylidene) bisphosphonic acid monosodium salt trihydrate&lt;br /&gt;
&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;/table&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Fosamax (Alendronate Sodium or Alendronic Acid) is a pharmaceutical drug administered as an antiresorptive therapy agent for osteodegenerative diseases such as [https://en.wikipedia.org/wiki/Osteoporosis Osteoporosis], [https://en.wikipedia.org/wiki/Paget&#039;s_disease_of_bone Paget&#039;s disease], and [https://en.wikipedia.org/wiki/Osteogenesis_imperfecta osteogenesis imperfecta]&amp;lt;ref&amp;gt;Gong Li, Altman Russ B, Klein Teri E . &amp;quot;Bisphosphonates pathway&amp;quot; Pharmacogenetics and genomics (2011). from https://www.pharmgkb.org/pathway/PA154423660&amp;lt;/ref&amp;gt;.&lt;br /&gt;
Functioning as a nitrogen-containing, second generation [https://en.wikipedia.org/wiki/Bisphosphonate bisphosphonate], Fosamax binds to [https://en.wikipedia.org/wiki/Hydroxylapatite hydroxyapatite] in bone and promotes [https://en.wikipedia.org/wiki/Apoptosis apoptosis] in [https://en.wikipedia.org/wiki/Osteoclast osteoclasts] (cells specialized in skeletal breakdown), thereby delaying the degradation of osseous tissue. While incorporated in the bone matrix, alendronate is not pharmacologically active; therefore, it must be continuously administered to suppress osteoclasts on newly formed resorption surfaces &amp;lt;ref&amp;gt;Fosamax: Uses, Dosage &amp;amp; Side Effects - Drugs.com. (2016, November 3).Fosamax: Uses, Dosage &amp;amp; Side Effects - Drugs.com. Retrieved November 14, 2016, from https://www.drugs.com/fosamax.html&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
== History &amp;lt;ref&amp;gt;Fosamax (alendronate sodium). Fosamax New FDA Drug Approval | CenterWatch. Merck. Retrieved November 15, 2016, from http://www.centerwatch.com/drug-information/fda-approved-drugs/drug/26/fosamax-alendronate-sodium&amp;lt;/ref&amp;gt;==&lt;br /&gt;
Fosamax has been in use since September 29, 1995 after gaining [http://google2.fda.gov/search?q=fosamax&amp;amp;client=FDAgov&amp;amp;site=FDAgov&amp;amp;lr=&amp;amp;proxystylesheet=FDAgov&amp;amp;requiredfields=-archive%3AYes&amp;amp;output=xml_no_dtd&amp;amp;getfields=* Food and Drug Administration] (FDA) approval. The drug obtained FDA clearance based on data from five clinical trials, lasting two years, involving 1,827 postmenopausal women with osteoporosis in 16 different countries. The trials showed a significant increase in bone mineral density at the spine, hip, and other sites. Overall, the drug reduced the number of women with new spinal fractures by 48%, the total number of new spinal fractures by 63%, and reduced overall height loss by 35%. Today, the drug remains in circulation in caplet and liquid forms and attainable at most pharmaceutical distribution centers with an eligible prescription. &lt;br /&gt;
&lt;br /&gt;
== Side Effects &amp;lt;ref&amp;gt;Common Side Effects of Fosamax (Alendronate Sodium) Drug Center - RxList. (2015, August 26). RxList. Retrieved November 14, 2016, from  http://www.rxlist.com/fosamax-side-effects-drug-center.htm&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
Common side effects of Fosamax include gas, constipation, heartburn, diarrhea, bloating, nausea, vomiting, stomach pain, joint pain or swelling, swelling in your hands or feet, dizziness, headache, eye pain, back pain, or weakness.&lt;br /&gt;
Serious [but rare] side effects of Fosamax include severe pain (joints, bone, muscle, jaw, back, or heartburn), difficulty swallowing, bloody stools, eye pain, skin blisters, and swelling of the face, tongue, or throat. &lt;br /&gt;
&lt;br /&gt;
== Structural Highlights &amp;lt;ref&amp;gt;Protein Data Bank in Europe: Bringing Structure to Biology, from http://www.ebi.ac.uk/pdbe/entry/pdb/2F89&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
As a bisphosphonate, Fosamax is a synthetic analog of [https://en.wikipedia.org/wiki/Pyrophosphate pyrophosphate], containing two phosphate groups on the central carbon. In its drug form, Fosamax includes a sodium bounded in place of a carboxyl hydrogen. In solution, oxyanions may form an ionic bond(s) with metal cations, such as magnesium. The central carbon is also attached to a hydroxyl group (-OH) and a three-carbon chain [-(CH2)3] leading to an amino group (-NH2) (Fig. 2).&lt;br /&gt;
&amp;lt;StructureSection load=&#039;2f89&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;Crystal Structure of human FPPS in complex with a bisphosphonate.&#039; scene=&#039;&#039;&amp;gt; [[Image:Screen Shot 2016-12-04 at 3.21.51 PM.png|thumb|left|200px|Figure 2. Chemical structure of Fosamax (alendronate sodium).]] &lt;br /&gt;
[[Image:Screen Shot 2016-12-02 at 3.24.13 PM.png|thumb|left|400px|Figure 3. DMAPP/GPP substrate/product site of SPSS-alendronate complex indicated by yellow eclipse.]]&lt;br /&gt;
[[Image:Screen Shot 2016-12-02 at 3.33.04 PM.png|thumb|left|400px|Figure 4. Aspartate-Magnesium cation-phosphonate chelate within FPPS-alendronate complex. Pink sphere indicates Mg2+ ion; red indicates oxygen atom, yellow indicates phosphorous atom, blue (bond-line) indicates nitrogen, blue (ribbon) indicates alpha helix motif.]] [[Image:Screen Shot 2016-12-04 at 8.42.20 PM.png|thumb|left|500px|Figure 5. Comparison between the structure of the carbocation transition states of DMAPP and GPP to the nitrogen-containing bisphosphonate alendronate. Close similarity suggests that Fosamax acts as carbocation transition state analog of isoprenoid diphosphates &amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;.]]&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Mechanism of Action ==&lt;br /&gt;
Functioning as a nitrogen-containing, second generation bisphosphonate, Fosamax binds to hydroxyapatite in bone and promotes apoptosis in osteoclasts (cells specialized in skeletal breakdown) (Fig. 6), thus slowing the breakdown of osseous tissue&amp;lt;ref&amp;gt;Drake, Matthew T., Bart L. Clarke, and Sundeep Khosla. &amp;quot;Bisphosphonates: Mechanism of Action and Role in Clinical Practice.&amp;quot; Mayo Clinic Proceedings 83, no. 9 (2008): 1032-045. doi:10.4065/83.9.1032.&amp;lt;/ref&amp;gt;. In order to accomplish this, Fosamax inhibits [http://www.uniprot.org/uniprot/P14324 farnesyl pyrophosphate synthase] (FPPS), an enzyme which plays a role within the [https://en.wikipedia.org/wiki/Mevalonate_pathway mevalonic acid pathway], thereby reducing the production rate of isoprenoid compounds that are essential for post-translational modification of small guanosine triphosphate (GTP)-binding proteins (e.g. Rho, Rab and [https://pdb101.rcsb.org/motm/148 Ras])&amp;lt;ref&amp;gt;Luckman SP, Hughes DE, Coxon FP, Russell RGG, Rogers MJ (2005). Nitrogen-Containing Biphosphonates Inhibit the Mevalonate Pathway and Prevent Post-Translational Prenylation of GTP-Binding Proteins, Including Ras. Journal of Bone and Mineral Research. 20, 1265–74&amp;lt;/ref&amp;gt;. By inhibiting FPPS, Fosamax discourages the successive condensation of isopentenyl pyrophosphate with dimethylallyl pyrophosphate to geranyl pyrophosphate, which interferes with osteoclast function and survival &amp;lt;ref&amp;gt;Alendronic acid. (2005, June 13), from http://www.drugbank.ca/drugs/DB00630#bond-15126&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;Fisher, J. E., Rogers, M. J., Halasy, J. M., Luckman, S. P., Hughes, D. E., Masarachia, P. J., … Reszka, A. A. (1999). Alendronate mechanism of action: geranylgeraniol, an intermediate in the mevalonate pathway, prevents inhibition of osteoclast formation, bone resorption, and kinase activation in vitro. Proceedings of the National Academy of Sciences, 96(1), 133–138. doi:10.1073/pnas.96.1.133, from http://www.pnas.org/content/96/1/133.full.pdf&amp;lt;/ref&amp;gt;. [[Image:Screen Shot 2016-12-04 at 8.23.53 PM.png|thumb|right|400px|Figure 6. Relationship between bisphosphonates and osteoclasts at individual stages of cellular life.&amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;]]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Though the exact chemical mechanism by which alendronate inhibits FPPS remains unclear, nitrogen-containing bisphosphates (&amp;lt;scene name=&#039;74/745950/Ligand/4&#039;&amp;gt;N-BP&amp;lt;/scene&amp;gt;s) bind to the dimethylallyl/geranyl pyrophosphate (DMAPP/GPP) ligand pocket (Fig. 3) and alter the secondary structure of the enzyme&amp;lt;ref&amp;gt;Kavanagh KL, Guo K, Dunford JE, Wu X, Knapp S, and Ebetino FH (2006). The molecular mechanism of nitrogen-containing bisphosphonates as antiosteoporosis drugs. Proceedings of the National Academy of Sciences. 103, 7829–34&amp;lt;/ref&amp;gt;. Specifically, alendronate may bind to the FPPS allylic substrate-binding pocket by ligating the Magnesium ion center via phosphonate oxyanion nucleophilic attack&amp;lt;ref&amp;gt;Hosfield DJ, Zhang Y, Dougan DR, Broun A, Tari LW, Swanson RV (2003). Structural Basis for Bisphosphonate-mediated Inhibition of Isoprenoid Biosynthesis. Journal of Biological Chemistry. 2279, 8526–9&amp;lt;/ref&amp;gt;. Phosphonate groups are stabilized by a cluster of three Mg2+ ions via oxyanion-metal cation charge interactions, as well as three FPPS-conserved aspartate residues located within two alpha helical motifs (&amp;lt;scene name=&#039;74/745950/Aspartates/4&#039;&amp;gt;Asp-103, 107, and 243&amp;lt;/scene&amp;gt;) that form a &amp;lt;scene name=&#039;74/745950/Correct_ligand_binding_site/8&#039;&amp;gt;magnesium-bisphosphonate chelate&amp;lt;/scene&amp;gt; (Fig. 4)&amp;lt;ref&amp;gt;Tarshis L. C., Yan M., Poulter C. D., Sacchettini J. C. (1994) Biochemistry. 33, 10871–10877.&amp;lt;/ref&amp;gt;. N-BPs may bind to the GPP substrate-binding site because N-BPs resemble the structure of the enzyme’s natural substrates (GPP and DMAPP) and act as carbocation transition state analogs (Fig. 5). Interactions between N-BP and amino acid residues (&amp;lt;scene name=&#039;74/745950/Lys200_thr201/5&#039;&amp;gt;Lys-200 and Thr-201&amp;lt;/scene&amp;gt;) suggest that these inhibitors &amp;lt;scene name=&#039;74/745950/Ligand_and_yellow/1&#039;&amp;gt;position their nitrogen group&amp;lt;/scene&amp;gt; in the carbocation-binding site, then mimic the carbocation intermediate formed via substrate ionization &amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;. By acting as a transition state analog for isoprenoid biosynthesis, Fosamax effectively increases the activation energy of a regulatory/rate-determining step in the mevalonate pathway, subsequently reducing the concentration of product molecules that aid the continuous biodegradation of skeletal tissue.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== References ==&lt;br /&gt;
&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Contributors and Editors ==&lt;br /&gt;
&lt;br /&gt;
[[User:Alyssa Jewel D. Floro|Floro, Alyssa Jewel D.]] [[User:Justin Myles Kidd|Kidd, Justin M.]] [[User:Osna M. Samady|Samady, Osna M.]]&lt;/div&gt;</summary>
		<author><name>Justin Myles Kidd</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Fosamax_(alendronate_sodium)&amp;diff=2688810</id>
		<title>Fosamax (alendronate sodium)</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Fosamax_(alendronate_sodium)&amp;diff=2688810"/>
		<updated>2016-12-06T18:43:00Z</updated>

		<summary type="html">&lt;p&gt;Justin Myles Kidd: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;scene name=&#039;74/745950/Correct_ligand_binding_site/8&#039;&amp;gt;&amp;lt;/scene&amp;gt;&amp;lt;scene name=&#039;74/745950/Correct_ligand_binding_site/3&#039;&amp;gt;&amp;lt;/scene&amp;gt;&amp;lt;table style=&amp;quot;width:200px; border:1px solid black; float:right; &amp;quot;&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td colspan=&amp;quot;2&amp;quot;&amp;gt;&amp;lt;center&amp;gt; FOSAMAX &amp;lt;/center&amp;gt;&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td colspan=&amp;quot;2&amp;quot;&amp;gt;&amp;lt;center&amp;gt;[[Image:Fosamax.gif|thumb|center|200px|Figure 1. Fosamax prescription drug, tablet form.]]&amp;lt;/center&amp;gt;&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Formula:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;C4H13NO7P2&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Molar Mass:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;249.097 g/mol&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;INN:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Alendronic Acid&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;USAN:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Alendronate sodium&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;IUPAC:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;4-amino-1-hydroxybutylidene) bisphosphonic acid monosodium salt trihydrate&lt;br /&gt;
&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;/table&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Fosamax (Alendronate Sodium or Alendronic Acid) is a pharmaceutical drug administered as an antiresorptive therapy agent for osteodegenerative diseases such as [https://en.wikipedia.org/wiki/Osteoporosis Osteoporosis], [https://en.wikipedia.org/wiki/Paget&#039;s_disease_of_bone Paget&#039;s disease], and [https://en.wikipedia.org/wiki/Osteogenesis_imperfecta osteogenesis imperfecta]&amp;lt;ref&amp;gt;Gong Li, Altman Russ B, Klein Teri E . &amp;quot;Bisphosphonates pathway&amp;quot; Pharmacogenetics and genomics (2011). from https://www.pharmgkb.org/pathway/PA154423660&amp;lt;/ref&amp;gt;.&lt;br /&gt;
Functioning as a nitrogen-containing, second generation [https://en.wikipedia.org/wiki/Bisphosphonate bisphosphonate], Fosamax binds to [https://en.wikipedia.org/wiki/Hydroxylapatite hydroxyapatite] in bone and promotes [https://en.wikipedia.org/wiki/Apoptosis apoptosis] in [https://en.wikipedia.org/wiki/Osteoclast osteoclasts] (cells specialized in skeletal breakdown), thereby delaying the degradation of osseous tissue. While incorporated in the bone matrix, alendronate is not pharmacologically active; therefore, it must be continuously administered to suppress osteoclasts on newly formed resorption surfaces &amp;lt;ref&amp;gt;Fosamax: Uses, Dosage &amp;amp; Side Effects - Drugs.com. (2016, November 3).Fosamax: Uses, Dosage &amp;amp; Side Effects - Drugs.com. Retrieved November 14, 2016, from https://www.drugs.com/fosamax.html&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
== History &amp;lt;ref&amp;gt;Fosamax (alendronate sodium). Fosamax New FDA Drug Approval | CenterWatch. Merck. Retrieved November 15, 2016, from http://www.centerwatch.com/drug-information/fda-approved-drugs/drug/26/fosamax-alendronate-sodium&amp;lt;/ref&amp;gt;==&lt;br /&gt;
Fosamax has been in use since September 29, 1995 after gaining [http://google2.fda.gov/search?q=fosamax&amp;amp;client=FDAgov&amp;amp;site=FDAgov&amp;amp;lr=&amp;amp;proxystylesheet=FDAgov&amp;amp;requiredfields=-archive%3AYes&amp;amp;output=xml_no_dtd&amp;amp;getfields=* Food and Drug Administration] (FDA) approval. The drug obtained FDA clearance based on data from five clinical trials, lasting two years, involving 1,827 postmenopausal women with osteoporosis in 16 different countries. The trials showed a significant increase in bone mineral density at the spine, hip, and other sites. Overall, the drug reduced the number of women with new spinal fractures by 48%, the total number of new spinal fractures by 63%, and reduced overall height loss by 35%. Today, the drug remains in circulation in caplet and liquid forms and attainable at most pharmaceutical distribution centers with an eligible prescription. &lt;br /&gt;
&lt;br /&gt;
== Side Effects &amp;lt;ref&amp;gt;Common Side Effects of Fosamax (Alendronate Sodium) Drug Center - RxList. (2015, August 26). RxList. Retrieved November 14, 2016, from  http://www.rxlist.com/fosamax-side-effects-drug-center.htm&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
Common side effects of Fosamax include gas, constipation, heartburn, diarrhea, bloating, nausea, vomiting, stomach pain, joint pain or swelling, swelling in your hands or feet, dizziness, headache, eye pain, back pain, or weakness.&lt;br /&gt;
Serious [but extremely rare] side effects of Fosamax include severe pain (joints, bone, muscle, jaw, back, or heartburn), difficulty swallowing, bloody stools, eye pain, skin blisters, and swelling of the face, tongue, or throat. &lt;br /&gt;
&lt;br /&gt;
== Structural Highlights &amp;lt;ref&amp;gt;Protein Data Bank in Europe: Bringing Structure to Biology, from http://www.ebi.ac.uk/pdbe/entry/pdb/2F89&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
As a bisphosphonate, Fosamax is a synthetic analog of [https://en.wikipedia.org/wiki/Pyrophosphate pyrophosphate], containing two phosphate groups on the central carbon. In its drug form, Fosamax includes a sodium bounded in place of a carboxyl hydrogen. In solution, oxyanions may form an ionic bond(s) with metal cations, such as magnesium. The central carbon is also attached to a hydroxyl group (-OH) and a three-carbon chain [-(CH2)3] leading to an amino group (-NH2) (Fig. 2).&lt;br /&gt;
&amp;lt;StructureSection load=&#039;2f89&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;Crystal Structure of human FPPS in complex with a bisphosphonate.&#039; scene=&#039;&#039;&amp;gt; [[Image:Screen Shot 2016-12-04 at 3.21.51 PM.png|thumb|left|200px|Figure 2. Chemical structure of Fosamax (alendronate sodium).]] &lt;br /&gt;
[[Image:Screen Shot 2016-12-02 at 3.24.13 PM.png|thumb|left|400px|Figure 3. DMAPP/GPP substrate/product site of SPSS-alendronate complex indicated by yellow eclipse.]]&lt;br /&gt;
[[Image:Screen Shot 2016-12-02 at 3.33.04 PM.png|thumb|left|400px|Figure 4. Aspartate-Magnesium cation-phosphonate chelate within FPPS-alendronate complex. Pink sphere indicates Mg2+ ion; red indicates oxygen atom, yellow indicates phosphorous atom, blue (bond-line) indicates nitrogen, blue (ribbon) indicates alpha helix motif.]] [[Image:Screen Shot 2016-12-04 at 8.42.20 PM.png|thumb|left|500px|Figure 5. Comparison between the structure of the carbocation transition states of DMAPP and GPP to the nitrogen-containing bisphosphonate alendronate. Close similarity suggests that Fosamax acts as carbocation transition state analog of isoprenoid diphosphates &amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;.]]&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Mechanism of Action ==&lt;br /&gt;
Functioning as a nitrogen-containing, second generation bisphosphonate, Fosamax binds to hydroxyapatite in bone and promotes apoptosis in osteoclasts (cells specialized in skeletal breakdown) (Fig. 6), thus slowing the breakdown of osseous tissue&amp;lt;ref&amp;gt;Drake, Matthew T., Bart L. Clarke, and Sundeep Khosla. &amp;quot;Bisphosphonates: Mechanism of Action and Role in Clinical Practice.&amp;quot; Mayo Clinic Proceedings 83, no. 9 (2008): 1032-045. doi:10.4065/83.9.1032.&amp;lt;/ref&amp;gt;. In order to accomplish this, Fosamax inhibits [http://www.uniprot.org/uniprot/P14324 farnesyl pyrophosphate synthase] (FPPS), an enzyme which plays a role within the [https://en.wikipedia.org/wiki/Mevalonate_pathway mevalonic acid pathway], thereby reducing the production rate of isoprenoid compounds that are essential for post-translational modification of small guanosine triphosphate (GTP)-binding proteins (e.g. Rho, Rab and [https://pdb101.rcsb.org/motm/148 Ras])&amp;lt;ref&amp;gt;Luckman SP, Hughes DE, Coxon FP, Russell RGG, Rogers MJ (2005). Nitrogen-Containing Biphosphonates Inhibit the Mevalonate Pathway and Prevent Post-Translational Prenylation of GTP-Binding Proteins, Including Ras. Journal of Bone and Mineral Research. 20, 1265–74&amp;lt;/ref&amp;gt;. By inhibiting FPPS, Fosamax discourages the successive condensation of isopentenyl pyrophosphate with dimethylallyl pyrophosphate to geranyl pyrophosphate, which interferes with osteoclast function and survival &amp;lt;ref&amp;gt;Alendronic acid. (2005, June 13), from http://www.drugbank.ca/drugs/DB00630#bond-15126&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;Fisher, J. E., Rogers, M. J., Halasy, J. M., Luckman, S. P., Hughes, D. E., Masarachia, P. J., … Reszka, A. A. (1999). Alendronate mechanism of action: geranylgeraniol, an intermediate in the mevalonate pathway, prevents inhibition of osteoclast formation, bone resorption, and kinase activation in vitro. Proceedings of the National Academy of Sciences, 96(1), 133–138. doi:10.1073/pnas.96.1.133, from http://www.pnas.org/content/96/1/133.full.pdf&amp;lt;/ref&amp;gt;. [[Image:Screen Shot 2016-12-04 at 8.23.53 PM.png|thumb|right|400px|Figure 6. Relationship between bisphosphonates and osteoclasts at individual stages of cellular life.&amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;]]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Though the exact chemical mechanism by which alendronate inhibits FPPS remains unclear, nitrogen-containing bisphosphates (&amp;lt;scene name=&#039;74/745950/Ligand/4&#039;&amp;gt;N-BP&amp;lt;/scene&amp;gt;s) bind to the dimethylallyl/geranyl pyrophosphate (DMAPP/GPP) ligand pocket (Fig. 3) and alter the secondary structure of the enzyme&amp;lt;ref&amp;gt;Kavanagh KL, Guo K, Dunford JE, Wu X, Knapp S, and Ebetino FH (2006). The molecular mechanism of nitrogen-containing bisphosphonates as antiosteoporosis drugs. Proceedings of the National Academy of Sciences. 103, 7829–34&amp;lt;/ref&amp;gt;. Specifically, alendronate may bind to the FPPS allylic substrate-binding pocket by ligating the Magnesium ion center via phosphonate oxyanion nucleophilic attack&amp;lt;ref&amp;gt;Hosfield DJ, Zhang Y, Dougan DR, Broun A, Tari LW, Swanson RV (2003). Structural Basis for Bisphosphonate-mediated Inhibition of Isoprenoid Biosynthesis. Journal of Biological Chemistry. 2279, 8526–9&amp;lt;/ref&amp;gt;. Phosphonate groups are stabilized by a cluster of three Mg2+ ions via oxyanion-metal cation charge interactions, as well as three FPPS-conserved aspartate residues located within two alpha helical motifs (&amp;lt;scene name=&#039;74/745950/Aspartates/4&#039;&amp;gt;Asp-103, 107, and 243&amp;lt;/scene&amp;gt;) that form a &amp;lt;scene name=&#039;74/745950/Correct_ligand_binding_site/8&#039;&amp;gt;magnesium-bisphosphonate chelate&amp;lt;/scene&amp;gt; (Fig. 4)&amp;lt;ref&amp;gt;Tarshis L. C., Yan M., Poulter C. D., Sacchettini J. C. (1994) Biochemistry. 33, 10871–10877.&amp;lt;/ref&amp;gt;. N-BPs may bind to the GPP substrate-binding site because N-BPs resemble the structure of the enzyme’s natural substrates (GPP and DMAPP) and act as carbocation transition state analogs (Fig. 5). Interactions between N-BP and amino acid residues (&amp;lt;scene name=&#039;74/745950/Lys200_thr201/5&#039;&amp;gt;Lys-200 and Thr-201&amp;lt;/scene&amp;gt;) suggest that these inhibitors &amp;lt;scene name=&#039;74/745950/Ligand_and_yellow/1&#039;&amp;gt;position their nitrogen group&amp;lt;/scene&amp;gt; in the carbocation-binding site, then mimic the carbocation intermediate formed via substrate ionization &amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;. By acting as a transition state analog for isoprenoid biosynthesis, Fosamax effectively increases the activation energy of a regulatory/rate-determining step in the mevalonate pathway, subsequently reducing the concentration of product molecules that aid the continuous biodegradation of skeletal tissue.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== References ==&lt;br /&gt;
&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Contributors and Editors ==&lt;br /&gt;
&lt;br /&gt;
[[User:Alyssa Jewel D. Floro|Floro, Alyssa Jewel D.]] [[User:Justin Myles Kidd|Kidd, Justin M.]] [[User:Osna M. Samady|Samady, Osna M.]]&lt;/div&gt;</summary>
		<author><name>Justin Myles Kidd</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Fosamax_(alendronate_sodium)&amp;diff=2688806</id>
		<title>Fosamax (alendronate sodium)</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Fosamax_(alendronate_sodium)&amp;diff=2688806"/>
		<updated>2016-12-06T18:37:23Z</updated>

		<summary type="html">&lt;p&gt;Justin Myles Kidd: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;scene name=&#039;74/745950/Correct_ligand_binding_site/8&#039;&amp;gt;&amp;lt;/scene&amp;gt;&amp;lt;scene name=&#039;74/745950/Correct_ligand_binding_site/3&#039;&amp;gt;&amp;lt;/scene&amp;gt;&amp;lt;table style=&amp;quot;width:200px; border:1px solid black; float:right; &amp;quot;&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td colspan=&amp;quot;2&amp;quot;&amp;gt;&amp;lt;center&amp;gt; FOSAMAX &amp;lt;/center&amp;gt;&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td colspan=&amp;quot;2&amp;quot;&amp;gt;&amp;lt;center&amp;gt;[[Image:Fosamax.gif|thumb|center|200px|Figure 1. Fosamax prescription drug, tablet form.]]&amp;lt;/center&amp;gt;&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Formula:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;C4H13NO7P2&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Molar Mass:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;249.097 g/mol&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;INN:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Alendronic Acid&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;USAN:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Alendronate sodium&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;IUPAC:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;4-amino-1-hydroxybutylidene) bisphosphonic acid monosodium salt trihydrate&lt;br /&gt;
&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;/table&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Fosamax (Alendronate Sodium or Alendronic Acid) is a pharmaceutical drug administered as an antiresorptive therapy agent for osteodegenerative diseases such as [https://en.wikipedia.org/wiki/Osteoporosis Osteoporosis], [https://en.wikipedia.org/wiki/Paget&#039;s_disease_of_bone Paget&#039;s disease], and [https://en.wikipedia.org/wiki/Osteogenesis_imperfecta osteogenesis imperfecta]&amp;lt;ref&amp;gt;Gong Li, Altman Russ B, Klein Teri E . &amp;quot;Bisphosphonates pathway&amp;quot; Pharmacogenetics and genomics (2011). from https://www.pharmgkb.org/pathway/PA154423660&amp;lt;/ref&amp;gt;.&lt;br /&gt;
Functioning as a nitrogen-containing, second generation [https://en.wikipedia.org/wiki/Bisphosphonate bisphosphonate], Fosamax binds to [https://en.wikipedia.org/wiki/Hydroxylapatite hydroxyapatite] in bone and promotes [https://en.wikipedia.org/wiki/Apoptosis apoptosis] in [https://en.wikipedia.org/wiki/Osteoclast osteoclasts] (cells specialized in skeletal breakdown), thereby delaying the degradation of osseous tissue. While incorporated in the bone matrix, alendronate is not pharmacologically active; therefore, it must be continuously administered to suppress osteoclasts on newly formed resorption surfaces &amp;lt;ref&amp;gt;Fosamax: Uses, Dosage &amp;amp; Side Effects - Drugs.com. (2016, November 3).Fosamax: Uses, Dosage &amp;amp; Side Effects - Drugs.com. Retrieved November 14, 2016, from https://www.drugs.com/fosamax.html&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
== History &amp;lt;ref&amp;gt;Fosamax (alendronate sodium). Fosamax New FDA Drug Approval | CenterWatch. Merck. Retrieved November 15, 2016, from http://www.centerwatch.com/drug-information/fda-approved-drugs/drug/26/fosamax-alendronate-sodium&amp;lt;/ref&amp;gt;==&lt;br /&gt;
Fosamax has been in use since September 29, 1995 after gaining [http://google2.fda.gov/search?q=fosamax&amp;amp;client=FDAgov&amp;amp;site=FDAgov&amp;amp;lr=&amp;amp;proxystylesheet=FDAgov&amp;amp;requiredfields=-archive%3AYes&amp;amp;output=xml_no_dtd&amp;amp;getfields=* Food and Drug Administration] (FDA) approval. The drug obtained FDA clearance based on data from five clinical trials, lasting two years, involving 1,827 postmenopausal women with osteoporosis in 16 different countries. The trials showed a significant increase in bone mineral density at the spine, hip, and other sites. Overall, the drug reduced the number of women with new spinal fractures by 48%, the total number of new spinal fractures by 63%, and reduced overall height loss by 35%. Today, the drug remains in circulation in caplet and liquid forms and attainable at most pharmaceutical distribution centers with an eligible prescription. &lt;br /&gt;
&lt;br /&gt;
== Side Effects &amp;lt;ref&amp;gt;Common Side Effects of Fosamax (Alendronate Sodium) Drug Center - RxList. (2015, August 26). RxList. Retrieved November 14, 2016, from  http://www.rxlist.com/fosamax-side-effects-drug-center.htm&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
Common side effects of Fosamax include gas, constipation, heartburn, diarrhea, bloating, nausea, vomiting, stomach pain, joint pain or swelling, swelling in your hands or feet, dizziness, headache, eye pain, back pain, or weakness.&lt;br /&gt;
Serious side effects of Fosamax include severe pain (joints, bone, muscle, jaw, back or heartburn), chest pain, difficulty swallowing, bloody stools, eye pain, skin blisters, and swelling of the face, tongue, or throat. &lt;br /&gt;
&lt;br /&gt;
== Structural Highlights &amp;lt;ref&amp;gt;Protein Data Bank in Europe: Bringing Structure to Biology, from http://www.ebi.ac.uk/pdbe/entry/pdb/2F89&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
As a bisphosphonate, Fosamax is a synthetic analog of [https://en.wikipedia.org/wiki/Pyrophosphate pyrophosphate], containing two phosphate groups on the central carbon. In its drug form, Fosamax includes a sodium bounded in place of a carboxyl hydrogen. In solution, oxyanions may form an ionic bond(s) with metal cations, such as magnesium. The central carbon is also attached to a hydroxyl group (-OH) and a three-carbon chain [-(CH2)3] leading to an amino group (-NH2) (Fig. 2).&lt;br /&gt;
&amp;lt;StructureSection load=&#039;2f89&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;Crystal Structure of human FPPS in complex with a bisphosphonate.&#039; scene=&#039;&#039;&amp;gt; [[Image:Screen Shot 2016-12-04 at 3.21.51 PM.png|thumb|left|200px|Figure 2. Chemical structure of Fosamax (alendronate sodium).]] &lt;br /&gt;
[[Image:Screen Shot 2016-12-02 at 3.24.13 PM.png|thumb|left|400px|Figure 3. DMAPP/GPP substrate/product site of SPSS-alendronate complex indicated by yellow eclipse.]]&lt;br /&gt;
[[Image:Screen Shot 2016-12-02 at 3.33.04 PM.png|thumb|left|400px|Figure 4. Aspartate-Magnesium cation-phosphonate chelate within FPPS-alendronate complex. Pink sphere indicates Mg2+ ion; red indicates oxygen atom, yellow indicates phosphorous atom, blue (bond-line) indicates nitrogen, blue (ribbon) indicates alpha helix motif.]] [[Image:Screen Shot 2016-12-04 at 8.42.20 PM.png|thumb|left|500px|Figure 5. Comparison between the structure of the carbocation transition states of DMAPP and GPP to the nitrogen-containing bisphosphonate alendronate. Close similarity suggests that Fosamax acts as carbocation transition state analog of isoprenoid diphosphates &amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;.]]&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Mechanism of Action ==&lt;br /&gt;
Functioning as a nitrogen-containing, second generation bisphosphonate, Fosamax binds to hydroxyapatite in bone and promotes apoptosis in osteoclasts (cells specialized in skeletal breakdown) (Fig. 6), thus slowing the breakdown of osseous tissue&amp;lt;ref&amp;gt;Drake, Matthew T., Bart L. Clarke, and Sundeep Khosla. &amp;quot;Bisphosphonates: Mechanism of Action and Role in Clinical Practice.&amp;quot; Mayo Clinic Proceedings 83, no. 9 (2008): 1032-045. doi:10.4065/83.9.1032.&amp;lt;/ref&amp;gt;. In order to accomplish this, Fosamax inhibits [http://www.uniprot.org/uniprot/P14324 farnesyl pyrophosphate synthase] (FPPS), an enzyme which plays a role within the [https://en.wikipedia.org/wiki/Mevalonate_pathway mevalonic acid pathway], thereby reducing the production rate of isoprenoid compounds that are essential for post-translational modification of small guanosine triphosphate (GTP)-binding proteins (e.g. Rho, Rab and [https://pdb101.rcsb.org/motm/148 Ras])&amp;lt;ref&amp;gt;Luckman SP, Hughes DE, Coxon FP, Russell RGG, Rogers MJ (2005). Nitrogen-Containing Biphosphonates Inhibit the Mevalonate Pathway and Prevent Post-Translational Prenylation of GTP-Binding Proteins, Including Ras. Journal of Bone and Mineral Research. 20, 1265–74&amp;lt;/ref&amp;gt;. By inhibiting FPPS, Fosamax discourages the successive condensation of isopentenyl pyrophosphate with dimethylallyl pyrophosphate to geranyl pyrophosphate, which interferes with osteoclast function and survival &amp;lt;ref&amp;gt;Alendronic acid. (2005, June 13), from http://www.drugbank.ca/drugs/DB00630#bond-15126&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;Fisher, J. E., Rogers, M. J., Halasy, J. M., Luckman, S. P., Hughes, D. E., Masarachia, P. J., … Reszka, A. A. (1999). Alendronate mechanism of action: geranylgeraniol, an intermediate in the mevalonate pathway, prevents inhibition of osteoclast formation, bone resorption, and kinase activation in vitro. Proceedings of the National Academy of Sciences, 96(1), 133–138. doi:10.1073/pnas.96.1.133, from http://www.pnas.org/content/96/1/133.full.pdf&amp;lt;/ref&amp;gt;. [[Image:Screen Shot 2016-12-04 at 8.23.53 PM.png|thumb|right|400px|Figure 6. Relationship between bisphosphonates and osteoclasts at individual stages of cellular life.&amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;]]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Though the exact chemical mechanism by which alendronate inhibits FPPS remains unclear, nitrogen-containing bisphosphates (&amp;lt;scene name=&#039;74/745950/Ligand/4&#039;&amp;gt;N-BP&amp;lt;/scene&amp;gt;s) bind to the dimethylallyl/geranyl pyrophosphate (DMAPP/GPP) ligand pocket (Fig. 3) and alter the secondary structure of the enzyme&amp;lt;ref&amp;gt;Kavanagh KL, Guo K, Dunford JE, Wu X, Knapp S, and Ebetino FH (2006). The molecular mechanism of nitrogen-containing bisphosphonates as antiosteoporosis drugs. Proceedings of the National Academy of Sciences. 103, 7829–34&amp;lt;/ref&amp;gt;. Specifically, alendronate may bind to the FPPS allylic substrate-binding pocket by ligating the Magnesium ion center via phosphonate oxyanion nucleophilic attack&amp;lt;ref&amp;gt;Hosfield DJ, Zhang Y, Dougan DR, Broun A, Tari LW, Swanson RV (2003). Structural Basis for Bisphosphonate-mediated Inhibition of Isoprenoid Biosynthesis. Journal of Biological Chemistry. 2279, 8526–9&amp;lt;/ref&amp;gt;. Phosphonate groups are stabilized by a cluster of three Mg2+ ions via oxyanion-metal cation charge interactions, as well as three FPPS-conserved aspartate residues located within two alpha helical motifs (&amp;lt;scene name=&#039;74/745950/Aspartates/4&#039;&amp;gt;Asp-103, 107, and 243&amp;lt;/scene&amp;gt;) that form a &amp;lt;scene name=&#039;74/745950/Correct_ligand_binding_site/8&#039;&amp;gt;magnesium-bisphosphonate chelate&amp;lt;/scene&amp;gt; (Fig. 4)&amp;lt;ref&amp;gt;Tarshis L. C., Yan M., Poulter C. D., Sacchettini J. C. (1994) Biochemistry. 33, 10871–10877.&amp;lt;/ref&amp;gt;. N-BPs may bind to the GPP substrate-binding site because N-BPs resemble the structure of the enzyme’s natural substrates (GPP and DMAPP) and act as carbocation transition state analogs (Fig. 5). Interactions between N-BP and amino acid residues (&amp;lt;scene name=&#039;74/745950/Lys200_thr201/5&#039;&amp;gt;Lys-200 and Thr-201&amp;lt;/scene&amp;gt;) suggest that these inhibitors &amp;lt;scene name=&#039;74/745950/Ligand_and_yellow/1&#039;&amp;gt;position their nitrogen group&amp;lt;/scene&amp;gt; in the carbocation-binding site, then mimic the carbocation intermediate formed via substrate ionization &amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;. By acting as a transition state analog for isoprenoid biosynthesis, Fosamax effectively increases the activation energy of a regulatory/rate-determining step in the mevalonate pathway, subsequently reducing the concentration of product molecules that aid the continuous biodegradation of skeletal tissue.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== References ==&lt;br /&gt;
&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Contributors and Editors ==&lt;br /&gt;
&lt;br /&gt;
[[User:Alyssa Jewel D. Floro|Floro, Alyssa Jewel D.]] [[User:Justin Myles Kidd|Kidd, Justin M.]] [[User:Osna M. Samady|Samady, Osna M.]]&lt;/div&gt;</summary>
		<author><name>Justin Myles Kidd</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Fosamax_(alendronate_sodium)&amp;diff=2688804</id>
		<title>Fosamax (alendronate sodium)</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Fosamax_(alendronate_sodium)&amp;diff=2688804"/>
		<updated>2016-12-06T18:34:04Z</updated>

		<summary type="html">&lt;p&gt;Justin Myles Kidd: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;scene name=&#039;74/745950/Correct_ligand_binding_site/8&#039;&amp;gt;&amp;lt;/scene&amp;gt;&amp;lt;scene name=&#039;74/745950/Correct_ligand_binding_site/3&#039;&amp;gt;&amp;lt;/scene&amp;gt;&amp;lt;table style=&amp;quot;width:200px; border:1px solid black; float:right; &amp;quot;&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td colspan=&amp;quot;2&amp;quot;&amp;gt;&amp;lt;center&amp;gt; FOSAMAX &amp;lt;/center&amp;gt;&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td colspan=&amp;quot;2&amp;quot;&amp;gt;&amp;lt;center&amp;gt;[[Image:Fosamax.gif|thumb|center|200px|Figure 1. Fosamax prescription drug, tablet form.]]&amp;lt;/center&amp;gt;&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Formula:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;C4H13NO7P2&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Molar Mass:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;249.097 g/mol&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;INN:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Alendronic Acid&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;USAN:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Alendronate sodium&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;IUPAC:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;4-amino-1-hydroxybutylidene) bisphosphonic acid monosodium salt trihydrate&lt;br /&gt;
&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;/table&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Fosamax (Alendronate Sodium or Alendronic Acid) is a pharmaceutical drug administered as an antiresorptive therapy agent for osteodegenerative diseases such as [https://en.wikipedia.org/wiki/Osteoporosis Osteoporosis], [https://en.wikipedia.org/wiki/Paget&#039;s_disease_of_bone Paget&#039;s disease], and [https://en.wikipedia.org/wiki/Osteogenesis_imperfecta osteogenesis imperfecta]&amp;lt;ref&amp;gt;Gong Li, Altman Russ B, Klein Teri E . &amp;quot;Bisphosphonates pathway&amp;quot; Pharmacogenetics and genomics (2011). from https://www.pharmgkb.org/pathway/PA154423660&amp;lt;/ref&amp;gt;.&lt;br /&gt;
Functioning as a nitrogen-containing, second generation [https://en.wikipedia.org/wiki/Bisphosphonate bisphosphonate], Fosamax binds to [https://en.wikipedia.org/wiki/Hydroxylapatite hydroxyapatite] in bone and promotes [https://en.wikipedia.org/wiki/Apoptosis apoptosis] in [https://en.wikipedia.org/wiki/Osteoclast osteoclasts] (cells specialized in skeletal breakdown), thereby delaying the degradation of osseous tissue. While incorporated in the bone matrix, alendronate is not pharmacologically active; therefore, it must be continuously administered to suppress osteoclasts on newly formed resorption surfaces &amp;lt;ref&amp;gt;Fosamax: Uses, Dosage &amp;amp; Side Effects - Drugs.com. (2016, November 3).Fosamax: Uses, Dosage &amp;amp; Side Effects - Drugs.com. Retrieved November 14, 2016, from https://www.drugs.com/fosamax.html&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
== History &amp;lt;ref&amp;gt;Fosamax (alendronate sodium). Fosamax New FDA Drug Approval | CenterWatch. Merck. Retrieved November 15, 2016, from http://www.centerwatch.com/drug-information/fda-approved-drugs/drug/26/fosamax-alendronate-sodium&amp;lt;/ref&amp;gt;==&lt;br /&gt;
Fosamax has been in use since September 29, 1995 after gaining [http://google2.fda.gov/search?q=fosamax&amp;amp;client=FDAgov&amp;amp;site=FDAgov&amp;amp;lr=&amp;amp;proxystylesheet=FDAgov&amp;amp;requiredfields=-archive%3AYes&amp;amp;output=xml_no_dtd&amp;amp;getfields=* Food and Drug Administration] (FDA) approval. The drug obtained FDA clearance based on data from five clinical trials, lasting two years, involving 1,827 postmenopausal women with osteoporosis in 16 different countries. The trials showed a significant increase in bone mineral density at the spine, hip, and other sites. Overall, the drug reduced the number of women with new spinal fractures by 48%, the total number of new spinal fractures by 63%, and reduced overall height loss by 35%. Today, the drug remains in circulation in caplet and liquid forms and attainable at most pharmaceutical distribution centers with an eligible prescription. &lt;br /&gt;
&lt;br /&gt;
== Side Effects &amp;lt;ref&amp;gt;Common Side Effects of Fosamax (Alendronate Sodium) Drug Center - RxList. (2015, August 26). RxList. Retrieved November 14, 2016, from  http://www.rxlist.com/fosamax-side-effects-drug-center.htm&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
Common side effects of Fosamax include gas, constipation, heartburn, diarrhea, bloating, nausea, vomiting, stomach pain, joint pain or swelling, swelling in your hands or feet, dizziness, headache, eye pain, back pain, or weakness.&lt;br /&gt;
Serious side effects of Fosamax include severe pain (joints, bone, muscle, jaw, back or heartburn), chest pain, difficulty swallowing, bloody stools, eye pain, skin blisters, and swelling of the face, tongue, or throat. &lt;br /&gt;
&lt;br /&gt;
== Structural Highlights &amp;lt;ref&amp;gt;Protein Data Bank in Europe: Bringing Structure to Biology, from http://www.ebi.ac.uk/pdbe/entry/pdb/2F89&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
As a bisphosphonate, Fosamax is a synthetic analog of [https://en.wikipedia.org/wiki/Pyrophosphate pyrophosphate], containing two phosphate groups on the central carbon. In its drug form, Fosamax includes a sodium bounded in place of a carboxyl hydrogen. In solution, oxyanions may form an ionic bond(s) with metal cations, such as magnesium. The central carbon is also attached to a hydroxyl group (-OH) and a three-carbon chain [-(CH2)3] leading to an amino group (-NH2) (Fig. 2).&lt;br /&gt;
&amp;lt;StructureSection load=&#039;2f89&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;Crystal Structure of human FPPS in complex with a bisphosphonate.&#039; scene=&#039;&#039;&amp;gt; [[Image:Screen Shot 2016-12-04 at 3.21.51 PM.png|thumb|left|200px|Figure 2. Chemical structure of Fosamax (alendronate sodium).]] &lt;br /&gt;
[[Image:Screen Shot 2016-12-02 at 3.24.13 PM.png|thumb|left|400px|Figure 3. DMAPP/GPP substrate/product site of SPSS-alendronate complex indicated by yellow eclipse.]]&lt;br /&gt;
[[Image:Screen Shot 2016-12-02 at 3.33.04 PM.png|thumb|left|400px|Figure 4. Aspartate-Magnesium cation-phosphonate chelate within FPPS-alendronate complex. Pink sphere indicates Mg2+ ion; red indicates oxygen atom, yellow indicates phosphorous atom, blue (bond-line) indicates nitrogen, blue (ribbon) indicates alpha helix motif.]] [[Image:Screen Shot 2016-12-04 at 8.42.20 PM.png|thumb|left|500px|Figure 5. Comparison between the structure of the carbocation transition states of DMAPP and GPP to the nitrogen-containing bisphosphonate alendronate. Close similarity suggests that Fosamax acts as carbocation transition state analog of isoprenoid diphosphates &amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;.]]&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Mechanism of Action ==&lt;br /&gt;
Functioning as a nitrogen-containing, second generation bisphosphonate, Fosamax binds to hydroxyapatite in bone and promotes apoptosis in osteoclasts (cells specialized in skeletal breakdown) (Fig. 6), thus slowing the breakdown of osseous tissue&amp;lt;ref&amp;gt;Drake, Matthew T., Bart L. Clarke, and Sundeep Khosla. &amp;quot;Bisphosphonates: Mechanism of Action and Role in Clinical Practice.&amp;quot; Mayo Clinic Proceedings 83, no. 9 (2008): 1032-045. doi:10.4065/83.9.1032.&amp;lt;/ref&amp;gt;. In order to accomplish this, Fosamax inhibits [http://www.uniprot.org/uniprot/P14324 farnesyl pyrophosphate synthase] (FPPS), an enzyme which plays a role within the [https://en.wikipedia.org/wiki/Mevalonate_pathway mevalonic acid pathway], thereby reducing the production rate of isoprenoid compounds that are essential for post-translational modification of small guanosine triphosphate (GTP)-binding proteins (e.g. Rho, Rab and [https://pdb101.rcsb.org/motm/148 Ras])&amp;lt;ref&amp;gt;Luckman SP, Hughes DE, Coxon FP, Russell RGG, Rogers MJ (2005). Nitrogen-Containing Biphosphonates Inhibit the Mevalonate Pathway and Prevent Post-Translational Prenylation of GTP-Binding Proteins, Including Ras. Journal of Bone and Mineral Research. 20, 1265–74&amp;lt;/ref&amp;gt;. By inhibiting FPPS, Fosamax discourages the successive condensation of isopentenyl pyrophosphate with dimethylallyl pyrophosphate to geranyl pyrophosphate, which interferes with osteoclast function and survival &amp;lt;ref&amp;gt;Alendronic acid. (2005, June 13), from http://www.drugbank.ca/drugs/DB00630#bond-15126&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;Fisher, J. E., Rogers, M. J., Halasy, J. M., Luckman, S. P., Hughes, D. E., Masarachia, P. J., … Reszka, A. A. (1999). Alendronate mechanism of action: geranylgeraniol, an intermediate in the mevalonate pathway, prevents inhibition of osteoclast formation, bone resorption, and kinase activation in vitro. Proceedings of the National Academy of Sciences, 96(1), 133–138. doi:10.1073/pnas.96.1.133, from http://www.pnas.org/content/96/1/133.full.pdf&amp;lt;/ref&amp;gt;. [[Image:Screen Shot 2016-12-04 at 8.23.53 PM.png|thumb|right|400px|Figure 6. Relationship between bisphosphonates and osteoclasts at individual stages of cellular life.&amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;]]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Though the exact chemical mechanism by which alendronate inhibits FPPS remains unclear, nitrogen-containing bisphosphates (&amp;lt;scene name=&#039;74/745950/Ligand/4&#039;&amp;gt;N-BP&amp;lt;/scene&amp;gt;s) bind to the dimethylallyl/geranyl pyrophosphate (DMAPP/GPP) ligand pocket (Fig. 3) and alter the secondary structure of the enzyme&amp;lt;ref&amp;gt;Kavanagh KL, Guo K, Dunford JE, Wu X, Knapp S, and Ebetino FH (2006). The molecular mechanism of nitrogen-containing bisphosphonates as antiosteoporosis drugs. Proceedings of the National Academy of Sciences. 103, 7829–34&amp;lt;/ref&amp;gt;. Specifically, alendronate may bind to the FPPS allylic substrate-binding pocket by ligating the Magnesium ion center via phosphonate oxyanion nucleophilic attack&amp;lt;ref&amp;gt;Hosfield DJ, Zhang Y, Dougan DR, Broun A, Tari LW, Swanson RV (2003). Structural Basis for Bisphosphonate-mediated Inhibition of Isoprenoid Biosynthesis. Journal of Biological Chemistry. 2279, 8526–9&amp;lt;/ref&amp;gt;. Phosphonate groups are stabilized by a cluster of three Mg2+ ions via oxyanion-metal cation charge interactions, as well as three FPPS-conserved aspartate residues located within two alpha helical motifs (&amp;lt;scene name=&#039;74/745950/Aspartates/4&#039;&amp;gt;Asp-103, 107, and 243&amp;lt;/scene&amp;gt;) that form a &amp;lt;scene name=&#039;74/745950/Correct_ligand_binding_site/8&#039;&amp;gt;magnesium-bisphosphonate chelate&amp;lt;/scene&amp;gt; (Fig. 4)&amp;lt;ref&amp;gt;Tarshis L. C., Yan M., Poulter C. D., Sacchettini J. C. (1994) Biochemistry. 33, 10871–10877.&amp;lt;/ref&amp;gt;. N-BPs may bind to the GPP substrate-binding site because N-BPs resemble the structure of the enzyme’s natural substrates (GPP and DMAPP) and act as carbocation transition state analogs (Fig. 5). Interactions between N-BP and amino acid residues (&amp;lt;scene name=&#039;74/745950/Lys200_thr201/4&#039;&amp;gt;Lys-200 and Thr-201&amp;lt;/scene&amp;gt;) suggest that these inhibitors &amp;lt;scene name=&#039;74/745950/Ligand_and_yellow/1&#039;&amp;gt;position their nitrogen group&amp;lt;/scene&amp;gt; in the carbocation-binding site, then mimic the carbocation intermediate formed via substrate ionization &amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;. By acting as a transition state analog for isoprenoid biosynthesis, Fosamax effectively increases the activation energy of a regulatory/rate-determining step in the mevalonate pathway, subsequently reducing the concentration of product molecules that aid the continuous biodegradation of skeletal tissue.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== References ==&lt;br /&gt;
&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Contributors and Editors ==&lt;br /&gt;
&lt;br /&gt;
[[User:Alyssa Jewel D. Floro|Floro, Alyssa Jewel D.]] [[User:Justin Myles Kidd|Kidd, Justin M.]] [[User:Osna M. Samady|Samady, Osna M.]]&lt;/div&gt;</summary>
		<author><name>Justin Myles Kidd</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Fosamax_(alendronate_sodium)&amp;diff=2688803</id>
		<title>Fosamax (alendronate sodium)</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Fosamax_(alendronate_sodium)&amp;diff=2688803"/>
		<updated>2016-12-06T18:33:32Z</updated>

		<summary type="html">&lt;p&gt;Justin Myles Kidd: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;scene name=&#039;74/745950/Correct_ligand_binding_site/8&#039;&amp;gt;&amp;lt;/scene&amp;gt;&amp;lt;scene name=&#039;74/745950/Correct_ligand_binding_site/3&#039;&amp;gt;&amp;lt;/scene&amp;gt;&amp;lt;table style=&amp;quot;width:200px; border:1px solid black; float:right; &amp;quot;&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td colspan=&amp;quot;2&amp;quot;&amp;gt;&amp;lt;center&amp;gt; FOSAMAX &amp;lt;/center&amp;gt;&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td colspan=&amp;quot;2&amp;quot;&amp;gt;&amp;lt;center&amp;gt;[[Image:Fosamax.gif|thumb|center|200px|Figure 1. Fosamax prescription drug, tablet form.]]&amp;lt;/center&amp;gt;&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Formula:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;C4H13NO7P2&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Molar Mass:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;249.097 g/mol&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;INN:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Alendronic Acid&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;USAN:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Alendronate sodium&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;IUPAC:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;4-amino-1-hydroxybutylidene) bisphosphonic acid monosodium salt trihydrate&lt;br /&gt;
&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;/table&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Fosamax (Alendronate Sodium or Alendronic Acid) is a pharmaceutical drug administered as an antiresorptive therapy agent for osteodegenerative diseases such as [https://en.wikipedia.org/wiki/Osteoporosis Osteoporosis], [https://en.wikipedia.org/wiki/Paget&#039;s_disease_of_bone Paget&#039;s disease], and [https://en.wikipedia.org/wiki/Osteogenesis_imperfecta osteogenesis imperfecta]&amp;lt;ref&amp;gt;Gong Li, Altman Russ B, Klein Teri E . &amp;quot;Bisphosphonates pathway&amp;quot; Pharmacogenetics and genomics (2011). from https://www.pharmgkb.org/pathway/PA154423660&amp;lt;/ref&amp;gt;.&lt;br /&gt;
Functioning as a nitrogen-containing, second generation [https://en.wikipedia.org/wiki/Bisphosphonate bisphosphonate], Fosamax binds to [https://en.wikipedia.org/wiki/Hydroxylapatite hydroxyapatite] in bone and promotes [https://en.wikipedia.org/wiki/Apoptosis apoptosis] in [https://en.wikipedia.org/wiki/Osteoclast osteoclasts] (cells specialized in skeletal breakdown), thereby delaying the degradation of osseous tissue. While incorporated in the bone matrix, alendronate is not pharmacologically active; therefore, it must be continuously administered to suppress osteoclasts on newly formed resorption surfaces &amp;lt;ref&amp;gt;Fosamax: Uses, Dosage &amp;amp; Side Effects - Drugs.com. (2016, November 3).Fosamax: Uses, Dosage &amp;amp; Side Effects - Drugs.com. Retrieved November 14, 2016, from https://www.drugs.com/fosamax.html&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
== History &amp;lt;ref&amp;gt;Fosamax (alendronate sodium). Fosamax New FDA Drug Approval | CenterWatch. Merck. Retrieved November 15, 2016, from http://www.centerwatch.com/drug-information/fda-approved-drugs/drug/26/fosamax-alendronate-sodium&amp;lt;/ref&amp;gt;==&lt;br /&gt;
Fosamax has been in use since September 29, 1995 after gaining [http://google2.fda.gov/search?q=fosamax&amp;amp;client=FDAgov&amp;amp;site=FDAgov&amp;amp;lr=&amp;amp;proxystylesheet=FDAgov&amp;amp;requiredfields=-archive%3AYes&amp;amp;output=xml_no_dtd&amp;amp;getfields=* Food and Drug Administration] (FDA) approval. The drug obtained FDA clearance based on data from five clinical trials, lasting two years, involving 1,827 postmenopausal women with osteoporosis in 16 different countries. The trials showed a significant increase in bone mineral density at the spine, hip, and other sites. Overall, the drug reduced the number of women with new spinal fractures by 48%, the total number of new spinal fractures by 63%, and reduced overall height loss by 35%. Today, the drug remains in circulation in caplet and liquid forms and attainable at most pharmaceutical distribution centers with an eligible prescription. &lt;br /&gt;
&lt;br /&gt;
== Side Effects &amp;lt;ref&amp;gt;Common Side Effects of Fosamax (Alendronate Sodium) Drug Center - RxList. (2015, August 26). RxList. Retrieved November 14, 2016, from  http://www.rxlist.com/fosamax-side-effects-drug-center.htm&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
Common side effects of Fosamax include gas, constipation, heartburn, diarrhea, bloating, nausea, vomiting, stomach pain, joint pain or swelling, swelling in your hands or feet, dizziness, headache, eye pain, back pain, or weakness.&lt;br /&gt;
Serious side effects of Fosamax include severe pain (joints, bone, muscle, jaw, back or heartburn), chest pain, difficulty swallowing, bloody stools, eye pain, skin blisters, and swelling of the face, tongue, or throat. &lt;br /&gt;
&lt;br /&gt;
== Structural Highlights &amp;lt;ref&amp;gt;Protein Data Bank in Europe: Bringing Structure to Biology, from http://www.ebi.ac.uk/pdbe/entry/pdb/2F89&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
As a bisphosphonate, Fosamax is a synthetic analog of [https://en.wikipedia.org/wiki/Pyrophosphate pyrophosphate], containing two phosphate groups on the central carbon. In its drug form, Fosamax includes a sodium bounded in place of a carboxyl hydrogen. In solution, oxyanions may form an ionic bond(s) with metal cations, such as magnesium. The central carbon is also attached to a hydroxyl group (-OH) and a three-carbon chain [-(CH2)3] leading to an amino group (-NH2) (Fig. 2).&lt;br /&gt;
&amp;lt;StructureSection load=&#039;2f89&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;Crystal Structure of human FPPS in complex with a bisphosphonate.&#039; scene=&#039;&#039;&amp;gt; [[Image:Screen Shot 2016-12-04 at 3.21.51 PM.png|thumb|left|200px|Figure 2. Chemical structure of Fosamax (alendronate sodium).]] &lt;br /&gt;
[[Image:Screen Shot 2016-12-02 at 3.24.13 PM.png|thumb|left|400px|Figure 3. DMAPP/GPP substrate/product site of SPSS-alendronate complex indicated by yellow eclipse.]]&lt;br /&gt;
[[Image:Screen Shot 2016-12-02 at 3.33.04 PM.png|thumb|left|400px|Figure 4. Aspartate-Magnesium cation-phosphonate chelate within FPPS-alendronate complex. Pink sphere indicates Mg2+ ion; red indicates oxygen atom, yellow indicates phosphorous atom, blue (bond-line) indicates nitrogen, blue (ribbon) indicates alpha helix motif.]] [[Image:Screen Shot 2016-12-04 at 8.42.20 PM.png|thumb|left|500px|Figure 5. Comparison between the structure of the carbocation transition states of DMAPP and GPP to the nitrogen-containing bisphosphonate alendronate. Close similarity suggests that Fosamax acts as carbocation transition state analog of isoprenoid diphosphates &amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;.]]&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Mechanism of Action ==&lt;br /&gt;
Functioning as a nitrogen-containing, second generation bisphosphonate, Fosamax binds to hydroxyapatite in bone and promotes apoptosis in osteoclasts (cells specialized in skeletal breakdown) (Fig. 6), thus slowing the breakdown of osseous tissue&amp;lt;ref&amp;gt;Drake, Matthew T., Bart L. Clarke, and Sundeep Khosla. &amp;quot;Bisphosphonates: Mechanism of Action and Role in Clinical Practice.&amp;quot; Mayo Clinic Proceedings 83, no. 9 (2008): 1032-045. doi:10.4065/83.9.1032.&amp;lt;/ref&amp;gt;. In order to accomplish this, Fosamax inhibits [http://www.uniprot.org/uniprot/P14324 farnesyl pyrophosphate synthase] (FPPS), an enzyme which plays a role within the [https://en.wikipedia.org/wiki/Mevalonate_pathway mevalonic acid pathway], thereby reducing the production rate of isoprenoid compounds that are essential for post-translational modification of small guanosine triphosphate (GTP)-binding proteins (e.g. Rho, Rab and [https://pdb101.rcsb.org/motm/148 Ras])&amp;lt;ref&amp;gt;Luckman SP, Hughes DE, Coxon FP, Russell RGG, Rogers MJ (2005). Nitrogen-Containing Biphosphonates Inhibit the Mevalonate Pathway and Prevent Post-Translational Prenylation of GTP-Binding Proteins, Including Ras. Journal of Bone and Mineral Research. 20, 1265–74&amp;lt;/ref&amp;gt;. By inhibiting FPPS, Fosamax discourages the successive condensation of isopentenyl pyrophosphate with dimethylallyl pyrophosphate to geranyl pyrophosphate, which interferes with osteoclast function and survival &amp;lt;ref&amp;gt;Alendronic acid. (2005, June 13), from http://www.drugbank.ca/drugs/DB00630#bond-15126&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;Fisher, J. E., Rogers, M. J., Halasy, J. M., Luckman, S. P., Hughes, D. E., Masarachia, P. J., … Reszka, A. A. (1999). Alendronate mechanism of action: geranylgeraniol, an intermediate in the mevalonate pathway, prevents inhibition of osteoclast formation, bone resorption, and kinase activation in vitro. Proceedings of the National Academy of Sciences, 96(1), 133–138. doi:10.1073/pnas.96.1.133, from http://www.pnas.org/content/96/1/133.full.pdf&amp;lt;/ref&amp;gt;. [[Image:Screen Shot 2016-12-04 at 8.23.53 PM.png|thumb|right|400px|Figure 6. Relationship between bisphosphonates and osteoclasts at individual stages of cellular life.&amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;]]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Though the exact chemical mechanism by which alendronate inhibits FPPS remains unclear, nitrogen-containing bisphosphates (&amp;lt;scene name=&#039;74/745950/Ligand/4&#039;&amp;gt;N-BP&amp;lt;/scene&amp;gt;s) bind to the dimethylallyl/geranyl pyrophosphate (DMAPP/GPP) ligand pocket (Fig. 3) and alter the secondary structure of the enzyme&amp;lt;ref&amp;gt;Kavanagh KL, Guo K, Dunford JE, Wu X, Knapp S, and Ebetino FH (2006). The molecular mechanism of nitrogen-containing bisphosphonates as antiosteoporosis drugs. Proceedings of the National Academy of Sciences. 103, 7829–34&amp;lt;/ref&amp;gt;. Specifically, alendronate may bind to the FPPS allylic substrate-binding pocket by ligating the Magnesium ion center via phosphonate oxyanion nucleophilic attack&amp;lt;ref&amp;gt;Hosfield DJ, Zhang Y, Dougan DR, Broun A, Tari LW, Swanson RV (2003). Structural Basis for Bisphosphonate-mediated Inhibition of Isoprenoid Biosynthesis. Journal of Biological Chemistry. 2279, 8526–9&amp;lt;/ref&amp;gt;. Phosphonate groups are stabilized by a cluster of three Mg2+ ions via oxyanion-metal cation charge interactions, as well as three FPPS-conserved aspartate residues located within two alpha helical motifs (&amp;lt;scene name=&#039;74/745950/Aspartates/4&#039;&amp;gt;Asp-103, 107, and 243&amp;lt;/scene&amp;gt;) that form a &amp;lt;scene name=&#039;74/745950/Correct_ligand_binding_site/8&#039;&amp;gt;magnesium-bisphosphonate chelate&amp;lt;/scene&amp;gt; (Fig. 4)&amp;lt;ref&amp;gt;Tarshis L. C., Yan M., Poulter C. D., Sacchettini J. C. (1994) Biochemistry. 33, 10871–10877.&amp;lt;/ref&amp;gt;. N-BPs may bind to the GPP substrate-binding site because N-BPs resemble the structure of the enzyme’s natural substrates (GPP and DMAPP) and act as carbocation transition state analogs (Fig. 5). Interactions between N-BP and amino acid residues (&amp;lt;scene name=&#039;74/745950/Lys200_thr201/4&#039;&amp;gt;Lys-200 and The-201&amp;lt;/scene&amp;gt;) suggest that these inhibitors &amp;lt;scene name=&#039;74/745950/Ligand_and_yellow/1&#039;&amp;gt;position their nitrogen group&amp;lt;/scene&amp;gt; in the carbocation-binding site, then mimic the carbocation intermediate formed via substrate ionization &amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;. By acting as a transition state analog for isoprenoid biosynthesis, Fosamax effectively increases the activation energy of a regulatory/rate-determining step in the mevalonate pathway, subsequently reducing the concentration of product molecules that aid the continuous biodegradation of skeletal tissue.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== References ==&lt;br /&gt;
&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Contributors and Editors ==&lt;br /&gt;
&lt;br /&gt;
[[User:Alyssa Jewel D. Floro|Floro, Alyssa Jewel D.]] [[User:Justin Myles Kidd|Kidd, Justin M.]] [[User:Osna M. Samady|Samady, Osna M.]]&lt;/div&gt;</summary>
		<author><name>Justin Myles Kidd</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Fosamax_(alendronate_sodium)&amp;diff=2688802</id>
		<title>Fosamax (alendronate sodium)</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Fosamax_(alendronate_sodium)&amp;diff=2688802"/>
		<updated>2016-12-06T18:28:32Z</updated>

		<summary type="html">&lt;p&gt;Justin Myles Kidd: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;scene name=&#039;74/745950/Correct_ligand_binding_site/8&#039;&amp;gt;&amp;lt;/scene&amp;gt;&amp;lt;scene name=&#039;74/745950/Correct_ligand_binding_site/3&#039;&amp;gt;&amp;lt;/scene&amp;gt;&amp;lt;table style=&amp;quot;width:200px; border:1px solid black; float:right; &amp;quot;&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td colspan=&amp;quot;2&amp;quot;&amp;gt;&amp;lt;center&amp;gt; FOSAMAX &amp;lt;/center&amp;gt;&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td colspan=&amp;quot;2&amp;quot;&amp;gt;&amp;lt;center&amp;gt;[[Image:Fosamax.gif|thumb|center|200px|Figure 1. Fosamax prescription drug, tablet form.]]&amp;lt;/center&amp;gt;&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Formula:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;C4H13NO7P2&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Molar Mass:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;249.097 g/mol&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;INN:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Alendronic Acid&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;USAN:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Alendronate sodium&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;IUPAC:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;4-amino-1-hydroxybutylidene) bisphosphonic acid monosodium salt trihydrate&lt;br /&gt;
&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;/table&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Fosamax (Alendronate Sodium or Alendronic Acid) is a pharmaceutical drug administered as an antiresorptive therapy agent for osteodegenerative diseases such as [https://en.wikipedia.org/wiki/Osteoporosis Osteoporosis], [https://en.wikipedia.org/wiki/Paget&#039;s_disease_of_bone Paget&#039;s disease], and [https://en.wikipedia.org/wiki/Osteogenesis_imperfecta osteogenesis imperfecta]&amp;lt;ref&amp;gt;Gong Li, Altman Russ B, Klein Teri E . &amp;quot;Bisphosphonates pathway&amp;quot; Pharmacogenetics and genomics (2011). from https://www.pharmgkb.org/pathway/PA154423660&amp;lt;/ref&amp;gt;.&lt;br /&gt;
Functioning as a nitrogen-containing, second generation [https://en.wikipedia.org/wiki/Bisphosphonate bisphosphonate], Fosamax binds to [https://en.wikipedia.org/wiki/Hydroxylapatite hydroxyapatite] in bone and promotes [https://en.wikipedia.org/wiki/Apoptosis apoptosis] in [https://en.wikipedia.org/wiki/Osteoclast osteoclasts] (cells specialized in skeletal breakdown), thereby delaying the degradation of osseous tissue. While incorporated in the bone matrix, alendronate is not pharmacologically active; therefore, it must be continuously administered to suppress osteoclasts on newly formed resorption surfaces &amp;lt;ref&amp;gt;Fosamax: Uses, Dosage &amp;amp; Side Effects - Drugs.com. (2016, November 3).Fosamax: Uses, Dosage &amp;amp; Side Effects - Drugs.com. Retrieved November 14, 2016, from https://www.drugs.com/fosamax.html&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
== History &amp;lt;ref&amp;gt;Fosamax (alendronate sodium). Fosamax New FDA Drug Approval | CenterWatch. Merck. Retrieved November 15, 2016, from http://www.centerwatch.com/drug-information/fda-approved-drugs/drug/26/fosamax-alendronate-sodium&amp;lt;/ref&amp;gt;==&lt;br /&gt;
Fosamax has been in use since September 29, 1995 after gaining [http://google2.fda.gov/search?q=fosamax&amp;amp;client=FDAgov&amp;amp;site=FDAgov&amp;amp;lr=&amp;amp;proxystylesheet=FDAgov&amp;amp;requiredfields=-archive%3AYes&amp;amp;output=xml_no_dtd&amp;amp;getfields=* Food and Drug Administration] (FDA) approval. The drug obtained FDA clearance based on data from five clinical trials, lasting two years, involving 1,827 postmenopausal women with osteoporosis in 16 different countries. The trials showed a significant increase in bone mineral density at the spine, hip, and other sites. Overall, the drug reduced the number of women with new spinal fractures by 48%, the total number of new spinal fractures by 63%, and reduced overall height loss by 35%. Today, the drug remains in circulation in caplet and liquid forms and attainable at most pharmaceutical distribution centers with an eligible prescription. &lt;br /&gt;
&lt;br /&gt;
== Side Effects &amp;lt;ref&amp;gt;Common Side Effects of Fosamax (Alendronate Sodium) Drug Center - RxList. (2015, August 26). RxList. Retrieved November 14, 2016, from  http://www.rxlist.com/fosamax-side-effects-drug-center.htm&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
Common side effects of Fosamax include gas, constipation, heartburn, diarrhea, bloating, nausea, vomiting, stomach pain, joint pain or swelling, swelling in your hands or feet, dizziness, headache, eye pain, back pain, or weakness.&lt;br /&gt;
Serious side effects of Fosamax include severe pain (joints, bone, muscle, jaw, back or heartburn), chest pain, difficulty swallowing, bloody stools, eye pain, skin blisters, and swelling of the face, tongue, or throat. &lt;br /&gt;
&lt;br /&gt;
== Structural Highlights &amp;lt;ref&amp;gt;Protein Data Bank in Europe: Bringing Structure to Biology, from http://www.ebi.ac.uk/pdbe/entry/pdb/2F89&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
As a bisphosphonate, Fosamax is a synthetic analog of [https://en.wikipedia.org/wiki/Pyrophosphate pyrophosphate], containing two phosphate groups on the central carbon. In its drug form, Fosamax includes a sodium bounded in place of a carboxyl hydrogen. In solution, oxyanions may form an ionic bond(s) with metal cations, such as magnesium. The central carbon is also attached to a hydroxyl group (-OH) and a three-carbon chain [-(CH2)3] leading to an amino group (-NH2) (Fig. 2).&lt;br /&gt;
&amp;lt;StructureSection load=&#039;2f89&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;Crystal Structure of human FPPS in complex with a bisphosphonate.&#039; scene=&#039;&#039;&amp;gt; [[Image:Screen Shot 2016-12-04 at 3.21.51 PM.png|thumb|left|200px|Figure 2. Chemical structure of Fosamax (alendronate sodium).]] &lt;br /&gt;
[[Image:Screen Shot 2016-12-02 at 3.24.13 PM.png|thumb|left|400px|Figure 3. DMAPP/GPP substrate/product site of SPSS-alendronate complex indicated by yellow eclipse.]]&lt;br /&gt;
[[Image:Screen Shot 2016-12-02 at 3.33.04 PM.png|thumb|left|400px|Figure 4. Aspartate-Magnesium cation-phosphonate chelate within FPPS-alendronate complex. Pink sphere indicates Mg2+ ion; red indicates oxygen atom, yellow indicates phosphorous atom, blue (bond-line) indicates nitrogen, blue (ribbon) indicates alpha helix motif.]] [[Image:Screen Shot 2016-12-04 at 8.42.20 PM.png|thumb|left|500px|Figure 5. Comparison between the structure of the carbocation transition states of DMAPP and GPP to the nitrogen-containing bisphosphonate alendronate. Close similarity suggests that Fosamax acts as carbocation transition state analog of isoprenoid diphosphates &amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;.]]&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Mechanism of Action ==&lt;br /&gt;
Functioning as a nitrogen-containing, second generation bisphosphonate, Fosamax binds to hydroxyapatite in bone and promotes apoptosis in osteoclasts (cells specialized in skeletal breakdown) (Fig. 6), thus slowing the breakdown of osseous tissue&amp;lt;ref&amp;gt;Drake, Matthew T., Bart L. Clarke, and Sundeep Khosla. &amp;quot;Bisphosphonates: Mechanism of Action and Role in Clinical Practice.&amp;quot; Mayo Clinic Proceedings 83, no. 9 (2008): 1032-045. doi:10.4065/83.9.1032.&amp;lt;/ref&amp;gt;. In order to accomplish this, Fosamax inhibits [http://www.uniprot.org/uniprot/P14324 farnesyl pyrophosphate synthase] (FPPS), an enzyme which plays a role within the [https://en.wikipedia.org/wiki/Mevalonate_pathway mevalonic acid pathway], thereby reducing the production rate of isoprenoid compounds that are essential for post-translational modification of small guanosine triphosphate (GTP)-binding proteins (e.g. Rho, Rab and [https://pdb101.rcsb.org/motm/148 Ras])&amp;lt;ref&amp;gt;Luckman SP, Hughes DE, Coxon FP, Russell RGG, Rogers MJ (2005). Nitrogen-Containing Biphosphonates Inhibit the Mevalonate Pathway and Prevent Post-Translational Prenylation of GTP-Binding Proteins, Including Ras. Journal of Bone and Mineral Research. 20, 1265–74&amp;lt;/ref&amp;gt;. By inhibiting FPPS, Fosamax discourages the successive condensation of isopentenyl pyrophosphate with dimethylallyl pyrophosphate to geranyl pyrophosphate, which interferes with osteoclast function and survival &amp;lt;ref&amp;gt;Alendronic acid. (2005, June 13), from http://www.drugbank.ca/drugs/DB00630#bond-15126&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;Fisher, J. E., Rogers, M. J., Halasy, J. M., Luckman, S. P., Hughes, D. E., Masarachia, P. J., … Reszka, A. A. (1999). Alendronate mechanism of action: geranylgeraniol, an intermediate in the mevalonate pathway, prevents inhibition of osteoclast formation, bone resorption, and kinase activation in vitro. Proceedings of the National Academy of Sciences, 96(1), 133–138. doi:10.1073/pnas.96.1.133, from http://www.pnas.org/content/96/1/133.full.pdf&amp;lt;/ref&amp;gt;. [[Image:Screen Shot 2016-12-04 at 8.23.53 PM.png|thumb|right|400px|Figure 6. Relationship between bisphosphonates and osteoclasts at individual stages of cellular life.&amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;]]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Though the exact chemical mechanism by which alendronate inhibits FPPS remains unclear, nitrogen-containing bisphosphates (&amp;lt;scene name=&#039;74/745950/Ligand/4&#039;&amp;gt;N-BP&amp;lt;/scene&amp;gt;s) bind to the dimethylallyl/geranyl pyrophosphate (DMAPP/GPP) ligand pocket (Fig. 3) and alter the secondary structure of the enzyme&amp;lt;ref&amp;gt;Kavanagh KL, Guo K, Dunford JE, Wu X, Knapp S, and Ebetino FH (2006). The molecular mechanism of nitrogen-containing bisphosphonates as antiosteoporosis drugs. Proceedings of the National Academy of Sciences. 103, 7829–34&amp;lt;/ref&amp;gt;. Specifically, alendronate may bind to the FPPS allylic substrate-binding pocket by ligating the Magnesium ion center via phosphonate oxyanion nucleophilic attack&amp;lt;ref&amp;gt;Hosfield DJ, Zhang Y, Dougan DR, Broun A, Tari LW, Swanson RV (2003). Structural Basis for Bisphosphonate-mediated Inhibition of Isoprenoid Biosynthesis. Journal of Biological Chemistry. 2279, 8526–9&amp;lt;/ref&amp;gt;. Phosphonate groups are stabilized by a cluster of three Mg2+ ions via oxyanion-metal cation charge interactions, as well as three FPPS-conserved aspartate residues located within two alpha helical motifs (&amp;lt;scene name=&#039;74/745950/Aspartates/4&#039;&amp;gt;Asp-103, 107, and 243&amp;lt;/scene&amp;gt;) that form a &amp;lt;scene name=&#039;74/745950/Correct_ligand_binding_site/8&#039;&amp;gt;magnesium-bisphosphonate chelate&amp;lt;/scene&amp;gt; (Fig. 4)&amp;lt;ref&amp;gt;Tarshis L. C., Yan M., Poulter C. D., Sacchettini J. C. (1994) Biochemistry. 33, 10871–10877.&amp;lt;/ref&amp;gt;. N-BPs may bind to the GPP substrate-binding site because N-BPs resemble the structure of the enzyme’s natural substrates (GPP and DMAPP) and act as carbocation transition state analogs (Fig. 5). Interactions between N-BP and amino acid residues (&amp;lt;scene name=&#039;74/745950/Lys200_thr201/3&#039;&amp;gt;Thr-201 and Lys-200&amp;lt;/scene&amp;gt;) suggest that these inhibitors &amp;lt;scene name=&#039;74/745950/Ligand_and_yellow/1&#039;&amp;gt;position their nitrogen group&amp;lt;/scene&amp;gt; in the carbocation-binding site, then mimic the carbocation intermediate formed via substrate ionization &amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;. By acting as a transition state analog for isoprenoid biosynthesis, Fosamax effectively increases the activation energy of a regulatory/rate-determining step in the mevalonate pathway, subsequently reducing the concentration of product molecules that aid the continuous biodegradation of skeletal tissue.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== References ==&lt;br /&gt;
&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Contributors and Editors ==&lt;br /&gt;
&lt;br /&gt;
[[User:Alyssa Jewel D. Floro|Floro, Alyssa Jewel D.]] [[User:Justin Myles Kidd|Kidd, Justin M.]] [[User:Osna M. Samady|Samady, Osna M.]]&lt;/div&gt;</summary>
		<author><name>Justin Myles Kidd</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Fosamax_(alendronate_sodium)&amp;diff=2688801</id>
		<title>Fosamax (alendronate sodium)</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Fosamax_(alendronate_sodium)&amp;diff=2688801"/>
		<updated>2016-12-06T18:26:51Z</updated>

		<summary type="html">&lt;p&gt;Justin Myles Kidd: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;scene name=&#039;74/745950/Correct_ligand_binding_site/8&#039;&amp;gt;&amp;lt;/scene&amp;gt;&amp;lt;scene name=&#039;74/745950/Correct_ligand_binding_site/3&#039;&amp;gt;&amp;lt;/scene&amp;gt;&amp;lt;table style=&amp;quot;width:200px; border:1px solid black; float:right; &amp;quot;&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td colspan=&amp;quot;2&amp;quot;&amp;gt;&amp;lt;center&amp;gt; FOSAMAX &amp;lt;/center&amp;gt;&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td colspan=&amp;quot;2&amp;quot;&amp;gt;&amp;lt;center&amp;gt;[[Image:Fosamax.gif|thumb|center|200px|Figure 1. Fosamax prescription drug, tablet form.]]&amp;lt;/center&amp;gt;&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Formula:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;C4H13NO7P2&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Molar Mass:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;249.097 g/mol&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;INN:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Alendronic Acid&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;USAN:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Alendronate sodium&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;IUPAC:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;4-amino-1-hydroxybutylidene) bisphosphonic acid monosodium salt trihydrate&lt;br /&gt;
&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;/table&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Fosamax (Alendronate Sodium or Alendronic Acid) is a pharmaceutical drug administered as an antiresorptive therapy agent for osteodegenerative diseases such as [https://en.wikipedia.org/wiki/Osteoporosis Osteoporosis], [https://en.wikipedia.org/wiki/Paget&#039;s_disease_of_bone Paget&#039;s disease], and [https://en.wikipedia.org/wiki/Osteogenesis_imperfecta osteogenesis imperfecta]&amp;lt;ref&amp;gt;Gong Li, Altman Russ B, Klein Teri E . &amp;quot;Bisphosphonates pathway&amp;quot; Pharmacogenetics and genomics (2011). from https://www.pharmgkb.org/pathway/PA154423660&amp;lt;/ref&amp;gt;.&lt;br /&gt;
Functioning as a nitrogen-containing, second generation [https://en.wikipedia.org/wiki/Bisphosphonate bisphosphonate], Fosamax binds to [https://en.wikipedia.org/wiki/Hydroxylapatite hydroxyapatite] in bone and promotes [https://en.wikipedia.org/wiki/Apoptosis apoptosis] in [https://en.wikipedia.org/wiki/Osteoclast osteoclasts] (cells specialized in skeletal breakdown), thereby delaying the degradation of osseous tissue. While incorporated in the bone matrix, alendronate is not pharmacologically active; therefore, it must be continuously administered to suppress osteoclasts on newly formed resorption surfaces &amp;lt;ref&amp;gt;Fosamax: Uses, Dosage &amp;amp; Side Effects - Drugs.com. (2016, November 3).Fosamax: Uses, Dosage &amp;amp; Side Effects - Drugs.com. Retrieved November 14, 2016, from https://www.drugs.com/fosamax.html&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
== History &amp;lt;ref&amp;gt;Fosamax (alendronate sodium). Fosamax New FDA Drug Approval | CenterWatch. Merck. Retrieved November 15, 2016, from http://www.centerwatch.com/drug-information/fda-approved-drugs/drug/26/fosamax-alendronate-sodium&amp;lt;/ref&amp;gt;==&lt;br /&gt;
Fosamax has been in use since September 29, 1995 after gaining [http://google2.fda.gov/search?q=fosamax&amp;amp;client=FDAgov&amp;amp;site=FDAgov&amp;amp;lr=&amp;amp;proxystylesheet=FDAgov&amp;amp;requiredfields=-archive%3AYes&amp;amp;output=xml_no_dtd&amp;amp;getfields=* Food and Drug Administration] (FDA) approval. The drug obtained FDA clearance based on data from five clinical trials, lasting two years, involving 1,827 postmenopausal women with osteoporosis in 16 different countries. The trials showed a significant increase in bone mineral density at the spine, hip, and other sites. Overall, the drug reduced the number of women with new spinal fractures by 48%, the total number of new spinal fractures by 63%, and reduced overall height loss by 35%. Today, the drug remains in circulation in caplet and liquid forms and attainable at most pharmaceutical distribution centers with an eligible prescription. &lt;br /&gt;
&lt;br /&gt;
== Side Effects &amp;lt;ref&amp;gt;Common Side Effects of Fosamax (Alendronate Sodium) Drug Center - RxList. (2015, August 26). RxList. Retrieved November 14, 2016, from  http://www.rxlist.com/fosamax-side-effects-drug-center.htm&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
Common side effects of Fosamax include gas, constipation, heartburn, diarrhea, bloating, nausea, vomiting, stomach pain, joint pain or swelling, swelling in your hands or feet, dizziness, headache, eye pain, back pain, or weakness.&lt;br /&gt;
Serious side effects of Fosamax include severe pain (joints, bone, muscle, jaw, back or heartburn), chest pain, difficulty swallowing, bloody stools, eye pain, skin blisters, and swelling of the face, tongue, or throat. &lt;br /&gt;
&lt;br /&gt;
== Structural Highlights &amp;lt;ref&amp;gt;Protein Data Bank in Europe: Bringing Structure to Biology, from http://www.ebi.ac.uk/pdbe/entry/pdb/2F89&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
As a bisphosphonate, Fosamax is a synthetic analog of [https://en.wikipedia.org/wiki/Pyrophosphate pyrophosphate], containing two phosphate groups on the central carbon. In its drug form, Fosamax includes a sodium bounded in place of a carboxyl hydrogen. In solution, oxyanions may form an ionic bond(s) with metal cations, such as magnesium. The central carbon is also attached to a hydroxyl group (-OH) and a three-carbon chain [-(CH2)3] leading to an amino group (-NH2) (Fig. 2).&lt;br /&gt;
&amp;lt;StructureSection load=&#039;2f89&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;Crystal Structure of human FPPS in complex with a bisphosphonate.&#039; scene=&#039;&#039;&amp;gt; [[Image:Screen Shot 2016-12-04 at 3.21.51 PM.png|thumb|left|200px|Figure 2. Chemical structure of Fosamax (alendronate sodium).]] &lt;br /&gt;
[[Image:Screen Shot 2016-12-02 at 3.24.13 PM.png|thumb|left|400px|Figure 3. DMAPP/GPP substrate/product site of SPSS-alendronate complex indicated by yellow eclipse.]]&lt;br /&gt;
[[Image:Screen Shot 2016-12-02 at 3.33.04 PM.png|thumb|left|400px|Figure 4. Aspartate-Magnesium cation-phosphonate chelate within FPPS-alendronate complex. Pink sphere indicates Mg2+ ion; red indicates oxygen atom, yellow indicates phosphorous atom, blue (bond-line) indicates nitrogen, blue (ribbon) indicates alpha helix motif.]] [[Image:Screen Shot 2016-12-04 at 8.42.20 PM.png|thumb|left|500px|Figure 5. Comparison between the structure of the carbocation transition states of DMAPP and GPP to the nitrogen-containing bisphosphonate alendronate. Close similarity suggests that Fosamax acts as carbocation transition state analog of isoprenoid diphosphates &amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;.]]&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Mechanism of Action ==&lt;br /&gt;
Functioning as a nitrogen-containing, second generation bisphosphonate, Fosamax binds to hydroxyapatite in bone and promotes apoptosis in osteoclasts (cells specialized in skeletal breakdown) (Fig. 6), thus slowing the breakdown of osseous tissue&amp;lt;ref&amp;gt;Drake, Matthew T., Bart L. Clarke, and Sundeep Khosla. &amp;quot;Bisphosphonates: Mechanism of Action and Role in Clinical Practice.&amp;quot; Mayo Clinic Proceedings 83, no. 9 (2008): 1032-045. doi:10.4065/83.9.1032.&amp;lt;/ref&amp;gt;. In order to accomplish this, Fosamax inhibits [http://www.uniprot.org/uniprot/P14324 farnesyl pyrophosphate synthase] (FPPS), an enzyme which plays a role within the [https://en.wikipedia.org/wiki/Mevalonate_pathway mevalonic acid pathway], thereby reducing the production rate of isoprenoid compounds that are essential for post-translational modification of small guanosine triphosphate (GTP)-binding proteins (e.g. Rho, Rab and [https://pdb101.rcsb.org/motm/148 Ras])&amp;lt;ref&amp;gt;Luckman SP, Hughes DE, Coxon FP, Russell RGG, Rogers MJ (2005). Nitrogen-Containing Biphosphonates Inhibit the Mevalonate Pathway and Prevent Post-Translational Prenylation of GTP-Binding Proteins, Including Ras. Journal of Bone and Mineral Research. 20, 1265–74&amp;lt;/ref&amp;gt;. By inhibiting FPPS, Fosamax discourages the successive condensation of isopentenyl pyrophosphate with dimethylallyl pyrophosphate to geranyl pyrophosphate, which interferes with osteoclast function and survival &amp;lt;ref&amp;gt;Alendronic acid. (2005, June 13), from http://www.drugbank.ca/drugs/DB00630#bond-15126&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;Fisher, J. E., Rogers, M. J., Halasy, J. M., Luckman, S. P., Hughes, D. E., Masarachia, P. J., … Reszka, A. A. (1999). Alendronate mechanism of action: geranylgeraniol, an intermediate in the mevalonate pathway, prevents inhibition of osteoclast formation, bone resorption, and kinase activation in vitro. Proceedings of the National Academy of Sciences, 96(1), 133–138. doi:10.1073/pnas.96.1.133, from http://www.pnas.org/content/96/1/133.full.pdf&amp;lt;/ref&amp;gt;. [[Image:Screen Shot 2016-12-04 at 8.23.53 PM.png|thumb|right|400px|Figure 6. Relationship between bisphosphonates and osteoclasts at individual stages of cellular life.&amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;]]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Though the exact chemical mechanism by which alendronate inhibits FPPS remains unclear, nitrogen-containing bisphosphates (&amp;lt;scene name=&#039;74/745950/Ligand/4&#039;&amp;gt;N-BP&amp;lt;/scene&amp;gt;s) bind to the dimethylallyl/geranyl pyrophosphate (DMAPP/GPP) ligand pocket (Fig. 3) and alter the secondary structure of the enzyme&amp;lt;ref&amp;gt;Kavanagh KL, Guo K, Dunford JE, Wu X, Knapp S, and Ebetino FH (2006). The molecular mechanism of nitrogen-containing bisphosphonates as antiosteoporosis drugs. Proceedings of the National Academy of Sciences. 103, 7829–34&amp;lt;/ref&amp;gt;. Specifically, alendronate may bind to the FPPS allylic substrate-binding pocket by ligating the Magnesium ion center via phosphonate oxyanion nucleophilic attack&amp;lt;ref&amp;gt;Hosfield DJ, Zhang Y, Dougan DR, Broun A, Tari LW, Swanson RV (2003). Structural Basis for Bisphosphonate-mediated Inhibition of Isoprenoid Biosynthesis. Journal of Biological Chemistry. 2279, 8526–9&amp;lt;/ref&amp;gt;. Phosphonate groups are stabilized by a cluster of three Mg2+ ions via oxyanion-metal cation charge interactions, as well as three FPPS-conserved aspartate residues located within two alpha helical motifs (&amp;lt;scene name=&#039;74/745950/Aspartates/2&#039;&amp;gt;Asp-103, 107, and 243&amp;lt;/scene&amp;gt;) that form a &amp;lt;scene name=&#039;74/745950/Correct_ligand_binding_site/8&#039;&amp;gt;magnesium-bisphosphonate chelate&amp;lt;/scene&amp;gt; (Fig. 4)&amp;lt;ref&amp;gt;Tarshis L. C., Yan M., Poulter C. D., Sacchettini J. C. (1994) Biochemistry. 33, 10871–10877.&amp;lt;/ref&amp;gt;. N-BPs may bind to the GPP substrate-binding site because N-BPs resemble the structure of the enzyme’s natural substrates (GPP and DMAPP) and act as carbocation transition state analogs (Fig. 5). Interactions between N-BP and amino acid residues (&amp;lt;scene name=&#039;74/745950/Lys200_thr201/3&#039;&amp;gt;Thr-201 and Lys-200&amp;lt;/scene&amp;gt;) suggest that these inhibitors &amp;lt;scene name=&#039;74/745950/Ligand_and_yellow/1&#039;&amp;gt;position their nitrogen group&amp;lt;/scene&amp;gt; in the carbocation-binding site, then mimic the carbocation intermediate formed via substrate ionization &amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;. By acting as a transition state analog for isoprenoid biosynthesis, Fosamax effectively increases the activation energy of a regulatory/rate-determining step in the mevalonate pathway, subsequently reducing the concentration of product molecules that aid the continuous biodegradation of skeletal tissue.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== References ==&lt;br /&gt;
&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Contributors and Editors ==&lt;br /&gt;
&lt;br /&gt;
[[User:Alyssa Jewel D. Floro|Floro, Alyssa Jewel D.]] [[User:Justin Myles Kidd|Kidd, Justin M.]] [[User:Osna M. Samady|Samady, Osna M.]]&lt;/div&gt;</summary>
		<author><name>Justin Myles Kidd</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Fosamax_(alendronate_sodium)&amp;diff=2688799</id>
		<title>Fosamax (alendronate sodium)</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Fosamax_(alendronate_sodium)&amp;diff=2688799"/>
		<updated>2016-12-06T18:20:34Z</updated>

		<summary type="html">&lt;p&gt;Justin Myles Kidd: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;scene name=&#039;74/745950/Correct_ligand_binding_site/8&#039;&amp;gt;&amp;lt;/scene&amp;gt;&amp;lt;scene name=&#039;74/745950/Correct_ligand_binding_site/3&#039;&amp;gt;&amp;lt;/scene&amp;gt;&amp;lt;table style=&amp;quot;width:200px; border:1px solid black; float:right; &amp;quot;&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td colspan=&amp;quot;2&amp;quot;&amp;gt;&amp;lt;center&amp;gt; FOSAMAX &amp;lt;/center&amp;gt;&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td colspan=&amp;quot;2&amp;quot;&amp;gt;&amp;lt;center&amp;gt;[[Image:Fosamax.gif|thumb|center|200px|Figure 1. Fosamax prescription drug, tablet form.]]&amp;lt;/center&amp;gt;&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Formula:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;C4H13NO7P2&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Molar Mass:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;249.097 g/mol&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;INN:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Alendronic Acid&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;USAN:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Alendronate sodium&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;IUPAC:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;4-amino-1-hydroxybutylidene) bisphosphonic acid monosodium salt trihydrate&lt;br /&gt;
&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;/table&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Fosamax (Alendronate Sodium or Alendronic Acid) is a pharmaceutical drug administered as an antiresorptive therapy agent for osteodegenerative diseases such as [https://en.wikipedia.org/wiki/Osteoporosis Osteoporosis], [https://en.wikipedia.org/wiki/Paget&#039;s_disease_of_bone Paget&#039;s disease], and [https://en.wikipedia.org/wiki/Osteogenesis_imperfecta osteogenesis imperfecta]&amp;lt;ref&amp;gt;Gong Li, Altman Russ B, Klein Teri E . &amp;quot;Bisphosphonates pathway&amp;quot; Pharmacogenetics and genomics (2011). from https://www.pharmgkb.org/pathway/PA154423660&amp;lt;/ref&amp;gt;.&lt;br /&gt;
Functioning as a nitrogen-containing, second generation [https://en.wikipedia.org/wiki/Bisphosphonate bisphosphonate], Fosamax binds to [https://en.wikipedia.org/wiki/Hydroxylapatite hydroxyapatite] in bone and promotes [https://en.wikipedia.org/wiki/Apoptosis apoptosis] in [https://en.wikipedia.org/wiki/Osteoclast osteoclasts] (cells specialized in skeletal breakdown), thereby delaying the degradation of osseous tissue. While incorporated in the bone matrix, alendronate is not pharmacologically active; therefore, it must be continuously administered to suppress osteoclasts on newly formed resorption surfaces &amp;lt;ref&amp;gt;Fosamax: Uses, Dosage &amp;amp; Side Effects - Drugs.com. (2016, November 3).Fosamax: Uses, Dosage &amp;amp; Side Effects - Drugs.com. Retrieved November 14, 2016, from https://www.drugs.com/fosamax.html&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
== History &amp;lt;ref&amp;gt;Fosamax (alendronate sodium). Fosamax New FDA Drug Approval | CenterWatch. Merck. Retrieved November 15, 2016, from http://www.centerwatch.com/drug-information/fda-approved-drugs/drug/26/fosamax-alendronate-sodium&amp;lt;/ref&amp;gt;==&lt;br /&gt;
Fosamax has been in use since September 29, 1995 after gaining [http://google2.fda.gov/search?q=fosamax&amp;amp;client=FDAgov&amp;amp;site=FDAgov&amp;amp;lr=&amp;amp;proxystylesheet=FDAgov&amp;amp;requiredfields=-archive%3AYes&amp;amp;output=xml_no_dtd&amp;amp;getfields=* Food and Drug Administration] (FDA) approval. The drug obtained FDA clearance based on data from five clinical trials, lasting two years, involving 1,827 postmenopausal women with osteoporosis in 16 different countries. The trials showed a significant increase in bone mineral density at the spine, hip, and other sites. Overall, the drug reduced the number of women with new spinal fractures by 48%, the total number of new spinal fractures by 63%, and reduced overall height loss by 35%. Today, the drug remains in circulation in caplet and liquid forms and attainable at most pharmaceutical distribution centers with an eligible prescription. &lt;br /&gt;
&lt;br /&gt;
== Side Effects &amp;lt;ref&amp;gt;Common Side Effects of Fosamax (Alendronate Sodium) Drug Center - RxList. (2015, August 26). RxList. Retrieved November 14, 2016, from  http://www.rxlist.com/fosamax-side-effects-drug-center.htm&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
Common side effects of Fosamax include gas, constipation, heartburn, diarrhea, bloating, nausea, vomiting, stomach pain, joint pain or swelling, swelling in your hands or feet, dizziness, headache, eye pain, back pain, or weakness.&lt;br /&gt;
Serious side effects of Fosamax include severe pain (joints, bone, muscle, jaw, back or heartburn), chest pain, difficulty swallowing, bloody stools, eye pain, skin blisters, and swelling of the face, tongue, or throat. &lt;br /&gt;
&lt;br /&gt;
== Structural Highlights &amp;lt;ref&amp;gt;Protein Data Bank in Europe: Bringing Structure to Biology, from http://www.ebi.ac.uk/pdbe/entry/pdb/2F89&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
As a bisphosphonate, Fosamax is a synthetic analog of [https://en.wikipedia.org/wiki/Pyrophosphate pyrophosphate], containing two phosphate groups on the central carbon. In its drug form, Fosamax includes a sodium bounded in place of a carboxyl hydrogen. In solution, oxyanions may form an ionic bond(s) with metal cations, such as magnesium. The central carbon is also attached to a hydroxyl group (-OH) and a three-carbon chain [-(CH2)3] leading to an amino group (-NH2) (Fig. 2).&lt;br /&gt;
&amp;lt;StructureSection load=&#039;2f89&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;Crystal Structure of human FPPS in complex with a bisphosphonate.&#039; scene=&#039;&#039;&amp;gt; [[Image:Screen Shot 2016-12-04 at 3.21.51 PM.png|thumb|left|200px|Figure 2. Chemical structure of Fosamax (alendronate sodium).]] &lt;br /&gt;
[[Image:Screen Shot 2016-12-02 at 3.24.13 PM.png|thumb|left|400px|Figure 3. DMAPP/GPP substrate/product site of SPSS-alendronate complex indicated by yellow eclipse.]]&lt;br /&gt;
[[Image:Screen Shot 2016-12-02 at 3.33.04 PM.png|thumb|left|400px|Figure 4. Aspartate-Magnesium cation-phosphonate chelate within FPPS-alendronate complex. Pink sphere indicates Mg2+ ion; red indicates oxygen atom, yellow indicates phosphorous atom, blue (bond-line) indicates nitrogen, blue (ribbon) indicates alpha helix motif.]] [[Image:Screen Shot 2016-12-04 at 8.42.20 PM.png|thumb|left|500px|Figure 5. Comparison between the structure of the carbocation transition states of DMAPP and GPP to the nitrogen-containing bisphosphonate alendronate. Close similarity suggests that Fosamax acts as carbocation transition state analog of isoprenoid diphosphates &amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;.]]&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Mechanism of Action ==&lt;br /&gt;
Functioning as a nitrogen-containing, second generation bisphosphonate, Fosamax binds to hydroxyapatite in bone and promotes apoptosis in osteoclasts (cells specialized in skeletal breakdown) (Fig. 6), thus slowing the breakdown of osseous tissue&amp;lt;ref&amp;gt;Drake, Matthew T., Bart L. Clarke, and Sundeep Khosla. &amp;quot;Bisphosphonates: Mechanism of Action and Role in Clinical Practice.&amp;quot; Mayo Clinic Proceedings 83, no. 9 (2008): 1032-045. doi:10.4065/83.9.1032.&amp;lt;/ref&amp;gt;. In order to accomplish this, Fosamax inhibits [http://www.uniprot.org/uniprot/P14324 farnesyl pyrophosphate synthase] (FPPS), an enzyme which plays a role within the [https://en.wikipedia.org/wiki/Mevalonate_pathway mevalonic acid pathway], thereby reducing the production rate of isoprenoid compounds that are essential for post-translational modification of small guanosine triphosphate (GTP)-binding proteins (e.g. Rho, Rab and [https://pdb101.rcsb.org/motm/148 Ras])&amp;lt;ref&amp;gt;Luckman SP, Hughes DE, Coxon FP, Russell RGG, Rogers MJ (2005). Nitrogen-Containing Biphosphonates Inhibit the Mevalonate Pathway and Prevent Post-Translational Prenylation of GTP-Binding Proteins, Including Ras. Journal of Bone and Mineral Research. 20, 1265–74&amp;lt;/ref&amp;gt;. By inhibiting FPPS, Fosamax discourages the successive condensation of isopentenyl pyrophosphate with dimethylallyl pyrophosphate to geranyl pyrophosphate, which interferes with osteoclast function and survival &amp;lt;ref&amp;gt;Alendronic acid. (2005, June 13), from http://www.drugbank.ca/drugs/DB00630#bond-15126&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;Fisher, J. E., Rogers, M. J., Halasy, J. M., Luckman, S. P., Hughes, D. E., Masarachia, P. J., … Reszka, A. A. (1999). Alendronate mechanism of action: geranylgeraniol, an intermediate in the mevalonate pathway, prevents inhibition of osteoclast formation, bone resorption, and kinase activation in vitro. Proceedings of the National Academy of Sciences, 96(1), 133–138. doi:10.1073/pnas.96.1.133, from http://www.pnas.org/content/96/1/133.full.pdf&amp;lt;/ref&amp;gt;. [[Image:Screen Shot 2016-12-04 at 8.23.53 PM.png|thumb|right|400px|Figure 6. Relationship between bisphosphonates and osteoclasts at individual stages of cellular life.&amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;]]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Though the exact chemical mechanism by which alendronate inhibits FPPS remains unclear, nitrogen-containing bisphosphates (&amp;lt;scene name=&#039;74/745950/Ligand/3&#039;&amp;gt;N-BP&amp;lt;/scene&amp;gt;s) bind to the dimethylallyl/geranyl pyrophosphate (DMAPP/GPP) ligand pocket (Fig. 3) and alter the secondary structure of the enzyme&amp;lt;ref&amp;gt;Kavanagh KL, Guo K, Dunford JE, Wu X, Knapp S, and Ebetino FH (2006). The molecular mechanism of nitrogen-containing bisphosphonates as antiosteoporosis drugs. Proceedings of the National Academy of Sciences. 103, 7829–34&amp;lt;/ref&amp;gt;. Specifically, alendronate may bind to the FPPS allylic substrate-binding pocket by ligating the Magnesium ion center via phosphonate oxyanion nucleophilic attack&amp;lt;ref&amp;gt;Hosfield DJ, Zhang Y, Dougan DR, Broun A, Tari LW, Swanson RV (2003). Structural Basis for Bisphosphonate-mediated Inhibition of Isoprenoid Biosynthesis. Journal of Biological Chemistry. 2279, 8526–9&amp;lt;/ref&amp;gt;. Phosphonate groups are stabilized by a cluster of three Mg2+ ions via oxyanion-metal cation charge interactions, as well as three FPPS-conserved aspartate residues located within two alpha helical motifs (&amp;lt;scene name=&#039;74/745950/Aspartates/2&#039;&amp;gt;Asp-103, 107, and 243&amp;lt;/scene&amp;gt;) that form a &amp;lt;scene name=&#039;74/745950/Correct_ligand_binding_site/8&#039;&amp;gt;magnesium-bisphosphonate chelate&amp;lt;/scene&amp;gt; (Fig. 4)&amp;lt;ref&amp;gt;Tarshis L. C., Yan M., Poulter C. D., Sacchettini J. C. (1994) Biochemistry. 33, 10871–10877.&amp;lt;/ref&amp;gt;. N-BPs may bind to the GPP substrate-binding site because N-BPs resemble the structure of the enzyme’s natural substrates (GPP and DMAPP) and act as carbocation transition state analogs (Fig. 5). Interactions between N-BP and amino acid residues (&amp;lt;scene name=&#039;74/745950/Lys200_thr201/3&#039;&amp;gt;Thr-201 and Lys-200&amp;lt;/scene&amp;gt;) suggest that these inhibitors &amp;lt;scene name=&#039;74/745950/Ligand/3&#039;&amp;gt;position their nitrogen group in the carbocation-binding site&amp;lt;/scene&amp;gt;, then mimic the carbocation intermediate formed via substrate ionization &amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;. By acting as a transition state analog for isoprenoid biosynthesis, Fosamax effectively increases the activation energy of a regulatory/rate-determining step in the mevalonate pathway, subsequently reducing the concentration of product molecules that aid the continuous biodegradation of skeletal tissue.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== References ==&lt;br /&gt;
&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Contributors and Editors ==&lt;br /&gt;
&lt;br /&gt;
[[User:Alyssa Jewel D. Floro|Floro, Alyssa Jewel D.]] [[User:Justin Myles Kidd|Kidd, Justin M.]] [[User:Osna M. Samady|Samady, Osna M.]]&lt;/div&gt;</summary>
		<author><name>Justin Myles Kidd</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Fosamax_(alendronate_sodium)&amp;diff=2688795</id>
		<title>Fosamax (alendronate sodium)</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Fosamax_(alendronate_sodium)&amp;diff=2688795"/>
		<updated>2016-12-06T17:14:18Z</updated>

		<summary type="html">&lt;p&gt;Justin Myles Kidd: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;scene name=&#039;74/745950/Correct_ligand_binding_site/8&#039;&amp;gt;&amp;lt;/scene&amp;gt;&amp;lt;scene name=&#039;74/745950/Correct_ligand_binding_site/3&#039;&amp;gt;&amp;lt;/scene&amp;gt;&amp;lt;table style=&amp;quot;width:200px; border:1px solid black; float:right; &amp;quot;&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td colspan=&amp;quot;2&amp;quot;&amp;gt;&amp;lt;center&amp;gt; FOSAMAX &amp;lt;/center&amp;gt;&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td colspan=&amp;quot;2&amp;quot;&amp;gt;&amp;lt;center&amp;gt;[[Image:Fosamax.gif|thumb|center|200px|Figure 1. Fosamax prescription drug, tablet form.]]&amp;lt;/center&amp;gt;&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Formula:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;C4H13NO7P2&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Molar Mass:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;249.097 g/mol&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;INN:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Alendronic Acid&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;USAN:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Alendronate sodium&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;IUPAC:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;4-amino-1-hydroxybutylidene) bisphosphonic acid monosodium salt trihydrate&lt;br /&gt;
&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;/table&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Fosamax (Alendronate Sodium or Alendronic Acid) is a pharmaceutical drug administered as an antiresorptive therapy agent for osteodegenerative diseases such as [https://en.wikipedia.org/wiki/Osteoporosis Osteoporosis], [https://en.wikipedia.org/wiki/Paget&#039;s_disease_of_bone Paget&#039;s disease], and [https://en.wikipedia.org/wiki/Osteogenesis_imperfecta osteogenesis imperfecta]&amp;lt;ref&amp;gt;Gong Li, Altman Russ B, Klein Teri E . &amp;quot;Bisphosphonates pathway&amp;quot; Pharmacogenetics and genomics (2011). from https://www.pharmgkb.org/pathway/PA154423660&amp;lt;/ref&amp;gt;.&lt;br /&gt;
Functioning as a nitrogen-containing, second generation [https://en.wikipedia.org/wiki/Bisphosphonate bisphosphonate], Fosamax binds to [https://en.wikipedia.org/wiki/Hydroxylapatite hydroxyapatite] in bone and promotes [https://en.wikipedia.org/wiki/Apoptosis apoptosis] in [https://en.wikipedia.org/wiki/Osteoclast osteoclasts] (cells specialized in skeletal breakdown), thereby delaying the degradation of osseous tissue. While incorporated in the bone matrix, alendronate is not pharmacologically active; therefore, it must be continuously administered to suppress osteoclasts on newly formed resorption surfaces &amp;lt;ref&amp;gt;Fosamax: Uses, Dosage &amp;amp; Side Effects - Drugs.com. (2016, November 3).Fosamax: Uses, Dosage &amp;amp; Side Effects - Drugs.com. Retrieved November 14, 2016, from https://www.drugs.com/fosamax.html&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
== History &amp;lt;ref&amp;gt;Fosamax (alendronate sodium). Fosamax New FDA Drug Approval | CenterWatch. Merck. Retrieved November 15, 2016, from http://www.centerwatch.com/drug-information/fda-approved-drugs/drug/26/fosamax-alendronate-sodium&amp;lt;/ref&amp;gt;==&lt;br /&gt;
Fosamax has been in use since September 29, 1995 after gaining [http://google2.fda.gov/search?q=fosamax&amp;amp;client=FDAgov&amp;amp;site=FDAgov&amp;amp;lr=&amp;amp;proxystylesheet=FDAgov&amp;amp;requiredfields=-archive%3AYes&amp;amp;output=xml_no_dtd&amp;amp;getfields=* Food and Drug Administration] (FDA) approval. The drug obtained FDA clearance based on data from five clinical trials, lasting two years, involving 1,827 postmenopausal women with osteoporosis in 16 different countries. The trials showed a significant increase in bone mineral density at the spine, hip, and other sites. Overall, the drug reduced the number of women with new spinal fractures by 48%, the total number of new spinal fractures by 63%, and reduced overall height loss by 35%. Today, the drug remains in circulation in caplet and liquid forms and attainable at most pharmaceutical distribution centers with an eligible prescription. &lt;br /&gt;
&lt;br /&gt;
== Side Effects &amp;lt;ref&amp;gt;Common Side Effects of Fosamax (Alendronate Sodium) Drug Center - RxList. (2015, August 26). RxList. Retrieved November 14, 2016, from  http://www.rxlist.com/fosamax-side-effects-drug-center.htm&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
Common side effects of Fosamax include gas, constipation, heartburn, diarrhea, bloating, nausea, vomiting, stomach pain, joint pain or swelling, swelling in your hands or feet, dizziness, headache, eye pain, back pain, or weakness.&lt;br /&gt;
Serious side effects of Fosamax include severe pain (joints, bone, muscle, jaw, back or heartburn), chest pain, difficulty swallowing, bloody stools, eye pain, skin blisters, and swelling of the face, tongue, or throat. &lt;br /&gt;
&lt;br /&gt;
== Structural Highlights &amp;lt;ref&amp;gt;Protein Data Bank in Europe: Bringing Structure to Biology, from http://www.ebi.ac.uk/pdbe/entry/pdb/2F89&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
As a bisphosphonate, Fosamax is a synthetic analog of [https://en.wikipedia.org/wiki/Pyrophosphate pyrophosphate], containing two phosphate groups on the central carbon. In its drug form, Fosamax includes a sodium bounded in place of a carboxyl hydrogen. In solution, oxyanions may form an ionic bond(s) with metal cations, such as magnesium. The central carbon is also attached to a hydroxyl group (-OH) and a three-carbon chain [-(CH2)3] leading to an amino group (-NH2) (Fig. 2).&lt;br /&gt;
&amp;lt;StructureSection load=&#039;2f89&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;Crystal Structure of human FPPS in complex with a bisphosphonate.&#039; scene=&#039;&#039;&amp;gt; [[Image:Screen Shot 2016-12-04 at 3.21.51 PM.png|thumb|left|200px|Figure 2. Chemical structure of Fosamax (alendronate sodium).]] &lt;br /&gt;
[[Image:Screen Shot 2016-12-02 at 3.24.13 PM.png|thumb|left|400px|Figure 3. DMAPP/GPP substrate/product site of SPSS-alendronate complex indicated by yellow eclipse.]]&lt;br /&gt;
[[Image:Screen Shot 2016-12-02 at 3.33.04 PM.png|thumb|left|400px|Figure 4. Aspartate-Magnesium cation-phosphonate chelate within FPPS-alendronate complex. Pink sphere indicates Mg2+ ion; red indicates oxygen atom, yellow indicates phosphorous atom, blue (bond-line) indicates nitrogen, blue (ribbon) indicates alpha helix motif.]] [[Image:Screen Shot 2016-12-04 at 8.42.20 PM.png|thumb|left|500px|Figure 5. Comparison between the structure of the carbocation transition states of DMAPP and GPP to the nitrogen-containing bisphosphonate alendronate. Close similarity suggests that Fosamax acts as carbocation transition state analog of isoprenoid diphosphates &amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;.]]&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Mechanism of Action ==&lt;br /&gt;
Functioning as a nitrogen-containing, second generation bisphosphonate, Fosamax binds to hydroxyapatite in bone and promotes apoptosis in osteoclasts (cells specialized in skeletal breakdown) (Fig. 6), thus slowing the breakdown of osseous tissue&amp;lt;ref&amp;gt;Drake, Matthew T., Bart L. Clarke, and Sundeep Khosla. &amp;quot;Bisphosphonates: Mechanism of Action and Role in Clinical Practice.&amp;quot; Mayo Clinic Proceedings 83, no. 9 (2008): 1032-045. doi:10.4065/83.9.1032.&amp;lt;/ref&amp;gt;. In order to accomplish this, Fosamax inhibits [http://www.uniprot.org/uniprot/P14324 farnesyl pyrophosphate synthase] (FPPS), an enzyme which plays a role within the [https://en.wikipedia.org/wiki/Mevalonate_pathway mevalonic acid pathway], thereby reducing the production rate of isoprenoid compounds that are essential for post-translational modification of small guanosine triphosphate (GTP)-binding proteins (e.g. Rho, Rab and [https://pdb101.rcsb.org/motm/148 Ras])&amp;lt;ref&amp;gt;Luckman SP, Hughes DE, Coxon FP, Russell RGG, Rogers MJ (2005). Nitrogen-Containing Biphosphonates Inhibit the Mevalonate Pathway and Prevent Post-Translational Prenylation of GTP-Binding Proteins, Including Ras. Journal of Bone and Mineral Research. 20, 1265–74&amp;lt;/ref&amp;gt;. By inhibiting FPPS, Fosamax discourages the successive condensation of isopentenyl pyrophosphate with dimethylallyl pyrophosphate to geranyl pyrophosphate, which interferes with osteoclast function and survival &amp;lt;ref&amp;gt;Alendronic acid. (2005, June 13), from http://www.drugbank.ca/drugs/DB00630#bond-15126&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;Fisher, J. E., Rogers, M. J., Halasy, J. M., Luckman, S. P., Hughes, D. E., Masarachia, P. J., … Reszka, A. A. (1999). Alendronate mechanism of action: geranylgeraniol, an intermediate in the mevalonate pathway, prevents inhibition of osteoclast formation, bone resorption, and kinase activation in vitro. Proceedings of the National Academy of Sciences, 96(1), 133–138. doi:10.1073/pnas.96.1.133, from http://www.pnas.org/content/96/1/133.full.pdf&amp;lt;/ref&amp;gt;. [[Image:Screen Shot 2016-12-04 at 8.23.53 PM.png|thumb|right|400px|Figure 6. Relationship between bisphosphonates and osteoclasts at individual stages of cellular life.&amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;]]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Though the exact chemical mechanism by which alendronate inhibits FPPS remains unclear, nitrogen-containing bisphosphates (&amp;lt;scene name=&#039;74/745950/Ligand/3&#039;&amp;gt;N-BP&amp;lt;/scene&amp;gt;&amp;lt;scene name=&#039;74/745950/Aspartates/2&#039;&amp;gt;&amp;lt;scene name=&#039;74/745950/Aspartates/2&#039;&amp;gt;Text To Be Displayed&amp;lt;/scene&amp;gt;&amp;lt;/scene&amp;gt;s) bind to the dimethylallyl/geranyl pyrophosphate (DMAPP/GPP) ligand pocket (Fig. 3) and alter the secondary structure of the enzyme&amp;lt;ref&amp;gt;Kavanagh KL, Guo K, Dunford JE, Wu X, Knapp S, and Ebetino FH (2006). The molecular mechanism of nitrogen-containing bisphosphonates as antiosteoporosis drugs. Proceedings of the National Academy of Sciences. 103, 7829–34&amp;lt;/ref&amp;gt;. Specifically, alendronate may bind to the FPPS allylic substrate-binding pocket by ligating the Magnesium ion center via phosphonate oxyanion nucleophilic attack&amp;lt;ref&amp;gt;Hosfield DJ, Zhang Y, Dougan DR, Broun A, Tari LW, Swanson RV (2003). Structural Basis for Bisphosphonate-mediated Inhibition of Isoprenoid Biosynthesis. Journal of Biological Chemistry. 2279, 8526–9&amp;lt;/ref&amp;gt;. Phosphonate groups are stabilized by a cluster of three Mg2+ ions via oxyanion-metal cation charge interactions, as well as three FPPS-conserved aspartate residues located within two alpha helical motifs (&amp;lt;scene name=&#039;74/745950/Aspartates/4&#039;&amp;gt;Asp-103, 107, and 243&amp;lt;/scene&amp;gt;) that form a &amp;lt;scene name=&#039;74/745950/Correct_ligand_binding_site/8&#039;&amp;gt;magnesium-bisphosphonate chelate&amp;lt;/scene&amp;gt; (Fig. 4)&amp;lt;ref&amp;gt;Tarshis L. C., Yan M., Poulter C. D., Sacchettini J. C. (1994) Biochemistry. 33, 10871–10877.&amp;lt;/ref&amp;gt;. N-BPs may bind to the GPP substrate-binding site because N-BPs resemble the structure of the enzyme’s natural substrates (GPP and DMAPP) and act as carbocation transition state analogs (Fig. 5). Interactions between N-BP and amino acid residues (&amp;lt;scene name=&#039;74/745950/Lys200_thr201/3&#039;&amp;gt;Thr-201 and Lys-200&amp;lt;/scene&amp;gt;) suggest that these inhibitors position nitrogen in the carbocation-binding site, then mimic the carbocation intermediate formed via substrate ionization &amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;. By acting as a transition state analog for isoprenoid biosynthesis, Fosamax effectively increases the activation energy of a regulatory/rate-determining step in the mevalonate pathway, subsequently reducing the concentration of product molecules that aid the continuous biodegradation of skeletal tissue.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== References ==&lt;br /&gt;
&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Contributors and Editors ==&lt;br /&gt;
&lt;br /&gt;
[[User:Alyssa Jewel D. Floro|Floro, Alyssa Jewel D.]] [[User:Justin Myles Kidd|Kidd, Justin M.]] [[User:Osna M. Samady|Samady, Osna M.]]&lt;/div&gt;</summary>
		<author><name>Justin Myles Kidd</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Fosamax_(alendronate_sodium)&amp;diff=2688794</id>
		<title>Fosamax (alendronate sodium)</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Fosamax_(alendronate_sodium)&amp;diff=2688794"/>
		<updated>2016-12-06T16:53:42Z</updated>

		<summary type="html">&lt;p&gt;Justin Myles Kidd: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;scene name=&#039;74/745950/Correct_ligand_binding_site/8&#039;&amp;gt;&amp;lt;/scene&amp;gt;&amp;lt;scene name=&#039;74/745950/Correct_ligand_binding_site/3&#039;&amp;gt;&amp;lt;/scene&amp;gt;&amp;lt;table style=&amp;quot;width:200px; border:1px solid black; float:right; &amp;quot;&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td colspan=&amp;quot;2&amp;quot;&amp;gt;&amp;lt;center&amp;gt; FOSAMAX &amp;lt;/center&amp;gt;&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td colspan=&amp;quot;2&amp;quot;&amp;gt;&amp;lt;center&amp;gt;[[Image:Fosamax.gif|thumb|center|200px|Figure 1. Fosamax prescription drug, tablet form.]]&amp;lt;/center&amp;gt;&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Formula:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;C4H13NO7P2&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Molar Mass:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;249.097 g/mol&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;INN:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Alendronic Acid&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;USAN:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Alendronate sodium&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;IUPAC:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;4-amino-1-hydroxybutylidene) bisphosphonic acid monosodium salt trihydrate&lt;br /&gt;
&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;/table&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Fosamax (Alendronate Sodium or Alendronic Acid) is a pharmaceutical drug administered as an antiresorptive therapy agent for osteodegenerative diseases such as [https://en.wikipedia.org/wiki/Osteoporosis Osteoporosis], [https://en.wikipedia.org/wiki/Paget&#039;s_disease_of_bone Paget&#039;s disease], and [https://en.wikipedia.org/wiki/Osteogenesis_imperfecta osteogenesis imperfecta]&amp;lt;ref&amp;gt;Gong Li, Altman Russ B, Klein Teri E . &amp;quot;Bisphosphonates pathway&amp;quot; Pharmacogenetics and genomics (2011). from https://www.pharmgkb.org/pathway/PA154423660&amp;lt;/ref&amp;gt;.&lt;br /&gt;
Functioning as a nitrogen-containing, second generation [https://en.wikipedia.org/wiki/Bisphosphonate bisphosphonate], Fosamax binds to [https://en.wikipedia.org/wiki/Hydroxylapatite hydroxyapatite] in bone and promotes [https://en.wikipedia.org/wiki/Apoptosis apoptosis] in [https://en.wikipedia.org/wiki/Osteoclast osteoclasts] (cells specialized in skeletal breakdown), thereby delaying the degradation of osseous tissue. While incorporated in the bone matrix, alendronate is not pharmacologically active; therefore, it must be continuously administered to suppress osteoclasts on newly formed resorption surfaces &amp;lt;ref&amp;gt;Fosamax: Uses, Dosage &amp;amp; Side Effects - Drugs.com. (2016, November 3).Fosamax: Uses, Dosage &amp;amp; Side Effects - Drugs.com. Retrieved November 14, 2016, from https://www.drugs.com/fosamax.html&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
== History &amp;lt;ref&amp;gt;Fosamax (alendronate sodium). Fosamax New FDA Drug Approval | CenterWatch. Merck. Retrieved November 15, 2016, from http://www.centerwatch.com/drug-information/fda-approved-drugs/drug/26/fosamax-alendronate-sodium&amp;lt;/ref&amp;gt;==&lt;br /&gt;
Fosamax has been in use since September 29, 1995 after gaining [http://google2.fda.gov/search?q=fosamax&amp;amp;client=FDAgov&amp;amp;site=FDAgov&amp;amp;lr=&amp;amp;proxystylesheet=FDAgov&amp;amp;requiredfields=-archive%3AYes&amp;amp;output=xml_no_dtd&amp;amp;getfields=* Food and Drug Administration] (FDA) approval. The drug obtained FDA clearance based on data from five clinical trials, lasting two years, involving 1,827 postmenopausal women with osteoporosis in 16 different countries. The trials showed a significant increase in bone mineral density at the spine, hip, and other sites. Overall, the drug reduced the number of women with new spinal fractures by 48%, the total number of new spinal fractures by 63%, and reduced overall height loss by 35%. Today, the drug remains in circulation in caplet and liquid forms and attainable at most pharmaceutical distribution centers with an eligible prescription. &lt;br /&gt;
&lt;br /&gt;
== Side Effects &amp;lt;ref&amp;gt;Common Side Effects of Fosamax (Alendronate Sodium) Drug Center - RxList. (2015, August 26). RxList. Retrieved November 14, 2016, from  http://www.rxlist.com/fosamax-side-effects-drug-center.htm&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
Common side effects of Fosamax include gas, constipation, heartburn, diarrhea, bloating, nausea, vomiting, stomach pain, joint pain or swelling, swelling in your hands or feet, dizziness, headache, eye pain, back pain, or weakness.&lt;br /&gt;
Serious side effects of Fosamax include severe pain (joints, bone, muscle, jaw, back or heartburn), chest pain, difficulty swallowing, bloody stools, eye pain, skin blisters, and swelling of the face, tongue, or throat. &lt;br /&gt;
&lt;br /&gt;
== Structural Highlights &amp;lt;ref&amp;gt;Protein Data Bank in Europe: Bringing Structure to Biology, from http://www.ebi.ac.uk/pdbe/entry/pdb/2F89&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
As a bisphosphonate, Fosamax is a synthetic analog of [https://en.wikipedia.org/wiki/Pyrophosphate pyrophosphate], containing two phosphate groups on the central carbon. In its drug form, Fosamax includes a sodium bounded in place of a carboxyl hydrogen. In solution, oxyanions may form an ionic bond(s) with metal cations, such as magnesium. The central carbon is also attached to a hydroxyl group (-OH) and a three-carbon chain [-(CH2)3] leading to an amino group (-NH2) (Fig. 2).&lt;br /&gt;
&amp;lt;StructureSection load=&#039;2f89&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;Crystal Structure of human FPPS in complex with a bisphosphonate.&#039; scene=&#039;&#039;&amp;gt; [[Image:Screen Shot 2016-12-04 at 3.21.51 PM.png|thumb|left|200px|Figure 2. Chemical structure of Fosamax (alendronate sodium).]] &lt;br /&gt;
[[Image:Screen Shot 2016-12-02 at 3.24.13 PM.png|thumb|left|400px|Figure 3. DMAPP/GPP substrate/product site of SPSS-alendronate complex indicated by yellow eclipse.]]&lt;br /&gt;
[[Image:Screen Shot 2016-12-02 at 3.33.04 PM.png|thumb|left|400px|Figure 4. Aspartate-Magnesium cation-phosphonate chelate within FPPS-alendronate complex. Pink sphere indicates Mg2+ ion; red indicates oxygen atom, yellow indicates phosphorous atom, blue (bond-line) indicates nitrogen, blue (ribbon) indicates alpha helix motif.]] [[Image:Screen Shot 2016-12-04 at 8.42.20 PM.png|thumb|left|500px|Figure 5. Comparison between the structure of the carbocation transition states of DMAPP and GPP to the nitrogen-containing bisphosphonate alendronate. Close similarity suggests that Fosamax acts as carbocation transition state analog of isoprenoid diphosphates &amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;.]]&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Mechanism of Action ==&lt;br /&gt;
Functioning as a nitrogen-containing, second generation bisphosphonate, Fosamax binds to hydroxyapatite in bone and promotes apoptosis in osteoclasts (cells specialized in skeletal breakdown) (Fig. 6), thus slowing the breakdown of osseous tissue&amp;lt;ref&amp;gt;Drake, Matthew T., Bart L. Clarke, and Sundeep Khosla. &amp;quot;Bisphosphonates: Mechanism of Action and Role in Clinical Practice.&amp;quot; Mayo Clinic Proceedings 83, no. 9 (2008): 1032-045. doi:10.4065/83.9.1032.&amp;lt;/ref&amp;gt;. In order to accomplish this, Fosamax inhibits [http://www.uniprot.org/uniprot/P14324 farnesyl pyrophosphate synthase] (FPPS), an enzyme which plays a role within the [https://en.wikipedia.org/wiki/Mevalonate_pathway mevalonic acid pathway], thereby reducing the production rate of isoprenoid compounds that are essential for post-translational modification of small guanosine triphosphate (GTP)-binding proteins (e.g. Rho, Rab and [https://pdb101.rcsb.org/motm/148 Ras])&amp;lt;ref&amp;gt;Luckman SP, Hughes DE, Coxon FP, Russell RGG, Rogers MJ (2005). Nitrogen-Containing Biphosphonates Inhibit the Mevalonate Pathway and Prevent Post-Translational Prenylation of GTP-Binding Proteins, Including Ras. Journal of Bone and Mineral Research. 20, 1265–74&amp;lt;/ref&amp;gt;. By inhibiting FPPS, Fosamax discourages the successive condensation of isopentenyl pyrophosphate with dimethylallyl pyrophosphate to geranyl pyrophosphate, which interferes with osteoclast function and survival &amp;lt;ref&amp;gt;Alendronic acid. (2005, June 13), from http://www.drugbank.ca/drugs/DB00630#bond-15126&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;Fisher, J. E., Rogers, M. J., Halasy, J. M., Luckman, S. P., Hughes, D. E., Masarachia, P. J., … Reszka, A. A. (1999). Alendronate mechanism of action: geranylgeraniol, an intermediate in the mevalonate pathway, prevents inhibition of osteoclast formation, bone resorption, and kinase activation in vitro. Proceedings of the National Academy of Sciences, 96(1), 133–138. doi:10.1073/pnas.96.1.133, from http://www.pnas.org/content/96/1/133.full.pdf&amp;lt;/ref&amp;gt;. [[Image:Screen Shot 2016-12-04 at 8.23.53 PM.png|thumb|right|400px|Figure 6. Relationship between bisphosphonates and osteoclasts at individual stages of cellular life.&amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;]]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Though the exact chemical mechanism by which alendronate inhibits FPPS remains unclear, nitrogen-containing bisphosphates (&amp;lt;scene name=&#039;74/745950/Ligand/2&#039;&amp;gt;N-BP&amp;lt;/scene&amp;gt;s) bind to the dimethylallyl/geranyl pyrophosphate (DMAPP/GPP) ligand pocket (Fig. 3) and alter the secondary structure of the enzyme&amp;lt;ref&amp;gt;Kavanagh KL, Guo K, Dunford JE, Wu X, Knapp S, and Ebetino FH (2006). The molecular mechanism of nitrogen-containing bisphosphonates as antiosteoporosis drugs. Proceedings of the National Academy of Sciences. 103, 7829–34&amp;lt;/ref&amp;gt;. Specifically, alendronate may bind to the FPPS allylic substrate-binding pocket by ligating the Magnesium ion center via phosphonate oxyanion nucleophilic attack&amp;lt;ref&amp;gt;Hosfield DJ, Zhang Y, Dougan DR, Broun A, Tari LW, Swanson RV (2003). Structural Basis for Bisphosphonate-mediated Inhibition of Isoprenoid Biosynthesis. Journal of Biological Chemistry. 2279, 8526–9&amp;lt;/ref&amp;gt;. Phosphonate groups are stabilized by a cluster of three Mg2+ ions via oxyanion-metal cation charge interactions, as well as three FPPS-conserved aspartate residues located within two alpha helical motifs (&amp;lt;scene name=&#039;74/745950/Aspartates/2&#039;&amp;gt;Asp-103, 107, and 243&amp;lt;/scene&amp;gt;) that form a &amp;lt;scene name=&#039;74/745950/Correct_ligand_binding_site/8&#039;&amp;gt;magnesium-bisphosphonate chelate&amp;lt;/scene&amp;gt; (Fig. 4)&amp;lt;ref&amp;gt;Tarshis L. C., Yan M., Poulter C. D., Sacchettini J. C. (1994) Biochemistry. 33, 10871–10877.&amp;lt;/ref&amp;gt;. N-BPs may bind to the GPP substrate-binding site because N-BPs resemble the structure of the enzyme’s natural substrates (GPP and DMAPP) and act as carbocation transition state analogs (Fig. 5). Interactions between N-BP and amino acid residues (&amp;lt;scene name=&#039;74/745950/Lys200_thr201/3&#039;&amp;gt;Thr-201 and Lys-200&amp;lt;/scene&amp;gt;) suggest that these inhibitors position nitrogen in the carbocation-binding site, then mimic the carbocation intermediate formed via substrate ionization &amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;. By acting as a transition state analog for isoprenoid biosynthesis, Fosamax effectively increases the activation energy of a regulatory/rate-determining step in the mevalonate pathway, subsequently reducing the concentration of product molecules that aid the continuous biodegradation of skeletal tissue.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== References ==&lt;br /&gt;
&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Contributors and Editors ==&lt;br /&gt;
&lt;br /&gt;
[[User:Alyssa Jewel D. Floro|Floro, Alyssa Jewel D.]] [[User:Justin Myles Kidd|Kidd, Justin M.]] [[User:Osna M. Samady|Samady, Osna M.]]&lt;/div&gt;</summary>
		<author><name>Justin Myles Kidd</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Fosamax_(alendronate_sodium)&amp;diff=2688793</id>
		<title>Fosamax (alendronate sodium)</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Fosamax_(alendronate_sodium)&amp;diff=2688793"/>
		<updated>2016-12-06T16:17:23Z</updated>

		<summary type="html">&lt;p&gt;Justin Myles Kidd: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;scene name=&#039;74/745950/Correct_ligand_binding_site/8&#039;&amp;gt;Text To Be Displayed&amp;lt;/scene&amp;gt;&amp;lt;scene name=&#039;74/745950/Correct_ligand_binding_site/3&#039;&amp;gt;&amp;lt;/scene&amp;gt;&amp;lt;table style=&amp;quot;width:200px; border:1px solid black; float:right; &amp;quot;&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td colspan=&amp;quot;2&amp;quot;&amp;gt;&amp;lt;center&amp;gt; FOSAMAX &amp;lt;/center&amp;gt;&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td colspan=&amp;quot;2&amp;quot;&amp;gt;&amp;lt;center&amp;gt;[[Image:Fosamax.gif|thumb|center|200px|Figure 1. Fosamax prescription drug, tablet form.]]&amp;lt;/center&amp;gt;&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Formula:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;C4H13NO7P2&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Molar Mass:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;249.097 g/mol&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;INN:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Alendronic Acid&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;USAN:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Alendronate sodium&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;IUPAC:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;4-amino-1-hydroxybutylidene) bisphosphonic acid monosodium salt trihydrate&lt;br /&gt;
&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;/table&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Fosamax (Alendronate Sodium or Alendronic Acid) is a pharmaceutical drug administered as an antiresorptive therapy agent for osteodegenerative diseases such as [https://en.wikipedia.org/wiki/Osteoporosis Osteoporosis], [https://en.wikipedia.org/wiki/Paget&#039;s_disease_of_bone Paget&#039;s disease], and [https://en.wikipedia.org/wiki/Osteogenesis_imperfecta osteogenesis imperfecta]&amp;lt;ref&amp;gt;Gong Li, Altman Russ B, Klein Teri E . &amp;quot;Bisphosphonates pathway&amp;quot; Pharmacogenetics and genomics (2011). from https://www.pharmgkb.org/pathway/PA154423660&amp;lt;/ref&amp;gt;.&lt;br /&gt;
Functioning as a nitrogen-containing, second generation [https://en.wikipedia.org/wiki/Bisphosphonate bisphosphonate], Fosamax binds to [https://en.wikipedia.org/wiki/Hydroxylapatite hydroxyapatite] in bone and promotes [https://en.wikipedia.org/wiki/Apoptosis apoptosis] in [https://en.wikipedia.org/wiki/Osteoclast osteoclasts] (cells specialized in skeletal breakdown), thereby delaying the degradation of osseous tissue. While incorporated in the bone matrix, alendronate is not pharmacologically active; therefore, it must be continuously administered to suppress osteoclasts on newly formed resorption surfaces &amp;lt;ref&amp;gt;Fosamax: Uses, Dosage &amp;amp; Side Effects - Drugs.com. (2016, November 3).Fosamax: Uses, Dosage &amp;amp; Side Effects - Drugs.com. Retrieved November 14, 2016, from https://www.drugs.com/fosamax.html&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
== History &amp;lt;ref&amp;gt;Fosamax (alendronate sodium). Fosamax New FDA Drug Approval | CenterWatch. Merck. Retrieved November 15, 2016, from http://www.centerwatch.com/drug-information/fda-approved-drugs/drug/26/fosamax-alendronate-sodium&amp;lt;/ref&amp;gt;==&lt;br /&gt;
Fosamax has been in use since September 29, 1995 after gaining [http://google2.fda.gov/search?q=fosamax&amp;amp;client=FDAgov&amp;amp;site=FDAgov&amp;amp;lr=&amp;amp;proxystylesheet=FDAgov&amp;amp;requiredfields=-archive%3AYes&amp;amp;output=xml_no_dtd&amp;amp;getfields=* Food and Drug Administration] (FDA) approval. The drug obtained FDA clearance based on data from five clinical trials, lasting two years, involving 1,827 postmenopausal women with osteoporosis in 16 different countries. The trials showed a significant increase in bone mineral density at the spine, hip, and other sites. Overall, the drug reduced the number of women with new spinal fractures by 48%, the total number of new spinal fractures by 63%, and reduced overall height loss by 35%. Today, the drug remains in circulation in caplet and liquid forms and attainable at most pharmaceutical distribution centers with an eligible prescription. &lt;br /&gt;
&lt;br /&gt;
== Side Effects &amp;lt;ref&amp;gt;Common Side Effects of Fosamax (Alendronate Sodium) Drug Center - RxList. (2015, August 26). RxList. Retrieved November 14, 2016, from  http://www.rxlist.com/fosamax-side-effects-drug-center.htm&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
Common side effects of Fosamax include gas, constipation, heartburn, diarrhea, bloating, nausea, vomiting, stomach pain, joint pain or swelling, swelling in your hands or feet, dizziness, headache, eye pain, back pain, or weakness.&lt;br /&gt;
Serious side effects of Fosamax include severe pain (joints, bone, muscle, jaw, back or heartburn), chest pain, difficulty swallowing, bloody stools, eye pain, skin blisters, and swelling of the face, tongue, or throat. &lt;br /&gt;
&lt;br /&gt;
== Structural Highlights &amp;lt;ref&amp;gt;Protein Data Bank in Europe: Bringing Structure to Biology, from http://www.ebi.ac.uk/pdbe/entry/pdb/2F89&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
As a bisphosphonate, Fosamax is a synthetic analog of [https://en.wikipedia.org/wiki/Pyrophosphate pyrophosphate], containing two phosphate groups on the central carbon. In its drug form, Fosamax includes a sodium bounded in place of a carboxyl hydrogen. In solution, oxyanions may form an ionic bond(s) with metal cations, such as magnesium. The central carbon is also attached to a hydroxyl group (-OH) and a three-carbon chain [-(CH2)3] leading to an amino group (-NH2) (Fig. 2).&lt;br /&gt;
&amp;lt;StructureSection load=&#039;2f89&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;Crystal Structure of human FPPS in complex with a bisphosphonate.&#039; scene=&#039;&#039;&amp;gt; [[Image:Screen Shot 2016-12-04 at 3.21.51 PM.png|thumb|left|200px|Figure 2. Chemical structure of Fosamax (alendronate sodium).]] &lt;br /&gt;
[[Image:Screen Shot 2016-12-02 at 3.24.13 PM.png|thumb|left|400px|Figure 3. DMAPP/GPP substrate/product site of SPSS-alendronate complex indicated by yellow eclipse.]]&lt;br /&gt;
[[Image:Screen Shot 2016-12-02 at 3.33.04 PM.png|thumb|left|400px|Figure 4. Aspartate-Magnesium cation-phosphonate chelate within FPPS-alendronate complex. Pink sphere indicates Mg2+ ion; red indicates oxygen atom, yellow indicates phosphorous atom, blue (bond-line) indicates nitrogen, blue (ribbon) indicates alpha helix motif.]] [[Image:Screen Shot 2016-12-04 at 8.42.20 PM.png|thumb|left|500px|Figure 5. Comparison between the structure of the carbocation transition states of DMAPP and GPP to the nitrogen-containing bisphosphonate alendronate. Close similarity suggests that Fosamax acts as carbocation transition state analog of isoprenoid diphosphates &amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;.]]&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Mechanism of Action ==&lt;br /&gt;
Functioning as a nitrogen-containing, second generation bisphosphonate, Fosamax binds to hydroxyapatite in bone and promotes apoptosis in osteoclasts (cells specialized in skeletal breakdown) (Fig. 6), thus slowing the breakdown of osseous tissue&amp;lt;ref&amp;gt;Drake, Matthew T., Bart L. Clarke, and Sundeep Khosla. &amp;quot;Bisphosphonates: Mechanism of Action and Role in Clinical Practice.&amp;quot; Mayo Clinic Proceedings 83, no. 9 (2008): 1032-045. doi:10.4065/83.9.1032.&amp;lt;/ref&amp;gt;. In order to accomplish this, Fosamax inhibits [http://www.uniprot.org/uniprot/P14324 farnesyl pyrophosphate synthase] (FPPS), an enzyme which plays a role within the [https://en.wikipedia.org/wiki/Mevalonate_pathway mevalonic acid pathway], thereby reducing the production rate of isoprenoid compounds that are essential for post-translational modification of small guanosine triphosphate (GTP)-binding proteins (e.g. Rho, Rab and [https://pdb101.rcsb.org/motm/148 Ras])&amp;lt;ref&amp;gt;Luckman SP, Hughes DE, Coxon FP, Russell RGG, Rogers MJ (2005). Nitrogen-Containing Biphosphonates Inhibit the Mevalonate Pathway and Prevent Post-Translational Prenylation of GTP-Binding Proteins, Including Ras. Journal of Bone and Mineral Research. 20, 1265–74&amp;lt;/ref&amp;gt;. By inhibiting FPPS, Fosamax discourages the successive condensation of isopentenyl pyrophosphate with dimethylallyl pyrophosphate to geranyl pyrophosphate, which interferes with osteoclast function and survival &amp;lt;ref&amp;gt;Alendronic acid. (2005, June 13), from http://www.drugbank.ca/drugs/DB00630#bond-15126&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;Fisher, J. E., Rogers, M. J., Halasy, J. M., Luckman, S. P., Hughes, D. E., Masarachia, P. J., … Reszka, A. A. (1999). Alendronate mechanism of action: geranylgeraniol, an intermediate in the mevalonate pathway, prevents inhibition of osteoclast formation, bone resorption, and kinase activation in vitro. Proceedings of the National Academy of Sciences, 96(1), 133–138. doi:10.1073/pnas.96.1.133, from http://www.pnas.org/content/96/1/133.full.pdf&amp;lt;/ref&amp;gt;. [[Image:Screen Shot 2016-12-04 at 8.23.53 PM.png|thumb|right|400px|Figure 6. Relationship between bisphosphonates and osteoclasts at individual stages of cellular life.&amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;]]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Though the exact chemical mechanism by which alendronate inhibits FPPS remains unclear, nitrogen-containing bisphosphates (&amp;lt;scene name=&#039;74/745950/Ligand/2&#039;&amp;gt;N-BP&amp;lt;/scene&amp;gt;s) bind to the dimethylallyl/geranyl pyrophosphate (DMAPP/GPP) ligand pocket (Fig. 3) and alter the secondary structure of the enzyme&amp;lt;ref&amp;gt;Kavanagh KL, Guo K, Dunford JE, Wu X, Knapp S, and Ebetino FH (2006). The molecular mechanism of nitrogen-containing bisphosphonates as antiosteoporosis drugs. Proceedings of the National Academy of Sciences. 103, 7829–34&amp;lt;/ref&amp;gt;. Specifically, alendronate may bind to the FPPS allylic substrate-binding pocket by ligating the Magnesium ion center via phosphonate oxyanion nucleophilic attack&amp;lt;ref&amp;gt;Hosfield DJ, Zhang Y, Dougan DR, Broun A, Tari LW, Swanson RV (2003). Structural Basis for Bisphosphonate-mediated Inhibition of Isoprenoid Biosynthesis. Journal of Biological Chemistry. 2279, 8526–9&amp;lt;/ref&amp;gt;. Phosphonate groups are stabilized by a cluster of three Mg2+ ions via oxyanion-metal cation charge interactions, as well as three FPPS-conserved aspartate residues located within two alpha helical motifs (&amp;lt;scene name=&#039;74/745950/Aspartates/2&#039;&amp;gt;Asp-103, 107, and 243&amp;lt;/scene&amp;gt;) that form a &amp;lt;scene name=&#039;74/745950/Correct_ligand_binding_site/8&#039;&amp;gt;magnesium-bisphosphonate chelate&amp;lt;/scene&amp;gt; (Fig. 4)&amp;lt;ref&amp;gt;Tarshis L. C., Yan M., Poulter C. D., Sacchettini J. C. (1994) Biochemistry. 33, 10871–10877.&amp;lt;/ref&amp;gt;. N-BPs may bind to the GPP substrate-binding site because N-BPs resemble the structure of the enzyme’s natural substrates (GPP and DMAPP) and act as carbocation transition state analogs (Fig. 5). Interactions between N-BP and amino acid residues (&amp;lt;scene name=&#039;74/745950/Lys200_thr201/3&#039;&amp;gt;Thr-201 and Lys-200&amp;lt;/scene&amp;gt;) suggest that these inhibitors position nitrogen in the carbocation-binding site, then mimic the carbocation intermediate formed via substrate ionization &amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;. By acting as a transition state analog for isoprenoid biosynthesis, Fosamax effectively increases the activation energy of a regulatory/rate-determining step in the mevalonate pathway, subsequently reducing the concentration of product molecules that aid the continuous biodegradation of skeletal tissue.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== References ==&lt;br /&gt;
&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Contributors and Editors ==&lt;br /&gt;
&lt;br /&gt;
[[User:Alyssa Jewel D. Floro|Floro, Alyssa Jewel D.]] [[User:Justin Myles Kidd|Kidd, Justin M.]] [[User:Osna M. Samady|Samady, Osna M.]]&lt;/div&gt;</summary>
		<author><name>Justin Myles Kidd</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Fosamax_(alendronate_sodium)&amp;diff=2688652</id>
		<title>Fosamax (alendronate sodium)</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Fosamax_(alendronate_sodium)&amp;diff=2688652"/>
		<updated>2016-12-06T02:07:28Z</updated>

		<summary type="html">&lt;p&gt;Justin Myles Kidd: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;scene name=&#039;74/745950/Correct_ligand_binding_site/3&#039;&amp;gt;&amp;lt;/scene&amp;gt;&amp;lt;table style=&amp;quot;width:200px; border:1px solid black; float:right; &amp;quot;&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td colspan=&amp;quot;2&amp;quot;&amp;gt;&amp;lt;center&amp;gt; FOSAMAX &amp;lt;/center&amp;gt;&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td colspan=&amp;quot;2&amp;quot;&amp;gt;&amp;lt;center&amp;gt;[[Image:Fosamax.gif|thumb|center|200px|Figure 1. Fosamax prescription drug, tablet form.]]&amp;lt;/center&amp;gt;&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Formula:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;C4H13NO7P2&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Molar Mass:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;249.097 g/mol&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;INN:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Alendronic Acid&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;USAN:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Alendronate sodium&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;IUPAC:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;4-amino-1-hydroxybutylidene) bisphosphonic acid monosodium salt trihydrate&lt;br /&gt;
&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;/table&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Fosamax (Alendronate Sodium or Alendronic Acid) is a pharmaceutical drug administered as an antiresorptive therapy agent for osteodegenerative diseases such as [https://en.wikipedia.org/wiki/Osteoporosis Osteoporosis], [https://en.wikipedia.org/wiki/Paget&#039;s_disease_of_bone Paget&#039;s disease], and [https://en.wikipedia.org/wiki/Osteogenesis_imperfecta osteogenesis imperfecta]&amp;lt;ref&amp;gt;Gong Li, Altman Russ B, Klein Teri E . &amp;quot;Bisphosphonates pathway&amp;quot; Pharmacogenetics and genomics (2011). from https://www.pharmgkb.org/pathway/PA154423660&amp;lt;/ref&amp;gt;.&lt;br /&gt;
Functioning as a nitrogen-containing, second generation [https://en.wikipedia.org/wiki/Bisphosphonate bisphosphonate], Fosamax binds to [https://en.wikipedia.org/wiki/Hydroxylapatite hydroxyapatite] in bone and promotes [https://en.wikipedia.org/wiki/Apoptosis apoptosis] in [https://en.wikipedia.org/wiki/Osteoclast osteoclasts] (cells specialized in skeletal breakdown), thereby delaying the degradation of osseous tissue. While incorporated in the bone matrix, alendronate is not pharmacologically active; therefore, it must be continuously administered to suppress osteoclasts on newly formed resorption surfaces &amp;lt;ref&amp;gt;Fosamax: Uses, Dosage &amp;amp; Side Effects - Drugs.com. (2016, November 3).Fosamax: Uses, Dosage &amp;amp; Side Effects - Drugs.com. Retrieved November 14, 2016, from https://www.drugs.com/fosamax.html&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
== History &amp;lt;ref&amp;gt;Fosamax (alendronate sodium). Fosamax New FDA Drug Approval | CenterWatch. Merck. Retrieved November 15, 2016, from http://www.centerwatch.com/drug-information/fda-approved-drugs/drug/26/fosamax-alendronate-sodium&amp;lt;/ref&amp;gt;==&lt;br /&gt;
Fosamax has been in use since September 29, 1995 after gaining [http://google2.fda.gov/search?q=fosamax&amp;amp;client=FDAgov&amp;amp;site=FDAgov&amp;amp;lr=&amp;amp;proxystylesheet=FDAgov&amp;amp;requiredfields=-archive%3AYes&amp;amp;output=xml_no_dtd&amp;amp;getfields=* Food and Drug Administration] (FDA) approval. The drug obtained FDA clearance based on data from five clinical trials, lasting two years, involving 1,827 postmenopausal women with osteoporosis in 16 different countries. The trials showed a significant increase in bone mineral density at the spine, hip, and other sites. Overall, the drug reduced the number of women with new spinal fractures by 48%, the total number of new spinal fractures by 63%, and reduced overall height loss by 35%. Today, the drug remains in circulation in caplet and liquid forms and attainable at most pharmaceutical distribution centers with an eligible prescription. &lt;br /&gt;
&lt;br /&gt;
== Side Effects &amp;lt;ref&amp;gt;Common Side Effects of Fosamax (Alendronate Sodium) Drug Center - RxList. (2015, August 26). RxList. Retrieved November 14, 2016, from  http://www.rxlist.com/fosamax-side-effects-drug-center.htm&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
Common side effects of Fosamax include gas, constipation, heartburn, diarrhea, bloating, nausea, vomiting, stomach pain, joint pain or swelling, swelling in your hands or feet, dizziness, headache, eye pain, back pain, or weakness.&lt;br /&gt;
Serious side effects of Fosamax include severe pain (joints, bone, muscle, jaw, back or heartburn), chest pain, difficulty swallowing, bloody stools, eye pain, skin blisters, and swelling of the face, tongue, or throat. &lt;br /&gt;
&lt;br /&gt;
== Structural Highlights &amp;lt;ref&amp;gt;Protein Data Bank in Europe: Bringing Structure to Biology, from http://www.ebi.ac.uk/pdbe/entry/pdb/2F89&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
As a bisphosphonate, Fosamax is a synthetic analog of [https://en.wikipedia.org/wiki/Pyrophosphate pyrophosphate], containing two phosphate groups on the central carbon. In its drug form, Fosamax includes a sodium bounded in place of a carboxyl hydrogen. In solution, oxyanions may form an ionic bond(s) with metal cations, such as magnesium. The central carbon is also attached to a hydroxyl group (-OH) and a three-carbon chain [-(CH2)3] leading to an amino group (-NH2) (Fig. 2).&lt;br /&gt;
&amp;lt;StructureSection load=&#039;2f89&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;Crystal Structure of human FPPS in complex with a bisphosphonate.&#039; scene=&#039;&#039;&amp;gt; [[Image:Screen Shot 2016-12-04 at 3.21.51 PM.png|thumb|left|200px|Figure 2. Chemical structure of Fosamax (alendronate sodium).]] &lt;br /&gt;
[[Image:Screen Shot 2016-12-02 at 3.24.13 PM.png|thumb|left|400px|Figure 3. DMAPP/GPP substrate/product site of SPSS-alendronate complex indicated by yellow eclipse.]]&lt;br /&gt;
[[Image:Screen Shot 2016-12-02 at 3.33.04 PM.png|thumb|left|400px|Figure 4. Aspartate-Magnesium cation-phosphonate chelate within FPPS-alendronate complex. Pink sphere indicates Mg2+ ion; red indicates oxygen atom, yellow indicates phosphorous atom, blue (bond-line) indicates nitrogen, blue (ribbon) indicates alpha helix motif.]] [[Image:Screen Shot 2016-12-04 at 8.42.20 PM.png|thumb|left|500px|Figure 5. Comparison between the structure of the carbocation transition states of DMAPP and GPP to the nitrogen-containing bisphosphonate alendronate. Close similarity suggests that Fosamax acts as carbocation transition state analog of isoprenoid diphosphates &amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;.]]&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Mechanism of Action ==&lt;br /&gt;
Functioning as a nitrogen-containing, second generation bisphosphonate, Fosamax binds to hydroxyapatite in bone and promotes apoptosis in osteoclasts (cells specialized in skeletal breakdown) (Fig. 6), thus slowing the breakdown of osseous tissue&amp;lt;ref&amp;gt;Drake, Matthew T., Bart L. Clarke, and Sundeep Khosla. &amp;quot;Bisphosphonates: Mechanism of Action and Role in Clinical Practice.&amp;quot; Mayo Clinic Proceedings 83, no. 9 (2008): 1032-045. doi:10.4065/83.9.1032.&amp;lt;/ref&amp;gt;. In order to accomplish this, Fosamax inhibits [http://www.uniprot.org/uniprot/P14324 farnesyl pyrophosphate synthase] (FPPS), an enzyme which plays a role within the [https://en.wikipedia.org/wiki/Mevalonate_pathway mevalonic acid pathway], thereby reducing the production rate of isoprenoid compounds that are essential for post-translational modification of small guanosine triphosphate (GTP)-binding proteins (e.g. Rho, Rab and [https://pdb101.rcsb.org/motm/148 Ras])&amp;lt;ref&amp;gt;Luckman SP, Hughes DE, Coxon FP, Russell RGG, Rogers MJ (2005). Nitrogen-Containing Biphosphonates Inhibit the Mevalonate Pathway and Prevent Post-Translational Prenylation of GTP-Binding Proteins, Including Ras. Journal of Bone and Mineral Research. 20, 1265–74&amp;lt;/ref&amp;gt;. By inhibiting FPPS, Fosamax discourages the successive condensation of isopentenyl pyrophosphate with dimethylallyl pyrophosphate to geranyl pyrophosphate, which interferes with osteoclast function and survival &amp;lt;ref&amp;gt;Alendronic acid. (2005, June 13), from http://www.drugbank.ca/drugs/DB00630#bond-15126&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;Fisher, J. E., Rogers, M. J., Halasy, J. M., Luckman, S. P., Hughes, D. E., Masarachia, P. J., … Reszka, A. A. (1999). Alendronate mechanism of action: geranylgeraniol, an intermediate in the mevalonate pathway, prevents inhibition of osteoclast formation, bone resorption, and kinase activation in vitro. Proceedings of the National Academy of Sciences, 96(1), 133–138. doi:10.1073/pnas.96.1.133, from http://www.pnas.org/content/96/1/133.full.pdf&amp;lt;/ref&amp;gt;. [[Image:Screen Shot 2016-12-04 at 8.23.53 PM.png|thumb|right|400px|Figure 6. Relationship between bisphosphonates and osteoclasts at individual stages of cellular life.&amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;]]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Though the exact chemical mechanism by which alendronate inhibits FPPS remains unclear, nitrogen-containing bisphosphates (&amp;lt;scene name=&#039;74/745950/Ligand/2&#039;&amp;gt;N-BP&amp;lt;/scene&amp;gt;s) bind to the dimethylallyl/geranyl pyrophosphate (DMAPP/GPP) ligand pocket (Fig. 3) and alter the secondary structure of the enzyme&amp;lt;ref&amp;gt;Kavanagh KL, Guo K, Dunford JE, Wu X, Knapp S, and Ebetino FH (2006). The molecular mechanism of nitrogen-containing bisphosphonates as antiosteoporosis drugs. Proceedings of the National Academy of Sciences. 103, 7829–34&amp;lt;/ref&amp;gt;. Specifically, alendronate may bind to the FPPS allylic substrate-binding pocket by ligating the Magnesium ion center via phosphonate oxyanion nucleophilic attack&amp;lt;ref&amp;gt;Hosfield DJ, Zhang Y, Dougan DR, Broun A, Tari LW, Swanson RV (2003). Structural Basis for Bisphosphonate-mediated Inhibition of Isoprenoid Biosynthesis. Journal of Biological Chemistry. 2279, 8526–9&amp;lt;/ref&amp;gt;. Phosphonate groups are stabilized by a cluster of three Mg2+ ions via oxyanion-metal cation charge interactions, as well as three FPPS-conserved aspartate residues located within two alpha helical motifs (&amp;lt;scene name=&#039;74/745950/Aspartates/2&#039;&amp;gt;Asp-103, 107, and 243&amp;lt;/scene&amp;gt;) that form a &amp;lt;scene name=&#039;74/745950/Correct_ligand_binding_site/7&#039;&amp;gt;magnesium-bisphosphonate chelate&amp;lt;/scene&amp;gt; (Fig. 4)&amp;lt;ref&amp;gt;Tarshis L. C., Yan M., Poulter C. D., Sacchettini J. C. (1994) Biochemistry. 33, 10871–10877.&amp;lt;/ref&amp;gt;. N-BPs may bind to the GPP substrate-binding site because N-BPs resemble the structure of the enzyme’s natural substrates (GPP and DMAPP) and act as carbocation transition state analogs (Fig. 5). Interactions between N-BP and amino acid residues (&amp;lt;scene name=&#039;74/745950/Lys200_thr201/3&#039;&amp;gt;Thr-201 and Lys-200&amp;lt;/scene&amp;gt;) suggest that these inhibitors position nitrogen in the carbocation-binding site, then mimic the carbocation intermediate formed via substrate ionization &amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;. By acting as a transition state analog for isoprenoid biosynthesis, Fosamax effectively increases the activation energy of a regulatory/rate-determining step in the mevalonate pathway, subsequently reducing the concentration of product molecules that aid the continuous biodegradation of skeletal tissue.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== References ==&lt;br /&gt;
&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Contributors and Editors ==&lt;br /&gt;
&lt;br /&gt;
[[User:Alyssa Jewel D. Floro|Floro, Alyssa Jewel D.]] [[User:Justin Myles Kidd|Kidd, Justin M.]] [[User:Osna M. Samady|Samady, Osna M.]]&lt;/div&gt;</summary>
		<author><name>Justin Myles Kidd</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Fosamax_(alendronate_sodium)&amp;diff=2688624</id>
		<title>Fosamax (alendronate sodium)</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Fosamax_(alendronate_sodium)&amp;diff=2688624"/>
		<updated>2016-12-06T01:35:10Z</updated>

		<summary type="html">&lt;p&gt;Justin Myles Kidd: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;scene name=&#039;74/745950/Correct_ligand_binding_site/3&#039;&amp;gt;&amp;lt;/scene&amp;gt;&amp;lt;table style=&amp;quot;width:200px; border:1px solid black; float:right; &amp;quot;&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td colspan=&amp;quot;2&amp;quot;&amp;gt;&amp;lt;center&amp;gt; FOSAMAX &amp;lt;/center&amp;gt;&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td colspan=&amp;quot;2&amp;quot;&amp;gt;&amp;lt;center&amp;gt;[[Image:Fosamax.gif|thumb|center|200px|Figure 1. Fosamax prescription drug, tablet form.]]&amp;lt;/center&amp;gt;&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Formula:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;C4H13NO7P2&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Molar Mass:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;249.097 g/mol&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;INN:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Alendronic Acid&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;USAN:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Alendronate sodium&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;IUPAC:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;4-amino-1-hydroxybutylidene) bisphosphonic acid monosodium salt trihydrate&lt;br /&gt;
&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;/table&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Fosamax (Alendronate Sodium or Alendronic Acid) is a pharmaceutical drug administered as an antiresorptive therapy agent for osteodegenerative diseases such as [https://en.wikipedia.org/wiki/Osteoporosis Osteoporosis], [https://en.wikipedia.org/wiki/Paget&#039;s_disease_of_bone Paget&#039;s disease], and [https://en.wikipedia.org/wiki/Osteogenesis_imperfecta osteogenesis imperfecta]&amp;lt;ref&amp;gt;Gong Li, Altman Russ B, Klein Teri E . &amp;quot;Bisphosphonates pathway&amp;quot; Pharmacogenetics and genomics (2011). from https://www.pharmgkb.org/pathway/PA154423660&amp;lt;/ref&amp;gt;.&lt;br /&gt;
Functioning as a nitrogen-containing, second generation [https://en.wikipedia.org/wiki/Bisphosphonate bisphosphonate], Fosamax binds to [https://en.wikipedia.org/wiki/Hydroxylapatite hydroxyapatite] in bone and promotes [https://en.wikipedia.org/wiki/Apoptosis apoptosis] in [https://en.wikipedia.org/wiki/Osteoclast osteoclasts] (cells specialized in skeletal breakdown), thereby delaying the degradation of osseous tissue. While incorporated in the bone matrix, alendronate is not pharmacologically active; therefore, it must be continuously administered to suppress osteoclasts on newly formed resorption surfaces &amp;lt;ref&amp;gt;Fosamax: Uses, Dosage &amp;amp; Side Effects - Drugs.com. (2016, November 3).Fosamax: Uses, Dosage &amp;amp; Side Effects - Drugs.com. Retrieved November 14, 2016, from https://www.drugs.com/fosamax.html&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
== History &amp;lt;ref&amp;gt;Fosamax (alendronate sodium). Fosamax New FDA Drug Approval | CenterWatch. Merck. Retrieved November 15, 2016, from http://www.centerwatch.com/drug-information/fda-approved-drugs/drug/26/fosamax-alendronate-sodium&amp;lt;/ref&amp;gt;==&lt;br /&gt;
Fosamax has been in use since September 29, 1995 after gaining [http://google2.fda.gov/search?q=fosamax&amp;amp;client=FDAgov&amp;amp;site=FDAgov&amp;amp;lr=&amp;amp;proxystylesheet=FDAgov&amp;amp;requiredfields=-archive%3AYes&amp;amp;output=xml_no_dtd&amp;amp;getfields=* Food and Drug Administration] (FDA) approval. The drug obtained FDA clearance based on data from five clinical trials, lasting two years, involving 1,827 postmenopausal women with osteoporosis in 16 different countries. The trials showed a significant increase in bone mineral density at the spine, hip, and other sites. Overall, the drug reduced the number of women with new spinal fractures by 48%, the total number of new spinal fractures by 63%, and reduced overall height loss by 35%. Today, the drug remains in circulation in caplet and liquid forms and attainable at most pharmaceutical distribution centers with an eligible prescription. &lt;br /&gt;
&lt;br /&gt;
== Side Effects &amp;lt;ref&amp;gt;Common Side Effects of Fosamax (Alendronate Sodium) Drug Center - RxList. (2015, August 26). RxList. Retrieved November 14, 2016, from  http://www.rxlist.com/fosamax-side-effects-drug-center.htm&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
Common side effects of Fosamax include gas, constipation, heartburn, diarrhea, bloating, nausea, vomiting, stomach pain, joint pain or swelling, swelling in your hands or feet, dizziness, headache, eye pain, back pain, or weakness.&lt;br /&gt;
Serious side effects of Fosamax include severe pain (joints, bone, muscle, jaw, back or heartburn), chest pain, difficulty swallowing, bloody stools, eye pain, skin blisters, and swelling of the face, tongue, or throat. &lt;br /&gt;
&lt;br /&gt;
== Structural Highlights &amp;lt;ref&amp;gt;Protein Data Bank in Europe: Bringing Structure to Biology, from http://www.ebi.ac.uk/pdbe/entry/pdb/2F89&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
As a bisphosphonate, Fosamax is a synthetic analog of [https://en.wikipedia.org/wiki/Pyrophosphate pyrophosphate], containing two phosphate groups on the central carbon. In its drug form, Fosamax includes a sodium bounded in place of a carboxyl hydrogen. In solution, oxyanions may form an ionic bond(s) with metal cations such as magnesium. The central carbon is also attached to a hydroxyl group (-OH) and a three-carbon chain [-(CH2)3] leading to an amino group (-NH2) (Fig. 2).&lt;br /&gt;
&amp;lt;StructureSection load=&#039;2f89&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;Crystal Structure of human FPPS in complex with a bisphosphonate.&#039; scene=&#039;&#039;&amp;gt; [[Image:Screen Shot 2016-12-04 at 3.21.51 PM.png|thumb|left|200px|Figure 2. Chemical structure of Fosamax (alendronate sodium).]] &lt;br /&gt;
[[Image:Screen Shot 2016-12-02 at 3.24.13 PM.png|thumb|left|400px|Figure 3. DMAPP/GPP substrate/product site of SPSS-alendronate complex indicated by yellow eclipse.]]&lt;br /&gt;
[[Image:Screen Shot 2016-12-02 at 3.33.04 PM.png|thumb|left|400px|Figure 4. Aspartate-Magnesium cation-phosphonate chelate within FPPS-alendronate complex. Pink sphere indicates Mg2+ ion; red indicates oxygen atom, yellow indicates phosphorous atom, blue (bond-line) indicates nitrogen, blue (ribbon) indicates alpha helix motif.]] [[Image:Screen Shot 2016-12-04 at 8.42.20 PM.png|thumb|left|500px|Figure 5. Comparison between the structure of the carbocation transition states of DMAPP and GPP to the nitrogen-containing bisphosphonate alendronate. Close similarity suggests that Fosamax acts as carbocation transition state analog of isoprenoid diphosphates &amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;.]]&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Mechanism of Action ==&lt;br /&gt;
Functioning as a nitrogen-containing, second generation bisphosphonate, Fosamax binds to hydroxyapatite in bone and promotes apoptosis in osteoclasts (cells specialized in skeletal breakdown) (Fig. 6), thus slowing the breakdown of osseous tissue&amp;lt;ref&amp;gt;Drake, Matthew T., Bart L. Clarke, and Sundeep Khosla. &amp;quot;Bisphosphonates: Mechanism of Action and Role in Clinical Practice.&amp;quot; Mayo Clinic Proceedings 83, no. 9 (2008): 1032-045. doi:10.4065/83.9.1032.&amp;lt;/ref&amp;gt;. In order to accomplish this, Fosamax inhibits [http://www.uniprot.org/uniprot/P14324 farnesyl pyrophosphate synthase] (FPPS), an enzyme which plays a role within the [https://en.wikipedia.org/wiki/Mevalonate_pathway mevalonic acid pathway], thereby reducing the production rate of isoprenoid compounds that are essential for post-translational modification of small guanosine triphosphate (GTP)-binding proteins (e.g. Rho, Rab and [https://pdb101.rcsb.org/motm/148 Ras])&amp;lt;ref&amp;gt;Luckman SP, Hughes DE, Coxon FP, Russell RGG, Rogers MJ (2005). Nitrogen-Containing Biphosphonates Inhibit the Mevalonate Pathway and Prevent Post-Translational Prenylation of GTP-Binding Proteins, Including Ras. Journal of Bone and Mineral Research. 20, 1265–74&amp;lt;/ref&amp;gt;. By inhibiting FPPS, Fosamax discourages the successive condensation of isopentenyl pyrophosphate with dimethylallyl pyrophosphate and geranyl pyrophosphate, which interferes with osteoclast function and survival &amp;lt;ref&amp;gt;Alendronic acid. (2005, June 13), from http://www.drugbank.ca/drugs/DB00630#bond-15126&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;Fisher, J. E., Rogers, M. J., Halasy, J. M., Luckman, S. P., Hughes, D. E., Masarachia, P. J., … Reszka, A. A. (1999). Alendronate mechanism of action: geranylgeraniol, an intermediate in the mevalonate pathway, prevents inhibition of osteoclast formation, bone resorption, and kinase activation in vitro. Proceedings of the National Academy of Sciences, 96(1), 133–138. doi:10.1073/pnas.96.1.133, from http://www.pnas.org/content/96/1/133.full.pdf&amp;lt;/ref&amp;gt;. [[Image:Screen Shot 2016-12-04 at 8.23.53 PM.png|thumb|right|400px|Figure 6. Relationship between bisphosphonates and osteoclasts at individual stages of cellular life.&amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;]]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Though the exact chemical mechanism by which alendronate inhibits FPPS remains unclear, nitrogen-containing bisphosphates (&amp;lt;scene name=&#039;74/745950/Ligand/2&#039;&amp;gt;N-BP&amp;lt;/scene&amp;gt;s) bind to the dimethylallyl/geranyl pyrophosphate (DMAPP/GPP) ligand pocket (Fig. 3) and alter the secondary structure of the enzyme&amp;lt;ref&amp;gt;Kavanagh KL, Guo K, Dunford JE, Wu X, Knapp S, and Ebetino FH (2006). The molecular mechanism of nitrogen-containing bisphosphonates as antiosteoporosis drugs. Proceedings of the National Academy of Sciences. 103, 7829–34&amp;lt;/ref&amp;gt;. Specifically, alendronate may bind to the FPPS allylic substrate-binding pocket by ligating the Magnesium ion center via phosphonate oxyanion nucleophilic attack&amp;lt;ref&amp;gt;Hosfield DJ, Zhang Y, Dougan DR, Broun A, Tari LW, Swanson RV (2003). Structural Basis for Bisphosphonate-mediated Inhibition of Isoprenoid Biosynthesis. Journal of Biological Chemistry. 2279, 8526–9&amp;lt;/ref&amp;gt;. Phosphonate groups are stabilized by a cluster of three Mg2+ ions via oxyanion-metal cation charge interactions, as well as three FPPS-conserved aspartate residues located within two alpha helical motifs (&amp;lt;scene name=&#039;74/745950/Aspartates/2&#039;&amp;gt;Asp-103, 107, and 243&amp;lt;/scene&amp;gt;) that form a &amp;lt;scene name=&#039;74/745950/Correct_ligand_binding_site/7&#039;&amp;gt;magnesium-bisphosphonate chelate&amp;lt;/scene&amp;gt; (Fig. 4)&amp;lt;ref&amp;gt;Tarshis L. C., Yan M., Poulter C. D., Sacchettini J. C. (1994) Biochemistry. 33, 10871–10877.&amp;lt;/ref&amp;gt;. N-BPs may bind to the GPP substrate-binding site because N-BPs resemble the structure of the enzyme’s natural substrates (GPP and DMAPP) and act as carbocation transition state analogs (Fig. 5). Interactions between N-BP and amino acid residues (&amp;lt;scene name=&#039;74/745950/Lys200_thr201/3&#039;&amp;gt;Thr-201 and Lys-200&amp;lt;/scene&amp;gt;) suggest that these inhibitors position nitrogen in the carbocation-binding site, then mimic the carbocation intermediate formed via substrate ionization &amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;. By acting as a transition state analog for isoprenoid biosynthesis, Fosamax effectively increases the activation energy of a regulatory/rate-determining step in the mevalonate pathway, subsequently reducing the concentration of product molecules that aid the continuous biodegradation of skeletal tissue.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== References ==&lt;br /&gt;
&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Contributors and Editors ==&lt;br /&gt;
&lt;br /&gt;
[[User:Alyssa Jewel D. Floro|Floro, Alyssa Jewel D.]] [[User:Justin Myles Kidd|Kidd, Justin M.]] [[User:Osna M. Samady|Samady, Osna M.]]&lt;/div&gt;</summary>
		<author><name>Justin Myles Kidd</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Fosamax_(alendronate_sodium)&amp;diff=2688506</id>
		<title>Fosamax (alendronate sodium)</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Fosamax_(alendronate_sodium)&amp;diff=2688506"/>
		<updated>2016-12-05T22:44:48Z</updated>

		<summary type="html">&lt;p&gt;Justin Myles Kidd: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;scene name=&#039;74/745950/Correct_ligand_binding_site/3&#039;&amp;gt;&amp;lt;/scene&amp;gt;&amp;lt;table style=&amp;quot;width:200px; border:1px solid black; float:right; &amp;quot;&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td colspan=&amp;quot;2&amp;quot;&amp;gt;&amp;lt;center&amp;gt; FOSAMAX &amp;lt;/center&amp;gt;&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td colspan=&amp;quot;2&amp;quot;&amp;gt;&amp;lt;center&amp;gt;[[Image:Fosamax.gif|thumb|center|200px|Figure 1. Fosamax prescription drug, tablet form.]]&amp;lt;/center&amp;gt;&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Formula:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;C4H13NO7P2&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Molar Mass:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;249.097 g/mol&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;INN:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Alendronic Acid&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;USAN:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Alendronate sodium&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;IUPAC:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;4-amino-1-hydroxybutylidene) bisphosphonic acid monosodium salt trihydrate&lt;br /&gt;
&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;/table&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Fosamax (Alendronate Sodium or Alendronic Acid) is a pharmaceutical drug administered as an antiresorptive therapy agent for osteodegenerative diseases such as [https://en.wikipedia.org/wiki/Osteoporosis Osteoporosis], [https://en.wikipedia.org/wiki/Paget&#039;s_disease_of_bone Paget&#039;s disease], and [https://en.wikipedia.org/wiki/Osteogenesis_imperfecta osteogenesis imperfecta]&amp;lt;ref&amp;gt;Gong Li, Altman Russ B, Klein Teri E . &amp;quot;Bisphosphonates pathway&amp;quot; Pharmacogenetics and genomics (2011). from https://www.pharmgkb.org/pathway/PA154423660&amp;lt;/ref&amp;gt;.&lt;br /&gt;
Functioning as a nitrogen-containing, second generation [https://en.wikipedia.org/wiki/Bisphosphonate bisphosphonate], Fosamax binds to [https://en.wikipedia.org/wiki/Hydroxylapatite hydroxyapatite] in bone and promotes [https://en.wikipedia.org/wiki/Apoptosis apoptosis] in [https://en.wikipedia.org/wiki/Osteoclast osteoclasts] (cells specialized in skeletal breakdown), thereby delaying the degradation of osseous tissue. While incorporated in the bone matrix, alendronate is not pharmacologically active; therefore, it must be continuously administered to suppress osteoclasts on newly formed resorption surfaces &amp;lt;ref&amp;gt;Fosamax: Uses, Dosage &amp;amp; Side Effects - Drugs.com. (2016, November 3).Fosamax: Uses, Dosage &amp;amp; Side Effects - Drugs.com. Retrieved November 14, 2016, from https://www.drugs.com/fosamax.html&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
== History &amp;lt;ref&amp;gt;Fosamax (alendronate sodium). Fosamax New FDA Drug Approval | CenterWatch. Merck. Retrieved November 15, 2016, from http://www.centerwatch.com/drug-information/fda-approved-drugs/drug/26/fosamax-alendronate-sodium&amp;lt;/ref&amp;gt;==&lt;br /&gt;
Fosamax has been in use since September 29, 1995 after gaining [http://google2.fda.gov/search?q=fosamax&amp;amp;client=FDAgov&amp;amp;site=FDAgov&amp;amp;lr=&amp;amp;proxystylesheet=FDAgov&amp;amp;requiredfields=-archive%3AYes&amp;amp;output=xml_no_dtd&amp;amp;getfields=* Food and Drug Administration] (FDA) approval. The drug obtained FDA clearance based on data from five clinical trials, lasting two years, involving 1,827 postmenopausal women with osteoporosis in 16 different countries. The trials showed a significant increase in bone mineral density at the spine, hip, and other sites. Overall, the drug reduced the number of women with new spinal fractures by 48%, the total number of new spinal fractures by 63%, and reduced overall height loss by 35%. Today, the drug remains in circulation in caplet and liquid forms and attainable at most pharmaceutical distribution centers with an eligible prescription. &lt;br /&gt;
&lt;br /&gt;
== Side Effects &amp;lt;ref&amp;gt;Common Side Effects of Fosamax (Alendronate Sodium) Drug Center - RxList. (2015, August 26). RxList. Retrieved November 14, 2016, from  http://www.rxlist.com/fosamax-side-effects-drug-center.htm&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
Common side effects of Fosamax include gas, constipation, heartburn, diarrhea, bloating, nausea, vomiting, stomach pain, joint pain or swelling, swelling in your hands or feet, dizziness, headache, eye pain, back pain, or weakness.&lt;br /&gt;
Serious side effects of Fosamax include severe pain (joints, bone, muscle, jaw, back or heartburn), chest pain, difficulty swallowing, bloody stools, eye pain, skin blisters, and swelling of the face, tongue, or throat. &lt;br /&gt;
&lt;br /&gt;
== Structural Highlights &amp;lt;ref&amp;gt;Protein Data Bank in Europe: Bringing Structure to Biology, from http://www.ebi.ac.uk/pdbe/entry/pdb/2F89&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
As a bisphosphonate, Fosamax is a synthetic analog of [https://en.wikipedia.org/wiki/Pyrophosphate pyrophosphate], containing two phosphate groups on the central carbon. In its drug form, Fosamax includes a sodium bounded in place of a carboxyl hydrogen. In solution, oxyanions may form an ionic bond(s) with metal cations such as magnesium. The central carbon is also attached to a hydroxyl group (-OH) and a three-carbon chain [-(CH2)3] leading to an amino group (-NH2) (Fig. 2).&lt;br /&gt;
&amp;lt;StructureSection load=&#039;2f89&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;Crystal Structure of human FPPS in complex with a bisphosphonate.&#039; scene=&#039;&#039;&amp;gt; [[Image:Screen Shot 2016-12-04 at 3.21.51 PM.png|thumb|left|200px|Figure 2. Chemical structure of Fosamax (alendronate sodium).]] &lt;br /&gt;
[[Image:Screen Shot 2016-12-02 at 3.24.13 PM.png|thumb|left|400px|Figure 3. GPP/DMAPP ligand pocket of SPSS-alendronate complex indicated by yellow eclipse.]]&lt;br /&gt;
[[Image:Screen Shot 2016-12-02 at 3.33.04 PM.png|thumb|left|400px|Figure 4. Aspartate-Magnesium cation-phosphonate chelate within FPPS-alendronate complex. Pink sphere indicates Mg2+ ion; red indicates oxygen atom, yellow indicates phosphorous atom, blue (bond-line) indicates nitrogen, blue (ribbon) indicates alpha helix motif.]] [[Image:Screen Shot 2016-12-04 at 8.42.20 PM.png|thumb|left|500px|Figure 5. Comparison between the structure of the carbocation transition states of DMAPP and GPP to the nitrogen-containing bisphosphonate alendronate. Close similarity suggests that Fosamax acts as carbocation transition state analog of isoprenoid diphosphates &amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;.]]&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Mechanism of Action ==&lt;br /&gt;
Functioning as a nitrogen-containing, second generation bisphosphonate, Fosamax binds to hydroxyapatite in bone and promotes apoptosis in osteoclasts (cells specialized in skeletal breakdown) (Fig. 6), thus slowing the breakdown of osseous tissue&amp;lt;ref&amp;gt;Drake, Matthew T., Bart L. Clarke, and Sundeep Khosla. &amp;quot;Bisphosphonates: Mechanism of Action and Role in Clinical Practice.&amp;quot; Mayo Clinic Proceedings 83, no. 9 (2008): 1032-045. doi:10.4065/83.9.1032.&amp;lt;/ref&amp;gt;. In order to accomplish this, Fosamax inhibits [http://www.uniprot.org/uniprot/P14324 farnesyl pyrophosphate synthase] (FPPS), an enzyme which plays a role within the [https://en.wikipedia.org/wiki/Mevalonate_pathway mevalonic acid pathway], thereby reducing the production rate of isoprenoid compounds that are essential for post-translational modification of small guanosine triphosphate (GTP)-binding proteins (e.g. Rho, Rab and [https://pdb101.rcsb.org/motm/148 Ras])&amp;lt;ref&amp;gt;Luckman SP, Hughes DE, Coxon FP, Russell RGG, Rogers MJ (2005). Nitrogen-Containing Biphosphonates Inhibit the Mevalonate Pathway and Prevent Post-Translational Prenylation of GTP-Binding Proteins, Including Ras. Journal of Bone and Mineral Research. 20, 1265–74&amp;lt;/ref&amp;gt;. By inhibiting FPPS, Fosamax discourages the successive condensation of isopentenyl pyrophosphate with dimethylallyl pyrophosphate and geranyl pyrophosphate, which interferes with osteoclast function and survival &amp;lt;ref&amp;gt;Alendronic acid. (2005, June 13), from http://www.drugbank.ca/drugs/DB00630#bond-15126&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;Fisher, J. E., Rogers, M. J., Halasy, J. M., Luckman, S. P., Hughes, D. E., Masarachia, P. J., … Reszka, A. A. (1999). Alendronate mechanism of action: geranylgeraniol, an intermediate in the mevalonate pathway, prevents inhibition of osteoclast formation, bone resorption, and kinase activation in vitro. Proceedings of the National Academy of Sciences, 96(1), 133–138. doi:10.1073/pnas.96.1.133, from http://www.pnas.org/content/96/1/133.full.pdf&amp;lt;/ref&amp;gt;. [[Image:Screen Shot 2016-12-04 at 8.23.53 PM.png|thumb|right|400px|Figure 6. Relationship between bisphosphonates and osteoclasts at individual stages of cellular life.&amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;]]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Though the exact chemical mechanism by which alendronate inhibits FPPS remains unclear, nitrogen-containing bisphosphates (&amp;lt;scene name=&#039;74/745950/Ligand/2&#039;&amp;gt;N-BP&amp;lt;/scene&amp;gt;s) bind to the geranyl pyrophosphate/dimethylallyl (GPP/DMAPP) ligand binding pocket (Fig. 3) and alter the secondary structure of the enzyme&amp;lt;ref&amp;gt;Kavanagh KL, Guo K, Dunford JE, Wu X, Knapp S, and Ebetino FH (2006). The molecular mechanism of nitrogen-containing bisphosphonates as antiosteoporosis drugs. Proceedings of the National Academy of Sciences. 103, 7829–34&amp;lt;/ref&amp;gt;. Specifically, alendronate may bind to the FPPS allylic substrate-binding pocket by ligating the Magnesium ion center via phosphonate oxyanion nucleophilic attack&amp;lt;ref&amp;gt;Hosfield DJ, Zhang Y, Dougan DR, Broun A, Tari LW, Swanson RV (2003). Structural Basis for Bisphosphonate-mediated Inhibition of Isoprenoid Biosynthesis. Journal of Biological Chemistry. 2279, 8526–9&amp;lt;/ref&amp;gt;. Phosphonate groups are stabilized by a cluster of three Mg2+ ions via oxyanion-metal cation charge interactions, as well as three FPPS-conserved aspartate residues located within two alpha helical motifs (&amp;lt;scene name=&#039;74/745950/Aspartates/2&#039;&amp;gt;Asp-103, 107, and 243&amp;lt;/scene&amp;gt;) that form a &amp;lt;scene name=&#039;74/745950/Correct_ligand_binding_site/7&#039;&amp;gt;magnesium-bisphosphonate chelate&amp;lt;/scene&amp;gt; (Fig. 4)&amp;lt;ref&amp;gt;Tarshis L. C., Yan M., Poulter C. D., Sacchettini J. C. (1994) Biochemistry. 33, 10871–10877.&amp;lt;/ref&amp;gt;. N-BPs may bind to the GPP substrate-binding site because N-BPs resemble the structure of the enzyme’s natural substrates (GPP and DMAPP) and act as carbocation transition state analogs (Fig. 5). Interactions between N-BP and amino acid residues (&amp;lt;scene name=&#039;74/745950/Lys200_thr201/3&#039;&amp;gt;Thr-201 and Lys-200&amp;lt;/scene&amp;gt;) suggest that these inhibitors position nitrogen in the carbocation-binding site, then mimic the carbocation intermediate formed via substrate ionization &amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;. By acting as a transition state analog for isoprenoid biosynthesis, Fosamax effectively increases the activation energy of a regulatory/rate-determining step in the mevalonate pathway, subsequently reducing the concentration of product molecules that aid the continuous biodegradation of skeletal tissue.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== References ==&lt;br /&gt;
&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Contributors and Editors ==&lt;br /&gt;
&lt;br /&gt;
[[User:Alyssa Jewel D. Floro|Floro, Alyssa Jewel D.]] [[User:Justin Myles Kidd|Kidd, Justin M.]] [[User:Osna M. Samady|Samady, Osna M.]]&lt;/div&gt;</summary>
		<author><name>Justin Myles Kidd</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Fosamax_(alendronate_sodium)&amp;diff=2688502</id>
		<title>Fosamax (alendronate sodium)</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Fosamax_(alendronate_sodium)&amp;diff=2688502"/>
		<updated>2016-12-05T22:40:54Z</updated>

		<summary type="html">&lt;p&gt;Justin Myles Kidd: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;scene name=&#039;74/745950/Correct_ligand_binding_site/3&#039;&amp;gt;&amp;lt;/scene&amp;gt;&amp;lt;table style=&amp;quot;width:200px; border:1px solid black; float:right; &amp;quot;&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td colspan=&amp;quot;2&amp;quot;&amp;gt;&amp;lt;center&amp;gt; FOSAMAX &amp;lt;/center&amp;gt;&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td colspan=&amp;quot;2&amp;quot;&amp;gt;&amp;lt;center&amp;gt;[[Image:Fosamax.gif|thumb|center|200px|Figure 1. Fosamax prescription drug, tablet form.]]&amp;lt;/center&amp;gt;&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Formula:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;C4H13NO7P2&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Molar Mass:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;249.097 g/mol&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;INN:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Alendronic Acid&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;USAN:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Alendronate sodium&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;IUPAC:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;4-amino-1-hydroxybutylidene) bisphosphonic acid monosodium salt trihydrate&lt;br /&gt;
&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;/table&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Fosamax (Alendronate Sodium or Alendronic Acid) is a pharmaceutical drug administered as an antiresorptive therapy agent for osteodegenerative diseases such as [https://en.wikipedia.org/wiki/Osteoporosis Osteoporosis], [https://en.wikipedia.org/wiki/Paget&#039;s_disease_of_bone Paget&#039;s disease], and [https://en.wikipedia.org/wiki/Osteogenesis_imperfecta osteogenesis imperfecta]&amp;lt;ref&amp;gt;Gong Li, Altman Russ B, Klein Teri E . &amp;quot;Bisphosphonates pathway&amp;quot; Pharmacogenetics and genomics (2011). from https://www.pharmgkb.org/pathway/PA154423660&amp;lt;/ref&amp;gt;.&lt;br /&gt;
Functioning as a nitrogen-containing, second generation [https://en.wikipedia.org/wiki/Bisphosphonate bisphosphonate], Fosamax binds to [https://en.wikipedia.org/wiki/Hydroxylapatite hydroxyapatite] in bone and promotes [https://en.wikipedia.org/wiki/Apoptosis apoptosis] in [https://en.wikipedia.org/wiki/Osteoclast osteoclasts] (cells specialized in skeletal breakdown), thereby delaying the degradation of bone tissue. While incorporated in bone matrix, alendronate is not pharmacologically active, thus, it must be continuously administered to suppress osteoclasts on newly formed resorption surfaces &amp;lt;ref&amp;gt;Fosamax: Uses, Dosage &amp;amp; Side Effects - Drugs.com. (2016, November 3).Fosamax: Uses, Dosage &amp;amp; Side Effects - Drugs.com. Retrieved November 14, 2016, from https://www.drugs.com/fosamax.html&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
== History &amp;lt;ref&amp;gt;Fosamax (alendronate sodium). Fosamax New FDA Drug Approval | CenterWatch. Merck. Retrieved November 15, 2016, from http://www.centerwatch.com/drug-information/fda-approved-drugs/drug/26/fosamax-alendronate-sodium&amp;lt;/ref&amp;gt;==&lt;br /&gt;
Fosamax has been in use since September 29, 1995 after gaining [http://google2.fda.gov/search?q=fosamax&amp;amp;client=FDAgov&amp;amp;site=FDAgov&amp;amp;lr=&amp;amp;proxystylesheet=FDAgov&amp;amp;requiredfields=-archive%3AYes&amp;amp;output=xml_no_dtd&amp;amp;getfields=* Food and Drug Administration] (FDA) approval. The drug obtained FDA clearance based on data from five clinical trials, lasting two years, involving 1,827 postmenopausal women with osteoporosis in 16 different countries. The trials showed a significant increase in bone mineral density at the spine, hip, and other sites. Overall, the drug reduced the number of women with new spinal fractures by 48%, the total number of new spinal fractures by 63%, and reduced overall height loss by 35%. Today, the drug remains in circulation in caplet and liquid forms and attainable at most pharmaceutical distribution centers with an eligible prescription. &lt;br /&gt;
&lt;br /&gt;
== Side Effects &amp;lt;ref&amp;gt;Common Side Effects of Fosamax (Alendronate Sodium) Drug Center - RxList. (2015, August 26). RxList. Retrieved November 14, 2016, from  http://www.rxlist.com/fosamax-side-effects-drug-center.htm&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
Common side effects of Fosamax include gas, constipation, heartburn, diarrhea, bloating, nausea, vomiting, stomach pain, joint pain or swelling, swelling in your hands or feet, dizziness, headache, eye pain, back pain, or weakness.&lt;br /&gt;
Serious side effects of Fosamax include severe pain (joints, bone, muscle, jaw, back or heartburn), chest pain, difficulty swallowing, bloody stools, eye pain, skin blisters, and swelling of the face, tongue, or throat. &lt;br /&gt;
&lt;br /&gt;
== Structural Highlights &amp;lt;ref&amp;gt;Protein Data Bank in Europe: Bringing Structure to Biology, from http://www.ebi.ac.uk/pdbe/entry/pdb/2F89&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
As a bisphosphonate, Fosamax is a synthetic analog of [https://en.wikipedia.org/wiki/Pyrophosphate pyrophosphate], containing two phosphate groups on the central carbon. In its drug form, Fosamax includes a sodium bounded in place of a carboxyl hydrogen. In solution, oxyanions may form an ionic bond(s) with metal cations such as magnesium. The central carbon is also attached to a hydroxyl group (-OH) and a three-carbon chain [-(CH2)3] leading to an amino group (-NH2) (Fig. 2).&lt;br /&gt;
&amp;lt;StructureSection load=&#039;2f89&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;Crystal Structure of human FPPS in complex with a bisphosphonate.&#039; scene=&#039;&#039;&amp;gt; [[Image:Screen Shot 2016-12-04 at 3.21.51 PM.png|thumb|left|200px|Figure 2. Chemical structure of Fosamax (alendronate sodium).]] &lt;br /&gt;
[[Image:Screen Shot 2016-12-02 at 3.24.13 PM.png|thumb|left|400px|Figure 3. GPP/DMAPP ligand pocket of SPSS-alendronate complex indicated by yellow eclipse.]]&lt;br /&gt;
[[Image:Screen Shot 2016-12-02 at 3.33.04 PM.png|thumb|left|400px|Figure 4. Aspartate-Magnesium cation-phosphonate chelate within FPPS-alendronate complex. Pink sphere indicates Mg2+ ion; red indicates oxygen atom, yellow indicates phosphorous atom, blue (bond-line) indicates nitrogen, blue (ribbon) indicates alpha helix motif.]] [[Image:Screen Shot 2016-12-04 at 8.42.20 PM.png|thumb|left|500px|Figure 5. Comparison between the structure of the carbocation transition states of DMAPP and GPP to the nitrogen-containing bisphosphonate alendronate. Close similarity suggests that Fosamax acts as carbocation transition state analog of isoprenoid diphosphates &amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;.]]&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Mechanism of Action ==&lt;br /&gt;
Functioning as a nitrogen-containing, second generation bisphosphonate, Fosamax binds to hydroxyapatite in bone and promotes apoptosis in osteoclasts (cells specialized in skeletal breakdown) (Fig. 6), thus slowing the breakdown of bone&amp;lt;ref&amp;gt;Drake, Matthew T., Bart L. Clarke, and Sundeep Khosla. &amp;quot;Bisphosphonates: Mechanism of Action and Role in Clinical Practice.&amp;quot; Mayo Clinic Proceedings 83, no. 9 (2008): 1032-045. doi:10.4065/83.9.1032.&amp;lt;/ref&amp;gt;. In order to accomplish this, Fosamax inhibits [http://www.uniprot.org/uniprot/P14324 farnesyl pyrophosphate synthase] (FPPS), an enzyme which plays a role within the [https://en.wikipedia.org/wiki/Mevalonate_pathway mevalonic acid pathway], thereby reducing the production rate of isoprenoid compounds that are essential for post-translational modification of small guanosine triphosphate (GTP)-binding proteins (e.g. Rho, Rab and [https://pdb101.rcsb.org/motm/148 Ras])&amp;lt;ref&amp;gt;Luckman SP, Hughes DE, Coxon FP, Russell RGG, Rogers MJ (2005). Nitrogen-Containing Biphosphonates Inhibit the Mevalonate Pathway and Prevent Post-Translational Prenylation of GTP-Binding Proteins, Including Ras. Journal of Bone and Mineral Research. 20, 1265–74&amp;lt;/ref&amp;gt;. By inhibiting FPPS, Fosamax discourages the successive condensation of isopentenyl pyrophosphate with dimethylallyl pyrophosphate and geranyl pyrophosphate, which interferes with osteoclast function and survival &amp;lt;ref&amp;gt;Alendronic acid. (2005, June 13), from http://www.drugbank.ca/drugs/DB00630#bond-15126&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;Fisher, J. E., Rogers, M. J., Halasy, J. M., Luckman, S. P., Hughes, D. E., Masarachia, P. J., … Reszka, A. A. (1999). Alendronate mechanism of action: geranylgeraniol, an intermediate in the mevalonate pathway, prevents inhibition of osteoclast formation, bone resorption, and kinase activation in vitro. Proceedings of the National Academy of Sciences, 96(1), 133–138. doi:10.1073/pnas.96.1.133, from http://www.pnas.org/content/96/1/133.full.pdf&amp;lt;/ref&amp;gt;. [[Image:Screen Shot 2016-12-04 at 8.23.53 PM.png|thumb|right|400px|Figure 6. Relationship between bisphosphonates and osteoclasts at individual stages of cellular life.&amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;]]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Though the exact chemical mechanism by which alendronate inhibits FPPS remains unclear, nitrogen-containing bisphosphates (&amp;lt;scene name=&#039;74/745950/Ligand/2&#039;&amp;gt;N-BP&amp;lt;/scene&amp;gt;s) bind to the geranyl pyrophosphate/dimethylallyl (GPP/DMAPP) ligand binding pocket (Fig. 3) and alter the secondary structure of the enzyme&amp;lt;ref&amp;gt;Kavanagh KL, Guo K, Dunford JE, Wu X, Knapp S, and Ebetino FH (2006). The molecular mechanism of nitrogen-containing bisphosphonates as antiosteoporosis drugs. Proceedings of the National Academy of Sciences. 103, 7829–34&amp;lt;/ref&amp;gt;. Specifically, alendronate may bind to the FPPS allylic substrate-binding pocket by ligating the Magnesium ion center via phosphonate oxyanion nucleophilic attack&amp;lt;ref&amp;gt;Hosfield DJ, Zhang Y, Dougan DR, Broun A, Tari LW, Swanson RV (2003). Structural Basis for Bisphosphonate-mediated Inhibition of Isoprenoid Biosynthesis. Journal of Biological Chemistry. 2279, 8526–9&amp;lt;/ref&amp;gt;. Phosphonate groups are stabilized by a cluster of three Mg2+ ions via oxyanion-metal cation charge interactions, as well as three FPPS-conserved aspartate residues located within two alpha helical motifs (&amp;lt;scene name=&#039;74/745950/Aspartates/2&#039;&amp;gt;Asp-103, 107, and 243&amp;lt;/scene&amp;gt;) that form a &amp;lt;scene name=&#039;74/745950/Correct_ligand_binding_site/7&#039;&amp;gt;magnesium-bisphosphonate chelate&amp;lt;/scene&amp;gt; (Fig. 4)&amp;lt;ref&amp;gt;Tarshis L. C., Yan M., Poulter C. D., Sacchettini J. C. (1994) Biochemistry. 33, 10871–10877.&amp;lt;/ref&amp;gt;. N-BPs may bind to the GPP substrate-binding site because N-BPs resemble the structure of the enzyme’s natural substrates (GPP and DMAPP) and act as carbocation transition state analogs (Fig. 5). Interactions between N-BP and amino acid residues (&amp;lt;scene name=&#039;74/745950/Lys200_thr201/3&#039;&amp;gt;Thr-201 and Lys-200&amp;lt;/scene&amp;gt;) suggest that these inhibitors position nitrogen in the carbocation-binding site, then mimic the carbocation intermediate formed via substrate ionization &amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;. By acting as a transition state analog for isoprenoid biosynthesis, Fosamax effectively increases the activation energy of a regulatory/rate-determining step in the mevalonate pathway, subsequently reducing the concentration of product molecules that aid the continuous biodegradation of skeletal tissue.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== References ==&lt;br /&gt;
&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Contributors and Editors ==&lt;br /&gt;
&lt;br /&gt;
[[User:Alyssa Jewel D. Floro|Floro, Alyssa Jewel D.]] [[User:Justin Myles Kidd|Kidd, Justin M.]] [[User:Osna M. Samady|Samady, Osna M.]]&lt;/div&gt;</summary>
		<author><name>Justin Myles Kidd</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Fosamax_(alendronate_sodium)&amp;diff=2688499</id>
		<title>Fosamax (alendronate sodium)</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Fosamax_(alendronate_sodium)&amp;diff=2688499"/>
		<updated>2016-12-05T22:39:07Z</updated>

		<summary type="html">&lt;p&gt;Justin Myles Kidd: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;scene name=&#039;74/745950/Correct_ligand_binding_site/3&#039;&amp;gt;&amp;lt;/scene&amp;gt;&amp;lt;table style=&amp;quot;width:200px; border:1px solid black; float:right; &amp;quot;&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td colspan=&amp;quot;2&amp;quot;&amp;gt;&amp;lt;center&amp;gt; FOSAMAX &amp;lt;/center&amp;gt;&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td colspan=&amp;quot;2&amp;quot;&amp;gt;&amp;lt;center&amp;gt;[[Image:Fosamax.gif|thumb|center|200px|Figure 1. Fosamax prescription drug, tablet form.]]&amp;lt;/center&amp;gt;&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Formula:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;C4H13NO7P2&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Molar Mass:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;249.097 g/mol&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;INN:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Alendronic Acid&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;USAN:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Alendronate sodium&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;IUPAC:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;4-amino-1-hydroxybutylidene) bisphosphonic acid monosodium salt trihydrate&lt;br /&gt;
&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;/table&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Fosamax (Alendronate Sodium or Alendronic Acid) is a pharmaceutical drug administered as an antiresorptive therapy agent for osteodegenerative diseases such as [https://en.wikipedia.org/wiki/Osteoporosis Osteoporosis], [https://en.wikipedia.org/wiki/Paget&#039;s_disease_of_bone Paget&#039;s disease], and [https://en.wikipedia.org/wiki/Osteogenesis_imperfecta osteogenesis imperfecta]&amp;lt;ref&amp;gt;Gong Li, Altman Russ B, Klein Teri E . &amp;quot;Bisphosphonates pathway&amp;quot; Pharmacogenetics and genomics (2011). from https://www.pharmgkb.org/pathway/PA154423660&amp;lt;/ref&amp;gt;.&lt;br /&gt;
Functioning as a nitrogen-containing, second generation [https://en.wikipedia.org/wiki/Bisphosphonate bisphosphonate], Fosamax binds to [https://en.wikipedia.org/wiki/Hydroxylapatite hydroxyapatite] in bone and promotes [https://en.wikipedia.org/wiki/Apoptosis apoptosis] in [https://en.wikipedia.org/wiki/Osteoclast osteoclasts] (cells specialized in skeletal breakdown), thereby delaying the degradation of bone tissue. While incorporated in bone matrix, alendronate is not pharmacologically active, thus, it must be continuously administered to suppress osteoclasts on newly formed resorption surfaces &amp;lt;ref&amp;gt;Fosamax: Uses, Dosage &amp;amp; Side Effects - Drugs.com. (2016, November 3).Fosamax: Uses, Dosage &amp;amp; Side Effects - Drugs.com. Retrieved November 14, 2016, from https://www.drugs.com/fosamax.html&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
== History &amp;lt;ref&amp;gt;Fosamax (alendronate sodium). Fosamax New FDA Drug Approval | CenterWatch. Merck. Retrieved November 15, 2016, from http://www.centerwatch.com/drug-information/fda-approved-drugs/drug/26/fosamax-alendronate-sodium&amp;lt;/ref&amp;gt;==&lt;br /&gt;
Fosamax has been in use since September 29, 1995 after gaining [http://google2.fda.gov/search?q=fosamax&amp;amp;client=FDAgov&amp;amp;site=FDAgov&amp;amp;lr=&amp;amp;proxystylesheet=FDAgov&amp;amp;requiredfields=-archive%3AYes&amp;amp;output=xml_no_dtd&amp;amp;getfields=* Food and Drug Administration] (FDA) approval. The drug obtained FDA clearance based on data from five clinical trials, lasting two years, involving 1,827 postmenopausal women with osteoporosis in 16 different countries. The trials showed a significant increase in bone mineral density at the spine, hip, and other sites. Overall, the drug reduced the number of women with new spinal fractures by 48%, the total number of new spinal fractures by 63%, and reduced overall height loss by 35%. Today, the drug remains in circulation in caplet and liquid forms and attainable at most pharmaceutical distribution centers with an eligible prescription. &lt;br /&gt;
&lt;br /&gt;
== Side Effects &amp;lt;ref&amp;gt;Common Side Effects of Fosamax (Alendronate Sodium) Drug Center - RxList. (2015, August 26). RxList. Retrieved November 14, 2016, from  http://www.rxlist.com/fosamax-side-effects-drug-center.htm&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
Common side effects of Fosamax include gas, constipation, heartburn, diarrhea, bloating, nausea, vomiting, stomach pain, joint pain or swelling, swelling in your hands or feet, dizziness, headache, eye pain, back pain, or weakness.&lt;br /&gt;
Serious side effects of Fosamax include severe pain (joints, bone, muscle, jaw, back or heartburn), chest pain, difficulty swallowing, bloody stools, eye pain, skin blisters, and swelling of the face, tongue, or throat. &lt;br /&gt;
&lt;br /&gt;
== Structural Highlights &amp;lt;ref&amp;gt;Protein Data Bank in Europe: Bringing Structure to Biology, from http://www.ebi.ac.uk/pdbe/entry/pdb/2F89&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
As a bisphosphonate, Fosamax is a synthetic analog of [https://en.wikipedia.org/wiki/Pyrophosphate pyrophosphate], containing two phosphate groups on the central carbon. In its drug form, Fosamax includes a sodium bounded in place of a carboxyl hydrogen. In solution, oxyanions may form an ionic bond(s) with metal cations such as magnesium. The central carbon is also attached to a hydroxyl group (-OH) and a three-carbon chain [-(CH2)3] leading to an amino group (-NH2) (Fig. 2).&lt;br /&gt;
&amp;lt;StructureSection load=&#039;2f89&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;Crystal Structure of human FPPS in complex with a bisphosphonate.&#039; scene=&#039;&#039;&amp;gt; [[Image:Screen Shot 2016-12-04 at 3.21.51 PM.png|thumb|left|200px|Figure 2. Chemical structure of Fosamax (alendronate sodium).]] &lt;br /&gt;
[[Image:Screen Shot 2016-12-02 at 3.24.13 PM.png|thumb|left|400px|Figure 3. GPP/DMAPP ligand pocket of SPSS-alendronate complex indicated by yellow eclipse.]]&lt;br /&gt;
[[Image:Screen Shot 2016-12-02 at 3.33.04 PM.png|thumb|left|400px|Figure 4. Aspartate-Magnesium cation-phosphonate chelate within FPPS-alendronate complex. Pink sphere indicates Mg2+ ion; red indicates oxygen atom, yellow indicates phosphorous atom, blue (bond-line) indicates nitrogen, blue (ribbon) indicates alpha helix motif.]] [[Image:Screen Shot 2016-12-04 at 8.42.20 PM.png|thumb|left|500px|Figure 5. Comparison between the structure of the carbocation transition states of DMAPP and GPP to the nitrogen-containing bisphosphonate alendronate. Close similarity suggests that Fosamax acts as carbocation transition state analog of isoprenoid diphosphates &amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;.]]&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Mechanism of Action ==&lt;br /&gt;
Functioning as a nitrogen-containing, second generation bisphosphonate, Fosamax binds to hydroxyapatite in bone and promotes apoptosis in osteoclasts (cells specialized in skeletal breakdown) (Fig. 6), thus slowing the breakdown of bone&amp;lt;ref&amp;gt;Drake, Matthew T., Bart L. Clarke, and Sundeep Khosla. &amp;quot;Bisphosphonates: Mechanism of Action and Role in Clinical Practice.&amp;quot; Mayo Clinic Proceedings 83, no. 9 (2008): 1032-045. doi:10.4065/83.9.1032.&amp;lt;/ref&amp;gt;. In order to accomplish this, Fosamax inhibits [http://www.uniprot.org/uniprot/P14324 farnesyl pyrophosphate synthase] (FPPS), an enzyme which plays a role within the [https://en.wikipedia.org/wiki/Mevalonate_pathway mevalonic acid pathway], thereby reducing the production of isoprenoid compounds that are essential for post-translational modification of small guanosine triphosphate (GTP)-binding proteins (e.g. Rho, Rab and [https://pdb101.rcsb.org/motm/148 Ras])&amp;lt;ref&amp;gt;Luckman SP, Hughes DE, Coxon FP, Russell RGG, Rogers MJ (2005). Nitrogen-Containing Biphosphonates Inhibit the Mevalonate Pathway and Prevent Post-Translational Prenylation of GTP-Binding Proteins, Including Ras. Journal of Bone and Mineral Research. 20, 1265–74&amp;lt;/ref&amp;gt;. By inhibiting FPPS, Fosamax discourages the successive condensation of isopentenyl pyrophosphate with dimethylallyl pyrophosphate and geranyl pyrophosphate, which interferes with osteoclast function and survival &amp;lt;ref&amp;gt;Alendronic acid. (2005, June 13), from http://www.drugbank.ca/drugs/DB00630#bond-15126&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;Fisher, J. E., Rogers, M. J., Halasy, J. M., Luckman, S. P., Hughes, D. E., Masarachia, P. J., … Reszka, A. A. (1999). Alendronate mechanism of action: geranylgeraniol, an intermediate in the mevalonate pathway, prevents inhibition of osteoclast formation, bone resorption, and kinase activation in vitro. Proceedings of the National Academy of Sciences, 96(1), 133–138. doi:10.1073/pnas.96.1.133, from http://www.pnas.org/content/96/1/133.full.pdf&amp;lt;/ref&amp;gt;. [[Image:Screen Shot 2016-12-04 at 8.23.53 PM.png|thumb|right|400px|Figure 6. Relationship between bisphosphonates and osteoclasts at individual stages of cellular life.&amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;]]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Though the exact chemical mechanism by which alendronate inhibits FPPS remains unclear, nitrogen-containing bisphosphates (&amp;lt;scene name=&#039;74/745950/Ligand/2&#039;&amp;gt;N-BP&amp;lt;/scene&amp;gt;s) bind to the geranyl pyrophosphate/dimethylallyl (GPP/DMAPP) ligand binding pocket (Fig. 3) and alter the secondary structure of the enzyme&amp;lt;ref&amp;gt;Kavanagh KL, Guo K, Dunford JE, Wu X, Knapp S, and Ebetino FH (2006). The molecular mechanism of nitrogen-containing bisphosphonates as antiosteoporosis drugs. Proceedings of the National Academy of Sciences. 103, 7829–34&amp;lt;/ref&amp;gt;. Specifically, alendronate may bind to the FPPS allylic substrate-binding pocket by ligating the Magnesium ion center via phosphonate oxyanion nucleophilic attack&amp;lt;ref&amp;gt;Hosfield DJ, Zhang Y, Dougan DR, Broun A, Tari LW, Swanson RV (2003). Structural Basis for Bisphosphonate-mediated Inhibition of Isoprenoid Biosynthesis. Journal of Biological Chemistry. 2279, 8526–9&amp;lt;/ref&amp;gt;. Phosphonate groups are stabilized by a cluster of three Mg2+ ions via oxyanion-metal cation charge interactions, as well as three FPPS-conserved aspartate residues located within two alpha helical motifs (&amp;lt;scene name=&#039;74/745950/Aspartates/2&#039;&amp;gt;Asp-103, 107, and 243&amp;lt;/scene&amp;gt;) that form a &amp;lt;scene name=&#039;74/745950/Correct_ligand_binding_site/7&#039;&amp;gt;magnesium-bisphosphonate chelate&amp;lt;/scene&amp;gt; (Fig. 4)&amp;lt;ref&amp;gt;Tarshis L. C., Yan M., Poulter C. D., Sacchettini J. C. (1994) Biochemistry. 33, 10871–10877.&amp;lt;/ref&amp;gt;. N-BPs may bind to the GPP substrate-binding site because N-BPs resemble the structure of the enzyme’s natural substrates (GPP and DMAPP) and act as carbocation transition state analogs (Fig. 5). Interactions between N-BP and amino acid residues (&amp;lt;scene name=&#039;74/745950/Lys200_thr201/3&#039;&amp;gt;Thr-201 and Lys-200&amp;lt;/scene&amp;gt;) suggest that these inhibitors position nitrogen in the carbocation-binding site, then mimic the carbocation intermediate formed via substrate ionization &amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;. By acting as a transition state analog for isoprenoid biosynthesis, Fosamax effectively increases the activation energy of a regulatory/rate-determining step in the mevalonate pathway, subsequently reducing the concentration of product molecules that aid the continuous biodegradation of skeletal tissue.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== References ==&lt;br /&gt;
&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Contributors and Editors ==&lt;br /&gt;
&lt;br /&gt;
[[User:Alyssa Jewel D. Floro|Floro, Alyssa Jewel D.]] [[User:Justin Myles Kidd|Kidd, Justin M.]] [[User:Osna M. Samady|Samady, Osna M.]]&lt;/div&gt;</summary>
		<author><name>Justin Myles Kidd</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Fosamax_(alendronate_sodium)&amp;diff=2688490</id>
		<title>Fosamax (alendronate sodium)</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Fosamax_(alendronate_sodium)&amp;diff=2688490"/>
		<updated>2016-12-05T22:32:31Z</updated>

		<summary type="html">&lt;p&gt;Justin Myles Kidd: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;scene name=&#039;74/745950/Correct_ligand_binding_site/3&#039;&amp;gt;&amp;lt;/scene&amp;gt;&amp;lt;table style=&amp;quot;width:200px; border:1px solid black; float:right; &amp;quot;&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td colspan=&amp;quot;2&amp;quot;&amp;gt;&amp;lt;center&amp;gt; FOSAMAX &amp;lt;/center&amp;gt;&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td colspan=&amp;quot;2&amp;quot;&amp;gt;&amp;lt;center&amp;gt;[[Image:Fosamax.gif|thumb|center|200px|Figure 1. Fosamax prescription drug, tablet form.]]&amp;lt;/center&amp;gt;&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Formula:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;C4H13NO7P2&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Molar Mass:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;249.097 g/mol&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;INN:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Alendronic Acid&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;USAN:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Alendronate sodium&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;IUPAC:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;4-amino-1-hydroxybutylidene) bisphosphonic acid monosodium salt trihydrate&lt;br /&gt;
&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;/table&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Fosamax (Alendronate Sodium or Alendronic Acid) is a pharmaceutical drug administered as an antiresorptive therapy agent for osteodegenerative diseases such as [https://en.wikipedia.org/wiki/Osteoporosis Osteoporosis], [https://en.wikipedia.org/wiki/Paget&#039;s_disease_of_bone Paget&#039;s disease], and [https://en.wikipedia.org/wiki/Osteogenesis_imperfecta osteogenesis imperfecta]&amp;lt;ref&amp;gt;Gong Li, Altman Russ B, Klein Teri E . &amp;quot;Bisphosphonates pathway&amp;quot; Pharmacogenetics and genomics (2011). from https://www.pharmgkb.org/pathway/PA154423660&amp;lt;/ref&amp;gt;.&lt;br /&gt;
Functioning as a nitrogen-containing, second generation [https://en.wikipedia.org/wiki/Bisphosphonate bisphosphonate], Fosamax binds to [https://en.wikipedia.org/wiki/Hydroxylapatite hydroxyapatite] in bone and promotes [https://en.wikipedia.org/wiki/Apoptosis apoptosis] in [https://en.wikipedia.org/wiki/Osteoclast osteoclasts] (cells specialized in skeletal breakdown), thereby delaying the degradation of bone tissue. While incorporated in bone matrix, alendronate is not pharmacologically active, thus, it must be continuously administered to suppress osteoclasts on newly formed resorption surfaces &amp;lt;ref&amp;gt;Fosamax: Uses, Dosage &amp;amp; Side Effects - Drugs.com. (2016, November 3).Fosamax: Uses, Dosage &amp;amp; Side Effects - Drugs.com. Retrieved November 14, 2016, from https://www.drugs.com/fosamax.html&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
== History &amp;lt;ref&amp;gt;Fosamax (alendronate sodium). Fosamax New FDA Drug Approval | CenterWatch. Merck. Retrieved November 15, 2016, from http://www.centerwatch.com/drug-information/fda-approved-drugs/drug/26/fosamax-alendronate-sodium&amp;lt;/ref&amp;gt;==&lt;br /&gt;
Fosamax has been in use since September 29, 1995 after gaining [http://google2.fda.gov/search?q=fosamax&amp;amp;client=FDAgov&amp;amp;site=FDAgov&amp;amp;lr=&amp;amp;proxystylesheet=FDAgov&amp;amp;requiredfields=-archive%3AYes&amp;amp;output=xml_no_dtd&amp;amp;getfields=* Food and Drug Administration] (FDA) approval. The drug obtained FDA clearance based on data from five clinical trials, lasting two years, involving 1,827 postmenopausal women with osteoporosis in 16 different countries. The trials showed a significant increase in bone mineral density at the spine, hip, and other sites. Overall, the drug reduced the number of women with new spinal fractures by 48%, the total number of new spinal fractures by 63%, and reduced overall height loss by 35%. Today, the drug remains in circulation in caplet and liquid forms and attainable at most pharmaceutical distribution centers with an eligible prescription. &lt;br /&gt;
&lt;br /&gt;
== Side Effects &amp;lt;ref&amp;gt;Common Side Effects of Fosamax (Alendronate Sodium) Drug Center - RxList. (2015, August 26). RxList. Retrieved November 14, 2016, from  http://www.rxlist.com/fosamax-side-effects-drug-center.htm&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
Common side effects of Fosamax include gas, constipation, heartburn, diarrhea, bloating, nausea, vomiting, stomach pain, joint pain or swelling, swelling in your hands or feet, dizziness, headache, eye pain, back pain, or weakness.&lt;br /&gt;
Serious side effects of Fosamax include severe pain (joints, bone, muscle, jaw, back or heartburn), chest pain, difficulty swallowing, bloody stools, eye pain, skin blisters, and swelling of the face, tongue, or throat. &lt;br /&gt;
&lt;br /&gt;
== Structural Highlights &amp;lt;ref&amp;gt;Protein Data Bank in Europe: Bringing Structure to Biology, from http://www.ebi.ac.uk/pdbe/entry/pdb/2F89&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
As a bisphosphonate, Fosamax is a synthetic analog of [https://en.wikipedia.org/wiki/Pyrophosphate pyrophosphate], containing two phosphate groups on the central carbon. In its drug form, Fosamax includes a sodium bounded in place of a carboxyl hydrogen. In solution, oxyanions may form an ionic bond(s) with metal cations such as magnesium. The central carbon is also attached to a hydroxyl group (-OH) and a three-carbon chain [-(CH2)3] leading to an amino group (-NH2) (Fig. 2).&lt;br /&gt;
&amp;lt;StructureSection load=&#039;2f89&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;Crystal Structure of human FPPS in complex with a bisphosphonate.&#039; scene=&#039;&#039;&amp;gt; [[Image:Screen Shot 2016-12-04 at 3.21.51 PM.png|thumb|left|200px|Figure 2. Chemical structure of Fosamax (alendronate sodium).]] &lt;br /&gt;
[[Image:Screen Shot 2016-12-02 at 3.24.13 PM.png|thumb|left|400px|Figure 3. GPP/DMAPP ligand pocket of SPSS-alendronate complex indicated by yellow eclipse.]]&lt;br /&gt;
[[Image:Screen Shot 2016-12-02 at 3.33.04 PM.png|thumb|left|400px|Figure 4. Aspartate-Magnesium cation-phosphonate chelate within FPPS-alendronate complex. Pink sphere indicates Mg2+ ion; red indicates oxygen atom, yellow indicates phosphorous atom, blue (bond-line) indicates nitrogen, blue (ribbon) indicates alpha helix motif.]] [[Image:Screen Shot 2016-12-04 at 8.42.20 PM.png|thumb|left|500px|Figure 5. Comparison between the structure of the carbocation transition states of DMAPP and GPP to the nitrogen-containing bisphosphonate alendronate. Close similarity suggests that Fosamax acts as carbocation transition state analog of isoprenoid diphosphates &amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;.]]&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Mechanism of Action ==&lt;br /&gt;
Functioning as a nitrogen-containing, second generation bisphosphonate, Fosamax binds to hydroxyapatite in bone and promotes apoptosis in osteoclasts (cells specialized in skeletal breakdown) (Fig. 6), thus slowing the breakdown of bone&amp;lt;ref&amp;gt;Drake, Matthew T., Bart L. Clarke, and Sundeep Khosla. &amp;quot;Bisphosphonates: Mechanism of Action and Role in Clinical Practice.&amp;quot; Mayo Clinic Proceedings 83, no. 9 (2008): 1032-045. doi:10.4065/83.9.1032.&amp;lt;/ref&amp;gt;. In order to accomplish this, Fosamax inhibits [http://www.uniprot.org/uniprot/P14324 farnesyl pyrophosphate synthase] (FPPS), one of the enzymes found in the [https://en.wikipedia.org/wiki/Mevalonate_pathway mevalonic acid pathway], thereby reducing the production of isoprenoid compounds that are essential for post-translational modification of small guanosine triphosphate (GTP)-binding proteins (e.g. Rho, Rab and [https://pdb101.rcsb.org/motm/148 Ras])&amp;lt;ref&amp;gt;Luckman SP, Hughes DE, Coxon FP, Russell RGG, Rogers MJ (2005). Nitrogen-Containing Biphosphonates Inhibit the Mevalonate Pathway and Prevent Post-Translational Prenylation of GTP-Binding Proteins, Including Ras. Journal of Bone and Mineral Research. 20, 1265–74&amp;lt;/ref&amp;gt;. By inhibiting FPPS, Fosamax discourages the successive condensation of isopentenyl pyrophosphate with dimethylallyl pyrophosphate and geranyl pyrophosphate, which interferes with osteoclast function and survival &amp;lt;ref&amp;gt;Alendronic acid. (2005, June 13), from http://www.drugbank.ca/drugs/DB00630#bond-15126&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;Fisher, J. E., Rogers, M. J., Halasy, J. M., Luckman, S. P., Hughes, D. E., Masarachia, P. J., … Reszka, A. A. (1999). Alendronate mechanism of action: geranylgeraniol, an intermediate in the mevalonate pathway, prevents inhibition of osteoclast formation, bone resorption, and kinase activation in vitro. Proceedings of the National Academy of Sciences, 96(1), 133–138. doi:10.1073/pnas.96.1.133, from http://www.pnas.org/content/96/1/133.full.pdf&amp;lt;/ref&amp;gt;. [[Image:Screen Shot 2016-12-04 at 8.23.53 PM.png|thumb|right|400px|Figure 6. Relationship between bisphosphonates and osteoclasts at individual stages of cellular life.&amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;]]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Though the exact chemical mechanism by which alendronate inhibits FPPS remains unclear, nitrogen-containing bisphosphates (&amp;lt;scene name=&#039;74/745950/Ligand/2&#039;&amp;gt;N-BP&amp;lt;/scene&amp;gt;s) bind to the geranyl pyrophosphate/dimethylallyl (GPP/DMAPP) ligand binding pocket (Fig. 3) and alter the secondary structure of the enzyme&amp;lt;ref&amp;gt;Kavanagh KL, Guo K, Dunford JE, Wu X, Knapp S, and Ebetino FH (2006). The molecular mechanism of nitrogen-containing bisphosphonates as antiosteoporosis drugs. Proceedings of the National Academy of Sciences. 103, 7829–34&amp;lt;/ref&amp;gt;. Specifically, alendronate may bind to the FPPS allylic substrate-binding pocket by ligating the Magnesium ion center via phosphonate oxyanion nucleophilic attack&amp;lt;ref&amp;gt;Hosfield DJ, Zhang Y, Dougan DR, Broun A, Tari LW, Swanson RV (2003). Structural Basis for Bisphosphonate-mediated Inhibition of Isoprenoid Biosynthesis. Journal of Biological Chemistry. 2279, 8526–9&amp;lt;/ref&amp;gt;. Phosphonate groups are stabilized by a cluster of three Mg2+ ions via oxyanion-metal cation charge interactions, as well as three FPPS-conserved aspartate residues located within two alpha helical motifs (&amp;lt;scene name=&#039;74/745950/Aspartates/2&#039;&amp;gt;Asp-103, 107, and 243&amp;lt;/scene&amp;gt;) that form a &amp;lt;scene name=&#039;74/745950/Correct_ligand_binding_site/7&#039;&amp;gt;magnesium-bisphosphonate chelate&amp;lt;/scene&amp;gt; (Fig. 4)&amp;lt;ref&amp;gt;Tarshis L. C., Yan M., Poulter C. D., Sacchettini J. C. (1994) Biochemistry. 33, 10871–10877.&amp;lt;/ref&amp;gt;. N-BPs may bind to the GPP substrate-binding site because N-BPs resemble the structure of the enzyme’s natural substrates (GPP and DMAPP) and act as carbocation transition state analogs (Fig. 5). Interactions between N-BP and amino acid residues (&amp;lt;scene name=&#039;74/745950/Lys200_thr201/3&#039;&amp;gt;Thr-201 and Lys-200&amp;lt;/scene&amp;gt;) suggest that these inhibitors position nitrogen in the carbocation-binding site, then mimic the carbocation intermediate formed via substrate ionization &amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;. By acting as a transition state analog for isoprenoid biosynthesis, Fosamax effectively increases the activation energy of a regulatory/rate-determining step in the mevalonate pathway, subsequently reducing the concentration of product molecules that aid the continuous biodegradation of skeletal tissue.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== References ==&lt;br /&gt;
&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Contributors and Editors ==&lt;br /&gt;
&lt;br /&gt;
[[User:Alyssa Jewel D. Floro|Floro, Alyssa Jewel D.]] [[User:Justin Myles Kidd|Kidd, Justin M.]] [[User:Osna M. Samady|Samady, Osna M.]]&lt;/div&gt;</summary>
		<author><name>Justin Myles Kidd</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Fosamax_(alendronate_sodium)&amp;diff=2688484</id>
		<title>Fosamax (alendronate sodium)</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Fosamax_(alendronate_sodium)&amp;diff=2688484"/>
		<updated>2016-12-05T22:26:37Z</updated>

		<summary type="html">&lt;p&gt;Justin Myles Kidd: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;scene name=&#039;74/745950/Correct_ligand_binding_site/3&#039;&amp;gt;&amp;lt;/scene&amp;gt;&amp;lt;table style=&amp;quot;width:200px; border:1px solid black; float:right; &amp;quot;&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td colspan=&amp;quot;2&amp;quot;&amp;gt;&amp;lt;center&amp;gt; FOSAMAX &amp;lt;/center&amp;gt;&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td colspan=&amp;quot;2&amp;quot;&amp;gt;&amp;lt;center&amp;gt;[[Image:Fosamax.gif|thumb|center|200px|Figure 1. Fosamax prescription drug, tablet form.]]&amp;lt;/center&amp;gt;&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Formula:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;C4H13NO7P2&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Molar Mass:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;249.097 g/mol&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;INN:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Alendronic Acid&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;USAN:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Alendronate sodium&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;IUPAC:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;4-amino-1-hydroxybutylidene) bisphosphonic acid monosodium salt trihydrate&lt;br /&gt;
&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;/table&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Fosamax (Alendronate Sodium or Alendronic Acid) is a pharmaceutical drug administered as an antiresorptive therapy agent for osteodegenerative diseases such as [https://en.wikipedia.org/wiki/Osteoporosis Osteoporosis], [https://en.wikipedia.org/wiki/Paget&#039;s_disease_of_bone Paget&#039;s disease], and [https://en.wikipedia.org/wiki/Osteogenesis_imperfecta osteogenesis imperfecta]&amp;lt;ref&amp;gt;Gong Li, Altman Russ B, Klein Teri E . &amp;quot;Bisphosphonates pathway&amp;quot; Pharmacogenetics and genomics (2011). from https://www.pharmgkb.org/pathway/PA154423660&amp;lt;/ref&amp;gt;.&lt;br /&gt;
Functioning as a nitrogen-containing, second generation [https://en.wikipedia.org/wiki/Bisphosphonate bisphosphonate], Fosamax binds to [https://en.wikipedia.org/wiki/Hydroxylapatite hydroxyapatite] in bone and promotes [https://en.wikipedia.org/wiki/Apoptosis apoptosis] in [https://en.wikipedia.org/wiki/Osteoclast osteoclasts] (cells specialized in skeletal breakdown), thereby delaying the degradation of bone tissue. While incorporated in bone matrix, alendronate is not pharmacologically active, thus, it must be continuously administered to suppress osteoclasts on newly formed resorption surfaces &amp;lt;ref&amp;gt;Fosamax: Uses, Dosage &amp;amp; Side Effects - Drugs.com. (2016, November 3).Fosamax: Uses, Dosage &amp;amp; Side Effects - Drugs.com. Retrieved November 14, 2016, from https://www.drugs.com/fosamax.html&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
== History &amp;lt;ref&amp;gt;Fosamax (alendronate sodium). Fosamax New FDA Drug Approval | CenterWatch. Merck. Retrieved November 15, 2016, from http://www.centerwatch.com/drug-information/fda-approved-drugs/drug/26/fosamax-alendronate-sodium&amp;lt;/ref&amp;gt;==&lt;br /&gt;
Fosamax has been in use since September 29, 1995 after gaining [http://google2.fda.gov/search?q=fosamax&amp;amp;client=FDAgov&amp;amp;site=FDAgov&amp;amp;lr=&amp;amp;proxystylesheet=FDAgov&amp;amp;requiredfields=-archive%3AYes&amp;amp;output=xml_no_dtd&amp;amp;getfields=* Food and Drug Administration] (FDA) approval. The drug obtained FDA clearance based on data from five clinical trials, lasting two years, involving 1,827 postmenopausal women with osteoporosis in 16 different countries. The trials showed a significant increase in bone mineral density at the spine, hip, and other sites. Overall, the drug reduced the number of women with new spinal fractures by 48%, the total number of new spinal fractures by 63%, and reduced overall height loss by 35%. Today, the drug remains in circulation in caplet and liquid forms and attainable at most pharmaceutical distribution centers with an eligible prescription. &lt;br /&gt;
&lt;br /&gt;
== Side Effects &amp;lt;ref&amp;gt;Common Side Effects of Fosamax (Alendronate Sodium) Drug Center - RxList. (2015, August 26). RxList. Retrieved November 14, 2016, from  http://www.rxlist.com/fosamax-side-effects-drug-center.htm&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
Common side effects of Fosamax include gas, constipation, heartburn, diarrhea, bloating, nausea, vomiting, stomach pain, joint pain or swelling, swelling in your hands or feet, dizziness, headache, eye pain, back pain, or weakness.&lt;br /&gt;
Serious side effects of Fosamax include severe pain (joints, bone, muscle, jaw, back or heartburn), chest pain, difficulty swallowing, bloody stools, eye pain, skin blisters, and swelling of the face, tongue, or throat. &lt;br /&gt;
&lt;br /&gt;
== Structural Highlights &amp;lt;ref&amp;gt;Protein Data Bank in Europe: Bringing Structure to Biology, from http://www.ebi.ac.uk/pdbe/entry/pdb/2F89&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
As a bisphosphonate, Fosamax is a synthetic analog of [https://en.wikipedia.org/wiki/Pyrophosphate pyrophosphate], containing a protonated phosphorus oxyanions. In its drug form, sodium is bound in place of a carboxyl hydrogen. When in solution, Fosamax may form an ionic bond(s) with other metal cations such as magnesium. The central carbon is also attached to an -OH as well as a three-carbon chain leading up to an amino group (Fig. 2).&lt;br /&gt;
&amp;lt;StructureSection load=&#039;2f89&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;Crystal Structure of human FPPS in complex with a bisphosphonate.&#039; scene=&#039;&#039;&amp;gt; [[Image:Screen Shot 2016-12-04 at 3.21.51 PM.png|thumb|left|200px|Figure 2. Chemical structure of Fosamax (alendronate sodium).]] &lt;br /&gt;
[[Image:Screen Shot 2016-12-02 at 3.24.13 PM.png|thumb|left|400px|Figure 3. GPP/DMAPP ligand pocket of SPSS-alendronate complex indicated by yellow eclipse.]]&lt;br /&gt;
[[Image:Screen Shot 2016-12-02 at 3.33.04 PM.png|thumb|left|400px|Figure 4. Aspartate-Magnesium cation-phosphonate chelate within FPPS-alendronate complex. Pink sphere indicates Mg2+ ion; red indicates oxygen atom, yellow indicates phosphorous atom, blue (bond-line) indicates nitrogen, blue (ribbon) indicates alpha helix motif.]] [[Image:Screen Shot 2016-12-04 at 8.42.20 PM.png|thumb|left|500px|Figure 5. Comparison between the structure of the carbocation transition states of DMAPP and GPP to the nitrogen-containing bisphosphonate alendronate. Close similarity suggests that Fosamax acts as carbocation transition state analog of isoprenoid diphosphates &amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;.]]&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Mechanism of Action ==&lt;br /&gt;
Functioning as a nitrogen-containing, second generation bisphosphonate, Fosamax binds to hydroxyapatite in bone and promotes apoptosis in osteoclasts (cells specialized in skeletal breakdown) (Fig. 6), thus slowing the breakdown of bone&amp;lt;ref&amp;gt;Drake, Matthew T., Bart L. Clarke, and Sundeep Khosla. &amp;quot;Bisphosphonates: Mechanism of Action and Role in Clinical Practice.&amp;quot; Mayo Clinic Proceedings 83, no. 9 (2008): 1032-045. doi:10.4065/83.9.1032.&amp;lt;/ref&amp;gt;. In order to accomplish this, Fosamax inhibits [http://www.uniprot.org/uniprot/P14324 farnesyl pyrophosphate synthase] (FPPS), one of the enzymes found in the [https://en.wikipedia.org/wiki/Mevalonate_pathway mevalonic acid pathway], thereby reducing the production of isoprenoid compounds that are essential for post-translational modification of small guanosine triphosphate (GTP)-binding proteins (e.g. Rho, Rab and [https://pdb101.rcsb.org/motm/148 Ras])&amp;lt;ref&amp;gt;Luckman SP, Hughes DE, Coxon FP, Russell RGG, Rogers MJ (2005). Nitrogen-Containing Biphosphonates Inhibit the Mevalonate Pathway and Prevent Post-Translational Prenylation of GTP-Binding Proteins, Including Ras. Journal of Bone and Mineral Research. 20, 1265–74&amp;lt;/ref&amp;gt;. By inhibiting FPPS, Fosamax discourages the successive condensation of isopentenyl pyrophosphate with dimethylallyl pyrophosphate and geranyl pyrophosphate, which interferes with osteoclast function and survival &amp;lt;ref&amp;gt;Alendronic acid. (2005, June 13), from http://www.drugbank.ca/drugs/DB00630#bond-15126&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;Fisher, J. E., Rogers, M. J., Halasy, J. M., Luckman, S. P., Hughes, D. E., Masarachia, P. J., … Reszka, A. A. (1999). Alendronate mechanism of action: geranylgeraniol, an intermediate in the mevalonate pathway, prevents inhibition of osteoclast formation, bone resorption, and kinase activation in vitro. Proceedings of the National Academy of Sciences, 96(1), 133–138. doi:10.1073/pnas.96.1.133, from http://www.pnas.org/content/96/1/133.full.pdf&amp;lt;/ref&amp;gt;. [[Image:Screen Shot 2016-12-04 at 8.23.53 PM.png|thumb|right|400px|Figure 6. Relationship between bisphosphonates and osteoclasts at individual stages of cellular life.&amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;]]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Though the exact chemical mechanism by which alendronate inhibits FPPS remains unclear, nitrogen-containing bisphosphates (&amp;lt;scene name=&#039;74/745950/Ligand/2&#039;&amp;gt;N-BP&amp;lt;/scene&amp;gt;s) bind to the geranyl pyrophosphate/dimethylallyl (GPP/DMAPP) ligand binding pocket (Fig. 3) and alter the secondary structure of the enzyme&amp;lt;ref&amp;gt;Kavanagh KL, Guo K, Dunford JE, Wu X, Knapp S, and Ebetino FH (2006). The molecular mechanism of nitrogen-containing bisphosphonates as antiosteoporosis drugs. Proceedings of the National Academy of Sciences. 103, 7829–34&amp;lt;/ref&amp;gt;. Specifically, alendronate may bind to the FPPS allylic substrate-binding pocket by ligating the Magnesium ion center via phosphonate oxyanion nucleophilic attack&amp;lt;ref&amp;gt;Hosfield DJ, Zhang Y, Dougan DR, Broun A, Tari LW, Swanson RV (2003). Structural Basis for Bisphosphonate-mediated Inhibition of Isoprenoid Biosynthesis. Journal of Biological Chemistry. 2279, 8526–9&amp;lt;/ref&amp;gt;. Phosphonate groups are stabilized by a cluster of three Mg2+ ions via oxyanion-metal cation charge interactions, as well as three FPPS-conserved aspartate residues located within two alpha helical motifs (&amp;lt;scene name=&#039;74/745950/Aspartates/2&#039;&amp;gt;Asp-103, 107, and 243&amp;lt;/scene&amp;gt;) that form a &amp;lt;scene name=&#039;74/745950/Correct_ligand_binding_site/7&#039;&amp;gt;magnesium-bisphosphonate chelate&amp;lt;/scene&amp;gt; (Fig. 4)&amp;lt;ref&amp;gt;Tarshis L. C., Yan M., Poulter C. D., Sacchettini J. C. (1994) Biochemistry. 33, 10871–10877.&amp;lt;/ref&amp;gt;. N-BPs may bind to the GPP substrate-binding site because N-BPs resemble the structure of the enzyme’s natural substrates (GPP and DMAPP) and act as carbocation transition state analogs (Fig. 5). Interactions between N-BP and amino acid residues (&amp;lt;scene name=&#039;74/745950/Lys200_thr201/3&#039;&amp;gt;Thr-201 and Lys-200&amp;lt;/scene&amp;gt;) suggest that these inhibitors position nitrogen in the carbocation-binding site, then mimic the carbocation intermediate formed via substrate ionization &amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;. By acting as a transition state analog for isoprenoid biosynthesis, Fosamax effectively increases the activation energy of a regulatory/rate-determining step in the mevalonate pathway, subsequently reducing the concentration of product molecules that aid the continuous biodegradation of skeletal tissue.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== References ==&lt;br /&gt;
&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Contributors and Editors ==&lt;br /&gt;
&lt;br /&gt;
[[User:Alyssa Jewel D. Floro|Floro, Alyssa Jewel D.]] [[User:Justin Myles Kidd|Kidd, Justin M.]] [[User:Osna M. Samady|Samady, Osna M.]]&lt;/div&gt;</summary>
		<author><name>Justin Myles Kidd</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Fosamax_(alendronate_sodium)&amp;diff=2688479</id>
		<title>Fosamax (alendronate sodium)</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Fosamax_(alendronate_sodium)&amp;diff=2688479"/>
		<updated>2016-12-05T22:22:37Z</updated>

		<summary type="html">&lt;p&gt;Justin Myles Kidd: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;scene name=&#039;74/745950/Correct_ligand_binding_site/3&#039;&amp;gt;&amp;lt;/scene&amp;gt;&amp;lt;table style=&amp;quot;width:200px; border:1px solid black; float:right; &amp;quot;&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td colspan=&amp;quot;2&amp;quot;&amp;gt;&amp;lt;center&amp;gt; FOSAMAX &amp;lt;/center&amp;gt;&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td colspan=&amp;quot;2&amp;quot;&amp;gt;&amp;lt;center&amp;gt;[[Image:Fosamax.gif|thumb|center|200px|Figure 1. Fosamax prescription drug, tablet form.]]&amp;lt;/center&amp;gt;&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Formula:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;C4H13NO7P2&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Molar Mass:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;249.097 g/mol&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;INN:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Alendronic Acid&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;USAN:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Alendronate sodium&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;IUPAC:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;4-amino-1-hydroxybutylidene) bisphosphonic acid monosodium salt trihydrate&lt;br /&gt;
&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;/table&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Fosamax (Alendronate Sodium or Alendronic Acid) is a pharmaceutical drug administered as an antiresorptive therapy agent for osteodegenerative diseases such as [https://en.wikipedia.org/wiki/Osteoporosis Osteoporosis], [https://en.wikipedia.org/wiki/Paget&#039;s_disease_of_bone Paget&#039;s disease], and [https://en.wikipedia.org/wiki/Osteogenesis_imperfecta osteogenesis imperfecta]&amp;lt;ref&amp;gt;Gong Li, Altman Russ B, Klein Teri E . &amp;quot;Bisphosphonates pathway&amp;quot; Pharmacogenetics and genomics (2011). from https://www.pharmgkb.org/pathway/PA154423660&amp;lt;/ref&amp;gt;.&lt;br /&gt;
Functioning as a nitrogen-containing, second generation [https://en.wikipedia.org/wiki/Bisphosphonate bisphosphonate], Fosamax binds to [https://en.wikipedia.org/wiki/Hydroxylapatite hydroxyapatite] in bone and promotes [https://en.wikipedia.org/wiki/Apoptosis apoptosis] in [https://en.wikipedia.org/wiki/Osteoclast osteoclasts] (cells specialized in skeletal breakdown), thereby delaying the degradation of bone tissue. While incorporated in bone matrix, alendronate is not pharmacologically active, thus, it must be continuously administered to suppress osteoclasts on newly formed resorption surfaces &amp;lt;ref&amp;gt;Fosamax: Uses, Dosage &amp;amp; Side Effects - Drugs.com. (2016, November 3).Fosamax: Uses, Dosage &amp;amp; Side Effects - Drugs.com. Retrieved November 14, 2016, from https://www.drugs.com/fosamax.html&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
== History &amp;lt;ref&amp;gt;Fosamax (alendronate sodium). Fosamax New FDA Drug Approval | CenterWatch. Merck. Retrieved November 15, 2016, from http://www.centerwatch.com/drug-information/fda-approved-drugs/drug/26/fosamax-alendronate-sodium&amp;lt;/ref&amp;gt;==&lt;br /&gt;
Fosamax has been in use since September 29, 1995 after gaining [http://google2.fda.gov/search?q=fosamax&amp;amp;client=FDAgov&amp;amp;site=FDAgov&amp;amp;lr=&amp;amp;proxystylesheet=FDAgov&amp;amp;requiredfields=-archive%3AYes&amp;amp;output=xml_no_dtd&amp;amp;getfields=* Food and Drug Administration] (FDA) approval. The drug obtained FDA clearance based on data from five clinical trials, lasting two years, involving 1,827 postmenopausal women with osteoporosis in 16 different countries. The trials showed a significant increase in bone mineral density at the spine, hip, and other sites. Overall, the drug reduced the number of women with new spinal fractures by 48%, the total number of new spinal fractures by 63%, and reduced overall height loss by 35%. Today, the drug remains in circulation in caplet and liquid forms and attainable at most pharmaceutical distribution centers with an eligible prescription. &lt;br /&gt;
&lt;br /&gt;
== Side Effects &amp;lt;ref&amp;gt;Common Side Effects of Fosamax (Alendronate Sodium) Drug Center - RxList. (2015, August 26). RxList. Retrieved November 14, 2016, from  http://www.rxlist.com/fosamax-side-effects-drug-center.htm&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
Common side effects of Fosamax include gas, constipation, heartburn, diarrhea, bloating, nausea, vomiting, stomach pain, joint pain or swelling, swelling in your hands or feet, dizziness, headache, eye pain, back pain, or weakness.&lt;br /&gt;
Serious side effects of Fosamax include severe pain (joints, bone, muscle, jaw, back or heartburn), chest pain, difficulty swallowing, bloody stools, eye pain, skin blisters, and swelling of the face, tongue, or throat. &lt;br /&gt;
&lt;br /&gt;
== Structural Highlights &amp;lt;ref&amp;gt;Protein Data Bank in Europe: Bringing Structure to Biology, from http://www.ebi.ac.uk/pdbe/entry/pdb/2F89&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
As a bisphosphonate, Fosamax is a synthetic analog of [https://en.wikipedia.org/wiki/Pyrophosphate pyrophosphate], containing two protonated phosphorus oxyanions, each attached to a hydroxyl group. In its drug form, sodium is bound in place of a carboxyl hydrogen. When in solution, Fosamax may form an ionic bond(s) with other metal cations such as magnesium. The central carbon is also attached to an -OH as well as a three-carbon chain leading up to an amino group (Fig. 2).&lt;br /&gt;
&amp;lt;StructureSection load=&#039;2f89&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;Crystal Structure of human FPPS in complex with a bisphosphonate.&#039; scene=&#039;&#039;&amp;gt; [[Image:Screen Shot 2016-12-04 at 3.21.51 PM.png|thumb|left|200px|Figure 2. Chemical structure of Fosamax (alendronate sodium).]] &lt;br /&gt;
[[Image:Screen Shot 2016-12-02 at 3.24.13 PM.png|thumb|left|400px|Figure 3. GPP/DMAPP ligand pocket of SPSS-alendronate complex indicated by yellow eclipse.]]&lt;br /&gt;
[[Image:Screen Shot 2016-12-02 at 3.33.04 PM.png|thumb|left|400px|Figure 4. Aspartate-Magnesium cation-phosphonate chelate within FPPS-alendronate complex. Pink sphere indicates Mg2+ ion; red indicates oxygen atom, yellow indicates phosphorous atom, blue (bond-line) indicates nitrogen, blue (ribbon) indicates alpha helix motif.]] [[Image:Screen Shot 2016-12-04 at 8.42.20 PM.png|thumb|left|500px|Figure 5. Comparison between the structure of the carbocation transition states of DMAPP and GPP to the nitrogen-containing bisphosphonate alendronate. Close similarity suggests that Fosamax acts as carbocation transition state analog of isoprenoid diphosphates &amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;.]]&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Mechanism of Action ==&lt;br /&gt;
Functioning as a nitrogen-containing, second generation bisphosphonate, Fosamax binds to hydroxyapatite in bone and promotes apoptosis in osteoclasts (cells specialized in skeletal breakdown) (Fig. 6), thus slowing the breakdown of bone&amp;lt;ref&amp;gt;Drake, Matthew T., Bart L. Clarke, and Sundeep Khosla. &amp;quot;Bisphosphonates: Mechanism of Action and Role in Clinical Practice.&amp;quot; Mayo Clinic Proceedings 83, no. 9 (2008): 1032-045. doi:10.4065/83.9.1032.&amp;lt;/ref&amp;gt;. In order to accomplish this, Fosamax inhibits [http://www.uniprot.org/uniprot/P14324 farnesyl pyrophosphate synthase] (FPPS), one of the enzymes found in the [https://en.wikipedia.org/wiki/Mevalonate_pathway mevalonic acid pathway], thereby reducing the production of isoprenoid compounds that are essential for post-translational modification of small guanosine triphosphate (GTP)-binding proteins (e.g. Rho, Rab and [https://pdb101.rcsb.org/motm/148 Ras])&amp;lt;ref&amp;gt;Luckman SP, Hughes DE, Coxon FP, Russell RGG, Rogers MJ (2005). Nitrogen-Containing Biphosphonates Inhibit the Mevalonate Pathway and Prevent Post-Translational Prenylation of GTP-Binding Proteins, Including Ras. Journal of Bone and Mineral Research. 20, 1265–74&amp;lt;/ref&amp;gt;. By inhibiting FPPS, Fosamax discourages the successive condensation of isopentenyl pyrophosphate with dimethylallyl pyrophosphate and geranyl pyrophosphate, which interferes with osteoclast function and survival &amp;lt;ref&amp;gt;Alendronic acid. (2005, June 13), from http://www.drugbank.ca/drugs/DB00630#bond-15126&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;Fisher, J. E., Rogers, M. J., Halasy, J. M., Luckman, S. P., Hughes, D. E., Masarachia, P. J., … Reszka, A. A. (1999). Alendronate mechanism of action: geranylgeraniol, an intermediate in the mevalonate pathway, prevents inhibition of osteoclast formation, bone resorption, and kinase activation in vitro. Proceedings of the National Academy of Sciences, 96(1), 133–138. doi:10.1073/pnas.96.1.133, from http://www.pnas.org/content/96/1/133.full.pdf&amp;lt;/ref&amp;gt;. [[Image:Screen Shot 2016-12-04 at 8.23.53 PM.png|thumb|right|400px|Figure 6. Relationship between bisphosphonates and osteoclasts at individual stages of cellular life.&amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;]]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Though the exact chemical mechanism by which alendronate inhibits FPPS remains unclear, nitrogen-containing bisphosphates (&amp;lt;scene name=&#039;74/745950/Ligand/2&#039;&amp;gt;N-BP&amp;lt;/scene&amp;gt;s) bind to the geranyl pyrophosphate/dimethylallyl (GPP/DMAPP) ligand binding pocket (Fig. 3) and alter the secondary structure of the enzyme&amp;lt;ref&amp;gt;Kavanagh KL, Guo K, Dunford JE, Wu X, Knapp S, and Ebetino FH (2006). The molecular mechanism of nitrogen-containing bisphosphonates as antiosteoporosis drugs. Proceedings of the National Academy of Sciences. 103, 7829–34&amp;lt;/ref&amp;gt;. Specifically, alendronate may bind to the FPPS allylic substrate-binding pocket by ligating the Magnesium ion center via phosphonate oxyanion nucleophilic attack&amp;lt;ref&amp;gt;Hosfield DJ, Zhang Y, Dougan DR, Broun A, Tari LW, Swanson RV (2003). Structural Basis for Bisphosphonate-mediated Inhibition of Isoprenoid Biosynthesis. Journal of Biological Chemistry. 2279, 8526–9&amp;lt;/ref&amp;gt;. Phosphonate groups are stabilized by a cluster of three Mg2+ ions via oxyanion-metal cation charge interactions, as well as three FPPS-conserved aspartate residues located within two alpha helical motifs (&amp;lt;scene name=&#039;74/745950/Aspartates/2&#039;&amp;gt;Asp-103, 107, and 243&amp;lt;/scene&amp;gt;) that form a &amp;lt;scene name=&#039;74/745950/Correct_ligand_binding_site/7&#039;&amp;gt;magnesium-bisphosphonate chelate&amp;lt;/scene&amp;gt; (Fig. 4)&amp;lt;ref&amp;gt;Tarshis L. C., Yan M., Poulter C. D., Sacchettini J. C. (1994) Biochemistry. 33, 10871–10877.&amp;lt;/ref&amp;gt;. N-BPs may bind to the GPP substrate-binding site because N-BPs resemble the structure of the enzyme’s natural substrates (GPP and DMAPP) and act as carbocation transition state analogs (Fig. 5). Interactions between N-BP and amino acid residues (&amp;lt;scene name=&#039;74/745950/Lys200_thr201/3&#039;&amp;gt;Thr-201 and Lys-200&amp;lt;/scene&amp;gt;) suggest that these inhibitors position nitrogen in the carbocation-binding site, then mimic the carbocation intermediate formed via substrate ionization &amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;. By acting as a transition state analog for isoprenoid biosynthesis, Fosamax effectively increases the activation energy of a regulatory/rate-determining step in the mevalonate pathway, subsequently reducing the concentration of product molecules that aid the continuous biodegradation of skeletal tissue.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== References ==&lt;br /&gt;
&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Contributors and Editors ==&lt;br /&gt;
&lt;br /&gt;
[[User:Alyssa Jewel D. Floro|Floro, Alyssa Jewel D.]] [[User:Justin Myles Kidd|Kidd, Justin M.]] [[User:Osna M. Samady|Samady, Osna M.]]&lt;/div&gt;</summary>
		<author><name>Justin Myles Kidd</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Fosamax_(alendronate_sodium)&amp;diff=2688477</id>
		<title>Fosamax (alendronate sodium)</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Fosamax_(alendronate_sodium)&amp;diff=2688477"/>
		<updated>2016-12-05T22:21:04Z</updated>

		<summary type="html">&lt;p&gt;Justin Myles Kidd: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;scene name=&#039;74/745950/Correct_ligand_binding_site/3&#039;&amp;gt;&amp;lt;/scene&amp;gt;&amp;lt;table style=&amp;quot;width:200px; border:1px solid black; float:right; &amp;quot;&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td colspan=&amp;quot;2&amp;quot;&amp;gt;&amp;lt;center&amp;gt; FOSAMAX &amp;lt;/center&amp;gt;&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td colspan=&amp;quot;2&amp;quot;&amp;gt;&amp;lt;center&amp;gt;[[Image:Fosamax.gif|thumb|center|200px|Figure 1. Fosamax prescription drug, tablet form.]]&amp;lt;/center&amp;gt;&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Formula:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;C4H13NO7P2&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Molar Mass:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;249.097 g/mol&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;INN:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Alendronic Acid&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;USAN:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Alendronate sodium&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;IUPAC:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;4-amino-1-hydroxybutylidene) bisphosphonic acid monosodium salt trihydrate&lt;br /&gt;
&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;/table&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Fosamax (Alendronate Sodium or Alendronic Acid) is a pharmaceutical drug administered as an antiresorptive therapy agent for osteodegenerative diseases such as [https://en.wikipedia.org/wiki/Osteoporosis Osteoporosis], [https://en.wikipedia.org/wiki/Paget&#039;s_disease_of_bone Paget&#039;s disease], and [https://en.wikipedia.org/wiki/Osteogenesis_imperfecta osteogenesis imperfecta]&amp;lt;ref&amp;gt;Gong Li, Altman Russ B, Klein Teri E . &amp;quot;Bisphosphonates pathway&amp;quot; Pharmacogenetics and genomics (2011). from https://www.pharmgkb.org/pathway/PA154423660&amp;lt;/ref&amp;gt;.&lt;br /&gt;
Functioning as a nitrogen-containing, second generation [https://en.wikipedia.org/wiki/Bisphosphonate bisphosphonate], Fosamax binds to [https://en.wikipedia.org/wiki/Hydroxylapatite hydroxyapatite] in bone and promotes [https://en.wikipedia.org/wiki/Apoptosis apoptosis] in [https://en.wikipedia.org/wiki/Osteoclast osteoclasts] (cells specialized in skeletal breakdown), thereby delaying the degradation of bone tissue. While incorporated in bone matrix, alendronate is not pharmacologically active, thus, it must be continuously administered to suppress osteoclasts on newly formed resorption surfaces &amp;lt;ref&amp;gt;Fosamax: Uses, Dosage &amp;amp; Side Effects - Drugs.com. (2016, November 3).Fosamax: Uses, Dosage &amp;amp; Side Effects - Drugs.com. Retrieved November 14, 2016, from https://www.drugs.com/fosamax.html&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
== History &amp;lt;ref&amp;gt;Fosamax (alendronate sodium). Fosamax New FDA Drug Approval | CenterWatch. Merck. Retrieved November 15, 2016, from http://www.centerwatch.com/drug-information/fda-approved-drugs/drug/26/fosamax-alendronate-sodium&amp;lt;/ref&amp;gt;==&lt;br /&gt;
Fosamax has been in use since September 29, 1995 after gaining [http://google2.fda.gov/search?q=fosamax&amp;amp;client=FDAgov&amp;amp;site=FDAgov&amp;amp;lr=&amp;amp;proxystylesheet=FDAgov&amp;amp;requiredfields=-archive%3AYes&amp;amp;output=xml_no_dtd&amp;amp;getfields=* Food and Drug Administration] (FDA) approval. The drug obtained FDA clearance based on data from five clinical trials, lasting two years, involving 1,827 postmenopausal women with osteoporosis in 16 different countries. The trials showed a significant increase in bone mineral density at the spine, hip, and other sites. Overall, the drug reduced the number of women with new spinal fractures by 48%, the total number of new spinal fractures by 63%, and reduced overall height loss by 35%. Today, the drug remains in circulation in caplet and liquid forms and attainable at most pharmaceutical distribution centers with an eligible prescription. &lt;br /&gt;
&lt;br /&gt;
== Side Effects &amp;lt;ref&amp;gt;Common Side Effects of Fosamax (Alendronate Sodium) Drug Center - RxList. (2015, August 26). RxList. Retrieved November 14, 2016, from  http://www.rxlist.com/fosamax-side-effects-drug-center.htm&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
Common side effects of Fosamax include gas, constipation, heartburn, diarrhea, bloating, nausea, vomiting, stomach pain, joint pain or swelling, swelling in your hands or feet, dizziness, headache, eye pain, back pain, or weakness.&lt;br /&gt;
Serious side effects of Fosamax include severe pain (joints, bone, muscle, jaw, back or heartburn), chest pain, difficulty swallowing, bloody stools, eye pain, skin blisters, and swelling of the face, tongue, or throat. &lt;br /&gt;
&lt;br /&gt;
== Structural Highlights &amp;lt;ref&amp;gt;Protein Data Bank in Europe: Bringing Structure to Biology, from http://www.ebi.ac.uk/pdbe/entry/pdb/2F89&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
As a bisphosphonate, Fosamax is a synthetic analog of [https://en.wikipedia.org/wiki/Pyrophosphate pyrophosphate], containing two protonated phosphorus oxyanions. Each oxyanion is attached to a hydroxyl group. In its drug form, sodium is bound in place of a carboxyl hydrogen. When in solution, Fosamax may form an ionic bond(s) with other metal cations such as magnesium. The central carbon is also attached to an -OH as well as a three-carbon chain leading up to an amino group (Fig. 2).&lt;br /&gt;
&amp;lt;StructureSection load=&#039;2f89&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;Crystal Structure of human FPPS in complex with a bisphosphonate.&#039; scene=&#039;&#039;&amp;gt; [[Image:Screen Shot 2016-12-04 at 3.21.51 PM.png|thumb|left|200px|Figure 2. Chemical structure of Fosamax (alendronate sodium).]] &lt;br /&gt;
[[Image:Screen Shot 2016-12-02 at 3.24.13 PM.png|thumb|left|400px|Figure 3. GPP/DMAPP ligand pocket of SPSS-alendronate complex indicated by yellow eclipse.]]&lt;br /&gt;
[[Image:Screen Shot 2016-12-02 at 3.33.04 PM.png|thumb|left|400px|Figure 4. Aspartate-Magnesium cation-phosphonate chelate within FPPS-alendronate complex. Pink sphere indicates Mg2+ ion; red indicates oxygen atom, yellow indicates phosphorous atom, blue (bond-line) indicates nitrogen, blue (ribbon) indicates alpha helix motif.]] [[Image:Screen Shot 2016-12-04 at 8.42.20 PM.png|thumb|left|500px|Figure 5. Comparison between the structure of the carbocation transition states of DMAPP and GPP to the nitrogen-containing bisphosphonate alendronate. Close similarity suggests that Fosamax acts as carbocation transition state analog of isoprenoid diphosphates &amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;.]]&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Mechanism of Action ==&lt;br /&gt;
Functioning as a nitrogen-containing, second generation bisphosphonate, Fosamax binds to hydroxyapatite in bone and promotes apoptosis in osteoclasts (cells specialized in skeletal breakdown) (Fig. 6), thus slowing the breakdown of bone&amp;lt;ref&amp;gt;Drake, Matthew T., Bart L. Clarke, and Sundeep Khosla. &amp;quot;Bisphosphonates: Mechanism of Action and Role in Clinical Practice.&amp;quot; Mayo Clinic Proceedings 83, no. 9 (2008): 1032-045. doi:10.4065/83.9.1032.&amp;lt;/ref&amp;gt;. In order to accomplish this, Fosamax inhibits [http://www.uniprot.org/uniprot/P14324 farnesyl pyrophosphate synthase] (FPPS), one of the enzymes found in the [https://en.wikipedia.org/wiki/Mevalonate_pathway mevalonic acid pathway], thereby reducing the production of isoprenoid compounds that are essential for post-translational modification of small guanosine triphosphate (GTP)-binding proteins (e.g. Rho, Rab and [https://pdb101.rcsb.org/motm/148 Ras])&amp;lt;ref&amp;gt;Luckman SP, Hughes DE, Coxon FP, Russell RGG, Rogers MJ (2005). Nitrogen-Containing Biphosphonates Inhibit the Mevalonate Pathway and Prevent Post-Translational Prenylation of GTP-Binding Proteins, Including Ras. Journal of Bone and Mineral Research. 20, 1265–74&amp;lt;/ref&amp;gt;. By inhibiting FPPS, Fosamax discourages the successive condensation of isopentenyl pyrophosphate with dimethylallyl pyrophosphate and geranyl pyrophosphate, which interferes with osteoclast function and survival &amp;lt;ref&amp;gt;Alendronic acid. (2005, June 13), from http://www.drugbank.ca/drugs/DB00630#bond-15126&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;Fisher, J. E., Rogers, M. J., Halasy, J. M., Luckman, S. P., Hughes, D. E., Masarachia, P. J., … Reszka, A. A. (1999). Alendronate mechanism of action: geranylgeraniol, an intermediate in the mevalonate pathway, prevents inhibition of osteoclast formation, bone resorption, and kinase activation in vitro. Proceedings of the National Academy of Sciences, 96(1), 133–138. doi:10.1073/pnas.96.1.133, from http://www.pnas.org/content/96/1/133.full.pdf&amp;lt;/ref&amp;gt;. [[Image:Screen Shot 2016-12-04 at 8.23.53 PM.png|thumb|right|400px|Figure 6. Relationship between bisphosphonates and osteoclasts at individual stages of cellular life.&amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;]]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Though the exact chemical mechanism by which alendronate inhibits FPPS remains unclear, nitrogen-containing bisphosphates (&amp;lt;scene name=&#039;74/745950/Ligand/2&#039;&amp;gt;N-BP&amp;lt;/scene&amp;gt;s) bind to the geranyl pyrophosphate/dimethylallyl (GPP/DMAPP) ligand binding pocket (Fig. 3) and alter the secondary structure of the enzyme&amp;lt;ref&amp;gt;Kavanagh KL, Guo K, Dunford JE, Wu X, Knapp S, and Ebetino FH (2006). The molecular mechanism of nitrogen-containing bisphosphonates as antiosteoporosis drugs. Proceedings of the National Academy of Sciences. 103, 7829–34&amp;lt;/ref&amp;gt;. Specifically, alendronate may bind to the FPPS allylic substrate-binding pocket by ligating the Magnesium ion center via phosphonate oxyanion nucleophilic attack&amp;lt;ref&amp;gt;Hosfield DJ, Zhang Y, Dougan DR, Broun A, Tari LW, Swanson RV (2003). Structural Basis for Bisphosphonate-mediated Inhibition of Isoprenoid Biosynthesis. Journal of Biological Chemistry. 2279, 8526–9&amp;lt;/ref&amp;gt;. Phosphonate groups are stabilized by a cluster of three Mg2+ ions via oxyanion-metal cation charge interactions, as well as three FPPS-conserved aspartate residues located within two alpha helical motifs (&amp;lt;scene name=&#039;74/745950/Aspartates/2&#039;&amp;gt;Asp-103, 107, and 243&amp;lt;/scene&amp;gt;) that form a &amp;lt;scene name=&#039;74/745950/Correct_ligand_binding_site/7&#039;&amp;gt;magnesium-bisphosphonate chelate&amp;lt;/scene&amp;gt; (Fig. 4)&amp;lt;ref&amp;gt;Tarshis L. C., Yan M., Poulter C. D., Sacchettini J. C. (1994) Biochemistry. 33, 10871–10877.&amp;lt;/ref&amp;gt;. N-BPs may bind to the GPP substrate-binding site because N-BPs resemble the structure of the enzyme’s natural substrates (GPP and DMAPP) and act as carbocation transition state analogs (Fig. 5). Interactions between N-BP and amino acid residues (&amp;lt;scene name=&#039;74/745950/Lys200_thr201/3&#039;&amp;gt;Thr-201 and Lys-200&amp;lt;/scene&amp;gt;) suggest that these inhibitors position nitrogen in the carbocation-binding site, then mimic the carbocation intermediate formed via substrate ionization &amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;. By acting as a transition state analog for isoprenoid biosynthesis, Fosamax effectively increases the activation energy of a regulatory/rate-determining step in the mevalonate pathway, subsequently reducing the concentration of product molecules that aid the continuous biodegradation of skeletal tissue.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== References ==&lt;br /&gt;
&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Contributors and Editors ==&lt;br /&gt;
&lt;br /&gt;
[[User:Alyssa Jewel D. Floro|Floro, Alyssa Jewel D.]] [[User:Justin Myles Kidd|Kidd, Justin M.]] [[User:Osna M. Samady|Samady, Osna M.]]&lt;/div&gt;</summary>
		<author><name>Justin Myles Kidd</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Fosamax_(alendronate_sodium)&amp;diff=2688476</id>
		<title>Fosamax (alendronate sodium)</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Fosamax_(alendronate_sodium)&amp;diff=2688476"/>
		<updated>2016-12-05T22:19:26Z</updated>

		<summary type="html">&lt;p&gt;Justin Myles Kidd: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;scene name=&#039;74/745950/Correct_ligand_binding_site/3&#039;&amp;gt;&amp;lt;/scene&amp;gt;&amp;lt;table style=&amp;quot;width:200px; border:1px solid black; float:right; &amp;quot;&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td colspan=&amp;quot;2&amp;quot;&amp;gt;&amp;lt;center&amp;gt; FOSAMAX &amp;lt;/center&amp;gt;&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td colspan=&amp;quot;2&amp;quot;&amp;gt;&amp;lt;center&amp;gt;[[Image:Fosamax.gif|thumb|center|200px|Figure 1. Fosamax prescription drug, tablet form.]]&amp;lt;/center&amp;gt;&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Formula:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;C4H13NO7P2&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Molar Mass:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;249.097 g/mol&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;INN:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Alendronic Acid&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;USAN:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Alendronate sodium&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;IUPAC:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;4-amino-1-hydroxybutylidene) bisphosphonic acid monosodium salt trihydrate&lt;br /&gt;
&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;/table&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Fosamax (Alendronate Sodium or Alendronic Acid) is a pharmaceutical drug administered as an antiresorptive therapy agent for osteodegenerative diseases such as [https://en.wikipedia.org/wiki/Osteoporosis Osteoporosis], [https://en.wikipedia.org/wiki/Paget&#039;s_disease_of_bone Paget&#039;s disease], and [https://en.wikipedia.org/wiki/Osteogenesis_imperfecta osteogenesis imperfecta]&amp;lt;ref&amp;gt;Gong Li, Altman Russ B, Klein Teri E . &amp;quot;Bisphosphonates pathway&amp;quot; Pharmacogenetics and genomics (2011). from https://www.pharmgkb.org/pathway/PA154423660&amp;lt;/ref&amp;gt;.&lt;br /&gt;
Functioning as a nitrogen-containing, second generation [https://en.wikipedia.org/wiki/Bisphosphonate bisphosphonate], Fosamax binds to [https://en.wikipedia.org/wiki/Hydroxylapatite hydroxyapatite] in bone and promotes [https://en.wikipedia.org/wiki/Apoptosis apoptosis] in [https://en.wikipedia.org/wiki/Osteoclast osteoclasts] (cells specialized in skeletal breakdown), thereby delaying the degradation of bone tissue. While incorporated in bone matrix, alendronate is not pharmacologically active, thus, it must be continuously administered to suppress osteoclasts on newly formed resorption surfaces &amp;lt;ref&amp;gt;Fosamax: Uses, Dosage &amp;amp; Side Effects - Drugs.com. (2016, November 3).Fosamax: Uses, Dosage &amp;amp; Side Effects - Drugs.com. Retrieved November 14, 2016, from https://www.drugs.com/fosamax.html&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
== History &amp;lt;ref&amp;gt;Fosamax (alendronate sodium). Fosamax New FDA Drug Approval | CenterWatch. Merck. Retrieved November 15, 2016, from http://www.centerwatch.com/drug-information/fda-approved-drugs/drug/26/fosamax-alendronate-sodium&amp;lt;/ref&amp;gt;==&lt;br /&gt;
Fosamax has been in use since September 29, 1995 after gaining [http://google2.fda.gov/search?q=fosamax&amp;amp;client=FDAgov&amp;amp;site=FDAgov&amp;amp;lr=&amp;amp;proxystylesheet=FDAgov&amp;amp;requiredfields=-archive%3AYes&amp;amp;output=xml_no_dtd&amp;amp;getfields=* Food and Drug Administration] (FDA) approval. The drug obtained FDA clearance based on data from five clinical trials, lasting two years, involving 1,827 postmenopausal women with osteoporosis in 16 different countries. The trials showed a significant increase in bone mineral density at the spine, hip, and other sites. Overall, the drug reduced the number of women with new spinal fractures by 48%, the total number of new spinal fractures by 63%, and reduced overall height loss by 35%. Today, the drug remains in circulation in caplet and liquid forms and attainable at most pharmaceutical distribution centers with an eligible prescription. &lt;br /&gt;
&lt;br /&gt;
== Side Effects &amp;lt;ref&amp;gt;Common Side Effects of Fosamax (Alendronate Sodium) Drug Center - RxList. (2015, August 26). RxList. Retrieved November 14, 2016, from  http://www.rxlist.com/fosamax-side-effects-drug-center.htm&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
Common side effects of Fosamax include gas, constipation, heartburn, diarrhea, bloating, nausea, vomiting, stomach pain, joint pain or swelling, swelling in your hands or feet, dizziness, headache, eye pain, back pain, or weakness.&lt;br /&gt;
Serious side effects of Fosamax include severe pain (joints, bone, muscle, jaw, back or heartburn), chest pain, difficulty swallowing, bloody stools, eye pain, skin blisters, and swelling of the face, tongue, or throat. &lt;br /&gt;
&lt;br /&gt;
== Structural Highlights &amp;lt;ref&amp;gt;Protein Data Bank in Europe: Bringing Structure to Biology, from http://www.ebi.ac.uk/pdbe/entry/pdb/2F89&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
As a bisphosphonate, Fosamax is a synthetic analog of [https://en.wikipedia.org/wiki/Pyrophosphate pyrophosphate], containing two protonated phosphorus oxyanions. Each oxyanion is attached to a hydroxyl group. In its drug form, sodium is bound in place of a carboxyl hydrogen. When in solution, Fosamax may form an ionic bond(s) with other metal cations such as magnesium. The central carbon is also attached to an -OH as well as a three-carbon chain leading up to an amino group (Fig. 2).&lt;br /&gt;
&amp;lt;StructureSection load=&#039;2f89&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;Crystal Structure of human FPPS in complex with a bisphosphonate.&#039; scene=&#039;&#039;&amp;gt; [[Image:Screen Shot 2016-12-04 at 3.21.51 PM.png|thumb|left|200px|Figure 2. Chemical structure of Fosamax (alendronate sodium).]] &lt;br /&gt;
[[Image:Screen Shot 2016-12-02 at 3.24.13 PM.png|thumb|left|400px|Figure 3. GPP/DMAPP ligand pocket of SPSS-alendronate complex indicated by yellow eclipse.]]&lt;br /&gt;
[[Image:Screen Shot 2016-12-02 at 3.33.04 PM.png|thumb|left|400px|Figure 4. Aspartate-Magnesium cation-phosphonate chelate within FPPS-alendronate complex. Pink sphere indicates Mg2+ ion; red indicates oxygen atom, yellow indicates phosphorous atom, blue (bond-line) indicates nitrogen, blue (ribbon) indicates alpha helix motif.]] [[Image:Screen Shot 2016-12-04 at 8.42.20 PM.png|thumb|left|500px|Figure 5. Comparison between the structure of the carbocation transition states of DMAPP and GPP to the nitrogen-containing bisphosphonate alendronate. Close similarity suggests that Fosamax acts as carbocation transition state analog of isoprenoid diphosphates &amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;.]]&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Mechanism of Action ==&lt;br /&gt;
Functioning as a nitrogen-containing, second generation bisphosphonate, Fosamax binds to hydroxyapatite in bone and promotes apoptosis in osteoclasts (cells specialized in skeletal breakdown) (Fig. 6), thus slowing the breakdown of bone&amp;lt;ref&amp;gt;Drake, Matthew T., Bart L. Clarke, and Sundeep Khosla. &amp;quot;Bisphosphonates: Mechanism of Action and Role in Clinical Practice.&amp;quot; Mayo Clinic Proceedings 83, no. 9 (2008): 1032-045. doi:10.4065/83.9.1032.&amp;lt;/ref&amp;gt;. In order to accomplish this, Fosamax inhibits [http://www.uniprot.org/uniprot/P14324 farnesyl pyrophosphate synthase] (FPPS), one of the enzymes found in the [https://en.wikipedia.org/wiki/Mevalonate_pathway mevalonic acid pathway], thereby reducing the production of isoprenoid compounds that are essential for post-translational modification of small guanosine triphosphate (GTP)-binding proteins (e.g. Rho, Rab and [https://pdb101.rcsb.org/motm/148 Ras])&amp;lt;ref&amp;gt;Luckman SP, Hughes DE, Coxon FP, Russell RGG, Rogers MJ (2005). Nitrogen-Containing Biphosphonates Inhibit the Mevalonate Pathway and Prevent Post-Translational Prenylation of GTP-Binding Proteins, Including Ras. Journal of Bone and Mineral Research. 20, 1265–74&amp;lt;/ref&amp;gt;. By inhibiting FPPS, Fosamax discourages the successive condensation of isopentenyl pyrophosphate with dimethylallyl pyrophosphate and geranyl pyrophosphate, which interferes with osteoclast function and survival &amp;lt;ref&amp;gt;Alendronic acid. (2005, June 13), from http://www.drugbank.ca/drugs/DB00630#bond-15126&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;Fisher, J. E., Rogers, M. J., Halasy, J. M., Luckman, S. P., Hughes, D. E., Masarachia, P. J., … Reszka, A. A. (1999). Alendronate mechanism of action: geranylgeraniol, an intermediate in the mevalonate pathway, prevents inhibition of osteoclast formation, bone resorption, and kinase activation in vitro. Proceedings of the National Academy of Sciences, 96(1), 133–138. doi:10.1073/pnas.96.1.133, from http://www.pnas.org/content/96/1/133.full.pdf&amp;lt;/ref&amp;gt;. [[Image:Screen Shot 2016-12-04 at 8.23.53 PM.png|thumb|right|400px|Figure 6. Relationship between bisphosphonates and osteoclasts at individual stages of cellular life.&amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;]]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Though the exact chemical mechanism by which alendronate inhibits FPPS remains unclear, nitrogen-containing bisphosphates (&amp;lt;scene name=&#039;74/745950/Ligand/2&#039;&amp;gt;N-BP&amp;lt;/scene&amp;gt;s) bind to the geranyl pyrophosphate/dimethylallyl (GPP/DMAPP) ligand binding pocket (Fig. 3) and alter the secondary structure of the enzyme&amp;lt;ref&amp;gt;Kavanagh KL, Guo K, Dunford JE, Wu X, Knapp S, and Ebetino FH (2006). The molecular mechanism of nitrogen-containing bisphosphonates as antiosteoporosis drugs. Proceedings of the National Academy of Sciences. 103, 7829–34&amp;lt;/ref&amp;gt;. Specifically, alendronate may bind to the FPPS allylic substrate-binding pocket by ligating the Magnesium ion center via phosphonate oxyanion nucleophilic attack&amp;lt;ref&amp;gt;Hosfield DJ, Zhang Y, Dougan DR, Broun A, Tari LW, Swanson RV (2003). Structural Basis for Bisphosphonate-mediated Inhibition of Isoprenoid Biosynthesis. Journal of Biological Chemistry. 2279, 8526–9&amp;lt;/ref&amp;gt;. Phosphonate groups are stabilized by a cluster of three Mg2+ ions via oxyanion-metal cation charge interactions, as well as three FPPS-conserved aspartate residues located within two alpha helical motifs (&amp;lt;scene name=&#039;74/745950/Aspartates/2&#039;&amp;gt;Asp-103, 107, and 243&amp;lt;/scene&amp;gt;) that form a &amp;lt;scene name=&#039;74/745950/Correct_ligand_binding_site/7&#039;&amp;gt;magnesium-bisphosphonate chelate&amp;lt;/scene&amp;gt; (Fig. 4)&amp;lt;ref&amp;gt;Tarshis L. C., Yan M., Poulter C. D., Sacchettini J. C. (1994) Biochemistry. 33, 10871–10877. [PubMed]&amp;lt;/ref&amp;gt;. N-BPs may bind to the GPP substrate-binding site because N-BPs resemble the structure of the enzyme’s natural substrates (GPP and DMAPP) and act as carbocation transition state analogs (Fig. 5). Interactions between N-BP and amino acid residues (&amp;lt;scene name=&#039;74/745950/Lys200_thr201/3&#039;&amp;gt;Thr-201 and Lys-200&amp;lt;/scene&amp;gt;) suggest that these inhibitors position nitrogen in the carbocation-binding site, then mimic the carbocation intermediate formed via substrate ionization &amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;. By acting as a transition state analog for isoprenoid biosynthesis, Fosamax effectively increases the activation energy of a regulatory/rate-determining step in the mevalonate pathway, subsequently reducing the concentration of product molecules that aid the continuous biodegradation of skeletal tissue.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== References ==&lt;br /&gt;
&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Contributors and Editors ==&lt;br /&gt;
&lt;br /&gt;
[[User:Alyssa Jewel D. Floro|Floro, Alyssa Jewel D.]] [[User:Justin Myles Kidd|Kidd, Justin M.]] [[User:Osna M. Samady|Samady, Osna M.]]&lt;/div&gt;</summary>
		<author><name>Justin Myles Kidd</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Fosamax_(alendronate_sodium)&amp;diff=2688474</id>
		<title>Fosamax (alendronate sodium)</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Fosamax_(alendronate_sodium)&amp;diff=2688474"/>
		<updated>2016-12-05T22:16:06Z</updated>

		<summary type="html">&lt;p&gt;Justin Myles Kidd: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;scene name=&#039;74/745950/Correct_ligand_binding_site/3&#039;&amp;gt;&amp;lt;/scene&amp;gt;&amp;lt;table style=&amp;quot;width:200px; border:1px solid black; float:right; &amp;quot;&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td colspan=&amp;quot;2&amp;quot;&amp;gt;&amp;lt;center&amp;gt; FOSAMAX &amp;lt;/center&amp;gt;&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td colspan=&amp;quot;2&amp;quot;&amp;gt;&amp;lt;center&amp;gt;[[Image:Fosamax.gif|thumb|center|200px|Figure 1. Fosamax prescription drug, tablet form.]]&amp;lt;/center&amp;gt;&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Formula:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;C4H13NO7P2&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Molar Mass:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;249.097 g/mol&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;INN:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Alendronic Acid&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;USAN:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Alendronate sodium&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;IUPAC:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;4-amino-1-hydroxybutylidene) bisphosphonic acid monosodium salt trihydrate&lt;br /&gt;
&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;/table&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Fosamax (Alendronate Sodium or Alendronic Acid) is a pharmaceutical drug administered as an antiresorptive therapy agent for osteodegenerative diseases such as [https://en.wikipedia.org/wiki/Osteoporosis Osteoporosis], [https://en.wikipedia.org/wiki/Paget&#039;s_disease_of_bone Paget&#039;s disease], and [https://en.wikipedia.org/wiki/Osteogenesis_imperfecta osteogenesis imperfecta]&amp;lt;ref&amp;gt;Gong Li, Altman Russ B, Klein Teri E . &amp;quot;Bisphosphonates pathway&amp;quot; Pharmacogenetics and genomics (2011). from https://www.pharmgkb.org/pathway/PA154423660&amp;lt;/ref&amp;gt;.&lt;br /&gt;
Functioning as a nitrogen-containing, second generation [https://en.wikipedia.org/wiki/Bisphosphonate bisphosphonate], Fosamax binds to [https://en.wikipedia.org/wiki/Hydroxylapatite hydroxyapatite] in bone and promotes [https://en.wikipedia.org/wiki/Apoptosis apoptosis] in [https://en.wikipedia.org/wiki/Osteoclast osteoclasts] (cells specialized in skeletal breakdown), thereby delaying the degradation of bone tissue. While incorporated in bone matrix, alendronate is not pharmacologically active, thus, it must be continuously administered to suppress osteoclasts on newly formed resorption surfaces &amp;lt;ref&amp;gt;Fosamax: Uses, Dosage &amp;amp; Side Effects - Drugs.com. (2016, November 3).Fosamax: Uses, Dosage &amp;amp; Side Effects - Drugs.com. Retrieved November 14, 2016, from https://www.drugs.com/fosamax.html&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
== History &amp;lt;ref&amp;gt;Fosamax (alendronate sodium). Fosamax New FDA Drug Approval | CenterWatch. Merck. Retrieved November 15, 2016, from http://www.centerwatch.com/drug-information/fda-approved-drugs/drug/26/fosamax-alendronate-sodium&amp;lt;/ref&amp;gt;==&lt;br /&gt;
Fosamax has been in use since September 29, 1995 after gaining [http://google2.fda.gov/search?q=fosamax&amp;amp;client=FDAgov&amp;amp;site=FDAgov&amp;amp;lr=&amp;amp;proxystylesheet=FDAgov&amp;amp;requiredfields=-archive%3AYes&amp;amp;output=xml_no_dtd&amp;amp;getfields=* Food and Drug Administration] (FDA) approval. The drug obtained FDA clearance based on data from five clinical trials, lasting two years, involving 1,827 postmenopausal women with osteoporosis in 16 different countries. The trials showed a significant increase in bone mineral density at the spine, hip, and other sites. Overall, the drug reduced the number of women with new spinal fractures by 48%, the total number of new spinal fractures by 63%, and reduced overall height loss by 35%. Today, the drug remains in circulation in caplet and liquid forms and attainable at most pharmaceutical distribution centers with an eligible prescription. &lt;br /&gt;
&lt;br /&gt;
== Side Effects &amp;lt;ref&amp;gt;Common Side Effects of Fosamax (Alendronate Sodium) Drug Center - RxList. (2015, August 26). RxList. Retrieved November 14, 2016, from  http://www.rxlist.com/fosamax-side-effects-drug-center.htm&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
Common side effects of Fosamax include gas, constipation, heartburn, diarrhea, bloating, nausea, vomiting, stomach pain, joint pain or swelling, swelling in your hands or feet, dizziness, headache, eye pain, back pain, or weakness.&lt;br /&gt;
Serious side effects of Fosamax include severe pain (joints, bone, muscle, jaw, back or heartburn), chest pain, difficulty swallowing, bloody stools, eye pain, skin blisters, and swelling of the face, tongue, or throat. &lt;br /&gt;
&lt;br /&gt;
== Structural Highlights &amp;lt;ref&amp;gt;Protein Data Bank in Europe: Bringing Structure to Biology, from http://www.ebi.ac.uk/pdbe/entry/pdb/2F89&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
As a bisphosphonate, Fosamax is a synthetic analog of [https://en.wikipedia.org/wiki/Pyrophosphate pyrophosphate], containing two protonated phosphorus oxyanions. Each oxyanion is attached to a hydroxyl group. In its drug form, sodium is bound in place of a carboxyl hydrogen. When in solution, Fosamax may form an ionic bond(s) with other metal cations such as magnesium. The central carbon is also attached to an -OH as well as a three-carbon chain leading up to an amino group (Fig. 2).&lt;br /&gt;
&amp;lt;StructureSection load=&#039;2f89&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;Crystal Structure of human FPPS in complex with a bisphosphonate.&#039; scene=&#039;&#039;&amp;gt; [[Image:Screen Shot 2016-12-04 at 3.21.51 PM.png|thumb|left|200px|Figure 2. Chemical structure of Fosamax (alendronate sodium).]] &lt;br /&gt;
[[Image:Screen Shot 2016-12-02 at 3.24.13 PM.png|thumb|left|400px|Figure 3. GPP/DMAPP ligand pocket of SPSS-alendronate complex indicated by yellow eclipse.]]&lt;br /&gt;
[[Image:Screen Shot 2016-12-02 at 3.33.04 PM.png|thumb|left|400px|Figure 4. Aspartate-Magnesium cation-phosphonate chelate within FPPS-alendronate complex. Pink sphere indicates Mg2+ ion; red indicates oxygen atom, yellow indicates phosphorous atom, blue (bond-line) indicates nitrogen, blue (ribbon) indicates alpha helix motif.]] [[Image:Screen Shot 2016-12-04 at 8.42.20 PM.png|thumb|left|500px|Figure 5. Comparison between the structure of the carbocation transition states of DMAPP and GPP to the nitrogen-containing bisphosphonate alendronate. Close similarity suggests that Fosamax acts as carbocation transition state analog of isoprenoid diphosphates &amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;.]]&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Mechanism of Action ==&lt;br /&gt;
Functioning as a nitrogen-containing, second generation bisphosphonate, Fosamax binds to hydroxyapatite in bone and promotes apoptosis in osteoclasts (cells specialized in skeletal breakdown) (Fig. 6), thus slowing the breakdown of bone&amp;lt;ref&amp;gt;Drake, Matthew T., Bart L. Clarke, and Sundeep Khosla. &amp;quot;Bisphosphonates: Mechanism of Action and Role in Clinical Practice.&amp;quot; Mayo Clinic Proceedings 83, no. 9 (2008): 1032-045. doi:10.4065/83.9.1032.&amp;lt;/ref&amp;gt;. In order to accomplish this, Fosamax inhibits [http://www.uniprot.org/uniprot/P14324 farnesyl pyrophosphate synthase] (FPPS), one of the enzymes found in the [https://en.wikipedia.org/wiki/Mevalonate_pathway mevalonic acid pathway], thereby reducing the production of isoprenoid compounds that are essential for post-translational modification of small guanosine triphosphate (GTP)-binding proteins (e.g. Rho, Rab and [https://pdb101.rcsb.org/motm/148 Ras])&amp;lt;ref&amp;gt;Luckman SP, Hughes DE, Coxon FP, Russell RGG, Rogers MJ. Nitrogen-Containing Biphosphonates Inhibit the Mevalonate Pathway and Prevent Post-Translational Prenylation of GTP-Binding Proteins, Including Ras. Journal of Bone and Mineral Research. 2005;20:1265–74&amp;lt;/ref&amp;gt;. By inhibiting FPPS, Fosamax discourages the successive condensation of isopentenyl pyrophosphate with dimethylallyl pyrophosphate and geranyl pyrophosphate, which interferes with osteoclast function and survival &amp;lt;ref&amp;gt;Alendronic acid. (2005, June 13), from http://www.drugbank.ca/drugs/DB00630#bond-15126&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;Fisher, J. E., Rogers, M. J., Halasy, J. M., Luckman, S. P., Hughes, D. E., Masarachia, P. J., … Reszka, A. A. (1999). Alendronate mechanism of action: geranylgeraniol, an intermediate in the mevalonate pathway, prevents inhibition of osteoclast formation, bone resorption, and kinase activation in vitro. Proceedings of the National Academy of Sciences, 96(1), 133–138. doi:10.1073/pnas.96.1.133, from http://www.pnas.org/content/96/1/133.full.pdf&amp;lt;/ref&amp;gt;. [[Image:Screen Shot 2016-12-04 at 8.23.53 PM.png|thumb|right|400px|Figure 6. Relationship between bisphosphonates and osteoclasts at individual stages of cellular life.&amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;]]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Though the exact chemical mechanism by which alendronate inhibits FPPS remains unclear, nitrogen-containing bisphosphates (&amp;lt;scene name=&#039;74/745950/Ligand/2&#039;&amp;gt;N-BP&amp;lt;/scene&amp;gt;s) bind to the geranyl pyrophosphate/dimethylallyl (GPP/DMAPP) ligand binding pocket (Fig. 3) and alter the secondary structure of the enzyme&amp;lt;ref&amp;gt;Kavanagh KL, Guo K, Dunford JE, Wu X, Knapp S, Ebetino FH, et al. The molecular mechanism of nitrogen-containing bisphosphonates as antiosteoporosis drugs. Proceedings of the National Academy of Sciences. 2006;103:7829–34&amp;lt;/ref&amp;gt;. Specifically, alendronate may bind to the FPPS allylic substrate-binding pocket by ligating the Magnesium ion center via phosphonate oxyanion nucleophilic attack&amp;lt;ref&amp;gt;Hosfield DJ, Zhang Y, Dougan DR, Broun A, Tari LW, Swanson RV (2003). Structural Basis for Bisphosphonate-mediated Inhibition of Isoprenoid Biosynthesis. Journal of Biological Chemistry. 2279, 8526–9&amp;lt;/ref&amp;gt;. Phosphonate groups are stabilized by a cluster of three Mg2+ ions via oxyanion-metal cation charge interactions, as well as three FPPS-conserved aspartate residues located within two alpha helical motifs (&amp;lt;scene name=&#039;74/745950/Aspartates/2&#039;&amp;gt;Asp-103, 107, and 243&amp;lt;/scene&amp;gt;) that form a &amp;lt;scene name=&#039;74/745950/Correct_ligand_binding_site/7&#039;&amp;gt;magnesium-bisphosphonate chelate&amp;lt;/scene&amp;gt; (Fig. 4)&amp;lt;ref&amp;gt;Tarshis L. C., Yan M., Poulter C. D., Sacchettini J. C. (1994) Biochemistry. 33, 10871–10877. [PubMed]&amp;lt;/ref&amp;gt;. N-BPs may bind to the GPP substrate-binding site because N-BPs resemble the structure of the enzyme’s natural substrates (GPP and DMAPP) and act as carbocation transition state analogs (Fig. 5). Interactions between N-BP and amino acid residues (&amp;lt;scene name=&#039;74/745950/Lys200_thr201/3&#039;&amp;gt;Thr-201 and Lys-200&amp;lt;/scene&amp;gt;) suggest that these inhibitors position nitrogen in the carbocation-binding site, then mimic the carbocation intermediate formed via substrate ionization &amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;. By acting as a transition state analog for isoprenoid biosynthesis, Fosamax effectively increases the activation energy of a regulatory/rate-determining step in the mevalonate pathway, subsequently reducing the concentration of product molecules that aid the continuous biodegradation of skeletal tissue.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== References ==&lt;br /&gt;
&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Contributors and Editors ==&lt;br /&gt;
&lt;br /&gt;
[[User:Alyssa Jewel D. Floro|Floro, Alyssa Jewel D.]] [[User:Justin Myles Kidd|Kidd, Justin M.]] [[User:Osna M. Samady|Samady, Osna M.]]&lt;/div&gt;</summary>
		<author><name>Justin Myles Kidd</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Fosamax_(alendronate_sodium)&amp;diff=2688472</id>
		<title>Fosamax (alendronate sodium)</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Fosamax_(alendronate_sodium)&amp;diff=2688472"/>
		<updated>2016-12-05T22:07:44Z</updated>

		<summary type="html">&lt;p&gt;Justin Myles Kidd: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;scene name=&#039;74/745950/Correct_ligand_binding_site/3&#039;&amp;gt;&amp;lt;/scene&amp;gt;&amp;lt;table style=&amp;quot;width:200px; border:1px solid black; float:right; &amp;quot;&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td colspan=&amp;quot;2&amp;quot;&amp;gt;&amp;lt;center&amp;gt; FOSAMAX &amp;lt;/center&amp;gt;&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td colspan=&amp;quot;2&amp;quot;&amp;gt;&amp;lt;center&amp;gt;[[Image:Fosamax.gif|thumb|center|200px|Figure 1. Fosamax prescription drug, tablet form.]]&amp;lt;/center&amp;gt;&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Formula:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;C4H13NO7P2&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Molar Mass:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;249.097 g/mol&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;INN:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Alendronic Acid&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;USAN:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Alendronate sodium&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;IUPAC:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;4-amino-1-hydroxybutylidene) bisphosphonic acid monosodium salt trihydrate&lt;br /&gt;
&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;/table&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Fosamax (Alendronate Sodium or Alendronic Acid) is a pharmaceutical drug administered as an antiresorptive therapy agent for osteodegenerative diseases such as [https://en.wikipedia.org/wiki/Osteoporosis Osteoporosis], [https://en.wikipedia.org/wiki/Paget&#039;s_disease_of_bone Paget&#039;s disease], and [https://en.wikipedia.org/wiki/Osteogenesis_imperfecta osteogenesis imperfecta]&amp;lt;ref&amp;gt;Gong Li, Altman Russ B, Klein Teri E . &amp;quot;Bisphosphonates pathway&amp;quot; Pharmacogenetics and genomics (2011). from https://www.pharmgkb.org/pathway/PA154423660&amp;lt;/ref&amp;gt;.&lt;br /&gt;
Functioning as a nitrogen-containing, second generation [https://en.wikipedia.org/wiki/Bisphosphonate bisphosphonate], Fosamax binds to [https://en.wikipedia.org/wiki/Hydroxylapatite hydroxyapatite] in bone and promotes [https://en.wikipedia.org/wiki/Apoptosis apoptosis] in [https://en.wikipedia.org/wiki/Osteoclast osteoclasts] (cells specialized in skeletal breakdown), thereby delaying the degradation of bone tissue. While incorporated in bone matrix, alendronate is not pharmacologically active, thus, it must be continuously administered to suppress osteoclasts on newly formed resorption surfaces &amp;lt;ref&amp;gt;Fosamax: Uses, Dosage &amp;amp; Side Effects - Drugs.com. (2016, November 3).Fosamax: Uses, Dosage &amp;amp; Side Effects - Drugs.com. Retrieved November 14, 2016, from https://www.drugs.com/fosamax.html&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
== History &amp;lt;ref&amp;gt;Fosamax (alendronate sodium). Fosamax New FDA Drug Approval | CenterWatch. Merck. Retrieved November 15, 2016, from http://www.centerwatch.com/drug-information/fda-approved-drugs/drug/26/fosamax-alendronate-sodium&amp;lt;/ref&amp;gt;==&lt;br /&gt;
Fosamax has been in use since September 29, 1995 after gaining [http://google2.fda.gov/search?q=fosamax&amp;amp;client=FDAgov&amp;amp;site=FDAgov&amp;amp;lr=&amp;amp;proxystylesheet=FDAgov&amp;amp;requiredfields=-archive%3AYes&amp;amp;output=xml_no_dtd&amp;amp;getfields=* Food and Drug Administration] (FDA) approval. The drug obtained FDA clearance based on data from five clinical trials, lasting two years, involving 1,827 postmenopausal women with osteoporosis in 16 different countries. The trials showed a significant increase in bone mineral density at the spine, hip, and other sites. Overall, the drug reduced the number of women with new spinal fractures by 48%, the total number of new spinal fractures by 63%, and reduced overall height loss by 35%. Today, the drug remains in circulation in caplet and liquid forms and attainable at most pharmaceutical distribution centers with an eligible prescription. &lt;br /&gt;
&lt;br /&gt;
== Side Effects &amp;lt;ref&amp;gt;Common Side Effects of Fosamax (Alendronate Sodium) Drug Center - RxList. (2015, August 26). RxList. Retrieved November 14, 2016, from  http://www.rxlist.com/fosamax-side-effects-drug-center.htm&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
Common side effects of Fosamax include gas, constipation, heartburn, diarrhea, bloating, nausea, vomiting, stomach pain, joint pain or swelling, swelling in your hands or feet, dizziness, headache, eye pain, back pain, or weakness.&lt;br /&gt;
Serious side effects of Fosamax include severe pain (joints, bone, muscle, jaw, back or heartburn), chest pain, difficulty swallowing, bloody stools, eye pain, skin blisters, and swelling of the face, tongue, or throat. &lt;br /&gt;
&lt;br /&gt;
== Structural Highlights &amp;lt;ref&amp;gt;Protein Data Bank in Europe: Bringing Structure to Biology, from http://www.ebi.ac.uk/pdbe/entry/pdb/2F89&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
As a bisphosphonate, Fosamax is a synthetic analog of [https://en.wikipedia.org/wiki/Pyrophosphate pyrophosphate], containing two protonated phosphorus oxyanions. Each oxyanion is attached to a hydroxyl group. In its drug form, sodium is bound in place of a carboxyl hydrogen. When in solution, Fosamax may form an ionic bond(s) with other metal cations such as magnesium. The central carbon is also attached to an -OH as well as a three-carbon chain leading up to an amino group (Fig. 2).&lt;br /&gt;
&amp;lt;StructureSection load=&#039;2f89&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;Crystal Structure of human FPPS in complex with a bisphosphonate.&#039; scene=&#039;&#039;&amp;gt; [[Image:Screen Shot 2016-12-04 at 3.21.51 PM.png|thumb|left|200px|Figure 2. Chemical structure of Fosamax (alendronate sodium).]] &lt;br /&gt;
[[Image:Screen Shot 2016-12-02 at 3.24.13 PM.png|thumb|left|400px|Figure 3. GPP/DMAPP ligand pocket of SPSS-alendronate complex indicated by yellow eclipse.]]&lt;br /&gt;
[[Image:Screen Shot 2016-12-02 at 3.33.04 PM.png|thumb|left|400px|Figure 4. Aspartate-Magnesium cation-phosphonate chelate within FPPS-alendronate complex. Pink sphere indicates Mg2+ ion; red indicates oxygen atom, yellow indicates phosphorous atom, blue (bond-line) indicates nitrogen, blue (ribbon) indicates alpha helix motif.]] [[Image:Screen Shot 2016-12-04 at 8.42.20 PM.png|thumb|left|500px|Figure 5. Comparison between the structure of the carbocation transition states of DMAPP and GPP to the nitrogen-containing bisphosphonate alendronate. Close similarity suggests that Fosamax acts as carbocation transition state analog of isoprenoid diphosphates &amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;.]]&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Mechanism of Action ==&lt;br /&gt;
Functioning as a nitrogen-containing, second generation bisphosphonate, Fosamax binds to hydroxyapatite in bone and promotes apoptosis in osteoclasts (cells specialized in skeletal breakdown) (Fig. 6), thus slowing the breakdown of bone&amp;lt;ref&amp;gt;Drake, Matthew T., Bart L. Clarke, and Sundeep Khosla. &amp;quot;Bisphosphonates: Mechanism of Action and Role in Clinical Practice.&amp;quot; Mayo Clinic Proceedings 83, no. 9 (2008): 1032-045. doi:10.4065/83.9.1032.&amp;lt;/ref&amp;gt;. In order to accomplish this, Fosamax inhibits [http://www.uniprot.org/uniprot/P14324 farnesyl pyrophosphate synthase] (FPPS), one of the enzymes found in the [https://en.wikipedia.org/wiki/Mevalonate_pathway mevalonic acid pathway], thereby reducing the production of isoprenoid compounds that are essential for post-translational modification of small guanosine triphosphate (GTP)-binding proteins (e.g. Rho, Rab and [https://pdb101.rcsb.org/motm/148 Ras])&amp;lt;ref&amp;gt;Luckman SP, Hughes DE, Coxon FP, Russell RGG, Rogers MJ. Nitrogen-Containing Biphosphonates Inhibit the Mevalonate Pathway and Prevent Post-Translational Prenylation of GTP-Binding Proteins, Including Ras. Journal of Bone and Mineral Research. 2005;20:1265–74&amp;lt;/ref&amp;gt;. By inhibiting FPPS, Fosamax discourages the successive condensation of isopentenyl pyrophosphate with dimethylallyl pyrophosphate and geranyl pyrophosphate, which interferes with osteoclast function and survival &amp;lt;ref&amp;gt;Alendronic acid. (2005, June 13), from http://www.drugbank.ca/drugs/DB00630#bond-15126&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;Fisher, J. E., Rogers, M. J., Halasy, J. M., Luckman, S. P., Hughes, D. E., Masarachia, P. J., … Reszka, A. A. (1999). Alendronate mechanism of action: geranylgeraniol, an intermediate in the mevalonate pathway, prevents inhibition of osteoclast formation, bone resorption, and kinase activation in vitro. Proceedings of the National Academy of Sciences, 96(1), 133–138. doi:10.1073/pnas.96.1.133, from http://www.pnas.org/content/96/1/133.full.pdf&amp;lt;/ref&amp;gt;. [[Image:Screen Shot 2016-12-04 at 8.23.53 PM.png|thumb|right|400px|Figure 6. Relationship between bisphosphonates and osteoclasts at individual stages of cellular life.&amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;]]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Though the exact chemical mechanism by which alendronate inhibits FPPS remains unclear, nitrogen-containing bisphosphates (&amp;lt;scene name=&#039;74/745950/Ligand/2&#039;&amp;gt;N-BP&amp;lt;/scene&amp;gt;s) bind to the geranyl pyrophosphate/dimethylallyl (GPP/DMAPP) ligand binding pocket (Fig. 3) and alter the secondary structure of the enzyme&amp;lt;ref&amp;gt;Kavanagh KL, Guo K, Dunford JE, Wu X, Knapp S, Ebetino FH, et al. The molecular mechanism of nitrogen-containing bisphosphonates as antiosteoporosis drugs. Proceedings of the National Academy of Sciences. 2006;103:7829–34&amp;lt;/ref&amp;gt;. Specifically, alendronate may bind to the FPPS allylic substrate-binding pocket by ligating the Magnesium ion center via phosphonate oxyanion nucleophilic attack&amp;lt;ref&amp;gt;Hosfield DJ, Zhang Y, Dougan DR, Broun A, Tari LW, Swanson RV, et al. Structural Basis for Bisphosphonate-mediated Inhibition of Isoprenoid Biosynthesis. Journal of Biological Chemistry. 2003;279:8526–9&amp;lt;/ref&amp;gt;. Phosphonate groups are stabilized by a cluster of three Mg2+ ions via oxyanion-metal cation charge interactions, as well as three FPPS-conserved aspartate residues located within two alpha helical motifs (&amp;lt;scene name=&#039;74/745950/Aspartates/2&#039;&amp;gt;Asp-103, 107, and 243&amp;lt;/scene&amp;gt;) that form a &amp;lt;scene name=&#039;74/745950/Correct_ligand_binding_site/7&#039;&amp;gt;magnesium-bisphosphonate chelate&amp;lt;/scene&amp;gt; (Fig. 4)&amp;lt;ref&amp;gt;Tarshis L. C., Yan M., Poulter C. D., Sacchettini J. C. (1994) Biochemistry. 33, 10871–10877. [PubMed]&amp;lt;/ref&amp;gt;. N-BPs may bind to the GPP substrate-binding site because N-BPs resemble the structure of the enzyme’s natural substrates (GPP and DMAPP) and act as carbocation transition state analogs (Fig. 5). Interactions between N-BP and amino acid residues (&amp;lt;scene name=&#039;74/745950/Lys200_thr201/3&#039;&amp;gt;Thr-201 and Lys-200&amp;lt;/scene&amp;gt;) suggest that these inhibitors position nitrogen in the carbocation-binding site, then mimic the carbocation intermediate formed via substrate ionization &amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;. By acting as a transition state analog for isoprenoid biosynthesis, Fosamax effectively increases the activation energy of a regulatory/rate-determining step in the mevalonate pathway, subsequently reducing the concentration of product molecules that aid the continuous biodegradation of skeletal tissue.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== References ==&lt;br /&gt;
&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Contributors and Editors ==&lt;br /&gt;
&lt;br /&gt;
[[User:Alyssa Jewel D. Floro|Floro, Alyssa Jewel D.]] [[User:Justin Myles Kidd|Kidd, Justin M.]] [[User:Osna M. Samady|Samady, Osna M.]]&lt;/div&gt;</summary>
		<author><name>Justin Myles Kidd</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Fosamax_(alendronate_sodium)&amp;diff=2688469</id>
		<title>Fosamax (alendronate sodium)</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Fosamax_(alendronate_sodium)&amp;diff=2688469"/>
		<updated>2016-12-05T21:55:26Z</updated>

		<summary type="html">&lt;p&gt;Justin Myles Kidd: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;scene name=&#039;74/745950/Correct_ligand_binding_site/3&#039;&amp;gt;&amp;lt;/scene&amp;gt;&amp;lt;table style=&amp;quot;width:200px; border:1px solid black; float:right; &amp;quot;&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td colspan=&amp;quot;2&amp;quot;&amp;gt;&amp;lt;center&amp;gt; FOSAMAX &amp;lt;/center&amp;gt;&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td colspan=&amp;quot;2&amp;quot;&amp;gt;&amp;lt;center&amp;gt;[[Image:Fosamax.gif|thumb|center|200px|Figure 1. Fosamax prescription drug, tablet form.]]&amp;lt;/center&amp;gt;&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Formula:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;C4H13NO7P2&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Molar Mass:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;249.097 g/mol&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;INN:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Alendronic Acid&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;USAN:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Alendronate sodium&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;IUPAC:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;4-amino-1-hydroxybutylidene) bisphosphonic acid monosodium salt trihydrate&lt;br /&gt;
&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;/table&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Fosamax (Alendronate Sodium or Alendronic Acid) is a pharmaceutical drug administered as an antiresorptive therapy agent for osteodegenerative diseases such as [https://en.wikipedia.org/wiki/Osteoporosis Osteoporosis], [https://en.wikipedia.org/wiki/Paget&#039;s_disease_of_bone Paget&#039;s disease], and [https://en.wikipedia.org/wiki/Osteogenesis_imperfecta osteogenesis imperfecta]&amp;lt;ref&amp;gt;Gong Li, Altman Russ B, Klein Teri E . &amp;quot;Bisphosphonates pathway&amp;quot; Pharmacogenetics and genomics (2011). from https://www.pharmgkb.org/pathway/PA154423660&amp;lt;/ref&amp;gt;.&lt;br /&gt;
Functioning as a nitrogen-containing, second generation [https://en.wikipedia.org/wiki/Bisphosphonate bisphosphonate], Fosamax binds to [https://en.wikipedia.org/wiki/Hydroxylapatite hydroxyapatite] in bone and promotes [https://en.wikipedia.org/wiki/Apoptosis apoptosis] in [https://en.wikipedia.org/wiki/Osteoclast osteoclasts] (cells specialized in skeletal breakdown), thereby delaying the degradation of bone tissue. While incorporated in bone matrix, alendronate is not pharmacologically active, thus, it must be continuously administered to suppress osteoclasts on newly formed resorption surfaces &amp;lt;ref&amp;gt;Fosamax: Uses, Dosage &amp;amp; Side Effects - Drugs.com. (2016, November 3).Fosamax: Uses, Dosage &amp;amp; Side Effects - Drugs.com. Retrieved November 14, 2016, from https://www.drugs.com/fosamax.html&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
== History &amp;lt;ref&amp;gt;Fosamax (alendronate sodium). Fosamax New FDA Drug Approval | CenterWatch. Merck. Retrieved November 15, 2016, from http://www.centerwatch.com/drug-information/fda-approved-drugs/drug/26/fosamax-alendronate-sodium&amp;lt;/ref&amp;gt;==&lt;br /&gt;
Fosamax has been in use since September 29, 1995 after gaining [http://google2.fda.gov/search?q=fosamax&amp;amp;client=FDAgov&amp;amp;site=FDAgov&amp;amp;lr=&amp;amp;proxystylesheet=FDAgov&amp;amp;requiredfields=-archive%3AYes&amp;amp;output=xml_no_dtd&amp;amp;getfields=* Food and Drug Administration] (FDA) approval. The drug obtained FDA clearance based on data from five clinical trials, lasting two years, involving 1,827 postmenopausal women with osteoporosis in 16 different countries. The trials showed a significant increase in bone mineral density at the spine, hip, and other sites. Overall, the drug reduced the number of women with new spinal fractures by 48%, the total number of new spinal fractures by 63%, and reduced overall height loss by 35%. Today, the drug remains in circulation in caplet and liquid forms and attainable at most pharmaceutical distribution centers with an eligible prescription. &lt;br /&gt;
&lt;br /&gt;
== Side Effects &amp;lt;ref&amp;gt;Common Side Effects of Fosamax (Alendronate Sodium) Drug Center - RxList. (2015, August 26). RxList. Retrieved November 14, 2016, from  http://www.rxlist.com/fosamax-side-effects-drug-center.htm&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
Common side effects of Fosamax include gas, constipation, heartburn, diarrhea, bloating, nausea, vomiting, stomach pain, joint pain or swelling, swelling in your hands or feet, dizziness, headache, eye pain, back pain, or weakness.&lt;br /&gt;
Serious side effects of Fosamax include severe pain (joints, bone, muscle, jaw, back or heartburn), chest pain, difficulty swallowing, bloody stools, eye pain, skin blisters, and swelling of the face, tongue, or throat. &lt;br /&gt;
&lt;br /&gt;
== Structural Highlights &amp;lt;ref&amp;gt;Protein Data Bank in Europe: Bringing Structure to Biology, from http://www.ebi.ac.uk/pdbe/entry/pdb/2F89&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
As a bisphosphonate, Fosamax is a synthetic analog of [https://en.wikipedia.org/wiki/Pyrophosphate pyrophosphate], containing two protonated phosphorus oxyanions. Each oxyanion is attached to a hydroxyl group. In its drug form, sodium is bound in place of a carboxyl hydrogen. When in solution, Fosamax may form an ionic bond(s) with other metal cations such as magnesium. The central carbon is also attached to an -OH as well as a three-carbon chain leading up to an amino group (Fig. 2).&lt;br /&gt;
&amp;lt;StructureSection load=&#039;2f89&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;Crystal Structure of human FPPS in complex with a bisphosphonate.&#039; scene=&#039;&#039;&amp;gt; [[Image:Screen Shot 2016-12-04 at 3.21.51 PM.png|thumb|left|200px|Figure 2. Chemical structure of Fosamax (alendronate sodium).]] &lt;br /&gt;
[[Image:Screen Shot 2016-12-02 at 3.24.13 PM.png|thumb|left|400px|Figure 3. GPP/DMAPP ligand pocket of SPSS-alendronate complex indicated by yellow eclipse.]]&lt;br /&gt;
[[Image:Screen Shot 2016-12-02 at 3.33.04 PM.png|thumb|left|400px|Figure 4. Aspartate-Magnesium cation-phosphonate chelate within FPPS-alendronate complex. Pink sphere indicates Mg2+ ion; red indicates oxygen atom, yellow indicates phosphorous atom, blue (bond-line) indicates nitrogen, blue (ribbon) indicates alpha helix motif.]] [[Image:Screen Shot 2016-12-04 at 8.42.20 PM.png|thumb|left|500px|Figure 5. Comparison between the structure of the carbocation transition states of DMAPP and GPP to the nitrogen-containing bisphosphonate alendronate. Close similarity suggests that Fosamax acts as carbocation transition state analog of isoprenoid diphosphates &amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;.]]&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Mechanism of Action ==&lt;br /&gt;
Functioning as a nitrogen-containing, second generation bisphosphonate, Fosamax binds to hydroxyapatite in bone and promotes apoptosis in osteoclasts (cells specialized in skeletal breakdown) (Fig. 6), thus slowing the breakdown of bone&amp;lt;ref&amp;gt;Drake, Matthew T., Bart L. Clarke, and Sundeep Khosla. &amp;quot;Bisphosphonates: Mechanism of Action and Role in Clinical Practice.&amp;quot; Mayo Clinic Proceedings 83, no. 9 (2008): 1032-045. doi:10.4065/83.9.1032.&amp;lt;/ref&amp;gt;. In order to accomplish this, Fosamax inhibits [http://www.uniprot.org/uniprot/P14324 farnesyl pyrophosphate synthase] (FPPS), one of the enzymes found in the [https://en.wikipedia.org/wiki/Mevalonate_pathway mevalonic acid pathway], thereby reducing the production of isoprenoid compounds that are essential for post-translational modification of small guanosine triphosphate (GTP)-binding proteins (e.g. Rho, Rab and [https://pdb101.rcsb.org/motm/148 Ras])&amp;lt;ref&amp;gt;Luckman SP, Hughes DE, Coxon FP, Russell RGG, Rogers MJ. Nitrogen-Containing Biphosphonates Inhibit the Mevalonate Pathway and Prevent Post-Translational Prenylation of GTP-Binding Proteins, Including Ras. Journal of Bone and Mineral Research. 2005;20:1265–74&amp;lt;/ref&amp;gt;. By inhibiting FPPS, Fosamax discourages the successive condensation of isopentenyl pyrophosphate with dimethylallyl pyrophosphate and geranyl pyrophosphate, which interferes with osteoclast function and survival &amp;lt;ref&amp;gt;Alendronic acid. (2005, June 13), from http://www.drugbank.ca/drugs/DB00630#bond-15126&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;Fisher, J. E., Rogers, M. J., Halasy, J. M., Luckman, S. P., Hughes, D. E., Masarachia, P. J., … Reszka, A. A. (1999). Alendronate mechanism of action: geranylgeraniol, an intermediate in the mevalonate pathway, prevents inhibition of osteoclast formation, bone resorption, and kinase activation in vitro. Proceedings of the National Academy of Sciences, 96(1), 133–138. doi:10.1073/pnas.96.1.133, from http://www.pnas.org/content/96/1/133.full.pdf&amp;lt;/ref&amp;gt;. [[Image:Screen Shot 2016-12-04 at 8.23.53 PM.png|thumb|right|400px|Figure 6. Relationship between bisphosphonates and osteoclasts at individual stages of cellular life.&amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;]]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Though the exact chemical mechanism by which alendronate inhibits FPPS remains unclear, nitrogen-containing bisphosphates (&amp;lt;scene name=&#039;74/745950/Ligand/2&#039;&amp;gt;N-BP&amp;lt;/scene&amp;gt;s) bind to the geranyl pyrophosphate/dimethylallyl (GPP/DMAPP) ligand binding pocket (Fig. 3) and alter the secondary structure of the enzyme&amp;lt;ref&amp;gt;Kavanagh KL, Guo K, Dunford JE, Wu X, Knapp S, Ebetino FH, et al. The molecular mechanism of nitrogen-containing bisphosphonates as antiosteoporosis drugs. Proceedings of the National Academy of Sciences. 2006;103:7829–34&amp;lt;/ref&amp;gt;. Specifically, alendronate may bind to the FPPS allylic substrate-binding pocket by ligating the Magnesium ion center via phosphonate oxyanion nucleophilic attack&amp;lt;ref&amp;gt;Hosfield DJ, Zhang Y, Dougan DR, Broun A, Tari LW, Swanson RV, et al. Structural Basis for Bisphosphonate-mediated Inhibition of Isoprenoid Biosynthesis. Journal of Biological Chemistry. 2003;279:8526–9&amp;lt;/ref&amp;gt;. Phosphonate groups are stabilized by a cluster of three Mg2+ ions via oxyanion-metal cation charge interactions, as well as three FPPS-conserved aspartate residues located within two alpha helical motifs (&amp;lt;scene name=&#039;74/745950/Aspartates/2&#039;&amp;gt;Asp-103, 107, and 243&amp;lt;/scene&amp;gt;) that form a &amp;lt;scene name=&#039;74/745950/Correct_ligand_binding_site/7&#039;&amp;gt;magnesium-bisphosphonate chelate&amp;lt;/scene&amp;gt; (Fig. 4)&amp;lt;ref&amp;gt;Tarshis L. C., Yan M., Poulter C. D., Sacchettini J. C. Biochemistry. 1994;33:10871–10877. [PubMed]&amp;lt;/ref&amp;gt;. N-BPs may bind to the GPP substrate-binding site because N-BPs resemble the structure of the enzyme’s natural substrates (GPP and DMAPP) and act as carbocation transition state analogs (Fig. 5). Interactions between N-BP and amino acid residues (&amp;lt;scene name=&#039;74/745950/Lys200_thr201/3&#039;&amp;gt;Thr-201 and Lys-200&amp;lt;/scene&amp;gt;) suggest that these inhibitors position nitrogen in the carbocation-binding site, then mimic the carbocation intermediate formed via substrate ionization &amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;. By acting as a transition state analog for isoprenoid biosynthesis, Fosamax effectively increases the activation energy of a regulatory/rate-determining step in the mevalonate pathway, subsequently reducing the concentration of product molecules that aid the continuous biodegradation of skeletal tissue.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== References ==&lt;br /&gt;
&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Contributors and Editors ==&lt;br /&gt;
&lt;br /&gt;
[[User:Alyssa Jewel D. Floro|Floro, Alyssa Jewel D.]] [[User:Justin Myles Kidd|Kidd, Justin M.]] [[User:Osna M. Samady|Samady, Osna M.]]&lt;/div&gt;</summary>
		<author><name>Justin Myles Kidd</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Fosamax_(alendronate_sodium)&amp;diff=2688467</id>
		<title>Fosamax (alendronate sodium)</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Fosamax_(alendronate_sodium)&amp;diff=2688467"/>
		<updated>2016-12-05T21:53:01Z</updated>

		<summary type="html">&lt;p&gt;Justin Myles Kidd: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;scene name=&#039;74/745950/Correct_ligand_binding_site/3&#039;&amp;gt;&amp;lt;/scene&amp;gt;&amp;lt;table style=&amp;quot;width:200px; border:1px solid black; float:right; &amp;quot;&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td colspan=&amp;quot;2&amp;quot;&amp;gt;&amp;lt;center&amp;gt; FOSAMAX &amp;lt;/center&amp;gt;&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td colspan=&amp;quot;2&amp;quot;&amp;gt;&amp;lt;center&amp;gt;[[Image:Fosamax.gif|thumb|center|200px|Figure 1. Fosamax prescription drug, tablet form.]]&amp;lt;/center&amp;gt;&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Formula:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;C4H13NO7P2&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Molar Mass:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;249.097 g/mol&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;INN:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Alendronic Acid&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;USAN:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Alendronate sodium&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;IUPAC:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;4-amino-1-hydroxybutylidene) bisphosphonic acid monosodium salt trihydrate&lt;br /&gt;
&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;/table&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Fosamax (Alendronate Sodium or Alendronic Acid) is a pharmaceutical drug administered as an antiresorptive therapy agent for osteodegenerative diseases such as [https://en.wikipedia.org/wiki/Osteoporosis Osteoporosis], [https://en.wikipedia.org/wiki/Paget&#039;s_disease_of_bone Paget&#039;s disease], and [https://en.wikipedia.org/wiki/Osteogenesis_imperfecta osteogenesis imperfecta]&amp;lt;ref&amp;gt;Gong Li, Altman Russ B, Klein Teri E . &amp;quot;Bisphosphonates pathway&amp;quot; Pharmacogenetics and genomics (2011). from https://www.pharmgkb.org/pathway/PA154423660&amp;lt;/ref&amp;gt;.&lt;br /&gt;
Functioning as a nitrogen-containing, second generation [https://en.wikipedia.org/wiki/Bisphosphonate bisphosphonate], Fosamax binds to [https://en.wikipedia.org/wiki/Hydroxylapatite hydroxyapatite] in bone and promotes [https://en.wikipedia.org/wiki/Apoptosis apoptosis] in [https://en.wikipedia.org/wiki/Osteoclast osteoclasts] (cells specialized in skeletal breakdown), thereby delaying the degradation of bone tissue. While incorporated in bone matrix, alendronate is not pharmacologically active, thus, it must be continuously administered to suppress osteoclasts on newly formed resorption surfaces &amp;lt;ref&amp;gt;Fosamax: Uses, Dosage &amp;amp; Side Effects - Drugs.com. (2016, November 3).Fosamax: Uses, Dosage &amp;amp; Side Effects - Drugs.com. Retrieved November 14, 2016, from https://www.drugs.com/fosamax.html&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
== History &amp;lt;ref&amp;gt;Fosamax (alendronate sodium). Fosamax New FDA Drug Approval | CenterWatch. Merck. Retrieved November 15, 2016, from http://www.centerwatch.com/drug-information/fda-approved-drugs/drug/26/fosamax-alendronate-sodium&amp;lt;/ref&amp;gt;==&lt;br /&gt;
Fosamax has been in use since September 29, 1995 after gaining [http://google2.fda.gov/search?q=fosamax&amp;amp;client=FDAgov&amp;amp;site=FDAgov&amp;amp;lr=&amp;amp;proxystylesheet=FDAgov&amp;amp;requiredfields=-archive%3AYes&amp;amp;output=xml_no_dtd&amp;amp;getfields=* Food and Drug Administration] (FDA) approval. The drug obtained FDA clearance based on data from five clinical trials, lasting two years, involving 1,827 postmenopausal women with osteoporosis in 16 different countries. The trials showed a significant increase in bone mineral density at the spine, hip, and other sites. Overall, the drug reduced the number of women with new spinal fractures by 48%, the total number of new spinal fractures by 63%, and reduced overall height loss by 35%. Today, the drug remains in circulation in caplet and liquid forms and attainable at most pharmaceutical distribution centers with an eligible prescription. &lt;br /&gt;
&lt;br /&gt;
== Side Effects &amp;lt;ref&amp;gt;Common Side Effects of Fosamax (Alendronate Sodium) Drug Center - RxList. (2015, August 26). RxList. Retrieved November 14, 2016, from  http://www.rxlist.com/fosamax-side-effects-drug-center.htm&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
Common side effects of Fosamax include gas, constipation, heartburn, diarrhea, bloating, nausea, vomiting, stomach pain, joint pain or swelling, swelling in your hands or feet, dizziness, headache, eye pain, back pain, or weakness.&lt;br /&gt;
Serious side effects of Fosamax include severe pain (joints, bone, muscle, jaw, back or heartburn), chest pain, difficulty swallowing, bloody stools, eye pain, skin blisters, and swelling of the face, tongue, or throat. &lt;br /&gt;
&lt;br /&gt;
== Structural Highlights &amp;lt;ref&amp;gt;Protein Data Bank in Europe: Bringing Structure to Biology, from http://www.ebi.ac.uk/pdbe/entry/pdb/2F89&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
As a bisphosphonate, Fosamax is a synthetic analog of [https://en.wikipedia.org/wiki/Pyrophosphate pyrophosphate], containing two protonated phosphorus oxyanions. Each oxyanion is attached to a hydroxyl group. In its drug form, sodium is bound in place of a carboxyl hydrogen. When in solution, Fosamax may form an ionic bond(s) with other metal cations such as magnesium. The central carbon is also attached to an -OH as well as a three-carbon chain leading up to an amino group (Fig. 2).&lt;br /&gt;
&amp;lt;StructureSection load=&#039;2f89&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;Crystal Structure of human FPPS in complex with a bisphosphonate.&#039; scene=&#039;&#039;&amp;gt; [[Image:Screen Shot 2016-12-04 at 3.21.51 PM.png|thumb|left|200px|Figure 2. Chemical structure of Fosamax (alendronate sodium).]] &lt;br /&gt;
[[Image:Screen Shot 2016-12-02 at 3.24.13 PM.png|thumb|left|400px|Figure 3. GPP/DMAPP ligand pocket of SPSS-alendronate complex indicated by yellow eclipse.]]&lt;br /&gt;
[[Image:Screen Shot 2016-12-02 at 3.33.04 PM.png|thumb|left|400px|Figure 4. Aspartate-Magnesium cation-phosphonate chelate within FPPS-alendronate complex. Pink sphere indicates Mg2+ ion; red indicates oxygen atom, yellow indicates phosphorous atom, blue (bond-line) indicates nitrogen, blue (ribbon) indicates alpha helix motif.]] [[Image:Screen Shot 2016-12-04 at 8.42.20 PM.png|thumb|left|500px|Figure 5. Comparison between the structure of the carbocation transition states of DMAPP and GPP to the nitrogen-containing bisphosphonate alendronate. Close similarity suggests that Fosamax acts as carbocation transition state analog of isoprenoid diphosphates &amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;.]]&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Mechanism of Action ==&lt;br /&gt;
Functioning as a nitrogen-containing, second generation bisphosphonate, Fosamax binds to hydroxyapatite in bone and promotes apoptosis in osteoclasts (cells specialized in skeletal breakdown) (Fig. 6), thus slowing the breakdown of bone&amp;lt;ref&amp;gt;Drake, Matthew T., Bart L. Clarke, and Sundeep Khosla. &amp;quot;Bisphosphonates: Mechanism of Action and Role in Clinical Practice.&amp;quot; Mayo Clinic Proceedings 83, no. 9 (2008): 1032-045. doi:10.4065/83.9.1032.&amp;lt;/ref&amp;gt;. In order to accomplish this, Fosamax inhibits [http://www.uniprot.org/uniprot/P14324 farnesyl pyrophosphate synthase] (FPPS), one of the enzymes found in the [https://en.wikipedia.org/wiki/Mevalonate_pathway mevalonic acid pathway], thereby reducing the production of isoprenoid compounds that are essential for post-translational modification of small guanosine triphosphate (GTP)-binding proteins (e.g. Rho, Rab and [https://pdb101.rcsb.org/motm/148 Ras])&amp;lt;ref&amp;gt;Luckman SP, Hughes DE, Coxon FP, Russell RGG, Rogers MJ. Nitrogen-Containing Biphosphonates Inhibit the Mevalonate Pathway and Prevent Post-Translational Prenylation of GTP-Binding Proteins, Including Ras. Journal of Bone and Mineral Research. 2005;20:1265–74&amp;lt;/ref&amp;gt;. By inhibiting FPPS, Fosamax discourages the successive condensation of isopentenyl pyrophosphate with dimethylallyl pyrophosphate and geranyl pyrophosphate, which interferes with osteoclast function and survival &amp;lt;ref&amp;gt;Alendronic acid. (2005, June 13), from http://www.drugbank.ca/drugs/DB00630#bond-15126&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;Fisher, J. E., Rogers, M. J., Halasy, J. M., Luckman, S. P., Hughes, D. E., Masarachia, P. J., … Reszka, A. A. (1999). Alendronate mechanism of action: geranylgeraniol, an intermediate in the mevalonate pathway, prevents inhibition of osteoclast formation, bone resorption, and kinase activation in vitro. Proceedings of the National Academy of Sciences, 96(1), 133–138. doi:10.1073/pnas.96.1.133, from http://www.pnas.org/content/96/1/133.full.pdf&amp;lt;/ref&amp;gt;. [[Image:Screen Shot 2016-12-04 at 8.23.53 PM.png|thumb|right|400px|Figure 6. Relationship between bisphosphonates and osteoclasts at individual stages of cellular life.&amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;]]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Though the exact chemical mechanism by which alendronate inhibits FPPS remains unclear, nitrogen-containing bisphosphates (&amp;lt;scene name=&#039;74/745950/Ligand/2&#039;&amp;gt;N-BP&amp;lt;/scene&amp;gt;s) bind to the geranyl pyrophosphate/dimethylallyl (GPP/DMAPP) ligand binding pocket (Fig. 3) and alter the secondary structure of the enzyme&amp;lt;ref&amp;gt;Kavanagh KL, Guo K, Dunford JE, Wu X, Knapp S, Ebetino FH, et al. The molecular mechanism of nitrogen-containing bisphosphonates as antiosteoporosis drugs. Proceedings of the National Academy of Sciences. 2006;103:7829–34&amp;lt;/ref&amp;gt;. Specifically, alendronate may bind to the FPPS allylic substrate-binding pocket by ligating the Magnesium ion center via phosphonate oxyanion nucleophilic attack&amp;lt;ref&amp;gt;Hosfield DJ, Zhang Y, Dougan DR, Broun A, Tari LW, Swanson RV, et al. Structural Basis for Bisphosphonate-mediated Inhibition of Isoprenoid Biosynthesis. Journal of Biological Chemistry. 2003;279:8526–9&amp;lt;/ref&amp;gt;. Phosphonate groups are stabilized by a cluster of three Mg2+ ions via oxyanion-metal cation charge interactions, as well as three FPPS-conserved aspartate residues located within two alpha helical motifs (&amp;lt;scene name=&#039;74/745950/Aspartates/2&#039;&amp;gt;Asp-103, 107, and 243&amp;lt;/scene&amp;gt;) that form a &amp;lt;scene name=&#039;74/745950/Correct_ligand_binding_site/7&#039;&amp;gt;ligand-bisphosphonate chelate&amp;lt;/scene&amp;gt; (Fig. 4)&amp;lt;ref&amp;gt;Tarshis L. C., Yan M., Poulter C. D., Sacchettini J. C. Biochemistry. 1994;33:10871–10877. [PubMed]&amp;lt;/ref&amp;gt;. N-BPs may bind to the GPP substrate-binding site because N-BPs resemble the structure of the enzyme’s natural substrates (GPP and DMAPP) and act as carbocation transition state analogs (Fig. 5). Interactions between N-BP and amino acid residues (&amp;lt;scene name=&#039;74/745950/Lys200_thr201/3&#039;&amp;gt;Thr-201 and Lys-200&amp;lt;/scene&amp;gt;) suggest that these inhibitors position nitrogen in the carbocation-binding site, then mimic the carbocation intermediate formed via substrate ionization &amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;. By acting as a transition state analog for isoprenoid biosynthesis, Fosamax effectively increases the activation energy of a regulatory/rate-determining step in the mevalonate pathway, subsequently reducing the concentration of product molecules that aid the continuous biodegradation of skeletal tissue.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== References ==&lt;br /&gt;
&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Contributors and Editors ==&lt;br /&gt;
&lt;br /&gt;
[[User:Alyssa Jewel D. Floro|Floro, Alyssa Jewel D.]] [[User:Justin Myles Kidd|Kidd, Justin M.]] [[User:Osna M. Samady|Samady, Osna M.]]&lt;/div&gt;</summary>
		<author><name>Justin Myles Kidd</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Fosamax_(alendronate_sodium)&amp;diff=2688465</id>
		<title>Fosamax (alendronate sodium)</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Fosamax_(alendronate_sodium)&amp;diff=2688465"/>
		<updated>2016-12-05T21:42:06Z</updated>

		<summary type="html">&lt;p&gt;Justin Myles Kidd: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;scene name=&#039;74/745950/Correct_ligand_binding_site/3&#039;&amp;gt;&amp;lt;/scene&amp;gt;&amp;lt;table style=&amp;quot;width:200px; border:1px solid black; float:right; &amp;quot;&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td colspan=&amp;quot;2&amp;quot;&amp;gt;&amp;lt;center&amp;gt; FOSAMAX &amp;lt;/center&amp;gt;&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td colspan=&amp;quot;2&amp;quot;&amp;gt;&amp;lt;center&amp;gt;[[Image:Fosamax.gif|thumb|center|200px|Figure 1. Fosamax prescription drug, tablet form.]]&amp;lt;/center&amp;gt;&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Formula:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;C4H13NO7P2&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Molar Mass:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;249.097 g/mol&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;INN:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Alendronic Acid&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;USAN:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Alendronate sodium&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;IUPAC:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;4-amino-1-hydroxybutylidene) bisphosphonic acid monosodium salt trihydrate&lt;br /&gt;
&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;/table&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Fosamax (Alendronate Sodium or Alendronic Acid) is a pharmaceutical drug administered as an antiresorptive therapy agent for osteodegenerative diseases such as [https://en.wikipedia.org/wiki/Osteoporosis Osteoporosis], [https://en.wikipedia.org/wiki/Paget&#039;s_disease_of_bone Paget&#039;s disease], and [https://en.wikipedia.org/wiki/Osteogenesis_imperfecta osteogenesis imperfecta]&amp;lt;ref&amp;gt;Gong Li, Altman Russ B, Klein Teri E . &amp;quot;Bisphosphonates pathway&amp;quot; Pharmacogenetics and genomics (2011). from https://www.pharmgkb.org/pathway/PA154423660&amp;lt;/ref&amp;gt;.&lt;br /&gt;
Functioning as a nitrogen-containing, second generation [https://en.wikipedia.org/wiki/Bisphosphonate bisphosphonate], Fosamax binds to [https://en.wikipedia.org/wiki/Hydroxylapatite hydroxyapatite] in bone and promotes [https://en.wikipedia.org/wiki/Apoptosis apoptosis] in [https://en.wikipedia.org/wiki/Osteoclast osteoclasts] (cells specialized in skeletal breakdown), thereby delaying the degradation of bone tissue. While incorporated in bone matrix, alendronate is not pharmacologically active, thus, it must be continuously administered to suppress osteoclasts on newly formed resorption surfaces &amp;lt;ref&amp;gt;Fosamax: Uses, Dosage &amp;amp; Side Effects - Drugs.com. (2016, November 3).Fosamax: Uses, Dosage &amp;amp; Side Effects - Drugs.com. Retrieved November 14, 2016, from https://www.drugs.com/fosamax.html&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
== History &amp;lt;ref&amp;gt;Fosamax (alendronate sodium). Fosamax New FDA Drug Approval | CenterWatch. Merck. Retrieved November 15, 2016, from http://www.centerwatch.com/drug-information/fda-approved-drugs/drug/26/fosamax-alendronate-sodium&amp;lt;/ref&amp;gt;==&lt;br /&gt;
Fosamax has been in use since September 29, 1995 after gaining [http://google2.fda.gov/search?q=fosamax&amp;amp;client=FDAgov&amp;amp;site=FDAgov&amp;amp;lr=&amp;amp;proxystylesheet=FDAgov&amp;amp;requiredfields=-archive%3AYes&amp;amp;output=xml_no_dtd&amp;amp;getfields=* Food and Drug Administration] (FDA) approval. The drug obtained FDA clearance based on data from five clinical trials, lasting two years, involving 1,827 postmenopausal women with osteoporosis in 16 different countries. The trials showed a significant increase in bone mineral density at the spine, hip, and other sites. Overall, the drug reduced the number of women with new spinal fractures by 48%, the total number of new spinal fractures by 63%, and reduced overall height loss by 35%. Today, the drug remains in circulation in caplet and liquid forms and attainable at most pharmaceutical distribution centers with an eligible prescription. &lt;br /&gt;
&lt;br /&gt;
== Side Effects &amp;lt;ref&amp;gt;Common Side Effects of Fosamax (Alendronate Sodium) Drug Center - RxList. (2015, August 26). RxList. Retrieved November 14, 2016, from  http://www.rxlist.com/fosamax-side-effects-drug-center.htm&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
Common side effects of Fosamax include gas, constipation, heartburn, diarrhea, bloating, nausea, vomiting, stomach pain, joint pain or swelling, swelling in your hands or feet, dizziness, headache, eye pain, back pain, or weakness.&lt;br /&gt;
Serious side effects of Fosamax include severe pain (joints, bone, muscle, jaw, back or heartburn), chest pain, difficulty swallowing, bloody stools, eye pain, skin blisters, and swelling of the face, tongue, or throat. &lt;br /&gt;
&lt;br /&gt;
== Structural Highlights &amp;lt;ref&amp;gt;Protein Data Bank in Europe: Bringing Structure to Biology, from http://www.ebi.ac.uk/pdbe/entry/pdb/2F89&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
As a bisphosphonate, Fosamax is a synthetic analog of [https://en.wikipedia.org/wiki/Pyrophosphate pyrophosphate], containing two protonated phosphorus oxyanions. Each oxyanion is attached to a hydroxyl group. In its drug form, sodium is bound in place of a carboxyl hydrogen. When in solution, Fosamax may form an ionic bond(s) with other metal cations such as magnesium. The central carbon is also attached to an -OH as well as a three-carbon chain leading up to an amino group (Fig. 2).&lt;br /&gt;
&amp;lt;StructureSection load=&#039;2f89&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;Crystal Structure of human FPPS in complex with a bisphosphonate.&#039; scene=&#039;&#039;&amp;gt; [[Image:Screen Shot 2016-12-04 at 3.21.51 PM.png|thumb|left|200px|Figure 2. Chemical structure of Fosamax (alendronate sodium).]] &lt;br /&gt;
[[Image:Screen Shot 2016-12-02 at 3.24.13 PM.png|thumb|left|400px|Figure 3. GPP/DMAPP ligand pocket of SPSS-alendronate complex indicated by yellow eclipse.]]&lt;br /&gt;
[[Image:Screen Shot 2016-12-02 at 3.33.04 PM.png|thumb|left|400px|Figure 4. Aspartate-Magnesium cation-phosphonate chelate within FPPS-alendronate complex. Pink sphere indicates Mg2+ ion; red indicates oxygen atom, yellow indicates phosphorous atom, blue (bond-line) indicates nitrogen, blue (ribbon) indicates alpha helix motif.]] [[Image:Screen Shot 2016-12-04 at 8.42.20 PM.png|thumb|left|500px|Figure 5. Comparison between the structure of the carbocation transition states of DMAPP and GPP to the nitrogen-containing bisphosphonate alendronate. Close similarity suggests that Fosamax acts as carbocation transition state analog of isoprenoid diphosphates &amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;.]]&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Mechanism of Action ==&lt;br /&gt;
Functioning as a nitrogen-containing, second generation bisphosphonate, Fosamax binds to hydroxyapatite in bone and promotes apoptosis in osteoclasts (cells specialized in skeletal breakdown) (Fig. 6), thus slowing the breakdown of bone&amp;lt;ref&amp;gt;Drake, Matthew T., Bart L. Clarke, and Sundeep Khosla. &amp;quot;Bisphosphonates: Mechanism of Action and Role in Clinical Practice.&amp;quot; Mayo Clinic Proceedings 83, no. 9 (2008): 1032-045. doi:10.4065/83.9.1032.&amp;lt;/ref&amp;gt;. In order to accomplish this, Fosamax inhibits [http://www.uniprot.org/uniprot/P14324 farnesyl pyrophosphate synthase] (FPPS), one of the enzymes found in the [https://en.wikipedia.org/wiki/Mevalonate_pathway mevalonic acid pathway], thereby reducing the production of isoprenoid compounds that are essential for post-translational modification of small guanosine triphosphate (GTP)-binding proteins (e.g. Rho, Rab and [https://pdb101.rcsb.org/motm/148 Ras])&amp;lt;ref&amp;gt;Luckman SP, Hughes DE, Coxon FP, Russell RGG, Rogers MJ. Nitrogen-Containing Biphosphonates Inhibit the Mevalonate Pathway and Prevent Post-Translational Prenylation of GTP-Binding Proteins, Including Ras. Journal of Bone and Mineral Research. 2005;20:1265–74&amp;lt;/ref&amp;gt;. By inhibiting FPPS, Fosamax discourages the successive condensation of isopentenyl pyrophosphate with dimethylallyl pyrophosphate and geranyl pyrophosphate, which interferes with osteoclast function and survival &amp;lt;ref&amp;gt;Alendronic acid. (2005, June 13), from http://www.drugbank.ca/drugs/DB00630#bond-15126&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;Fisher, J. E., Rogers, M. J., Halasy, J. M., Luckman, S. P., Hughes, D. E., Masarachia, P. J., … Reszka, A. A. (1999). Alendronate mechanism of action: geranylgeraniol, an intermediate in the mevalonate pathway, prevents inhibition of osteoclast formation, bone resorption, and kinase activation in vitro. Proceedings of the National Academy of Sciences, 96(1), 133–138. doi:10.1073/pnas.96.1.133, from http://www.pnas.org/content/96/1/133.full.pdf&amp;lt;/ref&amp;gt;. [[Image:Screen Shot 2016-12-04 at 8.23.53 PM.png|thumb|right|400px|Figure 6. Relationship between bisphosphonates and osteoclasts at individual stages of cellular life.&amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;]]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Though the exact chemical mechanism by which alendronate inhibits FPPS remains unclear, nitrogen-containing bisphosphates (&amp;lt;scene name=&#039;74/745950/Ligand/2&#039;&amp;gt;N-BP&amp;lt;/scene&amp;gt;s) bind to the geranyl pyrophosphate/dimethylallyl &amp;lt;scene name=&#039;74/745950/Correct_ligand_binding_site/7&#039;&amp;gt;(GPP/DMAPP) ligand binding pocket&amp;lt;/scene&amp;gt; (Fig. 3) and alter the secondary structure of the enzyme&amp;lt;ref&amp;gt;Kavanagh KL, Guo K, Dunford JE, Wu X, Knapp S, Ebetino FH, et al. The molecular mechanism of nitrogen-containing bisphosphonates as antiosteoporosis drugs. Proceedings of the National Academy of Sciences. 2006;103:7829–34&amp;lt;/ref&amp;gt;. Specifically, alendronate may bind to the FPPS allylic substrate-binding pocket by ligating the Magnesium ion center via phosphonate oxyanion nucleophilic attack&amp;lt;ref&amp;gt;Hosfield DJ, Zhang Y, Dougan DR, Broun A, Tari LW, Swanson RV, et al. Structural Basis for Bisphosphonate-mediated Inhibition of Isoprenoid Biosynthesis. Journal of Biological Chemistry. 2003;279:8526–9&amp;lt;/ref&amp;gt;. Phosphonate groups are stabilized by a cluster of three Mg2+ ions via oxyanion-metal cation charge interactions, as well as three FPPS-conserved aspartate residues located within two alpha helical motifs (&amp;lt;scene name=&#039;74/745950/Aspartates/2&#039;&amp;gt;Asp-103, 107, and 243&amp;lt;/scene&amp;gt;) that form a ligand-bisphosphonate chelate (Fig. 4)&amp;lt;ref&amp;gt;Tarshis L. C., Yan M., Poulter C. D., Sacchettini J. C. Biochemistry. 1994;33:10871–10877. [PubMed]&amp;lt;/ref&amp;gt;. N-BPs may bind to the GPP substrate-binding site because N-BPs resemble the structure of the enzyme’s natural substrates (GPP and DMAPP) and act as carbocation transition state analogs (Fig. 5). Interactions between N-BP and amino acid residues (&amp;lt;scene name=&#039;74/745950/Lys200_thr201/3&#039;&amp;gt;Thr-201 and Lys-200&amp;lt;/scene&amp;gt;) suggest that these inhibitors position nitrogen in the carbocation-binding site, then mimic the carbocation intermediate formed via substrate ionization &amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;. By acting as a transition state analog for isoprenoid biosynthesis, Fosamax effectively increases the activation energy of a regulatory/rate-determining step in the mevalonate pathway, subsequently reducing the concentration of product molecules that aid the continuous biodegradation of skeletal tissue.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== References ==&lt;br /&gt;
&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Contributors and Editors ==&lt;br /&gt;
&lt;br /&gt;
[[User:Alyssa Jewel D. Floro|Floro, Alyssa Jewel D.]] [[User:Justin Myles Kidd|Kidd, Justin M.]] [[User:Osna M. Samady|Samady, Osna M.]]&lt;/div&gt;</summary>
		<author><name>Justin Myles Kidd</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Fosamax_(alendronate_sodium)&amp;diff=2688463</id>
		<title>Fosamax (alendronate sodium)</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Fosamax_(alendronate_sodium)&amp;diff=2688463"/>
		<updated>2016-12-05T21:37:54Z</updated>

		<summary type="html">&lt;p&gt;Justin Myles Kidd: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;scene name=&#039;74/745950/Correct_ligand_binding_site/3&#039;&amp;gt;&amp;lt;/scene&amp;gt;&amp;lt;table style=&amp;quot;width:200px; border:1px solid black; float:right; &amp;quot;&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td colspan=&amp;quot;2&amp;quot;&amp;gt;&amp;lt;center&amp;gt; FOSAMAX &amp;lt;/center&amp;gt;&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td colspan=&amp;quot;2&amp;quot;&amp;gt;&amp;lt;center&amp;gt;[[Image:Fosamax.gif|thumb|center|200px|Figure 1. Fosamax prescription drug, tablet form.]]&amp;lt;/center&amp;gt;&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Formula:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;C4H13NO7P2&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Molar Mass:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;249.097 g/mol&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;INN:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Alendronic Acid&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;USAN:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Alendronate sodium&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;IUPAC:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;4-amino-1-hydroxybutylidene) bisphosphonic acid monosodium salt trihydrate&lt;br /&gt;
&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;/table&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Fosamax (Alendronate Sodium or Alendronic Acid) is a pharmaceutical drug administered as an antiresorptive therapy agent for osteodegenerative diseases such as [https://en.wikipedia.org/wiki/Osteoporosis Osteoporosis], [https://en.wikipedia.org/wiki/Paget&#039;s_disease_of_bone Paget&#039;s disease], and [https://en.wikipedia.org/wiki/Osteogenesis_imperfecta osteogenesis imperfecta]&amp;lt;ref&amp;gt;Gong Li, Altman Russ B, Klein Teri E . &amp;quot;Bisphosphonates pathway&amp;quot; Pharmacogenetics and genomics (2011). from https://www.pharmgkb.org/pathway/PA154423660&amp;lt;/ref&amp;gt;.&lt;br /&gt;
Functioning as a nitrogen-containing, second generation [https://en.wikipedia.org/wiki/Bisphosphonate bisphosphonate], Fosamax binds to [https://en.wikipedia.org/wiki/Hydroxylapatite hydroxyapatite] in bone and promotes [https://en.wikipedia.org/wiki/Apoptosis apoptosis] in [https://en.wikipedia.org/wiki/Osteoclast osteoclasts] (cells specialized in skeletal breakdown), thereby delaying the degradation of bone tissue. While incorporated in bone matrix, alendronate is not pharmacologically active, thus, it must be continuously administered to suppress osteoclasts on newly formed resorption surfaces &amp;lt;ref&amp;gt;Fosamax: Uses, Dosage &amp;amp; Side Effects - Drugs.com. (2016, November 3).Fosamax: Uses, Dosage &amp;amp; Side Effects - Drugs.com. Retrieved November 14, 2016, from https://www.drugs.com/fosamax.html&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
== History &amp;lt;ref&amp;gt;Fosamax (alendronate sodium). Fosamax New FDA Drug Approval | CenterWatch. Merck. Retrieved November 15, 2016, from http://www.centerwatch.com/drug-information/fda-approved-drugs/drug/26/fosamax-alendronate-sodium&amp;lt;/ref&amp;gt;==&lt;br /&gt;
Fosamax has been in use since September 29, 1995 after gaining [http://google2.fda.gov/search?q=fosamax&amp;amp;client=FDAgov&amp;amp;site=FDAgov&amp;amp;lr=&amp;amp;proxystylesheet=FDAgov&amp;amp;requiredfields=-archive%3AYes&amp;amp;output=xml_no_dtd&amp;amp;getfields=* Food and Drug Administration] (FDA) approval. The drug obtained FDA clearance based on data from five clinical trials, lasting two years, involving 1,827 postmenopausal women with osteoporosis in 16 different countries. The trials showed a significant increase in bone mineral density at the spine, hip, and other sites. Overall, the drug reduced the number of women with new spinal fractures by 48%, the total number of new spinal fractures by 63%, and reduced overall height loss by 35%. Today, the drug remains in circulation in caplet and liquid forms and attainable at most pharmaceutical distribution centers with an eligible prescription. &lt;br /&gt;
&lt;br /&gt;
== Side Effects &amp;lt;ref&amp;gt;Common Side Effects of Fosamax (Alendronate Sodium) Drug Center - RxList. (2015, August 26). RxList. Retrieved November 14, 2016, from  http://www.rxlist.com/fosamax-side-effects-drug-center.htm&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
Common side effects of Fosamax include gas, constipation, heartburn, diarrhea, bloating, nausea, vomiting, stomach pain, joint pain or swelling, swelling in your hands or feet, dizziness, headache, eye pain, back pain, or weakness.&lt;br /&gt;
Serious side effects of Fosamax include severe pain (joints, bone, muscle, jaw, back or heartburn), chest pain, difficulty swallowing, bloody stools, eye pain, skin blisters, and swelling of the face, tongue, or throat. &lt;br /&gt;
&lt;br /&gt;
== Structural Highlights &amp;lt;ref&amp;gt;Protein Data Bank in Europe: Bringing Structure to Biology, from http://www.ebi.ac.uk/pdbe/entry/pdb/2F89&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
As a bisphosphonate, Fosamax is a synthetic analog of [https://en.wikipedia.org/wiki/Pyrophosphate pyrophosphate], containing two protonated phosphorus oxyanions. Each oxyanion is attached to a hydroxyl group. In its drug form, sodium is bound in place of a carboxyl hydrogen. When in solution, Fosamax may form an ionic bond(s) with other metal cations such as magnesium. The central carbon is also attached to an -OH as well as a three-carbon chain leading up to an amino group (Fig. 2).&lt;br /&gt;
&amp;lt;StructureSection load=&#039;2f89&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;Crystal Structure of human FPPS in complex with a bisphosphonate.&#039; scene=&#039;&#039;&amp;gt; [[Image:Screen Shot 2016-12-04 at 3.21.51 PM.png|thumb|left|200px|Figure 2. Chemical structure of Fosamax (alendronate sodium).]] &lt;br /&gt;
[[Image:Screen Shot 2016-12-02 at 3.24.13 PM.png|thumb|left|400px|Figure 3. GPP/DMAPP ligand pocket of SPSS-alendronate complex indicated by yellow eclipse.]]&lt;br /&gt;
[[Image:Screen Shot 2016-12-02 at 3.33.04 PM.png|thumb|left|400px|Figure 4. Aspartate-Magnesium cation-phosphonate chelate within FPPS-alendronate complex. Pink sphere indicates Mg2+ ion; red indicates oxygen atom, yellow indicates phosphorous atom, blue (bond-line) indicates nitrogen, blue (ribbon) indicates alpha helix motif.]] [[Image:Screen Shot 2016-12-04 at 8.42.20 PM.png|thumb|left|500px|Figure 5. Comparison between the structure of the carbocation transition states of DMAPP and GPP to the nitrogen-containing bisphosphonate alendronate. Close similarity suggests that Fosamax acts as carbocation transition state analog of isoprenoid diphosphates &amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;.]]&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Mechanism of Action ==&lt;br /&gt;
Functioning as a nitrogen-containing, second generation bisphosphonate, Fosamax binds to hydroxyapatite in bone and promotes apoptosis in osteoclasts (cells specialized in skeletal breakdown) (Fig. 6), thus slowing the breakdown of bone&amp;lt;ref&amp;gt;Drake, Matthew T., Bart L. Clarke, and Sundeep Khosla. &amp;quot;Bisphosphonates: Mechanism of Action and Role in Clinical Practice.&amp;quot; Mayo Clinic Proceedings 83, no. 9 (2008): 1032-045. doi:10.4065/83.9.1032.&amp;lt;/ref&amp;gt;. In order to accomplish this, Fosamax inhibits [http://www.uniprot.org/uniprot/P14324 farnesyl pyrophosphate synthase] (FPPS), one of the enzymes found in the [https://en.wikipedia.org/wiki/Mevalonate_pathway mevalonic acid pathway], thereby reducing the production of isoprenoid compounds that are essential for post-translational modification of small guanosine triphosphate (GTP)-binding proteins (e.g. Rho, Rab and [https://pdb101.rcsb.org/motm/148 Ras])&amp;lt;ref&amp;gt;Luckman SP, Hughes DE, Coxon FP, Russell RGG, Rogers MJ. Nitrogen-Containing Biphosphonates Inhibit the Mevalonate Pathway and Prevent Post-Translational Prenylation of GTP-Binding Proteins, Including Ras. Journal of Bone and Mineral Research. 2005;20:1265–74&amp;lt;/ref&amp;gt;. By inhibiting FPPS, Fosamax discourages the successive condensation of isopentenyl pyrophosphate with dimethylallyl pyrophosphate and geranyl pyrophosphate, which interferes with osteoclast function and survival &amp;lt;ref&amp;gt;Alendronic acid. (2005, June 13), from http://www.drugbank.ca/drugs/DB00630#bond-15126&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;Fisher, J. E., Rogers, M. J., Halasy, J. M., Luckman, S. P., Hughes, D. E., Masarachia, P. J., … Reszka, A. A. (1999). Alendronate mechanism of action: geranylgeraniol, an intermediate in the mevalonate pathway, prevents inhibition of osteoclast formation, bone resorption, and kinase activation in vitro. Proceedings of the National Academy of Sciences, 96(1), 133–138. doi:10.1073/pnas.96.1.133, from http://www.pnas.org/content/96/1/133.full.pdf&amp;lt;/ref&amp;gt;. [[Image:Screen Shot 2016-12-04 at 8.23.53 PM.png|thumb|right|400px|Figure 6. Relationship between bisphosphonates and osteoclasts at individual stages of cellular life.&amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;]]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Though the exact chemical mechanism by which alendronate inhibits FPPS remains unclear, nitrogen-containing bisphosphates (&amp;lt;scene name=&#039;74/745950/Ligand/2&#039;&amp;gt;N-BP&amp;lt;/scene&amp;gt;s) bind to the geranyl pyrophosphate/dimethylallyl &amp;lt;scene name=&#039;74/745950/Correct_ligand_binding_site/7&#039;&amp;gt;(GPP/DMAPP) ligand binding pocket&amp;lt;/scene&amp;gt; (Fig. 3) and alter the secondary structure of the enzyme&amp;lt;ref&amp;gt;Kavanagh KL, Guo K, Dunford JE, Wu X, Knapp S, Ebetino FH, et al. The molecular mechanism of nitrogen-containing bisphosphonates as antiosteoporosis drugs. Proceedings of the National Academy of Sciences. 2006;103:7829–34&amp;lt;/ref&amp;gt;. Specifically, alendronate may bind to the FPPS allylic substrate-binding pocket by ligating the Magnesium ion center via phosphonate oxyanion nucleophilic attack&amp;lt;ref&amp;gt;Hosfield DJ, Zhang Y, Dougan DR, Broun A, Tari LW, Swanson RV, et al. Structural Basis for Bisphosphonate-mediated Inhibition of Isoprenoid Biosynthesis. Journal of Biological Chemistry. 2003;279:8526–9&amp;lt;/ref&amp;gt;. Phosphonate groups are stabilized by a cluster of three Mg2+ ions via oxyanion-metal cation charge interactions, as well as three FPPS-conserved aspartate residues located within two alpha helical motifs (&amp;lt;scene name=&#039;74/745950/Aspartates/1&#039;b&amp;gt;Asp-103, 107, and 243&amp;lt;/scene&amp;gt;) that form a ligand-bisphosphonate chelate (Fig. 4)&amp;lt;ref&amp;gt;Tarshis L. C., Yan M., Poulter C. D., Sacchettini J. C. Biochemistry. 1994;33:10871–10877. [PubMed]&amp;lt;/ref&amp;gt;. N-BPs may bind to the GPP substrate-binding site because N-BPs resemble the structure of the enzyme’s natural substrates (GPP and DMAPP) and act as carbocation transition state analogs (Fig. 5). Interactions between N-BP and amino acid residues (&amp;lt;scene name=&#039;74/745950/Lys200_thr201/3&#039;&amp;gt;Thr-201 and Lys-200&amp;lt;/scene&amp;gt;) suggest that these inhibitors position nitrogen in the carbocation-binding site, then mimic the carbocation intermediate formed via substrate ionization &amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;. By acting as a transition state analog for isoprenoid biosynthesis, Fosamax effectively increases the activation energy of a regulatory/rate-determining step in the mevalonate pathway, subsequently reducing the concentration of product molecules that aid the continuous biodegradation of skeletal tissue.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== References ==&lt;br /&gt;
&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Contributors and Editors ==&lt;br /&gt;
&lt;br /&gt;
[[User:Alyssa Jewel D. Floro|Floro, Alyssa Jewel D.]] [[User:Justin Myles Kidd|Kidd, Justin M.]] [[User:Osna M. Samady|Samady, Osna M.]]&lt;/div&gt;</summary>
		<author><name>Justin Myles Kidd</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Fosamax_(alendronate_sodium)&amp;diff=2688461</id>
		<title>Fosamax (alendronate sodium)</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Fosamax_(alendronate_sodium)&amp;diff=2688461"/>
		<updated>2016-12-05T21:31:08Z</updated>

		<summary type="html">&lt;p&gt;Justin Myles Kidd: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;scene name=&#039;74/745950/Correct_ligand_binding_site/3&#039;&amp;gt;&amp;lt;/scene&amp;gt;&amp;lt;table style=&amp;quot;width:200px; border:1px solid black; float:right; &amp;quot;&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td colspan=&amp;quot;2&amp;quot;&amp;gt;&amp;lt;center&amp;gt; FOSAMAX &amp;lt;/center&amp;gt;&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td colspan=&amp;quot;2&amp;quot;&amp;gt;&amp;lt;center&amp;gt;[[Image:Fosamax.gif|thumb|center|200px|Figure 1. Fosamax prescription drug, tablet form.]]&amp;lt;/center&amp;gt;&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Formula:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;C4H13NO7P2&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Molar Mass:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;249.097 g/mol&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;INN:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Alendronic Acid&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;USAN:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Alendronate sodium&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;IUPAC:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;4-amino-1-hydroxybutylidene) bisphosphonic acid monosodium salt trihydrate&lt;br /&gt;
&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;/table&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Fosamax (Alendronate Sodium or Alendronic Acid) is a pharmaceutical drug administered as an antiresorptive therapy agent for osteodegenerative diseases such as [https://en.wikipedia.org/wiki/Osteoporosis Osteoporosis], [https://en.wikipedia.org/wiki/Paget&#039;s_disease_of_bone Paget&#039;s disease], and [https://en.wikipedia.org/wiki/Osteogenesis_imperfecta osteogenesis imperfecta]&amp;lt;ref&amp;gt;Gong Li, Altman Russ B, Klein Teri E . &amp;quot;Bisphosphonates pathway&amp;quot; Pharmacogenetics and genomics (2011). from https://www.pharmgkb.org/pathway/PA154423660&amp;lt;/ref&amp;gt;.&lt;br /&gt;
Functioning as a nitrogen-containing, second generation [https://en.wikipedia.org/wiki/Bisphosphonate bisphosphonate], Fosamax binds to [https://en.wikipedia.org/wiki/Hydroxylapatite hydroxyapatite] in bone and promotes [https://en.wikipedia.org/wiki/Apoptosis apoptosis] in [https://en.wikipedia.org/wiki/Osteoclast osteoclasts] (cells specialized in skeletal breakdown), thereby delaying the degradation of bone tissue. While incorporated in bone matrix, alendronate is not pharmacologically active, thus, it must be continuously administered to suppress osteoclasts on newly formed resorption surfaces &amp;lt;ref&amp;gt;Fosamax: Uses, Dosage &amp;amp; Side Effects - Drugs.com. (2016, November 3).Fosamax: Uses, Dosage &amp;amp; Side Effects - Drugs.com. Retrieved November 14, 2016, from https://www.drugs.com/fosamax.html&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
== History &amp;lt;ref&amp;gt;Fosamax (alendronate sodium). Fosamax New FDA Drug Approval | CenterWatch. Merck. Retrieved November 15, 2016, from http://www.centerwatch.com/drug-information/fda-approved-drugs/drug/26/fosamax-alendronate-sodium&amp;lt;/ref&amp;gt;==&lt;br /&gt;
Fosamax has been in use since September 29, 1995 after gaining [http://google2.fda.gov/search?q=fosamax&amp;amp;client=FDAgov&amp;amp;site=FDAgov&amp;amp;lr=&amp;amp;proxystylesheet=FDAgov&amp;amp;requiredfields=-archive%3AYes&amp;amp;output=xml_no_dtd&amp;amp;getfields=* Food and Drug Administration] (FDA) approval. The drug obtained FDA clearance based on data from five clinical trials, lasting two years, involving 1,827 postmenopausal women with osteoporosis in 16 different countries. The trials showed a significant increase in bone mineral density at the spine, hip, and other sites. Overall, the drug reduced the number of women with new spinal fractures by 48%, the total number of new spinal fractures by 63%, and reduced overall height loss by 35%. Today, the drug remains in circulation in caplet and liquid forms and attainable at most pharmaceutical distribution centers with an eligible prescription. &lt;br /&gt;
&lt;br /&gt;
== Side Effects &amp;lt;ref&amp;gt;Common Side Effects of Fosamax (Alendronate Sodium) Drug Center - RxList. (2015, August 26). RxList. Retrieved November 14, 2016, from  http://www.rxlist.com/fosamax-side-effects-drug-center.htm&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
Common side effects of Fosamax include gas, constipation, heartburn, diarrhea, bloating, nausea, vomiting, stomach pain, joint pain or swelling, swelling in your hands or feet, dizziness, headache, eye pain, back pain, or weakness.&lt;br /&gt;
Serious side effects of Fosamax include severe pain (joints, bone, muscle, jaw, back or heartburn), chest pain, difficulty swallowing, bloody stools, eye pain, skin blisters, and swelling of the face, tongue, or throat. &lt;br /&gt;
&lt;br /&gt;
== Structural Highlights &amp;lt;ref&amp;gt;Protein Data Bank in Europe: Bringing Structure to Biology, from http://www.ebi.ac.uk/pdbe/entry/pdb/2F89&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
As a bisphosphonate, Fosamax is a synthetic analog of [https://en.wikipedia.org/wiki/Pyrophosphate pyrophosphate], containing two protonated phosphorus oxyanions. Each oxyanion is attached to a hydroxyl group. In its drug form, sodium is bound in place of a carboxyl hydrogen. When in solution, Fosamax may form an ionic bond(s) with other metal cations such as magnesium. The central carbon is also attached to an -OH as well as a three-carbon chain leading up to an amino group (Fig. 2).&lt;br /&gt;
&amp;lt;StructureSection load=&#039;2f89&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;Crystal Structure of human FPPS in complex with a bisphosphonate.&#039; scene=&#039;&#039;&amp;gt; [[Image:Screen Shot 2016-12-04 at 3.21.51 PM.png|thumb|left|200px|Figure 2. Chemical structure of Fosamax (alendronate sodium).]] &lt;br /&gt;
[[Image:Screen Shot 2016-12-02 at 3.24.13 PM.png|thumb|left|400px|Figure 3. GPP/DMAPP ligand pocket of SPSS-alendronate complex indicated by yellow eclipse.]]&lt;br /&gt;
[[Image:Screen Shot 2016-12-02 at 3.33.04 PM.png|thumb|left|400px|Figure 4. Aspartate-Magnesium cation-phosphonate chelate within FPPS-alendronate complex. Pink sphere indicates Mg2+ ion; red indicates oxygen atom, yellow indicates phosphorous atom, blue (bond-line) indicates nitrogen, blue (ribbon) indicates alpha helix motif.]] [[Image:Screen Shot 2016-12-04 at 8.42.20 PM.png|thumb|left|500px|Figure 5. Comparison between the structure of the carbocation transition states of DMAPP and GPP to the nitrogen-containing bisphosphonate alendronate. Close similarity suggests that Fosamax acts as carbocation transition state analog of isoprenoid diphosphates &amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;.]]&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Mechanism of Action ==&lt;br /&gt;
Functioning as a nitrogen-containing, second generation bisphosphonate, Fosamax binds to hydroxyapatite in bone and promotes apoptosis in osteoclasts (cells specialized in skeletal breakdown) (Fig. 6), thus slowing the breakdown of bone&amp;lt;ref&amp;gt;Drake, Matthew T., Bart L. Clarke, and Sundeep Khosla. &amp;quot;Bisphosphonates: Mechanism of Action and Role in Clinical Practice.&amp;quot; Mayo Clinic Proceedings 83, no. 9 (2008): 1032-045. doi:10.4065/83.9.1032.&amp;lt;/ref&amp;gt;. In order to accomplish this, Fosamax inhibits [http://www.uniprot.org/uniprot/P14324 farnesyl pyrophosphate synthase] (FPPS), one of the enzymes found in the [https://en.wikipedia.org/wiki/Mevalonate_pathway mevalonic acid pathway], thereby reducing the production of isoprenoid compounds that are essential for post-translational modification of small guanosine triphosphate (GTP)-binding proteins (e.g. Rho, Rab and [https://pdb101.rcsb.org/motm/148 Ras])&amp;lt;ref&amp;gt;Luckman SP, Hughes DE, Coxon FP, Russell RGG, Rogers MJ. Nitrogen-Containing Biphosphonates Inhibit the Mevalonate Pathway and Prevent Post-Translational Prenylation of GTP-Binding Proteins, Including Ras. Journal of Bone and Mineral Research. 2005;20:1265–74&amp;lt;/ref&amp;gt;. By inhibiting FPPS, Fosamax discourages the successive condensation of isopentenyl pyrophosphate with dimethylallyl pyrophosphate and geranyl pyrophosphate, which interferes with osteoclast function and survival &amp;lt;ref&amp;gt;Alendronic acid. (2005, June 13), from http://www.drugbank.ca/drugs/DB00630#bond-15126&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;Fisher, J. E., Rogers, M. J., Halasy, J. M., Luckman, S. P., Hughes, D. E., Masarachia, P. J., … Reszka, A. A. (1999). Alendronate mechanism of action: geranylgeraniol, an intermediate in the mevalonate pathway, prevents inhibition of osteoclast formation, bone resorption, and kinase activation in vitro. Proceedings of the National Academy of Sciences, 96(1), 133–138. doi:10.1073/pnas.96.1.133, from http://www.pnas.org/content/96/1/133.full.pdf&amp;lt;/ref&amp;gt;. [[Image:Screen Shot 2016-12-04 at 8.23.53 PM.png|thumb|right|400px|Figure 6. Relationship between bisphosphonates and osteoclasts at individual stages of cellular life.&amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;]]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Though the exact chemical mechanism by which alendronate inhibits FPPS remains unclear, nitrogen-containing bisphosphates (&amp;lt;scene name=&#039;74/745950/Ligand/1&#039;&amp;gt;N-BP&amp;lt;/scene&amp;gt;s) bind to the geranyl pyrophosphate/dimethylallyl &amp;lt;scene name=&#039;74/745950/Correct_ligand_binding_site/6&#039;&amp;gt;(GPP/DMAPP) ligand binding pocket&amp;lt;/scene&amp;gt; (Fig. 3) and alter the secondary structure of the enzyme&amp;lt;ref&amp;gt;Kavanagh KL, Guo K, Dunford JE, Wu X, Knapp S, Ebetino FH, et al. The molecular mechanism of nitrogen-containing bisphosphonates as antiosteoporosis drugs. Proceedings of the National Academy of Sciences. 2006;103:7829–34&amp;lt;/ref&amp;gt;. Specifically, alendronate may bind to the FPPS allylic substrate-binding pocket by ligating the Magnesium ion center via phosphonate oxyanion nucleophilic attack&amp;lt;ref&amp;gt;Hosfield DJ, Zhang Y, Dougan DR, Broun A, Tari LW, Swanson RV, et al. Structural Basis for Bisphosphonate-mediated Inhibition of Isoprenoid Biosynthesis. Journal of Biological Chemistry. 2003;279:8526–9&amp;lt;/ref&amp;gt;. Phosphonate groups are stabilized by a cluster of three Mg2+ ions via oxyanion-metal cation charge interactions, as well as three FPPS-conserved aspartate residues located within two alpha helical motifs (&amp;lt;scene name=&#039;74/745950/Aspartates/1&#039;b&amp;gt;Asp-103, 107, and 243&amp;lt;/scene&amp;gt;) that form a ligand-bisphosphonate chelate (Fig. 4)&amp;lt;ref&amp;gt;Tarshis L. C., Yan M., Poulter C. D., Sacchettini J. C. Biochemistry. 1994;33:10871–10877. [PubMed]&amp;lt;/ref&amp;gt;. N-BPs may bind to the GPP substrate-binding site because N-BPs resemble the structure of the enzyme’s natural substrates (GPP and DMAPP) and act as carbocation transition state analogs (Fig. 5). Interactions between N-BP and amino acid residues (&amp;lt;scene name=&#039;74/745950/Lys200_thr201/3&#039;&amp;gt;Thr-201 and Lys-200&amp;lt;/scene&amp;gt;) suggest that these inhibitors position nitrogen in the carbocation-binding site, then mimic the carbocation intermediate formed via substrate ionization &amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;. By acting as a transition state analog for isoprenoid biosynthesis, Fosamax effectively increases the activation energy of a regulatory/rate-determining step in the mevalonate pathway, subsequently reducing the concentration of product molecules that aid the continuous biodegradation of skeletal tissue.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== References ==&lt;br /&gt;
&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Contributors and Editors ==&lt;br /&gt;
&lt;br /&gt;
[[User:Alyssa Jewel D. Floro|Floro, Alyssa Jewel D.]] [[User:Justin Myles Kidd|Kidd, Justin M.]] [[User:Osna M. Samady|Samady, Osna M.]]&lt;/div&gt;</summary>
		<author><name>Justin Myles Kidd</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Fosamax_(alendronate_sodium)&amp;diff=2688458</id>
		<title>Fosamax (alendronate sodium)</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Fosamax_(alendronate_sodium)&amp;diff=2688458"/>
		<updated>2016-12-05T21:25:12Z</updated>

		<summary type="html">&lt;p&gt;Justin Myles Kidd: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;scene name=&#039;74/745950/Correct_ligand_binding_site/3&#039;&amp;gt;&amp;lt;/scene&amp;gt;&amp;lt;table style=&amp;quot;width:200px; border:1px solid black; float:right; &amp;quot;&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td colspan=&amp;quot;2&amp;quot;&amp;gt;&amp;lt;center&amp;gt; FOSAMAX &amp;lt;/center&amp;gt;&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td colspan=&amp;quot;2&amp;quot;&amp;gt;&amp;lt;center&amp;gt;[[Image:Fosamax.gif|thumb|center|200px|Figure 1. Fosamax prescription drug, tablet form.]]&amp;lt;/center&amp;gt;&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Formula:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;C4H13NO7P2&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Molar Mass:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;249.097 g/mol&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;INN:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Alendronic Acid&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;USAN:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Alendronate sodium&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;IUPAC:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;4-amino-1-hydroxybutylidene) bisphosphonic acid monosodium salt trihydrate&lt;br /&gt;
&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;/table&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Fosamax (Alendronate Sodium or Alendronic Acid) is a pharmaceutical drug administered as an antiresorptive therapy agent for osteodegenerative diseases such as [https://en.wikipedia.org/wiki/Osteoporosis Osteoporosis], [https://en.wikipedia.org/wiki/Paget&#039;s_disease_of_bone Paget&#039;s disease], and [https://en.wikipedia.org/wiki/Osteogenesis_imperfecta osteogenesis imperfecta]&amp;lt;ref&amp;gt;Gong Li, Altman Russ B, Klein Teri E . &amp;quot;Bisphosphonates pathway&amp;quot; Pharmacogenetics and genomics (2011). from https://www.pharmgkb.org/pathway/PA154423660&amp;lt;/ref&amp;gt;.&lt;br /&gt;
Functioning as a nitrogen-containing, second generation [https://en.wikipedia.org/wiki/Bisphosphonate bisphosphonate], Fosamax binds to [https://en.wikipedia.org/wiki/Hydroxylapatite hydroxyapatite] in bone and promotes [https://en.wikipedia.org/wiki/Apoptosis apoptosis] in [https://en.wikipedia.org/wiki/Osteoclast osteoclasts] (cells specialized in skeletal breakdown), thereby delaying the degradation of bone tissue. While incorporated in bone matrix, alendronate is not pharmacologically active, thus, it must be continuously administered to suppress osteoclasts on newly formed resorption surfaces &amp;lt;ref&amp;gt;Fosamax: Uses, Dosage &amp;amp; Side Effects - Drugs.com. (2016, November 3).Fosamax: Uses, Dosage &amp;amp; Side Effects - Drugs.com. Retrieved November 14, 2016, from https://www.drugs.com/fosamax.html&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
== History &amp;lt;ref&amp;gt;Fosamax (alendronate sodium). Fosamax New FDA Drug Approval | CenterWatch. Merck. Retrieved November 15, 2016, from http://www.centerwatch.com/drug-information/fda-approved-drugs/drug/26/fosamax-alendronate-sodium&amp;lt;/ref&amp;gt;==&lt;br /&gt;
Fosamax has been in use since September 29, 1995 after gaining [http://google2.fda.gov/search?q=fosamax&amp;amp;client=FDAgov&amp;amp;site=FDAgov&amp;amp;lr=&amp;amp;proxystylesheet=FDAgov&amp;amp;requiredfields=-archive%3AYes&amp;amp;output=xml_no_dtd&amp;amp;getfields=* Food and Drug Administration] (FDA) approval. The drug obtained FDA clearance based on data from five clinical trials, lasting two years, involving 1,827 postmenopausal women with osteoporosis in 16 different countries. The trials showed a significant increase in bone mineral density at the spine, hip, and other sites. Overall, the drug reduced the number of women with new spinal fractures by 48%, the total number of new spinal fractures by 63%, and reduced overall height loss by 35%. Today, the drug remains in circulation in caplet and liquid forms and attainable at most pharmaceutical distribution centers with an eligible prescription. &lt;br /&gt;
&lt;br /&gt;
== Side Effects &amp;lt;ref&amp;gt;Common Side Effects of Fosamax (Alendronate Sodium) Drug Center - RxList. (2015, August 26). RxList. Retrieved November 14, 2016, from  http://www.rxlist.com/fosamax-side-effects-drug-center.htm&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
Common side effects of Fosamax include gas, constipation, heartburn, diarrhea, bloating, nausea, vomiting, stomach pain, joint pain or swelling, swelling in your hands or feet, dizziness, headache, eye pain, back pain, or weakness.&lt;br /&gt;
Serious side effects of Fosamax include severe pain (joints, bone, muscle, jaw, back or heartburn), chest pain, difficulty swallowing, bloody stools, eye pain, skin blisters, and swelling of the face, tongue, or throat. &lt;br /&gt;
&lt;br /&gt;
== Structural Highlights &amp;lt;ref&amp;gt;Protein Data Bank in Europe: Bringing Structure to Biology, from http://www.ebi.ac.uk/pdbe/entry/pdb/2F89&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
As a bisphosphonate, Fosamax is a synthetic analog of [https://en.wikipedia.org/wiki/Pyrophosphate pyrophosphate], containing two protonated phosphorus oxyanions. Each oxyanion is attached to a hydroxyl group. In its drug form, sodium is bound in place of a carboxyl hydrogen. When in solution, Fosamax may form an ionic bond(s) with other metal cations such as magnesium. The central carbon is also attached to an -OH as well as a three-carbon chain leading up to an amino group (Fig. 2).&lt;br /&gt;
&amp;lt;StructureSection load=&#039;2f89&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;Crystal Structure of human FPPS in complex with a bisphosphonate.&#039; scene=&#039;&#039;&amp;gt; [[Image:Screen Shot 2016-12-04 at 3.21.51 PM.png|thumb|left|200px|Figure 2. Chemical structure of Fosamax (alendronate sodium).]] &lt;br /&gt;
[[Image:Screen Shot 2016-12-02 at 3.24.13 PM.png|thumb|left|400px|Figure 3. GPP/DMAPP ligand pocket of SPSS-alendronate complex indicated by yellow eclipse.]]&lt;br /&gt;
[[Image:Screen Shot 2016-12-02 at 3.33.04 PM.png|thumb|left|400px|Figure 4. Aspartate-Magnesium cation-phosphonate chelate within FPPS-alendronate complex. Pink sphere indicates Mg2+ ion; red indicates oxygen atom, yellow indicates phosphorous atom, blue (bond-line) indicates nitrogen, blue (ribbon) indicates alpha helix motif.]] [[Image:Screen Shot 2016-12-04 at 8.42.20 PM.png|thumb|left|500px|Figure 5. Comparison between the structure of the carbocation transition states of DMAPP and GPP to the nitrogen-containing bisphosphonate alendronate. Close similarity suggests that Fosamax acts as carbocation transition state analog of isoprenoid diphosphates &amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;.]]&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Mechanism of Action ==&lt;br /&gt;
Functioning as a nitrogen-containing, second generation bisphosphonate, Fosamax binds to hydroxyapatite in bone and promotes apoptosis in osteoclasts (cells specialized in skeletal breakdown) (Fig. 6), thus slowing the breakdown of bone&amp;lt;ref&amp;gt;Drake, Matthew T., Bart L. Clarke, and Sundeep Khosla. &amp;quot;Bisphosphonates: Mechanism of Action and Role in Clinical Practice.&amp;quot; Mayo Clinic Proceedings 83, no. 9 (2008): 1032-045. doi:10.4065/83.9.1032.&amp;lt;/ref&amp;gt;. In order to accomplish this, Fosamax inhibits [http://www.uniprot.org/uniprot/P14324 farnesyl pyrophosphate synthase] (FPPS), one of the enzymes found in the [https://en.wikipedia.org/wiki/Mevalonate_pathway mevalonic acid pathway], thereby reducing the production of isoprenoid compounds that are essential for post-translational modification of small guanosine triphosphate (GTP)-binding proteins (e.g. Rho, Rab and [https://pdb101.rcsb.org/motm/148 Ras])&amp;lt;ref&amp;gt;Luckman SP, Hughes DE, Coxon FP, Russell RGG, Rogers MJ. Nitrogen-Containing Biphosphonates Inhibit the Mevalonate Pathway and Prevent Post-Translational Prenylation of GTP-Binding Proteins, Including Ras. Journal of Bone and Mineral Research. 2005;20:1265–74&amp;lt;/ref&amp;gt;. By inhibiting FPPS, Fosamax discourages the successive condensation of isopentenyl pyrophosphate with dimethylallyl pyrophosphate and geranyl pyrophosphate, which interferes with osteoclast function and survival &amp;lt;ref&amp;gt;Alendronic acid. (2005, June 13), from http://www.drugbank.ca/drugs/DB00630#bond-15126&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;Fisher, J. E., Rogers, M. J., Halasy, J. M., Luckman, S. P., Hughes, D. E., Masarachia, P. J., … Reszka, A. A. (1999). Alendronate mechanism of action: geranylgeraniol, an intermediate in the mevalonate pathway, prevents inhibition of osteoclast formation, bone resorption, and kinase activation in vitro. Proceedings of the National Academy of Sciences, 96(1), 133–138. doi:10.1073/pnas.96.1.133, from http://www.pnas.org/content/96/1/133.full.pdf&amp;lt;/ref&amp;gt;. [[Image:Screen Shot 2016-12-04 at 8.23.53 PM.png|thumb|right|400px|Figure 6. Relationship between bisphosphonates and osteoclasts at individual stages of cellular life.&amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;]]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Though the exact chemical mechanism by which alendronate inhibits FPPS remains unclear, nitrogen-containing bisphosphates (N-BPs) bind to the geranyl pyrophosphate/dimethylallyl &amp;lt;scene name=&#039;74/745950/Correct_ligand_binding_site/6&#039;&amp;gt;(GPP/DMAPP) ligand binding pocket&amp;lt;/scene&amp;gt; (Fig. 3) and alter the secondary structure of the enzyme&amp;lt;ref&amp;gt;Kavanagh KL, Guo K, Dunford JE, Wu X, Knapp S, Ebetino FH, et al. The molecular mechanism of nitrogen-containing bisphosphonates as antiosteoporosis drugs. Proceedings of the National Academy of Sciences. 2006;103:7829–34&amp;lt;/ref&amp;gt;. Specifically, alendronate may bind to the FPPS allylic substrate-binding pocket by ligating the Magnesium ion center via phosphonate oxyanion nucleophilic attack&amp;lt;ref&amp;gt;Hosfield DJ, Zhang Y, Dougan DR, Broun A, Tari LW, Swanson RV, et al. Structural Basis for Bisphosphonate-mediated Inhibition of Isoprenoid Biosynthesis. Journal of Biological Chemistry. 2003;279:8526–9&amp;lt;/ref&amp;gt;. Phosphonate groups are stabilized by a cluster of three Mg2+ ions via oxyanion-metal cation charge interactions, as well as three FPPS-conserved aspartate residues located within two alpha helical motifs (&amp;lt;scene name=&#039;74/745950/Aspartates/1&#039;b&amp;gt;Asp-103, 107, and 243&amp;lt;/scene&amp;gt;) that form a ligand-bisphosphonate chelate (Fig. 4)&amp;lt;ref&amp;gt;Tarshis L. C., Yan M., Poulter C. D., Sacchettini J. C. Biochemistry. 1994;33:10871–10877. [PubMed]&amp;lt;/ref&amp;gt;. N-BPs may bind to the GPP substrate-binding site because N-BPs resemble the structure of the enzyme’s natural substrates (GPP and DMAPP) and act as carbocation transition state analogs (Fig. 5). Interactions between N-BP and amino acid residues (&amp;lt;scene name=&#039;74/745950/Lys200_thr201/3&#039;&amp;gt;Thr-201 and Lys-200&amp;lt;/scene&amp;gt;) suggest that these inhibitors position nitrogen in the carbocation-binding site, then mimic the carbocation intermediate formed via substrate ionization &amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;. By acting as a transition state analog for isoprenoid biosynthesis, Fosamax effectively increases the activation energy of a regulatory/rate-determining step in the mevalonate pathway, subsequently reducing the concentration of product molecules that aid the continuous biodegradation of skeletal tissue.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== References ==&lt;br /&gt;
&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Contributors and Editors ==&lt;br /&gt;
&lt;br /&gt;
[[User:Alyssa Jewel D. Floro|Floro, Alyssa Jewel D.]] [[User:Justin Myles Kidd|Kidd, Justin M.]] [[User:Osna M. Samady|Samady, Osna M.]]&lt;/div&gt;</summary>
		<author><name>Justin Myles Kidd</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Fosamax_(alendronate_sodium)&amp;diff=2688457</id>
		<title>Fosamax (alendronate sodium)</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Fosamax_(alendronate_sodium)&amp;diff=2688457"/>
		<updated>2016-12-05T21:22:03Z</updated>

		<summary type="html">&lt;p&gt;Justin Myles Kidd: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;scene name=&#039;74/745950/Correct_ligand_binding_site/3&#039;&amp;gt;&amp;lt;/scene&amp;gt;&amp;lt;table style=&amp;quot;width:200px; border:1px solid black; float:right; &amp;quot;&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td colspan=&amp;quot;2&amp;quot;&amp;gt;&amp;lt;center&amp;gt; FOSAMAX &amp;lt;/center&amp;gt;&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td colspan=&amp;quot;2&amp;quot;&amp;gt;&amp;lt;center&amp;gt;[[Image:Fosamax.gif|thumb|center|200px|Figure 1. Fosamax prescription drug, tablet form.]]&amp;lt;/center&amp;gt;&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Formula:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;C4H13NO7P2&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Molar Mass:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;249.097 g/mol&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;INN:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Alendronic Acid&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;USAN:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Alendronate sodium&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;IUPAC:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;4-amino-1-hydroxybutylidene) bisphosphonic acid monosodium salt trihydrate&lt;br /&gt;
&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;/table&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Fosamax (Alendronate Sodium or Alendronic Acid) is a pharmaceutical drug administered as an antiresorptive therapy agent for osteodegenerative diseases such as [https://en.wikipedia.org/wiki/Osteoporosis Osteoporosis], [https://en.wikipedia.org/wiki/Paget&#039;s_disease_of_bone Paget&#039;s disease], and [https://en.wikipedia.org/wiki/Osteogenesis_imperfecta osteogenesis imperfecta]&amp;lt;ref&amp;gt;Gong Li, Altman Russ B, Klein Teri E . &amp;quot;Bisphosphonates pathway&amp;quot; Pharmacogenetics and genomics (2011). from https://www.pharmgkb.org/pathway/PA154423660&amp;lt;/ref&amp;gt;.&lt;br /&gt;
Functioning as a nitrogen-containing, second generation [https://en.wikipedia.org/wiki/Bisphosphonate bisphosphonate], Fosamax binds to [https://en.wikipedia.org/wiki/Hydroxylapatite hydroxyapatite] in bone and promotes [https://en.wikipedia.org/wiki/Apoptosis apoptosis] in [https://en.wikipedia.org/wiki/Osteoclast osteoclasts] (cells specialized in skeletal breakdown), thereby delaying the degradation of bone tissue. While incorporated in bone matrix, alendronate is not pharmacologically active, thus, it must be continuously administered to suppress osteoclasts on newly formed resorption surfaces &amp;lt;ref&amp;gt;Fosamax: Uses, Dosage &amp;amp; Side Effects - Drugs.com. (2016, November 3).Fosamax: Uses, Dosage &amp;amp; Side Effects - Drugs.com. Retrieved November 14, 2016, from https://www.drugs.com/fosamax.html&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
== History &amp;lt;ref&amp;gt;Fosamax (alendronate sodium). Fosamax New FDA Drug Approval | CenterWatch. Merck. Retrieved November 15, 2016, from http://www.centerwatch.com/drug-information/fda-approved-drugs/drug/26/fosamax-alendronate-sodium&amp;lt;/ref&amp;gt;==&lt;br /&gt;
Fosamax has been in use since September 29, 1995 after gaining [http://google2.fda.gov/search?q=fosamax&amp;amp;client=FDAgov&amp;amp;site=FDAgov&amp;amp;lr=&amp;amp;proxystylesheet=FDAgov&amp;amp;requiredfields=-archive%3AYes&amp;amp;output=xml_no_dtd&amp;amp;getfields=* Food and Drug Administration] (FDA) approval. The drug obtained FDA clearance based on data from five clinical trials, lasting two years, involving 1,827 postmenopausal women with osteoporosis in 16 different countries. The trials showed a significant increase in bone mineral density at the spine, hip, and other sites. Overall, the drug reduced the number of women with new spinal fractures by 48%, the total number of new spinal fractures by 63%, and reduced overall height loss by 35%. Today, the drug remains in circulation in caplet and liquid forms and attainable at most pharmaceutical distribution centers with an eligible prescription. &lt;br /&gt;
&lt;br /&gt;
== Side Effects &amp;lt;ref&amp;gt;Common Side Effects of Fosamax (Alendronate Sodium) Drug Center - RxList. (2015, August 26). RxList. Retrieved November 14, 2016, from  http://www.rxlist.com/fosamax-side-effects-drug-center.htm&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
Common side effects of Fosamax include gas, constipation, heartburn, diarrhea, bloating, nausea, vomiting, stomach pain, joint pain or swelling, swelling in your hands or feet, dizziness, headache, eye pain, back pain, or weakness.&lt;br /&gt;
Serious side effects of Fosamax include severe pain (joints, bone, muscle, jaw, back or heartburn), chest pain, difficulty swallowing, bloody stools, eye pain, skin blisters, and swelling of the face, tongue, or throat. &lt;br /&gt;
&lt;br /&gt;
== Structural Highlights &amp;lt;ref&amp;gt;Protein Data Bank in Europe: Bringing Structure to Biology, from http://www.ebi.ac.uk/pdbe/entry/pdb/2F89&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
As a bisphosphonate, Fosamax is a synthetic analog of [https://en.wikipedia.org/wiki/Pyrophosphate pyrophosphate], containing two protonated phosphorus oxyanions. Each oxyanion is attached to a hydroxyl group. In its drug form, sodium is bound in place of a carboxyl hydrogen. When in solution, Fosamax may form an ionic bond(s) with other metal cations such as magnesium. The central carbon is also attached to an -OH as well as a three-carbon chain leading up to an amino group (Fig. 2).&lt;br /&gt;
&amp;lt;StructureSection load=&#039;2f89&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;Crystal Structure of human FPPS in complex with a bisphosphonate.&#039; scene=&#039;&#039;&amp;gt; [[Image:Screen Shot 2016-12-04 at 3.21.51 PM.png|thumb|left|200px|Figure 2. Chemical structure of Fosamax (alendronate sodium).]] &lt;br /&gt;
[[Image:Screen Shot 2016-12-02 at 3.24.13 PM.png|thumb|left|400px|Figure 3. GPP/DMAPP ligand pocket of SPSS-alendronate complex indicated by yellow eclipse.]]&lt;br /&gt;
[[Image:Screen Shot 2016-12-02 at 3.33.04 PM.png|thumb|left|400px|Figure 4. Aspartate-Magnesium cation-phosphonate chelate within FPPS-alendronate complex. Pink sphere indicates Mg2+ ion; red indicates oxygen atom, yellow indicates phosphorous atom, blue (bond-line) indicates nitrogen, blue (ribbon) indicates alpha helix motif.]] [[Image:Screen Shot 2016-12-04 at 8.42.20 PM.png|thumb|left|500px|Figure 5. Comparison between the structure of the carbocation transition states of DMAPP and GPP to the nitrogen-containing bisphosphonate alendronate. Close similarity suggests that Fosamax acts as carbocation transition state analog of isoprenoid diphosphates &amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;.]]&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Mechanism of Action ==&lt;br /&gt;
Functioning as a nitrogen-containing, second generation bisphosphonate, Fosamax binds to hydroxyapatite in bone and promotes apoptosis in osteoclasts (cells specialized in skeletal breakdown) (Fig. 6), thus slowing the breakdown of bone&amp;lt;ref&amp;gt;Drake, Matthew T., Bart L. Clarke, and Sundeep Khosla. &amp;quot;Bisphosphonates: Mechanism of Action and Role in Clinical Practice.&amp;quot; Mayo Clinic Proceedings 83, no. 9 (2008): 1032-045. doi:10.4065/83.9.1032.&amp;lt;/ref&amp;gt;. In order to accomplish this, Fosamax inhibits [http://www.uniprot.org/uniprot/P14324 farnesyl pyrophosphate synthase] (FPPS), one of the enzymes found in the [https://en.wikipedia.org/wiki/Mevalonate_pathway mevalonic acid pathway], thereby reducing the production of isoprenoid compounds that are essential for post-translational modification of small guanosine triphosphate (GTP)-binding proteins (e.g. Rho, Rab and [https://pdb101.rcsb.org/motm/148 Ras])&amp;lt;ref&amp;gt;Luckman SP, Hughes DE, Coxon FP, Russell RGG, Rogers MJ. Nitrogen-Containing Biphosphonates Inhibit the Mevalonate Pathway and Prevent Post-Translational Prenylation of GTP-Binding Proteins, Including Ras. Journal of Bone and Mineral Research. 2005;20:1265–74&amp;lt;/ref&amp;gt;. By inhibiting FPPS, Fosamax discourages the successive condensation of isopentenyl pyrophosphate with dimethylallyl pyrophosphate and geranyl pyrophosphate, which interferes with osteoclast function and survival &amp;lt;ref&amp;gt;Alendronic acid. (2005, June 13), from http://www.drugbank.ca/drugs/DB00630#bond-15126&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;Fisher, J. E., Rogers, M. J., Halasy, J. M., Luckman, S. P., Hughes, D. E., Masarachia, P. J., … Reszka, A. A. (1999). Alendronate mechanism of action: geranylgeraniol, an intermediate in the mevalonate pathway, prevents inhibition of osteoclast formation, bone resorption, and kinase activation in vitro. Proceedings of the National Academy of Sciences, 96(1), 133–138. doi:10.1073/pnas.96.1.133, from http://www.pnas.org/content/96/1/133.full.pdf&amp;lt;/ref&amp;gt;. [[Image:Screen Shot 2016-12-04 at 8.23.53 PM.png|thumb|right|400px|Figure 6. Relationship between bisphosphonates and osteoclasts at individual stages of cellular life.&amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;]]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Though the exact chemical mechanism by which alendronate inhibits FPPS remains unclear, nitrogen-containing bisphosphates (N-BPs) bind to the geranyl pyrophosphate/dimethylallyl &amp;lt;scene name=&#039;74/745950/Correct_ligand_binding_site/4&#039;&amp;gt;(GPP/DMAPP) substrate binding site&amp;lt;/scene&amp;gt; (Fig. 3) and alter the secondary structure of the enzyme&amp;lt;ref&amp;gt;Kavanagh KL, Guo K, Dunford JE, Wu X, Knapp S, Ebetino FH, et al. The molecular mechanism of nitrogen-containing bisphosphonates as antiosteoporosis drugs. Proceedings of the National Academy of Sciences. 2006;103:7829–34&amp;lt;/ref&amp;gt;. Specifically, alendronate may bind to the FPPS allylic substrate-binding pocket by ligating the Magnesium ion center via phosphonate oxyanion nucleophilic attack&amp;lt;ref&amp;gt;Hosfield DJ, Zhang Y, Dougan DR, Broun A, Tari LW, Swanson RV, et al. Structural Basis for Bisphosphonate-mediated Inhibition of Isoprenoid Biosynthesis. Journal of Biological Chemistry. 2003;279:8526–9&amp;lt;/ref&amp;gt;. Phosphonate groups are stabilized by a cluster of three Mg2+ ions via oxyanion-metal cation charge interactions, as well as three FPPS-conserved aspartate residues located within two alpha helical motifs (&amp;lt;scene name=&#039;74/745950/Aspartates/1&#039;&amp;gt;Asp-103, 107, and 243&amp;lt;/scene&amp;gt;) that form a ligand-bisphosphonate chelate (Fig. 4)&amp;lt;ref&amp;gt;Tarshis L. C., Yan M., Poulter C. D., Sacchettini J. C. Biochemistry. 1994;33:10871–10877. [PubMed]&amp;lt;/ref&amp;gt;. N-BPs may bind to the GPP substrate-binding site because N-BPs resemble the structure of the enzyme’s natural substrates (GPP and DMAPP) and act as carbocation transition state analogs (Fig. 5). Interactions between N-BP and amino acid residues (&amp;lt;scene name=&#039;74/745950/Lys200_thr201/3&#039;&amp;gt;Thr-201 and Lys-200&amp;lt;/scene&amp;gt;) suggest that these inhibitors position nitrogen in the carbocation-binding site, then mimic the carbocation intermediate formed via substrate ionization &amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;. By acting as a transition state analog for isoprenoid biosynthesis, Fosamax effectively increases the activation energy of a regulatory/rate-determining step in the mevalonate pathway, subsequently reducing the concentration of product molecules that aid the continuous biodegradation of skeletal tissue.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== References ==&lt;br /&gt;
&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Contributors and Editors ==&lt;br /&gt;
&lt;br /&gt;
[[User:Alyssa Jewel D. Floro|Floro, Alyssa Jewel D.]] [[User:Justin Myles Kidd|Kidd, Justin M.]] [[User:Osna M. Samady|Samady, Osna M.]]&lt;/div&gt;</summary>
		<author><name>Justin Myles Kidd</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Fosamax_(alendronate_sodium)&amp;diff=2688456</id>
		<title>Fosamax (alendronate sodium)</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Fosamax_(alendronate_sodium)&amp;diff=2688456"/>
		<updated>2016-12-05T21:12:10Z</updated>

		<summary type="html">&lt;p&gt;Justin Myles Kidd: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;scene name=&#039;74/745950/Correct_ligand_binding_site/3&#039;&amp;gt;&amp;lt;/scene&amp;gt;&amp;lt;table style=&amp;quot;width:200px; border:1px solid black; float:right; &amp;quot;&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td colspan=&amp;quot;2&amp;quot;&amp;gt;&amp;lt;center&amp;gt; FOSAMAX &amp;lt;/center&amp;gt;&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td colspan=&amp;quot;2&amp;quot;&amp;gt;&amp;lt;center&amp;gt;[[Image:Fosamax.gif|thumb|center|200px|Figure 1. Fosamax prescription drug, tablet form.]]&amp;lt;/center&amp;gt;&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Formula:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;C4H13NO7P2&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Molar Mass:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;249.097 g/mol&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;INN:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Alendronic Acid&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;USAN:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Alendronate sodium&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;IUPAC:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;4-amino-1-hydroxybutylidene) bisphosphonic acid monosodium salt trihydrate&lt;br /&gt;
&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;/table&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Fosamax (Alendronate Sodium or Alendronic Acid) is a pharmaceutical drug administered as an antiresorptive therapy agent for osteodegenerative diseases such as [https://en.wikipedia.org/wiki/Osteoporosis Osteoporosis], [https://en.wikipedia.org/wiki/Paget&#039;s_disease_of_bone Paget&#039;s disease], and [https://en.wikipedia.org/wiki/Osteogenesis_imperfecta osteogenesis imperfecta]&amp;lt;ref&amp;gt;Gong Li, Altman Russ B, Klein Teri E . &amp;quot;Bisphosphonates pathway&amp;quot; Pharmacogenetics and genomics (2011). from https://www.pharmgkb.org/pathway/PA154423660&amp;lt;/ref&amp;gt;.&lt;br /&gt;
Functioning as a nitrogen-containing, second generation [https://en.wikipedia.org/wiki/Bisphosphonate bisphosphonate], Fosamax binds to [https://en.wikipedia.org/wiki/Hydroxylapatite hydroxyapatite] in bone and promotes [https://en.wikipedia.org/wiki/Apoptosis apoptosis] in [https://en.wikipedia.org/wiki/Osteoclast osteoclasts] (cells specialized in skeletal breakdown), thereby delaying the degradation of bone tissue. While incorporated in bone matrix, alendronate is not pharmacologically active, thus, it must be continuously administered to suppress osteoclasts on newly formed resorption surfaces &amp;lt;ref&amp;gt;Fosamax: Uses, Dosage &amp;amp; Side Effects - Drugs.com. (2016, November 3).Fosamax: Uses, Dosage &amp;amp; Side Effects - Drugs.com. Retrieved November 14, 2016, from https://www.drugs.com/fosamax.html&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
== History &amp;lt;ref&amp;gt;Fosamax (alendronate sodium). Fosamax New FDA Drug Approval | CenterWatch. Merck. Retrieved November 15, 2016, from http://www.centerwatch.com/drug-information/fda-approved-drugs/drug/26/fosamax-alendronate-sodium&amp;lt;/ref&amp;gt;==&lt;br /&gt;
Fosamax has been in use since September 29, 1995 after gaining [http://google2.fda.gov/search?q=fosamax&amp;amp;client=FDAgov&amp;amp;site=FDAgov&amp;amp;lr=&amp;amp;proxystylesheet=FDAgov&amp;amp;requiredfields=-archive%3AYes&amp;amp;output=xml_no_dtd&amp;amp;getfields=* Food and Drug Administration] (FDA) approval. The drug obtained FDA clearance based on data from five clinical trials, lasting two years, involving 1,827 postmenopausal women with osteoporosis in 16 different countries. The trials showed a significant increase in bone mineral density at the spine, hip, and other sites. Overall, the drug reduced the number of women with new spinal fractures by 48%, the total number of new spinal fractures by 63%, and reduced overall height loss by 35%. Today, the drug remains in circulation in caplet and liquid forms and attainable at most pharmaceutical distribution centers with an eligible prescription. &lt;br /&gt;
&lt;br /&gt;
== Side Effects &amp;lt;ref&amp;gt;Common Side Effects of Fosamax (Alendronate Sodium) Drug Center - RxList. (2015, August 26). RxList. Retrieved November 14, 2016, from  http://www.rxlist.com/fosamax-side-effects-drug-center.htm&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
Common side effects of Fosamax include gas, constipation, heartburn, diarrhea, bloating, nausea, vomiting, stomach pain, joint pain or swelling, swelling in your hands or feet, dizziness, headache, eye pain, back pain, or weakness.&lt;br /&gt;
Serious side effects of Fosamax include severe pain (joints, bone, muscle, jaw, back or heartburn), chest pain, difficulty swallowing, bloody stools, eye pain, skin blisters, and swelling of the face, tongue, or throat. &lt;br /&gt;
&lt;br /&gt;
== Structural Highlights &amp;lt;ref&amp;gt;Protein Data Bank in Europe: Bringing Structure to Biology, from http://www.ebi.ac.uk/pdbe/entry/pdb/2F89&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
As a bisphosphonate, Fosamax is a synthetic analog of [https://en.wikipedia.org/wiki/Pyrophosphate pyrophosphate], containing two protonated phosphorus oxyanions. Each oxyanion is attached to a hydroxyl group. In its drug form, sodium is bound in place of a carboxyl hydrogen. When in solution, Fosamax may form an ionic bond(s) with other metal cations such as magnesium. The central carbon is also attached to an -OH as well as a three-carbon chain leading up to an amino group (Fig. 2).&lt;br /&gt;
&amp;lt;StructureSection load=&#039;2f89&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;Crystal Structure of human FPPS in complex with a bisphosphonate.&#039; scene=&#039;&#039;&amp;gt; [[Image:Screen Shot 2016-12-04 at 3.21.51 PM.png|thumb|left|200px|Figure 2. Chemical structure of Fosamax (alendronate sodium).]] &lt;br /&gt;
[[Image:Screen Shot 2016-12-02 at 3.24.13 PM.png|thumb|left|400px|Figure 3. GPP/DMAPP ligand pocket of SPSS-alendronate complex indicated by yellow eclipse.]]&lt;br /&gt;
[[Image:Screen Shot 2016-12-02 at 3.33.04 PM.png|thumb|left|400px|Figure 4. Aspartate-Magnesium cation-phosphonate chelate within FPPS-alendronate complex. Pink sphere indicates Mg2+ ion; red indicates oxygen atom, yellow indicates phosphorous atom, blue (bond-line) indicates nitrogen, blue (ribbon) indicates alpha helix motif.]] [[Image:Screen Shot 2016-12-04 at 8.42.20 PM.png|thumb|left|500px|Figure 5. Comparison between the structure of the carbocation transition states of DMAPP and GPP to the nitrogen-containing bisphosphonate alendronate. Close similarity suggests that Fosamax acts as carbocation transition state analog of isoprenoid diphosphates &amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;.]]&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Mechanism of Action ==&lt;br /&gt;
Functioning as a nitrogen-containing, second generation bisphosphonate, Fosamax binds to hydroxyapatite in bone and promotes apoptosis in osteoclasts (cells specialized in skeletal breakdown) (Fig. 6), thus slowing the breakdown of bone&amp;lt;ref&amp;gt;Drake, Matthew T., Bart L. Clarke, and Sundeep Khosla. &amp;quot;Bisphosphonates: Mechanism of Action and Role in Clinical Practice.&amp;quot; Mayo Clinic Proceedings 83, no. 9 (2008): 1032-045. doi:10.4065/83.9.1032.&amp;lt;/ref&amp;gt;. In order to accomplish this, Fosamax inhibits [http://www.uniprot.org/uniprot/P14324 farnesyl pyrophosphate synthase] (FPPS), one of the enzymes found in the [https://en.wikipedia.org/wiki/Mevalonate_pathway mevalonic acid pathway], thereby reducing the production of isoprenoid compounds that are essential for post-translational modification of small guanosine triphosphate (GTP)-binding proteins (e.g. Rho, Rab and [https://pdb101.rcsb.org/motm/148 Ras])&amp;lt;ref&amp;gt;Luckman SP, Hughes DE, Coxon FP, Russell RGG, Rogers MJ. Nitrogen-Containing Biphosphonates Inhibit the Mevalonate Pathway and Prevent Post-Translational Prenylation of GTP-Binding Proteins, Including Ras. Journal of Bone and Mineral Research. 2005;20:1265–74&amp;lt;/ref&amp;gt;. By inhibiting FPPS, Fosamax discourages the successive condensation of isopentenyl pyrophosphate with dimethylallyl pyrophosphate and geranyl pyrophosphate, which interferes with osteoclast function and survival &amp;lt;ref&amp;gt;Alendronic acid. (2005, June 13), from http://www.drugbank.ca/drugs/DB00630#bond-15126&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;Fisher, J. E., Rogers, M. J., Halasy, J. M., Luckman, S. P., Hughes, D. E., Masarachia, P. J., … Reszka, A. A. (1999). Alendronate mechanism of action: geranylgeraniol, an intermediate in the mevalonate pathway, prevents inhibition of osteoclast formation, bone resorption, and kinase activation in vitro. Proceedings of the National Academy of Sciences, 96(1), 133–138. doi:10.1073/pnas.96.1.133, from http://www.pnas.org/content/96/1/133.full.pdf&amp;lt;/ref&amp;gt;. [[Image:Screen Shot 2016-12-04 at 8.23.53 PM.png|thumb|right|400px|Figure 6. Relationship between bisphosphonates and osteoclasts at individual stages of cellular life.&amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;]]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Though the exact chemical mechanism by which alendronate inhibits FPPS remains unclear, nitrogen-containing bisphosphates (N-BPs) bind to the geranyl pyrophosphate/dimethylallyl &amp;lt;scene name=&#039;74/745950/Correct_ligand_binding_site/4&#039;&amp;gt;(GPP/DMAPP) substrate binding site&amp;lt;/scene&amp;gt; (Fig. 3) and alter the secondary structure of the enzyme&amp;lt;ref&amp;gt;Kavanagh KL, Guo K, Dunford JE, Wu X, Knapp S, Ebetino FH, et al. The molecular mechanism of nitrogen-containing bisphosphonates as antiosteoporosis drugs. Proceedings of the National Academy of Sciences. 2006;103:7829–34&amp;lt;/ref&amp;gt;. Specifically, alendronate may bind to the FPPS allylic substrate-binding pocket by ligating the Magnesium ion center via phosphonate oxyanion nucleophilic attack&amp;lt;ref&amp;gt;Hosfield DJ, Zhang Y, Dougan DR, Broun A, Tari LW, Swanson RV, et al. Structural Basis for Bisphosphonate-mediated Inhibition of Isoprenoid Biosynthesis. Journal of Biological Chemistry. 2003;279:8526–9&amp;lt;/ref&amp;gt;. Phosphonate groups are stabilized by a cluster of three Mg2+ ions via oxyanion-metal cation charge interactions, as well as three FPPS-conserved aspartate residues located within two alpha helical motifs (~Asp-103, 107, and 243) that form a ligand-bisphosphonate chelate (Fig. 4)&amp;lt;ref&amp;gt;Tarshis L. C., Yan M., Poulter C. D., Sacchettini J. C. Biochemistry. 1994;33:10871–10877. [PubMed]&amp;lt;/ref&amp;gt;. N-BPs may bind to the GPP substrate-binding site because N-BPs resemble the structure of the enzyme’s natural substrates (GPP and DMAPP) and act as carbocation transition state analogs (Fig. 5). Interactions between N-BP and amino acid residues (&amp;lt;scene name=&#039;74/745950/Lys200_thr201/3&#039;&amp;gt;Thr-201 and Lys-200&amp;lt;/scene&amp;gt;) suggest that these inhibitors position nitrogen in the carbocation-binding site, then mimic the carbocation intermediate formed via substrate ionization &amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;. By acting as a transition state analog for isoprenoid biosynthesis, Fosamax effectively increases the activation energy of a regulatory/rate-determining step in the mevalonate pathway, subsequently reducing the concentration of product molecules that aid the continuous biodegradation of skeletal tissue.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== References ==&lt;br /&gt;
&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Contributors and Editors ==&lt;br /&gt;
&lt;br /&gt;
[[User:Alyssa Jewel D. Floro|Floro, Alyssa Jewel D.]] [[User:Justin Myles Kidd|Kidd, Justin M.]] [[User:Osna M. Samady|Samady, Osna M.]]&lt;/div&gt;</summary>
		<author><name>Justin Myles Kidd</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Fosamax_(alendronate_sodium)&amp;diff=2688455</id>
		<title>Fosamax (alendronate sodium)</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Fosamax_(alendronate_sodium)&amp;diff=2688455"/>
		<updated>2016-12-05T21:01:48Z</updated>

		<summary type="html">&lt;p&gt;Justin Myles Kidd: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;scene name=&#039;74/745950/Correct_ligand_binding_site/3&#039;&amp;gt;&amp;lt;/scene&amp;gt;&amp;lt;table style=&amp;quot;width:200px; border:1px solid black; float:right; &amp;quot;&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td colspan=&amp;quot;2&amp;quot;&amp;gt;&amp;lt;center&amp;gt; FOSAMAX &amp;lt;/center&amp;gt;&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td colspan=&amp;quot;2&amp;quot;&amp;gt;&amp;lt;center&amp;gt;[[Image:Fosamax.gif|thumb|center|200px|Figure 1. Fosamax prescription drug, tablet form.]]&amp;lt;/center&amp;gt;&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Formula:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;C4H13NO7P2&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Molar Mass:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;249.097 g/mol&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;INN:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Alendronic Acid&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;USAN:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Alendronate sodium&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;IUPAC:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;4-amino-1-hydroxybutylidene) bisphosphonic acid monosodium salt trihydrate&lt;br /&gt;
&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;/table&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Fosamax (Alendronate Sodium or Alendronic Acid) is a pharmaceutical drug administered as an antiresorptive therapy agent for osteodegenerative diseases such as [https://en.wikipedia.org/wiki/Osteoporosis Osteoporosis], [https://en.wikipedia.org/wiki/Paget&#039;s_disease_of_bone Paget&#039;s disease], and [https://en.wikipedia.org/wiki/Osteogenesis_imperfecta osteogenesis imperfecta]&amp;lt;ref&amp;gt;Gong Li, Altman Russ B, Klein Teri E . &amp;quot;Bisphosphonates pathway&amp;quot; Pharmacogenetics and genomics (2011). from https://www.pharmgkb.org/pathway/PA154423660&amp;lt;/ref&amp;gt;.&lt;br /&gt;
Functioning as a nitrogen-containing, second generation [https://en.wikipedia.org/wiki/Bisphosphonate bisphosphonate], Fosamax binds to [https://en.wikipedia.org/wiki/Hydroxylapatite hydroxyapatite] in bone and promotes [https://en.wikipedia.org/wiki/Apoptosis apoptosis] in [https://en.wikipedia.org/wiki/Osteoclast osteoclasts] (cells specialized in skeletal breakdown), thereby delaying the degradation of bone tissue. While incorporated in bone matrix, alendronate is not pharmacologically active, thus, it must be continuously administered to suppress osteoclasts on newly formed resorption surfaces &amp;lt;ref&amp;gt;Fosamax: Uses, Dosage &amp;amp; Side Effects - Drugs.com. (2016, November 3).Fosamax: Uses, Dosage &amp;amp; Side Effects - Drugs.com. Retrieved November 14, 2016, from https://www.drugs.com/fosamax.html&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
== History &amp;lt;ref&amp;gt;Fosamax (alendronate sodium). Fosamax New FDA Drug Approval | CenterWatch. Merck. Retrieved November 15, 2016, from http://www.centerwatch.com/drug-information/fda-approved-drugs/drug/26/fosamax-alendronate-sodium&amp;lt;/ref&amp;gt;==&lt;br /&gt;
Fosamax has been in use since September 29, 1995 after gaining [http://google2.fda.gov/search?q=fosamax&amp;amp;client=FDAgov&amp;amp;site=FDAgov&amp;amp;lr=&amp;amp;proxystylesheet=FDAgov&amp;amp;requiredfields=-archive%3AYes&amp;amp;output=xml_no_dtd&amp;amp;getfields=* Food and Drug Administration] (FDA) approval. The drug obtained FDA clearance based on data from five clinical trials, lasting two years, involving 1,827 postmenopausal women with osteoporosis in 16 different countries. The trials showed a significant increase in bone mineral density at the spine, hip, and other sites. Overall, the drug reduced the number of women with new spinal fractures by 48%, the total number of new spinal fractures by 63%, and reduced overall height loss by 35%. Today, the drug remains in circulation in caplet and liquid forms and attainable at most pharmaceutical distribution centers with an eligible prescription. &lt;br /&gt;
&lt;br /&gt;
== Side Effects &amp;lt;ref&amp;gt;Common Side Effects of Fosamax (Alendronate Sodium) Drug Center - RxList. (2015, August 26). RxList. Retrieved November 14, 2016, from  http://www.rxlist.com/fosamax-side-effects-drug-center.htm&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
Common side effects of Fosamax include gas, constipation, heartburn, diarrhea, bloating, nausea, vomiting, stomach pain, joint pain or swelling, swelling in your hands or feet, dizziness, headache, eye pain, back pain, or weakness.&lt;br /&gt;
Serious side effects of Fosamax include severe pain (joints, bone, muscle, jaw, back or heartburn), chest pain, difficulty swallowing, bloody stools, eye pain, skin blisters, and swelling of the face, tongue, or throat. &lt;br /&gt;
&lt;br /&gt;
== Structural Highlights &amp;lt;ref&amp;gt;Protein Data Bank in Europe: Bringing Structure to Biology, from http://www.ebi.ac.uk/pdbe/entry/pdb/2F89&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
As a bisphosphonate, Fosamax is a synthetic analog of [https://en.wikipedia.org/wiki/Pyrophosphate pyrophosphate], containing two protonated phosphorus oxyanions. Each oxyanion is attached to a hydroxyl group. In its drug form, sodium is bound in place of a carboxyl hydrogen. When in solution, Fosamax may form an ionic bond(s) with other metal cations such as magnesium. The central carbon is also attached to an -OH as well as a three-carbon chain leading up to an amino group (Fig. 2).&lt;br /&gt;
&amp;lt;StructureSection load=&#039;2f89&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;Crystal Structure of human FPPS in complex with a bisphosphonate.&#039; scene=&#039;&#039;&amp;gt; [[Image:Screen Shot 2016-12-04 at 3.21.51 PM.png|thumb|left|200px|Figure 2. Chemical structure of Fosamax (alendronate sodium).]] &lt;br /&gt;
[[Image:Screen Shot 2016-12-02 at 3.24.13 PM.png|thumb|left|400px|Figure 3. GPP/DMAPP ligand pocket of SPSS-alendronate complex indicated by yellow eclipse.]]&lt;br /&gt;
[[Image:Screen Shot 2016-12-02 at 3.33.04 PM.png|thumb|left|400px|Figure 4. Aspartate-Magnesium cation-phosphonate chelate within FPPS-alendronate complex. Pink sphere indicates Mg2+ ion; red indicates oxygen atom, yellow indicates phosphorous atom, blue (bond-line) indicates nitrogen, blue (ribbon) indicates alpha helix motif.]] [[Image:Screen Shot 2016-12-04 at 8.42.20 PM.png|thumb|left|500px|Figure 5. Comparison between the structure of the carbocation transition states of DMAPP and GPP to the nitrogen-containing bisphosphonate alendronate. Close similarity suggests that Fosamax acts as carbocation transition state analog of isoprenoid diphosphates &amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;.]]&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Mechanism of Action ==&lt;br /&gt;
Functioning as a nitrogen-containing, second generation bisphosphonate, Fosamax binds to hydroxyapatite in bone and promotes apoptosis in osteoclasts (cells specialized in skeletal breakdown) (Fig. 6), thus slowing the breakdown of bone&amp;lt;ref&amp;gt;Drake, Matthew T., Bart L. Clarke, and Sundeep Khosla. &amp;quot;Bisphosphonates: Mechanism of Action and Role in Clinical Practice.&amp;quot; Mayo Clinic Proceedings 83, no. 9 (2008): 1032-045. doi:10.4065/83.9.1032.&amp;lt;/ref&amp;gt;. In order to accomplish this, Fosamax inhibits [http://www.uniprot.org/uniprot/P14324 farnesyl pyrophosphate synthase] (FPPS), one of the enzymes found in the [https://en.wikipedia.org/wiki/Mevalonate_pathway mevalonic acid pathway], thereby reducing the production of isoprenoid compounds that are essential for post-translational modification of small guanosine triphosphate (GTP)-binding proteins (e.g. Rho, Rab and [https://pdb101.rcsb.org/motm/148 Ras])&amp;lt;ref&amp;gt;Luckman SP, Hughes DE, Coxon FP, Russell RGG, Rogers MJ. Nitrogen-Containing Biphosphonates Inhibit the Mevalonate Pathway and Prevent Post-Translational Prenylation of GTP-Binding Proteins, Including Ras. Journal of Bone and Mineral Research. 2005;20:1265–74&amp;lt;/ref&amp;gt;. By inhibiting FPPS, Fosamax discourages the successive condensation of isopentenyl pyrophosphate with dimethylallyl pyrophosphate and geranyl pyrophosphate, which interferes with osteoclast function and survival &amp;lt;ref&amp;gt;Alendronic acid. (2005, June 13), from http://www.drugbank.ca/drugs/DB00630#bond-15126&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;Fisher, J. E., Rogers, M. J., Halasy, J. M., Luckman, S. P., Hughes, D. E., Masarachia, P. J., … Reszka, A. A. (1999). Alendronate mechanism of action: geranylgeraniol, an intermediate in the mevalonate pathway, prevents inhibition of osteoclast formation, bone resorption, and kinase activation in vitro. Proceedings of the National Academy of Sciences, 96(1), 133–138. doi:10.1073/pnas.96.1.133, from http://www.pnas.org/content/96/1/133.full.pdf&amp;lt;/ref&amp;gt;. [[Image:Screen Shot 2016-12-04 at 8.23.53 PM.png|thumb|right|400px|Figure 6. Relationship between bisphosphonates and osteoclasts at individual stages of cellular life.&amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;]]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Though the exact chemical mechanism by which alendronate inhibits FPPS remains unclear, nitrogen-containing bisphosphates (N-BPs) bind to the geranyl pyrophosphate/dimethylallyl &amp;lt;scene name=&#039;74/745950/Correct_ligand_binding_site/4&#039;&amp;gt;(GPP/DMAPP) substrate binding site&amp;lt;/scene&amp;gt; (Fig. 3) and alter the secondary structure of the enzyme&amp;lt;ref&amp;gt;Kavanagh KL, Guo K, Dunford JE, Wu X, Knapp S, Ebetino FH, et al. The molecular mechanism of nitrogen-containing bisphosphonates as antiosteoporosis drugs. Proceedings of the National Academy of Sciences. 2006;103:7829–34&amp;lt;/ref&amp;gt;. Specifically, alendronate may bind to the FPPS allylic substrate-binding pocket by ligating the Magnesium ion center via phosphonate oxyanion nucleophilic attack&amp;lt;ref&amp;gt;Hosfield DJ, Zhang Y, Dougan DR, Broun A, Tari LW, Swanson RV, et al. Structural Basis for Bisphosphonate-mediated Inhibition of Isoprenoid Biosynthesis. Journal of Biological Chemistry. 2003;279:8526–9&amp;lt;/ref&amp;gt;. Phosphonate groups are stabilized by a cluster of three Mg2+ ions via oxyanion-metal cation charge interactions, as well as three FPPS-conserved aspartate residues located within two alpha helical motifs (~Asp-103, 107, and 243) that form a ligand-bisphosphonate chelate (Fig. 4)&amp;lt;ref&amp;gt;Tarshis L. C., Yan M., Poulter C. D., Sacchettini J. C. Biochemistry. 1994;33:10871–10877. [PubMed]&amp;lt;/ref&amp;gt;. N-BPs may bind to the GPP substrate-binding site because N-BPs resemble the structure of the enzyme’s natural substrates (GPP and DMAPP) and act as carbocation transition state analogs (Fig. 5). Interactions between N-BP and amino acid residues (&amp;lt;scene name=&#039;74/745950/Lys200_thr201/2&#039;&amp;gt;Thr-201 and Lys-200&amp;lt;/scene&amp;gt;) suggest that these inhibitors position nitrogen in the carbocation-binding site, then mimic the carbocation intermediate formed via substrate ionization &amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;. By acting as a transition state analog for isoprenoid biosynthesis, Fosamax effectively increases the activation energy of a regulatory/rate-determining step in the mevalonate pathway, subsequently reducing the concentration of product molecules that aid the continuous biodegradation of skeletal tissue.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== References ==&lt;br /&gt;
&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Contributors and Editors ==&lt;br /&gt;
&lt;br /&gt;
[[User:Alyssa Jewel D. Floro|Floro, Alyssa Jewel D.]] [[User:Justin Myles Kidd|Kidd, Justin M.]] [[User:Osna M. Samady|Samady, Osna M.]]&lt;/div&gt;</summary>
		<author><name>Justin Myles Kidd</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Fosamax_(alendronate_sodium)&amp;diff=2688453</id>
		<title>Fosamax (alendronate sodium)</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Fosamax_(alendronate_sodium)&amp;diff=2688453"/>
		<updated>2016-12-05T20:52:23Z</updated>

		<summary type="html">&lt;p&gt;Justin Myles Kidd: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;scene name=&#039;74/745950/Correct_ligand_binding_site/3&#039;&amp;gt;&amp;lt;/scene&amp;gt;&amp;lt;table style=&amp;quot;width:200px; border:1px solid black; float:right; &amp;quot;&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td colspan=&amp;quot;2&amp;quot;&amp;gt;&amp;lt;center&amp;gt; FOSAMAX &amp;lt;/center&amp;gt;&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td colspan=&amp;quot;2&amp;quot;&amp;gt;&amp;lt;center&amp;gt;[[Image:Fosamax.gif|thumb|center|200px|Figure 1. Fosamax prescription drug, tablet form.]]&amp;lt;/center&amp;gt;&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Formula:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;C4H13NO7P2&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Molar Mass:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;249.097 g/mol&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;INN:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Alendronic Acid&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;USAN:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Alendronate sodium&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;IUPAC:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;4-amino-1-hydroxybutylidene) bisphosphonic acid monosodium salt trihydrate&lt;br /&gt;
&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;/table&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Fosamax (Alendronate Sodium or Alendronic Acid) is a pharmaceutical drug administered as an antiresorptive therapy agent for osteodegenerative diseases such as [https://en.wikipedia.org/wiki/Osteoporosis Osteoporosis], [https://en.wikipedia.org/wiki/Paget&#039;s_disease_of_bone Paget&#039;s disease], and [https://en.wikipedia.org/wiki/Osteogenesis_imperfecta osteogenesis imperfecta]&amp;lt;ref&amp;gt;Gong Li, Altman Russ B, Klein Teri E . &amp;quot;Bisphosphonates pathway&amp;quot; Pharmacogenetics and genomics (2011). from https://www.pharmgkb.org/pathway/PA154423660&amp;lt;/ref&amp;gt;.&lt;br /&gt;
Functioning as a nitrogen-containing, second generation [https://en.wikipedia.org/wiki/Bisphosphonate bisphosphonate], Fosamax binds to [https://en.wikipedia.org/wiki/Hydroxylapatite hydroxyapatite] in bone and promotes [https://en.wikipedia.org/wiki/Apoptosis apoptosis] in [https://en.wikipedia.org/wiki/Osteoclast osteoclasts] (cells specialized in skeletal breakdown), thereby delaying the degradation of bone tissue. While incorporated in bone matrix, alendronate is not pharmacologically active, thus, it must be continuously administered to suppress osteoclasts on newly formed resorption surfaces &amp;lt;ref&amp;gt;Fosamax: Uses, Dosage &amp;amp; Side Effects - Drugs.com. (2016, November 3).Fosamax: Uses, Dosage &amp;amp; Side Effects - Drugs.com. Retrieved November 14, 2016, from https://www.drugs.com/fosamax.html&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
== History &amp;lt;ref&amp;gt;Fosamax (alendronate sodium). Fosamax New FDA Drug Approval | CenterWatch. Merck. Retrieved November 15, 2016, from http://www.centerwatch.com/drug-information/fda-approved-drugs/drug/26/fosamax-alendronate-sodium&amp;lt;/ref&amp;gt;==&lt;br /&gt;
Fosamax has been in use since September 29, 1995 after gaining [http://google2.fda.gov/search?q=fosamax&amp;amp;client=FDAgov&amp;amp;site=FDAgov&amp;amp;lr=&amp;amp;proxystylesheet=FDAgov&amp;amp;requiredfields=-archive%3AYes&amp;amp;output=xml_no_dtd&amp;amp;getfields=* Food and Drug Administration] (FDA) approval. The drug obtained FDA clearance based on data from five clinical trials, lasting two years, involving 1,827 postmenopausal women with osteoporosis in 16 different countries. The trials showed a significant increase in bone mineral density at the spine, hip, and other sites. Overall, the drug reduced the number of women with new spinal fractures by 48%, the total number of new spinal fractures by 63%, and reduced overall height loss by 35%. Today, the drug remains in circulation in caplet and liquid forms and attainable at most pharmaceutical distribution centers with an eligible prescription. &lt;br /&gt;
&lt;br /&gt;
== Side Effects &amp;lt;ref&amp;gt;Common Side Effects of Fosamax (Alendronate Sodium) Drug Center - RxList. (2015, August 26). RxList. Retrieved November 14, 2016, from  http://www.rxlist.com/fosamax-side-effects-drug-center.htm&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
Common side effects of Fosamax include gas, constipation, heartburn, diarrhea, bloating, nausea, vomiting, stomach pain, joint pain or swelling, swelling in your hands or feet, dizziness, headache, eye pain, back pain, or weakness.&lt;br /&gt;
Serious side effects of Fosamax include severe pain (joints, bone, muscle, jaw, back or heartburn), chest pain, difficulty swallowing, bloody stools, eye pain, skin blisters, and swelling of the face, tongue, or throat. &lt;br /&gt;
&lt;br /&gt;
== Structural Highlights &amp;lt;ref&amp;gt;Protein Data Bank in Europe: Bringing Structure to Biology, from http://www.ebi.ac.uk/pdbe/entry/pdb/2F89&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
As a bisphosphonate, Fosamax is a synthetic analog of [https://en.wikipedia.org/wiki/Pyrophosphate pyrophosphate], containing two protonated phosphorus oxyanions. Each oxyanion is attached to a hydroxyl group. In its drug form, sodium is bound in place of a carboxyl hydrogen. When in solution, Fosamax may form an ionic bond(s) with other metal cations such as magnesium. The central carbon is also attached to an -OH as well as a three-carbon chain leading up to an amino group (Fig. 2).&lt;br /&gt;
&amp;lt;StructureSection load=&#039;2f89&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;Crystal Structure of human FPPS in complex with a bisphosphonate.&#039; scene=&#039;&#039;&amp;gt; [[Image:Screen Shot 2016-12-04 at 3.21.51 PM.png|thumb|left|200px|Figure 2. Chemical structure of Fosamax (alendronate sodium).]] &lt;br /&gt;
[[Image:Screen Shot 2016-12-02 at 3.24.13 PM.png|thumb|left|400px|Figure 3. GPP/DMAPP ligand pocket of SPSS-alendronate complex indicated by yellow eclipse.]]&lt;br /&gt;
[[Image:Screen Shot 2016-12-02 at 3.33.04 PM.png|thumb|left|400px|Figure 4. Aspartate-Magnesium cation-phosphonate chelate within FPPS-alendronate complex. Pink sphere indicates Mg2+ ion; red indicates oxygen atom, yellow indicates phosphorous atom, blue (bond-line) indicates nitrogen, blue (ribbon) indicates alpha helix motif.]] [[Image:Screen Shot 2016-12-04 at 8.42.20 PM.png|thumb|left|500px|Figure 5. Comparison between the structure of the carbocation transition states of DMAPP and GPP to the nitrogen-containing bisphosphonate alendronate. Close similarity suggests that Fosamax acts as carbocation transition state analog of isoprenoid diphosphates &amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;.]]&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Mechanism of Action ==&lt;br /&gt;
Functioning as a nitrogen-containing, second generation bisphosphonate, Fosamax binds to hydroxyapatite in bone and promotes apoptosis in osteoclasts (cells specialized in skeletal breakdown) (Fig. 6), thus slowing the breakdown of bone&amp;lt;ref&amp;gt;Drake, Matthew T., Bart L. Clarke, and Sundeep Khosla. &amp;quot;Bisphosphonates: Mechanism of Action and Role in Clinical Practice.&amp;quot; Mayo Clinic Proceedings 83, no. 9 (2008): 1032-045. doi:10.4065/83.9.1032.&amp;lt;/ref&amp;gt;. In order to accomplish this, Fosamax inhibits [http://www.uniprot.org/uniprot/P14324 farnesyl pyrophosphate synthase] (FPPS), one of the enzymes found in the [https://en.wikipedia.org/wiki/Mevalonate_pathway mevalonic acid pathway], thereby reducing the production of isoprenoid compounds that are essential for post-translational modification of small guanosine triphosphate (GTP)-binding proteins (e.g. Rho, Rab and [https://pdb101.rcsb.org/motm/148 Ras])&amp;lt;ref&amp;gt;Luckman SP, Hughes DE, Coxon FP, Russell RGG, Rogers MJ. Nitrogen-Containing Biphosphonates Inhibit the Mevalonate Pathway and Prevent Post-Translational Prenylation of GTP-Binding Proteins, Including Ras. Journal of Bone and Mineral Research. 2005;20:1265–74&amp;lt;/ref&amp;gt;. By inhibiting FPPS, Fosamax discourages the successive condensation of isopentenyl pyrophosphate with dimethylallyl pyrophosphate and geranyl pyrophosphate, which interferes with osteoclast function and survival &amp;lt;ref&amp;gt;Alendronic acid. (2005, June 13), from http://www.drugbank.ca/drugs/DB00630#bond-15126&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;Fisher, J. E., Rogers, M. J., Halasy, J. M., Luckman, S. P., Hughes, D. E., Masarachia, P. J., … Reszka, A. A. (1999). Alendronate mechanism of action: geranylgeraniol, an intermediate in the mevalonate pathway, prevents inhibition of osteoclast formation, bone resorption, and kinase activation in vitro. Proceedings of the National Academy of Sciences, 96(1), 133–138. doi:10.1073/pnas.96.1.133, from http://www.pnas.org/content/96/1/133.full.pdf&amp;lt;/ref&amp;gt;. [[Image:Screen Shot 2016-12-04 at 8.23.53 PM.png|thumb|right|400px|Figure 6. Relationship between bisphosphonates and osteoclasts at individual stages of cellular life.&amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;]]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Though the exact chemical mechanism by which alendronate inhibits FPPS remains unclear, nitrogen-containing bisphosphates (N-BPs) bind to the geranyl pyrophosphate/dimethylallyl &amp;lt;scene name=&#039;74/745950/Correct_ligand_binding_site/4&#039;&amp;gt;(GPP/DMAPP) substrate binding site&amp;lt;/scene&amp;gt; (Fig. 3) and alter the secondary structure of the enzyme&amp;lt;ref&amp;gt;Kavanagh KL, Guo K, Dunford JE, Wu X, Knapp S, Ebetino FH, et al. The molecular mechanism of nitrogen-containing bisphosphonates as antiosteoporosis drugs. Proceedings of the National Academy of Sciences. 2006;103:7829–34&amp;lt;/ref&amp;gt;. Specifically, alendronate may bind to the FPPS allylic substrate-binding pocket by ligating the Magnesium ion center via phosphonate oxyanion nucleophilic attack&amp;lt;ref&amp;gt;Hosfield DJ, Zhang Y, Dougan DR, Broun A, Tari LW, Swanson RV, et al. Structural Basis for Bisphosphonate-mediated Inhibition of Isoprenoid Biosynthesis. Journal of Biological Chemistry. 2003;279:8526–9&amp;lt;/ref&amp;gt;. Phosphonate groups are stabilized by a cluster of three Mg2+ ions via oxyanion-metal cation charge interactions, as well as three FPPS-conserved aspartate residues located within two alpha helical motifs (~Asp-103, 107, and 243) that form a ligand-bisphosphonate chelate (Fig. 4)&amp;lt;ref&amp;gt;Tarshis L. C., Yan M., Poulter C. D., Sacchettini J. C. Biochemistry. 1994;33:10871–10877. [PubMed]&amp;lt;/ref&amp;gt;. N-BPs may bind to the GPP substrate-binding site because N-BPs resemble the structure of the enzyme’s natural substrates (GPP and DMAPP) and act as carbocation transition state analogs (Fig. 5). Interactions between N-BP and amino acid residues (&amp;lt;scene name=&#039;74/745950/Lys200_thr201/1&#039;&amp;gt;Thr-201 and Lys-200&amp;lt;/scene&amp;gt;) suggest that these inhibitors position nitrogen in the carbocation-binding site, then mimic the carbocation intermediate formed via substrate ionization &amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;. By acting as a transition state analog for isoprenoid biosynthesis, Fosamax effectively increases the activation energy of a regulatory/rate-determining step in the mevalonate pathway, subsequently reducing the concentration of product molecules that aid the continuous biodegradation of skeletal tissue.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== References ==&lt;br /&gt;
&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Contributors and Editors ==&lt;br /&gt;
&lt;br /&gt;
[[User:Alyssa Jewel D. Floro|Floro, Alyssa Jewel D.]] [[User:Justin Myles Kidd|Kidd, Justin M.]] [[User:Osna M. Samady|Samady, Osna M.]]&lt;/div&gt;</summary>
		<author><name>Justin Myles Kidd</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Fosamax_(alendronate_sodium)&amp;diff=2688451</id>
		<title>Fosamax (alendronate sodium)</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Fosamax_(alendronate_sodium)&amp;diff=2688451"/>
		<updated>2016-12-05T20:50:37Z</updated>

		<summary type="html">&lt;p&gt;Justin Myles Kidd: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;scene name=&#039;74/745950/Correct_ligand_binding_site/3&#039;&amp;gt;&amp;lt;/scene&amp;gt;&amp;lt;table style=&amp;quot;width:200px; border:1px solid black; float:right; &amp;quot;&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td colspan=&amp;quot;2&amp;quot;&amp;gt;&amp;lt;center&amp;gt; FOSAMAX &amp;lt;/center&amp;gt;&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td colspan=&amp;quot;2&amp;quot;&amp;gt;&amp;lt;center&amp;gt;[[Image:Fosamax.gif|thumb|center|200px|Figure 1. Fosamax prescription drug, tablet form.]]&amp;lt;/center&amp;gt;&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Formula:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;C4H13NO7P2&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Molar Mass:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;249.097 g/mol&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;INN:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Alendronic Acid&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;USAN:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Alendronate sodium&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;IUPAC:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;4-amino-1-hydroxybutylidene) bisphosphonic acid monosodium salt trihydrate&lt;br /&gt;
&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;/table&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Fosamax (Alendronate Sodium or Alendronic Acid) is a pharmaceutical drug administered as an antiresorptive therapy agent for osteodegenerative diseases such as [https://en.wikipedia.org/wiki/Osteoporosis Osteoporosis], [https://en.wikipedia.org/wiki/Paget&#039;s_disease_of_bone Paget&#039;s disease], and [https://en.wikipedia.org/wiki/Osteogenesis_imperfecta osteogenesis imperfecta]&amp;lt;ref&amp;gt;Gong Li, Altman Russ B, Klein Teri E . &amp;quot;Bisphosphonates pathway&amp;quot; Pharmacogenetics and genomics (2011). from https://www.pharmgkb.org/pathway/PA154423660&amp;lt;/ref&amp;gt;.&lt;br /&gt;
Functioning as a nitrogen-containing, second generation [https://en.wikipedia.org/wiki/Bisphosphonate bisphosphonate], Fosamax binds to [https://en.wikipedia.org/wiki/Hydroxylapatite hydroxyapatite] in bone and promotes [https://en.wikipedia.org/wiki/Apoptosis apoptosis] in [https://en.wikipedia.org/wiki/Osteoclast osteoclasts] (cells specialized in skeletal breakdown), thereby delaying the degradation of bone tissue. While incorporated in bone matrix, alendronate is not pharmacologically active, thus, it must be continuously administered to suppress osteoclasts on newly formed resorption surfaces &amp;lt;ref&amp;gt;Fosamax: Uses, Dosage &amp;amp; Side Effects - Drugs.com. (2016, November 3).Fosamax: Uses, Dosage &amp;amp; Side Effects - Drugs.com. Retrieved November 14, 2016, from https://www.drugs.com/fosamax.html&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
== History &amp;lt;ref&amp;gt;Fosamax (alendronate sodium). Fosamax New FDA Drug Approval | CenterWatch. Merck. Retrieved November 15, 2016, from http://www.centerwatch.com/drug-information/fda-approved-drugs/drug/26/fosamax-alendronate-sodium&amp;lt;/ref&amp;gt;==&lt;br /&gt;
Fosamax has been in use since September 29, 1995 after gaining [http://google2.fda.gov/search?q=fosamax&amp;amp;client=FDAgov&amp;amp;site=FDAgov&amp;amp;lr=&amp;amp;proxystylesheet=FDAgov&amp;amp;requiredfields=-archive%3AYes&amp;amp;output=xml_no_dtd&amp;amp;getfields=* Food and Drug Administration] (FDA) approval. The drug obtained FDA clearance based on data from five clinical trials, lasting two years, involving 1,827 postmenopausal women with osteoporosis in 16 different countries. The trials showed a significant increase in bone mineral density at the spine, hip, and other sites. Overall, the drug reduced the number of women with new spinal fractures by 48%, the total number of new spinal fractures by 63%, and reduced overall height loss by 35%. Today, the drug remains in circulation in caplet and liquid forms and attainable at most pharmaceutical distribution centers with an eligible prescription. &lt;br /&gt;
&lt;br /&gt;
== Side Effects &amp;lt;ref&amp;gt;Common Side Effects of Fosamax (Alendronate Sodium) Drug Center - RxList. (2015, August 26). RxList. Retrieved November 14, 2016, from  http://www.rxlist.com/fosamax-side-effects-drug-center.htm&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
Common side effects of Fosamax include gas, constipation, heartburn, diarrhea, bloating, nausea, vomiting, stomach pain, joint pain or swelling, swelling in your hands or feet, dizziness, headache, eye pain, back pain, or weakness.&lt;br /&gt;
Serious side effects of Fosamax include severe pain (joints, bone, muscle, jaw, back or heartburn), chest pain, difficulty swallowing, bloody stools, eye pain, skin blisters, and swelling of the face, tongue, or throat. &lt;br /&gt;
&lt;br /&gt;
== Structural Highlights &amp;lt;ref&amp;gt;Protein Data Bank in Europe: Bringing Structure to Biology, from http://www.ebi.ac.uk/pdbe/entry/pdb/2F89&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
As a bisphosphonate, Fosamax is a synthetic analog of [https://en.wikipedia.org/wiki/Pyrophosphate pyrophosphate], containing two protonated phosphorus oxyanions. Each oxyanion is attached to a hydroxyl group. In its drug form, sodium is bound in place of a carboxyl hydrogen. When in solution, Fosamax may form an ionic bond(s) with other metal cations such as magnesium. The central carbon is also attached to an -OH as well as a three-carbon chain leading up to an amino group (Fig. 2).&lt;br /&gt;
&amp;lt;StructureSection load=&#039;2f89&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;Crystal Structure of human FPPS in complex with a bisphosphonate.&#039; scene=&#039;&#039;&amp;gt; [[Image:Screen Shot 2016-12-04 at 3.21.51 PM.png|thumb|left|200px|Figure 2. Chemical structure of Fosamax (alendronate sodium).]] &lt;br /&gt;
[[Image:Screen Shot 2016-12-02 at 3.24.13 PM.png|thumb|left|400px|Figure 3. GPP/DMAPP ligand pocket of SPSS-alendronate complex indicated by yellow eclipse.]]&lt;br /&gt;
[[Image:Screen Shot 2016-12-02 at 3.33.04 PM.png|thumb|left|400px|Figure 4. Aspartate-Magnesium cation-phosphonate chelate within FPPS-alendronate complex. Pink sphere indicates Mg2+ ion; red indicates oxygen atom, yellow indicates phosphorous atom, blue (bond-line) indicates nitrogen, blue (ribbon) indicates alpha helix motif.]] [[Image:Screen Shot 2016-12-04 at 8.42.20 PM.png|thumb|left|500px|Figure 5. Comparison between the structure of the carbocation transition states of DMAPP and GPP to the nitrogen-containing bisphosphonate alendronate. Close similarity suggests that Fosamax acts as carbocation transition state analog of isoprenoid diphosphates &amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;.]]&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Mechanism of Action ==&lt;br /&gt;
Functioning as a nitrogen-containing, second generation bisphosphonate, Fosamax binds to hydroxyapatite in bone and promotes apoptosis in osteoclasts (cells specialized in skeletal breakdown) (Fig. 6), thus slowing the breakdown of bone&amp;lt;ref&amp;gt;Drake, Matthew T., Bart L. Clarke, and Sundeep Khosla. &amp;quot;Bisphosphonates: Mechanism of Action and Role in Clinical Practice.&amp;quot; Mayo Clinic Proceedings 83, no. 9 (2008): 1032-045. doi:10.4065/83.9.1032.&amp;lt;/ref&amp;gt;. In order to accomplish this, Fosamax inhibits [http://www.uniprot.org/uniprot/P14324 farnesyl pyrophosphate synthase] (FPPS), one of the enzymes found in the [https://en.wikipedia.org/wiki/Mevalonate_pathway mevalonic acid pathway], thereby reducing the production of isoprenoid compounds that are essential for post-translational modification of small guanosine triphosphate (GTP)-binding proteins (e.g. Rho, Rab and [https://pdb101.rcsb.org/motm/148 Ras])&amp;lt;ref&amp;gt;Luckman SP, Hughes DE, Coxon FP, Russell RGG, Rogers MJ. Nitrogen-Containing Biphosphonates Inhibit the Mevalonate Pathway and Prevent Post-Translational Prenylation of GTP-Binding Proteins, Including Ras. Journal of Bone and Mineral Research. 2005;20:1265–74&amp;lt;/ref&amp;gt;. By inhibiting FPPS, Fosamax discourages the successive condensation of isopentenyl pyrophosphate with dimethylallyl pyrophosphate and geranyl pyrophosphate, which interferes with osteoclast function and survival &amp;lt;ref&amp;gt;Alendronic acid. (2005, June 13), from http://www.drugbank.ca/drugs/DB00630#bond-15126&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;Fisher, J. E., Rogers, M. J., Halasy, J. M., Luckman, S. P., Hughes, D. E., Masarachia, P. J., … Reszka, A. A. (1999). Alendronate mechanism of action: geranylgeraniol, an intermediate in the mevalonate pathway, prevents inhibition of osteoclast formation, bone resorption, and kinase activation in vitro. Proceedings of the National Academy of Sciences, 96(1), 133–138. doi:10.1073/pnas.96.1.133, from http://www.pnas.org/content/96/1/133.full.pdf&amp;lt;/ref&amp;gt;. [[Image:Screen Shot 2016-12-04 at 8.23.53 PM.png|thumb|right|400px|Figure 6. Relationship between bisphosphonates and osteoclasts at individual stages of cellular life.&amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;]]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Though the exact chemical mechanism by which alendronate inhibits FPPS remains unclear, nitrogen-containing bisphosphates (N-BPs) bind to the geranyl pyrophosphate/dimethylallyl &amp;lt;scene name=&#039;74/745950/Correct_ligand_binding_site/4&#039;&amp;gt;(GPP/DMAPP)&amp;lt;/scene&amp;gt; (Fig. 3) and alter the secondary structure of the enzyme&amp;lt;ref&amp;gt;Kavanagh KL, Guo K, Dunford JE, Wu X, Knapp S, Ebetino FH, et al. The molecular mechanism of nitrogen-containing bisphosphonates as antiosteoporosis drugs. Proceedings of the National Academy of Sciences. 2006;103:7829–34&amp;lt;/ref&amp;gt;. Specifically, alendronate may bind to the FPPS allylic substrate-binding pocket by ligating the Magnesium ion center via phosphonate oxyanion nucleophilic attack&amp;lt;ref&amp;gt;Hosfield DJ, Zhang Y, Dougan DR, Broun A, Tari LW, Swanson RV, et al. Structural Basis for Bisphosphonate-mediated Inhibition of Isoprenoid Biosynthesis. Journal of Biological Chemistry. 2003;279:8526–9&amp;lt;/ref&amp;gt;. Phosphonate groups are stabilized by a cluster of three Mg2+ ions via oxyanion-metal cation charge interactions, as well as three FPPS-conserved aspartate residues located within two alpha helical motifs (~Asp-103, 107, and 243) that form a ligand-bisphosphonate chelate (Fig. 4)&amp;lt;ref&amp;gt;Tarshis L. C., Yan M., Poulter C. D., Sacchettini J. C. Biochemistry. 1994;33:10871–10877. [PubMed]&amp;lt;/ref&amp;gt;. N-BPs may bind to the GPP substrate-binding site because N-BPs resemble the structure of the enzyme’s natural substrates (GPP and DMAPP) and act as carbocation transition state analogs (Fig. 5). Interactions between N-BP and amino acid residues (&amp;lt;scene name=&#039;74/745950/Lys200_thr201/1&#039;&amp;gt;Thr-201 and Lys-200&amp;lt;/scene&amp;gt;) suggest that these inhibitors position nitrogen in the carbocation-binding site, then mimic the carbocation intermediate formed via substrate ionization &amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;. By acting as a transition state analog for isoprenoid biosynthesis, Fosamax effectively increases the activation energy of a regulatory/rate-determining step in the mevalonate pathway, subsequently reducing the concentration of product molecules that aid the continuous biodegradation of skeletal tissue.&lt;br /&gt;
&lt;br /&gt;
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== References ==&lt;br /&gt;
&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Contributors and Editors ==&lt;br /&gt;
&lt;br /&gt;
[[User:Alyssa Jewel D. Floro|Floro, Alyssa Jewel D.]] [[User:Justin Myles Kidd|Kidd, Justin M.]] [[User:Osna M. Samady|Samady, Osna M.]]&lt;/div&gt;</summary>
		<author><name>Justin Myles Kidd</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Fosamax_(alendronate_sodium)&amp;diff=2688448</id>
		<title>Fosamax (alendronate sodium)</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Fosamax_(alendronate_sodium)&amp;diff=2688448"/>
		<updated>2016-12-05T20:32:55Z</updated>

		<summary type="html">&lt;p&gt;Justin Myles Kidd: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;scene name=&#039;74/745950/Correct_ligand_binding_site/3&#039;&amp;gt;&amp;lt;/scene&amp;gt;&amp;lt;table style=&amp;quot;width:200px; border:1px solid black; float:right; &amp;quot;&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td colspan=&amp;quot;2&amp;quot;&amp;gt;&amp;lt;center&amp;gt; FOSAMAX &amp;lt;/center&amp;gt;&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td colspan=&amp;quot;2&amp;quot;&amp;gt;&amp;lt;center&amp;gt;[[Image:Fosamax.gif|thumb|center|200px|Figure 1. Fosamax prescription drug, tablet form.]]&amp;lt;/center&amp;gt;&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Formula:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;C4H13NO7P2&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Molar Mass:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;249.097 g/mol&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;INN:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Alendronic Acid&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;USAN:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Alendronate sodium&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;IUPAC:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;4-amino-1-hydroxybutylidene) bisphosphonic acid monosodium salt trihydrate&lt;br /&gt;
&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;/table&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Fosamax (Alendronate Sodium or Alendronic Acid) is a pharmaceutical drug administered as an antiresorptive therapy agent for osteodegenerative diseases such as [https://en.wikipedia.org/wiki/Osteoporosis Osteoporosis], [https://en.wikipedia.org/wiki/Paget&#039;s_disease_of_bone Paget&#039;s disease], and [https://en.wikipedia.org/wiki/Osteogenesis_imperfecta osteogenesis imperfecta]&amp;lt;ref&amp;gt;Gong Li, Altman Russ B, Klein Teri E . &amp;quot;Bisphosphonates pathway&amp;quot; Pharmacogenetics and genomics (2011). from https://www.pharmgkb.org/pathway/PA154423660&amp;lt;/ref&amp;gt;.&lt;br /&gt;
Functioning as a nitrogen-containing, second generation [https://en.wikipedia.org/wiki/Bisphosphonate bisphosphonate], Fosamax binds to [https://en.wikipedia.org/wiki/Hydroxylapatite hydroxyapatite] in bone and promotes [https://en.wikipedia.org/wiki/Apoptosis apoptosis] in [https://en.wikipedia.org/wiki/Osteoclast osteoclasts] (cells specialized in skeletal breakdown), thereby delaying the degradation of bone tissue. While incorporated in bone matrix, alendronate is not pharmacologically active, thus, it must be continuously administered to suppress osteoclasts on newly formed resorption surfaces &amp;lt;ref&amp;gt;Fosamax: Uses, Dosage &amp;amp; Side Effects - Drugs.com. (2016, November 3).Fosamax: Uses, Dosage &amp;amp; Side Effects - Drugs.com. Retrieved November 14, 2016, from https://www.drugs.com/fosamax.html&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
== History &amp;lt;ref&amp;gt;Fosamax (alendronate sodium). Fosamax New FDA Drug Approval | CenterWatch. Merck. Retrieved November 15, 2016, from http://www.centerwatch.com/drug-information/fda-approved-drugs/drug/26/fosamax-alendronate-sodium&amp;lt;/ref&amp;gt;==&lt;br /&gt;
Fosamax has been in use since September 29, 1995 after gaining [http://google2.fda.gov/search?q=fosamax&amp;amp;client=FDAgov&amp;amp;site=FDAgov&amp;amp;lr=&amp;amp;proxystylesheet=FDAgov&amp;amp;requiredfields=-archive%3AYes&amp;amp;output=xml_no_dtd&amp;amp;getfields=* Food and Drug Administration] (FDA) approval. The drug obtained FDA clearance based on data from five clinical trials, lasting two years, involving 1,827 postmenopausal women with osteoporosis in 16 different countries. The trials showed a significant increase in bone mineral density at the spine, hip, and other sites. Overall, the drug reduced the number of women with new spinal fractures by 48%, the total number of new spinal fractures by 63%, and reduced overall height loss by 35%. Today, the drug remains in circulation in caplet and liquid forms and attainable at most pharmaceutical distribution centers with an eligible prescription. &lt;br /&gt;
&lt;br /&gt;
== Side Effects &amp;lt;ref&amp;gt;Common Side Effects of Fosamax (Alendronate Sodium) Drug Center - RxList. (2015, August 26). RxList. Retrieved November 14, 2016, from  http://www.rxlist.com/fosamax-side-effects-drug-center.htm&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
Common side effects of Fosamax include gas, constipation, heartburn, diarrhea, bloating, nausea, vomiting, stomach pain, joint pain or swelling, swelling in your hands or feet, dizziness, headache, eye pain, back pain, or weakness.&lt;br /&gt;
Serious side effects of Fosamax include severe pain (joints, bone, muscle, jaw, back or heartburn), chest pain, difficulty swallowing, bloody stools, eye pain, skin blisters, and swelling of the face, tongue, or throat. &lt;br /&gt;
&lt;br /&gt;
== Structural Highlights &amp;lt;ref&amp;gt;Protein Data Bank in Europe: Bringing Structure to Biology, from http://www.ebi.ac.uk/pdbe/entry/pdb/2F89&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
As a bisphosphonate, Fosamax is a synthetic analog of [https://en.wikipedia.org/wiki/Pyrophosphate pyrophosphate], containing two protonated phosphorus oxyanions. Each oxyanion is attached to a hydroxyl group. In its drug form, sodium is bound in place of a carboxyl hydrogen. When in solution, Fosamax may form an ionic bond(s) with other metal cations such as magnesium. The central carbon is also attached to an -OH as well as a three-carbon chain leading up to an amino group (Fig. 2).&lt;br /&gt;
&amp;lt;StructureSection load=&#039;2f89&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;Crystal Structure of human FPPS in complex with a bisphosphonate.&#039; scene=&#039;&#039;&amp;gt; [[Image:Screen Shot 2016-12-04 at 3.21.51 PM.png|thumb|left|200px|Figure 2. Chemical structure of Fosamax (alendronate sodium).]] &lt;br /&gt;
[[Image:Screen Shot 2016-12-02 at 3.24.13 PM.png|thumb|left|400px|Figure 3. GPP/DMAPP ligand pocket of SPSS-alendronate complex indicated by yellow eclipse.]]&lt;br /&gt;
[[Image:Screen Shot 2016-12-02 at 3.33.04 PM.png|thumb|left|400px|Figure 4. Aspartate-Magnesium cation-phosphonate chelate within FPPS-alendronate complex. Pink sphere indicates Mg2+ ion; red indicates oxygen atom, yellow indicates phosphorous atom, blue (bond-line) indicates nitrogen, blue (ribbon) indicates alpha helix motif.]] [[Image:Screen Shot 2016-12-04 at 8.42.20 PM.png|thumb|left|500px|Figure 5. Comparison between the structure of the carbocation transition states of DMAPP and GPP to the nitrogen-containing bisphosphonate alendronate. Close similarity suggests that Fosamax acts as carbocation transition state analog of isoprenoid diphosphates &amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;.]]&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Mechanism of Action ==&lt;br /&gt;
Functioning as a nitrogen-containing, second generation bisphosphonate, Fosamax binds to hydroxyapatite in bone and promotes apoptosis in osteoclasts (cells specialized in skeletal breakdown) (Fig. 6), thus slowing the breakdown of bone&amp;lt;ref&amp;gt;Drake, Matthew T., Bart L. Clarke, and Sundeep Khosla. &amp;quot;Bisphosphonates: Mechanism of Action and Role in Clinical Practice.&amp;quot; Mayo Clinic Proceedings 83, no. 9 (2008): 1032-045. doi:10.4065/83.9.1032.&amp;lt;/ref&amp;gt;. In order to accomplish this, Fosamax inhibits [http://www.uniprot.org/uniprot/P14324 farnesyl pyrophosphate synthase] (FPPS), one of the enzymes found in the [https://en.wikipedia.org/wiki/Mevalonate_pathway mevalonic acid pathway], thereby reducing the production of isoprenoid compounds that are essential for post-translational modification of small guanosine triphosphate (GTP)-binding proteins (e.g. Rho, Rab and [https://pdb101.rcsb.org/motm/148 Ras])&amp;lt;ref&amp;gt;Luckman SP, Hughes DE, Coxon FP, Russell RGG, Rogers MJ. Nitrogen-Containing Biphosphonates Inhibit the Mevalonate Pathway and Prevent Post-Translational Prenylation of GTP-Binding Proteins, Including Ras. Journal of Bone and Mineral Research. 2005;20:1265–74&amp;lt;/ref&amp;gt;. By inhibiting FPPS, Fosamax discourages the successive condensation of isopentenyl pyrophosphate with dimethylallyl pyrophosphate and geranyl pyrophosphate, which interferes with osteoclast function and survival &amp;lt;ref&amp;gt;Alendronic acid. (2005, June 13), from http://www.drugbank.ca/drugs/DB00630#bond-15126&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;Fisher, J. E., Rogers, M. J., Halasy, J. M., Luckman, S. P., Hughes, D. E., Masarachia, P. J., … Reszka, A. A. (1999). Alendronate mechanism of action: geranylgeraniol, an intermediate in the mevalonate pathway, prevents inhibition of osteoclast formation, bone resorption, and kinase activation in vitro. Proceedings of the National Academy of Sciences, 96(1), 133–138. doi:10.1073/pnas.96.1.133, from http://www.pnas.org/content/96/1/133.full.pdf&amp;lt;/ref&amp;gt;. [[Image:Screen Shot 2016-12-04 at 8.23.53 PM.png|thumb|right|400px|Figure 6. Relationship between bisphosphonates and osteoclasts at individual stages of cellular life.&amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;]]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Though the exact chemical mechanism by which alendronate inhibits FPPS remains unclear, nitrogen-containing bisphosphates (N-BPs) bind to the geranyl pyrophosphate/dimethylallyl &amp;lt;scene name=&#039;74/745950/Correct_ligand_binding_site/3&#039;&amp;gt;(GPP/DMAPP) substrate-binding site&amp;lt;/scene&amp;gt; (Fig. 3) and alter the secondary structure of the enzyme&amp;lt;ref&amp;gt;Kavanagh KL, Guo K, Dunford JE, Wu X, Knapp S, Ebetino FH, et al. The molecular mechanism of nitrogen-containing bisphosphonates as antiosteoporosis drugs. Proceedings of the National Academy of Sciences. 2006;103:7829–34&amp;lt;/ref&amp;gt;. Specifically, alendronate may bind to the FPPS allylic substrate-binding pocket by ligating the Magnesium ion center via phosphonate oxyanion nucleophilic attack&amp;lt;ref&amp;gt;Hosfield DJ, Zhang Y, Dougan DR, Broun A, Tari LW, Swanson RV, et al. Structural Basis for Bisphosphonate-mediated Inhibition of Isoprenoid Biosynthesis. Journal of Biological Chemistry. 2003;279:8526–9&amp;lt;/ref&amp;gt;. Phosphonate groups are stabilized by a cluster of three Mg2+ ions via oxyanion-metal cation charge interactions, as well as three FPPS-conserved aspartate residues located within two alpha helical motifs (~Asp-103, 107, and 243) that form a ligand-bisphosphonate chelate (Fig. 4)&amp;lt;ref&amp;gt;Tarshis L. C., Yan M., Poulter C. D., Sacchettini J. C. Biochemistry. 1994;33:10871–10877. [PubMed]&amp;lt;/ref&amp;gt;. N-BPs may bind to the GPP substrate-binding site because N-BPs resemble the structure of the enzyme’s natural substrates (GPP and DMAPP) and act as carbocation transition state analogs (Fig. 5). Interactions between N-BP and amino acid residues (&amp;lt;scene name=&#039;74/745950/Lys200_thr201/1&#039;&amp;gt;Thr-201 and Lys-200&amp;lt;/scene&amp;gt;) suggest that these inhibitors position nitrogen in the carbocation-binding site, then mimic the carbocation intermediate formed via substrate ionization &amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;. By acting as a transition state analog for isoprenoid biosynthesis, Fosamax effectively increases the activation energy of a regulatory/rate-determining step in the mevalonate pathway, subsequently reducing the concentration of product molecules that aid the continuous biodegradation of skeletal tissue.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== References ==&lt;br /&gt;
&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Contributors and Editors ==&lt;br /&gt;
&lt;br /&gt;
[[User:Alyssa Jewel D. Floro|Floro, Alyssa Jewel D.]] [[User:Justin Myles Kidd|Kidd, Justin M.]] [[User:Osna M. Samady|Samady, Osna M.]]&lt;/div&gt;</summary>
		<author><name>Justin Myles Kidd</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Fosamax_(alendronate_sodium)&amp;diff=2688447</id>
		<title>Fosamax (alendronate sodium)</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Fosamax_(alendronate_sodium)&amp;diff=2688447"/>
		<updated>2016-12-05T20:30:53Z</updated>

		<summary type="html">&lt;p&gt;Justin Myles Kidd: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td colspan=&amp;quot;2&amp;quot;&amp;gt;&amp;lt;center&amp;gt; FOSAMAX &amp;lt;/center&amp;gt;&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td colspan=&amp;quot;2&amp;quot;&amp;gt;&amp;lt;center&amp;gt;[[Image:Fosamax.gif|thumb|center|200px|Figure 1. Fosamax prescription drug, tablet form.]]&amp;lt;/center&amp;gt;&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Formula:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;C4H13NO7P2&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Molar Mass:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;249.097 g/mol&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;INN:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Alendronic Acid&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;USAN:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Alendronate sodium&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;IUPAC:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;4-amino-1-hydroxybutylidene) bisphosphonic acid monosodium salt trihydrate&lt;br /&gt;
&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;/table&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Fosamax (Alendronate Sodium or Alendronic Acid) is a pharmaceutical drug administered as an antiresorptive therapy agent for osteodegenerative diseases such as [https://en.wikipedia.org/wiki/Osteoporosis Osteoporosis], [https://en.wikipedia.org/wiki/Paget&#039;s_disease_of_bone Paget&#039;s disease], and [https://en.wikipedia.org/wiki/Osteogenesis_imperfecta osteogenesis imperfecta]&amp;lt;ref&amp;gt;Gong Li, Altman Russ B, Klein Teri E . &amp;quot;Bisphosphonates pathway&amp;quot; Pharmacogenetics and genomics (2011). from https://www.pharmgkb.org/pathway/PA154423660&amp;lt;/ref&amp;gt;.&lt;br /&gt;
Functioning as a nitrogen-containing, second generation [https://en.wikipedia.org/wiki/Bisphosphonate bisphosphonate], Fosamax binds to [https://en.wikipedia.org/wiki/Hydroxylapatite hydroxyapatite] in bone and promotes [https://en.wikipedia.org/wiki/Apoptosis apoptosis] in [https://en.wikipedia.org/wiki/Osteoclast osteoclasts] (cells specialized in skeletal breakdown), thereby delaying the degradation of bone tissue. While incorporated in bone matrix, alendronate is not pharmacologically active, thus, it must be continuously administered to suppress osteoclasts on newly formed resorption surfaces &amp;lt;ref&amp;gt;Fosamax: Uses, Dosage &amp;amp; Side Effects - Drugs.com. (2016, November 3).Fosamax: Uses, Dosage &amp;amp; Side Effects - Drugs.com. Retrieved November 14, 2016, from https://www.drugs.com/fosamax.html&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
== History &amp;lt;ref&amp;gt;Fosamax (alendronate sodium). Fosamax New FDA Drug Approval | CenterWatch. Merck. Retrieved November 15, 2016, from http://www.centerwatch.com/drug-information/fda-approved-drugs/drug/26/fosamax-alendronate-sodium&amp;lt;/ref&amp;gt;==&lt;br /&gt;
Fosamax has been in use since September 29, 1995 after gaining [http://google2.fda.gov/search?q=fosamax&amp;amp;client=FDAgov&amp;amp;site=FDAgov&amp;amp;lr=&amp;amp;proxystylesheet=FDAgov&amp;amp;requiredfields=-archive%3AYes&amp;amp;output=xml_no_dtd&amp;amp;getfields=* Food and Drug Administration] (FDA) approval. The drug obtained FDA clearance based on data from five clinical trials, lasting two years, involving 1,827 postmenopausal women with osteoporosis in 16 different countries. The trials showed a significant increase in bone mineral density at the spine, hip, and other sites. Overall, the drug reduced the number of women with new spinal fractures by 48%, the total number of new spinal fractures by 63%, and reduced overall height loss by 35%. Today, the drug remains in circulation in caplet and liquid forms and attainable at most pharmaceutical distribution centers with an eligible prescription. &lt;br /&gt;
&lt;br /&gt;
== Side Effects &amp;lt;ref&amp;gt;Common Side Effects of Fosamax (Alendronate Sodium) Drug Center - RxList. (2015, August 26). RxList. Retrieved November 14, 2016, from  http://www.rxlist.com/fosamax-side-effects-drug-center.htm&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
Common side effects of Fosamax include gas, constipation, heartburn, diarrhea, bloating, nausea, vomiting, stomach pain, joint pain or swelling, swelling in your hands or feet, dizziness, headache, eye pain, back pain, or weakness.&lt;br /&gt;
Serious side effects of Fosamax include severe pain (joints, bone, muscle, jaw, back or heartburn), chest pain, difficulty swallowing, bloody stools, eye pain, skin blisters, and swelling of the face, tongue, or throat. &lt;br /&gt;
&lt;br /&gt;
== Structural Highlights &amp;lt;ref&amp;gt;Protein Data Bank in Europe: Bringing Structure to Biology, from http://www.ebi.ac.uk/pdbe/entry/pdb/2F89&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
As a bisphosphonate, Fosamax is a synthetic analog of [https://en.wikipedia.org/wiki/Pyrophosphate pyrophosphate], containing two protonated phosphorus oxyanions. Each oxyanion is attached to a hydroxyl group. In its drug form, sodium is bound in place of a carboxyl hydrogen. When in solution, Fosamax may form an ionic bond(s) with other metal cations such as magnesium. The central carbon is also attached to an -OH as well as a three-carbon chain leading up to an amino group (Fig. 2).&lt;br /&gt;
&amp;lt;StructureSection load=&#039;2f89&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;Crystal Structure of human FPPS in complex with a bisphosphonate.&#039; scene=&#039;&#039;&amp;gt; [[Image:Screen Shot 2016-12-04 at 3.21.51 PM.png|thumb|left|200px|Figure 2. Chemical structure of Fosamax (alendronate sodium).]] &lt;br /&gt;
[[Image:Screen Shot 2016-12-02 at 3.24.13 PM.png|thumb|left|400px|Figure 3. GPP/DMAPP ligand pocket of SPSS-alendronate complex indicated by yellow eclipse.]]&lt;br /&gt;
[[Image:Screen Shot 2016-12-02 at 3.33.04 PM.png|thumb|left|400px|Figure 4. Aspartate-Magnesium cation-phosphonate chelate within FPPS-alendronate complex. Pink sphere indicates Mg2+ ion; red indicates oxygen atom, yellow indicates phosphorous atom, blue (bond-line) indicates nitrogen, blue (ribbon) indicates alpha helix motif.]] [[Image:Screen Shot 2016-12-04 at 8.42.20 PM.png|thumb|left|500px|Figure 5. Comparison between the structure of the carbocation transition states of DMAPP and GPP to the nitrogen-containing bisphosphonate alendronate. Close similarity suggests that Fosamax acts as carbocation transition state analog of isoprenoid diphosphates &amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;.]]&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Mechanism of Action ==&lt;br /&gt;
Functioning as a nitrogen-containing, second generation bisphosphonate, Fosamax binds to hydroxyapatite in bone and promotes apoptosis in osteoclasts (cells specialized in skeletal breakdown) (Fig. 6), thus slowing the breakdown of bone&amp;lt;ref&amp;gt;Drake, Matthew T., Bart L. Clarke, and Sundeep Khosla. &amp;quot;Bisphosphonates: Mechanism of Action and Role in Clinical Practice.&amp;quot; Mayo Clinic Proceedings 83, no. 9 (2008): 1032-045. doi:10.4065/83.9.1032.&amp;lt;/ref&amp;gt;. In order to accomplish this, Fosamax inhibits [http://www.uniprot.org/uniprot/P14324 farnesyl pyrophosphate synthase] (FPPS), one of the enzymes found in the [https://en.wikipedia.org/wiki/Mevalonate_pathway mevalonic acid pathway], thereby reducing the production of isoprenoid compounds that are essential for post-translational modification of small guanosine triphosphate (GTP)-binding proteins (e.g. Rho, Rab and [https://pdb101.rcsb.org/motm/148 Ras])&amp;lt;ref&amp;gt;Luckman SP, Hughes DE, Coxon FP, Russell RGG, Rogers MJ. Nitrogen-Containing Biphosphonates Inhibit the Mevalonate Pathway and Prevent Post-Translational Prenylation of GTP-Binding Proteins, Including Ras. Journal of Bone and Mineral Research. 2005;20:1265–74&amp;lt;/ref&amp;gt;. By inhibiting FPPS, Fosamax discourages the successive condensation of isopentenyl pyrophosphate with dimethylallyl pyrophosphate and geranyl pyrophosphate, which interferes with osteoclast function and survival &amp;lt;ref&amp;gt;Alendronic acid. (2005, June 13), from http://www.drugbank.ca/drugs/DB00630#bond-15126&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;Fisher, J. E., Rogers, M. J., Halasy, J. M., Luckman, S. P., Hughes, D. E., Masarachia, P. J., … Reszka, A. A. (1999). Alendronate mechanism of action: geranylgeraniol, an intermediate in the mevalonate pathway, prevents inhibition of osteoclast formation, bone resorption, and kinase activation in vitro. Proceedings of the National Academy of Sciences, 96(1), 133–138. doi:10.1073/pnas.96.1.133, from http://www.pnas.org/content/96/1/133.full.pdf&amp;lt;/ref&amp;gt;. [[Image:Screen Shot 2016-12-04 at 8.23.53 PM.png|thumb|right|400px|Figure 6. Relationship between bisphosphonates and osteoclasts at individual stages of cellular life.&amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;]]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Though the exact chemical mechanism by which alendronate inhibits FPPS remains unclear, nitrogen-containing bisphosphates (N-BPs) bind to the geranyl pyrophosphate/dimethylallyl &amp;lt;scene name=&#039;74/745950/Correct_ligand_binding_site/3&#039;&amp;gt;(GPP/DMAPP) substrate-binding site&amp;lt;/scene&amp;gt; (Fig. 3) and alter the secondary structure of the enzyme&amp;lt;ref&amp;gt;Kavanagh KL, Guo K, Dunford JE, Wu X, Knapp S, Ebetino FH, et al. The molecular mechanism of nitrogen-containing bisphosphonates as antiosteoporosis drugs. Proceedings of the National Academy of Sciences. 2006;103:7829–34&amp;lt;/ref&amp;gt;. Specifically, alendronate may bind to the FPPS allylic substrate-binding pocket by ligating the Magnesium ion center via phosphonate oxyanion nucleophilic attack&amp;lt;ref&amp;gt;Hosfield DJ, Zhang Y, Dougan DR, Broun A, Tari LW, Swanson RV, et al. Structural Basis for Bisphosphonate-mediated Inhibition of Isoprenoid Biosynthesis. Journal of Biological Chemistry. 2003;279:8526–9&amp;lt;/ref&amp;gt;. Phosphonate groups are stabilized by a cluster of three Mg2+ ions via oxyanion-metal cation charge interactions, as well as three FPPS-conserved aspartate residues located within two alpha helical motifs (~Asp-103, 107, and 243) that form a ligand-bisphosphonate chelate (Fig. 4)&amp;lt;ref&amp;gt;Tarshis L. C., Yan M., Poulter C. D., Sacchettini J. C. Biochemistry. 1994;33:10871–10877. [PubMed]&amp;lt;/ref&amp;gt;. N-BPs may bind to the GPP substrate-binding site because N-BPs resemble the structure of the enzyme’s natural substrates (GPP and DMAPP) and act as carbocation transition state analogs (Fig. 5). Interactions between N-BP and amino acid residues (&amp;lt;scene name=&#039;74/745950/Lys200_thr201/1&#039;&amp;gt;Thr-201 and Lys-200&amp;lt;/scene&amp;gt;) suggest that these inhibitors position nitrogen in the carbocation-binding site, then mimic the carbocation intermediate formed via substrate ionization &amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;. By acting as a transition state analog for isoprenoid biosynthesis, Fosamax effectively increases the activation energy of a regulatory/rate-determining step in the mevalonate pathway, subsequently reducing the concentration of product molecules that aid the continuous biodegradation of skeletal tissue.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== References ==&lt;br /&gt;
&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Contributors and Editors ==&lt;br /&gt;
&lt;br /&gt;
[[User:Alyssa Jewel D. Floro|Floro, Alyssa Jewel D.]] [[User:Justin Myles Kidd|Kidd, Justin M.]] [[User:Osna M. Samady|Samady, Osna M.]]&lt;/div&gt;</summary>
		<author><name>Justin Myles Kidd</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Fosamax_(alendronate_sodium)&amp;diff=2688445</id>
		<title>Fosamax (alendronate sodium)</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Fosamax_(alendronate_sodium)&amp;diff=2688445"/>
		<updated>2016-12-05T20:23:56Z</updated>

		<summary type="html">&lt;p&gt;Justin Myles Kidd: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;scene name=&#039;74/745950/Correct_ligand_binding_site/3&#039;&amp;gt;&amp;lt;/scene&amp;gt;&amp;lt;table style=&amp;quot;width:200px; border:1px solid black; float:right; &amp;quot;&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td colspan=&amp;quot;2&amp;quot;&amp;gt;&amp;lt;center&amp;gt; FOSAMAX &amp;lt;/center&amp;gt;&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td colspan=&amp;quot;2&amp;quot;&amp;gt;&amp;lt;center&amp;gt;[[Image:Fosamax.gif|thumb|center|200px|Figure 1. Fosamax prescription drug, tablet form.]]&amp;lt;/center&amp;gt;&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Formula:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;C4H13NO7P2&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Molar Mass:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;249.097 g/mol&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;INN:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Alendronic Acid&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;USAN:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Alendronate sodium&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;IUPAC:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;4-amino-1-hydroxybutylidene) bisphosphonic acid monosodium salt trihydrate&lt;br /&gt;
&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;/table&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Fosamax (Alendronate Sodium or Alendronic Acid) is a pharmaceutical drug administered as an antiresorptive therapy agent for osteodegenerative diseases such as [https://en.wikipedia.org/wiki/Osteoporosis Osteoporosis], [https://en.wikipedia.org/wiki/Paget&#039;s_disease_of_bone Paget&#039;s disease], and [https://en.wikipedia.org/wiki/Osteogenesis_imperfecta osteogenesis imperfecta]&amp;lt;ref&amp;gt;Gong Li, Altman Russ B, Klein Teri E . &amp;quot;Bisphosphonates pathway&amp;quot; Pharmacogenetics and genomics (2011). from https://www.pharmgkb.org/pathway/PA154423660&amp;lt;/ref&amp;gt;.&lt;br /&gt;
Functioning as a nitrogen-containing, second generation [https://en.wikipedia.org/wiki/Bisphosphonate bisphosphonate], Fosamax binds to [https://en.wikipedia.org/wiki/Hydroxylapatite hydroxyapatite] in bone and promotes [https://en.wikipedia.org/wiki/Apoptosis apoptosis] in [https://en.wikipedia.org/wiki/Osteoclast osteoclasts] (cells specialized in skeletal breakdown), thereby delaying the degradation of bone tissue. While incorporated in bone matrix, alendronate is not pharmacologically active, thus, it must be continuously administered to suppress osteoclasts on newly formed resorption surfaces &amp;lt;ref&amp;gt;Fosamax: Uses, Dosage &amp;amp; Side Effects - Drugs.com. (2016, November 3).Fosamax: Uses, Dosage &amp;amp; Side Effects - Drugs.com. Retrieved November 14, 2016, from https://www.drugs.com/fosamax.html&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
== History &amp;lt;ref&amp;gt;Fosamax (alendronate sodium). Fosamax New FDA Drug Approval | CenterWatch. Merck. Retrieved November 15, 2016, from http://www.centerwatch.com/drug-information/fda-approved-drugs/drug/26/fosamax-alendronate-sodium&amp;lt;/ref&amp;gt;==&lt;br /&gt;
Fosamax has been in use since September 29, 1995 after gaining [http://google2.fda.gov/search?q=fosamax&amp;amp;client=FDAgov&amp;amp;site=FDAgov&amp;amp;lr=&amp;amp;proxystylesheet=FDAgov&amp;amp;requiredfields=-archive%3AYes&amp;amp;output=xml_no_dtd&amp;amp;getfields=* Food and Drug Administration] (FDA) approval. The drug obtained FDA clearance based on data from five clinical trials, lasting two years, involving 1,827 postmenopausal women with osteoporosis in 16 different countries. The trials showed a significant increase in bone mineral density at the spine, hip, and other sites. Overall, the drug reduced the number of women with new spinal fractures by 48%, the total number of new spinal fractures by 63%, and reduced overall height loss by 35%. Today, the drug remains in circulation in caplet and liquid forms and attainable at most pharmaceutical distribution centers with an eligible prescription. &lt;br /&gt;
&lt;br /&gt;
== Side Effects &amp;lt;ref&amp;gt;Common Side Effects of Fosamax (Alendronate Sodium) Drug Center - RxList. (2015, August 26). RxList. Retrieved November 14, 2016, from  http://www.rxlist.com/fosamax-side-effects-drug-center.htm&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
Common side effects of Fosamax include gas, constipation, heartburn, diarrhea, bloating, nausea, vomiting, stomach pain, joint pain or swelling, swelling in your hands or feet, dizziness, headache, eye pain, back pain, or weakness.&lt;br /&gt;
Serious side effects of Fosamax include severe pain (joints, bone, muscle, jaw, back or heartburn), chest pain, difficulty swallowing, bloody stools, eye pain, skin blisters, and swelling of the face, tongue, or throat. &lt;br /&gt;
&lt;br /&gt;
== Structural Highlights &amp;lt;ref&amp;gt;Protein Data Bank in Europe: Bringing Structure to Biology, from http://www.ebi.ac.uk/pdbe/entry/pdb/2F89&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
As a bisphosphonate, Fosamax is a synthetic analog of [https://en.wikipedia.org/wiki/Pyrophosphate pyrophosphate], containing two protonated phosphorus oxyanions. Each oxyanion is attached to a hydroxyl group. In its drug form, sodium is bound in place of a carboxyl hydrogen. When in solution, Fosamax may form an ionic bond(s) with other metal cations such as magnesium. The central carbon is also attached to an -OH as well as a three-carbon chain leading up to an amino group (Fig. 2).&lt;br /&gt;
&amp;lt;StructureSection load=&#039;2f89&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;Crystal Structure of human FPPS in complex with a bisphosphonate.&#039; scene=&#039;&#039;&amp;gt; [[Image:Screen Shot 2016-12-04 at 3.21.51 PM.png|thumb|left|200px|Figure 2. Chemical structure of Fosamax (alendronate sodium).]] &lt;br /&gt;
[[Image:Screen Shot 2016-12-02 at 3.24.13 PM.png|thumb|left|400px|Figure 3. GPP/DMAPP ligand pocket of SPSS-alendronate complex indicated by yellow eclipse.]]&lt;br /&gt;
[[Image:Screen Shot 2016-12-02 at 3.33.04 PM.png|thumb|left|400px|Figure 4. Aspartate-Magnesium cation-phosphonate chelate within FPPS-alendronate complex. Pink sphere indicates Mg2+ ion; red indicates oxygen atom, yellow indicates phosphorous atom, blue (bond-line) indicates nitrogen, blue (ribbon) indicates alpha helix motif.]] [[Image:Screen Shot 2016-12-04 at 8.42.20 PM.png|thumb|left|500px|Figure 5. Comparison between the structure of the carbocation transition states of DMAPP and GPP to the nitrogen-containing bisphosphonate alendronate. Close similarity suggests that Fosamax acts as carbocation transition state analog of isoprenoid diphosphates &amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;.]]&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Mechanism of Action ==&lt;br /&gt;
Functioning as a nitrogen-containing, second generation bisphosphonate, Fosamax binds to hydroxyapatite in bone and promotes apoptosis in osteoclasts (cells specialized in skeletal breakdown) (Fig. 6), thus slowing the breakdown of bone&amp;lt;ref&amp;gt;Drake, Matthew T., Bart L. Clarke, and Sundeep Khosla. &amp;quot;Bisphosphonates: Mechanism of Action and Role in Clinical Practice.&amp;quot; Mayo Clinic Proceedings 83, no. 9 (2008): 1032-045. doi:10.4065/83.9.1032.&amp;lt;/ref&amp;gt;. In order to accomplish this, Fosamax inhibits [http://www.uniprot.org/uniprot/P14324 farnesyl pyrophosphate synthase] (FPPS), one of the enzymes found in the [https://en.wikipedia.org/wiki/Mevalonate_pathway mevalonic acid pathway], thereby reducing the production of isoprenoid compounds that are essential for post-translational modification of small guanosine triphosphate (GTP)-binding proteins (e.g. Rho, Rab and [https://pdb101.rcsb.org/motm/148 Ras])&amp;lt;ref&amp;gt;Luckman SP, Hughes DE, Coxon FP, Russell RGG, Rogers MJ. Nitrogen-Containing Biphosphonates Inhibit the Mevalonate Pathway and Prevent Post-Translational Prenylation of GTP-Binding Proteins, Including Ras. Journal of Bone and Mineral Research. 2005;20:1265–74&amp;lt;/ref&amp;gt;. By inhibiting FPPS, Fosamax discourages the successive condensation of isopentenyl pyrophosphate with dimethylallyl pyrophosphate and geranyl pyrophosphate, which interferes with osteoclast function and survival &amp;lt;ref&amp;gt;Alendronic acid. (2005, June 13), from http://www.drugbank.ca/drugs/DB00630#bond-15126&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;Fisher, J. E., Rogers, M. J., Halasy, J. M., Luckman, S. P., Hughes, D. E., Masarachia, P. J., … Reszka, A. A. (1999). Alendronate mechanism of action: geranylgeraniol, an intermediate in the mevalonate pathway, prevents inhibition of osteoclast formation, bone resorption, and kinase activation in vitro. Proceedings of the National Academy of Sciences, 96(1), 133–138. doi:10.1073/pnas.96.1.133, from http://www.pnas.org/content/96/1/133.full.pdf&amp;lt;/ref&amp;gt;. [[Image:Screen Shot 2016-12-04 at 8.23.53 PM.png|thumb|right|400px|Figure 6. Relationship between bisphosphonates and osteoclasts at individual stages of cellular life.&amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;]]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Though the exact chemical mechanism by which alendronate inhibits FPPS remains unclear, nitrogen-containing bisphosphates (N-BPs) bind to the geranyl pyrophosphate/dimethylallyl &amp;lt;scene name=&#039;74/745950/Correct_ligand_binding_site/3&#039;&amp;gt;(GPP/DMAPP) substrate-binding site&amp;lt;/scene&amp;gt; (Fig. 3) and alter the secondary structure of the enzyme&amp;lt;ref&amp;gt;Kavanagh KL, Guo K, Dunford JE, Wu X, Knapp S, Ebetino FH, et al. The molecular mechanism of nitrogen-containing bisphosphonates as antiosteoporosis drugs. Proceedings of the National Academy of Sciences. 2006;103:7829–34&amp;lt;/ref&amp;gt;. Specifically, alendronate may bind to the FPPS allylic substrate-binding pocket by ligating the Magnesium ion center via phosphonate oxyanion nucleophilic attack&amp;lt;ref&amp;gt;Hosfield DJ, Zhang Y, Dougan DR, Broun A, Tari LW, Swanson RV, et al. Structural Basis for Bisphosphonate-mediated Inhibition of Isoprenoid Biosynthesis. Journal of Biological Chemistry. 2003;279:8526–9&amp;lt;/ref&amp;gt;. Phosphonate groups are stabilized by a cluster of three Mg2+ ions via oxyanion-metal cation charge interactions, as well as three FPPS-conserved aspartate residues located within two alpha helical motifs (~Asp-103, 107, and 243) that form a ligand-bisphosphonate chelate (Fig. 4)&amp;lt;ref&amp;gt;Tarshis L. C., Yan M., Poulter C. D., Sacchettini J. C. Biochemistry. 1994;33:10871–10877. [PubMed]&amp;lt;/ref&amp;gt;. N-BPs may bind to the GPP substrate-binding site because N-BPs resemble the structure of the enzyme’s natural substrates (GPP and DMAPP) and act as carbocation transition state analogs (Fig. 5). Interactions between N-BP and amino acid residues (Thr-201 and Lys-200) suggest that these inhibitors position nitrogen in the carbocation-binding site, then mimic the carbocation intermediate formed via substrate ionization &amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;. By acting as a transition state analog for isoprenoid biosynthesis, Fosamax effectively increases the activation energy of a regulatory/rate-determining step in the mevalonate pathway, subsequently reducing the concentration of product molecules that aid the continuous biodegradation of skeletal tissue.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== References ==&lt;br /&gt;
&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Contributors and Editors ==&lt;br /&gt;
&lt;br /&gt;
[[User:Alyssa Jewel D. Floro|Floro, Alyssa Jewel D.]] [[User:Justin Myles Kidd|Kidd, Justin M.]] [[User:Osna M. Samady|Samady, Osna M.]]&lt;/div&gt;</summary>
		<author><name>Justin Myles Kidd</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Fosamax_(alendronate_sodium)&amp;diff=2688444</id>
		<title>Fosamax (alendronate sodium)</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Fosamax_(alendronate_sodium)&amp;diff=2688444"/>
		<updated>2016-12-05T20:22:36Z</updated>

		<summary type="html">&lt;p&gt;Justin Myles Kidd: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;scene name=&#039;74/745950/Correct_ligand_binding_site/3&#039;&amp;gt;Text To Be Displayed&amp;lt;/scene&amp;gt;&amp;lt;table style=&amp;quot;width:200px; border:1px solid black; float:right; &amp;quot;&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td colspan=&amp;quot;2&amp;quot;&amp;gt;&amp;lt;center&amp;gt; FOSAMAX &amp;lt;/center&amp;gt;&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td colspan=&amp;quot;2&amp;quot;&amp;gt;&amp;lt;center&amp;gt;[[Image:Fosamax.gif|thumb|center|200px|Figure 1. Fosamax prescription drug, tablet form.]]&amp;lt;/center&amp;gt;&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Formula:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;C4H13NO7P2&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Molar Mass:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;249.097 g/mol&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;INN:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Alendronic Acid&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;USAN:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Alendronate sodium&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;IUPAC:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;4-amino-1-hydroxybutylidene) bisphosphonic acid monosodium salt trihydrate&lt;br /&gt;
&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;/table&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Fosamax (Alendronate Sodium or Alendronic Acid) is a pharmaceutical drug administered as an antiresorptive therapy agent for osteodegenerative diseases such as [https://en.wikipedia.org/wiki/Osteoporosis Osteoporosis], [https://en.wikipedia.org/wiki/Paget&#039;s_disease_of_bone Paget&#039;s disease], and [https://en.wikipedia.org/wiki/Osteogenesis_imperfecta osteogenesis imperfecta]&amp;lt;ref&amp;gt;Gong Li, Altman Russ B, Klein Teri E . &amp;quot;Bisphosphonates pathway&amp;quot; Pharmacogenetics and genomics (2011). from https://www.pharmgkb.org/pathway/PA154423660&amp;lt;/ref&amp;gt;.&lt;br /&gt;
Functioning as a nitrogen-containing, second generation [https://en.wikipedia.org/wiki/Bisphosphonate bisphosphonate], Fosamax binds to [https://en.wikipedia.org/wiki/Hydroxylapatite hydroxyapatite] in bone and promotes [https://en.wikipedia.org/wiki/Apoptosis apoptosis] in [https://en.wikipedia.org/wiki/Osteoclast osteoclasts] (cells specialized in skeletal breakdown), thereby delaying the degradation of bone tissue. While incorporated in bone matrix, alendronate is not pharmacologically active, thus, it must be continuously administered to suppress osteoclasts on newly formed resorption surfaces &amp;lt;ref&amp;gt;Fosamax: Uses, Dosage &amp;amp; Side Effects - Drugs.com. (2016, November 3).Fosamax: Uses, Dosage &amp;amp; Side Effects - Drugs.com. Retrieved November 14, 2016, from https://www.drugs.com/fosamax.html&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
== History &amp;lt;ref&amp;gt;Fosamax (alendronate sodium). Fosamax New FDA Drug Approval | CenterWatch. Merck. Retrieved November 15, 2016, from http://www.centerwatch.com/drug-information/fda-approved-drugs/drug/26/fosamax-alendronate-sodium&amp;lt;/ref&amp;gt;==&lt;br /&gt;
Fosamax has been in use since September 29, 1995 after gaining [http://google2.fda.gov/search?q=fosamax&amp;amp;client=FDAgov&amp;amp;site=FDAgov&amp;amp;lr=&amp;amp;proxystylesheet=FDAgov&amp;amp;requiredfields=-archive%3AYes&amp;amp;output=xml_no_dtd&amp;amp;getfields=* Food and Drug Administration] (FDA) approval. The drug obtained FDA clearance based on data from five clinical trials, lasting two years, involving 1,827 postmenopausal women with osteoporosis in 16 different countries. The trials showed a significant increase in bone mineral density at the spine, hip, and other sites. Overall, the drug reduced the number of women with new spinal fractures by 48%, the total number of new spinal fractures by 63%, and reduced overall height loss by 35%. Today, the drug remains in circulation in caplet and liquid forms and attainable at most pharmaceutical distribution centers with an eligible prescription. &lt;br /&gt;
&lt;br /&gt;
== Side Effects &amp;lt;ref&amp;gt;Common Side Effects of Fosamax (Alendronate Sodium) Drug Center - RxList. (2015, August 26). RxList. Retrieved November 14, 2016, from  http://www.rxlist.com/fosamax-side-effects-drug-center.htm&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
Common side effects of Fosamax include gas, constipation, heartburn, diarrhea, bloating, nausea, vomiting, stomach pain, joint pain or swelling, swelling in your hands or feet, dizziness, headache, eye pain, back pain, or weakness.&lt;br /&gt;
Serious side effects of Fosamax include severe pain (joints, bone, muscle, jaw, back or heartburn), chest pain, difficulty swallowing, bloody stools, eye pain, skin blisters, and swelling of the face, tongue, or throat. &lt;br /&gt;
&lt;br /&gt;
== Structural Highlights &amp;lt;ref&amp;gt;Protein Data Bank in Europe: Bringing Structure to Biology, from http://www.ebi.ac.uk/pdbe/entry/pdb/2F89&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
As a bisphosphonate, Fosamax is a synthetic analog of [https://en.wikipedia.org/wiki/Pyrophosphate pyrophosphate], containing two protonated phosphorus oxyanions. Each oxyanion is attached to a hydroxyl group. In its drug form, sodium is bound in place of a carboxyl hydrogen. When in solution, Fosamax may form an ionic bond(s) with other metal cations such as magnesium. The central carbon is also attached to an -OH as well as a three-carbon chain leading up to an amino group (Fig. 2).&lt;br /&gt;
&amp;lt;StructureSection load=&#039;2f89&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;Crystal Structure of human FPPS in complex with a bisphosphonate.&#039; scene=&#039;&#039;&amp;gt; [[Image:Screen Shot 2016-12-04 at 3.21.51 PM.png|thumb|left|200px|Figure 2. Chemical structure of Fosamax (alendronate sodium).]] &lt;br /&gt;
[[Image:Screen Shot 2016-12-02 at 3.24.13 PM.png|thumb|left|400px|Figure 3. GPP/DMAPP ligand pocket of SPSS-alendronate complex indicated by yellow eclipse.]]&lt;br /&gt;
[[Image:Screen Shot 2016-12-02 at 3.33.04 PM.png|thumb|left|400px|Figure 4. Aspartate-Magnesium cation-phosphonate chelate within FPPS-alendronate complex. Pink sphere indicates Mg2+ ion; red indicates oxygen atom, yellow indicates phosphorous atom, blue (bond-line) indicates nitrogen, blue (ribbon) indicates alpha helix motif.]] [[Image:Screen Shot 2016-12-04 at 8.42.20 PM.png|thumb|left|500px|Figure 5. Comparison between the structure of the carbocation transition states of DMAPP and GPP to the nitrogen-containing bisphosphonate alendronate. Close similarity suggests that Fosamax acts as carbocation transition state analog of isoprenoid diphosphates &amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;.]]&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Mechanism of Action ==&lt;br /&gt;
Functioning as a nitrogen-containing, second generation bisphosphonate, Fosamax binds to hydroxyapatite in bone and promotes apoptosis in osteoclasts (cells specialized in skeletal breakdown) (Fig. 6), thus slowing the breakdown of bone&amp;lt;ref&amp;gt;Drake, Matthew T., Bart L. Clarke, and Sundeep Khosla. &amp;quot;Bisphosphonates: Mechanism of Action and Role in Clinical Practice.&amp;quot; Mayo Clinic Proceedings 83, no. 9 (2008): 1032-045. doi:10.4065/83.9.1032.&amp;lt;/ref&amp;gt;. In order to accomplish this, Fosamax inhibits [http://www.uniprot.org/uniprot/P14324 farnesyl pyrophosphate synthase] (FPPS), one of the enzymes found in the [https://en.wikipedia.org/wiki/Mevalonate_pathway mevalonic acid pathway], thereby reducing the production of isoprenoid compounds that are essential for post-translational modification of small guanosine triphosphate (GTP)-binding proteins (e.g. Rho, Rab and [https://pdb101.rcsb.org/motm/148 Ras])&amp;lt;ref&amp;gt;Luckman SP, Hughes DE, Coxon FP, Russell RGG, Rogers MJ. Nitrogen-Containing Biphosphonates Inhibit the Mevalonate Pathway and Prevent Post-Translational Prenylation of GTP-Binding Proteins, Including Ras. Journal of Bone and Mineral Research. 2005;20:1265–74&amp;lt;/ref&amp;gt;. By inhibiting FPPS, Fosamax discourages the successive condensation of isopentenyl pyrophosphate with dimethylallyl pyrophosphate and geranyl pyrophosphate, which interferes with osteoclast function and survival &amp;lt;ref&amp;gt;Alendronic acid. (2005, June 13), from http://www.drugbank.ca/drugs/DB00630#bond-15126&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;Fisher, J. E., Rogers, M. J., Halasy, J. M., Luckman, S. P., Hughes, D. E., Masarachia, P. J., … Reszka, A. A. (1999). Alendronate mechanism of action: geranylgeraniol, an intermediate in the mevalonate pathway, prevents inhibition of osteoclast formation, bone resorption, and kinase activation in vitro. Proceedings of the National Academy of Sciences, 96(1), 133–138. doi:10.1073/pnas.96.1.133, from http://www.pnas.org/content/96/1/133.full.pdf&amp;lt;/ref&amp;gt;. [[Image:Screen Shot 2016-12-04 at 8.23.53 PM.png|thumb|right|400px|Figure 6. Relationship between bisphosphonates and osteoclasts at individual stages of cellular life.&amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;]]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Though the exact chemical mechanism by which alendronate inhibits FPPS remains unclear, nitrogen-containing bisphosphates (N-BPs) bind to the geranyl pyrophosphate/dimethylallyl &amp;lt;scene name=&#039;74/745950/Correct_ligand_binding_site/3&#039;&amp;gt;(GPP/DMAPP) substrate-binding site&amp;lt;/scene&amp;gt; (Fig. 3) and alter the secondary structure of the enzyme&amp;lt;ref&amp;gt;Kavanagh KL, Guo K, Dunford JE, Wu X, Knapp S, Ebetino FH, et al. The molecular mechanism of nitrogen-containing bisphosphonates as antiosteoporosis drugs. Proceedings of the National Academy of Sciences. 2006;103:7829–34&amp;lt;/ref&amp;gt;. Specifically, alendronate may bind to the FPPS allylic substrate-binding pocket by ligating the Magnesium ion center via phosphonate oxyanion nucleophilic attack&amp;lt;ref&amp;gt;Hosfield DJ, Zhang Y, Dougan DR, Broun A, Tari LW, Swanson RV, et al. Structural Basis for Bisphosphonate-mediated Inhibition of Isoprenoid Biosynthesis. Journal of Biological Chemistry. 2003;279:8526–9&amp;lt;/ref&amp;gt;. Phosphonate groups are stabilized by a cluster of three Mg2+ ions via oxyanion-metal cation charge interactions, as well as three FPPS-conserved aspartate residues located within two alpha helical motifs (~Asp-103, 107, and 243) that form a ligand-bisphosphonate chelate (Fig. 4)&amp;lt;ref&amp;gt;Tarshis L. C., Yan M., Poulter C. D., Sacchettini J. C. Biochemistry. 1994;33:10871–10877. [PubMed]&amp;lt;/ref&amp;gt;. N-BPs may bind to the GPP substrate-binding site because N-BPs resemble the structure of the enzyme’s natural substrates (GPP and DMAPP) and act as carbocation transition state analogs (Fig. 5). Interactions between N-BP and amino acid residues (Thr-201 and Lys-200) suggest that these inhibitors position nitrogen in the carbocation-binding site, then mimic the carbocation intermediate formed via substrate ionization &amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;. By acting as a transition state analog for isoprenoid biosynthesis, Fosamax effectively increases the activation energy of a regulatory/rate-determining step in the mevalonate pathway, subsequently reducing the concentration of product molecules that aid the continuous biodegradation of skeletal tissue.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== References ==&lt;br /&gt;
&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Contributors and Editors ==&lt;br /&gt;
&lt;br /&gt;
[[User:Alyssa Jewel D. Floro|Floro, Alyssa Jewel D.]] [[User:Justin Myles Kidd|Kidd, Justin M.]] [[User:Osna M. Samady|Samady, Osna M.]]&lt;/div&gt;</summary>
		<author><name>Justin Myles Kidd</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Fosamax_(alendronate_sodium)&amp;diff=2688433</id>
		<title>Fosamax (alendronate sodium)</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Fosamax_(alendronate_sodium)&amp;diff=2688433"/>
		<updated>2016-12-05T19:43:55Z</updated>

		<summary type="html">&lt;p&gt;Justin Myles Kidd: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;table style=&amp;quot;width:200px; border:1px solid black; float:right; &amp;quot;&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td colspan=&amp;quot;2&amp;quot;&amp;gt;&amp;lt;center&amp;gt; FOSAMAX &amp;lt;/center&amp;gt;&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td colspan=&amp;quot;2&amp;quot;&amp;gt;&amp;lt;center&amp;gt;[[Image:Fosamax.gif|thumb|center|200px|Figure 1. Fosamax prescription drug, tablet form.]]&amp;lt;/center&amp;gt;&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Formula:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;C4H13NO7P2&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Molar Mass:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;249.097 g/mol&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;INN:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Alendronic Acid&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;USAN:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Alendronate sodium&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;IUPAC:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;4-amino-1-hydroxybutylidene) bisphosphonic acid monosodium salt trihydrate&lt;br /&gt;
&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;/table&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Fosamax (Alendronate Sodium or Alendronic Acid) is a pharmaceutical drug administered as an antiresorptive therapy agent for osteodegenerative diseases such as [https://en.wikipedia.org/wiki/Osteoporosis Osteoporosis], [https://en.wikipedia.org/wiki/Paget&#039;s_disease_of_bone Paget&#039;s disease], and [https://en.wikipedia.org/wiki/Osteogenesis_imperfecta osteogenesis imperfecta]&amp;lt;ref&amp;gt;Gong Li, Altman Russ B, Klein Teri E . &amp;quot;Bisphosphonates pathway&amp;quot; Pharmacogenetics and genomics (2011). from https://www.pharmgkb.org/pathway/PA154423660&amp;lt;/ref&amp;gt;.&lt;br /&gt;
Functioning as a nitrogen-containing, second generation [https://en.wikipedia.org/wiki/Bisphosphonate bisphosphonate], Fosamax binds to [https://en.wikipedia.org/wiki/Hydroxylapatite hydroxyapatite] in bone and promotes [https://en.wikipedia.org/wiki/Apoptosis apoptosis] in [https://en.wikipedia.org/wiki/Osteoclast osteoclasts] (cells specialized in skeletal breakdown), thereby delaying the degradation of bone tissue. While incorporated in bone matrix, alendronate is not pharmacologically active, thus, it must be continuously administered to suppress osteoclasts on newly formed resorption surfaces &amp;lt;ref&amp;gt;Fosamax: Uses, Dosage &amp;amp; Side Effects - Drugs.com. (2016, November 3).Fosamax: Uses, Dosage &amp;amp; Side Effects - Drugs.com. Retrieved November 14, 2016, from https://www.drugs.com/fosamax.html&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
== History &amp;lt;ref&amp;gt;Fosamax (alendronate sodium). Fosamax New FDA Drug Approval | CenterWatch. Merck. Retrieved November 15, 2016, from http://www.centerwatch.com/drug-information/fda-approved-drugs/drug/26/fosamax-alendronate-sodium&amp;lt;/ref&amp;gt;==&lt;br /&gt;
Fosamax has been in use since September 29, 1995 after gaining [http://google2.fda.gov/search?q=fosamax&amp;amp;client=FDAgov&amp;amp;site=FDAgov&amp;amp;lr=&amp;amp;proxystylesheet=FDAgov&amp;amp;requiredfields=-archive%3AYes&amp;amp;output=xml_no_dtd&amp;amp;getfields=* Food and Drug Administration] (FDA) approval. The drug obtained FDA clearance based on data from five clinical trials, lasting two years, involving 1,827 postmenopausal women with osteoporosis in 16 different countries. The trials showed a significant increase in bone mineral density at the spine, hip, and other sites. Overall, the drug reduced the number of women with new spinal fractures by 48%, the total number of new spinal fractures by 63%, and reduced overall height loss by 35%. Today, the drug remains in circulation in caplet and liquid forms and attainable at most pharmaceutical distribution centers with an eligible prescription. &lt;br /&gt;
&lt;br /&gt;
== Side Effects &amp;lt;ref&amp;gt;Common Side Effects of Fosamax (Alendronate Sodium) Drug Center - RxList. (2015, August 26). RxList. Retrieved November 14, 2016, from  http://www.rxlist.com/fosamax-side-effects-drug-center.htm&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
Common side effects of Fosamax include gas, constipation, heartburn, diarrhea, bloating, nausea, vomiting, stomach pain, joint pain or swelling, swelling in your hands or feet, dizziness, headache, eye pain, back pain, or weakness.&lt;br /&gt;
Serious side effects of Fosamax include severe pain (joints, bone, muscle, jaw, back or heartburn), chest pain, difficulty swallowing, bloody stools, eye pain, skin blisters, and swelling of the face, tongue, or throat. &lt;br /&gt;
&lt;br /&gt;
== Structural Highlights &amp;lt;ref&amp;gt;Protein Data Bank in Europe: Bringing Structure to Biology, from http://www.ebi.ac.uk/pdbe/entry/pdb/2F89&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
As a bisphosphonate, Fosamax is a synthetic analog of [https://en.wikipedia.org/wiki/Pyrophosphate pyrophosphate], containing two protonated phosphorus oxyanions. Each oxyanion is attached to a hydroxyl group. In its drug form, sodium is bound in place of a carboxyl hydrogen. When in solution, Fosamax may form an ionic bond(s) with other metal cations such as magnesium. The central carbon is also attached to an -OH as well as a three-carbon chain leading up to an amino group (Fig. 2).&lt;br /&gt;
&amp;lt;StructureSection load=&#039;2f89&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;Crystal Structure of human FPPS in complex with a bisphosphonate.&#039; scene=&#039;&#039;&amp;gt; [[Image:Screen Shot 2016-12-04 at 3.21.51 PM.png|thumb|left|200px|Figure 2. Chemical structure of Fosamax (alendronate sodium).]] &lt;br /&gt;
[[Image:Screen Shot 2016-12-02 at 3.24.13 PM.png|thumb|left|400px|Figure 3. GPP/DMAPP ligand pocket of SPSS-alendronate complex indicated by yellow eclipse.]]&lt;br /&gt;
[[Image:Screen Shot 2016-12-02 at 3.33.04 PM.png|thumb|left|400px|Figure 4. Aspartate-Magnesium cation-phosphonate chelate within FPPS-alendronate complex. Pink sphere indicates Mg2+ ion; red indicates oxygen atom, yellow indicates phosphorous atom, blue (bond-line) indicates nitrogen, blue (ribbon) indicates alpha helix motif.]] [[Image:Screen Shot 2016-12-04 at 8.42.20 PM.png|thumb|left|500px|Figure 5. Comparison between the structure of the carbocation transition states of DMAPP and GPP to the nitrogen-containing bisphosphonate alendronate. Close similarity suggests that Fosamax acts as carbocation transition state analog of isoprenoid diphosphates &amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;.]]&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Mechanism of Action ==&lt;br /&gt;
Functioning as a nitrogen-containing, second generation bisphosphonate, Fosamax binds to hydroxyapatite in bone and promotes apoptosis in osteoclasts (cells specialized in skeletal breakdown) (Fig. 6), thus slowing the breakdown of bone&amp;lt;ref&amp;gt;Drake, Matthew T., Bart L. Clarke, and Sundeep Khosla. &amp;quot;Bisphosphonates: Mechanism of Action and Role in Clinical Practice.&amp;quot; Mayo Clinic Proceedings 83, no. 9 (2008): 1032-045. doi:10.4065/83.9.1032.&amp;lt;/ref&amp;gt;. In order to accomplish this, Fosamax inhibits [http://www.uniprot.org/uniprot/P14324 farnesyl pyrophosphate synthase] (FPPS), one of the enzymes found in the [https://en.wikipedia.org/wiki/Mevalonate_pathway mevalonic acid pathway], thereby reducing the production of isoprenoid compounds that are essential for post-translational modification of small guanosine triphosphate (GTP)-binding proteins (e.g. Rho, Rab and [https://pdb101.rcsb.org/motm/148 Ras])&amp;lt;ref&amp;gt;Luckman SP, Hughes DE, Coxon FP, Russell RGG, Rogers MJ. Nitrogen-Containing Biphosphonates Inhibit the Mevalonate Pathway and Prevent Post-Translational Prenylation of GTP-Binding Proteins, Including Ras. Journal of Bone and Mineral Research. 2005;20:1265–74&amp;lt;/ref&amp;gt;. By inhibiting FPPS, Fosamax discourages the successive condensation of isopentenyl pyrophosphate with dimethylallyl pyrophosphate and geranyl pyrophosphate, which interferes with osteoclast function and survival &amp;lt;ref&amp;gt;Alendronic acid. (2005, June 13), from http://www.drugbank.ca/drugs/DB00630#bond-15126&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;Fisher, J. E., Rogers, M. J., Halasy, J. M., Luckman, S. P., Hughes, D. E., Masarachia, P. J., … Reszka, A. A. (1999). Alendronate mechanism of action: geranylgeraniol, an intermediate in the mevalonate pathway, prevents inhibition of osteoclast formation, bone resorption, and kinase activation in vitro. Proceedings of the National Academy of Sciences, 96(1), 133–138. doi:10.1073/pnas.96.1.133, from http://www.pnas.org/content/96/1/133.full.pdf&amp;lt;/ref&amp;gt;. [[Image:Screen Shot 2016-12-04 at 8.23.53 PM.png|thumb|right|400px|Figure 6. Relationship between bisphosphonates and osteoclasts at individual stages of cellular life.&amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;]]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Though the exact chemical mechanism by which alendronate inhibits FPPS remains unclear, nitrogen-containing bisphosphates (N-BPs) bind to the geranyl pyrophosphate/dimethylallyl &amp;lt;scene name=&#039;74/745950/Correct_ligand_binding_site/1&#039;&amp;gt;(GPP/DMAPP) substrate-binding site&amp;lt;/scene&amp;gt; (Fig. 3) and alter the secondary structure of the enzyme&amp;lt;ref&amp;gt;Kavanagh KL, Guo K, Dunford JE, Wu X, Knapp S, Ebetino FH, et al. The molecular mechanism of nitrogen-containing bisphosphonates as antiosteoporosis drugs. Proceedings of the National Academy of Sciences. 2006;103:7829–34&amp;lt;/ref&amp;gt;. Specifically, alendronate may bind to the FPPS allylic substrate-binding pocket by ligating the Magnesium ion center via phosphonate oxyanion nucleophilic attack&amp;lt;ref&amp;gt;Hosfield DJ, Zhang Y, Dougan DR, Broun A, Tari LW, Swanson RV, et al. Structural Basis for Bisphosphonate-mediated Inhibition of Isoprenoid Biosynthesis. Journal of Biological Chemistry. 2003;279:8526–9&amp;lt;/ref&amp;gt;. Phosphonate groups are stabilized by a cluster of three Mg2+ ions via oxyanion-metal cation charge interactions, as well as three FPPS-conserved aspartate residues located within two alpha helical motifs (~Asp-103, 107, and 243) that form a ligand-bisphosphonate chelate (Fig. 4)&amp;lt;ref&amp;gt;Tarshis L. C., Yan M., Poulter C. D., Sacchettini J. C. Biochemistry. 1994;33:10871–10877. [PubMed]&amp;lt;/ref&amp;gt;. N-BPs may bind to the GPP substrate-binding site because N-BPs resemble the structure of the enzyme’s natural substrates (GPP and DMAPP) and act as carbocation transition state analogs (Fig. 5). Interactions between N-BP and amino acid residues (Thr-201 and Lys-200) suggest that these inhibitors position nitrogen in the carbocation-binding site, then mimic the carbocation intermediate formed via substrate ionization &amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;. By acting as a transition state analog for isoprenoid biosynthesis, Fosamax effectively increases the activation energy of a regulatory/rate-determining step in the mevalonate pathway, subsequently reducing the concentration of product molecules that aid the continuous biodegradation of skeletal tissue.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== References ==&lt;br /&gt;
&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Contributors and Editors ==&lt;br /&gt;
&lt;br /&gt;
[[User:Alyssa Jewel D. Floro|Floro, Alyssa Jewel D.]] [[User:Justin Myles Kidd|Kidd, Justin M.]] [[User:Osna M. Samady|Samady, Osna M.]]&lt;/div&gt;</summary>
		<author><name>Justin Myles Kidd</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Fosamax_(alendronate_sodium)&amp;diff=2688399</id>
		<title>Fosamax (alendronate sodium)</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Fosamax_(alendronate_sodium)&amp;diff=2688399"/>
		<updated>2016-12-05T17:11:02Z</updated>

		<summary type="html">&lt;p&gt;Justin Myles Kidd: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;table style=&amp;quot;width:200px; border:1px solid black; float:right; &amp;quot;&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td colspan=&amp;quot;2&amp;quot;&amp;gt;&amp;lt;center&amp;gt; FOSAMAX &amp;lt;/center&amp;gt;&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td colspan=&amp;quot;2&amp;quot;&amp;gt;&amp;lt;center&amp;gt;[[Image:Fosamax.gif|thumb|center|200px|Figure 1. Fosamax prescription drug, tablet form.]]&amp;lt;/center&amp;gt;&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Formula:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;C4H13NO7P2&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Molar Mass:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;249.097 g/mol&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;INN:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Alendronic Acid&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;USAN:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Alendronate sodium&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;IUPAC:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;4-amino-1-hydroxybutylidene) bisphosphonic acid monosodium salt trihydrate&lt;br /&gt;
&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;/table&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Fosamax (Alendronate Sodium or Alendronic Acid) is a pharmaceutical drug administered as an antiresorptive therapy agent for osteodegenerative diseases such as [https://en.wikipedia.org/wiki/Osteoporosis Osteoporosis], [https://en.wikipedia.org/wiki/Paget&#039;s_disease_of_bone Paget&#039;s disease], and [https://en.wikipedia.org/wiki/Osteogenesis_imperfecta osteogenesis imperfecta]&amp;lt;ref&amp;gt;Gong Li, Altman Russ B, Klein Teri E . &amp;quot;Bisphosphonates pathway&amp;quot; Pharmacogenetics and genomics (2011). from https://www.pharmgkb.org/pathway/PA154423660&amp;lt;/ref&amp;gt;.&lt;br /&gt;
Functioning as a nitrogen-containing, second generation [https://en.wikipedia.org/wiki/Bisphosphonate bisphosphonate], Fosamax binds to [https://en.wikipedia.org/wiki/Hydroxylapatite hydroxyapatite] in bone and promotes [https://en.wikipedia.org/wiki/Apoptosis apoptosis] in [https://en.wikipedia.org/wiki/Osteoclast osteoclasts] (cells specialized in skeletal breakdown), thereby delaying the degradation of bone tissue. While incorporated in bone matrix, alendronate is not pharmacologically active, thus, it must be continuously administered to suppress osteoclasts on newly formed resorption surfaces &amp;lt;ref&amp;gt;Fosamax: Uses, Dosage &amp;amp; Side Effects - Drugs.com. (2016, November 3).Fosamax: Uses, Dosage &amp;amp; Side Effects - Drugs.com. Retrieved November 14, 2016, from https://www.drugs.com/fosamax.html&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
== History &amp;lt;ref&amp;gt;Fosamax (alendronate sodium). Fosamax New FDA Drug Approval | CenterWatch. Merck. Retrieved November 15, 2016, from http://www.centerwatch.com/drug-information/fda-approved-drugs/drug/26/fosamax-alendronate-sodium&amp;lt;/ref&amp;gt;==&lt;br /&gt;
Fosamax has been in use since September 29, 1995 after gaining [http://google2.fda.gov/search?q=fosamax&amp;amp;client=FDAgov&amp;amp;site=FDAgov&amp;amp;lr=&amp;amp;proxystylesheet=FDAgov&amp;amp;requiredfields=-archive%3AYes&amp;amp;output=xml_no_dtd&amp;amp;getfields=* Food and Drug Administration] (FDA) approval. The drug obtained FDA clearance based on data from five clinical trials, lasting two years, involving 1,827 postmenopausal women with osteoporosis in 16 different countries. The trials showed a significant increase in bone mineral density at the spine, hip, and other sites. Overall, the drug reduced the number of women with new spinal fractures by 48%, the total number of new spinal fractures by 63%, and reduced overall height loss by 35%. Today, the drug remains in circulation in caplet and liquid forms and attainable at most pharmaceutical distribution centers with an eligible prescription. &lt;br /&gt;
&lt;br /&gt;
== Side Effects &amp;lt;ref&amp;gt;Common Side Effects of Fosamax (Alendronate Sodium) Drug Center - RxList. (2015, August 26). RxList. Retrieved November 14, 2016, from  http://www.rxlist.com/fosamax-side-effects-drug-center.htm&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
Common side effects of Fosamax include gas, constipation, heartburn, diarrhea, bloating, nausea, vomiting, stomach pain, joint pain or swelling, swelling in your hands or feet, dizziness, headache, eye pain, back pain, or weakness.&lt;br /&gt;
Serious side effects of Fosamax include severe pain (joints, bone, muscle, jaw, back or heartburn), chest pain, difficulty swallowing, bloody stools, eye pain, skin blisters, and swelling of the face, tongue, or throat. &lt;br /&gt;
&lt;br /&gt;
== Structural Highlights &amp;lt;ref&amp;gt;Protein Data Bank in Europe: Bringing Structure to Biology, from http://www.ebi.ac.uk/pdbe/entry/pdb/2F89&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
As a bisphosphonate, Fosamax is a synthetic analog of [https://en.wikipedia.org/wiki/Pyrophosphate pyrophosphate], containing two protonated phosphorus oxyanions. Each oxyanion is attached to a hydroxyl group. In its drug form, sodium is bound in place of a carboxyl hydrogen. When in solution, Fosamax may form an ionic bond(s) with other metal cations such as magnesium. The central carbon is also attached to an -OH as well as a three-carbon chain leading up to an amino group (Fig. 2).&lt;br /&gt;
&amp;lt;StructureSection load=&#039;2f89&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;Crystal Structure of human FPPS in complex with a bisphosphonate.&#039; scene=&#039;&#039;&amp;gt; [[Image:Screen Shot 2016-12-04 at 3.21.51 PM.png|thumb|left|200px|Figure 2. Chemical structure of Fosamax (alendronate sodium).]] &lt;br /&gt;
[[Image:Screen Shot 2016-12-02 at 3.24.13 PM.png|thumb|left|400px|Figure 3. GPP/DMAPP ligand pocket of SPSS-alendronate complex indicated by yellow eclipse.]]&lt;br /&gt;
[[Image:Screen Shot 2016-12-02 at 3.33.04 PM.png|thumb|left|400px|Figure 4. Aspartate-Magnesium cation-phosphonate chelate within FPPS-alendronate complex. Pink sphere indicates Mg2+ ion; red indicates oxygen atom, yellow indicates phosphorous atom, blue (bond-line) indicates nitrogen, blue (ribbon) indicates alpha helix motif.]] [[Image:Screen Shot 2016-12-04 at 8.42.20 PM.png|thumb|left|500px|Figure 5. Comparison between the structure of the carbocation transition states of DMAPP and GPP to the nitrogen-containing bisphosphonate alendronate. Close similarity suggests that Fosamax acts as carbocation transition state analog of isoprenoid diphosphates &amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;.]]&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Mechanism of Action ==&lt;br /&gt;
Functioning as a nitrogen-containing, second generation bisphosphonate, Fosamax binds to hydroxyapatite in bone and promotes apoptosis in osteoclasts (cells specialized in skeletal breakdown) (Fig. 6), thus slowing the breakdown of bone&amp;lt;ref&amp;gt;Drake, Matthew T., Bart L. Clarke, and Sundeep Khosla. &amp;quot;Bisphosphonates: Mechanism of Action and Role in Clinical Practice.&amp;quot; Mayo Clinic Proceedings 83, no. 9 (2008): 1032-045. doi:10.4065/83.9.1032.&amp;lt;/ref&amp;gt;. In order to accomplish this, Fosamax inhibits [http://www.uniprot.org/uniprot/P14324 farnesyl pyrophosphate synthase] (FPPS), one of the enzymes found in the [https://en.wikipedia.org/wiki/Mevalonate_pathway mevalonic acid pathway], thereby reducing the production of isoprenoid compounds that are essential for post-translational modification of small guanosine triphosphate (GTP)-binding proteins (e.g. Rho, Rab and [https://pdb101.rcsb.org/motm/148 Ras])&amp;lt;ref&amp;gt;Luckman SP, Hughes DE, Coxon FP, Russell RGG, Rogers MJ. Nitrogen-Containing Biphosphonates Inhibit the Mevalonate Pathway and Prevent Post-Translational Prenylation of GTP-Binding Proteins, Including Ras. Journal of Bone and Mineral Research. 2005;20:1265–74&amp;lt;/ref&amp;gt;. By inhibiting FPPS, Fosamax discourages the successive condensation of isopentenyl pyrophosphate with dimethylallyl pyrophosphate and geranyl pyrophosphate, which interferes with osteoclast function and survival &amp;lt;ref&amp;gt;Alendronic acid. (2005, June 13), from http://www.drugbank.ca/drugs/DB00630#bond-15126&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;Fisher, J. E., Rogers, M. J., Halasy, J. M., Luckman, S. P., Hughes, D. E., Masarachia, P. J., … Reszka, A. A. (1999). Alendronate mechanism of action: geranylgeraniol, an intermediate in the mevalonate pathway, prevents inhibition of osteoclast formation, bone resorption, and kinase activation in vitro. Proceedings of the National Academy of Sciences, 96(1), 133–138. doi:10.1073/pnas.96.1.133, from http://www.pnas.org/content/96/1/133.full.pdf&amp;lt;/ref&amp;gt;. [[Image:Screen Shot 2016-12-04 at 8.23.53 PM.png|thumb|right|400px|Figure 6. Relationship between bisphosphonates and osteoclasts at individual stages of cellular life.&amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;]]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Though the exact chemical mechanism by which alendronate inhibits FPPS remains unclear, nitrogen-containing bisphosphates (N-BPs) bind to the geranyl pyrophosphate/dimethylallyl (GPP/DMAPP) substrate-binding site (Fig. 3) and alter the secondary structure of the enzyme&amp;lt;ref&amp;gt;Kavanagh KL, Guo K, Dunford JE, Wu X, Knapp S, Ebetino FH, et al. The molecular mechanism of nitrogen-containing bisphosphonates as antiosteoporosis drugs. Proceedings of the National Academy of Sciences. 2006;103:7829–34&amp;lt;/ref&amp;gt;. Specifically, alendronate may bind to the FPPS allylic substrate-binding pocket by ligating the Magnesium ion center via phosphonate oxyanion nucleophilic attack&amp;lt;ref&amp;gt;Hosfield DJ, Zhang Y, Dougan DR, Broun A, Tari LW, Swanson RV, et al. Structural Basis for Bisphosphonate-mediated Inhibition of Isoprenoid Biosynthesis. Journal of Biological Chemistry. 2003;279:8526–9&amp;lt;/ref&amp;gt;. Phosphonate groups are stabilized by a cluster of three Mg2+ ions via oxyanion-metal cation charge interactions, as well as three FPPS-conserved aspartate residues located within two alpha helical motifs (~Asp-103, 107, and 243) that form a ligand-bisphosphonate chelate (Fig. 4)&amp;lt;ref&amp;gt;Tarshis L. C., Yan M., Poulter C. D., Sacchettini J. C. Biochemistry. 1994;33:10871–10877. [PubMed]&amp;lt;/ref&amp;gt;. N-BPs may bind to the GPP substrate-binding site because N-BPs resemble the structure of the enzyme’s natural substrates (GPP and DMAPP) and act as carbocation transition state analogs (Fig. 5). Interactions between N-BP and amino acid residues (Thr-201 and Lys-200) suggest that these inhibitors position nitrogen in the carbocation-binding site, then mimic the carbocation intermediate formed via substrate ionization &amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;. By acting as a transition state analog for isoprenoid biosynthesis, Fosamax effectively increases the activation energy of a regulatory/rate-determining step in the mevalonate pathway, subsequently reducing the concentration of product molecules that aid the continuous biodegradation of skeletal tissue.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== References ==&lt;br /&gt;
&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Contributors and Editors ==&lt;br /&gt;
&lt;br /&gt;
[[User:Alyssa Jewel D. Floro|Floro, Alyssa Jewel D.]] [[User:Justin Myles Kidd|Kidd, Justin M.]] [[User:Osna M. Samady|Samady, Osna M.]]&lt;/div&gt;</summary>
		<author><name>Justin Myles Kidd</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Fosamax_(alendronate_sodium)&amp;diff=2688398</id>
		<title>Fosamax (alendronate sodium)</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Fosamax_(alendronate_sodium)&amp;diff=2688398"/>
		<updated>2016-12-05T16:59:53Z</updated>

		<summary type="html">&lt;p&gt;Justin Myles Kidd: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;table style=&amp;quot;width:200px; border:1px solid black; float:right; &amp;quot;&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td colspan=&amp;quot;2&amp;quot;&amp;gt;&amp;lt;center&amp;gt; FOSAMAX &amp;lt;/center&amp;gt;&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td colspan=&amp;quot;2&amp;quot;&amp;gt;&amp;lt;center&amp;gt;[[Image:Fosamax.gif|thumb|center|200px|Figure 1. Fosamax prescription drug, tablet form.]]&amp;lt;/center&amp;gt;&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Formula:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;C4H13NO7P2&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Molar Mass:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;249.097 g/mol&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;INN:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Alendronic Acid&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;USAN:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Alendronate sodium&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;IUPAC:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;4-amino-1-hydroxybutylidene) bisphosphonic acid monosodium salt trihydrate&lt;br /&gt;
&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;/table&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Fosamax (Alendronate Sodium or Alendronic Acid) is a pharmaceutical drug administered as an antiresorptive therapy agent for osteodegenerative diseases such as [https://en.wikipedia.org/wiki/Osteoporosis Osteoporosis], [https://en.wikipedia.org/wiki/Paget&#039;s_disease_of_bone Paget&#039;s disease], and [https://en.wikipedia.org/wiki/Osteogenesis_imperfecta osteogenesis imperfecta]&amp;lt;ref&amp;gt;Gong Li, Altman Russ B, Klein Teri E . &amp;quot;Bisphosphonates pathway&amp;quot; Pharmacogenetics and genomics (2011). from https://www.pharmgkb.org/pathway/PA154423660&amp;lt;/ref&amp;gt;.&lt;br /&gt;
Functioning as a nitrogen-containing, second generation [https://en.wikipedia.org/wiki/Bisphosphonate bisphosphonate], Fosamax binds to [https://en.wikipedia.org/wiki/Hydroxylapatite hydroxyapatite] in bone and promotes [https://en.wikipedia.org/wiki/Apoptosis apoptosis] in [https://en.wikipedia.org/wiki/Osteoclast osteoclasts] (cells specialized in skeletal breakdown), thereby delaying the degradation of bone tissue. While incorporated in bone matrix, alendronate is not pharmacologically active, thus, it must be continuously administered to suppress osteoclasts on newly formed resorption surfaces &amp;lt;ref&amp;gt;Fosamax: Uses, Dosage &amp;amp; Side Effects - Drugs.com. (2016, November 3).Fosamax: Uses, Dosage &amp;amp; Side Effects - Drugs.com. Retrieved November 14, 2016, from https://www.drugs.com/fosamax.html&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
== History &amp;lt;ref&amp;gt;Fosamax (alendronate sodium). Fosamax New FDA Drug Approval | CenterWatch. Merck. Retrieved November 15, 2016, from http://www.centerwatch.com/drug-information/fda-approved-drugs/drug/26/fosamax-alendronate-sodium&amp;lt;/ref&amp;gt;==&lt;br /&gt;
Fosamax has been in use since September 29, 1995 after gaining [http://www.fda.gov Food and Drug Administration] (FDA) approval. The drug obtained FDA clearance based on data from five clinical trials, lasting two years, involving 1,827 postmenopausal women with osteoporosis in 16 different countries. The trials showed a significant increase in bone mineral density at the spine, hip, and other sites. Overall, the drug reduced the number of women with new spinal fractures by 48%, the total number of new spinal fractures by 63%, and reduced overall height loss by 35%. Today, the drug remains in circulation in caplet and liquid forms and attainable at most pharmaceutical distribution centers with an eligible prescription. &lt;br /&gt;
&lt;br /&gt;
== Side Effects &amp;lt;ref&amp;gt;Common Side Effects of Fosamax (Alendronate Sodium) Drug Center - RxList. (2015, August 26). RxList. Retrieved November 14, 2016, from  http://www.rxlist.com/fosamax-side-effects-drug-center.htm&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
Common side effects of Fosamax include gas, constipation, heartburn, diarrhea, bloating, nausea, vomiting, stomach pain, joint pain or swelling, swelling in your hands or feet, dizziness, headache, eye pain, back pain, or weakness.&lt;br /&gt;
Serious side effects of Fosamax include severe pain (joints, bone, muscle, jaw, back or heartburn), chest pain, difficulty swallowing, bloody stools, eye pain, skin blisters, and swelling of the face, tongue, or throat. &lt;br /&gt;
&lt;br /&gt;
== Structural Highlights &amp;lt;ref&amp;gt;Protein Data Bank in Europe: Bringing Structure to Biology, from http://www.ebi.ac.uk/pdbe/entry/pdb/2F89&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
As a bisphosphonate, Fosamax is a synthetic analog of [https://en.wikipedia.org/wiki/Pyrophosphate pyrophosphate], containing two protonated phosphorus oxyanions. Each oxyanion is attached to a hydroxyl group. In its drug form, sodium is bound in place of a carboxyl hydrogen. When in solution, Fosamax may form an ionic bond(s) with other metal cations such as magnesium. The central carbon is also attached to an -OH as well as a three-carbon chain leading up to an amino group (Fig. 2).&lt;br /&gt;
&amp;lt;StructureSection load=&#039;2f89&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;Crystal Structure of human FPPS in complex with a bisphosphonate.&#039; scene=&#039;&#039;&amp;gt; [[Image:Screen Shot 2016-12-04 at 3.21.51 PM.png|thumb|left|200px|Figure 2. Chemical structure of Fosamax (alendronate sodium).]] &lt;br /&gt;
[[Image:Screen Shot 2016-12-02 at 3.24.13 PM.png|thumb|left|400px|Figure 3. GPP/DMAPP ligand pocket of SPSS-alendronate complex indicated by yellow eclipse.]]&lt;br /&gt;
[[Image:Screen Shot 2016-12-02 at 3.33.04 PM.png|thumb|left|400px|Figure 4. Aspartate-Magnesium cation-phosphonate chelate within FPPS-alendronate complex. Pink sphere indicates Mg2+ ion; red indicates oxygen atom, yellow indicates phosphorous atom, blue (bond-line) indicates nitrogen, blue (ribbon) indicates alpha helix motif.]] [[Image:Screen Shot 2016-12-04 at 8.42.20 PM.png|thumb|left|500px|Figure 5. Comparison between the structure of the carbocation transition states of DMAPP and GPP to the nitrogen-containing bisphosphonate alendronate. Close similarity suggests that Fosamax acts as carbocation transition state analog of isoprenoid diphosphates &amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;.]]&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Mechanism of Action ==&lt;br /&gt;
Functioning as a nitrogen-containing, second generation bisphosphonate, Fosamax binds to hydroxyapatite in bone and promotes apoptosis in osteoclasts (cells specialized in skeletal breakdown) (Fig. 6), thus slowing the breakdown of bone&amp;lt;ref&amp;gt;Drake, Matthew T., Bart L. Clarke, and Sundeep Khosla. &amp;quot;Bisphosphonates: Mechanism of Action and Role in Clinical Practice.&amp;quot; Mayo Clinic Proceedings 83, no. 9 (2008): 1032-045. doi:10.4065/83.9.1032.&amp;lt;/ref&amp;gt;. In order to accomplish this, Fosamax inhibits [http://www.uniprot.org/uniprot/P14324 farnesyl pyrophosphate synthase] (FPPS), one of the enzymes found in the [https://en.wikipedia.org/wiki/Mevalonate_pathway mevalonic acid pathway], thereby reducing the production of isoprenoid compounds that are essential for post-translational modification of small guanosine triphosphate (GTP)-binding proteins (e.g. Rho, Rab and [https://pdb101.rcsb.org/motm/148 Ras])&amp;lt;ref&amp;gt;Luckman SP, Hughes DE, Coxon FP, Russell RGG, Rogers MJ. Nitrogen-Containing Biphosphonates Inhibit the Mevalonate Pathway and Prevent Post-Translational Prenylation of GTP-Binding Proteins, Including Ras. Journal of Bone and Mineral Research. 2005;20:1265–74&amp;lt;/ref&amp;gt;. By inhibiting FPPS, Fosamax discourages the successive condensation of isopentenyl pyrophosphate with dimethylallyl pyrophosphate and geranyl pyrophosphate, which interferes with osteoclast function and survival &amp;lt;ref&amp;gt;Alendronic acid. (2005, June 13), from http://www.drugbank.ca/drugs/DB00630#bond-15126&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;Fisher, J. E., Rogers, M. J., Halasy, J. M., Luckman, S. P., Hughes, D. E., Masarachia, P. J., … Reszka, A. A. (1999). Alendronate mechanism of action: geranylgeraniol, an intermediate in the mevalonate pathway, prevents inhibition of osteoclast formation, bone resorption, and kinase activation in vitro. Proceedings of the National Academy of Sciences, 96(1), 133–138. doi:10.1073/pnas.96.1.133, from http://www.pnas.org/content/96/1/133.full.pdf&amp;lt;/ref&amp;gt;. [[Image:Screen Shot 2016-12-04 at 8.23.53 PM.png|thumb|right|400px|Figure 6. Relationship between bisphosphonates and osteoclasts at individual stages of cellular life.&amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;]]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Though the exact chemical mechanism by which alendronate inhibits FPPS remains unclear, nitrogen-containing bisphosphates (N-BPs) bind to the geranyl pyrophosphate/dimethylallyl (GPP/DMAPP) substrate-binding site (Fig. 3) and alter the secondary structure of the enzyme&amp;lt;ref&amp;gt;Kavanagh KL, Guo K, Dunford JE, Wu X, Knapp S, Ebetino FH, et al. The molecular mechanism of nitrogen-containing bisphosphonates as antiosteoporosis drugs. Proceedings of the National Academy of Sciences. 2006;103:7829–34&amp;lt;/ref&amp;gt;. Specifically, alendronate may bind to the FPPS allylic substrate-binding pocket by ligating the Magnesium ion center via phosphonate oxyanion nucleophilic attack&amp;lt;ref&amp;gt;Hosfield DJ, Zhang Y, Dougan DR, Broun A, Tari LW, Swanson RV, et al. Structural Basis for Bisphosphonate-mediated Inhibition of Isoprenoid Biosynthesis. Journal of Biological Chemistry. 2003;279:8526–9&amp;lt;/ref&amp;gt;. Phosphonate groups are stabilized by a cluster of three Mg2+ ions via oxyanion-metal cation charge interactions, as well as three FPPS-conserved aspartate residues located within two alpha helical motifs (~Asp-103, 107, and 243) that form a ligand-bisphosphonate chelate (Fig. 4)&amp;lt;ref&amp;gt;Tarshis L. C., Yan M., Poulter C. D., Sacchettini J. C. Biochemistry. 1994;33:10871–10877. [PubMed]&amp;lt;/ref&amp;gt;. N-BPs may bind to the GPP substrate-binding site because N-BPs resemble the structure of the enzyme’s natural substrates (GPP and DMAPP) and act as carbocation transition state analogs (Fig. 5). Interactions between N-BP and amino acid residues (Thr-201 and Lys-200) suggest that these inhibitors position nitrogen in the carbocation-binding site, then mimic the carbocation intermediate formed via substrate ionization &amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;. By acting as a transition state analog for isoprenoid biosynthesis, Fosamax effectively increases the activation energy of a regulatory/rate-determining step in the mevalonate pathway, subsequently reducing the concentration of product molecules that aid the continuous biodegradation of skeletal tissue.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== References ==&lt;br /&gt;
&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Contributors and Editors ==&lt;br /&gt;
&lt;br /&gt;
[[User:Alyssa Jewel D. Floro|Floro, Alyssa Jewel D.]] [[User:Justin Myles Kidd|Kidd, Justin M.]] [[User:Osna M. Samady|Samady, Osna M.]]&lt;/div&gt;</summary>
		<author><name>Justin Myles Kidd</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Fosamax_(alendronate_sodium)&amp;diff=2688336</id>
		<title>Fosamax (alendronate sodium)</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Fosamax_(alendronate_sodium)&amp;diff=2688336"/>
		<updated>2016-12-05T04:26:03Z</updated>

		<summary type="html">&lt;p&gt;Justin Myles Kidd: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;table style=&amp;quot;width:200px; border:1px solid black; float:right; &amp;quot;&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td colspan=&amp;quot;2&amp;quot;&amp;gt;&amp;lt;center&amp;gt; FOSAMAX &amp;lt;/center&amp;gt;&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td colspan=&amp;quot;2&amp;quot;&amp;gt;&amp;lt;center&amp;gt;[[Image:Fosamax.gif|thumb|center|200px|Figure 1. Fosamax prescription drug, tablet form.]]&amp;lt;/center&amp;gt;&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Formula:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;C4H13NO7P2&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Molar Mass:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;249.097 g/mol&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;INN:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Alendronic Acid&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;USAN:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Alendronate sodium&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;IUPAC:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;4-amino-1-hydroxybutylidene) bisphosphonic acid monosodium salt trihydrate&lt;br /&gt;
&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;/table&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Fosamax (Alendronate Sodium or Alendronic Acid) is a pharmaceutical drug administered as an antiresorptive therapy agent for osteodegenerative diseases such as [https://en.wikipedia.org/wiki/Osteoporosis Osteoporosis], [https://en.wikipedia.org/wiki/Paget&#039;s_disease_of_bone Paget&#039;s disease], and [https://en.wikipedia.org/wiki/Osteogenesis_imperfecta osteogenesis imperfecta]&amp;lt;ref&amp;gt;Gong Li, Altman Russ B, Klein Teri E . &amp;quot;Bisphosphonates pathway&amp;quot; Pharmacogenetics and genomics (2011). from https://www.pharmgkb.org/pathway/PA154423660&amp;lt;/ref&amp;gt;.&lt;br /&gt;
Functioning as a nitrogen-containing, second generation [https://en.wikipedia.org/wiki/Bisphosphonate bisphosphonate], Fosamax binds to [https://en.wikipedia.org/wiki/Hydroxylapatite hydroxyapatite] in bone and promotes [https://en.wikipedia.org/wiki/Apoptosis apoptosis] in [https://en.wikipedia.org/wiki/Osteoclast osteoclasts] (cells specialized in skeletal breakdown), thereby delaying the degradation of bone tissue. While incorporated in bone matrix, alendronate is not pharmacologically active, thus, it must be continuously administered to suppress osteoclasts on newly formed resorption surfaces &amp;lt;ref&amp;gt;Fosamax: Uses, Dosage &amp;amp; Side Effects - Drugs.com. (2016, November 3).Fosamax: Uses, Dosage &amp;amp; Side Effects - Drugs.com. Retrieved November 14, 2016, from https://www.drugs.com/fosamax.html&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
== History &amp;lt;ref&amp;gt;Fosamax (alendronate sodium). Fosamax New FDA Drug Approval | CenterWatch. Merck. Retrieved November 15, 2016, from http://www.centerwatch.com/drug-information/fda-approved-drugs/drug/26/fosamax-alendronate-sodium&amp;lt;/ref&amp;gt;==&lt;br /&gt;
Fosamax has been in use since September 29, 1995 after gaining [http://www.fda.gov Food and Drug Administration] (FDA) approval. The drug obtained FDA clearance based on data from five clinical trials, lasting two years, involving 1,827 postmenopausal women with osteoporosis in 16 different countries. The trials showed a significant increase in bone mineral density at the spine, hip, and other sites. Overall, the drug reduced the number of women with new spinal fractures by 48%, the total number of new spinal fractures by 63%, and reduced overall height loss by 35%. Today, the drug remains in circulation in caplet and liquid forms and attainable at most pharmaceutical distribution centers with an eligible prescription. &lt;br /&gt;
&lt;br /&gt;
== Side Effects &amp;lt;ref&amp;gt;Common Side Effects of Fosamax (Alendronate Sodium) Drug Center - RxList. (2015, August 26). RxList. Retrieved November 14, 2016, from  http://www.rxlist.com/fosamax-side-effects-drug-center.htm&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
Common side effects of Fosamax include gas, constipation, heartburn, diarrhea, bloating, nausea, vomiting, stomach pain, joint pain or swelling, swelling in your hands or feet, dizziness, headache, eye pain, back pain, or weakness.&lt;br /&gt;
Serious side effects of Fosamax include severe pain (joints, bone, muscle, jaw, back or heartburn), chest pain, difficulty swallowing, bloody stools, eye pain, skin blisters, and swelling of the face, tongue, or throat. &lt;br /&gt;
&lt;br /&gt;
== Structural Highlights &amp;lt;ref&amp;gt;Protein Data Bank in Europe: Bringing Structure to Biology, from http://www.ebi.ac.uk/pdbe/entry/pdb/2F89&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
As a bisphosphonate, Fosamax is a synthetic analog of [https://en.wikipedia.org/wiki/Pyrophosphate pyrophosphate], containing two protonated phosphorus oxyanions. Each oxyanion is attached to a hydroxyl group, and at least one hydroxyl group is bound to sodium. When in solution, Fosamax may form an ionic bond(s) with other metal cations such as magnesium. The central carbon is also attached to a hydroxyl group as well as a three-carbon chain leading up to an amino group (Fig. 2).&lt;br /&gt;
&amp;lt;StructureSection load=&#039;2f89&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;Crystal Structure of human FPPS in complex with a bisphosphonate.&#039; scene=&#039;&#039;&amp;gt; [[Image:Screen Shot 2016-12-04 at 3.21.51 PM.png|thumb|left|200px|Figure 2. Chemical structure of Fosamax (alendronate sodium).]] &lt;br /&gt;
[[Image:Screen Shot 2016-12-02 at 3.24.13 PM.png|thumb|left|400px|Figure 3. GPP/DMAPP ligand pocket of SPSS-alendronate complex indicated by yellow eclipse.]]&lt;br /&gt;
[[Image:Screen Shot 2016-12-02 at 3.33.04 PM.png|thumb|left|400px|Figure 4. Aspartate-Magnesium cation-phosphonate chelate within FPPS-alendronate complex. Pink sphere indicates Mg2+ ion; red indicates oxygen atom, yellow indicates phosphorous atom, blue (bond-line) indicates nitrogen, blue (ribbon) indicates alpha helix motif.]] [[Image:Screen Shot 2016-12-04 at 8.42.20 PM.png|thumb|left|500px|Figure 5. Comparison between the structure of the carbocation transition states of DMAPP and GPP to the nitrogen-containing bisphosphonate alendronate. Close similarity suggests that Fosamax acts as carbocation transition state analog of isoprenoid diphosphates &amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;.]]&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Mechanism of Action ==&lt;br /&gt;
Functioning as a nitrogen-containing, second generation bisphosphonate, Fosamax binds to hydroxyapatite in bone and promotes apoptosis in osteoclasts (cells specialized in skeletal breakdown) (Fig. 6), thus slowing the breakdown of bone&amp;lt;ref&amp;gt;Drake, Matthew T., Bart L. Clarke, and Sundeep Khosla. &amp;quot;Bisphosphonates: Mechanism of Action and Role in Clinical Practice.&amp;quot; Mayo Clinic Proceedings 83, no. 9 (2008): 1032-045. doi:10.4065/83.9.1032.&amp;lt;/ref&amp;gt;. In order to accomplish this, Fosamax inhibits [http://www.uniprot.org/uniprot/P14324 farnesyl pyrophosphate synthase] (FPPS), one of the enzymes found in the [https://en.wikipedia.org/wiki/Mevalonate_pathway mevalonic acid pathway], thereby reducing the production of isoprenoid compounds that are essential for post-translational modification of small guanosine triphosphate (GTP)-binding proteins (e.g. Rho, Rab and [https://pdb101.rcsb.org/motm/148 Ras])&amp;lt;ref&amp;gt;Luckman SP, Hughes DE, Coxon FP, Russell RGG, Rogers MJ. Nitrogen-Containing Biphosphonates Inhibit the Mevalonate Pathway and Prevent Post-Translational Prenylation of GTP-Binding Proteins, Including Ras. Journal of Bone and Mineral Research. 2005;20:1265–74&amp;lt;/ref&amp;gt;. By inhibiting FPPS, Fosamax discourages the successive condensation of isopentenyl pyrophosphate with dimethylallyl pyrophosphate and geranyl pyrophosphate, which interferes with osteoclast function and survival &amp;lt;ref&amp;gt;Alendronic acid. (2005, June 13), from http://www.drugbank.ca/drugs/DB00630#bond-15126&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;Fisher, J. E., Rogers, M. J., Halasy, J. M., Luckman, S. P., Hughes, D. E., Masarachia, P. J., … Reszka, A. A. (1999). Alendronate mechanism of action: geranylgeraniol, an intermediate in the mevalonate pathway, prevents inhibition of osteoclast formation, bone resorption, and kinase activation in vitro. Proceedings of the National Academy of Sciences, 96(1), 133–138. doi:10.1073/pnas.96.1.133, from http://www.pnas.org/content/96/1/133.full.pdf&amp;lt;/ref&amp;gt;. [[Image:Screen Shot 2016-12-04 at 8.23.53 PM.png|thumb|right|400px|Figure 6. Relationship between bisphosphonates and osteoclasts at individual stages of cellular life.&amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;]]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Though the exact chemical mechanism by which alendronate inhibits FPPS remains unclear, nitrogen-containing bisphosphates (N-BPs) bind to the geranyl pyrophosphate/dimethylallyl (GPP/DMAPP) substrate-binding site (Fig. 3) and alter the secondary structure of the enzyme&amp;lt;ref&amp;gt;Kavanagh KL, Guo K, Dunford JE, Wu X, Knapp S, Ebetino FH, et al. The molecular mechanism of nitrogen-containing bisphosphonates as antiosteoporosis drugs. Proceedings of the National Academy of Sciences. 2006;103:7829–34&amp;lt;/ref&amp;gt;. Specifically, alendronate may bind to the FPPS allylic substrate-binding pocket by ligating the Magnesium ion center via phosphonate oxyanion nucleophilic attack&amp;lt;ref&amp;gt;Hosfield DJ, Zhang Y, Dougan DR, Broun A, Tari LW, Swanson RV, et al. Structural Basis for Bisphosphonate-mediated Inhibition of Isoprenoid Biosynthesis. Journal of Biological Chemistry. 2003;279:8526–9&amp;lt;/ref&amp;gt;. Phosphonate groups are stabilized by a cluster of three Mg2+ ions via oxyanion-metal cation charge interactions, as well as three FPPS-conserved aspartate residues located within two alpha helical motifs (~Asp-103, 107, and 243) that form a ligand-bisphosphonate chelate (Fig. 4)&amp;lt;ref&amp;gt;Tarshis L. C., Yan M., Poulter C. D., Sacchettini J. C. Biochemistry. 1994;33:10871–10877. [PubMed]&amp;lt;/ref&amp;gt;. N-BPs may bind to the GPP substrate-binding site because N-BPs resemble the structure of the enzyme’s natural substrates (GPP and DMAPP) and act as carbocation transition state analogs (Fig. 5). Interactions between N-BP and amino acid residues (Thr-201 and Lys-200) suggest that these inhibitors position nitrogen in the carbocation-binding site, then mimic the carbocation intermediate formed via substrate ionization &amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;. By acting as a transition state analog for isoprenoid biosynthesis, Fosamax effectively increases the activation energy of a regulatory/rate-determining step in the mevalonate pathway, subsequently reducing the concentration of product molecules that aid the continuous biodegradation of skeletal tissue.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== References ==&lt;br /&gt;
&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Contributors and Editors ==&lt;br /&gt;
&lt;br /&gt;
[[User:Alyssa Jewel D. Floro|Floro, Alyssa Jewel D.]] [[User:Justin Myles Kidd|Kidd, Justin M.]] [[User:Osna M. Samady|Samady, Osna M.]]&lt;/div&gt;</summary>
		<author><name>Justin Myles Kidd</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Fosamax_(alendronate_sodium)&amp;diff=2688335</id>
		<title>Fosamax (alendronate sodium)</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Fosamax_(alendronate_sodium)&amp;diff=2688335"/>
		<updated>2016-12-05T04:24:19Z</updated>

		<summary type="html">&lt;p&gt;Justin Myles Kidd: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;table style=&amp;quot;width:200px; border:1px solid black; float:right; &amp;quot;&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td colspan=&amp;quot;2&amp;quot;&amp;gt;&amp;lt;center&amp;gt; FOSAMAX &amp;lt;/center&amp;gt;&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td colspan=&amp;quot;2&amp;quot;&amp;gt;&amp;lt;center&amp;gt;[[Image:Fosamax.gif|thumb|center|200px|Figure 1. Fosamax prescription drug, tablet form.]]&amp;lt;/center&amp;gt;&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Formula:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;C4H13NO7P2&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Molar Mass:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;249.097 g/mol&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;INN:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Alendronic Acid&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;USAN:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Alendronate sodium&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;IUPAC:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;4-amino-1-hydroxybutylidene) bisphosphonic acid monosodium salt trihydrate&lt;br /&gt;
&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;/table&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Fosamax (Alendronate Sodium or Alendronic Acid) is a pharmaceutical drug administered as an antiresorptive therapy agent for osteodegenerative diseases such as [https://en.wikipedia.org/wiki/Osteoporosis Osteoporosis], [https://en.wikipedia.org/wiki/Paget&#039;s_disease_of_bone Paget&#039;s disease], and [https://en.wikipedia.org/wiki/Osteogenesis_imperfecta osteogenesis imperfecta]&amp;lt;ref&amp;gt;Gong Li, Altman Russ B, Klein Teri E . &amp;quot;Bisphosphonates pathway&amp;quot; Pharmacogenetics and genomics (2011). from https://www.pharmgkb.org/pathway/PA154423660&amp;lt;/ref&amp;gt;.&lt;br /&gt;
Functioning as a nitrogen-containing, second generation [https://en.wikipedia.org/wiki/Bisphosphonate bisphosphonate], Fosamax binds to [https://en.wikipedia.org/wiki/Hydroxylapatite hydroxyapatite] in bone and promotes [https://en.wikipedia.org/wiki/Apoptosis apoptosis] in [https://en.wikipedia.org/wiki/Osteoclast osteoclasts] (cells specialized in skeletal breakdown), thereby delaying the degradation of bone tissue. While incorporated in bone matrix, alendronate is not pharmacologically active, thus, it must be continuously administered to suppress osteoclasts on newly formed resorption surfaces &amp;lt;ref&amp;gt;Fosamax: Uses, Dosage &amp;amp; Side Effects - Drugs.com. (2016, November 3).Fosamax: Uses, Dosage &amp;amp; Side Effects - Drugs.com. Retrieved November 14, 2016, from https://www.drugs.com/fosamax.html&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
== History &amp;lt;ref&amp;gt;Fosamax (alendronate sodium). Fosamax New FDA Drug Approval | CenterWatch. Merck. Retrieved November 15, 2016, from http://www.centerwatch.com/drug-information/fda-approved-drugs/drug/26/fosamax-alendronate-sodium&amp;lt;/ref&amp;gt;==&lt;br /&gt;
Fosamax has been in use since September 29, 1995 after gaining [http://www.fda.gov Food and Drug Administration] (FDA) approval. The drug obtained FDA clearance based on data from five clinical trials, lasting two years, involving 1,827 postmenopausal women with osteoporosis in 16 different countries. The trials showed a significant increase in bone mineral density at the spine, hip, and other sites. Overall, the drug reduced the number of women with new spinal fractures by 48%, the total number of new spinal fractures by 63%, and reduced overall height loss by 35%. Today, the drug remains in circulation in caplet and liquid forms and attainable at most pharmaceutical distribution centers with an eligible prescription. &lt;br /&gt;
&lt;br /&gt;
== Side Effects &amp;lt;ref&amp;gt;Common Side Effects of Fosamax (Alendronate Sodium) Drug Center - RxList. (2015, August 26). RxList. Retrieved November 14, 2016, from  http://www.rxlist.com/fosamax-side-effects-drug-center.htm&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
Common side effects of Fosamax include gas, constipation, heartburn, diarrhea, bloating, nausea, vomiting, stomach pain, joint pain or swelling, swelling in your hands or feet, dizziness, headache, eye pain, back pain, or weakness.&lt;br /&gt;
Serious side effects of Fosamax include severe pain (joints, bone, muscle, jaw, back or heartburn), chest pain, difficulty swallowing, bloody stools, eye pain, skin blisters, and swelling of the face, tongue, or throat. &lt;br /&gt;
&lt;br /&gt;
== Structural Highlights &amp;lt;ref&amp;gt;Protein Data Bank in Europe: Bringing Structure to Biology, from http://www.ebi.ac.uk/pdbe/entry/pdb/2F89&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
As a bisphosphonate, Fosamax is a synthetic analog of [https://en.wikipedia.org/wiki/Pyrophosphate pyrophosphate], containing two protonated phosphorus oxyanions. Each oxyanion is attached to a hydroxyl group, and at least one hydroxyl group is bound to sodium. When in solution, Fosamax may form an ionic bond(s) with other metal cations such as magnesium. The central carbon is also attached to a hydroxyl group as well as a three-carbon chain leading up to an amino group (Fig. 2).&lt;br /&gt;
&amp;lt;StructureSection load=&#039;2f89&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;Crystal Structure of human FPPS in complex with a bisphosphonate.&#039; scene=&#039;&#039;&amp;gt; [[Image:Screen Shot 2016-12-04 at 3.21.51 PM.png|thumb|left|200px|Figure 2. Chemical structure of Fosamax (alendronate sodium).]] &lt;br /&gt;
[[Image:Screen Shot 2016-12-02 at 3.24.13 PM.png|thumb|left|400px|Figure 3. GPP/DMAPP ligand pocket of SPSS-alendronate complex indicated by yellow eclipse.]]&lt;br /&gt;
[[Image:Screen Shot 2016-12-02 at 3.33.04 PM.png|thumb|left|400px|Figure 4. Aspartate-Magnesium cation-phosphonate chelate within FPPS-alendronate complex. Pink sphere indicates Mg2+ ion; red indicates oxygen atom, yellow indicates phosphorous atom, blue (bond-line) indicates nitrogen, blue (ribbon) indicates alpha helix motif.]] [[Image:Screen Shot 2016-12-04 at 8.42.20 PM.png|thumb|left|500px|Figure 5. Comparison between the structure of the carbocation transition states of DMAPP and GPP to the nitrogen-containing bisphosphonate alendronate. Close similarity suggests that Fosamax acts as carbocation transition state analog of isoprenoid diphosphates &amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;.]]&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Mechanism of Action ==&lt;br /&gt;
Functioning as a nitrogen-containing, second generation bisphosphonate, Fosamax binds to hydroxyapatite in bone and promotes apoptosis in osteoclasts (cells specialized in skeletal breakdown) (Fig. 6), thus slowing the breakdown of bone&amp;lt;ref&amp;gt;Drake, Matthew T., Bart L. Clarke, and Sundeep Khosla. &amp;quot;Bisphosphonates: Mechanism of Action and Role in Clinical Practice.&amp;quot; Mayo Clinic Proceedings 83, no. 9 (2008): 1032-045. doi:10.4065/83.9.1032.&amp;lt;/ref&amp;gt;. In order to accomplish this, Fosamax inhibits [http://www.uniprot.org/uniprot/P14324 farnesyl pyrophosphate synthase] (FPPS), one of the enzymes found in the [https://en.wikipedia.org/wiki/Mevalonate_pathway mevalonic acid pathway], thereby reducing the production of isoprenoid compounds that are essential for post-translational modification of small guanosine triphosphate (GTP)-binding proteins (e.g. Rho, Ras, and Rab)&amp;lt;ref&amp;gt;Luckman SP, Hughes DE, Coxon FP, Russell RGG, Rogers MJ. Nitrogen-Containing Biphosphonates Inhibit the Mevalonate Pathway and Prevent Post-Translational Prenylation of GTP-Binding Proteins, Including Ras. Journal of Bone and Mineral Research. 2005;20:1265–74&amp;lt;/ref&amp;gt;. By inhibiting FPPS, Fosamax discourages the successive condensation of isopentenyl pyrophosphate with dimethylallyl pyrophosphate and geranyl pyrophosphate, which interferes with osteoclast function and survival &amp;lt;ref&amp;gt;Alendronic acid. (2005, June 13), from http://www.drugbank.ca/drugs/DB00630#bond-15126&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;Fisher, J. E., Rogers, M. J., Halasy, J. M., Luckman, S. P., Hughes, D. E., Masarachia, P. J., … Reszka, A. A. (1999). Alendronate mechanism of action: geranylgeraniol, an intermediate in the mevalonate pathway, prevents inhibition of osteoclast formation, bone resorption, and kinase activation in vitro. Proceedings of the National Academy of Sciences, 96(1), 133–138. doi:10.1073/pnas.96.1.133, from http://www.pnas.org/content/96/1/133.full.pdf&amp;lt;/ref&amp;gt;. [[Image:Screen Shot 2016-12-04 at 8.23.53 PM.png|thumb|right|400px|Figure 6. Relationship between bisphosphonates and osteoclasts at individual stages of cellular life.&amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;]]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Though the exact chemical mechanism by which alendronate inhibits FPPS remains unclear, nitrogen-containing bisphosphates (N-BPs) bind to the geranyl pyrophosphate/dimethylallyl (GPP/DMAPP) substrate-binding site (Fig. 3) and alter the secondary structure of the enzyme&amp;lt;ref&amp;gt;Kavanagh KL, Guo K, Dunford JE, Wu X, Knapp S, Ebetino FH, et al. The molecular mechanism of nitrogen-containing bisphosphonates as antiosteoporosis drugs. Proceedings of the National Academy of Sciences. 2006;103:7829–34&amp;lt;/ref&amp;gt;. Specifically, alendronate may bind to the FPPS allylic substrate-binding pocket by ligating the Magnesium ion center via phosphonate oxyanion nucleophilic attack&amp;lt;ref&amp;gt;Hosfield DJ, Zhang Y, Dougan DR, Broun A, Tari LW, Swanson RV, et al. Structural Basis for Bisphosphonate-mediated Inhibition of Isoprenoid Biosynthesis. Journal of Biological Chemistry. 2003;279:8526–9&amp;lt;/ref&amp;gt;. Phosphonate groups are stabilized by a cluster of three Mg2+ ions via oxyanion-metal cation charge interactions, as well as three FPPS-conserved aspartate residues located within two alpha helical motifs (~Asp-103, 107, and 243) that form a ligand-bisphosphonate chelate (Fig. 4)&amp;lt;ref&amp;gt;Tarshis L. C., Yan M., Poulter C. D., Sacchettini J. C. Biochemistry. 1994;33:10871–10877. [PubMed]&amp;lt;/ref&amp;gt;. N-BPs may bind to the GPP substrate-binding site because N-BPs resemble the structure of the enzyme’s natural substrates (GPP and DMAPP) and act as carbocation transition state analogs (Fig. 5). Interactions between N-BP and amino acid residues (Thr-201 and Lys-200) suggest that these inhibitors position nitrogen in the carbocation-binding site, then mimic the carbocation intermediate formed via substrate ionization &amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;. By acting as a transition state analog for isoprenoid biosynthesis, Fosamax effectively increases the activation energy of a regulatory/rate-determining step in the mevalonate pathway, subsequently reducing the concentration of product molecules that aid the continuous biodegradation of skeletal tissue.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== References ==&lt;br /&gt;
&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Contributors and Editors ==&lt;br /&gt;
&lt;br /&gt;
[[User:Alyssa Jewel D. Floro|Floro, Alyssa Jewel D.]] [[User:Justin Myles Kidd|Kidd, Justin M.]] [[User:Osna M. Samady|Samady, Osna M.]]&lt;/div&gt;</summary>
		<author><name>Justin Myles Kidd</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Fosamax_(alendronate_sodium)&amp;diff=2688333</id>
		<title>Fosamax (alendronate sodium)</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Fosamax_(alendronate_sodium)&amp;diff=2688333"/>
		<updated>2016-12-05T04:23:06Z</updated>

		<summary type="html">&lt;p&gt;Justin Myles Kidd: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;table style=&amp;quot;width:200px; border:1px solid black; float:right; &amp;quot;&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td colspan=&amp;quot;2&amp;quot;&amp;gt;&amp;lt;center&amp;gt; FOSAMAX &amp;lt;/center&amp;gt;&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td colspan=&amp;quot;2&amp;quot;&amp;gt;&amp;lt;center&amp;gt;[[Image:Fosamax.gif|thumb|center|200px|Figure 1. Fosamax prescription drug, tablet form.]]&amp;lt;/center&amp;gt;&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Formula:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;C4H13NO7P2&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Molar Mass:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;249.097 g/mol&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;INN:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Alendronic Acid&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;USAN:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Alendronate sodium&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;IUPAC:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;4-amino-1-hydroxybutylidene) bisphosphonic acid monosodium salt trihydrate&lt;br /&gt;
&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;/table&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Fosamax (Alendronate Sodium or Alendronic Acid) is a pharmaceutical drug administered as an antiresorptive therapy agent for osteodegenerative diseases such as [https://en.wikipedia.org/wiki/Osteoporosis Osteoporosis], [https://en.wikipedia.org/wiki/Paget&#039;s_disease_of_bone Paget&#039;s disease], and [https://en.wikipedia.org/wiki/Osteogenesis_imperfecta osteogenesis imperfecta]&amp;lt;ref&amp;gt;Gong Li, Altman Russ B, Klein Teri E . &amp;quot;Bisphosphonates pathway&amp;quot; Pharmacogenetics and genomics (2011). from https://www.pharmgkb.org/pathway/PA154423660&amp;lt;/ref&amp;gt;.&lt;br /&gt;
Functioning as a nitrogen-containing, second generation [https://en.wikipedia.org/wiki/Bisphosphonate bisphosphonate], Fosamax binds to [https://en.wikipedia.org/wiki/Hydroxylapatite hydroxyapatite] in bone and promotes [https://en.wikipedia.org/wiki/Apoptosis apoptosis] in [https://en.wikipedia.org/wiki/Osteoclast osteoclasts] (cells specialized in skeletal breakdown), thereby delaying the degradation of bone tissue. While incorporated in bone matrix, alendronate is not pharmacologically active, thus, it must be continuously administered to suppress osteoclasts on newly formed resorption surfaces &amp;lt;ref&amp;gt;Fosamax: Uses, Dosage &amp;amp; Side Effects - Drugs.com. (2016, November 3).Fosamax: Uses, Dosage &amp;amp; Side Effects - Drugs.com. Retrieved November 14, 2016, from https://www.drugs.com/fosamax.html&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
== History &amp;lt;ref&amp;gt;Fosamax (alendronate sodium). Fosamax New FDA Drug Approval | CenterWatch. Merck. Retrieved November 15, 2016, from http://www.centerwatch.com/drug-information/fda-approved-drugs/drug/26/fosamax-alendronate-sodium&amp;lt;/ref&amp;gt;==&lt;br /&gt;
Fosamax has been in use since September 29, 1995 after gaining Food and Drug Administration (FDA) approval. The drug obtained FDA clearance based on data from five clinical trials, lasting two years, involving 1,827 postmenopausal women with osteoporosis in 16 different countries. The trials showed a significant increase in bone mineral density at the spine, hip, and other sites. Overall, the drug reduced the number of women with new spinal fractures by 48%, the total number of new spinal fractures by 63%, and reduced overall height loss by 35%. Today, the drug remains in circulation in caplet and liquid forms and attainable at most pharmaceutical distribution centers with an eligible prescription. &lt;br /&gt;
&lt;br /&gt;
== Side Effects &amp;lt;ref&amp;gt;Common Side Effects of Fosamax (Alendronate Sodium) Drug Center - RxList. (2015, August 26). RxList. Retrieved November 14, 2016, from  http://www.rxlist.com/fosamax-side-effects-drug-center.htm&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
Common side effects of Fosamax include gas, constipation, heartburn, diarrhea, bloating, nausea, vomiting, stomach pain, joint pain or swelling, swelling in your hands or feet, dizziness, headache, eye pain, back pain, or weakness.&lt;br /&gt;
Serious side effects of Fosamax include severe pain (joints, bone, muscle, jaw, back or heartburn), chest pain, difficulty swallowing, bloody stools, eye pain, skin blisters, and swelling of the face, tongue, or throat. &lt;br /&gt;
&lt;br /&gt;
== Structural Highlights &amp;lt;ref&amp;gt;Protein Data Bank in Europe: Bringing Structure to Biology, from http://www.ebi.ac.uk/pdbe/entry/pdb/2F89&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
As a bisphosphonate, Fosamax is a synthetic analog of [https://en.wikipedia.org/wiki/Pyrophosphate pyrophosphate], containing two protonated phosphorus oxyanions. Each oxyanion is attached to a hydroxyl group, and at least one hydroxyl group is bound to sodium. When in solution, Fosamax may form an ionic bond(s) with other metal cations such as magnesium. The central carbon is also attached to a hydroxyl group as well as a three-carbon chain leading up to an amino group (Fig. 2).&lt;br /&gt;
&amp;lt;StructureSection load=&#039;2f89&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;Crystal Structure of human FPPS in complex with a bisphosphonate.&#039; scene=&#039;&#039;&amp;gt; [[Image:Screen Shot 2016-12-04 at 3.21.51 PM.png|thumb|left|200px|Figure 2. Chemical structure of Fosamax (alendronate sodium).]] &lt;br /&gt;
[[Image:Screen Shot 2016-12-02 at 3.24.13 PM.png|thumb|left|400px|Figure 3. GPP/DMAPP ligand pocket of SPSS-alendronate complex indicated by yellow eclipse.]]&lt;br /&gt;
[[Image:Screen Shot 2016-12-02 at 3.33.04 PM.png|thumb|left|400px|Figure 4. Aspartate-Magnesium cation-phosphonate chelate within FPPS-alendronate complex. Pink sphere indicates Mg2+ ion; red indicates oxygen atom, yellow indicates phosphorous atom, blue (bond-line) indicates nitrogen, blue (ribbon) indicates alpha helix motif.]] [[Image:Screen Shot 2016-12-04 at 8.42.20 PM.png|thumb|left|500px|Figure 5. Comparison between the structure of the carbocation transition states of DMAPP and GPP to the nitrogen-containing bisphosphonate alendronate. Close similarity suggests that Fosamax acts as carbocation transition state analog of isoprenoid diphosphates &amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;.]]&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Mechanism of Action ==&lt;br /&gt;
Functioning as a nitrogen-containing, second generation bisphosphonate, Fosamax binds to hydroxyapatite in bone and promotes apoptosis in osteoclasts (cells specialized in skeletal breakdown) (Fig. 6), thus slowing the breakdown of bone&amp;lt;ref&amp;gt;Drake, Matthew T., Bart L. Clarke, and Sundeep Khosla. &amp;quot;Bisphosphonates: Mechanism of Action and Role in Clinical Practice.&amp;quot; Mayo Clinic Proceedings 83, no. 9 (2008): 1032-045. doi:10.4065/83.9.1032.&amp;lt;/ref&amp;gt;. In order to accomplish this, Fosamax inhibits [http://www.uniprot.org/uniprot/P14324 farnesyl pyrophosphate synthase] (FPPS), one of the enzymes found in the [https://en.wikipedia.org/wiki/Mevalonate_pathway mevalonic acid pathway], thereby reducing the production of isoprenoid compounds that are essential for post-translational modification of small guanosine triphosphate (GTP)-binding proteins (e.g. Rho, Ras, and Rab)&amp;lt;ref&amp;gt;Luckman SP, Hughes DE, Coxon FP, Russell RGG, Rogers MJ. Nitrogen-Containing Biphosphonates Inhibit the Mevalonate Pathway and Prevent Post-Translational Prenylation of GTP-Binding Proteins, Including Ras. Journal of Bone and Mineral Research. 2005;20:1265–74&amp;lt;/ref&amp;gt;. By inhibiting FPPS, Fosamax discourages the successive condensation of isopentenyl pyrophosphate with dimethylallyl pyrophosphate and geranyl pyrophosphate, which interferes with osteoclast function and survival &amp;lt;ref&amp;gt;Alendronic acid. (2005, June 13), from http://www.drugbank.ca/drugs/DB00630#bond-15126&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;Fisher, J. E., Rogers, M. J., Halasy, J. M., Luckman, S. P., Hughes, D. E., Masarachia, P. J., … Reszka, A. A. (1999). Alendronate mechanism of action: geranylgeraniol, an intermediate in the mevalonate pathway, prevents inhibition of osteoclast formation, bone resorption, and kinase activation in vitro. Proceedings of the National Academy of Sciences, 96(1), 133–138. doi:10.1073/pnas.96.1.133, from http://www.pnas.org/content/96/1/133.full.pdf&amp;lt;/ref&amp;gt;. [[Image:Screen Shot 2016-12-04 at 8.23.53 PM.png|thumb|right|400px|Figure 6. Relationship between bisphosphonates and osteoclasts at individual stages of cellular life.&amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;]]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Though the exact chemical mechanism by which alendronate inhibits FPPS remains unclear, nitrogen-containing bisphosphates (N-BPs) bind to the geranyl pyrophosphate/dimethylallyl (GPP/DMAPP) substrate-binding site (Fig. 3) and alter the secondary structure of the enzyme&amp;lt;ref&amp;gt;Kavanagh KL, Guo K, Dunford JE, Wu X, Knapp S, Ebetino FH, et al. The molecular mechanism of nitrogen-containing bisphosphonates as antiosteoporosis drugs. Proceedings of the National Academy of Sciences. 2006;103:7829–34&amp;lt;/ref&amp;gt;. Specifically, alendronate may bind to the FPPS allylic substrate-binding pocket by ligating the Magnesium ion center via phosphonate oxyanion nucleophilic attack&amp;lt;ref&amp;gt;Hosfield DJ, Zhang Y, Dougan DR, Broun A, Tari LW, Swanson RV, et al. Structural Basis for Bisphosphonate-mediated Inhibition of Isoprenoid Biosynthesis. Journal of Biological Chemistry. 2003;279:8526–9&amp;lt;/ref&amp;gt;. Phosphonate groups are stabilized by a cluster of three Mg2+ ions via oxyanion-metal cation charge interactions, as well as three FPPS-conserved aspartate residues located within two alpha helical motifs (~Asp-103, 107, and 243) that form a ligand-bisphosphonate chelate (Fig. 4)&amp;lt;ref&amp;gt;Tarshis L. C., Yan M., Poulter C. D., Sacchettini J. C. Biochemistry. 1994;33:10871–10877. [PubMed]&amp;lt;/ref&amp;gt;. N-BPs may bind to the GPP substrate-binding site because N-BPs resemble the structure of the enzyme’s natural substrates (GPP and DMAPP) and act as carbocation transition state analogs (Fig. 5). Interactions between N-BP and amino acid residues (Thr-201 and Lys-200) suggest that these inhibitors position nitrogen in the carbocation-binding site, then mimic the carbocation intermediate formed via substrate ionization &amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;. By acting as a transition state analog for isoprenoid biosynthesis, Fosamax effectively increases the activation energy of a regulatory/rate-determining step in the mevalonate pathway, subsequently reducing the concentration of product molecules that aid the continuous biodegradation of skeletal tissue.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== References ==&lt;br /&gt;
&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Contributors and Editors ==&lt;br /&gt;
&lt;br /&gt;
[[User:Alyssa Jewel D. Floro|Floro, Alyssa Jewel D.]] [[User:Justin Myles Kidd|Kidd, Justin M.]] [[User:Osna M. Samady|Samady, Osna M.]]&lt;/div&gt;</summary>
		<author><name>Justin Myles Kidd</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Fosamax_(alendronate_sodium)&amp;diff=2688332</id>
		<title>Fosamax (alendronate sodium)</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Fosamax_(alendronate_sodium)&amp;diff=2688332"/>
		<updated>2016-12-05T04:22:08Z</updated>

		<summary type="html">&lt;p&gt;Justin Myles Kidd: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;table style=&amp;quot;width:200px; border:1px solid black; float:right; &amp;quot;&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td colspan=&amp;quot;2&amp;quot;&amp;gt;&amp;lt;center&amp;gt; FOSAMAX &amp;lt;/center&amp;gt;&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td colspan=&amp;quot;2&amp;quot;&amp;gt;&amp;lt;center&amp;gt;[[Image:Fosamax.gif|thumb|center|200px|Figure 1. Fosamax prescription drug, tablet form.]]&amp;lt;/center&amp;gt;&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Formula:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;C4H13NO7P2&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Molar Mass:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;249.097 g/mol&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;INN:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Alendronic Acid&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;USAN:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Alendronate sodium&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;IUPAC:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;4-amino-1-hydroxybutylidene) bisphosphonic acid monosodium salt trihydrate&lt;br /&gt;
&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;/table&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Fosamax (Alendronate Sodium or Alendronic Acid) is a pharmaceutical drug administered as an antiresorptive therapy agent for osteodegenerative diseases such as [https://en.wikipedia.org/wiki/Osteoporosis Osteoporosis], [https://en.wikipedia.org/wiki/Paget&#039;s_disease_of_bone Paget&#039;s disease], and [https://en.wikipedia.org/wiki/Osteogenesis_imperfecta osteogenesis imperfecta]&amp;lt;ref&amp;gt;Gong Li, Altman Russ B, Klein Teri E . &amp;quot;Bisphosphonates pathway&amp;quot; Pharmacogenetics and genomics (2011). from https://www.pharmgkb.org/pathway/PA154423660&amp;lt;/ref&amp;gt;.&lt;br /&gt;
Functioning as a nitrogen-containing, second generation [https://en.wikipedia.org/wiki/Bisphosphonate bisphosphonate], Fosamax binds to [https://en.wikipedia.org/wiki/Hydroxylapatite hydroxyapatite] in bone and promotes apoptosis in [https://en.wikipedia.org/wiki/Osteoclast osteoclasts] (cells specialized in skeletal breakdown), thereby delaying the degradation of bone tissue. While incorporated in bone matrix, alendronate is not pharmacologically active, thus, it must be continuously administered to suppress osteoclasts on newly formed resorption surfaces &amp;lt;ref&amp;gt;Fosamax: Uses, Dosage &amp;amp; Side Effects - Drugs.com. (2016, November 3).Fosamax: Uses, Dosage &amp;amp; Side Effects - Drugs.com. Retrieved November 14, 2016, from https://www.drugs.com/fosamax.html&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
== History &amp;lt;ref&amp;gt;Fosamax (alendronate sodium). Fosamax New FDA Drug Approval | CenterWatch. Merck. Retrieved November 15, 2016, from http://www.centerwatch.com/drug-information/fda-approved-drugs/drug/26/fosamax-alendronate-sodium&amp;lt;/ref&amp;gt;==&lt;br /&gt;
Fosamax has been in use since September 29, 1995 after gaining Food and Drug Administration (FDA) approval. The drug obtained FDA clearance based on data from five clinical trials, lasting two years, involving 1,827 postmenopausal women with osteoporosis in 16 different countries. The trials showed a significant increase in bone mineral density at the spine, hip, and other sites. Overall, the drug reduced the number of women with new spinal fractures by 48%, the total number of new spinal fractures by 63%, and reduced overall height loss by 35%. Today, the drug remains in circulation in caplet and liquid forms and attainable at most pharmaceutical distribution centers with an eligible prescription. &lt;br /&gt;
&lt;br /&gt;
== Side Effects &amp;lt;ref&amp;gt;Common Side Effects of Fosamax (Alendronate Sodium) Drug Center - RxList. (2015, August 26). RxList. Retrieved November 14, 2016, from  http://www.rxlist.com/fosamax-side-effects-drug-center.htm&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
Common side effects of Fosamax include gas, constipation, heartburn, diarrhea, bloating, nausea, vomiting, stomach pain, joint pain or swelling, swelling in your hands or feet, dizziness, headache, eye pain, back pain, or weakness.&lt;br /&gt;
Serious side effects of Fosamax include severe pain (joints, bone, muscle, jaw, back or heartburn), chest pain, difficulty swallowing, bloody stools, eye pain, skin blisters, and swelling of the face, tongue, or throat. &lt;br /&gt;
&lt;br /&gt;
== Structural Highlights &amp;lt;ref&amp;gt;Protein Data Bank in Europe: Bringing Structure to Biology, from http://www.ebi.ac.uk/pdbe/entry/pdb/2F89&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
As a bisphosphonate, Fosamax is a synthetic analog of [https://en.wikipedia.org/wiki/Pyrophosphate pyrophosphate], containing two protonated phosphorus oxyanions. Each oxyanion is attached to a hydroxyl group, and at least one hydroxyl group is bound to sodium. When in solution, Fosamax may form an ionic bond(s) with other metal cations such as magnesium. The central carbon is also attached to a hydroxyl group as well as a three-carbon chain leading up to an amino group (Fig. 2).&lt;br /&gt;
&amp;lt;StructureSection load=&#039;2f89&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;Crystal Structure of human FPPS in complex with a bisphosphonate.&#039; scene=&#039;&#039;&amp;gt; [[Image:Screen Shot 2016-12-04 at 3.21.51 PM.png|thumb|left|200px|Figure 2. Chemical structure of Fosamax (alendronate sodium).]] &lt;br /&gt;
[[Image:Screen Shot 2016-12-02 at 3.24.13 PM.png|thumb|left|400px|Figure 3. GPP/DMAPP ligand pocket of SPSS-alendronate complex indicated by yellow eclipse.]]&lt;br /&gt;
[[Image:Screen Shot 2016-12-02 at 3.33.04 PM.png|thumb|left|400px|Figure 4. Aspartate-Magnesium cation-phosphonate chelate within FPPS-alendronate complex. Pink sphere indicates Mg2+ ion; red indicates oxygen atom, yellow indicates phosphorous atom, blue (bond-line) indicates nitrogen, blue (ribbon) indicates alpha helix motif.]] [[Image:Screen Shot 2016-12-04 at 8.42.20 PM.png|thumb|left|500px|Figure 5. Comparison between the structure of the carbocation transition states of DMAPP and GPP to the nitrogen-containing bisphosphonate alendronate. Close similarity suggests that Fosamax acts as carbocation transition state analog of isoprenoid diphosphates &amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;.]]&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Mechanism of Action ==&lt;br /&gt;
Functioning as a nitrogen-containing, second generation bisphosphonate, Fosamax binds to hydroxyapatite in bone and promotes apoptosis in osteoclasts (cells specialized in skeletal breakdown) (Fig. 6), thus slowing the breakdown of bone&amp;lt;ref&amp;gt;Drake, Matthew T., Bart L. Clarke, and Sundeep Khosla. &amp;quot;Bisphosphonates: Mechanism of Action and Role in Clinical Practice.&amp;quot; Mayo Clinic Proceedings 83, no. 9 (2008): 1032-045. doi:10.4065/83.9.1032.&amp;lt;/ref&amp;gt;. In order to accomplish this, Fosamax inhibits [http://www.uniprot.org/uniprot/P14324 farnesyl pyrophosphate synthase] (FPPS), one of the enzymes found in the [https://en.wikipedia.org/wiki/Mevalonate_pathway mevalonic acid pathway], thereby reducing the production of isoprenoid compounds that are essential for post-translational modification of small guanosine triphosphate (GTP)-binding proteins (e.g. Rho, Ras, and Rab)&amp;lt;ref&amp;gt;Luckman SP, Hughes DE, Coxon FP, Russell RGG, Rogers MJ. Nitrogen-Containing Biphosphonates Inhibit the Mevalonate Pathway and Prevent Post-Translational Prenylation of GTP-Binding Proteins, Including Ras. Journal of Bone and Mineral Research. 2005;20:1265–74&amp;lt;/ref&amp;gt;. By inhibiting FPPS, Fosamax discourages the successive condensation of isopentenyl pyrophosphate with dimethylallyl pyrophosphate and geranyl pyrophosphate, which interferes with osteoclast function and survival &amp;lt;ref&amp;gt;Alendronic acid. (2005, June 13), from http://www.drugbank.ca/drugs/DB00630#bond-15126&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;Fisher, J. E., Rogers, M. J., Halasy, J. M., Luckman, S. P., Hughes, D. E., Masarachia, P. J., … Reszka, A. A. (1999). Alendronate mechanism of action: geranylgeraniol, an intermediate in the mevalonate pathway, prevents inhibition of osteoclast formation, bone resorption, and kinase activation in vitro. Proceedings of the National Academy of Sciences, 96(1), 133–138. doi:10.1073/pnas.96.1.133, from http://www.pnas.org/content/96/1/133.full.pdf&amp;lt;/ref&amp;gt;. [[Image:Screen Shot 2016-12-04 at 8.23.53 PM.png|thumb|right|400px|Figure 6. Relationship between bisphosphonates and osteoclasts at individual stages of cellular life.&amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;]]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Though the exact chemical mechanism by which alendronate inhibits FPPS remains unclear, nitrogen-containing bisphosphates (N-BPs) bind to the geranyl pyrophosphate/dimethylallyl (GPP/DMAPP) substrate-binding site (Fig. 3) and alter the secondary structure of the enzyme&amp;lt;ref&amp;gt;Kavanagh KL, Guo K, Dunford JE, Wu X, Knapp S, Ebetino FH, et al. The molecular mechanism of nitrogen-containing bisphosphonates as antiosteoporosis drugs. Proceedings of the National Academy of Sciences. 2006;103:7829–34&amp;lt;/ref&amp;gt;. Specifically, alendronate may bind to the FPPS allylic substrate-binding pocket by ligating the Magnesium ion center via phosphonate oxyanion nucleophilic attack&amp;lt;ref&amp;gt;Hosfield DJ, Zhang Y, Dougan DR, Broun A, Tari LW, Swanson RV, et al. Structural Basis for Bisphosphonate-mediated Inhibition of Isoprenoid Biosynthesis. Journal of Biological Chemistry. 2003;279:8526–9&amp;lt;/ref&amp;gt;. Phosphonate groups are stabilized by a cluster of three Mg2+ ions via oxyanion-metal cation charge interactions, as well as three FPPS-conserved aspartate residues located within two alpha helical motifs (~Asp-103, 107, and 243) that form a ligand-bisphosphonate chelate (Fig. 4)&amp;lt;ref&amp;gt;Tarshis L. C., Yan M., Poulter C. D., Sacchettini J. C. Biochemistry. 1994;33:10871–10877. [PubMed]&amp;lt;/ref&amp;gt;. N-BPs may bind to the GPP substrate-binding site because N-BPs resemble the structure of the enzyme’s natural substrates (GPP and DMAPP) and act as carbocation transition state analogs (Fig. 5). Interactions between N-BP and amino acid residues (Thr-201 and Lys-200) suggest that these inhibitors position nitrogen in the carbocation-binding site, then mimic the carbocation intermediate formed via substrate ionization &amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;. By acting as a transition state analog for isoprenoid biosynthesis, Fosamax effectively increases the activation energy of a regulatory/rate-determining step in the mevalonate pathway, subsequently reducing the concentration of product molecules that aid the continuous biodegradation of skeletal tissue.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== References ==&lt;br /&gt;
&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Contributors and Editors ==&lt;br /&gt;
&lt;br /&gt;
[[User:Alyssa Jewel D. Floro|Floro, Alyssa Jewel D.]] [[User:Justin Myles Kidd|Kidd, Justin M.]] [[User:Osna M. Samady|Samady, Osna M.]]&lt;/div&gt;</summary>
		<author><name>Justin Myles Kidd</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Fosamax_(alendronate_sodium)&amp;diff=2688331</id>
		<title>Fosamax (alendronate sodium)</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Fosamax_(alendronate_sodium)&amp;diff=2688331"/>
		<updated>2016-12-05T04:13:18Z</updated>

		<summary type="html">&lt;p&gt;Justin Myles Kidd: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;table style=&amp;quot;width:200px; border:1px solid black; float:right; &amp;quot;&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td colspan=&amp;quot;2&amp;quot;&amp;gt;&amp;lt;center&amp;gt; FOSAMAX &amp;lt;/center&amp;gt;&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td colspan=&amp;quot;2&amp;quot;&amp;gt;&amp;lt;center&amp;gt;[[Image:Fosamax.gif|thumb|center|200px|Figure 1. Fosamax prescription drug, tablet form.]]&amp;lt;/center&amp;gt;&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Formula:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;C4H13NO7P2&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Molar Mass:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;249.097 g/mol&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;INN:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Alendronic Acid&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;USAN:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Alendronate sodium&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;IUPAC:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;4-amino-1-hydroxybutylidene) bisphosphonic acid monosodium salt trihydrate&lt;br /&gt;
&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;/table&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Fosamax (Alendronate Sodium or Alendronic Acid) is a pharmaceutical drug administered as an antiresorptive therapy agent for osteodegenerative diseases such as [https://en.wikipedia.org/wiki/Osteoporosis Osteoporosis], Paget&#039;s disease, and osteogenesis imperfecta&amp;lt;ref&amp;gt;Gong Li, Altman Russ B, Klein Teri E . &amp;quot;Bisphosphonates pathway&amp;quot; Pharmacogenetics and genomics (2011). from https://www.pharmgkb.org/pathway/PA154423660&amp;lt;/ref&amp;gt;.&lt;br /&gt;
Functioning as a nitrogen-containing, second generation [https://en.wikipedia.org/wiki/Bisphosphonate bisphosphonate], Fosamax binds to [https://en.wikipedia.org/wiki/Hydroxylapatite hydroxyapatite] in bone and promotes apoptosis in [https://en.wikipedia.org/wiki/Osteoclast osteoclasts] (cells specialized in skeletal breakdown), thereby delaying the degradation of bone tissue. While incorporated in bone matrix, alendronate is not pharmacologically active, thus, it must be continuously administered to suppress osteoclasts on newly formed resorption surfaces &amp;lt;ref&amp;gt;Fosamax: Uses, Dosage &amp;amp; Side Effects - Drugs.com. (2016, November 3).Fosamax: Uses, Dosage &amp;amp; Side Effects - Drugs.com. Retrieved November 14, 2016, from https://www.drugs.com/fosamax.html&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
== History &amp;lt;ref&amp;gt;Fosamax (alendronate sodium). Fosamax New FDA Drug Approval | CenterWatch. Merck. Retrieved November 15, 2016, from http://www.centerwatch.com/drug-information/fda-approved-drugs/drug/26/fosamax-alendronate-sodium&amp;lt;/ref&amp;gt;==&lt;br /&gt;
Fosamax has been in use since September 29, 1995 after gaining Food and Drug Administration (FDA) approval. The drug obtained FDA clearance based on data from five clinical trials, lasting two years, involving 1,827 postmenopausal women with osteoporosis in 16 different countries. The trials showed a significant increase in bone mineral density at the spine, hip, and other sites. Overall, the drug reduced the number of women with new spinal fractures by 48%, the total number of new spinal fractures by 63%, and reduced overall height loss by 35%. Today, the drug remains in circulation in caplet and liquid forms and attainable at most pharmaceutical distribution centers with an eligible prescription. &lt;br /&gt;
&lt;br /&gt;
== Side Effects &amp;lt;ref&amp;gt;Common Side Effects of Fosamax (Alendronate Sodium) Drug Center - RxList. (2015, August 26). RxList. Retrieved November 14, 2016, from  http://www.rxlist.com/fosamax-side-effects-drug-center.htm&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
Common side effects of Fosamax include gas, constipation, heartburn, diarrhea, bloating, nausea, vomiting, stomach pain, joint pain or swelling, swelling in your hands or feet, dizziness, headache, eye pain, back pain, or weakness.&lt;br /&gt;
Serious side effects of Fosamax include severe pain (joints, bone, muscle, jaw, back or heartburn), chest pain, difficulty swallowing, bloody stools, eye pain, skin blisters, and swelling of the face, tongue, or throat. &lt;br /&gt;
&lt;br /&gt;
== Structural Highlights &amp;lt;ref&amp;gt;Protein Data Bank in Europe: Bringing Structure to Biology, from http://www.ebi.ac.uk/pdbe/entry/pdb/2F89&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
As a bisphosphonate, Fosamax is a synthetic analog of pyrophosphate, containing two protonated phosphorus oxyanions. Each oxyanion is attached to a hydroxyl group, and at least one hydroxyl group is bound to sodium. When in solution, Fosamax may form an ionic bond(s) with other metal cations such as magnesium. The central carbon is also attached to a hydroxyl group as well as a three-carbon chain leading up to an amino group (Fig. 2).&lt;br /&gt;
&amp;lt;StructureSection load=&#039;2f89&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;Crystal Structure of human FPPS in complex with a bisphosphonate.&#039; scene=&#039;&#039;&amp;gt; [[Image:Screen Shot 2016-12-04 at 3.21.51 PM.png|thumb|left|200px|Figure 2. Chemical structure of Fosamax (alendronate sodium).]] &lt;br /&gt;
[[Image:Screen Shot 2016-12-02 at 3.24.13 PM.png|thumb|left|400px|Figure 3. GPP/DMAPP ligand pocket of SPSS-alendronate complex indicated by yellow eclipse.]]&lt;br /&gt;
[[Image:Screen Shot 2016-12-02 at 3.33.04 PM.png|thumb|left|400px|Figure 4. Aspartate-Magnesium cation-phosphonate chelate within FPPS-alendronate complex. Pink sphere indicates Mg2+ ion; red indicates oxygen atom, yellow indicates phosphorous atom, blue (bond-line) indicates nitrogen, blue (ribbon) indicates alpha helix motif.]] [[Image:Screen Shot 2016-12-04 at 8.42.20 PM.png|thumb|left|500px|Figure 5. Comparison between the structure of the carbocation transition states of DMAPP and GPP to the nitrogen-containing bisphosphonate alendronate. Close similarity suggests that Fosamax acts as carbocation transition state analog of isoprenoid diphosphates &amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;.]]&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Mechanism of Action ==&lt;br /&gt;
Functioning as a nitrogen-containing, second generation bisphosphonate, Fosamax binds to hydroxyapatite in bone and promotes apoptosis in osteoclasts (cells specialized in skeletal breakdown) (Fig. 6), thus slowing the breakdown of bone&amp;lt;ref&amp;gt;Drake, Matthew T., Bart L. Clarke, and Sundeep Khosla. &amp;quot;Bisphosphonates: Mechanism of Action and Role in Clinical Practice.&amp;quot; Mayo Clinic Proceedings 83, no. 9 (2008): 1032-045. doi:10.4065/83.9.1032.&amp;lt;/ref&amp;gt;. In order to accomplish this, Fosamax inhibits [http://www.uniprot.org/uniprot/P14324 farnesyl pyrophosphate synthase] (FPPS), one of the enzymes found in the [https://en.wikipedia.org/wiki/Mevalonate_pathway mevalonic acid pathway], thereby reducing the production of isoprenoid compounds that are essential for post-translational modification of small guanosine triphosphate (GTP)-binding proteins (e.g. Rho, Ras, and Rab)&amp;lt;ref&amp;gt;Luckman SP, Hughes DE, Coxon FP, Russell RGG, Rogers MJ. Nitrogen-Containing Biphosphonates Inhibit the Mevalonate Pathway and Prevent Post-Translational Prenylation of GTP-Binding Proteins, Including Ras. Journal of Bone and Mineral Research. 2005;20:1265–74&amp;lt;/ref&amp;gt;. By inhibiting FPPS, Fosamax discourages the successive condensation of isopentenyl pyrophosphate with dimethylallyl pyrophosphate and geranyl pyrophosphate, which interferes with osteoclast function and survival &amp;lt;ref&amp;gt;Alendronic acid. (2005, June 13), from http://www.drugbank.ca/drugs/DB00630#bond-15126&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;Fisher, J. E., Rogers, M. J., Halasy, J. M., Luckman, S. P., Hughes, D. E., Masarachia, P. J., … Reszka, A. A. (1999). Alendronate mechanism of action: geranylgeraniol, an intermediate in the mevalonate pathway, prevents inhibition of osteoclast formation, bone resorption, and kinase activation in vitro. Proceedings of the National Academy of Sciences, 96(1), 133–138. doi:10.1073/pnas.96.1.133, from http://www.pnas.org/content/96/1/133.full.pdf&amp;lt;/ref&amp;gt;. [[Image:Screen Shot 2016-12-04 at 8.23.53 PM.png|thumb|right|400px|Figure 6. Relationship between bisphosphonates and osteoclasts at individual stages of cellular life.&amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;]]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Though the exact chemical mechanism by which alendronate inhibits FPPS remains unclear, nitrogen-containing bisphosphates (N-BPs) bind to the geranyl pyrophosphate/dimethylallyl (GPP/DMAPP) substrate-binding site (Fig. 3) and alter the secondary structure of the enzyme&amp;lt;ref&amp;gt;Kavanagh KL, Guo K, Dunford JE, Wu X, Knapp S, Ebetino FH, et al. The molecular mechanism of nitrogen-containing bisphosphonates as antiosteoporosis drugs. Proceedings of the National Academy of Sciences. 2006;103:7829–34&amp;lt;/ref&amp;gt;. Specifically, alendronate may bind to the FPPS allylic substrate-binding pocket by ligating the Magnesium ion center via phosphonate oxyanion nucleophilic attack&amp;lt;ref&amp;gt;Hosfield DJ, Zhang Y, Dougan DR, Broun A, Tari LW, Swanson RV, et al. Structural Basis for Bisphosphonate-mediated Inhibition of Isoprenoid Biosynthesis. Journal of Biological Chemistry. 2003;279:8526–9&amp;lt;/ref&amp;gt;. Phosphonate groups are stabilized by a cluster of three Mg2+ ions via oxyanion-metal cation charge interactions, as well as three FPPS-conserved aspartate residues located within two alpha helical motifs (~Asp-103, 107, and 243) that form a ligand-bisphosphonate chelate (Fig. 4)&amp;lt;ref&amp;gt;Tarshis L. C., Yan M., Poulter C. D., Sacchettini J. C. Biochemistry. 1994;33:10871–10877. [PubMed]&amp;lt;/ref&amp;gt;. N-BPs may bind to the GPP substrate-binding site because N-BPs resemble the structure of the enzyme’s natural substrates (GPP and DMAPP) and act as carbocation transition state analogs (Fig. 5). Interactions between N-BP and amino acid residues (Thr-201 and Lys-200) suggest that these inhibitors position nitrogen in the carbocation-binding site, then mimic the carbocation intermediate formed via substrate ionization &amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;. By acting as a transition state analog for isoprenoid biosynthesis, Fosamax effectively increases the activation energy of a regulatory/rate-determining step in the mevalonate pathway, subsequently reducing the concentration of product molecules that aid the continuous biodegradation of skeletal tissue.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== References ==&lt;br /&gt;
&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Contributors and Editors ==&lt;br /&gt;
&lt;br /&gt;
[[User:Alyssa Jewel D. Floro|Floro, Alyssa Jewel D.]] [[User:Justin Myles Kidd|Kidd, Justin M.]] [[User:Osna M. Samady|Samady, Osna M.]]&lt;/div&gt;</summary>
		<author><name>Justin Myles Kidd</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Fosamax_(alendronate_sodium)&amp;diff=2688326</id>
		<title>Fosamax (alendronate sodium)</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Fosamax_(alendronate_sodium)&amp;diff=2688326"/>
		<updated>2016-12-05T02:47:06Z</updated>

		<summary type="html">&lt;p&gt;Justin Myles Kidd: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;table style=&amp;quot;width:200px; border:1px solid black; float:right; &amp;quot;&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td colspan=&amp;quot;2&amp;quot;&amp;gt;&amp;lt;center&amp;gt; FOSAMAX &amp;lt;/center&amp;gt;&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td colspan=&amp;quot;2&amp;quot;&amp;gt;&amp;lt;center&amp;gt;[[Image:Fosamax.gif|thumb|center|200px|Figure 1. Fosamax prescription drug, tablet form.]]&amp;lt;/center&amp;gt;&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Formula:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;C4H13NO7P2&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Molar Mass:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;249.097 g/mol&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;INN:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Alendronic Acid&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;USAN:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Alendronate sodium&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;IUPAC:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;4-amino-1-hydroxybutylidene) bisphosphonic acid monosodium salt trihydrate&lt;br /&gt;
&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;/table&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Fosamax (Alendronate Sodium or Alendronic Acid) is a pharmaceutical drug administered as an antiresorptive therapy agent for osteodegenerative diseases such as [https://en.wikipedia.org/wiki/Osteoporosis Osteoporosis], Paget&#039;s disease, and osteogenesis imperfecta&amp;lt;ref&amp;gt;Gong Li, Altman Russ B, Klein Teri E . &amp;quot;Bisphosphonates pathway&amp;quot; Pharmacogenetics and genomics (2011). from https://www.pharmgkb.org/pathway/PA154423660&amp;lt;/ref&amp;gt;.&lt;br /&gt;
Functioning as a nitrogen-containing, second generation [https://en.wikipedia.org/wiki/Bisphosphonate bisphosphonate], Fosamax binds to [https://en.wikipedia.org/wiki/Hydroxylapatite hydroxyapatite] in bone and promotes apoptosis in [https://en.wikipedia.org/wiki/Osteoclast osteoclasts] (cells specialized in skeletal breakdown), thereby delaying the degradation of bone tissue. While incorporated in bone matrix, alendronate is not pharmacologically active, thus, it must be continuously administered to suppress osteoclasts on newly formed resorption surfaces &amp;lt;ref&amp;gt;Fosamax: Uses, Dosage &amp;amp; Side Effects - Drugs.com. (2016, November 3).Fosamax: Uses, Dosage &amp;amp; Side Effects - Drugs.com. Retrieved November 14, 2016, from https://www.drugs.com/fosamax.html&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
== History &amp;lt;ref&amp;gt;Fosamax (alendronate sodium). Fosamax New FDA Drug Approval | CenterWatch. Merck. Retrieved November 15, 2016, from http://www.centerwatch.com/drug-information/fda-approved-drugs/drug/26/fosamax-alendronate-sodium&amp;lt;/ref&amp;gt;==&lt;br /&gt;
Fosamax has been in use since September 29, 1995 after gaining Food and Drug Administration (FDA) approval. The drug obtained FDA clearance based on data from five clinical trials, lasting two years, involving 1,827 postmenopausal women with osteoporosis in 16 different countries. The trials showed a significant increase in bone mineral density at the spine, hip, and other sites. Overall, the drug reduced the number of women with new spinal fractures by 48%, the total number of new spinal fractures by 63%, and reduced overall height loss by 35%. Today, the drug remains in circulation in caplet and liquid forms and attainable at most pharmaceutical distribution centers with an eligible prescription. &lt;br /&gt;
&lt;br /&gt;
== Side Effects &amp;lt;ref&amp;gt;Common Side Effects of Fosamax (Alendronate Sodium) Drug Center - RxList. (2015, August 26). RxList. Retrieved November 14, 2016, from  http://www.rxlist.com/fosamax-side-effects-drug-center.htm&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
Common side effects of Fosamax include gas, constipation, heartburn, diarrhea, bloating, nausea, vomiting, stomach pain, joint pain or swelling, swelling in your hands or feet, dizziness, headache, eye pain, back pain, or weakness.&lt;br /&gt;
Serious side effects of Fosamax include severe pain (joints, bone, muscle, jaw, back or heartburn), chest pain, difficulty swallowing, bloody stools, eye pain, skin blisters, and swelling of the face, tongue, or throat. &lt;br /&gt;
&lt;br /&gt;
== Structural Highlights &amp;lt;ref&amp;gt;Protein Data Bank in Europe: Bringing Structure to Biology, from http://www.ebi.ac.uk/pdbe/entry/pdb/2F89&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
As a bisphosphonate, Fosamax is a synthetic analog of pyrophosphate, containing two protonated phosphorus oxyanions. Each oxyanion is attached to a hydroxyl group, and at least one hydroxyl group is bound to sodium. When in solution, Fosamax may form an ionic bond(s) with other metal cations such as magnesium. The central carbon is also attached to a hydroxyl group as well as a three-carbon chain leading up to an amino group (Fig. 2).&lt;br /&gt;
&amp;lt;StructureSection load=&#039;2f89&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;Crystal Structure of human FPPS in complex with a bisphosphonate&#039; scene=&#039;&#039;&amp;gt; [[Image:Screen Shot 2016-12-04 at 3.21.51 PM.png|thumb|left|200px|Figure 2. Chemical structure of Fosamax (alendronate sodium).]] &lt;br /&gt;
[[Image:Screen Shot 2016-12-02 at 3.24.13 PM.png|thumb|left|400px|Figure 3. GPP/DMAPP ligand pocket of SPSS-alendronate complex indicated by yellow eclipse.]]&lt;br /&gt;
[[Image:Screen Shot 2016-12-02 at 3.33.04 PM.png|thumb|left|400px|Figure 4. Aspartate-Magnesium cation-phosphonate chelate within FPPS-alendronate complex. Pink sphere indicates Mg2+ ion; red indicates oxygen atom, yellow indicates phosphorous atom, blue (bond-line) indicates nitrogen, blue (ribbon) indicates alpha helix motif.]] [[Image:Screen Shot 2016-12-04 at 8.42.20 PM.png|thumb|left|500px|Figure 5. Comparison between the structure of the carbocation transition states of DMAPP and GPP to the nitrogen-containing bisphosphonate alendronate. Close similarity suggests that Fosamax acts as carbocation transition state analog of isoprenoid diphosphates &amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;.]]&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Mechanism of Action ==&lt;br /&gt;
Functioning as a nitrogen-containing, second generation bisphosphonate, Fosamax binds to hydroxyapatite in bone and promotes apoptosis in osteoclasts (cells specialized in skeletal breakdown) (Fig. 6), thus slowing the breakdown of bone&amp;lt;ref&amp;gt;Drake, Matthew T., Bart L. Clarke, and Sundeep Khosla. &amp;quot;Bisphosphonates: Mechanism of Action and Role in Clinical Practice.&amp;quot; Mayo Clinic Proceedings 83, no. 9 (2008): 1032-045. doi:10.4065/83.9.1032.&amp;lt;/ref&amp;gt;. In order to accomplish this, Fosamax inhibits [http://www.uniprot.org/uniprot/P14324 farnesyl pyrophosphate synthase] (FPPS), one of the enzymes found in the [https://en.wikipedia.org/wiki/Mevalonate_pathway mevalonic acid pathway], thereby reducing the production of isoprenoid compounds that are essential for post-translational modification of small guanosine triphosphate (GTP)-binding proteins (e.g. Rho, Ras, and Rab)&amp;lt;ref&amp;gt;Luckman SP, Hughes DE, Coxon FP, Russell RGG, Rogers MJ. Nitrogen-Containing Biphosphonates Inhibit the Mevalonate Pathway and Prevent Post-Translational Prenylation of GTP-Binding Proteins, Including Ras. Journal of Bone and Mineral Research. 2005;20:1265–74&amp;lt;/ref&amp;gt;. By inhibiting FPPS, Fosamax discourages the successive condensation of isopentenyl pyrophosphate with dimethylallyl pyrophosphate and geranyl pyrophosphate, which interferes with osteoclast function and survival &amp;lt;ref&amp;gt;Alendronic acid. (2005, June 13), from http://www.drugbank.ca/drugs/DB00630#bond-15126&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;Fisher, J. E., Rogers, M. J., Halasy, J. M., Luckman, S. P., Hughes, D. E., Masarachia, P. J., … Reszka, A. A. (1999). Alendronate mechanism of action: geranylgeraniol, an intermediate in the mevalonate pathway, prevents inhibition of osteoclast formation, bone resorption, and kinase activation in vitro. Proceedings of the National Academy of Sciences, 96(1), 133–138. doi:10.1073/pnas.96.1.133, from http://www.pnas.org/content/96/1/133.full.pdf&amp;lt;/ref&amp;gt;. [[Image:Screen Shot 2016-12-04 at 8.23.53 PM.png|thumb|right|400px|Figure 6. Relationship between bisphosphonates and osteoclasts at individual stages of cellular life.&amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;]]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Though the exact chemical mechanism by which alendronate inhibits FPPS remains unclear, nitrogen-containing bisphosphates (N-BPs) bind to the geranyl pyrophosphate/dimethylallyl (GPP/DMAPP) substrate-binding site (Fig. 3) and alter the secondary structure of the enzyme&amp;lt;ref&amp;gt;Kavanagh KL, Guo K, Dunford JE, Wu X, Knapp S, Ebetino FH, et al. The molecular mechanism of nitrogen-containing bisphosphonates as antiosteoporosis drugs. Proceedings of the National Academy of Sciences. 2006;103:7829–34&amp;lt;/ref&amp;gt;. Specifically, alendronate may bind to the FPPS allylic substrate-binding pocket by ligating the Magnesium ion center via phosphonate oxyanion nucleophilic attack&amp;lt;ref&amp;gt;Hosfield DJ, Zhang Y, Dougan DR, Broun A, Tari LW, Swanson RV, et al. Structural Basis for Bisphosphonate-mediated Inhibition of Isoprenoid Biosynthesis. Journal of Biological Chemistry. 2003;279:8526–9&amp;lt;/ref&amp;gt;. Phosphonate groups are stabilized by a cluster of three Mg2+ ions via oxyanion-metal cation charge interactions, as well as three FPPS-conserved aspartate residues located within two alpha helical motifs (~Asp-103, 107, and 243) that form a ligand-bisphosphonate chelate (Fig. 4)&amp;lt;ref&amp;gt;Tarshis L. C., Yan M., Poulter C. D., Sacchettini J. C. Biochemistry. 1994;33:10871–10877. [PubMed]&amp;lt;/ref&amp;gt;. N-BPs may bind to the GPP substrate-binding site because N-BPs resemble the structure of the enzyme’s natural substrates (GPP and DMAPP) and act as carbocation transition state analogs (Fig. 5). Interactions between N-BP and amino acid residues (Thr-201 and Lys-200) suggest that these inhibitors position nitrogen in the carbocation-binding site, then mimic the carbocation intermediate formed via substrate ionization &amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;. By acting as a transition state analog for isoprenoid biosynthesis, Fosamax effectively increases the activation energy of a regulatory/rate-determining step in the mevalonate pathway, subsequently reducing the concentration of product molecules that aid the continuous biodegradation of skeletal tissue.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== References ==&lt;br /&gt;
&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Contributors and Editors ==&lt;br /&gt;
&lt;br /&gt;
[[User:Alyssa Jewel D. Floro|Floro, Alyssa Jewel D.]] [[User:Justin Myles Kidd|Kidd, Justin M.]] [[User:Osna M. Samady|Samady, Osna M.]]&lt;/div&gt;</summary>
		<author><name>Justin Myles Kidd</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Fosamax_(alendronate_sodium)&amp;diff=2688325</id>
		<title>Fosamax (alendronate sodium)</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Fosamax_(alendronate_sodium)&amp;diff=2688325"/>
		<updated>2016-12-05T02:45:09Z</updated>

		<summary type="html">&lt;p&gt;Justin Myles Kidd: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;table style=&amp;quot;width:200px; border:1px solid black; float:right; &amp;quot;&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td colspan=&amp;quot;2&amp;quot;&amp;gt;&amp;lt;center&amp;gt; FOSAMAX &amp;lt;/center&amp;gt;&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td colspan=&amp;quot;2&amp;quot;&amp;gt;&amp;lt;center&amp;gt;[[Image:Fosamax.gif|thumb|center|200px|Figure 1. Fosamax prescription drug, tablet form.]]&amp;lt;/center&amp;gt;&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Formula:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;C4H13NO7P2&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Molar Mass:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;249.097 g/mol&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;INN:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Alendronic Acid&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;USAN:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Alendronate sodium&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;IUPAC:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;4-amino-1-hydroxybutylidene) bisphosphonic acid monosodium salt trihydrate&lt;br /&gt;
&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;/table&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Fosamax (Alendronate Sodium or Alendronic Acid) is a pharmaceutical drug administered as an antiresorptive therapy agent for osteodegenerative diseases such as [https://en.wikipedia.org/wiki/Osteoporosis Osteoporosis], Paget&#039;s disease, and osteogenesis imperfecta&amp;lt;ref&amp;gt;Gong Li, Altman Russ B, Klein Teri E . &amp;quot;Bisphosphonates pathway&amp;quot; Pharmacogenetics and genomics (2011). from https://www.pharmgkb.org/pathway/PA154423660&amp;lt;/ref&amp;gt;.&lt;br /&gt;
Functioning as a nitrogen-containing, second generation [https://en.wikipedia.org/wiki/Bisphosphonate bisphosphonate], Fosamax binds to [https://en.wikipedia.org/wiki/Hydroxylapatite hydroxyapatite] in bone and promotes apoptosis in [https://en.wikipedia.org/wiki/Osteoclast osteoclasts] (cells specialized in skeletal breakdown), thereby delaying the degradation of bone tissue. While incorporated in bone matrix, alendronate is not pharmacologically active, thus, it must be continuously administered to suppress osteoclasts on newly formed resorption surfaces &amp;lt;ref&amp;gt;Fosamax: Uses, Dosage &amp;amp; Side Effects - Drugs.com. (2016, November 3).Fosamax: Uses, Dosage &amp;amp; Side Effects - Drugs.com. Retrieved November 14, 2016, from https://www.drugs.com/fosamax.html&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
== History &amp;lt;ref&amp;gt;Fosamax (alendronate sodium). Fosamax New FDA Drug Approval | CenterWatch. Merck. Retrieved November 15, 2016, from http://www.centerwatch.com/drug-information/fda-approved-drugs/drug/26/fosamax-alendronate-sodium&amp;lt;/ref&amp;gt;==&lt;br /&gt;
Fosamax has been in use since September 29, 1995 after gaining Food and Drug Administration (FDA) approval. The drug obtained FDA clearance based on data from five clinical trials, lasting two years, involving 1,827 postmenopausal women with osteoporosis in 16 different countries. The trials showed a significant increase in bone mineral density at the spine, hip, and other sites. Overall, the drug reduced the number of women with new spinal fractures by 48%, the total number of new spinal fractures by 63%, and reduced overall height loss by 35%. Today, the drug remains in circulation in caplet and liquid forms and attainable at most pharmaceutical distribution centers with an eligible prescription. &lt;br /&gt;
&lt;br /&gt;
== Side Effects &amp;lt;ref&amp;gt;Common Side Effects of Fosamax (Alendronate Sodium) Drug Center - RxList. (2015, August 26). RxList. Retrieved November 14, 2016, from  http://www.rxlist.com/fosamax-side-effects-drug-center.htm&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
Common side effects of Fosamax include gas, constipation, heartburn, diarrhea, bloating, nausea, vomiting, stomach pain, joint pain or swelling, swelling in your hands or feet, dizziness, headache, eye pain, back pain, or weakness.&lt;br /&gt;
Serious side effects of Fosamax include severe pain (joints, bone, muscle, jaw, back or heartburn), chest pain, difficulty swallowing, bloody stools, eye pain, skin blisters, and swelling of the face, tongue, or throat. &lt;br /&gt;
&lt;br /&gt;
== Structural Highlights &amp;lt;ref&amp;gt;Protein Data Bank in Europe: Bringing Structure to Biology, from http://www.ebi.ac.uk/pdbe/entry/pdb/2F89&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
As a bisphosphonate, Fosamax is a synthetic analog of pyrophosphate, containing two protonated phosphorus oxyanions. Each oxyanion is attached to a hydroxyl group, and at least one hydroxyl group is bound to sodium. When in solution, Fosamax may form an ionic bond(s) with other metal cations such as magnesium. The central carbon is also attached to a hydroxyl group as well as a three-carbon chain leading up to an amino group (Fig. 2).&lt;br /&gt;
&amp;lt;StructureSection load=&#039;2f89&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;Crystal Structure of human FPPS in complex with a bisphosphonate&#039; scene=&#039;&#039;&amp;gt; [[Image:Screen Shot 2016-12-04 at 3.21.51 PM.png|thumb|left|200px|Figure 2. Chemical structure of Fosamax (alendronate sodium).]] &lt;br /&gt;
[[Image:Screen Shot 2016-12-02 at 3.24.13 PM.png|thumb|left|400px|Figure 3. GPP/DMAPP ligand pocket of SPSS-alendronate complex indicated by yellow eclipse.]]&lt;br /&gt;
[[Image:Screen Shot 2016-12-02 at 3.33.04 PM.png|thumb|left|400px|Figure 4. Aspartate-Magnesium cation-phosphonate chelate within FPPS-alendronate complex. Pink sphere indicates Mg2+ ion; red indicates oxygen atom, yellow indicates phosphorous atom, blue (bond-line) indicates nitrogen, blue (ribbon) indicates alpha helix motif.]] [[Image:Screen Shot 2016-12-04 at 8.42.20 PM.png|thumb|left|500px|Figure 5. Comparison between the structure of the carbocation transition states of DMAPP and GPP to the nitrogen-containing bisphosphonate alendronate. Close similarity suggests that Fosamax acts as carbocation transition state analog of isoprenoid diphosphates &amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;.]]&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Mechanism of Action ==&lt;br /&gt;
Functioning as a nitrogen-containing, second generation bisphosphonate, Fosamax binds to hydroxyapatite in bone and promotes apoptosis in osteoclasts (cells specialized in skeletal breakdown), thus slowing the breakdown of bone (Fig. 6)&amp;lt;ref&amp;gt;Drake, Matthew T., Bart L. Clarke, and Sundeep Khosla. &amp;quot;Bisphosphonates: Mechanism of Action and Role in Clinical Practice.&amp;quot; Mayo Clinic Proceedings 83, no. 9 (2008): 1032-045. doi:10.4065/83.9.1032.&amp;lt;/ref&amp;gt;. In order to accomplish this, Fosamax inhibits [http://www.uniprot.org/uniprot/P14324 farnesyl pyrophosphate synthase] (FPPS), one of the enzymes found in the [https://en.wikipedia.org/wiki/Mevalonate_pathway mevalonic acid pathway], thereby reducing the production of isoprenoid compounds that are essential for post-translational modification of small guanosine triphosphate (GTP)-binding proteins (e.g. Rho, Ras, and Rab)&amp;lt;ref&amp;gt;Luckman SP, Hughes DE, Coxon FP, Russell RGG, Rogers MJ. Nitrogen-Containing Biphosphonates Inhibit the Mevalonate Pathway and Prevent Post-Translational Prenylation of GTP-Binding Proteins, Including Ras. Journal of Bone and Mineral Research. 2005;20:1265–74&amp;lt;/ref&amp;gt;. By inhibiting FPPS, Fosamax discourages the successive condensation of isopentenyl pyrophosphate with dimethylallyl pyrophosphate and geranyl pyrophosphate, which interferes with osteoclast function and survival &amp;lt;ref&amp;gt;Alendronic acid. (2005, June 13), from http://www.drugbank.ca/drugs/DB00630#bond-15126&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;Fisher, J. E., Rogers, M. J., Halasy, J. M., Luckman, S. P., Hughes, D. E., Masarachia, P. J., … Reszka, A. A. (1999). Alendronate mechanism of action: geranylgeraniol, an intermediate in the mevalonate pathway, prevents inhibition of osteoclast formation, bone resorption, and kinase activation in vitro. Proceedings of the National Academy of Sciences, 96(1), 133–138. doi:10.1073/pnas.96.1.133, from http://www.pnas.org/content/96/1/133.full.pdf&amp;lt;/ref&amp;gt;. [[Image:Screen Shot 2016-12-04 at 8.23.53 PM.png|thumb|right|400px|Figure 6. Relationship between bisphosphonates and osteoclasts at individual stages of cellular life.&amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;]]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Though the exact chemical mechanism by which alendronate inhibits FPPS remains unclear, nitrogen-containing bisphosphates (N-BPs) bind to the geranyl pyrophosphate/dimethylallyl (GPP/DMAPP) substrate-binding site (Fig. 3) and alter the secondary structure of the enzyme&amp;lt;ref&amp;gt;Kavanagh KL, Guo K, Dunford JE, Wu X, Knapp S, Ebetino FH, et al. The molecular mechanism of nitrogen-containing bisphosphonates as antiosteoporosis drugs. Proceedings of the National Academy of Sciences. 2006;103:7829–34&amp;lt;/ref&amp;gt;. Specifically, alendronate may bind to the FPPS allylic substrate-binding pocket by ligating the Magnesium ion center via phosphonate oxyanion nucleophilic attack&amp;lt;ref&amp;gt;Hosfield DJ, Zhang Y, Dougan DR, Broun A, Tari LW, Swanson RV, et al. Structural Basis for Bisphosphonate-mediated Inhibition of Isoprenoid Biosynthesis. Journal of Biological Chemistry. 2003;279:8526–9&amp;lt;/ref&amp;gt;. Phosphonate groups are stabilized by a cluster of three Mg2+ ions via oxyanion-metal cation charge interactions, as well as three FPPS-conserved aspartate residues located within two alpha helical motifs (~Asp-103, 107, and 243) that form a ligand-bisphosphonate chelate (Fig. 4)&amp;lt;ref&amp;gt;Tarshis L. C., Yan M., Poulter C. D., Sacchettini J. C. Biochemistry. 1994;33:10871–10877. [PubMed]&amp;lt;/ref&amp;gt;. N-BPs may bind to the GPP substrate-binding site because N-BPs resemble the structure of the enzyme’s natural substrates (GPP and DMAPP) and act as carbocation transition state analogs (Fig. 5). Interactions between N-BP and amino acid residues (Thr-201 and Lys-200) suggest that these inhibitors position nitrogen in the carbocation-binding site, then mimic the carbocation intermediate formed via substrate ionization &amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;. By acting as a transition state analog for isoprenoid biosynthesis, Fosamax effectively increases the activation energy of a regulatory/rate-determining step in the mevalonate pathway, subsequently reducing the concentration of product molecules that aid the continuous biodegradation of skeletal tissue.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== References ==&lt;br /&gt;
&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Contributors and Editors ==&lt;br /&gt;
&lt;br /&gt;
[[User:Alyssa Jewel D. Floro|Floro, Alyssa Jewel D.]] [[User:Justin Myles Kidd|Kidd, Justin M.]] [[User:Osna M. Samady|Samady, Osna M.]]&lt;/div&gt;</summary>
		<author><name>Justin Myles Kidd</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Fosamax_(alendronate_sodium)&amp;diff=2688324</id>
		<title>Fosamax (alendronate sodium)</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Fosamax_(alendronate_sodium)&amp;diff=2688324"/>
		<updated>2016-12-05T02:42:30Z</updated>

		<summary type="html">&lt;p&gt;Justin Myles Kidd: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;table style=&amp;quot;width:200px; border:1px solid black; float:right; &amp;quot;&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td colspan=&amp;quot;2&amp;quot;&amp;gt;&amp;lt;center&amp;gt; FOSAMAX &amp;lt;/center&amp;gt;&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td colspan=&amp;quot;2&amp;quot;&amp;gt;&amp;lt;center&amp;gt;[[Image:Fosamax.gif|thumb|center|200px|Figure 1. Fosamax prescription drug, tablet form.]]&amp;lt;/center&amp;gt;&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Formula:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;C4H13NO7P2&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Molar Mass:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;249.097 g/mol&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;INN:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Alendronic Acid&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;USAN:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;Alendronate sodium&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;tr&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;IUPAC:&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;td&amp;gt;4-amino-1-hydroxybutylidene) bisphosphonic acid monosodium salt trihydrate&lt;br /&gt;
&amp;lt;/td&amp;gt;&lt;br /&gt;
&amp;lt;/tr&amp;gt;&lt;br /&gt;
&amp;lt;/table&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Fosamax (Alendronate Sodium or Alendronic Acid) is a pharmaceutical drug administered as an antiresorptive therapy agent for osteodegenerative diseases such as [https://en.wikipedia.org/wiki/Osteoporosis Osteoporosis], Paget&#039;s disease, and osteogenesis imperfecta&amp;lt;ref&amp;gt;Gong Li, Altman Russ B, Klein Teri E . &amp;quot;Bisphosphonates pathway&amp;quot; Pharmacogenetics and genomics (2011). from https://www.pharmgkb.org/pathway/PA154423660&amp;lt;/ref&amp;gt;.&lt;br /&gt;
Functioning as a nitrogen-containing, second generation [https://en.wikipedia.org/wiki/Bisphosphonate bisphosphonate], Fosamax binds to [https://en.wikipedia.org/wiki/Hydroxylapatite hydroxyapatite] in bone and promotes apoptosis in [https://en.wikipedia.org/wiki/Osteoclast osteoclasts] (cells specialized in skeletal breakdown), thereby delaying the degradation of bone tissue. While incorporated in bone matrix, alendronate is not pharmacologically active, thus, it must be continuously administered to suppress osteoclasts on newly formed resorption surfaces &amp;lt;ref&amp;gt;Fosamax: Uses, Dosage &amp;amp; Side Effects - Drugs.com. (2016, November 3).Fosamax: Uses, Dosage &amp;amp; Side Effects - Drugs.com. Retrieved November 14, 2016, from https://www.drugs.com/fosamax.html&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
== History &amp;lt;ref&amp;gt;Fosamax (alendronate sodium). Fosamax New FDA Drug Approval | CenterWatch. Merck. Retrieved November 15, 2016, from http://www.centerwatch.com/drug-information/fda-approved-drugs/drug/26/fosamax-alendronate-sodium&amp;lt;/ref&amp;gt;==&lt;br /&gt;
Fosamax has been in use since September 29, 1995 after gaining Food and Drug Administration (FDA) approval. The drug obtained FDA clearance based on data from five clinical trials, lasting two years, involving 1,827 postmenopausal women with osteoporosis in 16 different countries. The trials showed a significant increase in bone mineral density at the spine, hip, and other sites. Overall, the drug reduced the number of women with new spinal fractures by 48%, the total number of new spinal fractures by 63%, and reduced overall height loss by 35%. Today, the drug remains in circulation in caplet and liquid forms and attainable at most pharmaceutical distribution centers with an eligible prescription. &lt;br /&gt;
&lt;br /&gt;
== Side Effects &amp;lt;ref&amp;gt;Common Side Effects of Fosamax (Alendronate Sodium) Drug Center - RxList. (2015, August 26). RxList. Retrieved November 14, 2016, from  http://www.rxlist.com/fosamax-side-effects-drug-center.htm&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
Common side effects of Fosamax include gas, constipation, heartburn, diarrhea, bloating, nausea, vomiting, stomach pain, joint pain or swelling, swelling in your hands or feet, dizziness, headache, eye pain, back pain, or weakness.&lt;br /&gt;
Serious side effects of Fosamax include severe pain (joints, bone, muscle, jaw, back or heartburn), chest pain, difficulty swallowing, bloody stools, eye pain, skin blisters, and swelling of the face, tongue, or throat. &lt;br /&gt;
&lt;br /&gt;
== Structural Highlights &amp;lt;ref&amp;gt;Protein Data Bank in Europe: Bringing Structure to Biology, from http://www.ebi.ac.uk/pdbe/entry/pdb/2F89&amp;lt;/ref&amp;gt; ==&lt;br /&gt;
As a bisphosphonate, Fosamax is a synthetic analog of pyrophosphate, containing two protonated phosphorus oxyanions. Each oxyanion is attached to a hydroxyl group, and at least one hydroxyl group is bound to sodium. When in solution, Fosamax may form an ionic bond(s) with other metal cations such as magnesium. The central carbon is also attached to a hydroxyl group as well as a three-carbon chain leading up to an amino group (Fig. 2).&lt;br /&gt;
&amp;lt;StructureSection load=&#039;2f89&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;Crystal Structure of human FPPS in complex with a bisphosphonate&#039; scene=&#039;&#039;&amp;gt; [[Image:Screen Shot 2016-12-04 at 3.21.51 PM.png|thumb|left|200px|Figure 2. Chemical structure of Fosamax (alendronate sodium).]] &lt;br /&gt;
[[Image:Screen Shot 2016-12-02 at 3.24.13 PM.png|thumb|left|400px|Figure 3. GPP/DMAPP ligand pocket of SPSS-alendronate complex indicated by yellow eclipse.]]&lt;br /&gt;
[[Image:Screen Shot 2016-12-02 at 3.33.04 PM.png|thumb|left|400px|Figure 4. Aspartate-Magnesium cation-phosphonate chelate within FPPS-alendronate complex. Pink sphere indicates Mg2+ ion; red indicates oxygen atom, yellow indicates phosphorous atom, blue (bond-line) indicates nitrogen, blue (ribbon) indicates alpha helix motif.]] [[Image:Screen Shot 2016-12-04 at 8.42.20 PM.png|thumb|left|500px|Figure 5. Comparison between the structure of the carbocation transition states of DMAPP and GPP to the nitrogen-containing bisphosphonate alendronate. Close similarity suggests that Fosamax acts as carbocation transition state analog of isoprenoid diphosphates &amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;.]]&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Mechanism of Action ==&lt;br /&gt;
Functioning as a nitrogen-containing, second generation bisphosphonate, Fosamax binds to hydroxyapatite in bone and promotes apoptosis in osteoclasts (cells specialized in skeletal breakdown), thereby slowing the degradation of bone tissue (Fig. 6)&amp;lt;ref&amp;gt;Drake, Matthew T., Bart L. Clarke, and Sundeep Khosla. &amp;quot;Bisphosphonates: Mechanism of Action and Role in Clinical Practice.&amp;quot; Mayo Clinic Proceedings 83, no. 9 (2008): 1032-045. doi:10.4065/83.9.1032.&amp;lt;/ref&amp;gt;. In order to accomplish this, Fosamax inhibits [http://www.uniprot.org/uniprot/P14324 farnesyl pyrophosphate synthase] (FPPS), one of the enzymes found in the [https://en.wikipedia.org/wiki/Mevalonate_pathway mevalonic acid pathway], thereby reducing the production of isoprenoid compounds that are essential for post-translational modification of small guanosine triphosphate (GTP)-binding proteins (e.g. Rho, Ras, and Rab)&amp;lt;ref&amp;gt;Luckman SP, Hughes DE, Coxon FP, Russell RGG, Rogers MJ. Nitrogen-Containing Biphosphonates Inhibit the Mevalonate Pathway and Prevent Post-Translational Prenylation of GTP-Binding Proteins, Including Ras. Journal of Bone and Mineral Research. 2005;20:1265–74&amp;lt;/ref&amp;gt;. By inhibiting FPPS, Fosamax discourages the successive condensation of isopentenyl pyrophosphate with dimethylallyl pyrophosphate and geranyl pyrophosphate, which interferes with osteoclast function and survival &amp;lt;ref&amp;gt;Alendronic acid. (2005, June 13), from http://www.drugbank.ca/drugs/DB00630#bond-15126&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;Fisher, J. E., Rogers, M. J., Halasy, J. M., Luckman, S. P., Hughes, D. E., Masarachia, P. J., … Reszka, A. A. (1999). Alendronate mechanism of action: geranylgeraniol, an intermediate in the mevalonate pathway, prevents inhibition of osteoclast formation, bone resorption, and kinase activation in vitro. Proceedings of the National Academy of Sciences, 96(1), 133–138. doi:10.1073/pnas.96.1.133, from http://www.pnas.org/content/96/1/133.full.pdf&amp;lt;/ref&amp;gt;. [[Image:Screen Shot 2016-12-04 at 8.23.53 PM.png|thumb|right|400px|Figure 6. Relationship between bisphosphonates and osteoclasts at individual stages of cellular life.&amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;]]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Though the exact chemical mechanism by which alendronate inhibits FPPS remains unclear, nitrogen-containing bisphosphates (N-BPs) bind to the geranyl pyrophosphate/dimethylallyl (GPP/DMAPP) substrate-binding site (Fig. 3) and alter the secondary structure of the enzyme&amp;lt;ref&amp;gt;Kavanagh KL, Guo K, Dunford JE, Wu X, Knapp S, Ebetino FH, et al. The molecular mechanism of nitrogen-containing bisphosphonates as antiosteoporosis drugs. Proceedings of the National Academy of Sciences. 2006;103:7829–34&amp;lt;/ref&amp;gt;. Specifically, alendronate may bind to the FPPS allylic substrate-binding pocket by ligating the Magnesium ion center via phosphonate oxyanion nucleophilic attack&amp;lt;ref&amp;gt;Hosfield DJ, Zhang Y, Dougan DR, Broun A, Tari LW, Swanson RV, et al. Structural Basis for Bisphosphonate-mediated Inhibition of Isoprenoid Biosynthesis. Journal of Biological Chemistry. 2003;279:8526–9&amp;lt;/ref&amp;gt;. Phosphonate groups are stabilized by a cluster of three Mg2+ ions via oxyanion-metal cation charge interactions, as well as three FPPS-conserved aspartate residues located within two alpha helical motifs (~Asp-103, 107, and 243) that form a ligand-bisphosphonate chelate (Fig. 4)&amp;lt;ref&amp;gt;Tarshis L. C., Yan M., Poulter C. D., Sacchettini J. C. Biochemistry. 1994;33:10871–10877. [PubMed]&amp;lt;/ref&amp;gt;. N-BPs may bind to the GPP substrate-binding site because N-BPs resemble the structure of the enzyme’s natural substrates (GPP and DMAPP) and act as carbocation transition state analogs (Fig. 5). Interactions between N-BP and amino acid residues (Thr-201 and Lys-200) suggest that these inhibitors position nitrogen in the carbocation-binding site, then mimic the carbocation intermediate formed via substrate ionization &amp;lt;ref&amp;gt;Martin, M. B., Arnold, W., Heath, H. T., III, Urbina, J. A., and Oldfield, E. (1999) Biochem. Biophys. Res. Commun. 263, 754–758&amp;lt;/ref&amp;gt;. By acting as a transition state analog for isoprenoid biosynthesis, Fosamax effectively increases the activation energy of a regulatory/rate-determining step in the mevalonate pathway, subsequently reducing the concentration of product molecules that aid the continuous biodegradation of skeletal tissue.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== References ==&lt;br /&gt;
&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Contributors and Editors ==&lt;br /&gt;
&lt;br /&gt;
[[User:Alyssa Jewel D. Floro|Floro, Alyssa Jewel D.]] [[User:Justin Myles Kidd|Kidd, Justin M.]] [[User:Osna M. Samady|Samady, Osna M.]]&lt;/div&gt;</summary>
		<author><name>Justin Myles Kidd</name></author>
	</entry>
</feed>