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	<id>https://proteopedia.org/api.php?action=feedcontributions&amp;feedformat=atom&amp;user=Nishika+Patel</id>
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	<updated>2026-09-21T13:35:38Z</updated>
	<subtitle>User contributions</subtitle>
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	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_479&amp;diff=1387090</id>
		<title>Sandbox Reserved 479</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_479&amp;diff=1387090"/>
		<updated>2012-05-02T22:47:57Z</updated>

		<summary type="html">&lt;p&gt;Nishika Patel: /* X-Ray Crystallography and Scattering */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Sandbox_Reserved_Robert_B_Rose_1}}&lt;br /&gt;
&amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
=&#039;&#039;&#039;MYOSIN&#039;&#039;&#039;=&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Myosin&#039;&#039;&#039; is comprised of many different classes of motor proteins within one of three families: actin-based myosin, microtubule-based kinesin, and dynein.&amp;lt;ref name=&amp;quot;Ruppel&amp;quot; /&amp;gt;  There are 35 classes of myosin within the actin-based myosin family of motor proteins, and they are universal in all eukaryotic cells.&amp;lt;ref name=&amp;quot;Varkuti&amp;quot;&amp;gt;PMID: 22343723&amp;lt;/ref&amp;gt;  Myosin II is the more well known form of myosin that is involved in muscle contractions; it acts in complex with [[actin]] to create a powerstroke and cause muscular contraction and relaxation.&amp;lt;ref name=&amp;quot;Ruppel&amp;quot;&amp;gt;PMID: 8862525&amp;lt;/ref&amp;gt;  Myosin is the contractile unit of a sarcomere.  Repeating units of sarcomeres make up a myofibril (muscle fiber), and bundles of fibers make up a skeletal muscle. The figure below (right) is a proteolytic fragment of myosin generated by papain digestion in &#039;&#039;Gallus gallus&#039;&#039; (chicken).&lt;br /&gt;
{{STRUCTURE_2mys| PDB=2mys | SCENE= }}&lt;br /&gt;
&lt;br /&gt;
==Structure==&lt;br /&gt;
&lt;br /&gt;
Myosin is a 520 kDa hexamer, or a &#039;&#039;&#039;hexa-oligomer&#039;&#039;&#039; (6 subunit) structure.  It is comprised of two heavy chains (weighing 220 kDa each) and 4 light chains (weighing 20 kDa each).&amp;lt;ref name=&amp;quot;CHEM43&amp;quot;&amp;gt;[http://www.cs.stedwards.edu/chem/Chemistry/CHEM43/CHEM43/Myosin/STRUCT~1.HTM]&amp;lt;/ref&amp;gt;  The hexamer&#039;s 2 identical heavy chains connected via the coiled coil structure, and each containing a regulatory and essential light chain (total of 4).  The 2-D structure below of myosin II head shows 7 stranded &amp;lt;scene name=&#039;Sandbox_Reserved_479/2mys_beta_sheet/2&#039;&amp;gt;beta sheet&amp;lt;/scene&amp;gt; (Jmol) and the ATP-binding site between the middle and N-terminal of the protein.  The C-terminal contains the light chains (regulatory domain) and acts as the lever arm to enhance the converter domain&#039;s rotational movements.&amp;lt;ref name=&amp;quot;sampath&amp;quot;&amp;gt;[http://www.sampath.koppole.com/research.htm]&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
[[Image:Mds1.png]]&lt;br /&gt;
&lt;br /&gt;
====Secondary Structure====&lt;br /&gt;
&lt;br /&gt;
The N-terminal comprises a globular head in the heavy chains, and the C-terminal ends with an alpha helix.  The globular head region is also known as S1 (actin-binding site and nucleotide-binding site), and also contains mostly &amp;lt;scene name=&#039;Sandbox_Reserved_479/2mys_alpha_helices/1&#039;&amp;gt;alpha helices&amp;lt;/scene&amp;gt; that are critical to maintaining structure.  The C-terminal end contains interspersed hydrophobic regions that give rise to a &amp;quot;coiled-coil structure.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;  &lt;br /&gt;
&lt;br /&gt;
====Active Site====&lt;br /&gt;
&lt;br /&gt;
The actin-binding, &amp;lt;scene name=&#039;Sandbox_Reserved_479/2mys_active_site/1&#039;&amp;gt;catalytic site&amp;lt;/scene&amp;gt; of myosin is known as S1 (subfragment 1).  This is the amino-terminal (N-terminal) globular head portion of the myosin molecule in a region known as the activation loop.&amp;lt;ref name=&amp;quot;Varkuti&amp;quot; /&amp;gt;  The S1 head is divided into three subdomains: the NH2-terminal 25 kDa region, a central 50 kDa region, and the COOH-terminal 20 kDa region.  Further analysis of the S1 active site of myosin suggests that the γ-phosphate (of ATP) binds near the apex of the 50 kDa cleft.  It is believed to be a region critical to function, because of the presence of evolutionarily conserved residues along the central cleft.&amp;lt;ref name=&amp;quot;Ruppel&amp;quot; /&amp;gt;  The actin-binding site and nucleotide-binding site, although dominated by alpha-helices, also contains a straightened section with two cysteine residues.  The can form a disulfide bond in the presence of a nucleotide that prevents ADP from leaving the active site.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
====X-Ray Crystallography and Scattering====&lt;br /&gt;
&lt;br /&gt;
It was not until recently that crystal structures could be used to analyze myosin and it&#039;s role in the actinomysin chemomechanical cycle.  X-ray diffraction studies have been conducted on whole muscles and muscle fibers to learn how structural changes promote and facilitate motor activity.  Modern synchrotron radiation sources allow us to study myosin at the molecular level under near-physiological conditions.  Muscle cells exhibit low scattering power in X-ray images, however, so a clear crystalline structure cannot not form.  A flat detector is needed because reflections are concentrated in the low angle regions.  Snychrotron radiation generates a monochromatic X-ray breams of diameter 0.2-0.3 mm, similar to that of the muscle fiber, and making high resolution images and video of a single muscle cell possible via x-ray scattering patterns.  New technology using snychrotron radiation and 2 dimensional detectors will allow researchers to gain even more insight into the structure of myosin and it&#039;s interaction with actin in unique time and spatial resolution.&amp;lt;ref name=&amp;quot;Koubassova&amp;quot;&amp;gt;PMID: 22339600&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==Interaction with Actin==&lt;br /&gt;
&lt;br /&gt;
[[Image:actinandmyosin.png]]&lt;br /&gt;
&lt;br /&gt;
Myosin disassociates and binds to actin via the hydrolysis of ATP into ADP and Pi.  The force behind a muscle contraction is due to the swinging lever arm (myosin).&amp;lt;ref name=&amp;quot;esrf&amp;quot;&amp;gt;[http://www.esrf.eu/UsersAndScience/Publications/Highlights/2003/MX/MX03]&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
===Mechanism of Action===&lt;br /&gt;
&lt;br /&gt;
Myosin plays a role in the universal mechanism known as the actinomysin chemomechanical cycle.  Actin binds and releases myosin, causing the myosin lever to interact and relax in a cyclic manner.&amp;lt;ref name=&amp;quot;legacy&amp;quot;&amp;gt;[http://legacy.owensboro.kctcs.edu/gcaplan/anat/notes/api%20notes%20j%20%20muscle%20contraction.htm]&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
[[Image:Image336.png]]&lt;br /&gt;
# Actin and myosin cross bridge enter into the tightly bound rigor complex &lt;br /&gt;
# Working stroke occurs where myosin head pulls actin &lt;br /&gt;
# ATP attaches to myosin head causing it to detach from actin&lt;br /&gt;
# ATP is hydrolyzed into ADP and Pi.  Myosin head prepares for attachment to actin filament again&lt;br /&gt;
&lt;br /&gt;
==Medical Implications and Possible Applications==&lt;br /&gt;
&lt;br /&gt;
The discovery of myosin structure served as a crucial component in understanding the causes of many health related problems.  Dysfunctional myosin mutations have been linked to hypertrophy in the heart.  The power strokes are weaker, making muscle contractions less effective.  The heart enlarges to compensate for inadequate cardiac muscle contractions and consequent poor blood circulation.  Also, blood platelet contractile protein aggregation and secretion is impeded by faulty myosin in patients suffering from idiopathic scoliosis.  A defect in the less-well known myosin VIIA causes Usher 1B syndrome; causing a loss of sight and hearing impairments.  Further research will hopefully give more insight into the unknown causes of other diseases and disorders linked to myosin protein mutations.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==References==&lt;br /&gt;
&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Nishika Patel</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_479&amp;diff=1387085</id>
		<title>Sandbox Reserved 479</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_479&amp;diff=1387085"/>
		<updated>2012-05-02T22:44:12Z</updated>

		<summary type="html">&lt;p&gt;Nishika Patel: /* X-Ray Crystallography and Scattering */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Sandbox_Reserved_Robert_B_Rose_1}}&lt;br /&gt;
&amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
=&#039;&#039;&#039;MYOSIN&#039;&#039;&#039;=&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Myosin&#039;&#039;&#039; is comprised of many different classes of motor proteins within one of three families: actin-based myosin, microtubule-based kinesin, and dynein.&amp;lt;ref name=&amp;quot;Ruppel&amp;quot; /&amp;gt;  There are 35 classes of myosin within the actin-based myosin family of motor proteins, and they are universal in all eukaryotic cells.&amp;lt;ref name=&amp;quot;Varkuti&amp;quot;&amp;gt;PMID: 22343723&amp;lt;/ref&amp;gt;  Myosin II is the more well known form of myosin that is involved in muscle contractions; it acts in complex with [[actin]] to create a powerstroke and cause muscular contraction and relaxation.&amp;lt;ref name=&amp;quot;Ruppel&amp;quot;&amp;gt;PMID: 8862525&amp;lt;/ref&amp;gt;  Myosin is the contractile unit of a sarcomere.  Repeating units of sarcomeres make up a myofibril (muscle fiber), and bundles of fibers make up a skeletal muscle. The figure below (right) is a proteolytic fragment of myosin generated by papain digestion in &#039;&#039;Gallus gallus&#039;&#039; (chicken).&lt;br /&gt;
{{STRUCTURE_2mys| PDB=2mys | SCENE= }}&lt;br /&gt;
&lt;br /&gt;
==Structure==&lt;br /&gt;
&lt;br /&gt;
Myosin is a 520 kDa hexamer, or a &#039;&#039;&#039;hexa-oligomer&#039;&#039;&#039; (6 subunit) structure.  It is comprised of two heavy chains (weighing 220 kDa each) and 4 light chains (weighing 20 kDa each).&amp;lt;ref name=&amp;quot;CHEM43&amp;quot;&amp;gt;[http://www.cs.stedwards.edu/chem/Chemistry/CHEM43/CHEM43/Myosin/STRUCT~1.HTM]&amp;lt;/ref&amp;gt;  The hexamer&#039;s 2 identical heavy chains connected via the coiled coil structure, and each containing a regulatory and essential light chain (total of 4).  The 2-D structure below of myosin II head shows 7 stranded &amp;lt;scene name=&#039;Sandbox_Reserved_479/2mys_beta_sheet/2&#039;&amp;gt;beta sheet&amp;lt;/scene&amp;gt; (Jmol) and the ATP-binding site between the middle and N-terminal of the protein.  The C-terminal contains the light chains (regulatory domain) and acts as the lever arm to enhance the converter domain&#039;s rotational movements.&amp;lt;ref name=&amp;quot;sampath&amp;quot;&amp;gt;[http://www.sampath.koppole.com/research.htm]&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
[[Image:Mds1.png]]&lt;br /&gt;
&lt;br /&gt;
====Secondary Structure====&lt;br /&gt;
&lt;br /&gt;
The N-terminal comprises a globular head in the heavy chains, and the C-terminal ends with an alpha helix.  The globular head region is also known as S1 (actin-binding site and nucleotide-binding site), and also contains mostly &amp;lt;scene name=&#039;Sandbox_Reserved_479/2mys_alpha_helices/1&#039;&amp;gt;alpha helices&amp;lt;/scene&amp;gt; that are critical to maintaining structure.  The C-terminal end contains interspersed hydrophobic regions that give rise to a &amp;quot;coiled-coil structure.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;  &lt;br /&gt;
&lt;br /&gt;
====Active Site====&lt;br /&gt;
&lt;br /&gt;
The actin-binding, &amp;lt;scene name=&#039;Sandbox_Reserved_479/2mys_active_site/1&#039;&amp;gt;catalytic site&amp;lt;/scene&amp;gt; of myosin is known as S1 (subfragment 1).  This is the amino-terminal (N-terminal) globular head portion of the myosin molecule in a region known as the activation loop.&amp;lt;ref name=&amp;quot;Varkuti&amp;quot; /&amp;gt;  The S1 head is divided into three subdomains: the NH2-terminal 25 kDa region, a central 50 kDa region, and the COOH-terminal 20 kDa region.  Further analysis of the S1 active site of myosin suggests that the γ-phosphate (of ATP) binds near the apex of the 50 kDa cleft.  It is believed to be a region critical to function, because of the presence of evolutionarily conserved residues along the central cleft.&amp;lt;ref name=&amp;quot;Ruppel&amp;quot; /&amp;gt;  The actin-binding site and nucleotide-binding site, although dominated by alpha-helices, also contains a straightened section with two cysteine residues.  The can form a disulfide bond in the presence of a nucleotide that prevents ADP from leaving the active site.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
====X-Ray Crystallography and Scattering====&lt;br /&gt;
&lt;br /&gt;
It was not until recently that crystal structures could be used to analyze myosin and it&#039;s role in the actinomysin chemomechanical cycle.  X-ray diffraction studies have been conducted on whole muscles and muscle fibers to learn how structural changes promote and facilitate motor activity.  Modern synchrotron radiation sources allow us to study myosin at the molecular level under near-physiological conditions.  Muscle cells exhibit low scattering power in X-ray images, however, so a clear crystalline structure cannot not form.  A flat detector is needed because reflections are concentrated in the low angle regions.  Snychrotron radiation generates a monochromatic X-ray breams of diameter 0.2-0.3 mm, similar to that of the muscle fiber, and making high resolution images and video of a single muscle cell possible via x-ray scattering patterns.&amp;lt;ref name=&amp;quot;Koubassova&amp;quot;&amp;gt;PMID: 22339600&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==Interaction with Actin==&lt;br /&gt;
&lt;br /&gt;
[[Image:actinandmyosin.png]]&lt;br /&gt;
&lt;br /&gt;
Myosin disassociates and binds to actin via the hydrolysis of ATP into ADP and Pi.  The force behind a muscle contraction is due to the swinging lever arm (myosin).&amp;lt;ref name=&amp;quot;esrf&amp;quot;&amp;gt;[http://www.esrf.eu/UsersAndScience/Publications/Highlights/2003/MX/MX03]&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
===Mechanism of Action===&lt;br /&gt;
&lt;br /&gt;
Myosin plays a role in the universal mechanism known as the actinomysin chemomechanical cycle.  Actin binds and releases myosin, causing the myosin lever to interact and relax in a cyclic manner.&amp;lt;ref name=&amp;quot;legacy&amp;quot;&amp;gt;[http://legacy.owensboro.kctcs.edu/gcaplan/anat/notes/api%20notes%20j%20%20muscle%20contraction.htm]&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
[[Image:Image336.png]]&lt;br /&gt;
# Actin and myosin cross bridge enter into the tightly bound rigor complex &lt;br /&gt;
# Working stroke occurs where myosin head pulls actin &lt;br /&gt;
# ATP attaches to myosin head causing it to detach from actin&lt;br /&gt;
# ATP is hydrolyzed into ADP and Pi.  Myosin head prepares for attachment to actin filament again&lt;br /&gt;
&lt;br /&gt;
==Medical Implications and Possible Applications==&lt;br /&gt;
&lt;br /&gt;
The discovery of myosin structure served as a crucial component in understanding the causes of many health related problems.  Dysfunctional myosin mutations have been linked to hypertrophy in the heart.  The power strokes are weaker, making muscle contractions less effective.  The heart enlarges to compensate for inadequate cardiac muscle contractions and consequent poor blood circulation.  Also, blood platelet contractile protein aggregation and secretion is impeded by faulty myosin in patients suffering from idiopathic scoliosis.  A defect in the less-well known myosin VIIA causes Usher 1B syndrome; causing a loss of sight and hearing impairments.  Further research will hopefully give more insight into the unknown causes of other diseases and disorders linked to myosin protein mutations.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==References==&lt;br /&gt;
&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Nishika Patel</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_479&amp;diff=1387067</id>
		<title>Sandbox Reserved 479</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_479&amp;diff=1387067"/>
		<updated>2012-05-02T22:29:09Z</updated>

		<summary type="html">&lt;p&gt;Nishika Patel: /* Structure */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Sandbox_Reserved_Robert_B_Rose_1}}&lt;br /&gt;
&amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
=&#039;&#039;&#039;MYOSIN&#039;&#039;&#039;=&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Myosin&#039;&#039;&#039; is comprised of many different classes of motor proteins within one of three families: actin-based myosin, microtubule-based kinesin, and dynein.&amp;lt;ref name=&amp;quot;Ruppel&amp;quot; /&amp;gt;  There are 35 classes of myosin within the actin-based myosin family of motor proteins, and they are universal in all eukaryotic cells.&amp;lt;ref name=&amp;quot;Varkuti&amp;quot;&amp;gt;PMID: 22343723&amp;lt;/ref&amp;gt;  Myosin II is the more well known form of myosin that is involved in muscle contractions; it acts in complex with [[actin]] to create a powerstroke and cause muscular contraction and relaxation.&amp;lt;ref name=&amp;quot;Ruppel&amp;quot;&amp;gt;PMID: 8862525&amp;lt;/ref&amp;gt;  Myosin is the contractile unit of a sarcomere.  Repeating units of sarcomeres make up a myofibril (muscle fiber), and bundles of fibers make up a skeletal muscle. The figure below (right) is a proteolytic fragment of myosin generated by papain digestion in &#039;&#039;Gallus gallus&#039;&#039; (chicken).&lt;br /&gt;
{{STRUCTURE_2mys| PDB=2mys | SCENE= }}&lt;br /&gt;
&lt;br /&gt;
==Structure==&lt;br /&gt;
&lt;br /&gt;
Myosin is a 520 kDa hexamer, or a &#039;&#039;&#039;hexa-oligomer&#039;&#039;&#039; (6 subunit) structure.  It is comprised of two heavy chains (weighing 220 kDa each) and 4 light chains (weighing 20 kDa each).&amp;lt;ref name=&amp;quot;CHEM43&amp;quot;&amp;gt;[http://www.cs.stedwards.edu/chem/Chemistry/CHEM43/CHEM43/Myosin/STRUCT~1.HTM]&amp;lt;/ref&amp;gt;  The hexamer&#039;s 2 identical heavy chains connected via the coiled coil structure, and each containing a regulatory and essential light chain (total of 4).  The 2-D structure below of myosin II head shows 7 stranded &amp;lt;scene name=&#039;Sandbox_Reserved_479/2mys_beta_sheet/2&#039;&amp;gt;beta sheet&amp;lt;/scene&amp;gt; (Jmol) and the ATP-binding site between the middle and N-terminal of the protein.  The C-terminal contains the light chains (regulatory domain) and acts as the lever arm to enhance the converter domain&#039;s rotational movements.&amp;lt;ref name=&amp;quot;sampath&amp;quot;&amp;gt;[http://www.sampath.koppole.com/research.htm]&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
[[Image:Mds1.png]]&lt;br /&gt;
&lt;br /&gt;
====Secondary Structure====&lt;br /&gt;
&lt;br /&gt;
The N-terminal comprises a globular head in the heavy chains, and the C-terminal ends with an alpha helix.  The globular head region is also known as S1 (actin-binding site and nucleotide-binding site), and also contains mostly &amp;lt;scene name=&#039;Sandbox_Reserved_479/2mys_alpha_helices/1&#039;&amp;gt;alpha helices&amp;lt;/scene&amp;gt; that are critical to maintaining structure.  The C-terminal end contains interspersed hydrophobic regions that give rise to a &amp;quot;coiled-coil structure.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;  &lt;br /&gt;
&lt;br /&gt;
====Active Site====&lt;br /&gt;
&lt;br /&gt;
The actin-binding, &amp;lt;scene name=&#039;Sandbox_Reserved_479/2mys_active_site/1&#039;&amp;gt;catalytic site&amp;lt;/scene&amp;gt; of myosin is known as S1 (subfragment 1).  This is the amino-terminal (N-terminal) globular head portion of the myosin molecule in a region known as the activation loop.&amp;lt;ref name=&amp;quot;Varkuti&amp;quot; /&amp;gt;  The S1 head is divided into three subdomains: the NH2-terminal 25 kDa region, a central 50 kDa region, and the COOH-terminal 20 kDa region.  Further analysis of the S1 active site of myosin suggests that the γ-phosphate (of ATP) binds near the apex of the 50 kDa cleft.  It is believed to be a region critical to function, because of the presence of evolutionarily conserved residues along the central cleft.&amp;lt;ref name=&amp;quot;Ruppel&amp;quot; /&amp;gt;  The actin-binding site and nucleotide-binding site, although dominated by alpha-helices, also contains a straightened section with two cysteine residues.  The can form a disulfide bond in the presence of a nucleotide that prevents ADP from leaving the active site.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
====X-Ray Crystallography and Scattering====&lt;br /&gt;
&lt;br /&gt;
It was not until recently that crystal structures could be used to analyze myosin and it&#039;s role in the actinomysin chemomechanical cycle.  X-ray diffraction studies have been conducted on whole muscles and muscle fibers to learn how structural changes promote and facilitate motor activity.  Movement of myosin was analyzed under near physiological conditions using modern synchrotron radiation sources.  Structural alterations were created through use of unique time and spatial resolution.  Muscle cells exhibit low scattering power in X-ray images, so a clear crystalline structure cannot not form.  A flat detector is needed because reflections are concentrated in the low angle regions.  Snychrotron radiation generates a monochromatic X-ray breams of diameter 0.2-0.3 mm, similar to that of the muscle fiber, and making high resolution images and video of a single muscle cell possible.&amp;lt;ref name=&amp;quot;Koubassova&amp;quot;&amp;gt;PMID: 22339600&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==Interaction with Actin==&lt;br /&gt;
&lt;br /&gt;
[[Image:actinandmyosin.png]]&lt;br /&gt;
&lt;br /&gt;
Myosin disassociates and binds to actin via the hydrolysis of ATP into ADP and Pi.  The force behind a muscle contraction is due to the swinging lever arm (myosin).&amp;lt;ref name=&amp;quot;esrf&amp;quot;&amp;gt;[http://www.esrf.eu/UsersAndScience/Publications/Highlights/2003/MX/MX03]&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
===Mechanism of Action===&lt;br /&gt;
&lt;br /&gt;
Myosin plays a role in the universal mechanism known as the actinomysin chemomechanical cycle.  Actin binds and releases myosin, causing the myosin lever to interact and relax in a cyclic manner.&amp;lt;ref name=&amp;quot;legacy&amp;quot;&amp;gt;[http://legacy.owensboro.kctcs.edu/gcaplan/anat/notes/api%20notes%20j%20%20muscle%20contraction.htm]&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
[[Image:Image336.png]]&lt;br /&gt;
# Actin and myosin cross bridge enter into the tightly bound rigor complex &lt;br /&gt;
# Working stroke occurs where myosin head pulls actin &lt;br /&gt;
# ATP attaches to myosin head causing it to detach from actin&lt;br /&gt;
# ATP is hydrolyzed into ADP and Pi.  Myosin head prepares for attachment to actin filament again&lt;br /&gt;
&lt;br /&gt;
==Medical Implications and Possible Applications==&lt;br /&gt;
&lt;br /&gt;
The discovery of myosin structure served as a crucial component in understanding the causes of many health related problems.  Dysfunctional myosin mutations have been linked to hypertrophy in the heart.  The power strokes are weaker, making muscle contractions less effective.  The heart enlarges to compensate for inadequate cardiac muscle contractions and consequent poor blood circulation.  Also, blood platelet contractile protein aggregation and secretion is impeded by faulty myosin in patients suffering from idiopathic scoliosis.  A defect in the less-well known myosin VIIA causes Usher 1B syndrome; causing a loss of sight and hearing impairments.  Further research will hopefully give more insight into the unknown causes of other diseases and disorders linked to myosin protein mutations.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==References==&lt;br /&gt;
&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Nishika Patel</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_479&amp;diff=1387062</id>
		<title>Sandbox Reserved 479</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_479&amp;diff=1387062"/>
		<updated>2012-05-02T22:27:43Z</updated>

		<summary type="html">&lt;p&gt;Nishika Patel: /* Mechanism of Action */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Sandbox_Reserved_Robert_B_Rose_1}}&lt;br /&gt;
&amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
=&#039;&#039;&#039;MYOSIN&#039;&#039;&#039;=&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Myosin&#039;&#039;&#039; is comprised of many different classes of motor proteins within one of three families: actin-based myosin, microtubule-based kinesin, and dynein.&amp;lt;ref name=&amp;quot;Ruppel&amp;quot; /&amp;gt;  There are 35 classes of myosin within the actin-based myosin family of motor proteins, and they are universal in all eukaryotic cells.&amp;lt;ref name=&amp;quot;Varkuti&amp;quot;&amp;gt;PMID: 22343723&amp;lt;/ref&amp;gt;  Myosin II is the more well known form of myosin that is involved in muscle contractions; it acts in complex with [[actin]] to create a powerstroke and cause muscular contraction and relaxation.&amp;lt;ref name=&amp;quot;Ruppel&amp;quot;&amp;gt;PMID: 8862525&amp;lt;/ref&amp;gt;  Myosin is the contractile unit of a sarcomere.  Repeating units of sarcomeres make up a myofibril (muscle fiber), and bundles of fibers make up a skeletal muscle. The figure below (right) is a proteolytic fragment of myosin generated by papain digestion in &#039;&#039;Gallus gallus&#039;&#039; (chicken).&lt;br /&gt;
{{STRUCTURE_2mys| PDB=2mys | SCENE= }}&lt;br /&gt;
&lt;br /&gt;
==Structure==&lt;br /&gt;
&lt;br /&gt;
Myosin is a 520 kDa hexamer, or a &#039;&#039;&#039;hexa-oligomer&#039;&#039;&#039; (6 subunit) structure.  It is comprised of two heavy chains (weighing 220 kDa each) and 4 light chains (weighing 20 kDa each).&amp;lt;ref name=&amp;quot;CHEM43&amp;quot;&amp;gt;[http://www.cs.stedwards.edu/chem/Chemistry/CHEM43/CHEM43/Myosin/STRUCT~1.HTM]&amp;lt;/ref&amp;gt;  The hexamer&#039;s 2 identical heavy chains connected via the coiled coil structure, and each containing a regulatory and essential light chain (total of 4).  The 2-D structure below of myosin II shows 7 stranded &amp;lt;scene name=&#039;Sandbox_Reserved_479/2mys_beta_sheet/2&#039;&amp;gt;beta sheet&amp;lt;/scene&amp;gt; (Jmol) and the ATP-binding site between the middle and N-terminal of the protein.  The C-terminal contains the light chains (regulatory domain) and acts as the lever arm to enhance the converter domain&#039;s rotational movements.&amp;lt;ref name=&amp;quot;sampath&amp;quot;&amp;gt;[http://www.sampath.koppole.com/research.htm]&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
[[Image:Mds1.png]]&lt;br /&gt;
&lt;br /&gt;
====Secondary Structure====&lt;br /&gt;
&lt;br /&gt;
The N-terminal comprises a globular head in the heavy chains, and the C-terminal ends with an alpha helix.  The globular head region is also known as S1 (actin-binding site and nucleotide-binding site), and also contains mostly &amp;lt;scene name=&#039;Sandbox_Reserved_479/2mys_alpha_helices/1&#039;&amp;gt;alpha helices&amp;lt;/scene&amp;gt; that are critical to maintaining structure.  The C-terminal end contains interspersed hydrophobic regions that give rise to a &amp;quot;coiled-coil structure.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;  &lt;br /&gt;
&lt;br /&gt;
====Active Site====&lt;br /&gt;
&lt;br /&gt;
The actin-binding, &amp;lt;scene name=&#039;Sandbox_Reserved_479/2mys_active_site/1&#039;&amp;gt;catalytic site&amp;lt;/scene&amp;gt; of myosin is known as S1 (subfragment 1).  This is the amino-terminal (N-terminal) globular head portion of the myosin molecule in a region known as the activation loop.&amp;lt;ref name=&amp;quot;Varkuti&amp;quot; /&amp;gt;  The S1 head is divided into three subdomains: the NH2-terminal 25 kDa region, a central 50 kDa region, and the COOH-terminal 20 kDa region.  Further analysis of the S1 active site of myosin suggests that the γ-phosphate (of ATP) binds near the apex of the 50 kDa cleft.  It is believed to be a region critical to function, because of the presence of evolutionarily conserved residues along the central cleft.&amp;lt;ref name=&amp;quot;Ruppel&amp;quot; /&amp;gt;  The actin-binding site and nucleotide-binding site, although dominated by alpha-helices, also contains a straightened section with two cysteine residues.  The can form a disulfide bond in the presence of a nucleotide that prevents ADP from leaving the active site.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
====X-Ray Crystallography and Scattering====&lt;br /&gt;
&lt;br /&gt;
It was not until recently that crystal structures could be used to analyze myosin and it&#039;s role in the actinomysin chemomechanical cycle.  X-ray diffraction studies have been conducted on whole muscles and muscle fibers to learn how structural changes promote and facilitate motor activity.  Movement of myosin was analyzed under near physiological conditions using modern synchrotron radiation sources.  Structural alterations were created through use of unique time and spatial resolution.  Muscle cells exhibit low scattering power in X-ray images, so a clear crystalline structure cannot not form.  A flat detector is needed because reflections are concentrated in the low angle regions.  Snychrotron radiation generates a monochromatic X-ray breams of diameter 0.2-0.3 mm, similar to that of the muscle fiber, and making high resolution images and video of a single muscle cell possible.&amp;lt;ref name=&amp;quot;Koubassova&amp;quot;&amp;gt;PMID: 22339600&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==Interaction with Actin==&lt;br /&gt;
&lt;br /&gt;
[[Image:actinandmyosin.png]]&lt;br /&gt;
&lt;br /&gt;
Myosin disassociates and binds to actin via the hydrolysis of ATP into ADP and Pi.  The force behind a muscle contraction is due to the swinging lever arm (myosin).&amp;lt;ref name=&amp;quot;esrf&amp;quot;&amp;gt;[http://www.esrf.eu/UsersAndScience/Publications/Highlights/2003/MX/MX03]&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
===Mechanism of Action===&lt;br /&gt;
&lt;br /&gt;
Myosin plays a role in the universal mechanism known as the actinomysin chemomechanical cycle.  Actin binds and releases myosin, causing the myosin lever to interact and relax in a cyclic manner.&amp;lt;ref name=&amp;quot;legacy&amp;quot;&amp;gt;[http://legacy.owensboro.kctcs.edu/gcaplan/anat/notes/api%20notes%20j%20%20muscle%20contraction.htm]&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
[[Image:Image336.png]]&lt;br /&gt;
# Actin and myosin cross bridge enter into the tightly bound rigor complex &lt;br /&gt;
# Working stroke occurs where myosin head pulls actin &lt;br /&gt;
# ATP attaches to myosin head causing it to detach from actin&lt;br /&gt;
# ATP is hydrolyzed into ADP and Pi.  Myosin head prepares for attachment to actin filament again&lt;br /&gt;
&lt;br /&gt;
==Medical Implications and Possible Applications==&lt;br /&gt;
&lt;br /&gt;
The discovery of myosin structure served as a crucial component in understanding the causes of many health related problems.  Dysfunctional myosin mutations have been linked to hypertrophy in the heart.  The power strokes are weaker, making muscle contractions less effective.  The heart enlarges to compensate for inadequate cardiac muscle contractions and consequent poor blood circulation.  Also, blood platelet contractile protein aggregation and secretion is impeded by faulty myosin in patients suffering from idiopathic scoliosis.  A defect in the less-well known myosin VIIA causes Usher 1B syndrome; causing a loss of sight and hearing impairments.  Further research will hopefully give more insight into the unknown causes of other diseases and disorders linked to myosin protein mutations.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==References==&lt;br /&gt;
&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Nishika Patel</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_479&amp;diff=1387059</id>
		<title>Sandbox Reserved 479</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_479&amp;diff=1387059"/>
		<updated>2012-05-02T22:27:13Z</updated>

		<summary type="html">&lt;p&gt;Nishika Patel: /* Interaction with Actin */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Sandbox_Reserved_Robert_B_Rose_1}}&lt;br /&gt;
&amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
=&#039;&#039;&#039;MYOSIN&#039;&#039;&#039;=&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Myosin&#039;&#039;&#039; is comprised of many different classes of motor proteins within one of three families: actin-based myosin, microtubule-based kinesin, and dynein.&amp;lt;ref name=&amp;quot;Ruppel&amp;quot; /&amp;gt;  There are 35 classes of myosin within the actin-based myosin family of motor proteins, and they are universal in all eukaryotic cells.&amp;lt;ref name=&amp;quot;Varkuti&amp;quot;&amp;gt;PMID: 22343723&amp;lt;/ref&amp;gt;  Myosin II is the more well known form of myosin that is involved in muscle contractions; it acts in complex with [[actin]] to create a powerstroke and cause muscular contraction and relaxation.&amp;lt;ref name=&amp;quot;Ruppel&amp;quot;&amp;gt;PMID: 8862525&amp;lt;/ref&amp;gt;  Myosin is the contractile unit of a sarcomere.  Repeating units of sarcomeres make up a myofibril (muscle fiber), and bundles of fibers make up a skeletal muscle. The figure below (right) is a proteolytic fragment of myosin generated by papain digestion in &#039;&#039;Gallus gallus&#039;&#039; (chicken).&lt;br /&gt;
{{STRUCTURE_2mys| PDB=2mys | SCENE= }}&lt;br /&gt;
&lt;br /&gt;
==Structure==&lt;br /&gt;
&lt;br /&gt;
Myosin is a 520 kDa hexamer, or a &#039;&#039;&#039;hexa-oligomer&#039;&#039;&#039; (6 subunit) structure.  It is comprised of two heavy chains (weighing 220 kDa each) and 4 light chains (weighing 20 kDa each).&amp;lt;ref name=&amp;quot;CHEM43&amp;quot;&amp;gt;[http://www.cs.stedwards.edu/chem/Chemistry/CHEM43/CHEM43/Myosin/STRUCT~1.HTM]&amp;lt;/ref&amp;gt;  The hexamer&#039;s 2 identical heavy chains connected via the coiled coil structure, and each containing a regulatory and essential light chain (total of 4).  The 2-D structure below of myosin II shows 7 stranded &amp;lt;scene name=&#039;Sandbox_Reserved_479/2mys_beta_sheet/2&#039;&amp;gt;beta sheet&amp;lt;/scene&amp;gt; (Jmol) and the ATP-binding site between the middle and N-terminal of the protein.  The C-terminal contains the light chains (regulatory domain) and acts as the lever arm to enhance the converter domain&#039;s rotational movements.&amp;lt;ref name=&amp;quot;sampath&amp;quot;&amp;gt;[http://www.sampath.koppole.com/research.htm]&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
[[Image:Mds1.png]]&lt;br /&gt;
&lt;br /&gt;
====Secondary Structure====&lt;br /&gt;
&lt;br /&gt;
The N-terminal comprises a globular head in the heavy chains, and the C-terminal ends with an alpha helix.  The globular head region is also known as S1 (actin-binding site and nucleotide-binding site), and also contains mostly &amp;lt;scene name=&#039;Sandbox_Reserved_479/2mys_alpha_helices/1&#039;&amp;gt;alpha helices&amp;lt;/scene&amp;gt; that are critical to maintaining structure.  The C-terminal end contains interspersed hydrophobic regions that give rise to a &amp;quot;coiled-coil structure.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;  &lt;br /&gt;
&lt;br /&gt;
====Active Site====&lt;br /&gt;
&lt;br /&gt;
The actin-binding, &amp;lt;scene name=&#039;Sandbox_Reserved_479/2mys_active_site/1&#039;&amp;gt;catalytic site&amp;lt;/scene&amp;gt; of myosin is known as S1 (subfragment 1).  This is the amino-terminal (N-terminal) globular head portion of the myosin molecule in a region known as the activation loop.&amp;lt;ref name=&amp;quot;Varkuti&amp;quot; /&amp;gt;  The S1 head is divided into three subdomains: the NH2-terminal 25 kDa region, a central 50 kDa region, and the COOH-terminal 20 kDa region.  Further analysis of the S1 active site of myosin suggests that the γ-phosphate (of ATP) binds near the apex of the 50 kDa cleft.  It is believed to be a region critical to function, because of the presence of evolutionarily conserved residues along the central cleft.&amp;lt;ref name=&amp;quot;Ruppel&amp;quot; /&amp;gt;  The actin-binding site and nucleotide-binding site, although dominated by alpha-helices, also contains a straightened section with two cysteine residues.  The can form a disulfide bond in the presence of a nucleotide that prevents ADP from leaving the active site.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
====X-Ray Crystallography and Scattering====&lt;br /&gt;
&lt;br /&gt;
It was not until recently that crystal structures could be used to analyze myosin and it&#039;s role in the actinomysin chemomechanical cycle.  X-ray diffraction studies have been conducted on whole muscles and muscle fibers to learn how structural changes promote and facilitate motor activity.  Movement of myosin was analyzed under near physiological conditions using modern synchrotron radiation sources.  Structural alterations were created through use of unique time and spatial resolution.  Muscle cells exhibit low scattering power in X-ray images, so a clear crystalline structure cannot not form.  A flat detector is needed because reflections are concentrated in the low angle regions.  Snychrotron radiation generates a monochromatic X-ray breams of diameter 0.2-0.3 mm, similar to that of the muscle fiber, and making high resolution images and video of a single muscle cell possible.&amp;lt;ref name=&amp;quot;Koubassova&amp;quot;&amp;gt;PMID: 22339600&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==Interaction with Actin==&lt;br /&gt;
&lt;br /&gt;
[[Image:actinandmyosin.png]]&lt;br /&gt;
&lt;br /&gt;
Myosin disassociates and binds to actin via the hydrolysis of ATP into ADP and Pi.  The force behind a muscle contraction is due to the swinging lever arm (myosin).&amp;lt;ref name=&amp;quot;esrf&amp;quot;&amp;gt;[http://www.esrf.eu/UsersAndScience/Publications/Highlights/2003/MX/MX03]&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==Mechanism of Action==&lt;br /&gt;
&lt;br /&gt;
Myosin plays a role in the universal mechanism known as the actinomysin chemomechanical cycle.  Actin binds and releases myosin, causing the myosin lever to interact and relax in a cyclic manner.&amp;lt;ref name=&amp;quot;legacy&amp;quot;&amp;gt;[http://legacy.owensboro.kctcs.edu/gcaplan/anat/notes/api%20notes%20j%20%20muscle%20contraction.htm]&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
[[Image:Image336.png]]&lt;br /&gt;
# Actin and myosin cross bridge enter into the tightly bound rigor complex &lt;br /&gt;
# Working stroke occurs where myosin head pulls actin &lt;br /&gt;
# ATP attaches to myosin head causing it to detach from actin&lt;br /&gt;
# ATP is hydrolyzed into ADP and Pi.  Myosin head prepares for attachment to actin filament again&lt;br /&gt;
&lt;br /&gt;
==Medical Implications and Possible Applications==&lt;br /&gt;
&lt;br /&gt;
The discovery of myosin structure served as a crucial component in understanding the causes of many health related problems.  Dysfunctional myosin mutations have been linked to hypertrophy in the heart.  The power strokes are weaker, making muscle contractions less effective.  The heart enlarges to compensate for inadequate cardiac muscle contractions and consequent poor blood circulation.  Also, blood platelet contractile protein aggregation and secretion is impeded by faulty myosin in patients suffering from idiopathic scoliosis.  A defect in the less-well known myosin VIIA causes Usher 1B syndrome; causing a loss of sight and hearing impairments.  Further research will hopefully give more insight into the unknown causes of other diseases and disorders linked to myosin protein mutations.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==References==&lt;br /&gt;
&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Nishika Patel</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_479&amp;diff=1387057</id>
		<title>Sandbox Reserved 479</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_479&amp;diff=1387057"/>
		<updated>2012-05-02T22:26:43Z</updated>

		<summary type="html">&lt;p&gt;Nishika Patel: /* Interaction with Actin */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Sandbox_Reserved_Robert_B_Rose_1}}&lt;br /&gt;
&amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
=&#039;&#039;&#039;MYOSIN&#039;&#039;&#039;=&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Myosin&#039;&#039;&#039; is comprised of many different classes of motor proteins within one of three families: actin-based myosin, microtubule-based kinesin, and dynein.&amp;lt;ref name=&amp;quot;Ruppel&amp;quot; /&amp;gt;  There are 35 classes of myosin within the actin-based myosin family of motor proteins, and they are universal in all eukaryotic cells.&amp;lt;ref name=&amp;quot;Varkuti&amp;quot;&amp;gt;PMID: 22343723&amp;lt;/ref&amp;gt;  Myosin II is the more well known form of myosin that is involved in muscle contractions; it acts in complex with [[actin]] to create a powerstroke and cause muscular contraction and relaxation.&amp;lt;ref name=&amp;quot;Ruppel&amp;quot;&amp;gt;PMID: 8862525&amp;lt;/ref&amp;gt;  Myosin is the contractile unit of a sarcomere.  Repeating units of sarcomeres make up a myofibril (muscle fiber), and bundles of fibers make up a skeletal muscle. The figure below (right) is a proteolytic fragment of myosin generated by papain digestion in &#039;&#039;Gallus gallus&#039;&#039; (chicken).&lt;br /&gt;
{{STRUCTURE_2mys| PDB=2mys | SCENE= }}&lt;br /&gt;
&lt;br /&gt;
==Structure==&lt;br /&gt;
&lt;br /&gt;
Myosin is a 520 kDa hexamer, or a &#039;&#039;&#039;hexa-oligomer&#039;&#039;&#039; (6 subunit) structure.  It is comprised of two heavy chains (weighing 220 kDa each) and 4 light chains (weighing 20 kDa each).&amp;lt;ref name=&amp;quot;CHEM43&amp;quot;&amp;gt;[http://www.cs.stedwards.edu/chem/Chemistry/CHEM43/CHEM43/Myosin/STRUCT~1.HTM]&amp;lt;/ref&amp;gt;  The hexamer&#039;s 2 identical heavy chains connected via the coiled coil structure, and each containing a regulatory and essential light chain (total of 4).  The 2-D structure below of myosin II shows 7 stranded &amp;lt;scene name=&#039;Sandbox_Reserved_479/2mys_beta_sheet/2&#039;&amp;gt;beta sheet&amp;lt;/scene&amp;gt; (Jmol) and the ATP-binding site between the middle and N-terminal of the protein.  The C-terminal contains the light chains (regulatory domain) and acts as the lever arm to enhance the converter domain&#039;s rotational movements.&amp;lt;ref name=&amp;quot;sampath&amp;quot;&amp;gt;[http://www.sampath.koppole.com/research.htm]&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
[[Image:Mds1.png]]&lt;br /&gt;
&lt;br /&gt;
====Secondary Structure====&lt;br /&gt;
&lt;br /&gt;
The N-terminal comprises a globular head in the heavy chains, and the C-terminal ends with an alpha helix.  The globular head region is also known as S1 (actin-binding site and nucleotide-binding site), and also contains mostly &amp;lt;scene name=&#039;Sandbox_Reserved_479/2mys_alpha_helices/1&#039;&amp;gt;alpha helices&amp;lt;/scene&amp;gt; that are critical to maintaining structure.  The C-terminal end contains interspersed hydrophobic regions that give rise to a &amp;quot;coiled-coil structure.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;  &lt;br /&gt;
&lt;br /&gt;
====Active Site====&lt;br /&gt;
&lt;br /&gt;
The actin-binding, &amp;lt;scene name=&#039;Sandbox_Reserved_479/2mys_active_site/1&#039;&amp;gt;catalytic site&amp;lt;/scene&amp;gt; of myosin is known as S1 (subfragment 1).  This is the amino-terminal (N-terminal) globular head portion of the myosin molecule in a region known as the activation loop.&amp;lt;ref name=&amp;quot;Varkuti&amp;quot; /&amp;gt;  The S1 head is divided into three subdomains: the NH2-terminal 25 kDa region, a central 50 kDa region, and the COOH-terminal 20 kDa region.  Further analysis of the S1 active site of myosin suggests that the γ-phosphate (of ATP) binds near the apex of the 50 kDa cleft.  It is believed to be a region critical to function, because of the presence of evolutionarily conserved residues along the central cleft.&amp;lt;ref name=&amp;quot;Ruppel&amp;quot; /&amp;gt;  The actin-binding site and nucleotide-binding site, although dominated by alpha-helices, also contains a straightened section with two cysteine residues.  The can form a disulfide bond in the presence of a nucleotide that prevents ADP from leaving the active site.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
====X-Ray Crystallography and Scattering====&lt;br /&gt;
&lt;br /&gt;
It was not until recently that crystal structures could be used to analyze myosin and it&#039;s role in the actinomysin chemomechanical cycle.  X-ray diffraction studies have been conducted on whole muscles and muscle fibers to learn how structural changes promote and facilitate motor activity.  Movement of myosin was analyzed under near physiological conditions using modern synchrotron radiation sources.  Structural alterations were created through use of unique time and spatial resolution.  Muscle cells exhibit low scattering power in X-ray images, so a clear crystalline structure cannot not form.  A flat detector is needed because reflections are concentrated in the low angle regions.  Snychrotron radiation generates a monochromatic X-ray breams of diameter 0.2-0.3 mm, similar to that of the muscle fiber, and making high resolution images and video of a single muscle cell possible.&amp;lt;ref name=&amp;quot;Koubassova&amp;quot;&amp;gt;PMID: 22339600&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==Interaction with Actin==&lt;br /&gt;
&lt;br /&gt;
[[Image:actinandmyosin.png]]&lt;br /&gt;
&lt;br /&gt;
Myosin disassociating and binding to actin via the hydrolysis of ATP into ADP and Pi.  The force behind a muscle contraction is due to the swinging lever arm (myosin).&amp;lt;ref name=&amp;quot;esrf&amp;quot;&amp;gt;[http://www.esrf.eu/UsersAndScience/Publications/Highlights/2003/MX/MX03]&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==Mechanism of Action==&lt;br /&gt;
&lt;br /&gt;
Myosin plays a role in the universal mechanism known as the actinomysin chemomechanical cycle.  Actin binds and releases myosin, causing the myosin lever to interact and relax in a cyclic manner.&amp;lt;ref name=&amp;quot;legacy&amp;quot;&amp;gt;[http://legacy.owensboro.kctcs.edu/gcaplan/anat/notes/api%20notes%20j%20%20muscle%20contraction.htm]&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
[[Image:Image336.png]]&lt;br /&gt;
# Actin and myosin cross bridge enter into the tightly bound rigor complex &lt;br /&gt;
# Working stroke occurs where myosin head pulls actin &lt;br /&gt;
# ATP attaches to myosin head causing it to detach from actin&lt;br /&gt;
# ATP is hydrolyzed into ADP and Pi.  Myosin head prepares for attachment to actin filament again&lt;br /&gt;
&lt;br /&gt;
==Medical Implications and Possible Applications==&lt;br /&gt;
&lt;br /&gt;
The discovery of myosin structure served as a crucial component in understanding the causes of many health related problems.  Dysfunctional myosin mutations have been linked to hypertrophy in the heart.  The power strokes are weaker, making muscle contractions less effective.  The heart enlarges to compensate for inadequate cardiac muscle contractions and consequent poor blood circulation.  Also, blood platelet contractile protein aggregation and secretion is impeded by faulty myosin in patients suffering from idiopathic scoliosis.  A defect in the less-well known myosin VIIA causes Usher 1B syndrome; causing a loss of sight and hearing impairments.  Further research will hopefully give more insight into the unknown causes of other diseases and disorders linked to myosin protein mutations.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==References==&lt;br /&gt;
&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Nishika Patel</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_479&amp;diff=1387054</id>
		<title>Sandbox Reserved 479</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_479&amp;diff=1387054"/>
		<updated>2012-05-02T22:26:23Z</updated>

		<summary type="html">&lt;p&gt;Nishika Patel: /* Interaction with Actin&amp;lt;ref name=&amp;quot;esrf&amp;quot;&amp;gt;[http://www.esrf.eu/UsersAndScience/Publications/Highlights/2003/MX/MX03]&amp;lt;/ref&amp;gt; */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Sandbox_Reserved_Robert_B_Rose_1}}&lt;br /&gt;
&amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
=&#039;&#039;&#039;MYOSIN&#039;&#039;&#039;=&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Myosin&#039;&#039;&#039; is comprised of many different classes of motor proteins within one of three families: actin-based myosin, microtubule-based kinesin, and dynein.&amp;lt;ref name=&amp;quot;Ruppel&amp;quot; /&amp;gt;  There are 35 classes of myosin within the actin-based myosin family of motor proteins, and they are universal in all eukaryotic cells.&amp;lt;ref name=&amp;quot;Varkuti&amp;quot;&amp;gt;PMID: 22343723&amp;lt;/ref&amp;gt;  Myosin II is the more well known form of myosin that is involved in muscle contractions; it acts in complex with [[actin]] to create a powerstroke and cause muscular contraction and relaxation.&amp;lt;ref name=&amp;quot;Ruppel&amp;quot;&amp;gt;PMID: 8862525&amp;lt;/ref&amp;gt;  Myosin is the contractile unit of a sarcomere.  Repeating units of sarcomeres make up a myofibril (muscle fiber), and bundles of fibers make up a skeletal muscle. The figure below (right) is a proteolytic fragment of myosin generated by papain digestion in &#039;&#039;Gallus gallus&#039;&#039; (chicken).&lt;br /&gt;
{{STRUCTURE_2mys| PDB=2mys | SCENE= }}&lt;br /&gt;
&lt;br /&gt;
==Structure==&lt;br /&gt;
&lt;br /&gt;
Myosin is a 520 kDa hexamer, or a &#039;&#039;&#039;hexa-oligomer&#039;&#039;&#039; (6 subunit) structure.  It is comprised of two heavy chains (weighing 220 kDa each) and 4 light chains (weighing 20 kDa each).&amp;lt;ref name=&amp;quot;CHEM43&amp;quot;&amp;gt;[http://www.cs.stedwards.edu/chem/Chemistry/CHEM43/CHEM43/Myosin/STRUCT~1.HTM]&amp;lt;/ref&amp;gt;  The hexamer&#039;s 2 identical heavy chains connected via the coiled coil structure, and each containing a regulatory and essential light chain (total of 4).  The 2-D structure below of myosin II shows 7 stranded &amp;lt;scene name=&#039;Sandbox_Reserved_479/2mys_beta_sheet/2&#039;&amp;gt;beta sheet&amp;lt;/scene&amp;gt; (Jmol) and the ATP-binding site between the middle and N-terminal of the protein.  The C-terminal contains the light chains (regulatory domain) and acts as the lever arm to enhance the converter domain&#039;s rotational movements.&amp;lt;ref name=&amp;quot;sampath&amp;quot;&amp;gt;[http://www.sampath.koppole.com/research.htm]&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
[[Image:Mds1.png]]&lt;br /&gt;
&lt;br /&gt;
====Secondary Structure====&lt;br /&gt;
&lt;br /&gt;
The N-terminal comprises a globular head in the heavy chains, and the C-terminal ends with an alpha helix.  The globular head region is also known as S1 (actin-binding site and nucleotide-binding site), and also contains mostly &amp;lt;scene name=&#039;Sandbox_Reserved_479/2mys_alpha_helices/1&#039;&amp;gt;alpha helices&amp;lt;/scene&amp;gt; that are critical to maintaining structure.  The C-terminal end contains interspersed hydrophobic regions that give rise to a &amp;quot;coiled-coil structure.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;  &lt;br /&gt;
&lt;br /&gt;
====Active Site====&lt;br /&gt;
&lt;br /&gt;
The actin-binding, &amp;lt;scene name=&#039;Sandbox_Reserved_479/2mys_active_site/1&#039;&amp;gt;catalytic site&amp;lt;/scene&amp;gt; of myosin is known as S1 (subfragment 1).  This is the amino-terminal (N-terminal) globular head portion of the myosin molecule in a region known as the activation loop.&amp;lt;ref name=&amp;quot;Varkuti&amp;quot; /&amp;gt;  The S1 head is divided into three subdomains: the NH2-terminal 25 kDa region, a central 50 kDa region, and the COOH-terminal 20 kDa region.  Further analysis of the S1 active site of myosin suggests that the γ-phosphate (of ATP) binds near the apex of the 50 kDa cleft.  It is believed to be a region critical to function, because of the presence of evolutionarily conserved residues along the central cleft.&amp;lt;ref name=&amp;quot;Ruppel&amp;quot; /&amp;gt;  The actin-binding site and nucleotide-binding site, although dominated by alpha-helices, also contains a straightened section with two cysteine residues.  The can form a disulfide bond in the presence of a nucleotide that prevents ADP from leaving the active site.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
====X-Ray Crystallography and Scattering====&lt;br /&gt;
&lt;br /&gt;
It was not until recently that crystal structures could be used to analyze myosin and it&#039;s role in the actinomysin chemomechanical cycle.  X-ray diffraction studies have been conducted on whole muscles and muscle fibers to learn how structural changes promote and facilitate motor activity.  Movement of myosin was analyzed under near physiological conditions using modern synchrotron radiation sources.  Structural alterations were created through use of unique time and spatial resolution.  Muscle cells exhibit low scattering power in X-ray images, so a clear crystalline structure cannot not form.  A flat detector is needed because reflections are concentrated in the low angle regions.  Snychrotron radiation generates a monochromatic X-ray breams of diameter 0.2-0.3 mm, similar to that of the muscle fiber, and making high resolution images and video of a single muscle cell possible.&amp;lt;ref name=&amp;quot;Koubassova&amp;quot;&amp;gt;PMID: 22339600&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==Interaction with Actin==&lt;br /&gt;
&lt;br /&gt;
[[Image:actinandmyosin.png]]&lt;br /&gt;
Myosin disassociating and binding to actin via the hydrolysis of ATP into ADP and Pi.  The force behind a muscle contraction is due to the swinging lever arm (myosin).&amp;lt;ref name=&amp;quot;esrf&amp;quot;&amp;gt;[http://www.esrf.eu/UsersAndScience/Publications/Highlights/2003/MX/MX03]&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==Mechanism of Action==&lt;br /&gt;
&lt;br /&gt;
Myosin plays a role in the universal mechanism known as the actinomysin chemomechanical cycle.  Actin binds and releases myosin, causing the myosin lever to interact and relax in a cyclic manner.&amp;lt;ref name=&amp;quot;legacy&amp;quot;&amp;gt;[http://legacy.owensboro.kctcs.edu/gcaplan/anat/notes/api%20notes%20j%20%20muscle%20contraction.htm]&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
[[Image:Image336.png]]&lt;br /&gt;
# Actin and myosin cross bridge enter into the tightly bound rigor complex &lt;br /&gt;
# Working stroke occurs where myosin head pulls actin &lt;br /&gt;
# ATP attaches to myosin head causing it to detach from actin&lt;br /&gt;
# ATP is hydrolyzed into ADP and Pi.  Myosin head prepares for attachment to actin filament again&lt;br /&gt;
&lt;br /&gt;
==Medical Implications and Possible Applications==&lt;br /&gt;
&lt;br /&gt;
The discovery of myosin structure served as a crucial component in understanding the causes of many health related problems.  Dysfunctional myosin mutations have been linked to hypertrophy in the heart.  The power strokes are weaker, making muscle contractions less effective.  The heart enlarges to compensate for inadequate cardiac muscle contractions and consequent poor blood circulation.  Also, blood platelet contractile protein aggregation and secretion is impeded by faulty myosin in patients suffering from idiopathic scoliosis.  A defect in the less-well known myosin VIIA causes Usher 1B syndrome; causing a loss of sight and hearing impairments.  Further research will hopefully give more insight into the unknown causes of other diseases and disorders linked to myosin protein mutations.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==References==&lt;br /&gt;
&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Nishika Patel</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_479&amp;diff=1387044</id>
		<title>Sandbox Reserved 479</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_479&amp;diff=1387044"/>
		<updated>2012-05-02T22:20:06Z</updated>

		<summary type="html">&lt;p&gt;Nishika Patel: /* X-Ray Crystallography and Scattering */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Sandbox_Reserved_Robert_B_Rose_1}}&lt;br /&gt;
&amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
=&#039;&#039;&#039;MYOSIN&#039;&#039;&#039;=&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Myosin&#039;&#039;&#039; is comprised of many different classes of motor proteins within one of three families: actin-based myosin, microtubule-based kinesin, and dynein.&amp;lt;ref name=&amp;quot;Ruppel&amp;quot; /&amp;gt;  There are 35 classes of myosin within the actin-based myosin family of motor proteins, and they are universal in all eukaryotic cells.&amp;lt;ref name=&amp;quot;Varkuti&amp;quot;&amp;gt;PMID: 22343723&amp;lt;/ref&amp;gt;  Myosin II is the more well known form of myosin that is involved in muscle contractions; it acts in complex with [[actin]] to create a powerstroke and cause muscular contraction and relaxation.&amp;lt;ref name=&amp;quot;Ruppel&amp;quot;&amp;gt;PMID: 8862525&amp;lt;/ref&amp;gt;  Myosin is the contractile unit of a sarcomere.  Repeating units of sarcomeres make up a myofibril (muscle fiber), and bundles of fibers make up a skeletal muscle. The figure below (right) is a proteolytic fragment of myosin generated by papain digestion in &#039;&#039;Gallus gallus&#039;&#039; (chicken).&lt;br /&gt;
{{STRUCTURE_2mys| PDB=2mys | SCENE= }}&lt;br /&gt;
&lt;br /&gt;
==Structure==&lt;br /&gt;
&lt;br /&gt;
Myosin is a 520 kDa hexamer, or a &#039;&#039;&#039;hexa-oligomer&#039;&#039;&#039; (6 subunit) structure.  It is comprised of two heavy chains (weighing 220 kDa each) and 4 light chains (weighing 20 kDa each).&amp;lt;ref name=&amp;quot;CHEM43&amp;quot;&amp;gt;[http://www.cs.stedwards.edu/chem/Chemistry/CHEM43/CHEM43/Myosin/STRUCT~1.HTM]&amp;lt;/ref&amp;gt;  The hexamer&#039;s 2 identical heavy chains connected via the coiled coil structure, and each containing a regulatory and essential light chain (total of 4).  The 2-D structure below of myosin II shows 7 stranded &amp;lt;scene name=&#039;Sandbox_Reserved_479/2mys_beta_sheet/2&#039;&amp;gt;beta sheet&amp;lt;/scene&amp;gt; (Jmol) and the ATP-binding site between the middle and N-terminal of the protein.  The C-terminal contains the light chains (regulatory domain) and acts as the lever arm to enhance the converter domain&#039;s rotational movements.&amp;lt;ref name=&amp;quot;sampath&amp;quot;&amp;gt;[http://www.sampath.koppole.com/research.htm]&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
[[Image:Mds1.png]]&lt;br /&gt;
&lt;br /&gt;
====Secondary Structure====&lt;br /&gt;
&lt;br /&gt;
The N-terminal comprises a globular head in the heavy chains, and the C-terminal ends with an alpha helix.  The globular head region is also known as S1 (actin-binding site and nucleotide-binding site), and also contains mostly &amp;lt;scene name=&#039;Sandbox_Reserved_479/2mys_alpha_helices/1&#039;&amp;gt;alpha helices&amp;lt;/scene&amp;gt; that are critical to maintaining structure.  The C-terminal end contains interspersed hydrophobic regions that give rise to a &amp;quot;coiled-coil structure.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;  &lt;br /&gt;
&lt;br /&gt;
====Active Site====&lt;br /&gt;
&lt;br /&gt;
The actin-binding, &amp;lt;scene name=&#039;Sandbox_Reserved_479/2mys_active_site/1&#039;&amp;gt;catalytic site&amp;lt;/scene&amp;gt; of myosin is known as S1 (subfragment 1).  This is the amino-terminal (N-terminal) globular head portion of the myosin molecule in a region known as the activation loop.&amp;lt;ref name=&amp;quot;Varkuti&amp;quot; /&amp;gt;  The S1 head is divided into three subdomains: the NH2-terminal 25 kDa region, a central 50 kDa region, and the COOH-terminal 20 kDa region.  Further analysis of the S1 active site of myosin suggests that the γ-phosphate (of ATP) binds near the apex of the 50 kDa cleft.  It is believed to be a region critical to function, because of the presence of evolutionarily conserved residues along the central cleft.&amp;lt;ref name=&amp;quot;Ruppel&amp;quot; /&amp;gt;  The actin-binding site and nucleotide-binding site, although dominated by alpha-helices, also contains a straightened section with two cysteine residues.  The can form a disulfide bond in the presence of a nucleotide that prevents ADP from leaving the active site.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
====X-Ray Crystallography and Scattering====&lt;br /&gt;
&lt;br /&gt;
It was not until recently that crystal structures could be used to analyze myosin and it&#039;s role in the actinomysin chemomechanical cycle.  X-ray diffraction studies have been conducted on whole muscles and muscle fibers to learn how structural changes promote and facilitate motor activity.  Movement of myosin was analyzed under near physiological conditions using modern synchrotron radiation sources.  Structural alterations were created through use of unique time and spatial resolution.  Muscle cells exhibit low scattering power in X-ray images, so a clear crystalline structure cannot not form.  A flat detector is needed because reflections are concentrated in the low angle regions.  Snychrotron radiation generates a monochromatic X-ray breams of diameter 0.2-0.3 mm, similar to that of the muscle fiber, and making high resolution images and video of a single muscle cell possible.&amp;lt;ref name=&amp;quot;Koubassova&amp;quot;&amp;gt;PMID: 22339600&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==Interaction with Actin&amp;lt;ref name=&amp;quot;esrf&amp;quot;&amp;gt;[http://www.esrf.eu/UsersAndScience/Publications/Highlights/2003/MX/MX03]&amp;lt;/ref&amp;gt;==&lt;br /&gt;
&lt;br /&gt;
[[Image:actinandmyosin.png]]&lt;br /&gt;
&lt;br /&gt;
==Mechanism of Action==&lt;br /&gt;
&lt;br /&gt;
Myosin plays a role in the universal mechanism known as the actinomysin chemomechanical cycle.  Actin binds and releases myosin, causing the myosin lever to interact and relax in a cyclic manner.&amp;lt;ref name=&amp;quot;legacy&amp;quot;&amp;gt;[http://legacy.owensboro.kctcs.edu/gcaplan/anat/notes/api%20notes%20j%20%20muscle%20contraction.htm]&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
[[Image:Image336.png]]&lt;br /&gt;
# Actin and myosin cross bridge enter into the tightly bound rigor complex &lt;br /&gt;
# Working stroke occurs where myosin head pulls actin &lt;br /&gt;
# ATP attaches to myosin head causing it to detach from actin&lt;br /&gt;
# ATP is hydrolyzed into ADP and Pi.  Myosin head prepares for attachment to actin filament again&lt;br /&gt;
&lt;br /&gt;
==Medical Implications and Possible Applications==&lt;br /&gt;
&lt;br /&gt;
The discovery of myosin structure served as a crucial component in understanding the causes of many health related problems.  Dysfunctional myosin mutations have been linked to hypertrophy in the heart.  The power strokes are weaker, making muscle contractions less effective.  The heart enlarges to compensate for inadequate cardiac muscle contractions and consequent poor blood circulation.  Also, blood platelet contractile protein aggregation and secretion is impeded by faulty myosin in patients suffering from idiopathic scoliosis.  A defect in the less-well known myosin VIIA causes Usher 1B syndrome; causing a loss of sight and hearing impairments.  Further research will hopefully give more insight into the unknown causes of other diseases and disorders linked to myosin protein mutations.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==References==&lt;br /&gt;
&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Nishika Patel</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_479&amp;diff=1387043</id>
		<title>Sandbox Reserved 479</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_479&amp;diff=1387043"/>
		<updated>2012-05-02T22:19:33Z</updated>

		<summary type="html">&lt;p&gt;Nishika Patel: /* Interaction with Actin */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Sandbox_Reserved_Robert_B_Rose_1}}&lt;br /&gt;
&amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
=&#039;&#039;&#039;MYOSIN&#039;&#039;&#039;=&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Myosin&#039;&#039;&#039; is comprised of many different classes of motor proteins within one of three families: actin-based myosin, microtubule-based kinesin, and dynein.&amp;lt;ref name=&amp;quot;Ruppel&amp;quot; /&amp;gt;  There are 35 classes of myosin within the actin-based myosin family of motor proteins, and they are universal in all eukaryotic cells.&amp;lt;ref name=&amp;quot;Varkuti&amp;quot;&amp;gt;PMID: 22343723&amp;lt;/ref&amp;gt;  Myosin II is the more well known form of myosin that is involved in muscle contractions; it acts in complex with [[actin]] to create a powerstroke and cause muscular contraction and relaxation.&amp;lt;ref name=&amp;quot;Ruppel&amp;quot;&amp;gt;PMID: 8862525&amp;lt;/ref&amp;gt;  Myosin is the contractile unit of a sarcomere.  Repeating units of sarcomeres make up a myofibril (muscle fiber), and bundles of fibers make up a skeletal muscle. The figure below (right) is a proteolytic fragment of myosin generated by papain digestion in &#039;&#039;Gallus gallus&#039;&#039; (chicken).&lt;br /&gt;
{{STRUCTURE_2mys| PDB=2mys | SCENE= }}&lt;br /&gt;
&lt;br /&gt;
==Structure==&lt;br /&gt;
&lt;br /&gt;
Myosin is a 520 kDa hexamer, or a &#039;&#039;&#039;hexa-oligomer&#039;&#039;&#039; (6 subunit) structure.  It is comprised of two heavy chains (weighing 220 kDa each) and 4 light chains (weighing 20 kDa each).&amp;lt;ref name=&amp;quot;CHEM43&amp;quot;&amp;gt;[http://www.cs.stedwards.edu/chem/Chemistry/CHEM43/CHEM43/Myosin/STRUCT~1.HTM]&amp;lt;/ref&amp;gt;  The hexamer&#039;s 2 identical heavy chains connected via the coiled coil structure, and each containing a regulatory and essential light chain (total of 4).  The 2-D structure below of myosin II shows 7 stranded &amp;lt;scene name=&#039;Sandbox_Reserved_479/2mys_beta_sheet/2&#039;&amp;gt;beta sheet&amp;lt;/scene&amp;gt; (Jmol) and the ATP-binding site between the middle and N-terminal of the protein.  The C-terminal contains the light chains (regulatory domain) and acts as the lever arm to enhance the converter domain&#039;s rotational movements.&amp;lt;ref name=&amp;quot;sampath&amp;quot;&amp;gt;[http://www.sampath.koppole.com/research.htm]&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
[[Image:Mds1.png]]&lt;br /&gt;
&lt;br /&gt;
====Secondary Structure====&lt;br /&gt;
&lt;br /&gt;
The N-terminal comprises a globular head in the heavy chains, and the C-terminal ends with an alpha helix.  The globular head region is also known as S1 (actin-binding site and nucleotide-binding site), and also contains mostly &amp;lt;scene name=&#039;Sandbox_Reserved_479/2mys_alpha_helices/1&#039;&amp;gt;alpha helices&amp;lt;/scene&amp;gt; that are critical to maintaining structure.  The C-terminal end contains interspersed hydrophobic regions that give rise to a &amp;quot;coiled-coil structure.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;  &lt;br /&gt;
&lt;br /&gt;
====Active Site====&lt;br /&gt;
&lt;br /&gt;
The actin-binding, &amp;lt;scene name=&#039;Sandbox_Reserved_479/2mys_active_site/1&#039;&amp;gt;catalytic site&amp;lt;/scene&amp;gt; of myosin is known as S1 (subfragment 1).  This is the amino-terminal (N-terminal) globular head portion of the myosin molecule in a region known as the activation loop.&amp;lt;ref name=&amp;quot;Varkuti&amp;quot; /&amp;gt;  The S1 head is divided into three subdomains: the NH2-terminal 25 kDa region, a central 50 kDa region, and the COOH-terminal 20 kDa region.  Further analysis of the S1 active site of myosin suggests that the γ-phosphate (of ATP) binds near the apex of the 50 kDa cleft.  It is believed to be a region critical to function, because of the presence of evolutionarily conserved residues along the central cleft.&amp;lt;ref name=&amp;quot;Ruppel&amp;quot; /&amp;gt;  The actin-binding site and nucleotide-binding site, although dominated by alpha-helices, also contains a straightened section with two cysteine residues.  The can form a disulfide bond in the presence of a nucleotide that prevents ADP from leaving the active site.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
====X-Ray Crystallography and Scattering====&lt;br /&gt;
&lt;br /&gt;
It was not until recently that crystal structures could be used to analyze myosin and it&#039;s role in the actinomysin chemomechanical cycle.  X-ray diffraction studies have been conducted on whole muscles and muscle fibers to learn how structural changes promote and facilitate motor activity.  Movement of myosin was analyzed under near physiological conditions using modern synchrotron radiation sources.  Structural alterations were created through use of unique time and spatial resolution.  Muscle cells exhibit low scattering power in X-ray images, so a clear crystalline structure cannot not form.  A flat detector is needed because reflections are concentrated in the low angle regions.  Snychrotron radiation generates a monochromatic X-ray breams of diameter 0.2-0.3 mm, similar to that of the muscle fiber, and making high resolution images and video of a single muscle cell possible.&amp;lt;ref name=&amp;quot;Koubassova&amp;quot;&amp;gt;PMID: 22339600&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==Interaction with Actin==&amp;lt;ref name=&amp;quot;esrf&amp;quot;&amp;gt;[http://www.esrf.eu/UsersAndScience/Publications/Highlights/2003/MX/MX03]&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
[[Image:actinandmyosin.png]]&lt;br /&gt;
&lt;br /&gt;
==Mechanism of Action==&lt;br /&gt;
&lt;br /&gt;
Myosin plays a role in the universal mechanism known as the actinomysin chemomechanical cycle.  Actin binds and releases myosin, causing the myosin lever to interact and relax in a cyclic manner.&amp;lt;ref name=&amp;quot;legacy&amp;quot;&amp;gt;[http://legacy.owensboro.kctcs.edu/gcaplan/anat/notes/api%20notes%20j%20%20muscle%20contraction.htm]&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
[[Image:Image336.png]]&lt;br /&gt;
# Actin and myosin cross bridge enter into the tightly bound rigor complex &lt;br /&gt;
# Working stroke occurs where myosin head pulls actin &lt;br /&gt;
# ATP attaches to myosin head causing it to detach from actin&lt;br /&gt;
# ATP is hydrolyzed into ADP and Pi.  Myosin head prepares for attachment to actin filament again&lt;br /&gt;
&lt;br /&gt;
==Medical Implications and Possible Applications==&lt;br /&gt;
&lt;br /&gt;
The discovery of myosin structure served as a crucial component in understanding the causes of many health related problems.  Dysfunctional myosin mutations have been linked to hypertrophy in the heart.  The power strokes are weaker, making muscle contractions less effective.  The heart enlarges to compensate for inadequate cardiac muscle contractions and consequent poor blood circulation.  Also, blood platelet contractile protein aggregation and secretion is impeded by faulty myosin in patients suffering from idiopathic scoliosis.  A defect in the less-well known myosin VIIA causes Usher 1B syndrome; causing a loss of sight and hearing impairments.  Further research will hopefully give more insight into the unknown causes of other diseases and disorders linked to myosin protein mutations.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==References==&lt;br /&gt;
&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Nishika Patel</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_479&amp;diff=1387041</id>
		<title>Sandbox Reserved 479</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_479&amp;diff=1387041"/>
		<updated>2012-05-02T22:17:01Z</updated>

		<summary type="html">&lt;p&gt;Nishika Patel: /* Interaction with Actin */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Sandbox_Reserved_Robert_B_Rose_1}}&lt;br /&gt;
&amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
=&#039;&#039;&#039;MYOSIN&#039;&#039;&#039;=&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Myosin&#039;&#039;&#039; is comprised of many different classes of motor proteins within one of three families: actin-based myosin, microtubule-based kinesin, and dynein.&amp;lt;ref name=&amp;quot;Ruppel&amp;quot; /&amp;gt;  There are 35 classes of myosin within the actin-based myosin family of motor proteins, and they are universal in all eukaryotic cells.&amp;lt;ref name=&amp;quot;Varkuti&amp;quot;&amp;gt;PMID: 22343723&amp;lt;/ref&amp;gt;  Myosin II is the more well known form of myosin that is involved in muscle contractions; it acts in complex with [[actin]] to create a powerstroke and cause muscular contraction and relaxation.&amp;lt;ref name=&amp;quot;Ruppel&amp;quot;&amp;gt;PMID: 8862525&amp;lt;/ref&amp;gt;  Myosin is the contractile unit of a sarcomere.  Repeating units of sarcomeres make up a myofibril (muscle fiber), and bundles of fibers make up a skeletal muscle. The figure below (right) is a proteolytic fragment of myosin generated by papain digestion in &#039;&#039;Gallus gallus&#039;&#039; (chicken).&lt;br /&gt;
{{STRUCTURE_2mys| PDB=2mys | SCENE= }}&lt;br /&gt;
&lt;br /&gt;
==Structure==&lt;br /&gt;
&lt;br /&gt;
Myosin is a 520 kDa hexamer, or a &#039;&#039;&#039;hexa-oligomer&#039;&#039;&#039; (6 subunit) structure.  It is comprised of two heavy chains (weighing 220 kDa each) and 4 light chains (weighing 20 kDa each).&amp;lt;ref name=&amp;quot;CHEM43&amp;quot;&amp;gt;[http://www.cs.stedwards.edu/chem/Chemistry/CHEM43/CHEM43/Myosin/STRUCT~1.HTM]&amp;lt;/ref&amp;gt;  The hexamer&#039;s 2 identical heavy chains connected via the coiled coil structure, and each containing a regulatory and essential light chain (total of 4).  The 2-D structure below of myosin II shows 7 stranded &amp;lt;scene name=&#039;Sandbox_Reserved_479/2mys_beta_sheet/2&#039;&amp;gt;beta sheet&amp;lt;/scene&amp;gt; (Jmol) and the ATP-binding site between the middle and N-terminal of the protein.  The C-terminal contains the light chains (regulatory domain) and acts as the lever arm to enhance the converter domain&#039;s rotational movements.&amp;lt;ref name=&amp;quot;sampath&amp;quot;&amp;gt;[http://www.sampath.koppole.com/research.htm]&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
[[Image:Mds1.png]]&lt;br /&gt;
&lt;br /&gt;
====Secondary Structure====&lt;br /&gt;
&lt;br /&gt;
The N-terminal comprises a globular head in the heavy chains, and the C-terminal ends with an alpha helix.  The globular head region is also known as S1 (actin-binding site and nucleotide-binding site), and also contains mostly &amp;lt;scene name=&#039;Sandbox_Reserved_479/2mys_alpha_helices/1&#039;&amp;gt;alpha helices&amp;lt;/scene&amp;gt; that are critical to maintaining structure.  The C-terminal end contains interspersed hydrophobic regions that give rise to a &amp;quot;coiled-coil structure.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;  &lt;br /&gt;
&lt;br /&gt;
====Active Site====&lt;br /&gt;
&lt;br /&gt;
The actin-binding, &amp;lt;scene name=&#039;Sandbox_Reserved_479/2mys_active_site/1&#039;&amp;gt;catalytic site&amp;lt;/scene&amp;gt; of myosin is known as S1 (subfragment 1).  This is the amino-terminal (N-terminal) globular head portion of the myosin molecule in a region known as the activation loop.&amp;lt;ref name=&amp;quot;Varkuti&amp;quot; /&amp;gt;  The S1 head is divided into three subdomains: the NH2-terminal 25 kDa region, a central 50 kDa region, and the COOH-terminal 20 kDa region.  Further analysis of the S1 active site of myosin suggests that the γ-phosphate (of ATP) binds near the apex of the 50 kDa cleft.  It is believed to be a region critical to function, because of the presence of evolutionarily conserved residues along the central cleft.&amp;lt;ref name=&amp;quot;Ruppel&amp;quot; /&amp;gt;  The actin-binding site and nucleotide-binding site, although dominated by alpha-helices, also contains a straightened section with two cysteine residues.  The can form a disulfide bond in the presence of a nucleotide that prevents ADP from leaving the active site.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
====X-Ray Crystallography and Scattering====&lt;br /&gt;
&lt;br /&gt;
It was not until recently that crystal structures could be used to analyze myosin and it&#039;s role in the actinomysin chemomechanical cycle.  X-ray diffraction studies have been conducted on whole muscles and muscle fibers to learn how structural changes promote and facilitate motor activity.  Movement of myosin was analyzed under near physiological conditions using modern synchrotron radiation sources.  Structural alterations were created through use of unique time and spatial resolution.  Muscle cells exhibit low scattering power in X-ray images, so a clear crystalline structure cannot not form.  A flat detector is needed because reflections are concentrated in the low angle regions.  Snychrotron radiation generates a monochromatic X-ray breams of diameter 0.2-0.3 mm, similar to that of the muscle fiber, and making high resolution images and video of a single muscle cell possible.&amp;lt;ref name=&amp;quot;Koubassova&amp;quot;&amp;gt;PMID: 22339600&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==Interaction with Actin==&lt;br /&gt;
&lt;br /&gt;
[[Image:actinandmyosin.png]]&amp;lt;ref name=&amp;quot;esrf&amp;quot;&amp;gt;[http://www.esrf.eu/UsersAndScience/Publications/Highlights/2003/MX/MX03]&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==Mechanism of Action==&lt;br /&gt;
&lt;br /&gt;
Myosin plays a role in the universal mechanism known as the actinomysin chemomechanical cycle.  Actin binds and releases myosin, causing the myosin lever to interact and relax in a cyclic manner.&amp;lt;ref name=&amp;quot;legacy&amp;quot;&amp;gt;[http://legacy.owensboro.kctcs.edu/gcaplan/anat/notes/api%20notes%20j%20%20muscle%20contraction.htm]&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
[[Image:Image336.png]]&lt;br /&gt;
# Actin and myosin cross bridge enter into the tightly bound rigor complex &lt;br /&gt;
# Working stroke occurs where myosin head pulls actin &lt;br /&gt;
# ATP attaches to myosin head causing it to detach from actin&lt;br /&gt;
# ATP is hydrolyzed into ADP and Pi.  Myosin head prepares for attachment to actin filament again&lt;br /&gt;
&lt;br /&gt;
==Medical Implications and Possible Applications==&lt;br /&gt;
&lt;br /&gt;
The discovery of myosin structure served as a crucial component in understanding the causes of many health related problems.  Dysfunctional myosin mutations have been linked to hypertrophy in the heart.  The power strokes are weaker, making muscle contractions less effective.  The heart enlarges to compensate for inadequate cardiac muscle contractions and consequent poor blood circulation.  Also, blood platelet contractile protein aggregation and secretion is impeded by faulty myosin in patients suffering from idiopathic scoliosis.  A defect in the less-well known myosin VIIA causes Usher 1B syndrome; causing a loss of sight and hearing impairments.  Further research will hopefully give more insight into the unknown causes of other diseases and disorders linked to myosin protein mutations.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==References==&lt;br /&gt;
&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Nishika Patel</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=File:Actinandmyosin.png&amp;diff=1387039</id>
		<title>File:Actinandmyosin.png</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=File:Actinandmyosin.png&amp;diff=1387039"/>
		<updated>2012-05-02T22:16:18Z</updated>

		<summary type="html">&lt;p&gt;Nishika Patel: credit given on page&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;credit given on page&lt;/div&gt;</summary>
		<author><name>Nishika Patel</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_479&amp;diff=1387034</id>
		<title>Sandbox Reserved 479</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_479&amp;diff=1387034"/>
		<updated>2012-05-02T22:13:32Z</updated>

		<summary type="html">&lt;p&gt;Nishika Patel: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Sandbox_Reserved_Robert_B_Rose_1}}&lt;br /&gt;
&amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
=&#039;&#039;&#039;MYOSIN&#039;&#039;&#039;=&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Myosin&#039;&#039;&#039; is comprised of many different classes of motor proteins within one of three families: actin-based myosin, microtubule-based kinesin, and dynein.&amp;lt;ref name=&amp;quot;Ruppel&amp;quot; /&amp;gt;  There are 35 classes of myosin within the actin-based myosin family of motor proteins, and they are universal in all eukaryotic cells.&amp;lt;ref name=&amp;quot;Varkuti&amp;quot;&amp;gt;PMID: 22343723&amp;lt;/ref&amp;gt;  Myosin II is the more well known form of myosin that is involved in muscle contractions; it acts in complex with [[actin]] to create a powerstroke and cause muscular contraction and relaxation.&amp;lt;ref name=&amp;quot;Ruppel&amp;quot;&amp;gt;PMID: 8862525&amp;lt;/ref&amp;gt;  Myosin is the contractile unit of a sarcomere.  Repeating units of sarcomeres make up a myofibril (muscle fiber), and bundles of fibers make up a skeletal muscle. The figure below (right) is a proteolytic fragment of myosin generated by papain digestion in &#039;&#039;Gallus gallus&#039;&#039; (chicken).&lt;br /&gt;
{{STRUCTURE_2mys| PDB=2mys | SCENE= }}&lt;br /&gt;
&lt;br /&gt;
==Structure==&lt;br /&gt;
&lt;br /&gt;
Myosin is a 520 kDa hexamer, or a &#039;&#039;&#039;hexa-oligomer&#039;&#039;&#039; (6 subunit) structure.  It is comprised of two heavy chains (weighing 220 kDa each) and 4 light chains (weighing 20 kDa each).&amp;lt;ref name=&amp;quot;CHEM43&amp;quot;&amp;gt;[http://www.cs.stedwards.edu/chem/Chemistry/CHEM43/CHEM43/Myosin/STRUCT~1.HTM]&amp;lt;/ref&amp;gt;  The hexamer&#039;s 2 identical heavy chains connected via the coiled coil structure, and each containing a regulatory and essential light chain (total of 4).  The 2-D structure below of myosin II shows 7 stranded &amp;lt;scene name=&#039;Sandbox_Reserved_479/2mys_beta_sheet/2&#039;&amp;gt;beta sheet&amp;lt;/scene&amp;gt; (Jmol) and the ATP-binding site between the middle and N-terminal of the protein.  The C-terminal contains the light chains (regulatory domain) and acts as the lever arm to enhance the converter domain&#039;s rotational movements.&amp;lt;ref name=&amp;quot;sampath&amp;quot;&amp;gt;[http://www.sampath.koppole.com/research.htm]&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
[[Image:Mds1.png]]&lt;br /&gt;
&lt;br /&gt;
====Secondary Structure====&lt;br /&gt;
&lt;br /&gt;
The N-terminal comprises a globular head in the heavy chains, and the C-terminal ends with an alpha helix.  The globular head region is also known as S1 (actin-binding site and nucleotide-binding site), and also contains mostly &amp;lt;scene name=&#039;Sandbox_Reserved_479/2mys_alpha_helices/1&#039;&amp;gt;alpha helices&amp;lt;/scene&amp;gt; that are critical to maintaining structure.  The C-terminal end contains interspersed hydrophobic regions that give rise to a &amp;quot;coiled-coil structure.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;  &lt;br /&gt;
&lt;br /&gt;
====Active Site====&lt;br /&gt;
&lt;br /&gt;
The actin-binding, &amp;lt;scene name=&#039;Sandbox_Reserved_479/2mys_active_site/1&#039;&amp;gt;catalytic site&amp;lt;/scene&amp;gt; of myosin is known as S1 (subfragment 1).  This is the amino-terminal (N-terminal) globular head portion of the myosin molecule in a region known as the activation loop.&amp;lt;ref name=&amp;quot;Varkuti&amp;quot; /&amp;gt;  The S1 head is divided into three subdomains: the NH2-terminal 25 kDa region, a central 50 kDa region, and the COOH-terminal 20 kDa region.  Further analysis of the S1 active site of myosin suggests that the γ-phosphate (of ATP) binds near the apex of the 50 kDa cleft.  It is believed to be a region critical to function, because of the presence of evolutionarily conserved residues along the central cleft.&amp;lt;ref name=&amp;quot;Ruppel&amp;quot; /&amp;gt;  The actin-binding site and nucleotide-binding site, although dominated by alpha-helices, also contains a straightened section with two cysteine residues.  The can form a disulfide bond in the presence of a nucleotide that prevents ADP from leaving the active site.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
====X-Ray Crystallography and Scattering====&lt;br /&gt;
&lt;br /&gt;
It was not until recently that crystal structures could be used to analyze myosin and it&#039;s role in the actinomysin chemomechanical cycle.  X-ray diffraction studies have been conducted on whole muscles and muscle fibers to learn how structural changes promote and facilitate motor activity.  Movement of myosin was analyzed under near physiological conditions using modern synchrotron radiation sources.  Structural alterations were created through use of unique time and spatial resolution.  Muscle cells exhibit low scattering power in X-ray images, so a clear crystalline structure cannot not form.  A flat detector is needed because reflections are concentrated in the low angle regions.  Snychrotron radiation generates a monochromatic X-ray breams of diameter 0.2-0.3 mm, similar to that of the muscle fiber, and making high resolution images and video of a single muscle cell possible.&amp;lt;ref name=&amp;quot;Koubassova&amp;quot;&amp;gt;PMID: 22339600&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==Interaction with Actin==&lt;br /&gt;
&lt;br /&gt;
[[Image:fig023.png]]&amp;lt;ref name=&amp;quot;esrf&amp;quot;&amp;gt;[http://www.esrf.eu/UsersAndScience/Publications/Highlights/2003/MX/MX03]&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==Mechanism of Action==&lt;br /&gt;
&lt;br /&gt;
Myosin plays a role in the universal mechanism known as the actinomysin chemomechanical cycle.  Actin binds and releases myosin, causing the myosin lever to interact and relax in a cyclic manner.&amp;lt;ref name=&amp;quot;legacy&amp;quot;&amp;gt;[http://legacy.owensboro.kctcs.edu/gcaplan/anat/notes/api%20notes%20j%20%20muscle%20contraction.htm]&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
[[Image:Image336.png]]&lt;br /&gt;
# Actin and myosin cross bridge enter into the tightly bound rigor complex &lt;br /&gt;
# Working stroke occurs where myosin head pulls actin &lt;br /&gt;
# ATP attaches to myosin head causing it to detach from actin&lt;br /&gt;
# ATP is hydrolyzed into ADP and Pi.  Myosin head prepares for attachment to actin filament again&lt;br /&gt;
&lt;br /&gt;
==Medical Implications and Possible Applications==&lt;br /&gt;
&lt;br /&gt;
The discovery of myosin structure served as a crucial component in understanding the causes of many health related problems.  Dysfunctional myosin mutations have been linked to hypertrophy in the heart.  The power strokes are weaker, making muscle contractions less effective.  The heart enlarges to compensate for inadequate cardiac muscle contractions and consequent poor blood circulation.  Also, blood platelet contractile protein aggregation and secretion is impeded by faulty myosin in patients suffering from idiopathic scoliosis.  A defect in the less-well known myosin VIIA causes Usher 1B syndrome; causing a loss of sight and hearing impairments.  Further research will hopefully give more insight into the unknown causes of other diseases and disorders linked to myosin protein mutations.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==References==&lt;br /&gt;
&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Nishika Patel</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_479&amp;diff=1387019</id>
		<title>Sandbox Reserved 479</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_479&amp;diff=1387019"/>
		<updated>2012-05-02T22:01:38Z</updated>

		<summary type="html">&lt;p&gt;Nishika Patel: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Sandbox_Reserved_Robert_B_Rose_1}}&lt;br /&gt;
&amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
=&#039;&#039;&#039;MYOSIN&#039;&#039;&#039;=&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Myosin&#039;&#039;&#039; is comprised of many different classes of motor proteins within one of three families: actin-based myosin, microtubule-based kinesin, and dynein.&amp;lt;ref name=&amp;quot;Ruppel&amp;quot; /&amp;gt;  There are 35 classes of myosin within the actin-based myosin family of motor proteins, and they are universal in all eukaryotic cells.&amp;lt;ref name=&amp;quot;Varkuti&amp;quot;&amp;gt;PMID: 22343723&amp;lt;/ref&amp;gt;  Myosin II is the more well known form of myosin that is involved in muscle contractions; it acts in complex with [[actin]] to create a powerstroke and cause muscular contraction and relaxation.&amp;lt;ref name=&amp;quot;Ruppel&amp;quot;&amp;gt;PMID: 8862525&amp;lt;/ref&amp;gt;  Myosin is the contractile unit of a sarcomere.  Repeating units of sarcomeres make up a myofibril (muscle fiber), and bundles of fibers make up a skeletal muscle. The figure below (right) is a proteolytic fragment of myosin generated by papain digestion in &#039;&#039;Gallus gallus&#039;&#039; (chicken).&lt;br /&gt;
{{STRUCTURE_2mys| PDB=2mys | SCENE= }}&lt;br /&gt;
&lt;br /&gt;
==Structure==&lt;br /&gt;
&lt;br /&gt;
Myosin is a 520 kDa hexamer, or a &#039;&#039;&#039;hexa-oligomer&#039;&#039;&#039; (6 subunit) structure.  It is comprised of two heavy chains (weighing 220 kDa each) and 4 light chains (weighing 20 kDa each).&amp;lt;ref name=&amp;quot;CHEM43&amp;quot;&amp;gt;[http://www.cs.stedwards.edu/chem/Chemistry/CHEM43/CHEM43/Myosin/STRUCT~1.HTM]&amp;lt;/ref&amp;gt;  The hexamer&#039;s 2 identical heavy chains connected via the coiled coil structure, and each containing a regulatory and essential light chain (total of 4).  The 2-D structure below of myosin II shows 7 stranded &amp;lt;scene name=&#039;Sandbox_Reserved_479/2mys_beta_sheet/2&#039;&amp;gt;beta sheet&amp;lt;/scene&amp;gt; (Jmol) and the ATP-binding site between the middle and N-terminal of the protein.  The C-terminal contains the light chains (regulatory domain) and acts as the lever arm to enhance the converter domain&#039;s rotational movements.&amp;lt;ref name=&amp;quot;sampath&amp;quot;&amp;gt;[http://www.sampath.koppole.com/research.htm]&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
[[Image:Mds1.png]]&lt;br /&gt;
&lt;br /&gt;
====Secondary Structure====&lt;br /&gt;
&lt;br /&gt;
The N-terminal comprises a globular head in the heavy chains, and the C-terminal ends with an alpha helix.  The globular head region is also known as S1 (actin-binding site and nucleotide-binding site), and also contains mostly &amp;lt;scene name=&#039;Sandbox_Reserved_479/2mys_alpha_helices/1&#039;&amp;gt;alpha helices&amp;lt;/scene&amp;gt; that are critical to maintaining structure.  The C-terminal end contains interspersed hydrophobic regions that give rise to a &amp;quot;coiled-coil structure.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;  &lt;br /&gt;
&lt;br /&gt;
====Active Site====&lt;br /&gt;
&lt;br /&gt;
The actin-binding, &amp;lt;scene name=&#039;Sandbox_Reserved_479/2mys_active_site/1&#039;&amp;gt;catalytic site&amp;lt;/scene&amp;gt; of myosin is known as S1 (subfragment 1).  This is the amino-terminal (N-terminal) globular head portion of the myosin molecule in a region known as the activation loop.&amp;lt;ref name=&amp;quot;Varkuti&amp;quot; /&amp;gt;  The S1 head is divided into three subdomains: the NH2-terminal 25 kDa region, a central 50 kDa region, and the COOH-terminal 20 kDa region.  Further analysis of the S1 active site of myosin suggests that the γ-phosphate (of ATP) binds near the apex of the 50 kDa cleft.  It is believed to be a region critical to function, because of the presence of evolutionarily conserved residues along the central cleft.&amp;lt;ref name=&amp;quot;Ruppel&amp;quot; /&amp;gt;  The actin-binding site and nucleotide-binding site, although dominated by alpha-helices, also contains a straightened section with two cysteine residues.  The can form a disulfide bond in the presence of a nucleotide that prevents ADP from leaving the active site.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
====X-Ray Crystallography and Scattering====&lt;br /&gt;
&lt;br /&gt;
It was not until recently that crystal structures could be used to analyze myosin and it&#039;s role in the actinomysin chemomechanical cycle.  X-ray diffraction studies have been conducted on whole muscles and muscle fibers to learn how structural changes promote and facilitate motor activity.  Movement of myosin was analyzed under near physiological conditions using modern synchrotron radiation sources.  Structural alterations were created through use of unique time and spatial resolution.  Muscle cells exhibit low scattering power in X-ray images, so a clear crystalline structure cannot not form.  A flat detector is needed because reflections are concentrated in the low angle regions.  Snychrotron radiation generates a monochromatic X-ray breams of diameter 0.2-0.3 mm, similar to that of the muscle fiber, and making high resolution images and video of a single muscle cell possible.&amp;lt;ref name=&amp;quot;Koubassova&amp;quot;&amp;gt;PMID: 22339600&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==Interaction with Actin==&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
==Mechanism of Action==&lt;br /&gt;
&lt;br /&gt;
Myosin plays a role in the universal mechanism known as the actinomysin chemomechanical cycle.  Actin binds and releases myosin, causing the myosin lever to interact and relax in a cyclic manner.&amp;lt;ref name=&amp;quot;legacy&amp;quot;&amp;gt;[http://legacy.owensboro.kctcs.edu/gcaplan/anat/notes/api%20notes%20j%20%20muscle%20contraction.htm]&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
[[Image:Image336.png]]&lt;br /&gt;
# Actin and myosin cross bridge enter into the tightly bound rigor complex &lt;br /&gt;
# Working stroke occurs where myosin head pulls actin &lt;br /&gt;
# ATP attaches to myosin head causing it to detach from actin&lt;br /&gt;
# ATP is hydrolyzed into ADP and Pi.  Myosin head prepares for attachment to actin filament again&lt;br /&gt;
&lt;br /&gt;
==Medical Implications and Possible Applications==&lt;br /&gt;
&lt;br /&gt;
The discovery of myosin structure served as a crucial component in understanding the causes of many health related problems.  Dysfunctional myosin mutations have been linked to hypertrophy in the heart.  The power strokes are weaker, making muscle contractions less effective.  The heart enlarges to compensate for inadequate cardiac muscle contractions and consequent poor blood circulation.  Also, blood platelet contractile protein aggregation and secretion is impeded by faulty myosin in patients suffering from idiopathic scoliosis.  A defect in the less-well known myosin VIIA causes Usher 1B syndrome; causing a loss of sight and hearing impairments.  Further research will hopefully give more insight into the unknown causes of other diseases and disorders linked to myosin protein mutations.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==References==&lt;br /&gt;
&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Nishika Patel</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_479&amp;diff=1386264</id>
		<title>Sandbox Reserved 479</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_479&amp;diff=1386264"/>
		<updated>2012-05-02T19:21:18Z</updated>

		<summary type="html">&lt;p&gt;Nishika Patel: /* Structure */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Sandbox_Reserved_Robert_B_Rose_1}}&lt;br /&gt;
&amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
=&#039;&#039;&#039;MYOSIN&#039;&#039;&#039;=&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Myosin&#039;&#039;&#039; is comprised of many different classes of motor proteins within one of three families: actin-based myosin, microtubule-based kinesin, and dynein.&amp;lt;ref name=&amp;quot;Ruppel&amp;quot; /&amp;gt;  There are 35 classes of myosin within the actin-based myosin family of motor proteins, and they are universal in all eukaryotic cells.&amp;lt;ref name=&amp;quot;Varkuti&amp;quot;&amp;gt;PMID: 22343723&amp;lt;/ref&amp;gt;  Myosin II is the more well known form of myosin that is involved in muscle contractions; it acts in complex with [[actin]] to create a powerstroke and cause muscular contraction and relaxation.&amp;lt;ref name=&amp;quot;Ruppel&amp;quot;&amp;gt;PMID: 8862525&amp;lt;/ref&amp;gt;  Myosin is the contractile unit of a sarcomere.  Repeating units of sarcomeres make up a myofibril (muscle fiber), and bundles of fibers make up a skeletal muscle. The figure below (right) is a proteolytic fragment of myosin generated by papain digestion in &#039;&#039;Gallus gallus&#039;&#039; (chicken).&lt;br /&gt;
{{STRUCTURE_2mys| PDB=2mys | SCENE= }}&lt;br /&gt;
&lt;br /&gt;
==Structure==&lt;br /&gt;
&lt;br /&gt;
Myosin is a 520 kDa hexamer, or a &#039;&#039;&#039;hexa-oligomer&#039;&#039;&#039; (6 subunit) structure.  It is comprised of two heavy chains (weighing 220 kDa each) and 4 light chains (weighing 20 kDa each).&amp;lt;ref name=&amp;quot;CHEM43&amp;quot;&amp;gt;[http://www.cs.stedwards.edu/chem/Chemistry/CHEM43/CHEM43/Myosin/STRUCT~1.HTM]&amp;lt;/ref&amp;gt;  The hexamer&#039;s 2 identical heavy chains connected via the coiled coil structure, and each containing a regulatory and essential light chain (total of 4).  The 2-D structure below of myosin II shows 7 stranded &amp;lt;scene name=&#039;Sandbox_Reserved_479/2mys_beta_sheet/2&#039;&amp;gt;beta sheet&amp;lt;/scene&amp;gt; (Jmol) and the ATP-binding site between the middle and N-terminal of the protein.  The C-terminal contains the light chains (regulatory domain) and acts as the lever arm to enhance the converter domain&#039;s rotational movements.&amp;lt;ref name=&amp;quot;sampath&amp;quot;&amp;gt;[http://www.sampath.koppole.com/research.htm]&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
[[Image:Mds1.png]]&lt;br /&gt;
&lt;br /&gt;
====Secondary Structure====&lt;br /&gt;
&lt;br /&gt;
The N-terminal comprises a globular head in the heavy chains, and the C-terminal ends with an alpha helix.  The globular head region is also known as S1 (actin-binding site and nucleotide-binding site), and also contains mostly &amp;lt;scene name=&#039;Sandbox_Reserved_479/2mys_alpha_helices/1&#039;&amp;gt;alpha helices&amp;lt;/scene&amp;gt; that are critical to maintaining structure.  The C-terminal end contains interspersed hydrophobic regions that give rise to a &amp;quot;coiled-coil structure.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;  &lt;br /&gt;
&lt;br /&gt;
====Active Site====&lt;br /&gt;
&lt;br /&gt;
The actin-binding, &amp;lt;scene name=&#039;Sandbox_Reserved_479/2mys_active_site/1&#039;&amp;gt;catalytic site&amp;lt;/scene&amp;gt; of myosin is known as S1 (subfragment 1).  This is the amino-terminal (N-terminal) globular head portion of the myosin molecule in a region known as the activation loop.&amp;lt;ref name=&amp;quot;Varkuti&amp;quot; /&amp;gt;  The S1 head is divided into three subdomains: the NH2-terminal 25 kDa region, a central 50 kDa region, and the COOH-terminal 20 kDa region.  Further analysis of the S1 active site of myosin suggests that the γ-phosphate (of ATP) binds near the apex of the 50 kDa cleft.  It is believed to be a region critical to function, because of the presence of evolutionarily conserved residues along the central cleft.&amp;lt;ref name=&amp;quot;Ruppel&amp;quot; /&amp;gt;  The actin-binding site and nucleotide-binding site, although dominated by alpha-helices, also contains a straightened section with two cysteine residues.  The can form a disulfide bond in the presence of a nucleotide that prevents ADP from leaving the active site.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
====X-Ray Crystallography and Scattering====&lt;br /&gt;
&lt;br /&gt;
It was not until recently that crystal structures could be used to analyze myosin and it&#039;s role in the actinomysin chemomechanical cycle.  X-ray diffraction studies have been conducted on whole muscles and muscle fibers to learn how structural changes promote and facilitate motor activity.  Movement of myosin was analyzed under near physiological conditions using modern synchrotron radiation sources.  Structural alterations were created through use of unique time and spatial resolution.  Muscle cells exhibit low scattering power in X-ray images, so a clear crystalline structure cannot not form.  A flat detector is needed because reflections are concentrated in the low angle regions.  Snychrotron radiation generates a monochromatic X-ray breams of diameter 0.2-0.3 mm, similar to that of the muscle fiber, and making high resolution images and video of a single muscle cell possible.&amp;lt;ref name=&amp;quot;Koubassova&amp;quot;&amp;gt;PMID: 22339600&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==Mechanism of Action==&lt;br /&gt;
&lt;br /&gt;
Myosin plays a role in the universal mechanism known as the actinomysin chemomechanical cycle.  Actin binds and releases myosin, causing the myosin lever to interact and relax in a cyclic manner.&amp;lt;ref name=&amp;quot;legacy&amp;quot;&amp;gt;[http://legacy.owensboro.kctcs.edu/gcaplan/anat/notes/api%20notes%20j%20%20muscle%20contraction.htm]&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
[[Image:Image336.png]]&lt;br /&gt;
# Actin and myosin cross bridge enter into the tightly bound rigor complex &lt;br /&gt;
# Working stroke occurs where myosin head pulls actin &lt;br /&gt;
# ATP attaches to myosin head causing it to detach from actin&lt;br /&gt;
# ATP is hydrolyzed into ADP and Pi.  Myosin head prepares for attachment to actin filament again&lt;br /&gt;
&lt;br /&gt;
==Medical Implications and Possible Applications==&lt;br /&gt;
&lt;br /&gt;
The discovery of myosin structure served as a crucial component in understanding the causes of many health related problems.  Dysfunctional myosin mutations have been linked to hypertrophy in the heart.  The power strokes are weaker, making muscle contractions less effective.  The heart enlarges to compensate for inadequate cardiac muscle contractions and consequent poor blood circulation.  Also, blood platelet contractile protein aggregation and secretion is impeded by faulty myosin in patients suffering from idiopathic scoliosis.  A defect in the less-well known myosin VIIA causes Usher 1B syndrome; causing a loss of sight and hearing impairments.  Further research will hopefully give more insight into the unknown causes of other diseases and disorders linked to myosin protein mutations.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==References==&lt;br /&gt;
&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Nishika Patel</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_479&amp;diff=1386222</id>
		<title>Sandbox Reserved 479</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_479&amp;diff=1386222"/>
		<updated>2012-05-02T19:20:28Z</updated>

		<summary type="html">&lt;p&gt;Nishika Patel: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Sandbox_Reserved_Robert_B_Rose_1}}&lt;br /&gt;
&amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
=&#039;&#039;&#039;MYOSIN&#039;&#039;&#039;=&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Myosin&#039;&#039;&#039; is comprised of many different classes of motor proteins within one of three families: actin-based myosin, microtubule-based kinesin, and dynein.&amp;lt;ref name=&amp;quot;Ruppel&amp;quot; /&amp;gt;  There are 35 classes of myosin within the actin-based myosin family of motor proteins, and they are universal in all eukaryotic cells.&amp;lt;ref name=&amp;quot;Varkuti&amp;quot;&amp;gt;PMID: 22343723&amp;lt;/ref&amp;gt;  Myosin II is the more well known form of myosin that is involved in muscle contractions; it acts in complex with [[actin]] to create a powerstroke and cause muscular contraction and relaxation.&amp;lt;ref name=&amp;quot;Ruppel&amp;quot;&amp;gt;PMID: 8862525&amp;lt;/ref&amp;gt;  Myosin is the contractile unit of a sarcomere.  Repeating units of sarcomeres make up a myofibril (muscle fiber), and bundles of fibers make up a skeletal muscle. The figure below (right) is a proteolytic fragment of myosin generated by papain digestion in &#039;&#039;Gallus gallus&#039;&#039; (chicken).&lt;br /&gt;
{{STRUCTURE_2mys| PDB=2mys | SCENE= }}&lt;br /&gt;
&lt;br /&gt;
==Structure==&lt;br /&gt;
&lt;br /&gt;
Myosin is a 520 kDa hexamer, or a &#039;&#039;&#039;hexa-oligomer&#039;&#039;&#039; (6 subunit) structure.  It is comprised of two heavy chains (weighing 220 kDa each) and 4 light chains (weighing 20 kDa each).&amp;lt;ref name=&amp;quot;CHEM43&amp;quot;&amp;gt;[http://www.cs.stedwards.edu/chem/Chemistry/CHEM43/CHEM43/Myosin/STRUCT~1.HTM]&amp;lt;/ref&amp;gt;  The hexamer&#039;s 2 identical heavy chains connected via the coiled coil structure, and each containing a regulatory and essential light chain (total of 4).&amp;lt;ref name=&amp;quot;sampath&amp;quot; /&amp;gt;  The 2-D structure below of myosin II shows 7 stranded &amp;lt;scene name=&#039;Sandbox_Reserved_479/2mys_beta_sheet/2&#039;&amp;gt;beta sheet&amp;lt;/scene&amp;gt; (Jmol) and the ATP-binding site between the middle and N-terminal of the protein.  The C-terminal contains the light chains (regulatory domain) and acts as the lever arm to enhance the converter domain&#039;s rotational movements.&amp;lt;ref name=&amp;quot;sampath&amp;quot;&amp;gt;[http://www.sampath.koppole.com/research.htm]&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
[[Image:Mds1.png]]&lt;br /&gt;
&lt;br /&gt;
====Secondary Structure====&lt;br /&gt;
&lt;br /&gt;
The N-terminal comprises a globular head in the heavy chains, and the C-terminal ends with an alpha helix.  The globular head region is also known as S1 (actin-binding site and nucleotide-binding site), and also contains mostly &amp;lt;scene name=&#039;Sandbox_Reserved_479/2mys_alpha_helices/1&#039;&amp;gt;alpha helices&amp;lt;/scene&amp;gt; that are critical to maintaining structure.  The C-terminal end contains interspersed hydrophobic regions that give rise to a &amp;quot;coiled-coil structure.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;  &lt;br /&gt;
&lt;br /&gt;
====Active Site====&lt;br /&gt;
&lt;br /&gt;
The actin-binding, &amp;lt;scene name=&#039;Sandbox_Reserved_479/2mys_active_site/1&#039;&amp;gt;catalytic site&amp;lt;/scene&amp;gt; of myosin is known as S1 (subfragment 1).  This is the amino-terminal (N-terminal) globular head portion of the myosin molecule in a region known as the activation loop.&amp;lt;ref name=&amp;quot;Varkuti&amp;quot; /&amp;gt;  The S1 head is divided into three subdomains: the NH2-terminal 25 kDa region, a central 50 kDa region, and the COOH-terminal 20 kDa region.  Further analysis of the S1 active site of myosin suggests that the γ-phosphate (of ATP) binds near the apex of the 50 kDa cleft.  It is believed to be a region critical to function, because of the presence of evolutionarily conserved residues along the central cleft.&amp;lt;ref name=&amp;quot;Ruppel&amp;quot; /&amp;gt;  The actin-binding site and nucleotide-binding site, although dominated by alpha-helices, also contains a straightened section with two cysteine residues.  The can form a disulfide bond in the presence of a nucleotide that prevents ADP from leaving the active site.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
====X-Ray Crystallography and Scattering====&lt;br /&gt;
&lt;br /&gt;
It was not until recently that crystal structures could be used to analyze myosin and it&#039;s role in the actinomysin chemomechanical cycle.  X-ray diffraction studies have been conducted on whole muscles and muscle fibers to learn how structural changes promote and facilitate motor activity.  Movement of myosin was analyzed under near physiological conditions using modern synchrotron radiation sources.  Structural alterations were created through use of unique time and spatial resolution.  Muscle cells exhibit low scattering power in X-ray images, so a clear crystalline structure cannot not form.  A flat detector is needed because reflections are concentrated in the low angle regions.  Snychrotron radiation generates a monochromatic X-ray breams of diameter 0.2-0.3 mm, similar to that of the muscle fiber, and making high resolution images and video of a single muscle cell possible.&amp;lt;ref name=&amp;quot;Koubassova&amp;quot;&amp;gt;PMID: 22339600&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==Mechanism of Action==&lt;br /&gt;
&lt;br /&gt;
Myosin plays a role in the universal mechanism known as the actinomysin chemomechanical cycle.  Actin binds and releases myosin, causing the myosin lever to interact and relax in a cyclic manner.&amp;lt;ref name=&amp;quot;legacy&amp;quot;&amp;gt;[http://legacy.owensboro.kctcs.edu/gcaplan/anat/notes/api%20notes%20j%20%20muscle%20contraction.htm]&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
[[Image:Image336.png]]&lt;br /&gt;
# Actin and myosin cross bridge enter into the tightly bound rigor complex &lt;br /&gt;
# Working stroke occurs where myosin head pulls actin &lt;br /&gt;
# ATP attaches to myosin head causing it to detach from actin&lt;br /&gt;
# ATP is hydrolyzed into ADP and Pi.  Myosin head prepares for attachment to actin filament again&lt;br /&gt;
&lt;br /&gt;
==Medical Implications and Possible Applications==&lt;br /&gt;
&lt;br /&gt;
The discovery of myosin structure served as a crucial component in understanding the causes of many health related problems.  Dysfunctional myosin mutations have been linked to hypertrophy in the heart.  The power strokes are weaker, making muscle contractions less effective.  The heart enlarges to compensate for inadequate cardiac muscle contractions and consequent poor blood circulation.  Also, blood platelet contractile protein aggregation and secretion is impeded by faulty myosin in patients suffering from idiopathic scoliosis.  A defect in the less-well known myosin VIIA causes Usher 1B syndrome; causing a loss of sight and hearing impairments.  Further research will hopefully give more insight into the unknown causes of other diseases and disorders linked to myosin protein mutations.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==References==&lt;br /&gt;
&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Nishika Patel</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_479&amp;diff=1386173</id>
		<title>Sandbox Reserved 479</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_479&amp;diff=1386173"/>
		<updated>2012-05-02T19:19:30Z</updated>

		<summary type="html">&lt;p&gt;Nishika Patel: /* Active Site */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Sandbox_Reserved_Robert_B_Rose_1}}&lt;br /&gt;
&amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
=&#039;&#039;&#039;MYOSIN&#039;&#039;&#039;=&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Myosin&#039;&#039;&#039; is comprised of many different classes of motor proteins within one of three families: actin-based myosin, microtubule-based kinesin, and dynein.&amp;lt;ref name=&amp;quot;Ruppel&amp;quot; /&amp;gt;  It is universal in all eukaryotic cells.&amp;lt;ref name=&amp;quot;Varkuti&amp;quot;&amp;gt;PMID: 22343723&amp;lt;/ref&amp;gt;  Myosin II is the more well known form of myosin that is involved in muscle contractions; it acts in complex with [[actin]] to create a powerstroke and cause muscular contraction and relaxation.&amp;lt;ref name=&amp;quot;Ruppel&amp;quot;&amp;gt;PMID: 8862525&amp;lt;/ref&amp;gt;  Myosin is the contractile unit of a sarcomere.  Repeating units of sarcomeres make up a myofibril (muscle fiber), and bundles of fibers make up a skeletal muscle. The figure below (right) is a proteolytic fragment of myosin generated by papain digestion in &#039;&#039;Gallus gallus&#039;&#039; (chicken).&lt;br /&gt;
{{STRUCTURE_2mys| PDB=2mys | SCENE= }}&lt;br /&gt;
&lt;br /&gt;
==Structure==&lt;br /&gt;
&lt;br /&gt;
Myosin is a 520 kDa hexamer, or a &#039;&#039;&#039;hexa-oligomer&#039;&#039;&#039; (6 subunit) structure.  It is comprised of two heavy chains (weighing 220 kDa each) and 4 light chains (weighing 20 kDa each).&amp;lt;ref name=&amp;quot;CHEM43&amp;quot;&amp;gt;[http://www.cs.stedwards.edu/chem/Chemistry/CHEM43/CHEM43/Myosin/STRUCT~1.HTM]&amp;lt;/ref&amp;gt;  The hexamer&#039;s 2 identical heavy chains connected via the coiled coil structure, and each containing a regulatory and essential light chain (total of 4).&amp;lt;ref name=&amp;quot;sampath&amp;quot; /&amp;gt;  The 2-D structure below of myosin II shows 7 stranded &amp;lt;scene name=&#039;Sandbox_Reserved_479/2mys_beta_sheet/2&#039;&amp;gt;beta sheet&amp;lt;/scene&amp;gt; (Jmol) and the ATP-binding site between the middle and N-terminal of the protein.  The C-terminal contains the light chains (regulatory domain) and acts as the lever arm to enhance the converter domain&#039;s rotational movements.&amp;lt;ref name=&amp;quot;sampath&amp;quot;&amp;gt;[http://www.sampath.koppole.com/research.htm]&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
[[Image:Mds1.png]]&lt;br /&gt;
&lt;br /&gt;
====Secondary Structure====&lt;br /&gt;
&lt;br /&gt;
The N-terminal comprises a globular head in the heavy chains, and the C-terminal ends with an alpha helix.  The globular head region is also known as S1 (actin-binding site and nucleotide-binding site), and also contains mostly &amp;lt;scene name=&#039;Sandbox_Reserved_479/2mys_alpha_helices/1&#039;&amp;gt;alpha helices&amp;lt;/scene&amp;gt; that are critical to maintaining structure.  The C-terminal end contains interspersed hydrophobic regions that give rise to a &amp;quot;coiled-coil structure.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;  &lt;br /&gt;
&lt;br /&gt;
====Active Site====&lt;br /&gt;
&lt;br /&gt;
The actin-binding, &amp;lt;scene name=&#039;Sandbox_Reserved_479/2mys_active_site/1&#039;&amp;gt;catalytic site&amp;lt;/scene&amp;gt; of myosin is known as S1 (subfragment 1).  This is the amino-terminal (N-terminal) globular head portion of the myosin molecule in a region known as the activation loop.&amp;lt;ref name=&amp;quot;Varkuti&amp;quot; /&amp;gt;  The S1 head is divided into three subdomains: the NH2-terminal 25 kDa region, a central 50 kDa region, and the COOH-terminal 20 kDa region.  Further analysis of the S1 active site of myosin suggests that the γ-phosphate (of ATP) binds near the apex of the 50 kDa cleft.  It is believed to be a region critical to function, because of the presence of evolutionarily conserved residues along the central cleft.&amp;lt;ref name=&amp;quot;Ruppel&amp;quot; /&amp;gt;  The actin-binding site and nucleotide-binding site, although dominated by alpha-helices, also contains a straightened section with two cysteine residues.  The can form a disulfide bond in the presence of a nucleotide that prevents ADP from leaving the active site.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
====X-Ray Crystallography and Scattering====&lt;br /&gt;
&lt;br /&gt;
It was not until recently that crystal structures could be used to analyze myosin and it&#039;s role in the actinomysin chemomechanical cycle.  X-ray diffraction studies have been conducted on whole muscles and muscle fibers to learn how structural changes promote and facilitate motor activity.  Movement of myosin was analyzed under near physiological conditions using modern synchrotron radiation sources.  Structural alterations were created through use of unique time and spatial resolution.  Muscle cells exhibit low scattering power in X-ray images, so a clear crystalline structure cannot not form.  A flat detector is needed because reflections are concentrated in the low angle regions.  Snychrotron radiation generates a monochromatic X-ray breams of diameter 0.2-0.3 mm, similar to that of the muscle fiber, and making high resolution images and video of a single muscle cell possible.&amp;lt;ref name=&amp;quot;Koubassova&amp;quot;&amp;gt;PMID: 22339600&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==Mechanism of Action==&lt;br /&gt;
&lt;br /&gt;
Myosin plays a role in the universal mechanism known as the actinomysin chemomechanical cycle.  Actin binds and releases myosin, causing the myosin lever to interact and relax in a cyclic manner.&amp;lt;ref name=&amp;quot;legacy&amp;quot;&amp;gt;[http://legacy.owensboro.kctcs.edu/gcaplan/anat/notes/api%20notes%20j%20%20muscle%20contraction.htm]&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
[[Image:Image336.png]]&lt;br /&gt;
# Actin and myosin cross bridge enter into the tightly bound rigor complex &lt;br /&gt;
# Working stroke occurs where myosin head pulls actin &lt;br /&gt;
# ATP attaches to myosin head causing it to detach from actin&lt;br /&gt;
# ATP is hydrolyzed into ADP and Pi.  Myosin head prepares for attachment to actin filament again&lt;br /&gt;
&lt;br /&gt;
==Medical Implications and Possible Applications==&lt;br /&gt;
&lt;br /&gt;
The discovery of myosin structure served as a crucial component in understanding the causes of many health related problems.  Dysfunctional myosin mutations have been linked to hypertrophy in the heart.  The power strokes are weaker, making muscle contractions less effective.  The heart enlarges to compensate for inadequate cardiac muscle contractions and consequent poor blood circulation.  Also, blood platelet contractile protein aggregation and secretion is impeded by faulty myosin in patients suffering from idiopathic scoliosis.  A defect in the less-well known myosin VIIA causes Usher 1B syndrome; causing a loss of sight and hearing impairments.  Further research will hopefully give more insight into the unknown causes of other diseases and disorders linked to myosin protein mutations.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==References==&lt;br /&gt;
&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Nishika Patel</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_479&amp;diff=1385963</id>
		<title>Sandbox Reserved 479</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_479&amp;diff=1385963"/>
		<updated>2012-05-02T19:15:12Z</updated>

		<summary type="html">&lt;p&gt;Nishika Patel: /* &amp;#039;&amp;#039;&amp;#039;MYOSIN&amp;#039;&amp;#039;&amp;#039; */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Sandbox_Reserved_Robert_B_Rose_1}}&lt;br /&gt;
&amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
=&#039;&#039;&#039;MYOSIN&#039;&#039;&#039;=&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Myosin&#039;&#039;&#039; is comprised of many different classes of motor proteins within one of three families: actin-based myosin, microtubule-based kinesin, and dynein.&amp;lt;ref name=&amp;quot;Ruppel&amp;quot; /&amp;gt;  It is universal in all eukaryotic cells.&amp;lt;ref name=&amp;quot;Varkuti&amp;quot;&amp;gt;PMID: 22343723&amp;lt;/ref&amp;gt;  Myosin II is the more well known form of myosin that is involved in muscle contractions; it acts in complex with [[actin]] to create a powerstroke and cause muscular contraction and relaxation.&amp;lt;ref name=&amp;quot;Ruppel&amp;quot;&amp;gt;PMID: 8862525&amp;lt;/ref&amp;gt;  Myosin is the contractile unit of a sarcomere.  Repeating units of sarcomeres make up a myofibril (muscle fiber), and bundles of fibers make up a skeletal muscle. The figure below (right) is a proteolytic fragment of myosin generated by papain digestion in &#039;&#039;Gallus gallus&#039;&#039; (chicken).&lt;br /&gt;
{{STRUCTURE_2mys| PDB=2mys | SCENE= }}&lt;br /&gt;
&lt;br /&gt;
==Structure==&lt;br /&gt;
&lt;br /&gt;
Myosin is a 520 kDa hexamer, or a &#039;&#039;&#039;hexa-oligomer&#039;&#039;&#039; (6 subunit) structure.  It is comprised of two heavy chains (weighing 220 kDa each) and 4 light chains (weighing 20 kDa each).&amp;lt;ref name=&amp;quot;CHEM43&amp;quot;&amp;gt;[http://www.cs.stedwards.edu/chem/Chemistry/CHEM43/CHEM43/Myosin/STRUCT~1.HTM]&amp;lt;/ref&amp;gt;  The hexamer&#039;s 2 identical heavy chains connected via the coiled coil structure, and each containing a regulatory and essential light chain (total of 4).&amp;lt;ref name=&amp;quot;sampath&amp;quot; /&amp;gt;  The 2-D structure below of myosin II shows 7 stranded &amp;lt;scene name=&#039;Sandbox_Reserved_479/2mys_beta_sheet/2&#039;&amp;gt;beta sheet&amp;lt;/scene&amp;gt; (Jmol) and the ATP-binding site between the middle and N-terminal of the protein.  The C-terminal contains the light chains (regulatory domain) and acts as the lever arm to enhance the converter domain&#039;s rotational movements.&amp;lt;ref name=&amp;quot;sampath&amp;quot;&amp;gt;[http://www.sampath.koppole.com/research.htm]&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
[[Image:Mds1.png]]&lt;br /&gt;
&lt;br /&gt;
====Secondary Structure====&lt;br /&gt;
&lt;br /&gt;
The N-terminal comprises a globular head in the heavy chains, and the C-terminal ends with an alpha helix.  The globular head region is also known as S1 (actin-binding site and nucleotide-binding site), and also contains mostly &amp;lt;scene name=&#039;Sandbox_Reserved_479/2mys_alpha_helices/1&#039;&amp;gt;alpha helices&amp;lt;/scene&amp;gt; that are critical to maintaining structure.  The C-terminal end contains interspersed hydrophobic regions that give rise to a &amp;quot;coiled-coil structure.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;  &lt;br /&gt;
&lt;br /&gt;
====Active Site====&lt;br /&gt;
&lt;br /&gt;
The actin-binding, &amp;lt;scene name=&#039;Sandbox_Reserved_479/2mys_active_site/1&#039;&amp;gt;catalytic site&amp;lt;/scene&amp;gt; of myosin is known as S1 (subfragment 1).  This is the amino-terminal globular head portion of the myosin molecule.  The S1 head is divided into three subdomains: the NH2-terminal 25 kDa region, a central 50 kDa region, and the COOH-terminal 20 kDa region.  Further analysis of the S1 active site of myosin suggests that the γ-phosphate (of ATP) binds near the apex of the 50 kDa cleft.  It is believed to be a region critical to function, because of the presence of evolutionarily conserved residues along the central cleft.&amp;lt;ref name=&amp;quot;Ruppel&amp;quot; /&amp;gt;  The actin-binding site and nucleotide-binding site, although dominated by alpha-helices, also contains a straightened section with two cysteine residues.  The can form a disulfide bond in the presence of a nucleotide that prevents ADP from leaving the active site.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
====X-Ray Crystallography and Scattering====&lt;br /&gt;
&lt;br /&gt;
It was not until recently that crystal structures could be used to analyze myosin and it&#039;s role in the actinomysin chemomechanical cycle.  X-ray diffraction studies have been conducted on whole muscles and muscle fibers to learn how structural changes promote and facilitate motor activity.  Movement of myosin was analyzed under near physiological conditions using modern synchrotron radiation sources.  Structural alterations were created through use of unique time and spatial resolution.  Muscle cells exhibit low scattering power in X-ray images, so a clear crystalline structure cannot not form.  A flat detector is needed because reflections are concentrated in the low angle regions.  Snychrotron radiation generates a monochromatic X-ray breams of diameter 0.2-0.3 mm, similar to that of the muscle fiber, and making high resolution images and video of a single muscle cell possible.&amp;lt;ref name=&amp;quot;Koubassova&amp;quot;&amp;gt;PMID: 22339600&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==Mechanism of Action==&lt;br /&gt;
&lt;br /&gt;
Myosin plays a role in the universal mechanism known as the actinomysin chemomechanical cycle.  Actin binds and releases myosin, causing the myosin lever to interact and relax in a cyclic manner.&amp;lt;ref name=&amp;quot;legacy&amp;quot;&amp;gt;[http://legacy.owensboro.kctcs.edu/gcaplan/anat/notes/api%20notes%20j%20%20muscle%20contraction.htm]&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
[[Image:Image336.png]]&lt;br /&gt;
# Actin and myosin cross bridge enter into the tightly bound rigor complex &lt;br /&gt;
# Working stroke occurs where myosin head pulls actin &lt;br /&gt;
# ATP attaches to myosin head causing it to detach from actin&lt;br /&gt;
# ATP is hydrolyzed into ADP and Pi.  Myosin head prepares for attachment to actin filament again&lt;br /&gt;
&lt;br /&gt;
==Medical Implications and Possible Applications==&lt;br /&gt;
&lt;br /&gt;
The discovery of myosin structure served as a crucial component in understanding the causes of many health related problems.  Dysfunctional myosin mutations have been linked to hypertrophy in the heart.  The power strokes are weaker, making muscle contractions less effective.  The heart enlarges to compensate for inadequate cardiac muscle contractions and consequent poor blood circulation.  Also, blood platelet contractile protein aggregation and secretion is impeded by faulty myosin in patients suffering from idiopathic scoliosis.  A defect in the less-well known myosin VIIA causes Usher 1B syndrome; causing a loss of sight and hearing impairments.  Further research will hopefully give more insight into the unknown causes of other diseases and disorders linked to myosin protein mutations.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==References==&lt;br /&gt;
&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Nishika Patel</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_479&amp;diff=1385875</id>
		<title>Sandbox Reserved 479</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_479&amp;diff=1385875"/>
		<updated>2012-05-02T19:08:57Z</updated>

		<summary type="html">&lt;p&gt;Nishika Patel: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Sandbox_Reserved_Robert_B_Rose_1}}&lt;br /&gt;
&amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
=&#039;&#039;&#039;MYOSIN&#039;&#039;&#039;=&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Myosin&#039;&#039;&#039; is comprised of many different classes of motor proteins, and is universal in all eukaryotic cells.&amp;lt;ref name=&amp;quot;Varkuti&amp;quot;&amp;gt;PMID: 22343723&amp;lt;/ref&amp;gt;  Myosin II is the more well known form of myosin that is involved in muscle contractions; it acts in complex with [[actin]] to create a powerstroke and cause muscular contraction and relaxation.&amp;lt;ref name=&amp;quot;Ruppel&amp;quot;&amp;gt;PMID: 8862525&amp;lt;/ref&amp;gt;  Myosin is the contractile unit of a sarcomere.  Repeating units of sarcomeres make up a myofibril (muscle fiber), and bundles of fibers make up a skeletal muscle. The figure below (right) is a proteolytic fragment of myosin generated by papain digestion in &#039;&#039;Gallus gallus&#039;&#039; (chicken).&lt;br /&gt;
{{STRUCTURE_2mys| PDB=2mys | SCENE= }}&lt;br /&gt;
&lt;br /&gt;
==Structure==&lt;br /&gt;
&lt;br /&gt;
Myosin is a 520 kDa hexamer, or a &#039;&#039;&#039;hexa-oligomer&#039;&#039;&#039; (6 subunit) structure.  It is comprised of two heavy chains (weighing 220 kDa each) and 4 light chains (weighing 20 kDa each).&amp;lt;ref name=&amp;quot;CHEM43&amp;quot;&amp;gt;[http://www.cs.stedwards.edu/chem/Chemistry/CHEM43/CHEM43/Myosin/STRUCT~1.HTM]&amp;lt;/ref&amp;gt;  The hexamer&#039;s 2 identical heavy chains connected via the coiled coil structure, and each containing a regulatory and essential light chain (total of 4).&amp;lt;ref name=&amp;quot;sampath&amp;quot; /&amp;gt;  The 2-D structure below of myosin II shows 7 stranded &amp;lt;scene name=&#039;Sandbox_Reserved_479/2mys_beta_sheet/2&#039;&amp;gt;beta sheet&amp;lt;/scene&amp;gt; (Jmol) and the ATP-binding site between the middle and N-terminal of the protein.  The C-terminal contains the light chains (regulatory domain) and acts as the lever arm to enhance the converter domain&#039;s rotational movements.&amp;lt;ref name=&amp;quot;sampath&amp;quot;&amp;gt;[http://www.sampath.koppole.com/research.htm]&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
[[Image:Mds1.png]]&lt;br /&gt;
&lt;br /&gt;
====Secondary Structure====&lt;br /&gt;
&lt;br /&gt;
The N-terminal comprises a globular head in the heavy chains, and the C-terminal ends with an alpha helix.  The globular head region is also known as S1 (actin-binding site and nucleotide-binding site), and also contains mostly &amp;lt;scene name=&#039;Sandbox_Reserved_479/2mys_alpha_helices/1&#039;&amp;gt;alpha helices&amp;lt;/scene&amp;gt; that are critical to maintaining structure.  The C-terminal end contains interspersed hydrophobic regions that give rise to a &amp;quot;coiled-coil structure.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;  &lt;br /&gt;
&lt;br /&gt;
====Active Site====&lt;br /&gt;
&lt;br /&gt;
The actin-binding, &amp;lt;scene name=&#039;Sandbox_Reserved_479/2mys_active_site/1&#039;&amp;gt;catalytic site&amp;lt;/scene&amp;gt; of myosin is known as S1 (subfragment 1).  This is the amino-terminal globular head portion of the myosin molecule.  The S1 head is divided into three subdomains: the NH2-terminal 25 kDa region, a central 50 kDa region, and the COOH-terminal 20 kDa region.  Further analysis of the S1 active site of myosin suggests that the γ-phosphate (of ATP) binds near the apex of the 50 kDa cleft.  It is believed to be a region critical to function, because of the presence of evolutionarily conserved residues along the central cleft.&amp;lt;ref name=&amp;quot;Ruppel&amp;quot; /&amp;gt;  The actin-binding site and nucleotide-binding site, although dominated by alpha-helices, also contains a straightened section with two cysteine residues.  The can form a disulfide bond in the presence of a nucleotide that prevents ADP from leaving the active site.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
====X-Ray Crystallography and Scattering====&lt;br /&gt;
&lt;br /&gt;
It was not until recently that crystal structures could be used to analyze myosin and it&#039;s role in the actinomysin chemomechanical cycle.  X-ray diffraction studies have been conducted on whole muscles and muscle fibers to learn how structural changes promote and facilitate motor activity.  Movement of myosin was analyzed under near physiological conditions using modern synchrotron radiation sources.  Structural alterations were created through use of unique time and spatial resolution.  Muscle cells exhibit low scattering power in X-ray images, so a clear crystalline structure cannot not form.  A flat detector is needed because reflections are concentrated in the low angle regions.  Snychrotron radiation generates a monochromatic X-ray breams of diameter 0.2-0.3 mm, similar to that of the muscle fiber, and making high resolution images and video of a single muscle cell possible.&amp;lt;ref name=&amp;quot;Koubassova&amp;quot;&amp;gt;PMID: 22339600&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==Mechanism of Action==&lt;br /&gt;
&lt;br /&gt;
Myosin plays a role in the universal mechanism known as the actinomysin chemomechanical cycle.  Actin binds and releases myosin, causing the myosin lever to interact and relax in a cyclic manner.&amp;lt;ref name=&amp;quot;legacy&amp;quot;&amp;gt;[http://legacy.owensboro.kctcs.edu/gcaplan/anat/notes/api%20notes%20j%20%20muscle%20contraction.htm]&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
[[Image:Image336.png]]&lt;br /&gt;
# Actin and myosin cross bridge enter into the tightly bound rigor complex &lt;br /&gt;
# Working stroke occurs where myosin head pulls actin &lt;br /&gt;
# ATP attaches to myosin head causing it to detach from actin&lt;br /&gt;
# ATP is hydrolyzed into ADP and Pi.  Myosin head prepares for attachment to actin filament again&lt;br /&gt;
&lt;br /&gt;
==Medical Implications and Possible Applications==&lt;br /&gt;
&lt;br /&gt;
The discovery of myosin structure served as a crucial component in understanding the causes of many health related problems.  Dysfunctional myosin mutations have been linked to hypertrophy in the heart.  The power strokes are weaker, making muscle contractions less effective.  The heart enlarges to compensate for inadequate cardiac muscle contractions and consequent poor blood circulation.  Also, blood platelet contractile protein aggregation and secretion is impeded by faulty myosin in patients suffering from idiopathic scoliosis.  A defect in the less-well known myosin VIIA causes Usher 1B syndrome; causing a loss of sight and hearing impairments.  Further research will hopefully give more insight into the unknown causes of other diseases and disorders linked to myosin protein mutations.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==References==&lt;br /&gt;
&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Nishika Patel</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_479&amp;diff=1385867</id>
		<title>Sandbox Reserved 479</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_479&amp;diff=1385867"/>
		<updated>2012-05-02T19:05:38Z</updated>

		<summary type="html">&lt;p&gt;Nishika Patel: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Sandbox_Reserved_Robert_B_Rose_1}}&lt;br /&gt;
&amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Myosin&#039;&#039;&#039; is comprised of many different classes of motor proteins, and is universal in all eukaryotic cells.&amp;lt;ref name=&amp;quot;Varkuti&amp;quot;&amp;gt;PMID: 22343723&amp;lt;/ref&amp;gt;  Myosin II is the more well known form of myosin that is involved in muscle contractions; it acts in complex with [[actin]] to create a powerstroke and cause muscular contraction and relaxation.&amp;lt;ref name=&amp;quot;Ruppel&amp;quot;&amp;gt;PMID: 8862525&amp;lt;/ref&amp;gt;  Myosin is the contractile unit of a sarcomere.  Repeating units of sarcomeres make up a myofibril (muscle fiber), and bundles of fibers make up a skeletal muscle. The figure below (right) is a proteolytic fragment of myosin generated by papain digestion in &#039;&#039;Gallus gallus&#039;&#039; (chicken).&lt;br /&gt;
{{STRUCTURE_2mys| PDB=2mys | SCENE= }}&lt;br /&gt;
&lt;br /&gt;
==Structure==&lt;br /&gt;
&lt;br /&gt;
Myosin is a 520 kDa hexamer, or a &#039;&#039;&#039;hexa-oligomer&#039;&#039;&#039; (6 subunit) structure.  It is comprised of two heavy chains (weighing 220 kDa each) and 4 light chains (weighing 20 kDa each).&amp;lt;ref name=&amp;quot;CHEM43&amp;quot;&amp;gt;[http://www.cs.stedwards.edu/chem/Chemistry/CHEM43/CHEM43/Myosin/STRUCT~1.HTM]&amp;lt;/ref&amp;gt;  The hexamer&#039;s 2 identical heavy chains connected via the coiled coil structure, and each containing a regulatory and essential light chain (total of 4).&amp;lt;ref name=&amp;quot;sampath&amp;quot; /&amp;gt;  The 2-D structure below of myosin II shows 7 stranded &amp;lt;scene name=&#039;Sandbox_Reserved_479/2mys_beta_sheet/2&#039;&amp;gt;beta sheet&amp;lt;/scene&amp;gt; (Jmol) and the ATP-binding site between the middle and N-terminal of the protein.  The C-terminal contains the light chains (regulatory domain) and acts as the lever arm to enhance the converter domain&#039;s rotational movements.&amp;lt;ref name=&amp;quot;sampath&amp;quot;&amp;gt;[http://www.sampath.koppole.com/research.htm]&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
[[Image:Mds1.png]]&lt;br /&gt;
&lt;br /&gt;
====Secondary Structure====&lt;br /&gt;
&lt;br /&gt;
The N-terminal comprises a globular head in the heavy chains, and the C-terminal ends with an alpha helix.  The globular head region is also known as S1 (actin-binding site and nucleotide-binding site), and also contains mostly &amp;lt;scene name=&#039;Sandbox_Reserved_479/2mys_alpha_helices/1&#039;&amp;gt;alpha helices&amp;lt;/scene&amp;gt; that are critical to maintaining structure.  The C-terminal end contains interspersed hydrophobic regions that give rise to a &amp;quot;coiled-coil structure.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;  &lt;br /&gt;
&lt;br /&gt;
====Active Site====&lt;br /&gt;
&lt;br /&gt;
The actin-binding, &amp;lt;scene name=&#039;Sandbox_Reserved_479/2mys_active_site/1&#039;&amp;gt;catalytic site&amp;lt;/scene&amp;gt; of myosin is known as S1 (subfragment 1).  This is the amino-terminal globular head portion of the myosin molecule.  The S1 head is divided into three subdomains: the NH2-terminal 25 kDa region, a central 50 kDa region, and the COOH-terminal 20 kDa region.  Further analysis of the S1 active site of myosin suggests that the γ-phosphate (of ATP) binds near the apex of the 50 kDa cleft.  It is believed to be a region critical to function, because of the presence of evolutionarily conserved residues along the central cleft.&amp;lt;ref name=&amp;quot;Ruppel&amp;quot; /&amp;gt;  The actin-binding site and nucleotide-binding site, although dominated by alpha-helices, also contains a straightened section with two cysteine residues.  The can form a disulfide bond in the presence of a nucleotide that prevents ADP from leaving the active site.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
====X-Ray Crystallography and Scattering====&lt;br /&gt;
&lt;br /&gt;
It was not until recently that crystal structures could be used to analyze myosin and it&#039;s role in the actinomysin chemomechanical cycle.  X-ray diffraction studies have been conducted on whole muscles and muscle fibers to learn how structural changes promote and facilitate motor activity.  Movement of myosin was analyzed under near physiological conditions using modern synchrotron radiation sources.  Structural alterations were created through use of unique time and spatial resolution.  Muscle cells exhibit low scattering power in X-ray images, so a clear crystalline structure cannot not form.  A flat detector is needed because reflections are concentrated in the low angle regions.  Snychrotron radiation generates a monochromatic X-ray breams of diameter 0.2-0.3 mm, similar to that of the muscle fiber, and making high resolution images and video of a single muscle cell possible.&amp;lt;ref name=&amp;quot;Koubassova&amp;quot;&amp;gt;PMID: 22339600&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==Mechanism of Action==&lt;br /&gt;
&lt;br /&gt;
Myosin plays a role in the universal mechanism known as the actinomysin chemomechanical cycle.  Actin binds and releases myosin, causing the myosin lever to interact and relax in a cyclic manner.&amp;lt;ref name=&amp;quot;legacy&amp;quot;&amp;gt;[http://legacy.owensboro.kctcs.edu/gcaplan/anat/notes/api%20notes%20j%20%20muscle%20contraction.htm]&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
[[Image:Image336.png]]&lt;br /&gt;
# Actin and myosin cross bridge enter into the tightly bound rigor complex &lt;br /&gt;
# Working stroke occurs where myosin head pulls actin &lt;br /&gt;
# ATP attaches to myosin head causing it to detach from actin&lt;br /&gt;
# ATP is hydrolyzed into ADP and Pi.  Myosin head prepares for attachment to actin filament again&lt;br /&gt;
&lt;br /&gt;
==Medical Implications and Possible Applications==&lt;br /&gt;
&lt;br /&gt;
The discovery of myosin structure served as a crucial component in understanding the causes of many health related problems.  Dysfunctional myosin mutations have been linked to hypertrophy in the heart.  The power strokes are weaker, making muscle contractions less effective.  The heart enlarges to compensate for inadequate cardiac muscle contractions and consequent poor blood circulation.  Also, blood platelet contractile protein aggregation and secretion is impeded by faulty myosin in patients suffering from idiopathic scoliosis.  A defect in the less-well known myosin VIIA causes Usher 1B syndrome; causing a loss of sight and hearing impairments.  Further research will hopefully give more insight into the unknown causes of other diseases and disorders linked to myosin protein mutations.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==References==&lt;br /&gt;
&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Nishika Patel</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_479&amp;diff=1385783</id>
		<title>Sandbox Reserved 479</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_479&amp;diff=1385783"/>
		<updated>2012-05-02T19:00:51Z</updated>

		<summary type="html">&lt;p&gt;Nishika Patel: /* Structure */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Sandbox_Reserved_Robert_B_Rose_1}}&lt;br /&gt;
&amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Myosin&#039;&#039;&#039; is comprised of 35 different classes of motor proteins, and is universal in all eukaryotic cells.&amp;lt;ref name=&amp;quot;Varkuti&amp;quot;&amp;gt;PMID: 22343723&amp;lt;/ref&amp;gt;  Myosin II is the more well known form of myosin that is involved in muscle contractions; it acts in complex with [[actin]] to create a powerstroke and cause muscular contraction and relaxation.&amp;lt;ref name=&amp;quot;Ruppel&amp;quot;&amp;gt;PMID: 8862525&amp;lt;/ref&amp;gt;  Myosin is the contractile unit of a sarcomere.  Repeating units of sarcomeres make up a myofibril (muscle fiber), and bundles of fibers make up a skeletal muscle. The figure below (right) is a proteolytic fragment of myosin generated by papain digestion in &#039;&#039;Gallus gallus&#039;&#039; (chicken).&lt;br /&gt;
{{STRUCTURE_2mys| PDB=2mys | SCENE= }}&lt;br /&gt;
&lt;br /&gt;
==Structure==&lt;br /&gt;
&lt;br /&gt;
Myosin is a 520 kDa hexamer, or a &#039;&#039;&#039;hexa-oligomer&#039;&#039;&#039; (6 subunit) structure.  It is comprised of two heavy chains (weighing 220 kDa each) and 4 light chains (weighing 20 kDa each).&amp;lt;ref name=&amp;quot;CHEM43&amp;quot;&amp;gt;[http://www.cs.stedwards.edu/chem/Chemistry/CHEM43/CHEM43/Myosin/STRUCT~1.HTM]&amp;lt;/ref&amp;gt;  The hexamer&#039;s 2 identical heavy chains connected via the coiled coil structure, and each containing a regulatory and essential light chain (total of 4).&amp;lt;ref name=&amp;quot;sampath&amp;quot; /&amp;gt;  The 2-D structure below of myosin II shows 7 stranded &amp;lt;scene name=&#039;Sandbox_Reserved_479/2mys_beta_sheet/2&#039;&amp;gt;beta sheet&amp;lt;/scene&amp;gt; (Jmol) and the ATP-binding site between the middle and N-terminal of the protein.  The C-terminal contains the light chains (regulatory domain) and acts as the lever arm to enhance the converter domain&#039;s rotational movements.&amp;lt;ref name=&amp;quot;sampath&amp;quot;&amp;gt;[http://www.sampath.koppole.com/research.htm]&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
[[Image:Mds1.png]]&lt;br /&gt;
&lt;br /&gt;
====Secondary Structure====&lt;br /&gt;
&lt;br /&gt;
The N-terminal comprises a globular head in the heavy chains, and the C-terminal ends with an alpha helix.  The globular head region is also known as S1 (actin-binding site and nucleotide-binding site), and also contains mostly &amp;lt;scene name=&#039;Sandbox_Reserved_479/2mys_alpha_helices/1&#039;&amp;gt;alpha helices&amp;lt;/scene&amp;gt; that are critical to maintaining structure.  The C-terminal end contains interspersed hydrophobic regions that give rise to a &amp;quot;coiled-coil structure.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;  &lt;br /&gt;
&lt;br /&gt;
====Active Site====&lt;br /&gt;
&lt;br /&gt;
The actin-binding, &amp;lt;scene name=&#039;Sandbox_Reserved_479/2mys_active_site/1&#039;&amp;gt;catalytic site&amp;lt;/scene&amp;gt; of myosin is known as S1 (subfragment 1).  This is the amino-terminal globular head portion of the myosin molecule.  The S1 head is divided into three subdomains: the NH2-terminal 25 kDa region, a central 50 kDa region, and the COOH-terminal 20 kDa region.  Further analysis of the S1 active site of myosin suggests that the γ-phosphate (of ATP) binds near the apex of the 50 kDa cleft.  It is believed to be a region critical to function, because of the presence of evolutionarily conserved residues along the central cleft.&amp;lt;ref name=&amp;quot;Ruppel&amp;quot; /&amp;gt;  The actin-binding site and nucleotide-binding site, although dominated by alpha-helices, also contains a straightened section with two cysteine residues.  The can form a disulfide bond in the presence of a nucleotide that prevents ADP from leaving the active site.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
====X-Ray Crystallography and Scattering====&lt;br /&gt;
&lt;br /&gt;
It was not until recently that crystal structures could be used to analyze myosin and it&#039;s role in the actinomysin chemomechanical cycle.  X-ray diffraction studies have been conducted on whole muscles and muscle fibers to learn how structural changes promote and facilitate motor activity.  Movement of myosin was analyzed under near physiological conditions using modern synchrotron radiation sources.  Structural alterations were created through use of unique time and spatial resolution.  Muscle cells exhibit low scattering power in X-ray images, so a clear crystalline structure cannot not form.  A flat detector is needed because reflections are concentrated in the low angle regions.  Snychrotron radiation generates a monochromatic X-ray breams of diameter 0.2-0.3 mm, similar to that of the muscle fiber, and making high resolution images and video of a single muscle cell possible.&amp;lt;ref name=&amp;quot;Koubassova&amp;quot;&amp;gt;PMID: 22339600&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==Mechanism of Action==&lt;br /&gt;
&lt;br /&gt;
Myosin plays a role in the universal mechanism known as the actinomysin chemomechanical cycle.  Actin binds and releases myosin, causing the myosin lever to interact and relax in a cyclic manner.&amp;lt;ref name=&amp;quot;legacy&amp;quot;&amp;gt;[http://legacy.owensboro.kctcs.edu/gcaplan/anat/notes/api%20notes%20j%20%20muscle%20contraction.htm]&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
[[Image:Image336.png]]&lt;br /&gt;
# Actin and myosin cross bridge enter into the tightly bound rigor complex &lt;br /&gt;
# Working stroke occurs where myosin head pulls actin &lt;br /&gt;
# ATP attaches to myosin head causing it to detach from actin&lt;br /&gt;
# ATP is hydrolyzed into ADP and Pi.  Myosin head prepares for attachment to actin filament again&lt;br /&gt;
&lt;br /&gt;
==Medical Implications and Possible Applications==&lt;br /&gt;
&lt;br /&gt;
The discovery of myosin structure served as a crucial component in understanding the causes of many health related problems.  Dysfunctional myosin mutations have been linked to hypertrophy in the heart.  The power strokes are weaker, making muscle contractions less effective.  The heart enlarges to compensate for inadequate cardiac muscle contractions and consequent poor blood circulation.  Also, blood platelet contractile protein aggregation and secretion is impeded by faulty myosin in patients suffering from idiopathic scoliosis.  A defect in the less-well known myosin VIIA causes Usher 1B syndrome; causing a loss of sight and hearing impairments.  Further research will hopefully give more insight into the unknown causes of other diseases and disorders linked to myosin protein mutations.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==References==&lt;br /&gt;
&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Nishika Patel</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_479&amp;diff=1385683</id>
		<title>Sandbox Reserved 479</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_479&amp;diff=1385683"/>
		<updated>2012-05-02T18:59:30Z</updated>

		<summary type="html">&lt;p&gt;Nishika Patel: /* Secondary Structure */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Sandbox_Reserved_Robert_B_Rose_1}}&lt;br /&gt;
&amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Myosin&#039;&#039;&#039; is comprised of 35 different classes of motor proteins, and is universal in all eukaryotic cells.&amp;lt;ref name=&amp;quot;Varkuti&amp;quot;&amp;gt;PMID: 22343723&amp;lt;/ref&amp;gt;  Myosin II is the more well known form of myosin that is involved in muscle contractions; it acts in complex with [[actin]] to create a powerstroke and cause muscular contraction and relaxation.&amp;lt;ref name=&amp;quot;Ruppel&amp;quot;&amp;gt;PMID: 8862525&amp;lt;/ref&amp;gt;  Myosin is the contractile unit of a sarcomere.  Repeating units of sarcomeres make up a myofibril (muscle fiber), and bundles of fibers make up a skeletal muscle. The figure below (right) is a proteolytic fragment of myosin generated by papain digestion in &#039;&#039;Gallus gallus&#039;&#039; (chicken).&lt;br /&gt;
{{STRUCTURE_2mys| PDB=2mys | SCENE= }}&lt;br /&gt;
&lt;br /&gt;
==Structure==&lt;br /&gt;
&lt;br /&gt;
Myosin is a 520 kDa hexamer, or a &#039;&#039;&#039;hexa-oligomer&#039;&#039;&#039; (6 subunit) structure.  It is comprised of two heavy chains (weighing 220 kDa each) and 4 light chains (weighing 20 kDa each).&amp;lt;ref name=&amp;quot;CHEM43&amp;quot;&amp;gt;[http://www.cs.stedwards.edu/chem/Chemistry/CHEM43/CHEM43/Myosin/STRUCT~1.HTM]&amp;lt;/ref&amp;gt;  The 2-D structure below of myosin II shows 7 stranded &amp;lt;scene name=&#039;Sandbox_Reserved_479/2mys_beta_sheet/2&#039;&amp;gt;beta sheet&amp;lt;/scene&amp;gt; (Jmol) and the ATP-binding site between the middle and N-terminal of the protein.  The C-terminal contains the light chains (regulatory domain) and acts as the lever arm to enhance the converter domain&#039;s rotational movements.&amp;lt;ref name=&amp;quot;sampath&amp;quot;&amp;gt;[http://www.sampath.koppole.com/research.htm]&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
[[Image:Mds1.png]]&lt;br /&gt;
&lt;br /&gt;
====Secondary Structure====&lt;br /&gt;
&lt;br /&gt;
The N-terminal comprises a globular head in the heavy chains, and the C-terminal ends with an alpha helix.  The globular head region is also known as S1 (actin-binding site and nucleotide-binding site), and also contains mostly &amp;lt;scene name=&#039;Sandbox_Reserved_479/2mys_alpha_helices/1&#039;&amp;gt;alpha helices&amp;lt;/scene&amp;gt; that are critical to maintaining structure.  The C-terminal end contains interspersed hydrophobic regions that give rise to a &amp;quot;coiled-coil structure.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;  The hexamer is composed of 2 heavy chains connected via the coiled coil structure, and each containing a regulatory and essential light chain (total of 4).&amp;lt;ref name=&amp;quot;sampath&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
====Active Site====&lt;br /&gt;
&lt;br /&gt;
The actin-binding, &amp;lt;scene name=&#039;Sandbox_Reserved_479/2mys_active_site/1&#039;&amp;gt;catalytic site&amp;lt;/scene&amp;gt; of myosin is known as S1 (subfragment 1).  This is the amino-terminal globular head portion of the myosin molecule.  The S1 head is divided into three subdomains: the NH2-terminal 25 kDa region, a central 50 kDa region, and the COOH-terminal 20 kDa region.  Further analysis of the S1 active site of myosin suggests that the γ-phosphate (of ATP) binds near the apex of the 50 kDa cleft.  It is believed to be a region critical to function, because of the presence of evolutionarily conserved residues along the central cleft.&amp;lt;ref name=&amp;quot;Ruppel&amp;quot; /&amp;gt;  The actin-binding site and nucleotide-binding site, although dominated by alpha-helices, also contains a straightened section with two cysteine residues.  The can form a disulfide bond in the presence of a nucleotide that prevents ADP from leaving the active site.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
====X-Ray Crystallography and Scattering====&lt;br /&gt;
&lt;br /&gt;
It was not until recently that crystal structures could be used to analyze myosin and it&#039;s role in the actinomysin chemomechanical cycle.  X-ray diffraction studies have been conducted on whole muscles and muscle fibers to learn how structural changes promote and facilitate motor activity.  Movement of myosin was analyzed under near physiological conditions using modern synchrotron radiation sources.  Structural alterations were created through use of unique time and spatial resolution.  Muscle cells exhibit low scattering power in X-ray images, so a clear crystalline structure cannot not form.  A flat detector is needed because reflections are concentrated in the low angle regions.  Snychrotron radiation generates a monochromatic X-ray breams of diameter 0.2-0.3 mm, similar to that of the muscle fiber, and making high resolution images and video of a single muscle cell possible.&amp;lt;ref name=&amp;quot;Koubassova&amp;quot;&amp;gt;PMID: 22339600&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==Mechanism of Action==&lt;br /&gt;
&lt;br /&gt;
Myosin plays a role in the universal mechanism known as the actinomysin chemomechanical cycle.  Actin binds and releases myosin, causing the myosin lever to interact and relax in a cyclic manner.&amp;lt;ref name=&amp;quot;legacy&amp;quot;&amp;gt;[http://legacy.owensboro.kctcs.edu/gcaplan/anat/notes/api%20notes%20j%20%20muscle%20contraction.htm]&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
[[Image:Image336.png]]&lt;br /&gt;
# Actin and myosin cross bridge enter into the tightly bound rigor complex &lt;br /&gt;
# Working stroke occurs where myosin head pulls actin &lt;br /&gt;
# ATP attaches to myosin head causing it to detach from actin&lt;br /&gt;
# ATP is hydrolyzed into ADP and Pi.  Myosin head prepares for attachment to actin filament again&lt;br /&gt;
&lt;br /&gt;
==Medical Implications and Possible Applications==&lt;br /&gt;
&lt;br /&gt;
The discovery of myosin structure served as a crucial component in understanding the causes of many health related problems.  Dysfunctional myosin mutations have been linked to hypertrophy in the heart.  The power strokes are weaker, making muscle contractions less effective.  The heart enlarges to compensate for inadequate cardiac muscle contractions and consequent poor blood circulation.  Also, blood platelet contractile protein aggregation and secretion is impeded by faulty myosin in patients suffering from idiopathic scoliosis.  A defect in the less-well known myosin VIIA causes Usher 1B syndrome; causing a loss of sight and hearing impairments.  Further research will hopefully give more insight into the unknown causes of other diseases and disorders linked to myosin protein mutations.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==References==&lt;br /&gt;
&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Nishika Patel</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_479&amp;diff=1385476</id>
		<title>Sandbox Reserved 479</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_479&amp;diff=1385476"/>
		<updated>2012-05-02T18:55:52Z</updated>

		<summary type="html">&lt;p&gt;Nishika Patel: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Sandbox_Reserved_Robert_B_Rose_1}}&lt;br /&gt;
&amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Myosin&#039;&#039;&#039; is comprised of 35 different classes of motor proteins, and is universal in all eukaryotic cells.&amp;lt;ref name=&amp;quot;Varkuti&amp;quot;&amp;gt;PMID: 22343723&amp;lt;/ref&amp;gt;  Myosin II is the more well known form of myosin that is involved in muscle contractions; it acts in complex with [[actin]] to create a powerstroke and cause muscular contraction and relaxation.&amp;lt;ref name=&amp;quot;Ruppel&amp;quot;&amp;gt;PMID: 8862525&amp;lt;/ref&amp;gt;  Myosin is the contractile unit of a sarcomere.  Repeating units of sarcomeres make up a myofibril (muscle fiber), and bundles of fibers make up a skeletal muscle. The figure below (right) is a proteolytic fragment of myosin generated by papain digestion in &#039;&#039;Gallus gallus&#039;&#039; (chicken).&lt;br /&gt;
{{STRUCTURE_2mys| PDB=2mys | SCENE= }}&lt;br /&gt;
&lt;br /&gt;
==Structure==&lt;br /&gt;
&lt;br /&gt;
Myosin is a 520 kDa hexamer, or a &#039;&#039;&#039;hexa-oligomer&#039;&#039;&#039; (6 subunit) structure.  It is comprised of two heavy chains (weighing 220 kDa each) and 4 light chains (weighing 20 kDa each).&amp;lt;ref name=&amp;quot;CHEM43&amp;quot;&amp;gt;[http://www.cs.stedwards.edu/chem/Chemistry/CHEM43/CHEM43/Myosin/STRUCT~1.HTM]&amp;lt;/ref&amp;gt;  The 2-D structure below of myosin II shows 7 stranded &amp;lt;scene name=&#039;Sandbox_Reserved_479/2mys_beta_sheet/2&#039;&amp;gt;beta sheet&amp;lt;/scene&amp;gt; (Jmol) and the ATP-binding site between the middle and N-terminal of the protein.  The C-terminal contains the light chains (regulatory domain) and acts as the lever arm to enhance the converter domain&#039;s rotational movements.&amp;lt;ref name=&amp;quot;sampath&amp;quot;&amp;gt;[http://www.sampath.koppole.com/research.htm]&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
[[Image:Mds1.png]]&lt;br /&gt;
&lt;br /&gt;
====Secondary Structure====&lt;br /&gt;
&lt;br /&gt;
The N-terminal comprises a globular head in the heavy chains, and the C-terminal ends with an alpha helix.  The globular head region is also known as S1 (actin-binding site and nucleotide-binding site), and also contains mostly &amp;lt;scene name=&#039;Sandbox_Reserved_479/2mys_alpha_helices/1&#039;&amp;gt;alpha helices&amp;lt;/scene&amp;gt; that are critical to maintaining structure.  The C-terminal end contains interspersed hydrophobic regions that give rise to a &amp;quot;coiled coil&amp;quot; structure.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
====Active Site====&lt;br /&gt;
&lt;br /&gt;
The actin-binding, &amp;lt;scene name=&#039;Sandbox_Reserved_479/2mys_active_site/1&#039;&amp;gt;catalytic site&amp;lt;/scene&amp;gt; of myosin is known as S1 (subfragment 1).  This is the amino-terminal globular head portion of the myosin molecule.  The S1 head is divided into three subdomains: the NH2-terminal 25 kDa region, a central 50 kDa region, and the COOH-terminal 20 kDa region.  Further analysis of the S1 active site of myosin suggests that the γ-phosphate (of ATP) binds near the apex of the 50 kDa cleft.  It is believed to be a region critical to function, because of the presence of evolutionarily conserved residues along the central cleft.&amp;lt;ref name=&amp;quot;Ruppel&amp;quot; /&amp;gt;  The actin-binding site and nucleotide-binding site, although dominated by alpha-helices, also contains a straightened section with two cysteine residues.  The can form a disulfide bond in the presence of a nucleotide that prevents ADP from leaving the active site.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
====X-Ray Crystallography and Scattering====&lt;br /&gt;
&lt;br /&gt;
It was not until recently that crystal structures could be used to analyze myosin and it&#039;s role in the actinomysin chemomechanical cycle.  X-ray diffraction studies have been conducted on whole muscles and muscle fibers to learn how structural changes promote and facilitate motor activity.  Movement of myosin was analyzed under near physiological conditions using modern synchrotron radiation sources.  Structural alterations were created through use of unique time and spatial resolution.  Muscle cells exhibit low scattering power in X-ray images, so a clear crystalline structure cannot not form.  A flat detector is needed because reflections are concentrated in the low angle regions.  Snychrotron radiation generates a monochromatic X-ray breams of diameter 0.2-0.3 mm, similar to that of the muscle fiber, and making high resolution images and video of a single muscle cell possible.&amp;lt;ref name=&amp;quot;Koubassova&amp;quot;&amp;gt;PMID: 22339600&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==Mechanism of Action==&lt;br /&gt;
&lt;br /&gt;
Myosin plays a role in the universal mechanism known as the actinomysin chemomechanical cycle.  Actin binds and releases myosin, causing the myosin lever to interact and relax in a cyclic manner.&amp;lt;ref name=&amp;quot;legacy&amp;quot;&amp;gt;[http://legacy.owensboro.kctcs.edu/gcaplan/anat/notes/api%20notes%20j%20%20muscle%20contraction.htm]&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
[[Image:Image336.png]]&lt;br /&gt;
# Actin and myosin cross bridge enter into the tightly bound rigor complex &lt;br /&gt;
# Working stroke occurs where myosin head pulls actin &lt;br /&gt;
# ATP attaches to myosin head causing it to detach from actin&lt;br /&gt;
# ATP is hydrolyzed into ADP and Pi.  Myosin head prepares for attachment to actin filament again&lt;br /&gt;
&lt;br /&gt;
==Medical Implications and Possible Applications==&lt;br /&gt;
&lt;br /&gt;
The discovery of myosin structure served as a crucial component in understanding the causes of many health related problems.  Dysfunctional myosin mutations have been linked to hypertrophy in the heart.  The power strokes are weaker, making muscle contractions less effective.  The heart enlarges to compensate for inadequate cardiac muscle contractions and consequent poor blood circulation.  Also, blood platelet contractile protein aggregation and secretion is impeded by faulty myosin in patients suffering from idiopathic scoliosis.  A defect in the less-well known myosin VIIA causes Usher 1B syndrome; causing a loss of sight and hearing impairments.  Further research will hopefully give more insight into the unknown causes of other diseases and disorders linked to myosin protein mutations.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==References==&lt;br /&gt;
&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Nishika Patel</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_479&amp;diff=1385423</id>
		<title>Sandbox Reserved 479</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_479&amp;diff=1385423"/>
		<updated>2012-05-02T18:52:46Z</updated>

		<summary type="html">&lt;p&gt;Nishika Patel: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Sandbox_Reserved_Robert_B_Rose_1}}&lt;br /&gt;
&amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Myosin&#039;&#039;&#039; is comprised of 35 different classes of motor proteins, and is universal in all eukaryotic cells.&amp;lt;ref name=&amp;quot;Varkuti&amp;quot;&amp;gt;PMID: 22343723&amp;lt;/ref&amp;gt;  Myosin II is the more well known form of myosin that is involved in muscle contractions; it acts in complex with [[actin]] to create a powerstroke and cause muscular contraction and relaxation.&amp;lt;ref name=&amp;quot;Ruppel&amp;quot;&amp;gt;PMID: 8862525&amp;lt;/ref&amp;gt;  Myosin is the contractile unit of a sarcomere.  Repeating units of sarcomeres make up a myofibril (muscle fiber), and bundles of fibers make up a skeletal muscle. The figure below (right) is a proteolytic fragment of myosin generated by papain digestion in &#039;&#039;Gallus gallus&#039;&#039; (chicken).&lt;br /&gt;
{{STRUCTURE_2mys| PDB=2mys | SCENE= }}&lt;br /&gt;
&lt;br /&gt;
==Structure==&lt;br /&gt;
&lt;br /&gt;
Myosin is a 520 kDa hexamer, or a &#039;&#039;&#039;hexa-oligomer&#039;&#039;&#039; (6 subunit) structure.  It is comprised of two heavy chains (weighing 220 kDa each) and 4 light chains (weighing 20 kDa each).&amp;lt;ref name=&amp;quot;CHEM43&amp;quot;&amp;gt;[http://www.cs.stedwards.edu/chem/Chemistry/CHEM43/CHEM43/Myosin/STRUCT~1.HTM]&amp;lt;/ref&amp;gt;  The 2-D structure below of myosin II shows 7 stranded &amp;lt;scene name=&#039;Sandbox_Reserved_479/2mys_beta_sheet/1&#039;&amp;gt;beta sheet&amp;lt;/scene&amp;gt; (Jmol) and the ATP-binding site between the middle and N-terminal of the protein.  The C-terminal contains the light chains (regulatory domain) and acts as the lever arm to enhance the converter domain&#039;s rotational movements.&amp;lt;ref name=&amp;quot;sampath&amp;quot;&amp;gt;[http://www.sampath.koppole.com/research.htm]&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
[[Image:Mds1.png]]&lt;br /&gt;
&lt;br /&gt;
====Secondary Structure====&lt;br /&gt;
&lt;br /&gt;
The N-terminal comprises a globular head in the heavy chains, and the C-terminal ends with an alpha helix.  The globular head region is also known as S1 (actin-binding site and nucleotide-binding site), and also contains mostly &amp;lt;scene name=&#039;Sandbox_Reserved_479/2mys_alpha_helices/1&#039;&amp;gt;alpha helices&amp;lt;/scene&amp;gt; that are critical to maintaining structure.  The C-terminal end contains interspersed hydrophobic regions that give rise to a &amp;quot;coiled coil&amp;quot; structure.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
====Active Site====&lt;br /&gt;
&lt;br /&gt;
The actin-binding, &amp;lt;scene name=&#039;Sandbox_Reserved_479/2mys_active_site/1&#039;&amp;gt;catalytic site&amp;lt;/scene&amp;gt; of myosin is known as S1 (subfragment 1).  This is the amino-terminal globular head portion of the myosin molecule.  The S1 head is divided into three subdomains: the NH2-terminal 25 kDa region, a central 50 kDa region, and the COOH-terminal 20 kDa region.  Further analysis of the S1 active site of myosin suggests that the γ-phosphate (of ATP) binds near the apex of the 50 kDa cleft.  It is believed to be a region critical to function, because of the presence of evolutionarily conserved residues along the central cleft.&amp;lt;ref name=&amp;quot;Ruppel&amp;quot; /&amp;gt;  The actin-binding site and nucleotide-binding site, although dominated by alpha-helices, also contains a straightened section with two cysteine residues.  The can form a disulfide bond in the presence of a nucleotide that prevents ADP from leaving the active site.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
====X-Ray Crystallography and Scattering====&lt;br /&gt;
&lt;br /&gt;
It was not until recently that crystal structures could be used to analyze myosin and it&#039;s role in the actinomysin chemomechanical cycle.  X-ray diffraction studies have been conducted on whole muscles and muscle fibers to learn how structural changes promote and facilitate motor activity.  Movement of myosin was analyzed under near physiological conditions using modern synchrotron radiation sources.  Structural alterations were created through use of unique time and spatial resolution.  Muscle cells exhibit low scattering power in X-ray images, so a clear crystalline structure cannot not form.  A flat detector is needed because reflections are concentrated in the low angle regions.  Snychrotron radiation generates a monochromatic X-ray breams of diameter 0.2-0.3 mm, similar to that of the muscle fiber, and making high resolution images and video of a single muscle cell possible.&amp;lt;ref name=&amp;quot;Koubassova&amp;quot;&amp;gt;PMID: 22339600&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==Mechanism of Action==&lt;br /&gt;
&lt;br /&gt;
Myosin plays a role in the universal mechanism known as the actinomysin chemomechanical cycle.  Actin binds and releases myosin, causing the myosin lever to interact and relax in a cyclic manner.&amp;lt;ref name=&amp;quot;legacy&amp;quot;&amp;gt;[http://legacy.owensboro.kctcs.edu/gcaplan/anat/notes/api%20notes%20j%20%20muscle%20contraction.htm]&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
[[Image:Image336.png]]&lt;br /&gt;
# Actin and myosin cross bridge enter into the tightly bound rigor complex &lt;br /&gt;
# Working stroke occurs where myosin head pulls actin &lt;br /&gt;
# ATP attaches to myosin head causing it to detach from actin&lt;br /&gt;
# ATP is hydrolyzed into ADP and Pi.  Myosin head prepares for attachment to actin filament again&lt;br /&gt;
&lt;br /&gt;
==Medical Implications and Possible Applications==&lt;br /&gt;
&lt;br /&gt;
The discovery of myosin structure served as a crucial component in understanding the causes of many health related problems.  Dysfunctional myosin mutations have been linked to hypertrophy in the heart.  The power strokes are weaker, making muscle contractions less effective.  The heart enlarges to compensate for inadequate cardiac muscle contractions and consequent poor blood circulation.  Also, blood platelet contractile protein aggregation and secretion is impeded by faulty myosin in patients suffering from idiopathic scoliosis.  A defect in the less-well known myosin VIIA causes Usher 1B syndrome; causing a loss of sight and hearing impairments.  Further research will hopefully give more insight into the unknown causes of other diseases and disorders linked to myosin protein mutations.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==References==&lt;br /&gt;
&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Nishika Patel</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_479&amp;diff=1385390</id>
		<title>Sandbox Reserved 479</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_479&amp;diff=1385390"/>
		<updated>2012-05-02T18:50:32Z</updated>

		<summary type="html">&lt;p&gt;Nishika Patel: /* Mechanism of Action */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Sandbox_Reserved_Robert_B_Rose_1}}&lt;br /&gt;
&amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Myosin&#039;&#039;&#039; is comprised of 35 different classes of motor proteins, and is universal in all eukaryotic cells.&amp;lt;ref name=&amp;quot;Varkuti&amp;quot;&amp;gt;PMID: 22343723&amp;lt;/ref&amp;gt;  Myosin II is the more well known form of myosin that is involved in muscle contractions; it acts in complex with [[actin]] to create a powerstroke and cause muscular contraction and relaxation.&amp;lt;ref name=&lt;br /&gt;
&amp;quot;Ruppel&amp;quot;&amp;gt;PMID: 8862525&amp;lt;/ref&amp;gt;  Myosin is the contractile unit of a sarcomere.  Repeating units of sarcomeres make up a myofibril (muscle fiber), and bundles of fibers make up a skeletal muscle. The figure below (right) is a proteolytic fragment of myosin generated by papain digestion in &#039;&#039;Gallus gallus&#039;&#039; (chicken) bound to ligands &amp;lt;scene name=&#039;Sandbox_Reserved_479/2_mys_magnesium_ligand/2&#039;&amp;gt;magnesium&amp;lt;/scene&amp;gt; and &amp;lt;scene name=&#039;Sandbox_Reserved_479/2_mys_sulfate_ion/1&#039;&amp;gt;sulfate ion&amp;lt;/scene&amp;gt;.&lt;br /&gt;
{{STRUCTURE_2mys| PDB=2mys | SCENE= }}&lt;br /&gt;
&lt;br /&gt;
==Structure==&lt;br /&gt;
&lt;br /&gt;
Myosin is a 520 kDa hexamer, or a &#039;&#039;&#039;hexa-oligomer&#039;&#039;&#039; (6 subunit) structure.  It is comprised of two heavy chains (weighing 220 kDa each) and 4 light chains (weighing 20 kDa each).&amp;lt;ref name=&amp;quot;CHEM43&amp;quot;&amp;gt;[http://www.cs.stedwards.edu/chem/Chemistry/CHEM43/CHEM43/Myosin/STRUCT~1.HTM]&amp;lt;/ref&amp;gt;  The 2-D structure below of myosin II shows 7 stranded &amp;lt;scene name=&#039;Sandbox_Reserved_479/2mys_beta_sheet/1&#039;&amp;gt;beta sheet&amp;lt;/scene&amp;gt; (Jmol) and the ATP-binding site between the middle and N-terminal of the protein.  The C-terminal contains the light chains (regulatory domain) and acts as the lever arm to enhance the converter domain&#039;s rotational movements.&amp;lt;ref name=&amp;quot;sampath&amp;quot;&amp;gt;[http://www.sampath.koppole.com/research.htm]&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
[[Image:Mds1.png]]&lt;br /&gt;
&lt;br /&gt;
====Secondary Structure====&lt;br /&gt;
&lt;br /&gt;
The N-terminal comprises a globular head in the heavy chains, and the C-terminal ends with an alpha helix.  The globular head region is also known as S1 (actin-binding site and nucleotide-binding site), and also contains mostly &amp;lt;scene name=&#039;Sandbox_Reserved_479/2mys_alpha_helices/1&#039;&amp;gt;alpha helices&amp;lt;/scene&amp;gt; that are critical to maintaining structure.  The C-terminal end contains interspersed hydrophobic regions that give rise to a &amp;quot;coiled coil&amp;quot; structure.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
====Active Site====&lt;br /&gt;
&lt;br /&gt;
The actin-binding, &amp;lt;scene name=&#039;Sandbox_Reserved_479/2mys_active_site/1&#039;&amp;gt;catalytic site&amp;lt;/scene&amp;gt; of myosin is known as S1 (subfragment 1).  This is the amino-terminal globular head portion of the myosin molecule.  The S1 head is divided into three subdomains: the NH2-terminal 25 kDa region, a central 50 kDa region, and the COOH-terminal 20 kDa region.  Further analysis of the S1 active site of myosin suggests that the γ-phosphate (of ATP) binds near the apex of the 50 kDa cleft.  It is believed to be a region critical to function, because of the presence of evolutionarily conserved residues along the central cleft.&amp;lt;ref name=&amp;quot;Ruppel&amp;quot; /&amp;gt;  The actin-binding site and nucleotide-binding site, although dominated by alpha-helices, also contains a straightened section with two cysteine residues.  The can form a disulfide bond in the presence of a nucleotide that prevents ADP from leaving the active site.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
====X-Ray Crystallography and Scattering====&lt;br /&gt;
&lt;br /&gt;
It was not until recently that crystal structures could be used to analyze myosin and it&#039;s role in the actinomysin chemomechanical cycle.  X-ray diffraction studies have been conducted on whole muscles and muscle fibers to learn how structural changes promote and facilitate motor activity.  Movement of myosin was analyzed under near physiological conditions using modern synchrotron radiation sources.  Structural alterations were created through use of unique time and spatial resolution.  Muscle cells exhibit low scattering power in X-ray images, so a clear crystalline structure cannot not form.  A flat detector is needed because reflections are concentrated in the low angle regions.  Snychrotron radiation generates a monochromatic X-ray breams of diameter 0.2-0.3 mm, similar to that of the muscle fiber, and making high resolution images and video of a single muscle cell possible.&amp;lt;ref name=&amp;quot;Koubassova&amp;quot;&amp;gt;PMID: 22339600&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==Mechanism of Action==&lt;br /&gt;
&lt;br /&gt;
Myosin plays a role in the universal mechanism known as the actinomysin chemomechanical cycle.  Actin binds and releases myosin, causing the myosin lever to interact and relax in a cyclic manner.&amp;lt;ref name=&amp;quot;legacy&amp;quot;&amp;gt;[http://legacy.owensboro.kctcs.edu/gcaplan/anat/notes/api%20notes%20j%20%20muscle%20contraction.htm]&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
[[Image:Image336.png]]&lt;br /&gt;
# Actin and myosin cross bridge enter into the tightly bound rigor complex &lt;br /&gt;
# Working stroke occurs where myosin head pulls actin &lt;br /&gt;
# ATP attaches to myosin head causing it to detach from actin&lt;br /&gt;
# ATP is hydrolyzed into ADP and Pi.  Myosin head prepares for attachment to actin filament again&lt;br /&gt;
&lt;br /&gt;
==Medical Implications and Possible Applications==&lt;br /&gt;
&lt;br /&gt;
The discovery of myosin structure served as a crucial component in understanding the causes of many health related problems.  Dysfunctional myosin mutations have been linked to hypertrophy in the heart.  The power strokes are weaker, making muscle contractions less effective.  The heart enlarges to compensate for inadequate cardiac muscle contractions and consequent poor blood circulation.  Also, blood platelet contractile protein aggregation and secretion is impeded by faulty myosin in patients suffering from idiopathic scoliosis.  A defect in the less-well known myosin VIIA causes Usher 1B syndrome; causing a loss of sight and hearing impairments.  Further research will hopefully give more insight into the unknown causes of other diseases and disorders linked to myosin protein mutations.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==References==&lt;br /&gt;
&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Nishika Patel</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_479&amp;diff=1385248</id>
		<title>Sandbox Reserved 479</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_479&amp;diff=1385248"/>
		<updated>2012-05-02T18:45:04Z</updated>

		<summary type="html">&lt;p&gt;Nishika Patel: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Sandbox_Reserved_Robert_B_Rose_1}}&lt;br /&gt;
&amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Myosin&#039;&#039;&#039; is comprised of 35 different classes of motor proteins, and is universal in all eukaryotic cells.&amp;lt;ref name=&amp;quot;Varkuti&amp;quot;&amp;gt;PMID: 22343723&amp;lt;/ref&amp;gt;  Myosin II is the more well known form of myosin that is involved in muscle contractions; it acts in complex with [[actin]] to create a powerstroke and cause muscular contraction and relaxation.&amp;lt;ref name=&lt;br /&gt;
&amp;quot;Ruppel&amp;quot;&amp;gt;PMID: 8862525&amp;lt;/ref&amp;gt;  Myosin is the contractile unit of a sarcomere.  Repeating units of sarcomeres make up a myofibril (muscle fiber), and bundles of fibers make up a skeletal muscle. The figure below (right) is a proteolytic fragment of myosin generated by papain digestion in &#039;&#039;Gallus gallus&#039;&#039; (chicken) bound to ligands &amp;lt;scene name=&#039;Sandbox_Reserved_479/2_mys_magnesium_ligand/2&#039;&amp;gt;magnesium&amp;lt;/scene&amp;gt; and &amp;lt;scene name=&#039;Sandbox_Reserved_479/2_mys_sulfate_ion/1&#039;&amp;gt;sulfate ion&amp;lt;/scene&amp;gt;.&lt;br /&gt;
{{STRUCTURE_2mys| PDB=2mys | SCENE= }}&lt;br /&gt;
&lt;br /&gt;
==Structure==&lt;br /&gt;
&lt;br /&gt;
Myosin is a 520 kDa hexamer, or a &#039;&#039;&#039;hexa-oligomer&#039;&#039;&#039; (6 subunit) structure.  It is comprised of two heavy chains (weighing 220 kDa each) and 4 light chains (weighing 20 kDa each).&amp;lt;ref name=&amp;quot;CHEM43&amp;quot;&amp;gt;[http://www.cs.stedwards.edu/chem/Chemistry/CHEM43/CHEM43/Myosin/STRUCT~1.HTM]&amp;lt;/ref&amp;gt;  The 2-D structure below of myosin II shows 7 stranded &amp;lt;scene name=&#039;Sandbox_Reserved_479/2mys_beta_sheet/1&#039;&amp;gt;beta sheet&amp;lt;/scene&amp;gt; (Jmol) and the ATP-binding site between the middle and N-terminal of the protein.  The C-terminal contains the light chains (regulatory domain) and acts as the lever arm to enhance the converter domain&#039;s rotational movements.&amp;lt;ref name=&amp;quot;sampath&amp;quot;&amp;gt;[http://www.sampath.koppole.com/research.htm]&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
[[Image:Mds1.png]]&lt;br /&gt;
&lt;br /&gt;
====Secondary Structure====&lt;br /&gt;
&lt;br /&gt;
The N-terminal comprises a globular head in the heavy chains, and the C-terminal ends with an alpha helix.  The globular head region is also known as S1 (actin-binding site and nucleotide-binding site), and also contains mostly &amp;lt;scene name=&#039;Sandbox_Reserved_479/2mys_alpha_helices/1&#039;&amp;gt;alpha helices&amp;lt;/scene&amp;gt; that are critical to maintaining structure.  The C-terminal end contains interspersed hydrophobic regions that give rise to a &amp;quot;coiled coil&amp;quot; structure.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
====Active Site====&lt;br /&gt;
&lt;br /&gt;
The actin-binding, &amp;lt;scene name=&#039;Sandbox_Reserved_479/2mys_active_site/1&#039;&amp;gt;catalytic site&amp;lt;/scene&amp;gt; of myosin is known as S1 (subfragment 1).  This is the amino-terminal globular head portion of the myosin molecule.  The S1 head is divided into three subdomains: the NH2-terminal 25 kDa region, a central 50 kDa region, and the COOH-terminal 20 kDa region.  Further analysis of the S1 active site of myosin suggests that the γ-phosphate (of ATP) binds near the apex of the 50 kDa cleft.  It is believed to be a region critical to function, because of the presence of evolutionarily conserved residues along the central cleft.&amp;lt;ref name=&amp;quot;Ruppel&amp;quot; /&amp;gt;  The actin-binding site and nucleotide-binding site, although dominated by alpha-helices, also contains a straightened section with two cysteine residues.  The can form a disulfide bond in the presence of a nucleotide that prevents ADP from leaving the active site.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
====X-Ray Crystallography and Scattering====&lt;br /&gt;
&lt;br /&gt;
It was not until recently that crystal structures could be used to analyze myosin and it&#039;s role in the actinomysin chemomechanical cycle.  X-ray diffraction studies have been conducted on whole muscles and muscle fibers to learn how structural changes promote and facilitate motor activity.  Movement of myosin was analyzed under near physiological conditions using modern synchrotron radiation sources.  Structural alterations were created through use of unique time and spatial resolution.  Muscle cells exhibit low scattering power in X-ray images, so a clear crystalline structure cannot not form.  A flat detector is needed because reflections are concentrated in the low angle regions.  Snychrotron radiation generates a monochromatic X-ray breams of diameter 0.2-0.3 mm, similar to that of the muscle fiber, and making high resolution images and video of a single muscle cell possible.&amp;lt;ref name=&amp;quot;Koubassova&amp;quot;&amp;gt;PMID: 22339600&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==Mechanism of Action==&lt;br /&gt;
&lt;br /&gt;
Myosin plays a role in the universal mechanism known as the actinomysin chemomechanical cycle.  Actin binds and releases myosin, causing the myosin lever to interact and relax in a cyclic manner.&amp;lt;ref name=&amp;quot;legacy&amp;quot;&amp;gt;[http://legacy.owensboro.kctcs.edu/gcaplan/anat/notes/api%20notes%20j%20%20muscle%20contraction.htm]&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[Image:Image336.png]]&lt;br /&gt;
# ATP binds to S1 causing Actin to disassociate out of it&#039;s rigor complex (between actin and the S1 catalytic site on myosin)&lt;br /&gt;
# S1 causes the hydolysis of ATP to ADP and Pi&lt;br /&gt;
# Actin interacts with the S1-ADP-Pi complex and Pi is released&lt;br /&gt;
# S1 catalytic site&#039;s affinity for actin increases and the Actin-S1-ADP forms&lt;br /&gt;
# ADP is released, causing actin and myosin to again enter into the tightly bound rigor complex&amp;lt;ref name=&amp;quot;Ruppel&amp;quot; /&amp;gt;&amp;lt;ref name=&amp;quot;Koubassova&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==Medical Implications and Possible Applications==&lt;br /&gt;
&lt;br /&gt;
The discovery of myosin structure served as a crucial component in understanding the causes of many health related problems.  Dysfunctional myosin mutations have been linked to hypertrophy in the heart.  The power strokes are weaker, making muscle contractions less effective.  The heart enlarges to compensate for inadequate cardiac muscle contractions and consequent poor blood circulation.  Also, blood platelet contractile protein aggregation and secretion is impeded by faulty myosin in patients suffering from idiopathic scoliosis.  A defect in the less-well known myosin VIIA causes Usher 1B syndrome; causing a loss of sight and hearing impairments.  Further research will hopefully give more insight into the unknown causes of other diseases and disorders linked to myosin protein mutations.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==References==&lt;br /&gt;
&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Nishika Patel</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=File:Image336.png&amp;diff=1385239</id>
		<title>File:Image336.png</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=File:Image336.png&amp;diff=1385239"/>
		<updated>2012-05-02T18:44:22Z</updated>

		<summary type="html">&lt;p&gt;Nishika Patel: muscle contractions, sited on page&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;muscle contractions, sited on page&lt;/div&gt;</summary>
		<author><name>Nishika Patel</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_479&amp;diff=1385233</id>
		<title>Sandbox Reserved 479</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_479&amp;diff=1385233"/>
		<updated>2012-05-02T18:43:45Z</updated>

		<summary type="html">&lt;p&gt;Nishika Patel: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Sandbox_Reserved_Robert_B_Rose_1}}&lt;br /&gt;
&amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Myosin&#039;&#039;&#039; is comprised of 35 different classes of motor proteins, and is universal in all eukaryotic cells.&amp;lt;ref name=&amp;quot;Varkuti&amp;quot;&amp;gt;PMID: 22343723&amp;lt;/ref&amp;gt;  Myosin II is the more well known form of myosin that is involved in muscle contractions; it acts in complex with [[actin]] to create a powerstroke and cause muscular contraction and relaxation.&amp;lt;ref name=&lt;br /&gt;
&amp;quot;Ruppel&amp;quot;&amp;gt;PMID: 8862525&amp;lt;/ref&amp;gt;  Myosin is the contractile unit of a sarcomere.  Repeating units of sarcomeres make up a myofibril (muscle fiber), and bundles of fibers make up a skeletal muscle. The figure below (right) is a proteolytic fragment of myosin generated by papain digestion in &#039;&#039;Gallus gallus&#039;&#039; (chicken) bound to ligands &amp;lt;scene name=&#039;Sandbox_Reserved_479/2_mys_magnesium_ligand/2&#039;&amp;gt;magnesium&amp;lt;/scene&amp;gt; and &amp;lt;scene name=&#039;Sandbox_Reserved_479/2_mys_sulfate_ion/1&#039;&amp;gt;sulfate ion&amp;lt;/scene&amp;gt;.&lt;br /&gt;
{{STRUCTURE_2mys| PDB=2mys | SCENE= }}&lt;br /&gt;
&lt;br /&gt;
==Structure==&lt;br /&gt;
&lt;br /&gt;
Myosin is a 520 kDa hexamer, or a &#039;&#039;&#039;hexa-oligomer&#039;&#039;&#039; (6 subunit) structure.  It is comprised of two heavy chains (weighing 220 kDa each) and 4 light chains (weighing 20 kDa each).&amp;lt;ref name=&amp;quot;CHEM43&amp;quot;&amp;gt;[http://www.cs.stedwards.edu/chem/Chemistry/CHEM43/CHEM43/Myosin/STRUCT~1.HTM]&amp;lt;/ref&amp;gt;  The 2-D structure below of myosin II shows 7 stranded &amp;lt;scene name=&#039;Sandbox_Reserved_479/2mys_beta_sheet/1&#039;&amp;gt;beta sheet&amp;lt;/scene&amp;gt; (Jmol) and the ATP-binding site between the middle and N-terminal of the protein.  The C-terminal contains the light chains (regulatory domain) and acts as the lever arm to enhance the converter domain&#039;s rotational movements.&amp;lt;ref name=&amp;quot;sampath&amp;quot;&amp;gt;[http://www.sampath.koppole.com/research.htm]&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
[[Image:Mds1.png]]&lt;br /&gt;
&lt;br /&gt;
====Secondary Structure====&lt;br /&gt;
&lt;br /&gt;
The N-terminal comprises a globular head in the heavy chains, and the C-terminal ends with an alpha helix.  The globular head region is also known as S1 (actin-binding site and nucleotide-binding site), and also contains mostly &amp;lt;scene name=&#039;Sandbox_Reserved_479/2mys_alpha_helices/1&#039;&amp;gt;alpha helices&amp;lt;/scene&amp;gt; that are critical to maintaining structure.  The C-terminal end contains interspersed hydrophobic regions that give rise to a &amp;quot;coiled coil&amp;quot; structure.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
====Active Site====&lt;br /&gt;
&lt;br /&gt;
The actin-binding, &amp;lt;scene name=&#039;Sandbox_Reserved_479/2mys_active_site/1&#039;&amp;gt;catalytic site&amp;lt;/scene&amp;gt; of myosin is known as S1 (subfragment 1).  This is the amino-terminal globular head portion of the myosin molecule.  The S1 head is divided into three subdomains: the NH2-terminal 25 kDa region, a central 50 kDa region, and the COOH-terminal 20 kDa region.  Further analysis of the S1 active site of myosin suggests that the γ-phosphate (of ATP) binds near the apex of the 50 kDa cleft.  It is believed to be a region critical to function, because of the presence of evolutionarily conserved residues along the central cleft.&amp;lt;ref name=&amp;quot;Ruppel&amp;quot; /&amp;gt;  The actin-binding site and nucleotide-binding site, although dominated by alpha-helices, also contains a straightened section with two cysteine residues.  The can form a disulfide bond in the presence of a nucleotide that prevents ADP from leaving the active site.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
====X-Ray Crystallography and Scattering====&lt;br /&gt;
&lt;br /&gt;
It was not until recently that crystal structures could be used to analyze myosin and it&#039;s role in the actinomysin chemomechanical cycle.  X-ray diffraction studies have been conducted on whole muscles and muscle fibers to learn how structural changes promote and facilitate motor activity.  Movement of myosin was analyzed under near physiological conditions using modern synchrotron radiation sources.  Structural alterations were created through use of unique time and spatial resolution.  Muscle cells exhibit low scattering power in X-ray images, so a clear crystalline structure cannot not form.  A flat detector is needed because reflections are concentrated in the low angle regions.  Snychrotron radiation generates a monochromatic X-ray breams of diameter 0.2-0.3 mm, similar to that of the muscle fiber, and making high resolution images and video of a single muscle cell possible.&amp;lt;ref name=&amp;quot;Koubassova&amp;quot;&amp;gt;PMID: 22339600&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==Mechanism of Action==&lt;br /&gt;
&lt;br /&gt;
Myosin plays a role in the universal mechanism known as the actinomysin chemomechanical cycle.  Actin binds and releases myosin, causing the myosin lever to interact and relax in a cyclic manner.&amp;lt;ref name=&amp;quot;legacy&amp;quot;&amp;gt;[http://legacy.owensboro.kctcs.edu/gcaplan/anat/notes/api%20notes%20j%20%20muscle%20contraction.htm]&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[Image:picture 1.png]]&lt;br /&gt;
# ATP binds to S1 causing Actin to disassociate out of it&#039;s rigor complex (between actin and the S1 catalytic site on myosin)&lt;br /&gt;
# S1 causes the hydolysis of ATP to ADP and Pi&lt;br /&gt;
# Actin interacts with the S1-ADP-Pi complex and Pi is released&lt;br /&gt;
# S1 catalytic site&#039;s affinity for actin increases and the Actin-S1-ADP forms&lt;br /&gt;
# ADP is released, causing actin and myosin to again enter into the tightly bound rigor complex&amp;lt;ref name=&amp;quot;Ruppel&amp;quot; /&amp;gt;&amp;lt;ref name=&amp;quot;Koubassova&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==Medical Implications and Possible Applications==&lt;br /&gt;
&lt;br /&gt;
The discovery of myosin structure served as a crucial component in understanding the causes of many health related problems.  Dysfunctional myosin mutations have been linked to hypertrophy in the heart.  The power strokes are weaker, making muscle contractions less effective.  The heart enlarges to compensate for inadequate cardiac muscle contractions and consequent poor blood circulation.  Also, blood platelet contractile protein aggregation and secretion is impeded by faulty myosin in patients suffering from idiopathic scoliosis.  A defect in the less-well known myosin VIIA causes Usher 1B syndrome; causing a loss of sight and hearing impairments.  Further research will hopefully give more insight into the unknown causes of other diseases and disorders linked to myosin protein mutations.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==References==&lt;br /&gt;
&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Nishika Patel</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_479&amp;diff=1385104</id>
		<title>Sandbox Reserved 479</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_479&amp;diff=1385104"/>
		<updated>2012-05-02T18:34:43Z</updated>

		<summary type="html">&lt;p&gt;Nishika Patel: /* Structure */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Sandbox_Reserved_Robert_B_Rose_1}}&lt;br /&gt;
&amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Myosin&#039;&#039;&#039; is comprised of 35 different classes of motor proteins, and is universal in all eukaryotic cells.&amp;lt;ref name=&amp;quot;Varkuti&amp;quot;&amp;gt;PMID: 22343723&amp;lt;/ref&amp;gt;  Myosin II is the more well known form of myosin that is involved in muscle contractions; it acts in complex with [[actin]] to create a powerstroke and cause muscular contraction and relaxation.&amp;lt;ref name=&lt;br /&gt;
&amp;quot;Ruppel&amp;quot;&amp;gt;PMID: 8862525&amp;lt;/ref&amp;gt;  Myosin is the contractile unit of a sarcomere.  Repeating units of sarcomeres make up a myofibril (muscle fiber), and bundles of fibers make up a skeletal muscle. The figure below (right) is a proteolytic fragment of myosin generated by papain digestion in &#039;&#039;Gallus gallus&#039;&#039; (chicken) bound to ligands &amp;lt;scene name=&#039;Sandbox_Reserved_479/2_mys_magnesium_ligand/2&#039;&amp;gt;magnesium&amp;lt;/scene&amp;gt; and &amp;lt;scene name=&#039;Sandbox_Reserved_479/2_mys_sulfate_ion/1&#039;&amp;gt;sulfate ion&amp;lt;/scene&amp;gt;.&lt;br /&gt;
{{STRUCTURE_2mys| PDB=2mys | SCENE= }}&lt;br /&gt;
&lt;br /&gt;
==Structure==&lt;br /&gt;
&lt;br /&gt;
Myosin is a 520 kDa hexamer, or a &#039;&#039;&#039;hexa-oligomer&#039;&#039;&#039; (6 subunit) structure.  It is comprised of two heavy chains (weighing 220 kDa each) and 4 light chains (weighing 20 kDa each).&amp;lt;ref name=&amp;quot;CHEM43&amp;quot;&amp;gt;[http://www.cs.stedwards.edu/chem/Chemistry/CHEM43/CHEM43/Myosin/STRUCT~1.HTM]&amp;lt;/ref&amp;gt;  The 2-D structure below of myosin II shows 7 stranded &amp;lt;scene name=&#039;Sandbox_Reserved_479/2mys_beta_sheet/1&#039;&amp;gt;beta sheet&amp;lt;/scene&amp;gt; (Jmol) and the ATP-binding site between the middle and N-terminal of the protein.  The C-terminal contains the light chains (regulatory domain) and acts as the lever arm to enhance the converter domain&#039;s rotational movements.&amp;lt;ref name=&amp;quot;sampath&amp;quot;&amp;gt;[http://www.sampath.koppole.com/research.htm]&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
[[Image:Mds1.png]]&lt;br /&gt;
&lt;br /&gt;
====Secondary Structure====&lt;br /&gt;
&lt;br /&gt;
The N-terminal comprises a globular head in the heavy chains, and the C-terminal ends with an alpha helix.  The globular head region is also known as S1 (actin-binding site and nucleotide-binding site), and also contains mostly &amp;lt;scene name=&#039;Sandbox_Reserved_479/2mys_alpha_helices/1&#039;&amp;gt;alpha helices&amp;lt;/scene&amp;gt; that are critical to maintaining structure.  The C-terminal end contains interspersed hydrophobic regions that give rise to a &amp;quot;coiled coil&amp;quot; structure.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
====Active Site====&lt;br /&gt;
&lt;br /&gt;
The actin-binding, &amp;lt;scene name=&#039;Sandbox_Reserved_479/2mys_active_site/1&#039;&amp;gt;catalytic site&amp;lt;/scene&amp;gt; of myosin is known as S1 (subfragment 1).  This is the amino-terminal globular head portion of the myosin molecule.  The S1 head is divided into three subdomains: the NH2-terminal 25 kDa region, a central 50 kDa region, and the COOH-terminal 20 kDa region.  Further analysis of the S1 active site of myosin suggests that the γ-phosphate (of ATP) binds near the apex of the 50 kDa cleft.  It is believed to be a region critical to function, because of the presence of evolutionarily conserved residues along the central cleft.&amp;lt;ref name=&amp;quot;Ruppel&amp;quot; /&amp;gt;  The actin-binding site and nucleotide-binding site, although dominated by alpha-helices, also contains a straightened section with two cysteine residues.  The can form a disulfide bond in the presence of a nucleotide that prevents ADP from leaving the active site.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
====X-Ray Crystallography and Scattering====&lt;br /&gt;
&lt;br /&gt;
It was not until recently that crystal structures could be used to analyze myosin and it&#039;s role in the actinomysin chemomechanical cycle.  X-ray diffraction studies have been conducted on whole muscles and muscle fibers to learn how structural changes promote and facilitate motor activity.  Movement of myosin was analyzed under near physiological conditions using modern synchrotron radiation sources.  Structural alterations were created through use of unique time and spatial resolution.  Muscle cells exhibit low scattering power in X-ray images, so a clear crystalline structure cannot not form.  A flat detector is needed because reflections are concentrated in the low angle regions.  Snychrotron radiation generates a monochromatic X-ray breams of diameter 0.2-0.3 mm, similar to that of the muscle fiber, and making high resolution images and video of a single muscle cell possible.&amp;lt;ref name=&amp;quot;Koubassova&amp;quot;&amp;gt;PMID: 22339600&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==Mechanism of Action==&lt;br /&gt;
&lt;br /&gt;
Myosin plays a role in the universal mechanism known as the actinomysin chemomechanical cycle.  Actin binds and releases myosin, causing the myosin lever to interact and relax in a cyclic manner.&amp;lt;ref name=&amp;quot;Varkuti&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
[[Image:picture 1.png]]&lt;br /&gt;
# ATP binds to S1 causing Actin to disassociate out of it&#039;s rigor complex (between actin and the S1 catalytic site on myosin)&lt;br /&gt;
# S1 causes the hydolysis of ATP to ADP and Pi&lt;br /&gt;
# Actin interacts with the S1-ADP-Pi complex and Pi is released&lt;br /&gt;
# S1 catalytic site&#039;s affinity for actin increases and the Actin-S1-ADP forms&lt;br /&gt;
# ADP is released, causing actin and myosin to again enter into the tightly bound rigor complex&amp;lt;ref name=&amp;quot;Ruppel&amp;quot; /&amp;gt;&amp;lt;ref name=&amp;quot;Koubassova&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==Medical Implications and Possible Applications==&lt;br /&gt;
&lt;br /&gt;
The discovery of myosin structure served as a crucial component in understanding the causes of many health related problems.  Dysfunctional myosin mutations have been linked to hypertrophy in the heart.  The power strokes are weaker, making muscle contractions less effective.  The heart enlarges to compensate for inadequate cardiac muscle contractions and consequent poor blood circulation.  Also, blood platelet contractile protein aggregation and secretion is impeded by faulty myosin in patients suffering from idiopathic scoliosis.  A defect in the less-well known myosin VIIA causes Usher 1B syndrome; causing a loss of sight and hearing impairments.  Further research will hopefully give more insight into the unknown causes of other diseases and disorders linked to myosin protein mutations.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==References==&lt;br /&gt;
&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Nishika Patel</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_479&amp;diff=1385089</id>
		<title>Sandbox Reserved 479</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_479&amp;diff=1385089"/>
		<updated>2012-05-02T18:33:41Z</updated>

		<summary type="html">&lt;p&gt;Nishika Patel: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Sandbox_Reserved_Robert_B_Rose_1}}&lt;br /&gt;
&amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Myosin&#039;&#039;&#039; is comprised of 35 different classes of motor proteins, and is universal in all eukaryotic cells.&amp;lt;ref name=&amp;quot;Varkuti&amp;quot;&amp;gt;PMID: 22343723&amp;lt;/ref&amp;gt;  Myosin II is the more well known form of myosin that is involved in muscle contractions; it acts in complex with [[actin]] to create a powerstroke and cause muscular contraction and relaxation.&amp;lt;ref name=&lt;br /&gt;
&amp;quot;Ruppel&amp;quot;&amp;gt;PMID: 8862525&amp;lt;/ref&amp;gt;  Myosin is the contractile unit of a sarcomere.  Repeating units of sarcomeres make up a myofibril (muscle fiber), and bundles of fibers make up a skeletal muscle. The figure below (right) is a proteolytic fragment of myosin generated by papain digestion in &#039;&#039;Gallus gallus&#039;&#039; (chicken) bound to ligands &amp;lt;scene name=&#039;Sandbox_Reserved_479/2_mys_magnesium_ligand/2&#039;&amp;gt;magnesium&amp;lt;/scene&amp;gt; and &amp;lt;scene name=&#039;Sandbox_Reserved_479/2_mys_sulfate_ion/1&#039;&amp;gt;sulfate ion&amp;lt;/scene&amp;gt;.&lt;br /&gt;
{{STRUCTURE_2mys| PDB=2mys | SCENE= }}&lt;br /&gt;
&lt;br /&gt;
==Structure==&lt;br /&gt;
&lt;br /&gt;
Myosin is a 520 kDa hexamer, or a &#039;&#039;&#039;hexa-oligomer&#039;&#039;&#039; (6 subunit) structure.  It is comprised of two heavy chains (weighing 220 kDa each) and 4 light chains (weighing 20 kDa each).&amp;lt;ref name=&amp;quot;CHEM43&amp;quot;&amp;gt;[http://www.cs.stedwards.edu/chem/Chemistry/CHEM43/CHEM43/Myosin/STRUCT~1.HTM]&amp;lt;/ref&amp;gt;  The 2-D structure below of myosin II shows 7 stranded &amp;lt;scene name=&#039;Sandbox_Reserved_479/2mys_beta_sheet/1&#039;&amp;gt;beta sheet&amp;lt;/scene&amp;gt;(jmol) and the ATP-binding site between the middle and N-terminal of the protein.  The C-terminal contains the light chains (regulatory domain) and acts as the lever arm to enhance the converter domain&#039;s rotational movements.&amp;lt;ref name=&amp;quot;sampath&amp;quot;&amp;gt;[http://www.sampath.koppole.com/research.htm]&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
[[Image:Mds1.png]]&lt;br /&gt;
&lt;br /&gt;
====Secondary Structure====&lt;br /&gt;
&lt;br /&gt;
The N-terminal comprises a globular head in the heavy chains, and the C-terminal ends with an alpha helix.  The globular head region is also known as S1 (actin-binding site and nucleotide-binding site), and also contains mostly &amp;lt;scene name=&#039;Sandbox_Reserved_479/2mys_alpha_helices/1&#039;&amp;gt;alpha helices&amp;lt;/scene&amp;gt; that are critical to maintaining structure.  The C-terminal end contains interspersed hydrophobic regions that give rise to a &amp;quot;coiled coil&amp;quot; structure.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
====Active Site====&lt;br /&gt;
&lt;br /&gt;
The actin-binding, &amp;lt;scene name=&#039;Sandbox_Reserved_479/2mys_active_site/1&#039;&amp;gt;catalytic site&amp;lt;/scene&amp;gt; of myosin is known as S1 (subfragment 1).  This is the amino-terminal globular head portion of the myosin molecule.  The S1 head is divided into three subdomains: the NH2-terminal 25 kDa region, a central 50 kDa region, and the COOH-terminal 20 kDa region.  Further analysis of the S1 active site of myosin suggests that the γ-phosphate (of ATP) binds near the apex of the 50 kDa cleft.  It is believed to be a region critical to function, because of the presence of evolutionarily conserved residues along the central cleft.&amp;lt;ref name=&amp;quot;Ruppel&amp;quot; /&amp;gt;  The actin-binding site and nucleotide-binding site, although dominated by alpha-helices, also contains a straightened section with two cysteine residues.  The can form a disulfide bond in the presence of a nucleotide that prevents ADP from leaving the active site.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
====X-Ray Crystallography and Scattering====&lt;br /&gt;
&lt;br /&gt;
It was not until recently that crystal structures could be used to analyze myosin and it&#039;s role in the actinomysin chemomechanical cycle.  X-ray diffraction studies have been conducted on whole muscles and muscle fibers to learn how structural changes promote and facilitate motor activity.  Movement of myosin was analyzed under near physiological conditions using modern synchrotron radiation sources.  Structural alterations were created through use of unique time and spatial resolution.  Muscle cells exhibit low scattering power in X-ray images, so a clear crystalline structure cannot not form.  A flat detector is needed because reflections are concentrated in the low angle regions.  Snychrotron radiation generates a monochromatic X-ray breams of diameter 0.2-0.3 mm, similar to that of the muscle fiber, and making high resolution images and video of a single muscle cell possible.&amp;lt;ref name=&amp;quot;Koubassova&amp;quot;&amp;gt;PMID: 22339600&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==Mechanism of Action==&lt;br /&gt;
&lt;br /&gt;
Myosin plays a role in the universal mechanism known as the actinomysin chemomechanical cycle.  Actin binds and releases myosin, causing the myosin lever to interact and relax in a cyclic manner.&amp;lt;ref name=&amp;quot;Varkuti&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
[[Image:picture 1.png]]&lt;br /&gt;
# ATP binds to S1 causing Actin to disassociate out of it&#039;s rigor complex (between actin and the S1 catalytic site on myosin)&lt;br /&gt;
# S1 causes the hydolysis of ATP to ADP and Pi&lt;br /&gt;
# Actin interacts with the S1-ADP-Pi complex and Pi is released&lt;br /&gt;
# S1 catalytic site&#039;s affinity for actin increases and the Actin-S1-ADP forms&lt;br /&gt;
# ADP is released, causing actin and myosin to again enter into the tightly bound rigor complex&amp;lt;ref name=&amp;quot;Ruppel&amp;quot; /&amp;gt;&amp;lt;ref name=&amp;quot;Koubassova&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==Medical Implications and Possible Applications==&lt;br /&gt;
&lt;br /&gt;
The discovery of myosin structure served as a crucial component in understanding the causes of many health related problems.  Dysfunctional myosin mutations have been linked to hypertrophy in the heart.  The power strokes are weaker, making muscle contractions less effective.  The heart enlarges to compensate for inadequate cardiac muscle contractions and consequent poor blood circulation.  Also, blood platelet contractile protein aggregation and secretion is impeded by faulty myosin in patients suffering from idiopathic scoliosis.  A defect in the less-well known myosin VIIA causes Usher 1B syndrome; causing a loss of sight and hearing impairments.  Further research will hopefully give more insight into the unknown causes of other diseases and disorders linked to myosin protein mutations.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==References==&lt;br /&gt;
&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Nishika Patel</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_479&amp;diff=1384993</id>
		<title>Sandbox Reserved 479</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_479&amp;diff=1384993"/>
		<updated>2012-05-02T18:28:45Z</updated>

		<summary type="html">&lt;p&gt;Nishika Patel: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Sandbox_Reserved_Robert_B_Rose_1}}&lt;br /&gt;
&amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Myosin&#039;&#039;&#039; is comprised of 35 different classes of motor proteins, and is universal in all eukaryotic cells.&amp;lt;ref name=&amp;quot;Varkuti&amp;quot;&amp;gt;PMID: 22343723&amp;lt;/ref&amp;gt;  Myosin II is the more well known form of myosin that is involved in muscle contractions; it acts in complex with [[actin]] to create a powerstroke and cause muscular contraction and relaxation.&amp;lt;ref name=&lt;br /&gt;
&amp;quot;Ruppel&amp;quot;&amp;gt;PMID: 8862525&amp;lt;/ref&amp;gt;  Myosin is the contractile unit of a sarcomere.  Repeating units of sarcomeres make up a myofibril (muscle fiber), and bundles of fibers make up a skeletal muscle. The figure below (right) is a proteolytic fragment of myosin generated by papain digestion in &#039;&#039;Gallus gallus&#039;&#039; (chicken) bound to ligands &amp;lt;scene name=&#039;Sandbox_Reserved_479/2_mys_magnesium_ligand/2&#039;&amp;gt;magnesium&amp;lt;/scene&amp;gt; and &amp;lt;scene name=&#039;Sandbox_Reserved_479/2_mys_sulfate_ion/1&#039;&amp;gt;sulfate ion&amp;lt;/scene&amp;gt;.&lt;br /&gt;
{{STRUCTURE_2mys| PDB=2mys | SCENE= }}&lt;br /&gt;
&lt;br /&gt;
==Structure==&lt;br /&gt;
&lt;br /&gt;
Myosin is a 520 kDa hexamer, or a &#039;&#039;&#039;hexa-oligomer&#039;&#039;&#039; (6 subunit) structure.  It is comprised of two heavy chains (weighing 220 kDa each) and 4 light chains (weighing 20 kDa each).&amp;lt;ref name=&amp;quot;CHEM43&amp;quot;&amp;gt;[http://www.cs.stedwards.edu/chem/Chemistry/CHEM43/CHEM43/Myosin/STRUCT~1.HTM]&amp;lt;/ref&amp;gt;  The 2-D structure below of myosin II shows 7 stranded beta sheet and the ATP-binding site between the middle and N-terminal of the protein.  The C-terminal contains the light chains (regulatory domain) and acts as the lever arm to enhance the converter domain&#039;s rotational movements.&amp;lt;ref name=&amp;quot;sampath&amp;quot;&amp;gt;[http://www.sampath.koppole.com/research.htm]&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
[[Image:Mds1.png]]&lt;br /&gt;
&lt;br /&gt;
====Secondary Structure====&lt;br /&gt;
&lt;br /&gt;
The N-terminal comprises a globular head in the heavy chains, and the C-terminal ends with an alpha helix.  The globular head region is also known as S1 (actin-binding site and nucleotide-binding site), and also contains mostly &amp;lt;scene name=&#039;Sandbox_Reserved_479/2mys_alpha_helices/1&#039;&amp;gt;alpha helices&amp;lt;/scene&amp;gt; that are critical to maintaining structure.  The C-terminal end contains interspersed hydrophobic regions that give rise to a &amp;quot;coiled coil&amp;quot; structure.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
====Active Site====&lt;br /&gt;
&lt;br /&gt;
The actin-binding, &amp;lt;scene name=&#039;Sandbox_Reserved_479/2mys_active_site/1&#039;&amp;gt;catalytic site&amp;lt;/scene&amp;gt; of myosin is known as S1 (subfragment 1).  This is the amino-terminal globular head portion of the myosin molecule.  The S1 head is divided into three subdomains: the NH2-terminal 25 kDa region, a central 50 kDa region, and the COOH-terminal 20 kDa region.  Further analysis of the S1 active site of myosin suggests that the γ-phosphate (of ATP) binds near the apex of the 50 kDa cleft.  It is believed to be a region critical to function, because of the presence of evolutionarily conserved residues along the central cleft.&amp;lt;ref name=&amp;quot;Ruppel&amp;quot; /&amp;gt;  The actin-binding site and nucleotide-binding site, although dominated by alpha-helices, also contains a straightened section with two cysteine residues.  The can form a disulfide bond in the presence of a nucleotide that prevents ADP from leaving the active site.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
====X-Ray Crystallography and Scattering====&lt;br /&gt;
&lt;br /&gt;
It was not until recently that crystal structures could be used to analyze myosin and it&#039;s role in the actinomysin chemomechanical cycle.  X-ray diffraction studies have been conducted on whole muscles and muscle fibers to learn how structural changes promote and facilitate motor activity.  Movement of myosin was analyzed under near physiological conditions using modern synchrotron radiation sources.  Structural alterations were created through use of unique time and spatial resolution.  Muscle cells exhibit low scattering power in X-ray images, so a clear crystalline structure cannot not form.  A flat detector is needed because reflections are concentrated in the low angle regions.  Snychrotron radiation generates a monochromatic X-ray breams of diameter 0.2-0.3 mm, similar to that of the muscle fiber, and making high resolution images and video of a single muscle cell possible.&amp;lt;ref name=&amp;quot;Koubassova&amp;quot;&amp;gt;PMID: 22339600&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==Mechanism of Action==&lt;br /&gt;
&lt;br /&gt;
Myosin plays a role in the universal mechanism known as the actinomysin chemomechanical cycle.  Actin binds and releases myosin, causing the myosin lever to interact and relax in a cyclic manner.&amp;lt;ref name=&amp;quot;Varkuti&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
[[Image:picture 1.png]]&lt;br /&gt;
# ATP binds to S1 causing Actin to disassociate out of it&#039;s rigor complex (between actin and the S1 catalytic site on myosin)&lt;br /&gt;
# S1 causes the hydolysis of ATP to ADP and Pi&lt;br /&gt;
# Actin interacts with the S1-ADP-Pi complex and Pi is released&lt;br /&gt;
# S1 catalytic site&#039;s affinity for actin increases and the Actin-S1-ADP forms&lt;br /&gt;
# ADP is released, causing actin and myosin to again enter into the tightly bound rigor complex&amp;lt;ref name=&amp;quot;Ruppel&amp;quot; /&amp;gt;&amp;lt;ref name=&amp;quot;Koubassova&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==Medical Implications and Possible Applications==&lt;br /&gt;
&lt;br /&gt;
The discovery of myosin structure served as a crucial component in understanding the causes of many health related problems.  Dysfunctional myosin mutations have been linked to hypertrophy in the heart.  The power strokes are weaker, making muscle contractions less effective.  The heart enlarges to compensate for inadequate cardiac muscle contractions and consequent poor blood circulation.  Also, blood platelet contractile protein aggregation and secretion is impeded by faulty myosin in patients suffering from idiopathic scoliosis.  A defect in the less-well known myosin VIIA causes Usher 1B syndrome; causing a loss of sight and hearing impairments.  Further research will hopefully give more insight into the unknown causes of other diseases and disorders linked to myosin protein mutations.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==References==&lt;br /&gt;
&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Nishika Patel</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_479&amp;diff=1384936</id>
		<title>Sandbox Reserved 479</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_479&amp;diff=1384936"/>
		<updated>2012-05-02T18:26:19Z</updated>

		<summary type="html">&lt;p&gt;Nishika Patel: /* Structure */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Sandbox_Reserved_Robert_B_Rose_1}}&lt;br /&gt;
&amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Myosin&#039;&#039;&#039; is comprised of 35 different classes of motor proteins, and is universal in all eukaryotic cells.&amp;lt;ref name=&amp;quot;Varkuti&amp;quot;&amp;gt;PMID: 22343723&amp;lt;/ref&amp;gt;  Myosin II is the more well known form of myosin that is involved in muscle contractions; it acts in complex with [[actin]] to create a powerstroke and cause muscular contraction and relaxation.&amp;lt;ref name=&lt;br /&gt;
&amp;quot;Ruppel&amp;quot;&amp;gt;PMID: 8862525&amp;lt;/ref&amp;gt;  Myosin is the contractile unit of a sarcomere.  Repeating units of sarcomeres make up a myofibril (muscle fiber), and bundles of fibers make up a skeletal muscle. The figure below (right) is a proteolytic fragment of myosin generated by papain digestion in &#039;&#039;Gallus gallus&#039;&#039; (chicken) bound to ligands &amp;lt;scene name=&#039;Sandbox_Reserved_479/2_mys_magnesium_ligand/2&#039;&amp;gt;magnesium&amp;lt;/scene&amp;gt; and &amp;lt;scene name=&#039;Sandbox_Reserved_479/2_mys_sulfate_ion/1&#039;&amp;gt;sulfate ion&amp;lt;/scene&amp;gt;.&lt;br /&gt;
{{STRUCTURE_2mys| PDB=2mys | SCENE= }}&lt;br /&gt;
&lt;br /&gt;
==Structure==&lt;br /&gt;
&lt;br /&gt;
Myosin is a 520 kDa hexamer, or a &#039;&#039;&#039;hexa-oligomer&#039;&#039;&#039; (6 subunit) structure.  It is comprised of two heavy chains (weighing 220 kDa each) and 4 light chains (weighing 20 kDa each).&amp;lt;ref name=&amp;quot;CHEM43&amp;quot;&amp;gt;[http://www.cs.stedwards.edu/chem/Chemistry/CHEM43/CHEM43/Myosin/STRUCT~1.HTM]&amp;lt;/ref&amp;gt;  The 2-D structure below of myosin II shows 7 stranded beta sheet and the ATP-binding site between the middle and N-terminal of the protein.  The C-terminal contains the light chains (regulatory domain) and acts as the lever arm to enhance the converter domain&#039;s rotational movements. &lt;br /&gt;
&lt;br /&gt;
[[Image:Mds1.png]]&lt;br /&gt;
&lt;br /&gt;
====Secondary Structure====&lt;br /&gt;
&lt;br /&gt;
The N-terminal comprises a globular head in the heavy chains, and the C-terminal ends with an alpha helix.  The globular head region is also known as S1 (actin-binding site and nucleotide-binding site), and also contains mostly &amp;lt;scene name=&#039;Sandbox_Reserved_479/2mys_alpha_helices/1&#039;&amp;gt;alpha helices&amp;lt;/scene&amp;gt; that are critical to maintaining structure.  The C-terminal end contains interspersed hydrophobic regions that give rise to a &amp;quot;coiled coil&amp;quot; structure.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
====Active Site====&lt;br /&gt;
&lt;br /&gt;
The actin-binding, &amp;lt;scene name=&#039;Sandbox_Reserved_479/2mys_active_site/1&#039;&amp;gt;catalytic site&amp;lt;/scene&amp;gt; of myosin is known as S1 (subfragment 1).  This is the amino-terminal globular head portion of the myosin molecule.  The S1 head is divided into three subdomains: the NH2-terminal 25 kDa region, a central 50 kDa region, and the COOH-terminal 20 kDa region.  Further analysis of the S1 active site of myosin suggests that the γ-phosphate (of ATP) binds near the apex of the 50 kDa cleft.  It is believed to be a region critical to function, because of the presence of evolutionarily conserved residues along the central cleft.&amp;lt;ref name=&amp;quot;Ruppel&amp;quot; /&amp;gt;  The actin-binding site and nucleotide-binding site, although dominated by alpha-helices, also contains a straightened section with two cysteine residues.  The can form a disulfide bond in the presence of a nucleotide that prevents ADP from leaving the active site.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
====X-Ray Crystallography and Scattering====&lt;br /&gt;
&lt;br /&gt;
It was not until recently that crystal structures could be used to analyze myosin and it&#039;s role in the actinomysin chemomechanical cycle.  X-ray diffraction studies have been conducted on whole muscles and muscle fibers to learn how structural changes promote and facilitate motor activity.  Movement of myosin was analyzed under near physiological conditions using modern synchrotron radiation sources.  Structural alterations were created through use of unique time and spatial resolution.  Muscle cells exhibit low scattering power in X-ray images, so a clear crystalline structure cannot not form.  A flat detector is needed because reflections are concentrated in the low angle regions.  Snychrotron radiation generates a monochromatic X-ray breams of diameter 0.2-0.3 mm, similar to that of the muscle fiber, and making high resolution images and video of a single muscle cell possible.&amp;lt;ref name=&amp;quot;Koubassova&amp;quot;&amp;gt;PMID: 22339600&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==Mechanism of Action==&lt;br /&gt;
&lt;br /&gt;
Myosin plays a role in the universal mechanism known as the actinomysin chemomechanical cycle.  Actin binds and releases myosin, causing the myosin lever to interact and relax in a cyclic manner.&amp;lt;ref name=&amp;quot;Varkuti&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
[[Image:picture 1.png]]&lt;br /&gt;
# ATP binds to S1 causing Actin to disassociate out of it&#039;s rigor complex (between actin and the S1 catalytic site on myosin)&lt;br /&gt;
# S1 causes the hydolysis of ATP to ADP and Pi&lt;br /&gt;
# Actin interacts with the S1-ADP-Pi complex and Pi is released&lt;br /&gt;
# S1 catalytic site&#039;s affinity for actin increases and the Actin-S1-ADP forms&lt;br /&gt;
# ADP is released, causing actin and myosin to again enter into the tightly bound rigor complex&amp;lt;ref name=&amp;quot;Ruppel&amp;quot; /&amp;gt;&amp;lt;ref name=&amp;quot;Koubassova&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==Medical Implications and Possible Applications==&lt;br /&gt;
&lt;br /&gt;
The discovery of myosin structure served as a crucial component in understanding the causes of many health related problems.  Dysfunctional myosin mutations have been linked to hypertrophy in the heart.  The power strokes are weaker, making muscle contractions less effective.  The heart enlarges to compensate for inadequate cardiac muscle contractions and consequent poor blood circulation.  Also, blood platelet contractile protein aggregation and secretion is impeded by faulty myosin in patients suffering from idiopathic scoliosis.  A defect in the less-well known myosin VIIA causes Usher 1B syndrome; causing a loss of sight and hearing impairments.  Further research will hopefully give more insight into the unknown causes of other diseases and disorders linked to myosin protein mutations.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==References==&lt;br /&gt;
&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Nishika Patel</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_479&amp;diff=1384803</id>
		<title>Sandbox Reserved 479</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_479&amp;diff=1384803"/>
		<updated>2012-05-02T18:20:44Z</updated>

		<summary type="html">&lt;p&gt;Nishika Patel: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Sandbox_Reserved_Robert_B_Rose_1}}&lt;br /&gt;
&amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Myosin&#039;&#039;&#039; is comprised of 35 different classes of motor proteins, and is universal in all eukaryotic cells.&amp;lt;ref name=&amp;quot;Varkuti&amp;quot;&amp;gt;PMID: 22343723&amp;lt;/ref&amp;gt;  Myosin II is the more well known form of myosin that is involved in muscle contractions; it acts in complex with [[actin]] to create a powerstroke and cause muscular contraction and relaxation.&amp;lt;ref name=&lt;br /&gt;
&amp;quot;Ruppel&amp;quot;&amp;gt;PMID: 8862525&amp;lt;/ref&amp;gt;  Myosin is the contractile unit of a sarcomere.  Repeating units of sarcomeres make up a myofibril (muscle fiber), and bundles of fibers make up a skeletal muscle. The figure below (right) is a proteolytic fragment of myosin generated by papain digestion in &#039;&#039;Gallus gallus&#039;&#039; (chicken) bound to ligands &amp;lt;scene name=&#039;Sandbox_Reserved_479/2_mys_magnesium_ligand/2&#039;&amp;gt;magnesium&amp;lt;/scene&amp;gt; and &amp;lt;scene name=&#039;Sandbox_Reserved_479/2_mys_sulfate_ion/1&#039;&amp;gt;sulfate ion&amp;lt;/scene&amp;gt;.&lt;br /&gt;
{{STRUCTURE_2mys| PDB=2mys | SCENE= }}&lt;br /&gt;
&lt;br /&gt;
==Structure==&lt;br /&gt;
&lt;br /&gt;
Myosin is a 520 kDa hexamer, or a &#039;&#039;&#039;hexa-oligomer&#039;&#039;&#039; (6 subunit) structure.  It is comprised of two heavy chains (weighing 220 kDa each) and 4 light chains (weighing 20 kDa each).&amp;lt;ref name=&amp;quot;CHEM43&amp;quot;&amp;gt;[http://www.cs.stedwards.edu/chem/Chemistry/CHEM43/CHEM43/Myosin/STRUCT~1.HTM]&amp;lt;/ref&amp;gt;  &lt;br /&gt;
&lt;br /&gt;
[[Image:Mds1.png]]&lt;br /&gt;
&lt;br /&gt;
====Secondary Structure====&lt;br /&gt;
&lt;br /&gt;
The N-terminal comprises a globular head in the heavy chains, and the C-terminal ends with an alpha helix.  The globular head region is also known as S1 (actin-binding site and nucleotide-binding site), and also contains mostly &amp;lt;scene name=&#039;Sandbox_Reserved_479/2mys_alpha_helices/1&#039;&amp;gt;alpha helices&amp;lt;/scene&amp;gt; that are critical to maintaining structure.  The C-terminal end contains interspersed hydrophobic regions that give rise to a &amp;quot;coiled coil&amp;quot; structure.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
====Active Site====&lt;br /&gt;
&lt;br /&gt;
The actin-binding, &amp;lt;scene name=&#039;Sandbox_Reserved_479/2mys_active_site/1&#039;&amp;gt;catalytic site&amp;lt;/scene&amp;gt; of myosin is known as S1 (subfragment 1).  This is the amino-terminal globular head portion of the myosin molecule.  The S1 head is divided into three subdomains: the NH2-terminal 25 kDa region, a central 50 kDa region, and the COOH-terminal 20 kDa region.  Further analysis of the S1 active site of myosin suggests that the γ-phosphate (of ATP) binds near the apex of the 50 kDa cleft.  It is believed to be a region critical to function, because of the presence of evolutionarily conserved residues along the central cleft.&amp;lt;ref name=&amp;quot;Ruppel&amp;quot; /&amp;gt;  The actin-binding site and nucleotide-binding site, although dominated by alpha-helices, also contains a straightened section with two cysteine residues.  The can form a disulfide bond in the presence of a nucleotide that prevents ADP from leaving the active site.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
====X-Ray Crystallography and Scattering====&lt;br /&gt;
&lt;br /&gt;
It was not until recently that crystal structures could be used to analyze myosin and it&#039;s role in the actinomysin chemomechanical cycle.  X-ray diffraction studies have been conducted on whole muscles and muscle fibers to learn how structural changes promote and facilitate motor activity.  Movement of myosin was analyzed under near physiological conditions using modern synchrotron radiation sources.  Structural alterations were created through use of unique time and spatial resolution.  Muscle cells exhibit low scattering power in X-ray images, so a clear crystalline structure cannot not form.  A flat detector is needed because reflections are concentrated in the low angle regions.  Snychrotron radiation generates a monochromatic X-ray breams of diameter 0.2-0.3 mm, similar to that of the muscle fiber, and making high resolution images and video of a single muscle cell possible.&amp;lt;ref name=&amp;quot;Koubassova&amp;quot;&amp;gt;PMID: 22339600&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==Mechanism of Action==&lt;br /&gt;
&lt;br /&gt;
Myosin plays a role in the universal mechanism known as the actinomysin chemomechanical cycle.  Actin binds and releases myosin, causing the myosin lever to interact and relax in a cyclic manner.&amp;lt;ref name=&amp;quot;Varkuti&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
[[Image:picture 1.png]]&lt;br /&gt;
# ATP binds to S1 causing Actin to disassociate out of it&#039;s rigor complex (between actin and the S1 catalytic site on myosin)&lt;br /&gt;
# S1 causes the hydolysis of ATP to ADP and Pi&lt;br /&gt;
# Actin interacts with the S1-ADP-Pi complex and Pi is released&lt;br /&gt;
# S1 catalytic site&#039;s affinity for actin increases and the Actin-S1-ADP forms&lt;br /&gt;
# ADP is released, causing actin and myosin to again enter into the tightly bound rigor complex&amp;lt;ref name=&amp;quot;Ruppel&amp;quot; /&amp;gt;&amp;lt;ref name=&amp;quot;Koubassova&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==Medical Implications and Possible Applications==&lt;br /&gt;
&lt;br /&gt;
The discovery of myosin structure served as a crucial component in understanding the causes of many health related problems.  Dysfunctional myosin mutations have been linked to hypertrophy in the heart.  The power strokes are weaker, making muscle contractions less effective.  The heart enlarges to compensate for inadequate cardiac muscle contractions and consequent poor blood circulation.  Also, blood platelet contractile protein aggregation and secretion is impeded by faulty myosin in patients suffering from idiopathic scoliosis.  A defect in the less-well known myosin VIIA causes Usher 1B syndrome; causing a loss of sight and hearing impairments.  Further research will hopefully give more insight into the unknown causes of other diseases and disorders linked to myosin protein mutations.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==References==&lt;br /&gt;
&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Nishika Patel</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=File:Mds1.png&amp;diff=1384791</id>
		<title>File:Mds1.png</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=File:Mds1.png&amp;diff=1384791"/>
		<updated>2012-05-02T18:20:18Z</updated>

		<summary type="html">&lt;p&gt;Nishika Patel: 2mys 2D structure&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;2mys 2D structure&lt;/div&gt;</summary>
		<author><name>Nishika Patel</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_479&amp;diff=1384740</id>
		<title>Sandbox Reserved 479</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_479&amp;diff=1384740"/>
		<updated>2012-05-02T18:18:24Z</updated>

		<summary type="html">&lt;p&gt;Nishika Patel: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Sandbox_Reserved_Robert_B_Rose_1}}&lt;br /&gt;
&amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Myosin&#039;&#039;&#039; is comprised of 35 different classes of motor proteins, and is universal in all eukaryotic cells.&amp;lt;ref name=&amp;quot;Varkuti&amp;quot;&amp;gt;PMID: 22343723&amp;lt;/ref&amp;gt;  Myosin II is the more well known form of myosin that is involved in muscle contractions; it acts in complex with [[actin]] to create a powerstroke and cause muscular contraction and relaxation.&amp;lt;ref name=&lt;br /&gt;
&amp;quot;Ruppel&amp;quot;&amp;gt;PMID: 8862525&amp;lt;/ref&amp;gt;  Myosin is the contractile unit of a sarcomere.  Repeating units of sarcomeres make up a myofibril (muscle fiber), and bundles of fibers make up a skeletal muscle. The figure below (right) is a proteolytic fragment of myosin generated by papain digestion in &#039;&#039;Gallus gallus&#039;&#039; (chicken) bound to ligands &amp;lt;scene name=&#039;Sandbox_Reserved_479/2_mys_magnesium_ligand/2&#039;&amp;gt;magnesium&amp;lt;/scene&amp;gt; and &amp;lt;scene name=&#039;Sandbox_Reserved_479/2_mys_sulfate_ion/1&#039;&amp;gt;sulfate ion&amp;lt;/scene&amp;gt;.&lt;br /&gt;
{{STRUCTURE_2mys| PDB=2mys | SCENE= }}&lt;br /&gt;
&lt;br /&gt;
==Structure==&lt;br /&gt;
&lt;br /&gt;
Myosin is a 520 kDa hexamer, or a &#039;&#039;&#039;hexa-oligomer&#039;&#039;&#039; (6 subunit) structure.  It is comprised of two heavy chains (weighing 220 kDa each) and 4 light chains (weighing 20 kDa each).&amp;lt;ref name=&amp;quot;CHEM43&amp;quot;&amp;gt;[http://www.cs.stedwards.edu/chem/Chemistry/CHEM43/CHEM43/Myosin/STRUCT~1.HTM]&amp;lt;/ref&amp;gt;  &lt;br /&gt;
&lt;br /&gt;
[[Image:mds1.jpg]]&lt;br /&gt;
&lt;br /&gt;
====Secondary Structure====&lt;br /&gt;
&lt;br /&gt;
The N-terminal comprises a globular head in the heavy chains, and the C-terminal ends with an alpha helix.  The globular head region is also known as S1 (actin-binding site and nucleotide-binding site), and also contains mostly &amp;lt;scene name=&#039;Sandbox_Reserved_479/2mys_alpha_helices/1&#039;&amp;gt;alpha helices&amp;lt;/scene&amp;gt; that are critical to maintaining structure.  The C-terminal end contains interspersed hydrophobic regions that give rise to a &amp;quot;coiled coil&amp;quot; structure.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
====Active Site====&lt;br /&gt;
&lt;br /&gt;
The actin-binding, &amp;lt;scene name=&#039;Sandbox_Reserved_479/2mys_active_site/1&#039;&amp;gt;catalytic site&amp;lt;/scene&amp;gt; of myosin is known as S1 (subfragment 1).  This is the amino-terminal globular head portion of the myosin molecule.  The S1 head is divided into three subdomains: the NH2-terminal 25 kDa region, a central 50 kDa region, and the COOH-terminal 20 kDa region.  Further analysis of the S1 active site of myosin suggests that the γ-phosphate (of ATP) binds near the apex of the 50 kDa cleft.  It is believed to be a region critical to function, because of the presence of evolutionarily conserved residues along the central cleft.&amp;lt;ref name=&amp;quot;Ruppel&amp;quot; /&amp;gt;  The actin-binding site and nucleotide-binding site, although dominated by alpha-helices, also contains a straightened section with two cysteine residues.  The can form a disulfide bond in the presence of a nucleotide that prevents ADP from leaving the active site.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
====X-Ray Crystallography and Scattering====&lt;br /&gt;
&lt;br /&gt;
It was not until recently that crystal structures could be used to analyze myosin and it&#039;s role in the actinomysin chemomechanical cycle.  X-ray diffraction studies have been conducted on whole muscles and muscle fibers to learn how structural changes promote and facilitate motor activity.  Movement of myosin was analyzed under near physiological conditions using modern synchrotron radiation sources.  Structural alterations were created through use of unique time and spatial resolution.  Muscle cells exhibit low scattering power in X-ray images, so a clear crystalline structure cannot not form.  A flat detector is needed because reflections are concentrated in the low angle regions.  Snychrotron radiation generates a monochromatic X-ray breams of diameter 0.2-0.3 mm, similar to that of the muscle fiber, and making high resolution images and video of a single muscle cell possible.&amp;lt;ref name=&amp;quot;Koubassova&amp;quot;&amp;gt;PMID: 22339600&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==Mechanism of Action==&lt;br /&gt;
&lt;br /&gt;
Myosin plays a role in the universal mechanism known as the actinomysin chemomechanical cycle.  Actin binds and releases myosin, causing the myosin lever to interact and relax in a cyclic manner.&amp;lt;ref name=&amp;quot;Varkuti&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
[[Image:picture 1.png]]&lt;br /&gt;
# ATP binds to S1 causing Actin to disassociate out of it&#039;s rigor complex (between actin and the S1 catalytic site on myosin)&lt;br /&gt;
# S1 causes the hydolysis of ATP to ADP and Pi&lt;br /&gt;
# Actin interacts with the S1-ADP-Pi complex and Pi is released&lt;br /&gt;
# S1 catalytic site&#039;s affinity for actin increases and the Actin-S1-ADP forms&lt;br /&gt;
# ADP is released, causing actin and myosin to again enter into the tightly bound rigor complex&amp;lt;ref name=&amp;quot;Ruppel&amp;quot; /&amp;gt;&amp;lt;ref name=&amp;quot;Koubassova&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==Medical Implications and Possible Applications==&lt;br /&gt;
&lt;br /&gt;
The discovery of myosin structure served as a crucial component in understanding the causes of many health related problems.  Dysfunctional myosin mutations have been linked to hypertrophy in the heart.  The power strokes are weaker, making muscle contractions less effective.  The heart enlarges to compensate for inadequate cardiac muscle contractions and consequent poor blood circulation.  Also, blood platelet contractile protein aggregation and secretion is impeded by faulty myosin in patients suffering from idiopathic scoliosis.  A defect in the less-well known myosin VIIA causes Usher 1B syndrome; causing a loss of sight and hearing impairments.  Further research will hopefully give more insight into the unknown causes of other diseases and disorders linked to myosin protein mutations.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==References==&lt;br /&gt;
&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Nishika Patel</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_479&amp;diff=1384704</id>
		<title>Sandbox Reserved 479</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_479&amp;diff=1384704"/>
		<updated>2012-05-02T18:17:01Z</updated>

		<summary type="html">&lt;p&gt;Nishika Patel: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Sandbox_Reserved_Robert_B_Rose_1}}&lt;br /&gt;
&amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Myosin&#039;&#039;&#039; is comprised of 35 different classes of motor proteins, and is universal in all eukaryotic cells.&amp;lt;ref name=&amp;quot;Varkuti&amp;quot;&amp;gt;PMID: 22343723&amp;lt;/ref&amp;gt;  Myosin II is the more well known form of myosin that is involved in muscle contractions; it acts in complex with [[actin]] to create a powerstroke and cause muscular contraction and relaxation.&amp;lt;ref name=&lt;br /&gt;
&amp;quot;Ruppel&amp;quot;&amp;gt;PMID: 8862525&amp;lt;/ref&amp;gt;  Myosin is the contractile unit of a sarcomere.  Repeating units of sarcomeres make up a myofibril (muscle fiber), and bundles of fibers make up a skeletal muscle. The figure below (right) is a proteolytic fragment of myosin generated by papain digestion in &#039;&#039;Gallus gallus&#039;&#039; (chicken) bound to ligands &amp;lt;scene name=&#039;Sandbox_Reserved_479/2_mys_magnesium_ligand/2&#039;&amp;gt;magnesium&amp;lt;/scene&amp;gt; and &amp;lt;scene name=&#039;Sandbox_Reserved_479/2_mys_sulfate_ion/1&#039;&amp;gt;sulfate ion&amp;lt;/scene&amp;gt;.&lt;br /&gt;
{{STRUCTURE_2mys| PDB=2mys | SCENE= }}&lt;br /&gt;
&lt;br /&gt;
==Structure==&lt;br /&gt;
&lt;br /&gt;
Myosin is a 520 kDa hexamer, or a &#039;&#039;&#039;hexa-oligomer&#039;&#039;&#039; (6 subunit) structure.  It is comprised of two heavy chains (weighing 220 kDa each) and 4 light chains (weighing 20 kDa each).&amp;lt;ref name=&amp;quot;CHEM43&amp;quot;&amp;gt;[http://www.cs.stedwards.edu/chem/Chemistry/CHEM43/CHEM43/Myosin/STRUCT~1.HTM]&amp;lt;/ref&amp;gt;  &lt;br /&gt;
&lt;br /&gt;
====Secondary Structure====&lt;br /&gt;
&lt;br /&gt;
The N-terminal comprises a globular head in the heavy chains, and the C-terminal ends with an alpha helix.  The globular head region is also known as S1 (actin-binding site and nucleotide-binding site), and also contains mostly &amp;lt;scene name=&#039;Sandbox_Reserved_479/2mys_alpha_helices/1&#039;&amp;gt;alpha helices&amp;lt;/scene&amp;gt; that are critical to maintaining structure.  The C-terminal end contains interspersed hydrophobic regions that give rise to a &amp;quot;coiled coil&amp;quot; structure.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
====Active Site====&lt;br /&gt;
&lt;br /&gt;
The actin-binding, &amp;lt;scene name=&#039;Sandbox_Reserved_479/2mys_active_site/1&#039;&amp;gt;catalytic site&amp;lt;/scene&amp;gt; of myosin is known as S1 (subfragment 1).  This is the amino-terminal globular head portion of the myosin molecule.  The S1 head is divided into three subdomains: the NH2-terminal 25 kDa region, a central 50 kDa region, and the COOH-terminal 20 kDa region.  Further analysis of the S1 active site of myosin suggests that the γ-phosphate (of ATP) binds near the apex of the 50 kDa cleft.  It is believed to be a region critical to function, because of the presence of evolutionarily conserved residues along the central cleft.&amp;lt;ref name=&amp;quot;Ruppel&amp;quot; /&amp;gt;  The actin-binding site and nucleotide-binding site, although dominated by alpha-helices, also contains a straightened section with two cysteine residues.  The can form a disulfide bond in the presence of a nucleotide that prevents ADP from leaving the active site.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
====X-Ray Crystallography and Scattering====&lt;br /&gt;
&lt;br /&gt;
It was not until recently that crystal structures could be used to analyze myosin and it&#039;s role in the actinomysin chemomechanical cycle.  X-ray diffraction studies have been conducted on whole muscles and muscle fibers to learn how structural changes promote and facilitate motor activity.  Movement of myosin was analyzed under near physiological conditions using modern synchrotron radiation sources.  Structural alterations were created through use of unique time and spatial resolution.  Muscle cells exhibit low scattering power in X-ray images, so a clear crystalline structure cannot not form.  A flat detector is needed because reflections are concentrated in the low angle regions.  Snychrotron radiation generates a monochromatic X-ray breams of diameter 0.2-0.3 mm, similar to that of the muscle fiber, and making high resolution images and video of a single muscle cell possible.&amp;lt;ref name=&amp;quot;Koubassova&amp;quot;&amp;gt;PMID: 22339600&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==Mechanism of Action==&lt;br /&gt;
&lt;br /&gt;
Myosin plays a role in the universal mechanism known as the actinomysin chemomechanical cycle.  Actin binds and releases myosin, causing the myosin lever to interact and relax in a cyclic manner.&amp;lt;ref name=&amp;quot;Varkuti&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
[[Image:picture 1.png]]&lt;br /&gt;
# ATP binds to S1 causing Actin to disassociate out of it&#039;s rigor complex (between actin and the S1 catalytic site on myosin)&lt;br /&gt;
# S1 causes the hydolysis of ATP to ADP and Pi&lt;br /&gt;
# Actin interacts with the S1-ADP-Pi complex and Pi is released&lt;br /&gt;
# S1 catalytic site&#039;s affinity for actin increases and the Actin-S1-ADP forms&lt;br /&gt;
# ADP is released, causing actin and myosin to again enter into the tightly bound rigor complex&amp;lt;ref name=&amp;quot;Ruppel&amp;quot; /&amp;gt;&amp;lt;ref name=&amp;quot;Koubassova&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==Medical Implications and Possible Applications==&lt;br /&gt;
&lt;br /&gt;
The discovery of myosin structure served as a crucial component in understanding the causes of many health related problems.  Dysfunctional myosin mutations have been linked to hypertrophy in the heart.  The power strokes are weaker, making muscle contractions less effective.  The heart enlarges to compensate for inadequate cardiac muscle contractions and consequent poor blood circulation.  Also, blood platelet contractile protein aggregation and secretion is impeded by faulty myosin in patients suffering from idiopathic scoliosis.  A defect in the less-well known myosin VIIA causes Usher 1B syndrome; causing a loss of sight and hearing impairments.  Further research will hopefully give more insight into the unknown causes of other diseases and disorders linked to myosin protein mutations.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==References==&lt;br /&gt;
&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Nishika Patel</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_479&amp;diff=1384600</id>
		<title>Sandbox Reserved 479</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_479&amp;diff=1384600"/>
		<updated>2012-05-02T18:06:16Z</updated>

		<summary type="html">&lt;p&gt;Nishika Patel: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Sandbox_Reserved_Robert_B_Rose_1}}&lt;br /&gt;
&amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Myosin&#039;&#039;&#039; is comprised of 35 different classes of motor proteins, and is universal in all eukaryotic cells.&amp;lt;ref name=&amp;quot;Varkuti&amp;quot;&amp;gt;PMID: 22343723&amp;lt;/ref&amp;gt;  Myosin II is the more well known form of myosin; it acts in complex with [[actin]] to create a powerstroke and cause muscular contraction and relaxation.&amp;lt;ref name=&lt;br /&gt;
&amp;quot;Ruppel&amp;quot;&amp;gt;PMID: 8862525&amp;lt;/ref&amp;gt;  Myosin is the contractile unit of a sarcomere.  Repeating units of sarcomeres make up a myofibril (muscle fiber), and bundles of fibers make up a skeletal muscle. The figure below (right) is a proteolytic fragment of myosin generated by papain digestion in &#039;&#039;Gallus gallus&#039;&#039; (chicken) bound to ligands &amp;lt;scene name=&#039;Sandbox_Reserved_479/2_mys_magnesium_ligand/2&#039;&amp;gt;magnesium&amp;lt;/scene&amp;gt; and &amp;lt;scene name=&#039;Sandbox_Reserved_479/2_mys_sulfate_ion/1&#039;&amp;gt;sulfate ion&amp;lt;/scene&amp;gt;.&lt;br /&gt;
{{STRUCTURE_2mys| PDB=2mys | SCENE= }}&lt;br /&gt;
&lt;br /&gt;
==Structure==&lt;br /&gt;
&lt;br /&gt;
Myosin is a 520 kDa hexamer, or a &#039;&#039;&#039;hexa-oligomer&#039;&#039;&#039; (6 subunit) structure.  It is comprised of two heavy chains (weighing 220 kDa each) and 4 light chains (weighing 20 kDa each).&amp;lt;ref name=&amp;quot;CHEM43&amp;quot;&amp;gt;[http://www.cs.stedwards.edu/chem/Chemistry/CHEM43/CHEM43/Myosin/STRUCT~1.HTM]&amp;lt;/ref&amp;gt;  &lt;br /&gt;
&lt;br /&gt;
====Secondary Structure====&lt;br /&gt;
&lt;br /&gt;
The N-terminal comprises a globular head in the heavy chains, and the C-terminal ends with an alpha helix.  The globular head region is also known as S1 (actin-binding site and nucleotide-binding site), and also contains mostly &amp;lt;scene name=&#039;Sandbox_Reserved_479/2mys_alpha_helices/1&#039;&amp;gt;alpha helices&amp;lt;/scene&amp;gt; that are critical to maintaining structure.  The C-terminal end contains interspersed hydrophobic regions that give rise to a &amp;quot;coiled coil&amp;quot; structure.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
====Active Site====&lt;br /&gt;
&lt;br /&gt;
The actin-binding, &amp;lt;scene name=&#039;Sandbox_Reserved_479/2mys_active_site/1&#039;&amp;gt;catalytic site&amp;lt;/scene&amp;gt; of myosin is known as S1 (subfragment 1).  This is the amino-terminal globular head portion of the myosin molecule.  The S1 head is divided into three subdomains: the NH2-terminal 25 kDa region, a central 50 kDa region, and the COOH-terminal 20 kDa region.  Further analysis of the S1 active site of myosin suggests that the γ-phosphate (of ATP) binds near the apex of the 50 kDa cleft.  It is believed to be a region critical to function, because of the presence of evolutionarily conserved residues along the central cleft.&amp;lt;ref name=&amp;quot;Ruppel&amp;quot; /&amp;gt;  The actin-binding site and nucleotide-binding site, although dominated by alpha-helices, also contains a straightened section with two cysteine residues.  The can form a disulfide bond in the presence of a nucleotide that prevents ADP from leaving the active site.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
====X-Ray Crystallography and Scattering====&lt;br /&gt;
&lt;br /&gt;
It was not until recently that crystal structures could be used to analyze myosin and it&#039;s role in the actinomysin chemomechanical cycle.  X-ray diffraction studies have been conducted on whole muscles and muscle fibers to learn how structural changes promote and facilitate motor activity.  Movement of myosin was analyzed under near physiological conditions using modern synchrotron radiation sources.  Structural alterations were created through use of unique time and spatial resolution.  Muscle cells exhibit low scattering power in X-ray images, so a clear crystalline structure cannot not form.  A flat detector is needed because reflections are concentrated in the low angle regions.  Snychrotron radiation generates a monochromatic X-ray breams of diameter 0.2-0.3 mm, similar to that of the muscle fiber, and making high resolution images and video of a single muscle cell possible.&amp;lt;ref name=&amp;quot;Koubassova&amp;quot;&amp;gt;PMID: 22339600&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==Mechanism of Action==&lt;br /&gt;
&lt;br /&gt;
Myosin plays a role in the universal mechanism known as the actinomysin chemomechanical cycle.  Actin binds and releases myosin, causing the myosin lever to interact and relax in a cyclic manner.&amp;lt;ref name=&amp;quot;Varkuti&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
[[Image:picture 1.png]]&lt;br /&gt;
# ATP binds to S1 causing Actin to disassociate out of it&#039;s rigor complex (between actin and the S1 catalytic site on myosin)&lt;br /&gt;
# S1 causes the hydolysis of ATP to ADP and Pi&lt;br /&gt;
# Actin interacts with the S1-ADP-Pi complex and Pi is released&lt;br /&gt;
# S1 catalytic site&#039;s affinity for actin increases and the Actin-S1-ADP forms&lt;br /&gt;
# ADP is released, causing actin and myosin to again enter into the tightly bound rigor complex&amp;lt;ref name=&amp;quot;Ruppel&amp;quot; /&amp;gt;&amp;lt;ref name=&amp;quot;Koubassova&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==Medical Implications and Possible Applications==&lt;br /&gt;
&lt;br /&gt;
The discovery of myosin structure served as a crucial component in understanding the causes of many health related problems.  Dysfunctional myosin mutations have been linked to hypertrophy in the heart.  The power strokes are weaker, making muscle contractions less effective.  The heart enlarges to compensate for inadequate cardiac muscle contractions and consequent poor blood circulation.  Also, blood platelet contractile protein aggregation and secretion is impeded by faulty myosin in patients suffering from idiopathic scoliosis.  A defect in the less-well known myosin VIIA causes Usher 1B syndrome; causing a loss of sight and hearing impairments.  Further research will hopefully give more insight into the unknown causes of other diseases and disorders linked to myosin protein mutations.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==References==&lt;br /&gt;
&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Nishika Patel</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_479&amp;diff=1384598</id>
		<title>Sandbox Reserved 479</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_479&amp;diff=1384598"/>
		<updated>2012-05-02T18:03:05Z</updated>

		<summary type="html">&lt;p&gt;Nishika Patel: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Sandbox_Reserved_Robert_B_Rose_1}}&lt;br /&gt;
&amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Myosin&#039;&#039;&#039; is comprised of 35 different classes of motor proteins, and is universal in all eukaryotic cells.&amp;lt;ref name=&amp;quot;Varkuti&amp;quot;&amp;gt;PMID: 22343723&amp;lt;/ref&amp;gt;  Myosin II is the more well known form of myosin; it acts in complex with [[actin]] to create a powerstroke and cause muscular contraction and relaxation.&amp;lt;ref name=&lt;br /&gt;
&amp;quot;Ruppel&amp;quot;&amp;gt;PMID: 8862525&amp;lt;/ref&amp;gt;  Myosin is the contractile unit of a sarcomere.  Repeating units of sarcomeres make up a myofibril (muscle fiber), and bundles of fibers make up a skeletal muscle. The figure below (right) is a proteolytic fragment of myosin generated by papain digestion in &#039;&#039;Gallus gallus&#039;&#039; (chicken) bound to ligands &amp;lt;scene name=&#039;Sandbox_Reserved_479/2_mys_magnesium_ligand/2&#039;&amp;gt;magnesium&amp;lt;/scene&amp;gt; and &amp;lt;scene name=&#039;Sandbox_Reserved_479/2_mys_sulfate_ion/1&#039;&amp;gt;sulfate ion&amp;lt;/scene&amp;gt;.&lt;br /&gt;
{{STRUCTURE_2mys| PDB=2mys | SCENE= }}&lt;br /&gt;
&lt;br /&gt;
==Structure==&lt;br /&gt;
&lt;br /&gt;
Myosin is a 520 kDa hexamer, or a &#039;&#039;&#039;hexa-oligomer&#039;&#039;&#039; (6 subunit) structure.  It is comprised of two heavy chains (weighing 220 kDa each) and 4 light chains (weighing 20 kDa each).&amp;lt;ref name=&amp;quot;CHEM43&amp;quot;&amp;gt;[http://www.cs.stedwards.edu/chem/Chemistry/CHEM43/CHEM43/Myosin/STRUCT~1.HTM]&amp;lt;/ref&amp;gt;  &lt;br /&gt;
&lt;br /&gt;
====Secondary Structure====&lt;br /&gt;
&lt;br /&gt;
The N-terminal comprises a globular head in the heavy chains, and the C-terminal ends with an alpha helix.  The globular head region is also known as S1 (actin-binding site and nucleotide-binding site), and also contains mostly &amp;lt;scene name=&#039;Sandbox_Reserved_479/2mys_alpha_helices/1&#039;&amp;gt;alpha helices&amp;lt;/scene&amp;gt; that are critical to maintaining structure.  The C-terminal end contains interspersed hydrophobic regions that give rise to a &amp;quot;coiled coil&amp;quot; structure.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
====Active Site====&lt;br /&gt;
&lt;br /&gt;
The actin-binding, &amp;lt;scene name=&#039;Sandbox_Reserved_479/2mys_active_site/1&#039;&amp;gt;catalytic site&amp;lt;/scene&amp;gt; of myosin is known as S1 (subfragment 1).  This is the amino-terminal globular head portion of the myosin molecule.  The S1 head is divided into three subdomains: the NH2-terminal 25 kDa region, a central 50 kDa region, and the COOH-terminal 20 kDa region.  Further analysis of the S1 active site of myosin suggests that the γ-phosphate (of ATP) binds near the apex of the 50 kDa cleft.  It is believed to be a region critical to function, because of the presence of evolutionarily conserved residues along the central cleft.&amp;lt;ref name=&amp;quot;Ruppel&amp;quot; /&amp;gt;  The actin-binding site and nucleotide-binding site, although dominated by alpha-helices, also contains a straightened section with two cysteine residues.  The can form a disulfide bond in the presence of a nucleotide that prevents ADP from leaving the active site.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
====X-Ray Crystallography and Diffraction====&lt;br /&gt;
&lt;br /&gt;
It was not until recently that crystal structures could be used to analyze myosin and it&#039;s role in the actinomysin chemomechanical cycle.  X-ray diffraction studies have been conducted on whole muscles and muscle fibers to learn how structural changes promote and facilitate motor activity.  Movement of myosin was analyzed under near physiological conditions using modern synchrotron radiation sources.  Structural alterations were created through use of unique time and spatial resolution.  Muscle cells exhibit low scattering power in X-ray images, so a clear crystalline structure cannot not form.  A flat detector is needed because reflections are concentrated in the low angle regions.  Snychrotron radiation generates a monochromatic X-ray breams of diameter 0.2-0.3 mm, similar to that of the muscle fiber, and making high resolution images and video of a single muscle cell possible.&amp;lt;ref name=&amp;quot;Koubassova&amp;quot;&amp;gt;PMID: 22339600&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==Mechanism of Action==&lt;br /&gt;
&lt;br /&gt;
Myosin plays a role in the universal mechanism known as the actinomysin chemomechanical cycle.  Actin binds and releases myosin, causing the myosin lever to interact and relax in a cyclic manner.&amp;lt;ref name=&amp;quot;Varkuti&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
[[Image:picture 1.png]]&lt;br /&gt;
# ATP binds to S1 causing Actin to disassociate out of it&#039;s rigor complex (between actin and the S1 catalytic site on myosin)&lt;br /&gt;
# S1 causes the hydolysis of ATP to ADP and Pi&lt;br /&gt;
# Actin interacts with the S1-ADP-Pi complex and Pi is released&lt;br /&gt;
# S1 catalytic site&#039;s affinity for actin increases and the Actin-S1-ADP forms&lt;br /&gt;
# ADP is released, causing actin and myosin to again enter into the tightly bound rigor complex&amp;lt;ref name=&amp;quot;Ruppel&amp;quot; /&amp;gt;&amp;lt;ref name=&amp;quot;Koubassova&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==Medical Implications and Possible Applications==&lt;br /&gt;
&lt;br /&gt;
The discovery of myosin structure served as a crucial component in understanding the causes of many health related problems.  Dysfunctional myosin mutations have been linked to hypertrophy in the heart.  The heart enlarges to compensate for inadequate cardiac muscle contractions and consequent poor blood circulation.  Also, blood platelet contractile protein aggregation and secretion is impeded by faulty myosin in patients suffering from idiopathic scoliosis.  A defect in the less-well known myosin VIIA causes Usher 1B syndrome; causing a loss of sight and hearing impairments.  Further research will hopefully give more insight into the unknown causes of other diseases and disorders linked to myosin protein mutations.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==References==&lt;br /&gt;
&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Nishika Patel</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_452&amp;diff=1381683</id>
		<title>Sandbox Reserved 452</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_452&amp;diff=1381683"/>
		<updated>2012-04-27T02:01:27Z</updated>

		<summary type="html">&lt;p&gt;Nishika Patel: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;== C-Myc ==&lt;br /&gt;
&lt;br /&gt;
&amp;lt;Structure load=&#039;1A93&#039; size=&#039;500&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;Insert caption here&#039; scene=&#039;Insert optional scene name here&#039; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
THIS IS THE &amp;lt;scene name=&#039;Sandbox_Reserved_452/1a93_active_site/5&#039;&amp;gt;active site (AC4, AC3)&amp;lt;/scene&amp;gt; OF YOUR PROTEIN.&lt;br /&gt;
&lt;br /&gt;
THIS SHOWS THE &amp;lt;scene name=&#039;Sandbox_Reserved_452/Disulfide_bond/1&#039;&amp;gt;disulfide bond&amp;lt;/scene&amp;gt; IN THE PROTEIN.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
--&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Introduction ==&lt;br /&gt;
C-Myc is a [http://en.wikipedia.org/wiki/Transcription_factor transcription factor] involved in the [http://en.wikipedia.org/wiki/Cell_cycle cell cycle] specifically with the stimulation of cell proliferation but is also involved in the regulation of [http://en.wikipedia.org/wiki/Apoptosis apoptosis], [http://en.wikipedia.org/wiki/Cell_differentiation cell differentiation], cell competition, and [http://en.wikipedia.org/wiki/Senescence senescence] &amp;lt;ref&amp;gt;PMID:22510570&amp;lt;/ref&amp;gt;. C-Myc is a [http://en.wikipedia.org/wiki/DNA-binding_protein DNA binding protein] and functions primarily by inducing transcription through the formation of [http://en.wikipedia.org/wiki/Protein_dimer heterodimers] primarily with [http://en.wikipedia.org/wiki/MAX_(gene) Max proteins]. C-Myc&#039;s interactions are not limited to only Max protiens as it has been shown to interact with [http://en.wikipedia.org/wiki/BRCA1 BRCA1]&amp;lt;ref&amp;gt;PMID:9788437&amp;lt;/ref&amp;gt;, [http://en.wikipedia.org/wiki/Mapk1 MAPK1]&amp;lt;ref&amp;gt;PMID: 7957875&amp;lt;/ref&amp;gt;, [http://en.wikipedia.org/wiki/P73 p73]&amp;lt;ref&amp;gt;PMID:11844794&amp;lt;/ref&amp;gt;, and many more. C-Myc is also a [http://en.wikipedia.org/wiki/Oncogene protooncogene], and when normally expressed is strictly regulated by signals within the cell cycle, so that when a cell is resting its c-myc expression is little while when growing it expresses high levels of c-myc. When normal cells overexpression of c-myc activates a protection pathway and the abnormal cells are thus eliminated from the host organism through apoptosis, thus protecting the organism. &lt;br /&gt;
&lt;br /&gt;
== Structure ==&lt;br /&gt;
The c-myc protein contains two specific regions that characterize them as transcription factors: a carboxy-terminal basix helix-loop-helix leucine zipper motif and an amino terminal transactivation domain&amp;lt;ref&amp;gt;PMID:8193530&amp;lt;/ref&amp;gt;. Immediatley following the basic region within the c-myc protein is the helix -loop-helix motif which has been shown to interact with DNA through binding &amp;lt;ref&amp;gt;PMID:8193530&amp;lt;/ref&amp;gt;. The c-myc gene is essientially found on human chromosome 8q24 and contains three exons. &lt;br /&gt;
&lt;br /&gt;
== Medical Uses and Therapeutic Opportunities ==&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== References ==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Nishika Patel</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_452&amp;diff=1381682</id>
		<title>Sandbox Reserved 452</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_452&amp;diff=1381682"/>
		<updated>2012-04-27T01:58:43Z</updated>

		<summary type="html">&lt;p&gt;Nishika Patel: /* C-Myc */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;== C-Myc ==&lt;br /&gt;
&lt;br /&gt;
&amp;lt;Structure load=&#039;1A93&#039; size=&#039;500&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;Insert caption here&#039; scene=&#039;Insert optional scene name here&#039; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
THIS IS THE &amp;lt;scene name=&#039;Sandbox_Reserved_452/1a93_active_site/4&#039;&amp;gt;active site (AC4, AC3)&amp;lt;/scene&amp;gt; OF YOUR PROTEIN.  &lt;br /&gt;
&lt;br /&gt;
THIS SHOWS THE &amp;lt;scene name=&#039;Sandbox_Reserved_452/Disulfide_bond/1&#039;&amp;gt;disulfide bond&amp;lt;/scene&amp;gt; IN THE PROTEIN.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
--&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Introduction ==&lt;br /&gt;
C-Myc is a [http://en.wikipedia.org/wiki/Transcription_factor transcription factor] involved in the [http://en.wikipedia.org/wiki/Cell_cycle cell cycle] specifically with the stimulation of cell proliferation but is also involved in the regulation of [http://en.wikipedia.org/wiki/Apoptosis apoptosis], [http://en.wikipedia.org/wiki/Cell_differentiation cell differentiation], cell competition, and [http://en.wikipedia.org/wiki/Senescence senescence] &amp;lt;ref&amp;gt;PMID:22510570&amp;lt;/ref&amp;gt;. C-Myc is a [http://en.wikipedia.org/wiki/DNA-binding_protein DNA binding protein] and functions primarily by inducing transcription through the formation of [http://en.wikipedia.org/wiki/Protein_dimer heterodimers] primarily with [http://en.wikipedia.org/wiki/MAX_(gene) Max proteins]. C-Myc&#039;s interactions are not limited to only Max protiens as it has been shown to interact with [http://en.wikipedia.org/wiki/BRCA1 BRCA1]&amp;lt;ref&amp;gt;PMID:9788437&amp;lt;/ref&amp;gt;, [http://en.wikipedia.org/wiki/Mapk1 MAPK1]&amp;lt;ref&amp;gt;PMID: 7957875&amp;lt;/ref&amp;gt;, [http://en.wikipedia.org/wiki/P73 p73]&amp;lt;ref&amp;gt;PMID:11844794&amp;lt;/ref&amp;gt;, and many more. C-Myc is also a [http://en.wikipedia.org/wiki/Oncogene protooncogene], and when normally expressed is strictly regulated by signals within the cell cycle, so that when a cell is resting its c-myc expression is little while when growing it expresses high levels of c-myc. When normal cells overexpression of c-myc activates a protection pathway and the abnormal cells are thus eliminated from the host organism through apoptosis, thus protecting the organism. &lt;br /&gt;
&lt;br /&gt;
== Structure ==&lt;br /&gt;
The c-myc protein contains two specific regions that characterize them as transcription factors: a carboxy-terminal basix helix-loop-helix leucine zipper motif and an amino terminal transactivation domain&amp;lt;ref&amp;gt;PMID:8193530&amp;lt;/ref&amp;gt;. Immediatley following the basic region within the c-myc protein is the helix -loop-helix motif which has been shown to interact with DNA through binding &amp;lt;ref&amp;gt;PMID:8193530&amp;lt;/ref&amp;gt;. The c-myc gene is essientially found on human chromosome 8q24 and contains three exons. &lt;br /&gt;
&lt;br /&gt;
== Medical Uses and Therapeutic Opportunities ==&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== References ==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Nishika Patel</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_452&amp;diff=1381681</id>
		<title>Sandbox Reserved 452</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_452&amp;diff=1381681"/>
		<updated>2012-04-27T01:58:14Z</updated>

		<summary type="html">&lt;p&gt;Nishika Patel: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;== C-Myc ==&lt;br /&gt;
&lt;br /&gt;
&amp;lt;Structure load=&#039;1A93&#039; size=&#039;500&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;Insert caption here&#039; scene=&#039;Insert optional scene name here&#039; /&amp;gt;&lt;br /&gt;
{{STRUCTURE_1A93| PDB=1A93 | SCENE= }}&lt;br /&gt;
&lt;br /&gt;
THIS IS THE &amp;lt;scene name=&#039;Sandbox_Reserved_452/1a93_active_site/4&#039;&amp;gt;active site (AC4, AC3)&amp;lt;/scene&amp;gt; OF YOUR PROTEIN.  &lt;br /&gt;
&lt;br /&gt;
THIS SHOWS THE &amp;lt;scene name=&#039;Sandbox_Reserved_452/Disulfide_bond/1&#039;&amp;gt;disulfide bond&amp;lt;/scene&amp;gt; IN THE PROTEIN.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
--&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Introduction ==&lt;br /&gt;
C-Myc is a [http://en.wikipedia.org/wiki/Transcription_factor transcription factor] involved in the [http://en.wikipedia.org/wiki/Cell_cycle cell cycle] specifically with the stimulation of cell proliferation but is also involved in the regulation of [http://en.wikipedia.org/wiki/Apoptosis apoptosis], [http://en.wikipedia.org/wiki/Cell_differentiation cell differentiation], cell competition, and [http://en.wikipedia.org/wiki/Senescence senescence] &amp;lt;ref&amp;gt;PMID:22510570&amp;lt;/ref&amp;gt;. C-Myc is a [http://en.wikipedia.org/wiki/DNA-binding_protein DNA binding protein] and functions primarily by inducing transcription through the formation of [http://en.wikipedia.org/wiki/Protein_dimer heterodimers] primarily with [http://en.wikipedia.org/wiki/MAX_(gene) Max proteins]. C-Myc&#039;s interactions are not limited to only Max protiens as it has been shown to interact with [http://en.wikipedia.org/wiki/BRCA1 BRCA1]&amp;lt;ref&amp;gt;PMID:9788437&amp;lt;/ref&amp;gt;, [http://en.wikipedia.org/wiki/Mapk1 MAPK1]&amp;lt;ref&amp;gt;PMID: 7957875&amp;lt;/ref&amp;gt;, [http://en.wikipedia.org/wiki/P73 p73]&amp;lt;ref&amp;gt;PMID:11844794&amp;lt;/ref&amp;gt;, and many more. C-Myc is also a [http://en.wikipedia.org/wiki/Oncogene protooncogene], and when normally expressed is strictly regulated by signals within the cell cycle, so that when a cell is resting its c-myc expression is little while when growing it expresses high levels of c-myc. When normal cells overexpression of c-myc activates a protection pathway and the abnormal cells are thus eliminated from the host organism through apoptosis, thus protecting the organism. &lt;br /&gt;
&lt;br /&gt;
== Structure ==&lt;br /&gt;
The c-myc protein contains two specific regions that characterize them as transcription factors: a carboxy-terminal basix helix-loop-helix leucine zipper motif and an amino terminal transactivation domain&amp;lt;ref&amp;gt;PMID:8193530&amp;lt;/ref&amp;gt;. Immediatley following the basic region within the c-myc protein is the helix -loop-helix motif which has been shown to interact with DNA through binding &amp;lt;ref&amp;gt;PMID:8193530&amp;lt;/ref&amp;gt;. The c-myc gene is essientially found on human chromosome 8q24 and contains three exons. &lt;br /&gt;
&lt;br /&gt;
== Medical Uses and Therapeutic Opportunities ==&lt;br /&gt;
&lt;br /&gt;
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== References ==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Nishika Patel</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_452&amp;diff=1381679</id>
		<title>Sandbox Reserved 452</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_452&amp;diff=1381679"/>
		<updated>2012-04-27T01:56:16Z</updated>

		<summary type="html">&lt;p&gt;Nishika Patel: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;== C-Myc ==&lt;br /&gt;
&lt;br /&gt;
&amp;lt;Structure load=&#039;1A93&#039; size=&#039;500&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;Insert caption here&#039; scene=&#039;Insert optional scene name here&#039; /&amp;gt;&lt;br /&gt;
{{STRUCTURE_1A93| PDB=1A93 | SCENE= }}&lt;br /&gt;
&lt;br /&gt;
THIS IS THE &amp;lt;scene name=&#039;Sandbox_Reserved_452/1a93_active_site/4&#039;&amp;gt;active site&amp;lt;/scene&amp;gt; OF YOUR PROTEIN.  &lt;br /&gt;
&lt;br /&gt;
THIS SHOWS THE &amp;lt;scene name=&#039;Sandbox_Reserved_452/Disulfide_bond/1&#039;&amp;gt;disulfide bond&amp;lt;/scene&amp;gt; IN THE PROTEIN.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
--&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Introduction ==&lt;br /&gt;
C-Myc is a [http://en.wikipedia.org/wiki/Transcription_factor transcription factor] involved in the [http://en.wikipedia.org/wiki/Cell_cycle cell cycle] specifically with the stimulation of cell proliferation but is also involved in the regulation of [http://en.wikipedia.org/wiki/Apoptosis apoptosis], [http://en.wikipedia.org/wiki/Cell_differentiation cell differentiation], cell competition, and [http://en.wikipedia.org/wiki/Senescence senescence] &amp;lt;ref&amp;gt;PMID:22510570&amp;lt;/ref&amp;gt;. C-Myc is a [http://en.wikipedia.org/wiki/DNA-binding_protein DNA binding protein] and functions primarily by inducing transcription through the formation of [http://en.wikipedia.org/wiki/Protein_dimer heterodimers] primarily with [http://en.wikipedia.org/wiki/MAX_(gene) Max proteins]. C-Myc&#039;s interactions are not limited to only Max protiens as it has been shown to interact with [http://en.wikipedia.org/wiki/BRCA1 BRCA1]&amp;lt;ref&amp;gt;PMID:9788437&amp;lt;/ref&amp;gt;, [http://en.wikipedia.org/wiki/Mapk1 MAPK1]&amp;lt;ref&amp;gt;PMID: 7957875&amp;lt;/ref&amp;gt;, [http://en.wikipedia.org/wiki/P73 p73]&amp;lt;ref&amp;gt;PMID:11844794&amp;lt;/ref&amp;gt;, and many more. C-Myc is also a [http://en.wikipedia.org/wiki/Oncogene protooncogene], and when normally expressed is strictly regulated by signals within the cell cycle, so that when a cell is resting its c-myc expression is little while when growing it expresses high levels of c-myc. When normal cells overexpression of c-myc activates a protection pathway and the abnormal cells are thus eliminated from the host organism through apoptosis, thus protecting the organism. &lt;br /&gt;
&lt;br /&gt;
== Structure ==&lt;br /&gt;
The c-myc protein contains two specific regions that characterize them as transcription factors: a carboxy-terminal basix helix-loop-helix leucine zipper motif and an amino terminal transactivation domain&amp;lt;ref&amp;gt;PMID:8193530&amp;lt;/ref&amp;gt;. Immediatley following the basic region within the c-myc protein is the helix -loop-helix motif which has been shown to interact with DNA through binding &amp;lt;ref&amp;gt;PMID:8193530&amp;lt;/ref&amp;gt;. The c-myc gene is essientially found on human chromosome 8q24 and contains three exons. &lt;br /&gt;
&lt;br /&gt;
== Medical Uses and Therapeutic Opportunities ==&lt;br /&gt;
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&lt;br /&gt;
== References ==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Nishika Patel</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_452&amp;diff=1381677</id>
		<title>Sandbox Reserved 452</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_452&amp;diff=1381677"/>
		<updated>2012-04-27T01:52:51Z</updated>

		<summary type="html">&lt;p&gt;Nishika Patel: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;== C-Myc ==&lt;br /&gt;
&lt;br /&gt;
&amp;lt;Structure load=&#039;1A93&#039; size=&#039;500&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;Insert caption here&#039; scene=&#039;Insert optional scene name here&#039; /&amp;gt;&lt;br /&gt;
{{STRUCTURE_1A93| PDB=1A93 | SCENE= }}&lt;br /&gt;
&lt;br /&gt;
THIS IS THE &amp;lt;scene name=&#039;Sandbox_Reserved_452/1a93_active_site/4&#039;&amp;gt;active site&amp;lt;/scene&amp;gt; OF YOUR PROTEIN.  &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
--&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Introduction ==&lt;br /&gt;
C-Myc is a [http://en.wikipedia.org/wiki/Transcription_factor transcription factor] involved in the [http://en.wikipedia.org/wiki/Cell_cycle cell cycle] specifically with the stimulation of cell proliferation but is also involved in the regulation of [http://en.wikipedia.org/wiki/Apoptosis apoptosis], [http://en.wikipedia.org/wiki/Cell_differentiation cell differentiation], cell competition, and [http://en.wikipedia.org/wiki/Senescence senescence] &amp;lt;ref&amp;gt;PMID:22510570&amp;lt;/ref&amp;gt;. C-Myc is a [http://en.wikipedia.org/wiki/DNA-binding_protein DNA binding protein] and functions primarily by inducing transcription through the formation of [http://en.wikipedia.org/wiki/Protein_dimer heterodimers] primarily with [http://en.wikipedia.org/wiki/MAX_(gene) Max proteins]. C-Myc&#039;s interactions are not limited to only Max protiens as it has been shown to interact with [http://en.wikipedia.org/wiki/BRCA1 BRCA1]&amp;lt;ref&amp;gt;PMID:9788437&amp;lt;/ref&amp;gt;, [http://en.wikipedia.org/wiki/Mapk1 MAPK1]&amp;lt;ref&amp;gt;PMID: 7957875&amp;lt;/ref&amp;gt;, [http://en.wikipedia.org/wiki/P73 p73]&amp;lt;ref&amp;gt;PMID:11844794&amp;lt;/ref&amp;gt;, and many more. C-Myc is also a [http://en.wikipedia.org/wiki/Oncogene protooncogene], and when normally expressed is strictly regulated by signals within the cell cycle, so that when a cell is resting its c-myc expression is little while when growing it expresses high levels of c-myc. When normal cells overexpression of c-myc activates a protection pathway and the abnormal cells are thus eliminated from the host organism through apoptosis, thus protecting the organism. &lt;br /&gt;
&lt;br /&gt;
== Structure ==&lt;br /&gt;
The c-myc protein contains two specific regions that characterize them as transcription factors: a carboxy-terminal basix helix-loop-helix leucine zipper motif and an amino terminal transactivation domain&amp;lt;ref&amp;gt;PMID:8193530&amp;lt;/ref&amp;gt;. Immediatley following the basic region within the c-myc protein is the helix -loop-helix motif which has been shown to interact with DNA through binding &amp;lt;ref&amp;gt;PMID:8193530&amp;lt;/ref&amp;gt;. The c-myc gene is essientially found on human chromosome 8q24 and contains three exons. &lt;br /&gt;
&lt;br /&gt;
== Medical Uses and Therapeutic Opportunities ==&lt;br /&gt;
&lt;br /&gt;
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== References ==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Nishika Patel</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_452&amp;diff=1381675</id>
		<title>Sandbox Reserved 452</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_452&amp;diff=1381675"/>
		<updated>2012-04-27T01:49:45Z</updated>

		<summary type="html">&lt;p&gt;Nishika Patel: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;== C-Myc ==&lt;br /&gt;
&lt;br /&gt;
&amp;lt;Structure load=&#039;1A93&#039; size=&#039;500&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;Insert caption here&#039; scene=&#039;Insert optional scene name here&#039; /&amp;gt;&lt;br /&gt;
{{STRUCTURE_1A93| PDB=1A93 | SCENE= }}&lt;br /&gt;
&lt;br /&gt;
THIS IS THE &amp;lt;scene name=&#039;Sandbox_Reserved_452/1a93_active_site/3&#039;&amp;gt;active site&amp;lt;/scene&amp;gt; OF YOUR PROTEIN.  &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
--&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Introduction ==&lt;br /&gt;
C-Myc is a [http://en.wikipedia.org/wiki/Transcription_factor transcription factor] involved in the [http://en.wikipedia.org/wiki/Cell_cycle cell cycle] specifically with the stimulation of cell proliferation but is also involved in the regulation of [http://en.wikipedia.org/wiki/Apoptosis apoptosis], [http://en.wikipedia.org/wiki/Cell_differentiation cell differentiation], cell competition, and [http://en.wikipedia.org/wiki/Senescence senescence] &amp;lt;ref&amp;gt;PMID:22510570&amp;lt;/ref&amp;gt;. C-Myc is a [http://en.wikipedia.org/wiki/DNA-binding_protein DNA binding protein] and functions primarily by inducing transcription through the formation of [http://en.wikipedia.org/wiki/Protein_dimer heterodimers] primarily with [http://en.wikipedia.org/wiki/MAX_(gene) Max proteins]. C-Myc&#039;s interactions are not limited to only Max protiens as it has been shown to interact with [http://en.wikipedia.org/wiki/BRCA1 BRCA1]&amp;lt;ref&amp;gt;PMID:9788437&amp;lt;/ref&amp;gt;, [http://en.wikipedia.org/wiki/Mapk1 MAPK1]&amp;lt;ref&amp;gt;PMID: 7957875&amp;lt;/ref&amp;gt;, [http://en.wikipedia.org/wiki/P73 p73]&amp;lt;ref&amp;gt;PMID:11844794&amp;lt;/ref&amp;gt;, and many more. C-Myc is also a [http://en.wikipedia.org/wiki/Oncogene protooncogene], and when normally expressed is strictly regulated by signals within the cell cycle, so that when a cell is resting its c-myc expression is little while when growing it expresses high levels of c-myc. When normal cells overexpression of c-myc activates a protection pathway and the abnormal cells are thus eliminated from the host organism through apoptosis, thus protecting the organism. &lt;br /&gt;
&lt;br /&gt;
== Structure ==&lt;br /&gt;
The c-myc protein contains two specific regions that characterize them as transcription factors: a carboxy-terminal basix helix-loop-helix leucine zipper motif and an amino terminal transactivation domain&amp;lt;ref&amp;gt;PMID:8193530&amp;lt;/ref&amp;gt;. Immediatley following the basic region within the c-myc protein is the helix -loop-helix motif which has been shown to interact with DNA through binding &amp;lt;ref&amp;gt;PMID:8193530&amp;lt;/ref&amp;gt;. The c-myc gene is essientially found on human chromosome 8q24 and contains three exons. &lt;br /&gt;
&lt;br /&gt;
== Medical Uses and Therapeutic Opportunities ==&lt;br /&gt;
&lt;br /&gt;
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== References ==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Nishika Patel</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_452&amp;diff=1381673</id>
		<title>Sandbox Reserved 452</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_452&amp;diff=1381673"/>
		<updated>2012-04-27T01:45:31Z</updated>

		<summary type="html">&lt;p&gt;Nishika Patel: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;== C-Myc ==&lt;br /&gt;
&lt;br /&gt;
&amp;lt;Structure load=&#039;1A93&#039; size=&#039;500&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;Insert caption here&#039; scene=&#039;Insert optional scene name here&#039; /&amp;gt;&lt;br /&gt;
{{STRUCTURE_1A93| PDB=1A93 | SCENE= }}&lt;br /&gt;
&lt;br /&gt;
THIS IS THE &amp;lt;scene name=&#039;Sandbox_Reserved_452/1a93_active_site/1&#039;&amp;gt;active site&amp;lt;/scene&amp;gt; OF YOUR PROTEIN.  &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
--&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== Introduction ==&lt;br /&gt;
C-Myc is a [http://en.wikipedia.org/wiki/Transcription_factor transcription factor] involved in the [http://en.wikipedia.org/wiki/Cell_cycle cell cycle] specifically with the stimulation of cell proliferation but is also involved in the regulation of [http://en.wikipedia.org/wiki/Apoptosis apoptosis], [http://en.wikipedia.org/wiki/Cell_differentiation cell differentiation], cell competition, and [http://en.wikipedia.org/wiki/Senescence senescence] &amp;lt;ref&amp;gt;PMID:22510570&amp;lt;/ref&amp;gt;. C-Myc is a [http://en.wikipedia.org/wiki/DNA-binding_protein DNA binding protein] and functions primarily by inducing transcription through the formation of [http://en.wikipedia.org/wiki/Protein_dimer heterodimers] primarily with [http://en.wikipedia.org/wiki/MAX_(gene) Max proteins]. C-Myc&#039;s interactions are not limited to only Max protiens as it has been shown to interact with [http://en.wikipedia.org/wiki/BRCA1 BRCA1]&amp;lt;ref&amp;gt;PMID:9788437&amp;lt;/ref&amp;gt;, [http://en.wikipedia.org/wiki/Mapk1 MAPK1]&amp;lt;ref&amp;gt;PMID: 7957875&amp;lt;/ref&amp;gt;, [http://en.wikipedia.org/wiki/P73 p73]&amp;lt;ref&amp;gt;PMID:11844794&amp;lt;/ref&amp;gt;, and many more. C-Myc is also a [http://en.wikipedia.org/wiki/Oncogene protooncogene], and when normally expressed is strictly regulated by signals within the cell cycle, so that when a cell is resting its c-myc expression is little while when growing it expresses high levels of c-myc. When normal cells overexpression of c-myc activates a protection pathway and the abnormal cells are thus eliminated from the host organism through apoptosis, thus protecting the organism. &lt;br /&gt;
&lt;br /&gt;
== Structure ==&lt;br /&gt;
The c-myc protein contains two specific regions that characterize them as transcription factors: a carboxy-terminal basix helix-loop-helix leucine zipper motif and an amino terminal transactivation domain&amp;lt;ref&amp;gt;PMID:8193530&amp;lt;/ref&amp;gt;. Immediatley following the basic region within the c-myc protein is the helix -loop-helix motif which has been shown to interact with DNA through binding &amp;lt;ref&amp;gt;PMID:8193530&amp;lt;/ref&amp;gt;. The c-myc gene is essientially found on human chromosome 8q24 and contains three exons. &lt;br /&gt;
&lt;br /&gt;
== Medical Uses and Therapeutic Opportunities ==&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
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== References ==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Nishika Patel</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_479&amp;diff=1381641</id>
		<title>Sandbox Reserved 479</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_479&amp;diff=1381641"/>
		<updated>2012-04-27T00:01:12Z</updated>

		<summary type="html">&lt;p&gt;Nishika Patel: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Sandbox_Reserved_Robert_B_Rose_1}}&lt;br /&gt;
&amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Myosin&#039;&#039;&#039; is comprised of 35 different classes of motor proteins, and is universal in all eukaryotic cells.&amp;lt;ref name=&amp;quot;Varkuti&amp;quot;&amp;gt;PMID: 22343723&amp;lt;/ref&amp;gt;  Myosin II is the more well known form of myosin; it acts in complex with [[actin]] to create a powerstroke and cause muscular contraction and relaxation.&amp;lt;ref name=&lt;br /&gt;
&amp;quot;Ruppel&amp;quot;&amp;gt;PMID: 8862525&amp;lt;/ref&amp;gt;  Myosin is the contractile unit of a sarcomere.  Repeating units of sarcomeres make up a myofibril (muscle fiber), and bundles of fibers make up a skeletal muscle. The figure below (right) is a proteolytic fragment of myosin generated by papain digestion in &#039;&#039;Gallus gallus&#039;&#039; (chicken) bound to ligands &amp;lt;scene name=&#039;Sandbox_Reserved_479/2_mys_magnesium_ligand/2&#039;&amp;gt;magnesium&amp;lt;/scene&amp;gt; and &amp;lt;scene name=&#039;Sandbox_Reserved_479/2_mys_sulfate_ion/1&#039;&amp;gt;sulfate ion&amp;lt;/scene&amp;gt;.&lt;br /&gt;
{{STRUCTURE_2mys| PDB=2mys | SCENE= }}&lt;br /&gt;
&lt;br /&gt;
==Structure==&lt;br /&gt;
&lt;br /&gt;
Myosin is a 520 kDa hexamer, or a &#039;&#039;&#039;hexa-oligomer&#039;&#039;&#039; (6 subunit) structure.  It is comprised of two heavy chains (weighing 220 kDa each) and 4 light chains (weighing 20 kDa each).&amp;lt;ref name=&amp;quot;CHEM43&amp;quot;&amp;gt;[http://www.cs.stedwards.edu/chem/Chemistry/CHEM43/CHEM43/Myosin/STRUCT~1.HTM]&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
====Secondary Structure====&lt;br /&gt;
&lt;br /&gt;
The N-terminal comprises a globular head in the heavy chains, and the C-terminal ends with an alpha helix.  The globular head region is also known as S1 (actin-binding site and nucleotide-binding site), and also contains mostly alpha-helices that are critical to maintaining structure.  The C-terminal end contains interspersed hydrophobic regions that give rise to a &amp;quot;coiled coil&amp;quot; structure.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
====Active Site====&lt;br /&gt;
&lt;br /&gt;
The actin-binding, &amp;lt;scene name=&#039;Sandbox_Reserved_479/2mys_active_site/1&#039;&amp;gt;catalytic site&amp;lt;/scene&amp;gt; of myosin is known as S1 (subfragment 1).  This is the amino-terminal globular head portion of the myosin molecule.  The S1 head is divided into three subdomains: the NH2-terminal 25 kDa region, a central 50 kDa region, and the COOH-terminal 20 kDa region.  Further analysis of the S1 active site of myosin suggests that the γ-phosphate (of ATP) binds near the apex of the 50 kDa cleft.  It is believed to be a region critical to function, because of the presence of evolutionarily conserved residues along the central cleft.&amp;lt;ref name=&amp;quot;Ruppel&amp;quot; /&amp;gt;  The actin-binding site and nucleotide-binding site, although dominated by alpha-helices, also contains a straightened section with two cysteine residues.  The can form a disulfide bond in the presence of a nucleotide that prevents ADP from leaving the active site.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
====X-Ray Crystallography and Diffraction====&lt;br /&gt;
&lt;br /&gt;
It was not until recently that crystal structures could be used to analyze myosin and it&#039;s role in the actinomysin chemomechanical cycle.  X-ray diffraction studies have been conducted on whole muscles and muscle fibers to learn how structural changes promote and facilitate motor activity.  Movement of myosin was analyzed under near physiological conditions using modern synchrotron radiation sources.  Structural alterations were created through use of unique time and spatial resolution.  Muscle cells exhibit low scattering power in X-ray images, so a clear crystalline structure cannot not form.  A flat detector is needed because reflections are concentrated in the low angle regions.  Snychrotron radiation generates a monochromatic X-ray breams of diameter 0.2-0.3 mm, similar to that of the muscle fiber, and making high resolution images and video of a single muscle cell possible.&amp;lt;ref name=&amp;quot;Koubassova&amp;quot;&amp;gt;PMID: 22339600&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==Mechanism of Action==&lt;br /&gt;
&lt;br /&gt;
Myosin plays a role in the universal mechanism known as the actinomysin chemomechanical cycle.  Actin binds and releases myosin, causing the myosin lever to interact and relax in a cyclic manner.&amp;lt;ref name=&amp;quot;Varkuti&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
[[Image:picture 1.png]]&lt;br /&gt;
# ATP binds to S1 causing Actin to disassociate out of it&#039;s rigor complex (between actin and the S1 catalytic site on myosin)&lt;br /&gt;
# S1 causes the hydolysis of ATP to ADP and Pi&lt;br /&gt;
# Actin interacts with the S1-ADP-Pi complex and Pi is released&lt;br /&gt;
# S1 catalytic site&#039;s affinity for actin increases and the Actin-S1-ADP forms&lt;br /&gt;
# ADP is released, causing actin and myosin to again enter into the tightly bound rigor complex&amp;lt;ref name=&amp;quot;Ruppel&amp;quot; /&amp;gt;&amp;lt;ref name=&amp;quot;Koubassova&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==Medical Implications and Possible Applications==&lt;br /&gt;
&lt;br /&gt;
The discovery of myosin structure served as a crucial component in understanding the causes of many health related problems.  Dysfunctional myosin mutations have been linked to hypertrophy in the heart.  The heart enlarges to compensate for inadequate cardiac muscle contractions and consequent poor blood circulation.  Also, blood platelet contractile protein aggregation and secretion is impeded by faulty myosin in patients suffering from idiopathic scoliosis.  A defect in the less-well known myosin VIIA causes Usher 1B syndrome; causing a loss of sight and hearing impairments.  Further research will hopefully give more insight into the unknown causes of other diseases and disorders linked to myosin protein mutations.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==References==&lt;br /&gt;
&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Nishika Patel</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_479&amp;diff=1381632</id>
		<title>Sandbox Reserved 479</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_479&amp;diff=1381632"/>
		<updated>2012-04-26T23:51:24Z</updated>

		<summary type="html">&lt;p&gt;Nishika Patel: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Sandbox_Reserved_Robert_B_Rose_1}}&lt;br /&gt;
&amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Myosin&#039;&#039;&#039; is comprised of 35 different classes of motor proteins, and is universal in all eukaryotic cells.&amp;lt;ref name=&amp;quot;Varkuti&amp;quot;&amp;gt;PMID: 22343723&amp;lt;/ref&amp;gt;  Myosin II is the more well known form of myosin; it acts in complex with [[actin]] to create a powerstroke and cause muscular contraction and relaxation.&amp;lt;ref name=&lt;br /&gt;
&amp;quot;Ruppel&amp;quot;&amp;gt;PMID: 8862525&amp;lt;/ref&amp;gt;  Myosin is the contractile unit of a sarcomere.  Repeating units of sarcomeres make up a myofibril (muscle fiber), and bundles of fibers make up a skeletal muscle. The figure below (right) is a proteolytic fragment of myosin generated by papain digestion in &#039;&#039;Gallus gallus&#039;&#039; (chicken) bound to ligands &amp;lt;scene name=&#039;Sandbox_Reserved_479/2_mys_magnesium_ligand/2&#039;&amp;gt;magnesium&amp;lt;/scene&amp;gt; and &amp;lt;scene name=&#039;Sandbox_Reserved_479/2_mys_sulfate_ion/1&#039;&amp;gt;sulfate ion&amp;lt;/scene&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
{{STRUCTURE_2mys| PDB=2mys | SCENE= }}&lt;br /&gt;
&lt;br /&gt;
==Structure==&lt;br /&gt;
&lt;br /&gt;
Myosin is a 520 kDa hexamer, or a &#039;&#039;&#039;hexa-oligomer&#039;&#039;&#039; (6 subunit) structure.  It is comprised of two heavy chains (weighing 220 kDa each) and 4 light chains (weighing 20 kDa each).&amp;lt;ref name=&amp;quot;CHEM43&amp;quot;&amp;gt;[http://www.cs.stedwards.edu/chem/Chemistry/CHEM43/CHEM43/Myosin/STRUCT~1.HTM]&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
====Secondary Structure====&lt;br /&gt;
&lt;br /&gt;
The N-terminal comprises a globular head in the heavy chains, and the C-terminal ends with an alpha helix.  The globular head region is also known as S1 (actin-binding site and nucleotide-binding site), and also contains mostly alpha-helices that are critical to maintaining structure.  The C-terminal end contains interspersed hydrophobic regions that give rise to a &amp;quot;coiled coil&amp;quot; structure.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
====Active Site====&lt;br /&gt;
&lt;br /&gt;
The actin-binding, &amp;lt;scene name=&#039;Sandbox_Reserved_479/2mys_active_site/1&#039;&amp;gt;catalytic site&amp;lt;/scene&amp;gt; of myosin is known as S1 (subfragment 1).  This is the amino-terminal globular head portion of the myosin molecule.  The S1 head is divided into three subdomains: the NH2-terminal 25 kDa region, a central 50 kDa region, and the COOH-terminal 20 kDa region.  Further analysis of the S1 active site of myosin suggests that the γ-phosphate (of ATP) binds near the apex of the 50 kDa cleft.  It is believed to be a region critical to function, because of the presence of evolutionarily conserved residues along the central cleft.&amp;lt;ref name=&amp;quot;Ruppel&amp;quot; /&amp;gt;  The actin-binding site and nucleotide-binding site, although dominated by alpha-helices, also contains a straightened section with two cysteine residues.  The can form a disulfide bond in the presence of a nucleotide that prevents ADP from leaving the active site.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
====X-Ray Crystallography and Diffraction====&lt;br /&gt;
&lt;br /&gt;
It was not until recently that crystal structures could be used to analyze myosin and it&#039;s role in the actinomysin chemomechanical cycle.  X-ray diffraction studies have been conducted on whole muscles and muscle fibers to learn how structural changes promote and facilitate motor activity.  Movement of myosin was analyzed under near physiological conditions using modern synchrotron radiation sources.  Structural alterations were created through use of unique time and spatial resolution.  Muscle cells exhibit low scattering power in X-ray images, so a clear crystalline structure cannot not form.  A flat detector is needed because reflections are concentrated in the low angle regions.  Snychrotron radiation generates a monochromatic X-ray breams of diameter 0.2-0.3 mm, similar to that of the muscle fiber, and making high resolution images and video of a single muscle cell possible.&amp;lt;ref name=&amp;quot;Koubassova&amp;quot;&amp;gt;PMID: 22339600&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==Mechanism of Action==&lt;br /&gt;
&lt;br /&gt;
Myosin plays a role in the universal mechanism known as the actinomysin chemomechanical cycle.  Actin binds and releases myosin, causing the myosin lever to interact and relax in a cyclic manner.&amp;lt;ref name=&amp;quot;Varkuti&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
[[Image:picture 1.png]]&lt;br /&gt;
# ATP binds to S1 causing Actin to disassociate out of it&#039;s rigor complex (between actin and the S1 catalytic site on myosin)&lt;br /&gt;
# S1 causes the hydolysis of ATP to ADP and Pi&lt;br /&gt;
# Actin interacts with the S1-ADP-Pi complex and Pi is released&lt;br /&gt;
# S1 catalytic site&#039;s affinity for actin increases and the Actin-S1-ADP forms&lt;br /&gt;
# ADP is released, causing actin and myosin to again enter into the tightly bound rigor complex&amp;lt;ref name=&amp;quot;Ruppel&amp;quot; /&amp;gt;&amp;lt;ref name=&amp;quot;Koubassova&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==Medical Implications and Possible Applications==&lt;br /&gt;
&lt;br /&gt;
The discovery of myosin structure served as a crucial component in understanding the causes of many health related problems.  Dysfunctional myosin mutations have been linked to hypertrophy in the heart.  The heart enlarges to compensate for inadequate cardiac muscle contractions and consequent poor blood circulation.  Also, blood platelet contractile protein aggregation and secretion is impeded by faulty myosin in patients suffering from idiopathic scoliosis.  A defect in the less-well known myosin VIIA causes Usher 1B syndrome; causing a loss of sight and hearing impairments.  Further research will hopefully give more insight into the unknown causes of other diseases and disorders linked to myosin protein mutations.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==References==&lt;br /&gt;
&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Nishika Patel</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_479&amp;diff=1381625</id>
		<title>Sandbox Reserved 479</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_479&amp;diff=1381625"/>
		<updated>2012-04-26T23:44:10Z</updated>

		<summary type="html">&lt;p&gt;Nishika Patel: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Sandbox_Reserved_Robert_B_Rose_1}}&lt;br /&gt;
&amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Myosin&#039;&#039;&#039; is comprised of 35 different classes of motor proteins, and is universal in all eukaryotic cells.&amp;lt;ref name=&amp;quot;Varkuti&amp;quot;&amp;gt;PMID: 22343723&amp;lt;/ref&amp;gt;  Myosin II is the more well known form of myosin; it acts in complex with [[actin]] to create a powerstroke and cause muscular contraction and relaxation.&amp;lt;ref name=&lt;br /&gt;
&amp;quot;Ruppel&amp;quot;&amp;gt;PMID: 8862525&amp;lt;/ref&amp;gt;  Myosin is the contractile unit of a sarcomere.  Repeating units of sarcomeres make up a myofibril (muscle fiber), and bundles of fibers make up a skeletal muscle. The figure below (right) is a proteolytic fragment of myosin generated by papain digestion in &#039;&#039;Gallus gallus&#039;&#039; (chicken) bound to ligands &amp;lt;scene name=&#039;Sandbox_Reserved_479/2_mys_magnesium_ligand/2&#039;&amp;gt;magnesium&amp;lt;/scene&amp;gt; and &amp;lt;scene name=&#039;Sandbox_Reserved_479/2_mys_sulfate_ion/1&#039;&amp;gt;sulfate ion&amp;lt;/scene&amp;gt;.&lt;br /&gt;
 &lt;br /&gt;
{{STRUCTURE_2mys| PDB=2mys | SCENE= }}&lt;br /&gt;
&lt;br /&gt;
==Structure==&lt;br /&gt;
&lt;br /&gt;
Myosin is a 520 kDa hexamer, or a &#039;&#039;&#039;hexa-oligomer&#039;&#039;&#039; (6 subunit) structure.  It is comprised of two heavy chains (weighing 220 kDa each) and 4 light chains (weighing 20 kDa each).&amp;lt;ref name=&amp;quot;CHEM43&amp;quot;&amp;gt;[http://www.cs.stedwards.edu/chem/Chemistry/CHEM43/CHEM43/Myosin/STRUCT~1.HTM]&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
====Secondary Structure====&lt;br /&gt;
&lt;br /&gt;
The N-terminal comprises a globular head in the heavy chains, and the C-terminal ends with an alpha helix.  The globular head region is also known as S1 (actin-binding site and nucleotide-binding site), and also contains mostly alpha-helices that are critical to maintaining structure.  The C-terminal end contains interspersed hydrophobic regions that give rise to a &amp;quot;coiled coil&amp;quot; structure.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
====Active Site====&lt;br /&gt;
&lt;br /&gt;
The actin-binding, &amp;lt;scene name=&#039;Sandbox_Reserved_479/2mys_active_site/1&#039;&amp;gt;catalytic site&amp;lt;/scene&amp;gt; of myosin is known as S1 (subfragment 1).  This is the amino-terminal globular head portion of the myosin molecule.  The S1 head is divided into three subdomains: the NH2-terminal 25 kDa region, a central 50 kDa region, and the COOH-terminal 20 kDa region.  Further analysis of the S1 active site of myosin suggests that the γ-phosphate (of ATP) binds near the apex of the 50 kDa cleft.  It is believed to be a region critical to function, because of the presence of evolutionarily conserved residues along the central cleft.&amp;lt;ref name=&amp;quot;Ruppel&amp;quot; /&amp;gt;  The actin-binding site and nucleotide-binding site, although dominated by alpha-helices, also contains a straightened section with two cysteine residues.  The can form a disulfide bond in the presence of a nucleotide that prevents ADP from leaving the active site.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
====X-Ray Crystallography and Diffraction====&lt;br /&gt;
&lt;br /&gt;
It was not until recently that crystal structures could be used to analyze myosin and it&#039;s role in the actinomysin chemomechanical cycle.  X-ray diffraction studies have been conducted on whole muscles and muscle fibers to learn how structural changes promote and facilitate motor activity.  Movement of myosin was analyzed under near physiological conditions using modern synchrotron radiation sources.  Structural alterations were created through use of unique time and spatial resolution.  Muscle cells exhibit low scattering power in X-ray images, so a clear crystalline structure cannot not form.  A flat detector is needed because reflections are concentrated in the low angle regions.  Snychrotron radiation generates a monochromatic X-ray breams of diameter 0.2-0.3 mm, similar to that of the muscle fiber, and making high resolution images and video of a single muscle cell possible.&amp;lt;ref name=&amp;quot;Koubassova&amp;quot;&amp;gt;PMID: 22339600&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==Mechanism of Action==&lt;br /&gt;
&lt;br /&gt;
Myosin plays a role in the universal mechanism known as the actinomysin chemomechanical cycle.  Actin binds and releases myosin, causing the myosin lever to interact and relax in a cyclic manner.&amp;lt;ref name=&amp;quot;Varkuti&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
[[Image:picture 1.png]]&lt;br /&gt;
# ATP binds to S1 causing Actin to disassociate out of it&#039;s rigor complex (between actin and the S1 catalytic site on myosin)&lt;br /&gt;
# S1 causes the hydolysis of ATP to ADP and Pi&lt;br /&gt;
# Actin interacts with the S1-ADP-Pi complex and Pi is released&lt;br /&gt;
# S1 catalytic site&#039;s affinity for actin increases and the Actin-S1-ADP forms&lt;br /&gt;
# ADP is released, causing actin and myosin to again enter into the tightly bound rigor complex&amp;lt;ref name=&amp;quot;Ruppel&amp;quot; /&amp;gt;&amp;lt;ref name=&amp;quot;Koubassova&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==Medical Implications and Possible Applications==&lt;br /&gt;
&lt;br /&gt;
The discovery of myosin structure served as a crucial component in understanding the causes of many health related problems.  Dysfunctional myosin mutations have been linked to hypertrophy in the heart.  The heart enlarges to compensate for inadequate cardiac muscle contractions and consequent poor blood circulation.  Also, blood platelet contractile protein aggregation and secretion is impeded by faulty myosin in patients suffering from idiopathic scoliosis.  A defect in the less-well known myosin VIIA causes Usher 1B syndrome; causing a loss of sight and hearing impairments.  Further research will hopefully give more insight into the unknown causes of other diseases and disorders linked to myosin protein mutations.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==References==&lt;br /&gt;
&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Nishika Patel</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_479&amp;diff=1381623</id>
		<title>Sandbox Reserved 479</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_479&amp;diff=1381623"/>
		<updated>2012-04-26T23:39:31Z</updated>

		<summary type="html">&lt;p&gt;Nishika Patel: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Sandbox_Reserved_Robert_B_Rose_1}}&lt;br /&gt;
&amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Myosin&#039;&#039;&#039; is comprised of 35 different classes of motor proteins, and is universal in all eukaryotic cells.&amp;lt;ref name=&amp;quot;Varkuti&amp;quot;&amp;gt;PMID: 22343723&amp;lt;/ref&amp;gt;  Myosin II is the more well known form of myosin; it acts in complex with [[actin]] to create a powerstroke and cause muscular contraction and relaxation.&amp;lt;ref name=&lt;br /&gt;
&amp;quot;Ruppel&amp;quot;&amp;gt;PMID: 8862525&amp;lt;/ref&amp;gt;  Myosin is the contractile unit of a sarcomere.  Repeating units of sarcomeres make up a myofibril (muscle fiber), and bundles of fibers make up a skeletal muscle. &lt;br /&gt;
 &lt;br /&gt;
{{STRUCTURE_2mys| PDB=2mys | SCENE= }}&lt;br /&gt;
Proteolytic fragment of myosin generated by papain digestion in &#039;&#039;Gallus gallus&#039;&#039; (chicken) bound to ligands &amp;lt;scene name=&#039;Sandbox_Reserved_479/2_mys_magnesium_ligand/2&#039;&amp;gt;magnesium&amp;lt;/scene&amp;gt; and &amp;lt;scene name=&#039;Sandbox_Reserved_479/2_mys_sulfate_ion/1&#039;&amp;gt;sulfate ion&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==Structure==&lt;br /&gt;
&lt;br /&gt;
Myosin is a 520 kDa hexamer, or a &#039;&#039;&#039;hexa-oligomer&#039;&#039;&#039; (6 subunit) structure.  It is comprised of two heavy chains (weighing 220 kDa each) and 4 light chains (weighing 20 kDa each).&amp;lt;ref name=&amp;quot;CHEM43&amp;quot;&amp;gt;[http://www.cs.stedwards.edu/chem/Chemistry/CHEM43/CHEM43/Myosin/STRUCT~1.HTM]&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
====Secondary Structure====&lt;br /&gt;
&lt;br /&gt;
The N-terminal comprises a globular head in the heavy chains, and the C-terminal ends with an alpha helix.  The globular head region is also known as S1 (actin-binding site and nucleotide-binding site), and also contains mostly alpha-helices that are critical to maintaining structure.  The C-terminal end contains interspersed hydrophobic regions that give rise to a &amp;quot;coiled coil&amp;quot; structure.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
====Active Site====&lt;br /&gt;
&lt;br /&gt;
The actin-binding, &amp;lt;scene name=&#039;Sandbox_Reserved_479/2mys_active_site/1&#039;&amp;gt;catalytic site&amp;lt;/scene&amp;gt; of myosin is known as S1 (subfragment 1).  This is the amino-terminal globular head portion of the myosin molecule.  The S1 head is divided into three subdomains: the NH2-terminal 25 kDa region, a central 50 kDa region, and the COOH-terminal 20 kDa region.  Further analysis of the S1 active site of myosin suggests that the γ-phosphate (of ATP) binds near the apex of the 50 kDa cleft.  It is believed to be a region critical to function, because of the presence of evolutionarily conserved residues along the central cleft.&amp;lt;ref name=&amp;quot;Ruppel&amp;quot; /&amp;gt;  The actin-binding site and nucleotide-binding site, although dominated by alpha-helices, also contains a straightened section with two cysteine residues.  The can form a disulfide bond in the presence of a nucleotide that prevents ADP from leaving the active site.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
====X-Ray Crystallography and Diffraction====&lt;br /&gt;
&lt;br /&gt;
It was not until recently that crystal structures could be used to analyze myosin and it&#039;s role in the actinomysin chemomechanical cycle.  X-ray diffraction studies have been conducted on whole muscles and muscle fibers to learn how structural changes promote and facilitate motor activity.  Movement of myosin was analyzed under near physiological conditions using modern synchrotron radiation sources.  Structural alterations were created through use of unique time and spatial resolution.  Muscle cells exhibit low scattering power in X-ray images, so a clear crystalline structure cannot not form.  A flat detector is needed because reflections are concentrated in the low angle regions.  Snychrotron radiation generates a monochromatic X-ray breams of diameter 0.2-0.3 mm, similar to that of the muscle fiber, and making high resolution images and video of a single muscle cell possible.&amp;lt;ref name=&amp;quot;Koubassova&amp;quot;&amp;gt;PMID: 22339600&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==Mechanism of Action==&lt;br /&gt;
&lt;br /&gt;
Myosin plays a role in the universal mechanism known as the actinomysin chemomechanical cycle.  Actin binds and releases myosin, causing the myosin lever to interact and relax in a cyclic manner.&amp;lt;ref name=&amp;quot;Varkuti&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
[[Image:picture 1.png]]&lt;br /&gt;
# ATP binds to S1 causing Actin to disassociate out of it&#039;s rigor complex (between actin and the S1 catalytic site on myosin)&lt;br /&gt;
# S1 causes the hydolysis of ATP to ADP and Pi&lt;br /&gt;
# Actin interacts with the S1-ADP-Pi complex and Pi is released&lt;br /&gt;
# S1 catalytic site&#039;s affinity for actin increases and the Actin-S1-ADP forms&lt;br /&gt;
# ADP is released, causing actin and myosin to again enter into the tightly bound rigor complex&amp;lt;ref name=&amp;quot;Ruppel&amp;quot; /&amp;gt;&amp;lt;ref name=&amp;quot;Koubassova&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==Medical Implications and Possible Applications==&lt;br /&gt;
&lt;br /&gt;
The discovery of myosin structure served as a crucial component in understanding the causes of many health related problems.  Dysfunctional myosin mutations have been linked to hypertrophy in the heart.  The heart enlarges to compensate for inadequate cardiac muscle contractions and consequent poor blood circulation.  Also, blood platelet contractile protein aggregation and secretion is impeded by faulty myosin in patients suffering from idiopathic scoliosis.  A defect in the less-well known myosin VIIA causes Usher 1B syndrome; causing a loss of sight and hearing impairments.  Further research will hopefully give more insight into the unknown causes of other diseases and disorders linked to myosin protein mutations.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==References==&lt;br /&gt;
&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Nishika Patel</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_479&amp;diff=1381622</id>
		<title>Sandbox Reserved 479</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_479&amp;diff=1381622"/>
		<updated>2012-04-26T23:37:30Z</updated>

		<summary type="html">&lt;p&gt;Nishika Patel: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Sandbox_Reserved_Robert_B_Rose_1}}&lt;br /&gt;
&amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Myosin&#039;&#039;&#039; is comprised of 35 different classes of motor proteins, and is universal in all eukaryotic cells.&amp;lt;ref name=&amp;quot;Varkuti&amp;quot;&amp;gt;PMID: 22343723&amp;lt;/ref&amp;gt;  Myosin II is the more well known form of myosin; it acts in complex with [[actin]] to create a powerstroke and cause muscular contraction and relaxation.&amp;lt;ref name=&lt;br /&gt;
&amp;quot;Ruppel&amp;quot;&amp;gt;PMID: 8862525&amp;lt;/ref&amp;gt;  Myosin is the contractile unit of a sarcomere.  Repeating units of sarcomeres make up a myofibril (muscle fiber), and bundles of fibers make up a skeletal muscle. &lt;br /&gt;
 &lt;br /&gt;
&amp;lt;Structure load=&#039;2mys&#039; size=&#039;300&#039; frame=&#039;true&#039; align=&#039;left&#039; caption=&#039;Insert caption here&#039; scene=&#039;Proteolytic fragment of myosin generated by papain digestion in &#039;&#039;Gallus gallus&#039;&#039; (chicken) bound to ligands &amp;lt;scene name=&#039;Sandbox_Reserved_479/2_mys_magnesium_ligand/2&#039;&amp;gt;magnesium&amp;lt;/scene&amp;gt; and &amp;lt;scene name=&#039;Sandbox_Reserved_479/2_mys_sulfate_ion/1&#039;&amp;gt;sulfate ion&amp;lt;/scene&amp;gt;&#039; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
{{STRUCTURE_2mys| PDB=2mys | SCENE= }}&lt;br /&gt;
Proteolytic fragment of myosin generated by papain digestion in &#039;&#039;Gallus gallus&#039;&#039; (chicken) bound to ligands &amp;lt;scene name=&#039;Sandbox_Reserved_479/2_mys_magnesium_ligand/2&#039;&amp;gt;magnesium&amp;lt;/scene&amp;gt; and &amp;lt;scene name=&#039;Sandbox_Reserved_479/2_mys_sulfate_ion/1&#039;&amp;gt;sulfate ion&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==Structure==&lt;br /&gt;
&lt;br /&gt;
Myosin is a 520 kDa hexamer, or a &#039;&#039;&#039;hexa-oligomer&#039;&#039;&#039; (6 subunit) structure.  It is comprised of two heavy chains (weighing 220 kDa each) and 4 light chains (weighing 20 kDa each).&amp;lt;ref name=&amp;quot;CHEM43&amp;quot;&amp;gt;[http://www.cs.stedwards.edu/chem/Chemistry/CHEM43/CHEM43/Myosin/STRUCT~1.HTM]&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
====Secondary Structure====&lt;br /&gt;
&lt;br /&gt;
The N-terminal comprises a globular head in the heavy chains, and the C-terminal ends with an alpha helix.  The globular head region is also known as S1 (actin-binding site and nucleotide-binding site), and also contains mostly alpha-helices that are critical to maintaining structure.  The C-terminal end contains interspersed hydrophobic regions that give rise to a &amp;quot;coiled coil&amp;quot; structure.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
====Active Site====&lt;br /&gt;
&lt;br /&gt;
The actin-binding, &amp;lt;scene name=&#039;Sandbox_Reserved_479/2mys_active_site/1&#039;&amp;gt;catalytic site&amp;lt;/scene&amp;gt; of myosin is known as S1 (subfragment 1).  This is the amino-terminal globular head portion of the myosin molecule.  The S1 head is divided into three subdomains: the NH2-terminal 25 kDa region, a central 50 kDa region, and the COOH-terminal 20 kDa region.  Further analysis of the S1 active site of myosin suggests that the γ-phosphate (of ATP) binds near the apex of the 50 kDa cleft.  It is believed to be a region critical to function, because of the presence of evolutionarily conserved residues along the central cleft.&amp;lt;ref name=&amp;quot;Ruppel&amp;quot; /&amp;gt;  The actin-binding site and nucleotide-binding site, although dominated by alpha-helices, also contains a straightened section with two cysteine residues.  The can form a disulfide bond in the presence of a nucleotide that prevents ADP from leaving the active site.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
====X-Ray Crystallography and Diffraction====&lt;br /&gt;
&lt;br /&gt;
It was not until recently that crystal structures could be used to analyze myosin and it&#039;s role in the actinomysin chemomechanical cycle.  X-ray diffraction studies have been conducted on whole muscles and muscle fibers to learn how structural changes promote and facilitate motor activity.  Movement of myosin was analyzed under near physiological conditions using modern synchrotron radiation sources.  Structural alterations were created through use of unique time and spatial resolution.  Muscle cells exhibit low scattering power in X-ray images, so a clear crystalline structure cannot not form.  A flat detector is needed because reflections are concentrated in the low angle regions.  Snychrotron radiation generates a monochromatic X-ray breams of diameter 0.2-0.3 mm, similar to that of the muscle fiber, and making high resolution images and video of a single muscle cell possible.&amp;lt;ref name=&amp;quot;Koubassova&amp;quot;&amp;gt;PMID: 22339600&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==Mechanism of Action==&lt;br /&gt;
&lt;br /&gt;
Myosin plays a role in the universal mechanism known as the actinomysin chemomechanical cycle.  Actin binds and releases myosin, causing the myosin lever to interact and relax in a cyclic manner.&amp;lt;ref name=&amp;quot;Varkuti&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
[[Image:picture 1.png]]&lt;br /&gt;
# ATP binds to S1 causing Actin to disassociate out of it&#039;s rigor complex (between actin and the S1 catalytic site on myosin)&lt;br /&gt;
# S1 causes the hydolysis of ATP to ADP and Pi&lt;br /&gt;
# Actin interacts with the S1-ADP-Pi complex and Pi is released&lt;br /&gt;
# S1 catalytic site&#039;s affinity for actin increases and the Actin-S1-ADP forms&lt;br /&gt;
# ADP is released, causing actin and myosin to again enter into the tightly bound rigor complex&amp;lt;ref name=&amp;quot;Ruppel&amp;quot; /&amp;gt;&amp;lt;ref name=&amp;quot;Koubassova&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==Medical Implications and Possible Applications==&lt;br /&gt;
&lt;br /&gt;
The discovery of myosin structure served as a crucial component in understanding the causes of many health related problems.  Dysfunctional myosin mutations have been linked to hypertrophy in the heart.  The heart enlarges to compensate for inadequate cardiac muscle contractions and consequent poor blood circulation.  Also, blood platelet contractile protein aggregation and secretion is impeded by faulty myosin in patients suffering from idiopathic scoliosis.  A defect in the less-well known myosin VIIA causes Usher 1B syndrome; causing a loss of sight and hearing impairments.  Further research will hopefully give more insight into the unknown causes of other diseases and disorders linked to myosin protein mutations.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==References==&lt;br /&gt;
&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Nishika Patel</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Sandbox_Reserved_479&amp;diff=1381619</id>
		<title>Sandbox Reserved 479</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_Reserved_479&amp;diff=1381619"/>
		<updated>2012-04-26T23:33:01Z</updated>

		<summary type="html">&lt;p&gt;Nishika Patel: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;!-- PLEASE DO NOT DELETE THIS TEMPLATE --&amp;gt;&lt;br /&gt;
{{Sandbox_Reserved_Robert_B_Rose_1}}&lt;br /&gt;
&amp;lt;!-- PLEASE ADD YOUR CONTENT BELOW HERE --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Myosin&#039;&#039;&#039; is comprised of 35 different classes of motor proteins, and is universal in all eukaryotic cells.&amp;lt;ref name=&amp;quot;Varkuti&amp;quot;&amp;gt;PMID: 22343723&amp;lt;/ref&amp;gt;  Myosin II is the more well known form of myosin; it acts in complex with [[actin]] to create a powerstroke and cause muscular contraction and relaxation.&amp;lt;ref name=&lt;br /&gt;
&amp;quot;Ruppel&amp;quot;&amp;gt;PMID: 8862525&amp;lt;/ref&amp;gt;  Myosin is the contractile unit of a sarcomere.  Repeating units of sarcomeres make up a myofibril (muscle fiber), and bundles of fibers make up a skeletal muscle. &lt;br /&gt;
 &lt;br /&gt;
{{STRUCTURE_2mys| PDB=2mys | SCENE= }}&lt;br /&gt;
Proteolytic fragment of myosin generated by papain digestion in &#039;&#039;Gallus gallus&#039;&#039; (chicken) bound to ligands &amp;lt;scene name=&#039;Sandbox_Reserved_479/2_mys_magnesium_ligand/2&#039;&amp;gt;magnesium&amp;lt;/scene&amp;gt; and &amp;lt;scene name=&#039;Sandbox_Reserved_479/2_mys_sulfate_ion/1&#039;&amp;gt;sulfate ion&amp;lt;/scene&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==Structure==&lt;br /&gt;
&lt;br /&gt;
Myosin is a 520 kDa hexamer, or a &#039;&#039;&#039;hexa-oligomer&#039;&#039;&#039; (6 subunit) structure.  It is comprised of two heavy chains (weighing 220 kDa each) and 4 light chains (weighing 20 kDa each).&amp;lt;ref name=&amp;quot;CHEM43&amp;quot;&amp;gt;[http://www.cs.stedwards.edu/chem/Chemistry/CHEM43/CHEM43/Myosin/STRUCT~1.HTM]&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
====Secondary Structure====&lt;br /&gt;
&lt;br /&gt;
The N-terminal comprises a globular head in the heavy chains, and the C-terminal ends with an alpha helix.  The globular head region is also known as S1 (actin-binding site and nucleotide-binding site), and also contains mostly alpha-helices that are critical to maintaining structure.  The C-terminal end contains interspersed hydrophobic regions that give rise to a &amp;quot;coiled coil&amp;quot; structure.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
====Active Site====&lt;br /&gt;
&lt;br /&gt;
The actin-binding, &amp;lt;scene name=&#039;Sandbox_Reserved_479/2mys_active_site/1&#039;&amp;gt;catalytic site&amp;lt;/scene&amp;gt; of myosin is known as S1 (subfragment 1).  This is the amino-terminal globular head portion of the myosin molecule.  The S1 head is divided into three subdomains: the NH2-terminal 25 kDa region, a central 50 kDa region, and the COOH-terminal 20 kDa region.  Further analysis of the S1 active site of myosin suggests that the γ-phosphate (of ATP) binds near the apex of the 50 kDa cleft.  It is believed to be a region critical to function, because of the presence of evolutionarily conserved residues along the central cleft.&amp;lt;ref name=&amp;quot;Ruppel&amp;quot; /&amp;gt;  The actin-binding site and nucleotide-binding site, although dominated by alpha-helices, also contains a straightened section with two cysteine residues.  The can form a disulfide bond in the presence of a nucleotide that prevents ADP from leaving the active site.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
====X-Ray Crystallography and Diffraction====&lt;br /&gt;
&lt;br /&gt;
It was not until recently that crystal structures could be used to analyze myosin and it&#039;s role in the actinomysin chemomechanical cycle.  X-ray diffraction studies have been conducted on whole muscles and muscle fibers to learn how structural changes promote and facilitate motor activity.  Movement of myosin was analyzed under near physiological conditions using modern synchrotron radiation sources.  Structural alterations were created through use of unique time and spatial resolution.  Muscle cells exhibit low scattering power in X-ray images, so a clear crystalline structure cannot not form.  A flat detector is needed because reflections are concentrated in the low angle regions.  Snychrotron radiation generates a monochromatic X-ray breams of diameter 0.2-0.3 mm, similar to that of the muscle fiber, and making high resolution images and video of a single muscle cell possible.&amp;lt;ref name=&amp;quot;Koubassova&amp;quot;&amp;gt;PMID: 22339600&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==Mechanism of Action==&lt;br /&gt;
&lt;br /&gt;
Myosin plays a role in the universal mechanism known as the actinomysin chemomechanical cycle.  Actin binds and releases myosin, causing the myosin lever to interact and relax in a cyclic manner.&amp;lt;ref name=&amp;quot;Varkuti&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
[[Image:picture 1.png]]&lt;br /&gt;
# ATP binds to S1 causing Actin to disassociate out of it&#039;s rigor complex (between actin and the S1 catalytic site on myosin)&lt;br /&gt;
# S1 causes the hydolysis of ATP to ADP and Pi&lt;br /&gt;
# Actin interacts with the S1-ADP-Pi complex and Pi is released&lt;br /&gt;
# S1 catalytic site&#039;s affinity for actin increases and the Actin-S1-ADP forms&lt;br /&gt;
# ADP is released, causing actin and myosin to again enter into the tightly bound rigor complex&amp;lt;ref name=&amp;quot;Ruppel&amp;quot; /&amp;gt;&amp;lt;ref name=&amp;quot;Koubassova&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==Medical Implications and Possible Applications==&lt;br /&gt;
&lt;br /&gt;
The discovery of myosin structure served as a crucial component in understanding the causes of many health related problems.  Dysfunctional myosin mutations have been linked to hypertrophy in the heart.  The heart enlarges to compensate for inadequate cardiac muscle contractions and consequent poor blood circulation.  Also, blood platelet contractile protein aggregation and secretion is impeded by faulty myosin in patients suffering from idiopathic scoliosis.  A defect in the less-well known myosin VIIA causes Usher 1B syndrome; causing a loss of sight and hearing impairments.  Further research will hopefully give more insight into the unknown causes of other diseases and disorders linked to myosin protein mutations.&amp;lt;ref name=&amp;quot;CHEM43&amp;quot; /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==References==&lt;br /&gt;
&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Nishika Patel</name></author>
	</entry>
</feed>