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		<id>https://proteopedia.org/index.php?title=Chemical_communication_in_arthropods&amp;diff=2370200</id>
		<title>Chemical communication in arthropods</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Chemical_communication_in_arthropods&amp;diff=2370200"/>
		<updated>2015-01-29T12:32:26Z</updated>

		<summary type="html">&lt;p&gt;Nurit Eliash: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;[[Image:Sensilla.png|thumb|upright=1.5|Figure 1: Vertebrate (a), and insect (b) sensilla. Figure 1 from Kaupp (2010), used with permission of Prof. U. Benjamin Kaupp.]] &lt;br /&gt;
[[Image:Signal trunsdution - Sanchez 2009.jpg|thumb|right|upright=2|Figure 2.(a) Schematic representation of the general structure of an insect olfactory hair; (b) The first molecular steps of the insect chemosensory signaling transduction pathway. Figure 1 from Sánchez-Gracia et al.(2009)&amp;lt;ref&amp;gt;doi: 10.1038/hdy.2009.55&amp;lt;/ref&amp;gt;, used with permission of Prof. Sa´nchez-Gracia.]]&lt;br /&gt;
 [[Image:Vieira and Rozas 2011 fig7.JPG|thumb|upright=1.5|Figure 3. The evolution of the Chemosensory System. Blue boxes represent the aquatic lifestyle. Right: Presence or absence of the chemosensory gene families in extant species. Branch lengths are not to scale. Figure 7 from Vieira and Rozas (2011), used with permission of Prof Julio Rozas &amp;lt;ref name=&amp;quot;Vieira and Rozas&amp;quot;&amp;gt;DOI: 10.1093/gbe/evr033&amp;lt;/ref&amp;gt;]] &lt;br /&gt;
&lt;br /&gt;
==The molecular basis of chemical communication==&lt;br /&gt;
The sense of smell, [http://en.wikipedia.org/wiki/Olfaction Olfaction] is a primary sense in nature. It plays a significant role in behaviors which are crucial for the organism survival: food searching, host and mating selection, and avoiding predators and pathogens &amp;lt;ref name=&amp;quot;kaupp&amp;quot;&amp;gt;DOI: 10.1038/nrn2789&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
In both [http://en.wikipedia.org/wiki/Arthropod arthropods] and [http://en.wikipedia.org/wiki/Vertebrate vertebrates] the detection of volatiles is completed by a complicated process which is mediated by soluble as well as transmembrane proteins &amp;lt;ref name=&amp;quot;pelosi&amp;quot;&amp;gt;DOI: 10.3389/fphys.2014.00320&amp;lt;/ref&amp;gt;.&lt;br /&gt;
It should be mentioned that the detection of [http://en.wikipedia.org/wiki/Pheromone pheromones] is also vital to microorganisms, as it regulates gene expression in what is termed [http://en.wikipedia.org/wiki/Quorum_sensing “quorum sensing”].  &lt;br /&gt;
In arthropods, most of what is known on chemosensory communication is based on research studies in insects. The process begins when a volatile (mostly a small [http://en.wikipedia.org/wiki/Hydrophobe hydrophobic] molecule) enters the chemosensilla lymph of an insect, or the mucus of a vertebrate in the nasal cavity ([[fig 1]]). Both media are abundant in soluble proteins which bind to the hydrophobic molecules, solubilize and carry the molecule to the [http://en.wikipedia.org/wiki/Chemoreceptor chemoreceptors] on the dendritic membrane of the olfactory receptor neuron &amp;lt;ref name=&amp;quot;kaupp&amp;quot; /&amp;gt;&amp;lt;ref name=&amp;quot;vogt&amp;quot;&amp;gt;Vogt RG (2005) Molecular basis of pheromone detection in insects. Comprehensive Insect Physiology, Biochemistry, Pharmacology and Molecular Biology, eds Gilbert LI, Iatro K, Gills S (Elsevier, London), Vol 3, pp 753–804.&amp;lt;/ref&amp;gt;.The chemical signal is thereby translated into an electrical signal which can cause an immediate response, or further processed with other signals in the insect&#039;s mushroom bodies or vertebrate&#039;s brain ([[fig 2]])&amp;lt;ref&amp;gt;doi: 10.3389/fncel.2012.00048&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;doi: 10.1146/annurev-ento-120811-153635&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== What are the differences and similarities between Arthropods and Vertebrates? ==&lt;br /&gt;
 &lt;br /&gt;
Though functionally similar, receptors as well as soluble proteins are structurally and genetically unrelated in insects and vertebrates (see [[fig 3]] for the putative evolution of proteins involved in chemosensory system).   &lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;Receptors&#039;&#039;&#039; &lt;br /&gt;
Most of the vertebrates&#039; chemosensory receptors are metabotropic and belong to the [[G protein-coupled receptors]]. Once the volatile binds to the receptor it initiates intracellular signal transduction &amp;lt;ref&amp;gt;doi: 10.1016/S0167-4838(00)00167-9&amp;lt;/ref&amp;gt;. On the other hand, arthropods&#039; and insects&#039; chemoreceptors are composed of two subunits: [http://en.wikipedia.org/wiki/Olfactory_receptor Receptor] and [http://en.wikipedia.org/wiki/Co-receptor Co-receptor] that upon interaction with the volatile or the complex of volatile-soluble protein, are activated and serve as an [http://en.wikipedia.org/wiki/Ion_channel ion channel]&amp;lt;ref&amp;gt;doi: 10.1038/nature06861&amp;lt;/ref&amp;gt;. The opening of the ion channel changes the [http://en.wikipedia.org/wiki/Membrane_potential membrane potential], and starts the inter-cellular signal transduction&amp;lt;ref name=&amp;quot;vogt&amp;quot; /&amp;gt;.[[Image:Chemoreceptors-insects.jpg|thumb|center|upright=2.5|Figure 4: Types of insect receptors. Figure 1 from Kaupp (2010), used with permission of Prof. U. Benjamin Kaupp.]]    &lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;Soluble proteins&#039;&#039;&#039;&lt;br /&gt;
These proteins which are concentrated in the sensillar lymph, solubilize and carry the volatile molecules to the receptor. &lt;br /&gt;
There are two main known types of soluble proteins that are involved in arthropods&#039; chemical communication: &#039;&#039;&#039;[http://proteopedia.org/w/Odorant_binding_protein Odorant binding proteins –OBPs]&#039;&#039;&#039;,&#039;&#039;&#039;[http://proteopedia.org/wiki/index.php/Chemosensory_protein Chemosensory protein-CSP]&#039;&#039;&#039; ([[fig 5]]). Though bearing the same name and participating in the same function, OBP of vertebrates and arthropods are two distinct families with completely different structure and origin&amp;lt;ref name=&amp;quot;pelosi&amp;quot; /&amp;gt;. Arthropods&#039; OBP are composed of alpha helices, while vertebrates&#039; OBP belong to the [http://en.wikipedia.org/wiki/Lipocalin Lipocalins] super family and have a beta-barrel structure (for structure comparison, see [[table 1]] and [[fig 5]]). Recently, another family of proteins has been suggested to play a role in ant chemical communication, &#039;&#039;&#039;[https://www.wikigenes.org/e/gene/e/10577.html Niemann-Pick type C2 protein-NPC2]&#039;&#039;&#039; &amp;lt;ref name=&amp;quot;ishida&amp;quot;&amp;gt;DOI: 10.1073/pnas.1323928111&amp;lt;/ref&amp;gt;. &lt;br /&gt;
[[Image:Fig 3 soluble proteins.png|thumb|center|upright=3|Figure 5. (a) An example for vertebrate&#039;s OBP-a pig OBP, PDB:[[1e06]]; (b) An example for insect&#039;s OBP- &#039;&#039;Bombyx mori&#039;&#039; PBP, PDB:[[1dqe]]; (c) An example for insect&#039;s CSP-&#039;&#039;Mamestra brassicae&#039;&#039; CSP2 PDB:[[1n8u]]]]&lt;br /&gt;
[[Image:Soluble proteins table.png|thumb|center|upright=2|Table 1. Summation of the main structure properties of soluble proteins types]]&lt;br /&gt;
&lt;br /&gt;
==Types of Soluble proteins in arthropods== &lt;br /&gt;
&amp;lt;StructureSection load=&#039;1OOH&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;&#039;&#039;Mamestra brassicae&#039;&#039; CSP2 PDB:[[1n8u]]&#039; scene=&#039;&#039;&amp;gt;&lt;br /&gt;
In each protein the conserved &amp;lt;font color=#FF7E00&amp;gt;&amp;lt;b&amp;gt;&#039;&#039;&#039;cysteins&#039;&#039;&#039;&amp;lt;/b&amp;gt;&amp;lt;/font&amp;gt;and the &amp;lt;font color=#FDEE00&amp;gt;&amp;lt;b&amp;gt;&#039;&#039;&#039;disulfide bonds&#039;&#039;&#039;&amp;lt;/b&amp;gt;&amp;lt;/font&amp;gt; are color marked.&lt;br /&gt;
*&#039;&#039;&#039;OBP&#039;&#039;&#039;&lt;br /&gt;
This family was the first soluble protein discovered in the chemosensory system of arthropods. Its general strcuture is of alpha helices that are compactly tied by 3 disulfide bridges formed by 6 conserved cystein residues. &lt;br /&gt;
The male fly of &#039;&#039;Drosophila melanogaster&#039;&#039; produces the pheromone 11-cis vaccenyl acetate which mediates aggregation behavior of other flies of the same species&amp;lt;ref&amp;gt;doi:10.1523/JNEUROSCI.0876-06.2006&amp;lt;/ref&amp;gt;. The detection of the pheromone, was shown to be mediated by pheromone-induced conformational shifts in the PBP, &amp;lt;scene name=&#039;61/614066/Lush/1&#039;&amp;gt;LUSH&amp;lt;/scene&amp;gt;. In fact, the triggering of the neuron was possible in the absence of the pheromone itself&amp;lt;ref&amp;gt;doi: m10.1016/j.cell.2008.04.046&amp;lt;/ref&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;CSP&#039;&#039;&#039;&lt;br /&gt;
This protein family which was discovered after the OBP family, though having a similar alpha helice structure, is shorter and bear only 4 conserved cysteins that forms 2 disulfide bridges. &lt;br /&gt;
In the moth &#039;&#039;Mamestra brassicae&#039;&#039; a member of the CSP family, CSPMbraA6, was isolated from the moth antennae. It was shown that the protein can bind &amp;lt;scene name=&#039;61/614066/Mamestra_brassicae_csp/1&#039;&amp;gt;three molecules of its ligand, 12-bromo-dodecanol&amp;lt;/scene&amp;gt; at the same time&amp;lt;ref&amp;gt;doi: 10.1073/pnas.0836654100&amp;lt;/ref&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;NPC2&#039;&#039;&#039;&lt;br /&gt;
Recently, a new family of proteins have been suggested to play a role as a soluble protein. Until now NPC2 proteins were known to carry lipids and cholesterol molecules in the cells&amp;lt;ref&amp;gt;doi: 10.1016/j.bbalip.2004.08.007&amp;lt;/ref&amp;gt;, yet a member of this family was isolated from the antennae of the ant &#039;&#039;Camponatus japonicus&#039;&#039;&amp;lt;ref name=&amp;quot;ishida&amp;quot; /&amp;gt;. This protein has a beta-barrel shape and &amp;lt;scene name=&#039;61/614066/Npc2_cysteins/2&#039;&amp;gt;6 cysteins forming 3 disulfide bonds&amp;lt;/scene&amp;gt; (similar to classical vertebrates OBP). Another conserved feature is the&amp;lt;scene name=&#039;61/614066/Resid_in_the_cavity_gate/2&#039;&amp;gt;6 conserved hydrophobic residues at the gate of the cavity&amp;lt;/scene&amp;gt;, supposedly attracting the hydrophobic ligand to the cavity&amp;lt;ref&amp;gt;doi: 10.1074/jbc.M703848200.STRUCTURAL&amp;lt;/ref&amp;gt;. This first finding could explain the small number of known soluble proteins in some insects and other arthropods, relativity to their ability to sense large number of volatiles.    &lt;br /&gt;
&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
== See also == &lt;br /&gt;
*[[Odorant_binding_protein_3D_structures]]&lt;br /&gt;
*For comprehensive explanation about quorum sensing please turn to Fuqua et al. (2001) &amp;lt;ref&amp;gt;DOI: 10.1146/annurev.genet.35.102401.090913 &amp;lt;/ref&amp;gt;.&lt;br /&gt;
*for more information about the protein-ligand interaction, you may go to [[Odorant binding protein]].&lt;br /&gt;
== References ==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Nurit Eliash</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Odorant_binding_protein&amp;diff=2370199</id>
		<title>Odorant binding protein</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Odorant_binding_protein&amp;diff=2370199"/>
		<updated>2015-01-29T12:28:14Z</updated>

		<summary type="html">&lt;p&gt;Nurit Eliash: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;[[Image:Bombyx mori.jpg|thumb|upright=2|&#039;&#039;Bombyx mori&#039;&#039;, the silk moth, picture by [https://www.flickr.com/photos/depredator007/2522038240/ Fernando Cuenca]]]&lt;br /&gt;
[[Image:Bombykol.png|thumb|upright=1|Bombykol, a sex pheromone of &#039;&#039;Bombyx mori&#039;&#039;, from [http://pubchem.ncbi.nlm.nih.gov/compound/Bombykol#section=Top PubChem]]]&lt;br /&gt;
==Introduction==&lt;br /&gt;
Odorant-binding protein (OBP) are soluble proteins which are involved in the processes of odorant detection in the olfactory sensilla &amp;lt;ref name=&amp;quot;Pelosi 2014&amp;quot;&amp;gt;doi: 10.3389/fphys.2014.00320&amp;lt;/ref&amp;gt;. Though functionally the same, vertebrates and insects OBP have different origin and structure.&lt;br /&gt;
OBPs are important for insect olfaction. For instance, OBP76a (LUSH) in the fly [http://en.wikipedia.org/wiki/Drosophila_melanogaster &#039;&#039;Drosophila melanogaster&#039;&#039;] is required for the detection of the pheromone vaccenyl acetate &amp;lt;ref name=&amp;quot;Xu 2005&amp;quot;&amp;gt;doi: 10.1016/j.neuron.2004.12.031&amp;lt;/ref&amp;gt; and has been proven to adopt a conformation that activates the odorant receptor &amp;lt;ref name=&amp;quot;Laughlin 2008&amp;quot;&amp;gt;doi: 10.1016/j.cell.2008.04.046&amp;lt;/ref&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
==OBP in insects==&lt;br /&gt;
==== OBP Function ====&lt;br /&gt;
Despite five decades of intensive research, the exact roles of OBP and the mechanism by which the odorant receptor (OR) is activated are still in dispute &amp;lt;ref name=&amp;quot;Leal&amp;quot;&amp;gt;DOI: 10.1146/annurev-ento-120811-153635&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI: 10.1007/s00359-009-0461-4&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;A few functions have been suggested for OBP:&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
1. Solubilizing the odorant molecule and its transportation in the sensillar lymph.&lt;br /&gt;
&lt;br /&gt;
2. Protecting the odorant molecule from the odorant degrading enzymes, in the sensillar lymph.&lt;br /&gt;
&lt;br /&gt;
3. Activating the odorant receptor on the dendrite membrane, by the odorant-OBP complex.&lt;br /&gt;
&lt;br /&gt;
4. Mediating the deactivation of the odorant molecule after the activation of the receptor.&lt;br /&gt;
&lt;br /&gt;
5. An organic anion (the protein has 9 negative charges).&lt;br /&gt;
&lt;br /&gt;
Of all, the first role of OBP as an odorant solubilizer and carrier is generally accepted.&lt;br /&gt;
&lt;br /&gt;
In order to explain the structure and function of these fascinating proteins, this page will further focus on a particular OBP - the well investigated &#039;&#039;[http://en.wikipedia.org/wiki/Bombyx_mori Bombyx mori]&#039;&#039; pheromone binding protein: [http://www.uniprot.org/uniprot/P34174 BmorPBP].&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
====&#039;&#039;Bombyx mori&#039;&#039; BmorPBP (lets talk about sex..)====&lt;br /&gt;
&amp;lt;StructureSection load=&#039;1ls8&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;&#039;&#039;Bombyx mori&#039;&#039; PBP -BmorPBP scene=&#039;&#039;&amp;gt;&lt;br /&gt;
Pheromone binding proteins (PBPs) are specialized members of the insect odorant-binding protein (OBP) super-family.   &lt;br /&gt;
The main purpose in the adult moth&#039;s short life is reproduction. In fact, the male and female moth invest all of their energy and resources hoping to reach to the ultimate goal-  mating. This long journey begins when the female moth releases a sex pheromone, usually during specific hours in the night &amp;lt;ref&amp;gt;doi: 10.1007/BF01946910&amp;lt;/ref&amp;gt;. &lt;br /&gt;
BmorPBP was first identified in the &#039;&#039;B. mori&#039;&#039; male antennae by Krieger et al. in 1996 &amp;lt;ref&amp;gt;doi: 10.1016/0965-1748(95)00096-8&amp;lt;/ref&amp;gt;, as the PBP of the first sex pheromone discovered ((E,Z)-10,12-hexadecadienol, or [http://en.wikipedia.org/wiki/Bombykol Bombykol]). The male moth needs to detect minute amount of the pheromone in the air, while following a turbulent wind-born pheromone trail and response fast (experimental evidence shows a response time of 0.5 seconds&amp;lt;ref&amp;gt;doi: 10.1038/293161a0&amp;lt;/ref&amp;gt;). &lt;br /&gt;
&lt;br /&gt;
====BmorPBP structure and function====&lt;br /&gt;
The protein has 164 amino acids that forms 6-7 alpha helices (depends on the protein conformation). Three &amp;lt;font color=#FFEF00&amp;gt;&amp;lt;b&amp;gt;disulfide bonds&amp;lt;/b&amp;gt;&amp;lt;/font&amp;gt; formed by &amp;lt;scene name=&#039;68/683383/Cysteins6/1&#039;&amp;gt;6 cystein &amp;lt;/scene&amp;gt; residues tied four helices, and form the compact and robust structure of the protein. As expected from a soluble protein, its surface is covered with &amp;lt;scene name=&#039;68/683383/Charged_resid/1&#039;&amp;gt;charged residues&amp;lt;/scene&amp;gt;, which allows it to interact with the water molecule and solubilize in the sensillar lymph.&lt;br /&gt;
&lt;br /&gt;
====BmorPBP - ligand binding====&lt;br /&gt;
The protein natural ligand is the moth pheromone &amp;lt;scene name=&#039;68/683383/Bombykol_ligand_in_2p71/1&#039;&amp;gt;Bombykol&amp;lt;/scene&amp;gt;. However, it was demonstrated that other molecules can also bind to the protein cavity &amp;lt;ref&amp;gt;doi: 10.1016/j.str.2007.07.013&amp;lt;/ref&amp;gt;. The interaction with the ligand is through 4 alpha helices 1, 4, 5 and 6 in the core of the protein, which form the binding cavity &amp;lt;ref&amp;gt;doi: 10.1016/S1074-5521(00)00078-8&amp;lt;/ref&amp;gt;.    &lt;br /&gt;
Inside the binding cavity, &amp;lt;scene name=&#039;68/683383/Residues_interacting/1&#039;&amp;gt;non-charged residues&amp;lt;/scene&amp;gt; interact with the pheromone, mainly by Van der Waals bonds. Out of those residues, some are conserved across OBP of lepidopteran (&amp;lt;font color=#8DB600&amp;gt;&amp;lt;b&amp;gt;in green&amp;lt;/b&amp;gt;&amp;lt;/font&amp;gt;), and the rest are conserved in lepidopteran PBP only (&amp;lt;font color=#318CE7&amp;gt;&amp;lt;b&amp;gt;in light blue&amp;lt;/b&amp;gt;&amp;lt;/font&amp;gt;).   &lt;br /&gt;
In addition, the hydroxyl group of the pheromone bombykol forms a &amp;lt;scene name=&#039;68/683383/Ser56_interaction_with_oxg/2&#039;&amp;gt;hydrogen bond with the side chain of Ser56&amp;lt;/scene&amp;gt;, Ser56 in red, oxygens are in purple (O–O distance of 2.8 Å).  &lt;br /&gt;
&lt;br /&gt;
====Protein conformations====&lt;br /&gt;
[[Image:A -B forms without ligand.png|thumb|upright=2|The A and B forms without ligand (PDB IDs: [[1gm0]] and [[1ls8]]).]]&lt;br /&gt;
[[Image:A to b with ligand.png|thumb|upright=2|The A and B forms with ligand (PDB IDs: [[1gm0]] and [[1ls8]]).]]&lt;br /&gt;
&lt;br /&gt;
BmorPBP has two conformations: The &#039;&#039;&#039;&amp;quot;closed form&amp;quot; (A)&#039;&#039;&#039; and the &#039;&#039;&#039;&amp;quot;open form&amp;quot; (B)&#039;&#039;&#039;&amp;lt;ref&amp;gt;DOI: 10.1074/jbc.274.43.30950&amp;lt;/ref&amp;gt;. The bombykol and the alpha-helix located in the c-terminus of the protein compete for the binding site: when the c-terminus is inside the binding cavity it get&#039;s an alpha helix shape, and the protein is in its &amp;quot;close form&amp;quot; (B), whereas in the &amp;quot;open form&amp;quot; (A) the c-terminus is outside of the protein and has no defined secondary structure. Binding experiments have shown that the B-form binds 15 times higher than the A-form &amp;lt;ref&amp;gt;doi: 10.1073/pnas.0501447102&amp;lt;/ref&amp;gt;, therefore considered to be the carrier of the pheromone. The complex of the A-form and the pheromone, is then considered the form that activates the receptor.         &lt;br /&gt;
&lt;br /&gt;
The &amp;lt;scene name=&#039;68/683383/1dqe-1gm0/4&#039;&amp;gt;transition between the two conformation&amp;lt;/scene&amp;gt; is both pH and ligand dependent &amp;lt;ref&amp;gt;doi: 10.1073?pnas.251532998&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI: 10.1016/j.bbrc.2005.07.176&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;doi: 10.1073/pnas.1317706110&amp;lt;/ref&amp;gt;. In short, the B-form (c-terminus outside the cavity) occurs only at neutral pH and in the presence of the ligand. The A-form (c-terminus inside the cavity) occurs at both low and neutral pH, yet at the latter only in the absence of ligand. Therefore, in neutral pH when the ligand is binding to the protein in its A-form, the complex formation causes a change in conformation to the B-form. However, both A and B forms are equally distributed in the lymph.&lt;br /&gt;
{{Button Toggle AnimationOnPause}}&lt;br /&gt;
   &lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Conformation transition mechanism:&#039;&#039;&#039;&lt;br /&gt;
The c-terminus of the protein bears mostly &amp;lt;scene name=&#039;68/683383/Hydrophobic_resid/1&#039;&amp;gt;non-polar amino acids&amp;lt;/scene&amp;gt;. Yet on the surface of the helix there are three exceptional amino acids: Asp-132, Glu-137, and Glu-141, which are conserved in moth PBP &amp;lt;ref&amp;gt;doi: 10.1016/j.bbrc.2005.07.176&amp;lt;/ref&amp;gt;. Of these, residues &amp;lt;scene name=&#039;68/683383/Asp132/1&#039;&amp;gt;Asp-132&amp;lt;/scene&amp;gt; (and Glu-141, if present) triggers the formation of the alpha-helix upon protonation at low pH. This causes the transition from the &amp;lt;scene name=&#039;68/683383/B_form_with_ligand/1&#039;&amp;gt;&amp;quot;A form&amp;quot;&amp;lt;/scene&amp;gt;, to the &amp;lt;scene name=&#039;68/683383/A_form_with_ligand/1&#039;&amp;gt;&amp;quot;B form&amp;quot;&amp;lt;/scene&amp;gt; and the ejaculation of the ligand from the binding pocket, which is replaced by the formatted alpha helix&amp;lt;ref&amp;gt;doi: 10.1016/j.bbrc&amp;lt;/ref&amp;gt;. &lt;br /&gt;
Studies on other lepidopterans that show a similar pH dependent conformation suggests that this model is a general model moth PBP&amp;lt;ref name=&amp;quot;Leal&amp;quot; /&amp;gt;. Nonetheless, the enormous diversity among insects is not allowing us to assume this model is true for all insects&#039; OBPs.&lt;br /&gt;
[[Image:N model extended.png|thumb|upright=2.5|Figure 1. The events prior the neuron excitation, following the &amp;quot;N model&amp;quot; suggested by Kaissling (2009)&amp;lt;ref name=&amp;quot;kaissling&amp;quot;&amp;gt;DOI: 10.1007/s00359-009-0461-4&amp;lt;/ref&amp;gt; The pheromone enters the sensillar lymph through a pore in cuticle. The pheromone can then be degraded by the ODE (1) -or- bind to the A and B protein forms (2a and 2b, respectively).  When the complex arrives at the low pH near the membrane, the transition is in favor of the A-form, (3) in which the -c-terminus is forming an alpha helix inside the binding cavity, pushing out the pheromone. The activation of the complex of odorant receptor and coreceptor (OR:Orco), is induced by ether the complex of pheromone-PBP, or by the pheromone alone (5, two options). The B-form can also act as a scavenger, as it mediates the deactivation of the pheromone (6) and releases it to the ODE (6)]] &lt;br /&gt;
====Receptor activation====&lt;br /&gt;
The insect odorant receptor is a heteromer composed of a single ligand-binding OR and the OR coreceptor Orco &amp;lt;ref name=&amp;quot;Larsson &amp;quot;&amp;gt;DOI: 10.1016/j.neuron.2004.08.019&amp;lt;/ref&amp;gt;. Orco acts as a [http://en.wikipedia.org/wiki/Chaperone_%28protein%29 chaperone] and also play a role in signal transduction &amp;lt;ref&amp;gt;doi: 10.1038/nature06861&amp;lt;/ref&amp;gt;. The activation of this complex begins the intracellular signal transduction. Two theories have been proposed for the activation of the odorant receptors located on the dendrite membrane. One theory suggests that the pheromone-PBP complex is needed for the activation of the OR:CO complex, while the second theory argues that the pheromone itself is sufficient for the activation of the OR:CO.    &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;Activation by the pheromone alone&#039;&#039;&#039; &lt;br /&gt;
This model is supported by the pH dependent conformation transition, that is described above. The bulk of the sensillar lymph is in neutral pH (6.5-7), while environment near the dendrite membrane bears a low pH (4.5), due to the negative charges on the surface of the membrane &amp;lt;ref&amp;gt;DOI: 10.1016/0040-8166(84)90004-1&amp;lt;/ref&amp;gt;, which cause the accumulation of positively charged cations near the membrane surface (20-50 nm)&amp;lt;ref name=&amp;quot;kaissling&amp;quot; /&amp;gt;. According to this model, the pheromone enters the sensillar lymph through a pore in the cuticle, then it can be either degraded by odorant degrading enzymes (ODE) or bind to a PBP (of both forms). Once the complex arrives to the low pH environment near the dendritic membrane the PBP will shift to the A-form, thereby releasing the ligand from the binding pocket, allowing it to activate the OR:CO-OR complex and the cellular signal transduction begins.      &lt;br /&gt;
 &lt;br /&gt;
*&#039;&#039;&#039;Activation by the complex pheromone-PBP&#039;&#039;&#039;&lt;br /&gt;
An alternative mode of action was proposed for the receptor activation in &#039;&#039;Drosophila melanogaster&#039;&#039;, where it was found that the complex of pheromone-PBP is required for the activity of pheromone-sensitive neurons &amp;lt;ref&amp;gt;DOI: 10.1016/j.neuron.2004.12.031&amp;lt;ref/&amp;gt;&amp;lt;ref&amp;gt;doi: 10.1016/j.cell.2008.04.046&amp;lt;ref/&amp;gt; &lt;br /&gt;
&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== See also == &lt;br /&gt;
*[[Odorant_binding_protein_3D_structures]]&lt;br /&gt;
*[[Chemical communication in arthropods]]&lt;br /&gt;
*[[Pheromone binding protein]]&lt;br /&gt;
== References ==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Nurit Eliash</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Odorant_binding_protein&amp;diff=2370197</id>
		<title>Odorant binding protein</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Odorant_binding_protein&amp;diff=2370197"/>
		<updated>2015-01-29T11:49:12Z</updated>

		<summary type="html">&lt;p&gt;Nurit Eliash: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;[[Image:Bombyx mori.jpg|thumb|upright=2|&#039;&#039;Bombyx mori&#039;&#039;, the silk moth, picture by [https://www.flickr.com/photos/depredator007/2522038240/ Fernando Cuenca]]]&lt;br /&gt;
[[Image:Bombykol.png|thumb|upright=1|Bombykol, a sex pheromone of &#039;&#039;Bombyx mori&#039;&#039;, from [http://pubchem.ncbi.nlm.nih.gov/compound/Bombykol#section=Top PubChem]]]&lt;br /&gt;
==Introduction==&lt;br /&gt;
Odorant-binding protein (OBP) are soluble proteins which are involved in the processes of odorant detection in the olfactory sensilla &amp;lt;ref name=&amp;quot;Pelosi 2014&amp;quot;&amp;gt;doi: 10.3389/fphys.2014.00320&amp;lt;/ref&amp;gt;. Though functionally the same, vertebrates and insects OBP have different origin and structure.&lt;br /&gt;
OBPs are important for insect olfaction. For instance, OBP76a (LUSH) in the fly [http://en.wikipedia.org/wiki/Drosophila_melanogaster &#039;&#039;Drosophila melanogaster&#039;&#039;] is required for the detection of the pheromone vaccenyl acetate &amp;lt;ref name=&amp;quot;Xu 2005&amp;quot;&amp;gt;doi: 10.1016/j.neuron.2004.12.031&amp;lt;/ref&amp;gt; and has been proven to adopt a conformation that activates the odorant receptor &amp;lt;ref name=&amp;quot;Laughlin 2008&amp;quot;&amp;gt;doi: 10.1016/j.cell.2008.04.046&amp;lt;/ref&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
==OBP in insects==&lt;br /&gt;
==== OBP Function ====&lt;br /&gt;
Despite five decades of intensive research, the exact roles of OBP and the mechanism by which the odorant receptor (OR) is activated are still in dispute &amp;lt;ref name=&amp;quot;Leal&amp;quot;&amp;gt;DOI: 10.1146/annurev-ento-120811-153635&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI: 10.1007/s00359-009-0461-4&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;A few functions have been suggested for OBP:&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
1. Solubilizing the odorant molecule and its transportation in the sensillar lymph.&lt;br /&gt;
&lt;br /&gt;
2. Protecting the odorant molecule from the odorant degrading enzymes, in the sensillar lymph.&lt;br /&gt;
&lt;br /&gt;
3. Activating the odorant receptor on the dendrite membrane, by the odorant-OBP complex.&lt;br /&gt;
&lt;br /&gt;
4. Mediating the deactivation of the odorant molecule after the activation of the receptor.&lt;br /&gt;
&lt;br /&gt;
5. An organic anion (the protein has 9 negative charges).&lt;br /&gt;
&lt;br /&gt;
Of all, the first role of OBP as an odorant solubilizer and carrier is generally accepted.&lt;br /&gt;
&lt;br /&gt;
In order to explain the structure and function of these fascinating proteins, this page will further focus on a particular OBP - the well investigated &#039;&#039;[http://en.wikipedia.org/wiki/Bombyx_mori Bombyx mori]&#039;&#039; pheromone binding protein: [http://www.uniprot.org/uniprot/P34174 BmorPBP].&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
====&#039;&#039;Bombyx mori&#039;&#039; BmorPBP (lets talk about sex..)====&lt;br /&gt;
&amp;lt;StructureSection load=&#039;1ls8&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;&#039;&#039;Bombyx mori&#039;&#039; PBP -BmorPBP scene=&#039;&#039;&amp;gt;&lt;br /&gt;
Pheromone binding proteins (PBPs) are specialized members of the insect odorant-binding protein (OBP) super-family.   &lt;br /&gt;
The main purpose in the adult moth&#039;s short life is reproduction. In fact, the male and female moth invest all of their energy and resources hoping to reach to the ultimate goal-  mating. This long journey begins when the female moth releases a sex pheromone, usually during specific hours in the night &amp;lt;ref&amp;gt;doi: 10.1007/BF01946910&amp;lt;/ref&amp;gt;. &lt;br /&gt;
BmorPBP was first identified in the &#039;&#039;B. mori&#039;&#039; male antennae by Krieger et al. in 1996 &amp;lt;ref&amp;gt;doi: 10.1016/0965-1748(95)00096-8&amp;lt;/ref&amp;gt;, as the PBP of the first sex pheromone discovered ((E,Z)-10,12-hexadecadienol, or [http://en.wikipedia.org/wiki/Bombykol Bombykol]). The male moth needs to detect minute amount of the pheromone in the air, while following a turbulent wind-born pheromone trail and response fast (experimental evidence shows a response time of 0.5 seconds&amp;lt;ref&amp;gt;doi: 10.1038/293161a0&amp;lt;/ref&amp;gt;). &lt;br /&gt;
&lt;br /&gt;
====BmorPBP structure and function====&lt;br /&gt;
The protein has 164 amino acids that forms 6-7 alpha helices (depends on the protein conformation). Three &amp;lt;font color=#FFEF00&amp;gt;&amp;lt;b&amp;gt;disulfide bonds&amp;lt;/b&amp;gt;&amp;lt;/font&amp;gt; formed by &amp;lt;scene name=&#039;68/683383/Cysteins6/1&#039;&amp;gt;6 cystein &amp;lt;/scene&amp;gt; residues tied four helices, and form the compact and robust structure of the protein. As expected from a soluble protein, its surface is covered with &amp;lt;scene name=&#039;68/683383/Charged_resid/1&#039;&amp;gt;charged residues&amp;lt;/scene&amp;gt;, which allows it to interact with the water molecule and solubilize in the sensillar lymph.&lt;br /&gt;
&lt;br /&gt;
====BmorPBP - ligand binding====&lt;br /&gt;
The protein natural ligand is the moth pheromone &amp;lt;scene name=&#039;68/683383/Bombykol_ligand_in_2p71/1&#039;&amp;gt;Bombykol&amp;lt;/scene&amp;gt;. However, it was demonstrated that other molecules can also bind to the protein cavity &amp;lt;ref&amp;gt;doi: 10.1016/j.str.2007.07.013&amp;lt;/ref&amp;gt;. The interaction with the ligand is through 4 alpha helices 1, 4, 5 and 6 in the core of the protein, which form the binding cavity &amp;lt;ref&amp;gt;doi: 10.1016/S1074-5521(00)00078-8&amp;lt;/ref&amp;gt;.    &lt;br /&gt;
Inside the binding cavity, &amp;lt;scene name=&#039;68/683383/Residues_interacting/1&#039;&amp;gt;non-charged residues&amp;lt;/scene&amp;gt; interact with the pheromone, mainly by Van der Waals bonds. Out of those residues, some are conserved across OBP of lepidopteran (&amp;lt;font color=#8DB600&amp;gt;&amp;lt;b&amp;gt;in green&amp;lt;/b&amp;gt;&amp;lt;/font&amp;gt;), and the rest are conserved in lepidopteran PBP only (&amp;lt;font color=#318CE7&amp;gt;&amp;lt;b&amp;gt;in light blue&amp;lt;/b&amp;gt;&amp;lt;/font&amp;gt;).   &lt;br /&gt;
In addition, the hydroxyl group of the pheromone bombykol forms a &amp;lt;scene name=&#039;68/683383/Ser56_interaction_with_oxg/2&#039;&amp;gt;hydrogen bond with the side chain of Ser56&amp;lt;/scene&amp;gt;, Ser56 in red, oxygens are in purple (O–O distance of 2.8 Å).  &lt;br /&gt;
&lt;br /&gt;
====Protein conformations====&lt;br /&gt;
[[Image:A -B forms without ligand.png|thumb|upright=2|The A and B forms without ligand (PDB IDs: [[1gm0]] and [[1ls8]]).]]&lt;br /&gt;
[[Image:A to b with ligand.png|thumb|upright=2|The A and B forms with ligand (PDB IDs: [[1gm0]] and [[1ls8]]).]]&lt;br /&gt;
&lt;br /&gt;
BmorPBP has two conformations: The &#039;&#039;&#039;&amp;quot;closed form&amp;quot; (A)&#039;&#039;&#039; and the &#039;&#039;&#039;&amp;quot;open form&amp;quot; (B)&#039;&#039;&#039;&amp;lt;ref&amp;gt;DOI: 10.1074/jbc.274.43.30950&amp;lt;/ref&amp;gt;. The bombykol and the alpha-helix located in the c-terminus of the protein compete for the binding site: when the c-terminus is inside the binding cavity it get&#039;s an alpha helix shape, and the protein is in its &amp;quot;close form&amp;quot; (B), whereas in the &amp;quot;open form&amp;quot; (A) the c-terminus is outside of the protein and has no defined secondary structure. Binding experiments have shown that the B-form binds 15 times higher than the A-form &amp;lt;ref&amp;gt;doi: 10.1073/pnas.0501447102&amp;lt;/ref&amp;gt;, therefore considered to be the carrier of the pheromone. The complex of the A-form and the pheromone, is then considered the form that activates the receptor.         &lt;br /&gt;
&lt;br /&gt;
The &amp;lt;scene name=&#039;68/683383/1dqe-1gm0/4&#039;&amp;gt;transition between the two conformation&amp;lt;/scene&amp;gt; is both pH and ligand dependent &amp;lt;ref&amp;gt;doi: 10.1073?pnas.251532998&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI: 10.1016/j.bbrc.2005.07.176&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;doi: 10.1073/pnas.1317706110&amp;lt;/ref&amp;gt;. In short, the B-form (c-terminus outside the cavity) occurs only at neutral pH and in the presence of the ligand. The A-form (c-terminus inside the cavity) occurs at both low and neutral pH, yet at the latter only in the absence of ligand. Therefore, in neutral pH when the ligand is binding to the protein in its A-form, the complex formation causes a change in conformation to the B-form. However, both A and B forms are equally distributed in the lymph.&lt;br /&gt;
{{Button Toggle AnimationOnPause}}&lt;br /&gt;
   &lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Conformation transition mechanism:&#039;&#039;&#039;&lt;br /&gt;
The c-terminus of the protein bears mostly &amp;lt;scene name=&#039;68/683383/Hydrophobic_resid/1&#039;&amp;gt;non-polar amino acids&amp;lt;/scene&amp;gt;. Yet on the surface of the helix there are three exceptional amino acids: Asp-132, Glu-137, and Glu-141, which are conserved in moth PBP &amp;lt;ref&amp;gt;doi: 10.1016/j.bbrc.2005.07.176&amp;lt;/ref&amp;gt;. Of these, residues &amp;lt;scene name=&#039;68/683383/Asp132/1&#039;&amp;gt;Asp-132&amp;lt;/scene&amp;gt; (and Glu-141, if present) triggers the formation of the alpha-helix upon protonation at low pH. This causes the transition from the &amp;lt;scene name=&#039;68/683383/B_form_with_ligand/1&#039;&amp;gt;&amp;quot;A form&amp;quot;&amp;lt;/scene&amp;gt;, to the &amp;lt;scene name=&#039;68/683383/A_form_with_ligand/1&#039;&amp;gt;&amp;quot;B form&amp;quot;&amp;lt;/scene&amp;gt; and the ejaculation of the ligand from the binding pocket, which is replaced by the formatted alpha helix&amp;lt;ref&amp;gt;doi: 10.1016/j.bbrc&amp;lt;/ref&amp;gt;. &lt;br /&gt;
Studies on other lepidopterans that show a similar pH dependent conformation suggests that this model is a general model moth PBP&amp;lt;ref name=&amp;quot;Leal&amp;quot; /&amp;gt;. Nonetheless, the enormous diversity among insects is not allowing us to assume this model is true for all insects&#039; OBPs.&lt;br /&gt;
[[Image:N model extended.png|thumb|upright=2.5|Figure 1. The events prior the neuron excitation, following the &amp;quot;N model&amp;quot; suggested by Kaissling (2009)&amp;lt;ref name=&amp;quot;kaissling&amp;quot;&amp;gt;DOI: 10.1007/s00359-009-0461-4&amp;lt;/ref&amp;gt; The pheromone enters the sensillar lymph through a pore in cuticle. The pheromone can then be degraded by the ODE (1) -or- bind to the A and B protein forms (2a and 2b, respectively).  When the complex arrives at the low pH near the membrane, the transition is in favor of the A-form, (3) in which the -c-terminus is forming an alpha helix inside the binding cavity, pushing out the pheromone. The activation of the complex of odorant receptor and coreceptor (OR:OR-CO), is induced by ether the complex of pheromone-PBP, or by the pheromone alone (5, two options). The B-form can also act as a scavenger, as it mediates the deactivation of the pheromone (6) and releases it to the ODE (6)]] &lt;br /&gt;
====Receptor activation====&lt;br /&gt;
Two theories have been proposed for the activation of the odorant receptors located on the dendrtirte membrane. One theory suggests that the pheromone-PBP complex is needed for the receptor activation, while the second theory argues that the pheromone itself is sufficient for the activation of the receptor.   &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;Activation by the pheromone alone&#039;&#039;&#039; &lt;br /&gt;
This model is supported by the pH dependent conformation transition, that is described above. The bulk of the sensillar lymph is in neutral pH (6.5-7), while environment near the dendrite membrane bears a low pH (4.5), due to the negative charges on the surface of the membrane &amp;lt;ref&amp;gt;DOI: 10.1016/0040-8166(84)90004-1&amp;lt;/ref&amp;gt;, which cause the accumulation of positively charged cations near the membrane surface (20-50 nm)&amp;lt;ref name=&amp;quot;kaissling&amp;quot; /&amp;gt;. According to this model, the pheromone enters the sensillar lymph through a pore in the cuticle, then it can be either degraded by odorant degrading enzymes (ODE) or bind to a PBP (of both forms). Once the complex arrives to the low pH environment near the dendritic membrane the PBP will shift to the A-form, thereby releasing the ligand from the binding pocket, allowing it to activate the OR:CO-OR complex and the cellular signal transduction begins.      &lt;br /&gt;
 &lt;br /&gt;
*&#039;&#039;&#039;Activation by the complex pheromone-PBP&#039;&#039;&#039;&lt;br /&gt;
An alternative mode of action was proposed for the receptor activation in &#039;&#039;Drosophila melanogaster&#039;&#039;, where it was found that the complex of pheromone-PBP is required for the activity of pheromone-sensitive neurons &amp;lt;ref&amp;gt;DOI: 10.1016/j.neuron.2004.12.031&amp;lt;ref/&amp;gt;&amp;lt;ref&amp;gt;doi: 10.1016/j.cell.2008.04.046&amp;lt;ref/&amp;gt; &lt;br /&gt;
&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== See also == &lt;br /&gt;
*[[Odorant_binding_protein_3D_structures]]&lt;br /&gt;
*[[Chemical communication in arthropods]]&lt;br /&gt;
*[[Pheromone binding protein]]&lt;br /&gt;
== References ==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Nurit Eliash</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Chemical_communication_in_arthropods&amp;diff=2370196</id>
		<title>Chemical communication in arthropods</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Chemical_communication_in_arthropods&amp;diff=2370196"/>
		<updated>2015-01-29T10:41:39Z</updated>

		<summary type="html">&lt;p&gt;Nurit Eliash: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;[[Image:Sensilla.png|thumb|upright=1.5|Figure 1: Vertebrate (a), and insect (b) sensilla. Figure 1 from Kaupp (2010), used with permission of Prof. U. Benjamin Kaupp.]] &lt;br /&gt;
[[Image:Signal trunsdution - Sanchez 2009.jpg|thumb|right|upright=2|Figure 2.(a) Schematic representation of the general structure of an insect olfactory hair; (b) The first molecular steps of the insect chemosensory signaling transduction pathway. Figure 1 from Sánchez-Gracia et al.(2009)&amp;lt;ref&amp;gt;doi: 10.1038/hdy.2009.55&amp;lt;/ref&amp;gt;, used with permission of Prof. Sa´nchez-Gracia.]]&lt;br /&gt;
 [[Image:Vieira and Rozas 2011 fig7.JPG|thumb|upright=1.5|Figure 3. The evolution of the Chemosensory System. Blue boxes represent the aquatic lifestyle. Right: Presence or absence of the chemosensory gene families in extant species. Branch lengths are not to scale. Figure 7 from Vieira and Rozas (2011), used with permission of Prof Julio Rozas &amp;lt;ref name=&amp;quot;Vieira and Rozas&amp;quot;&amp;gt;DOI: 10.1093/gbe/evr033&amp;lt;/ref&amp;gt;]] &lt;br /&gt;
&lt;br /&gt;
==The molecular basis of chemical communication==&lt;br /&gt;
The sense of smell, [http://en.wikipedia.org/wiki/Olfaction Olfaction] is a primary sense in nature. It plays a significant role in behaviors which are crucial for the organism survival: food searching, host and mating selection, and avoiding predators and pathogens &amp;lt;ref name=&amp;quot;kaupp&amp;quot;&amp;gt;DOI: 10.1038/nrn2789&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
In both [http://en.wikipedia.org/wiki/Arthropod arthropods] and [http://en.wikipedia.org/wiki/Vertebrate vertebrates] the detection of volatiles is completed by a complicated process which is mediated by soluble as well as transmembrane proteins &amp;lt;ref name=&amp;quot;pelosi&amp;quot;&amp;gt;DOI: 10.3389/fphys.2014.00320&amp;lt;/ref&amp;gt;.&lt;br /&gt;
It should be mentioned that the detection of [http://en.wikipedia.org/wiki/Pheromone pheromones] is also vital to microorganisms, as it regulates gene expression in what is termed [http://en.wikipedia.org/wiki/Quorum_sensing “quorum sensing”].  &lt;br /&gt;
In arthropods, most of what is known on chemosensory communication is based on research studies in insects. The process begins when a volatile (mostly a small [http://en.wikipedia.org/wiki/Hydrophobe hydrophobic] molecule) enters the chemosensilla lymph of an insect, or the mucus of a vertebrate in the nasal cavity ([[fig 1]]). Both media are abundant in soluble proteins which bind to the hydrophobic molecules, solubilize and carry the molecule to the [http://en.wikipedia.org/wiki/Chemoreceptor chemoreceptors] on the dendritic membrane of the olfactory receptor neuron &amp;lt;ref name=&amp;quot;kaupp&amp;quot; /&amp;gt;&amp;lt;ref name=&amp;quot;vogt&amp;quot;&amp;gt;Vogt RG (2005) Molecular basis of pheromone detection in insects. Comprehensive Insect Physiology, Biochemistry, Pharmacology and Molecular Biology, eds Gilbert LI, Iatro K, Gills S (Elsevier, London), Vol 3, pp 753–804.&amp;lt;/ref&amp;gt;.The chemical signal is thereby translated into an electrical signal which can cause an immediate response, or further processed with other signals in the insect&#039;s mushroom bodies or vertebrate&#039;s brain ([[fig 2]])&amp;lt;ref&amp;gt;doi: 10.3389/fncel.2012.00048&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;doi: 10.1146/annurev-ento-120811-153635&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== What are the differences and similarities between Arthropods and Vertebrates? ==&lt;br /&gt;
 &lt;br /&gt;
Though functionally similar, receptors as well as soluble proteins are structurally and genetically unrelated in insects and vertebrates (see [[fig 3]] for the putative evolution of proteins involved in chemosensory system).   &lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;Receptors&#039;&#039;&#039; &lt;br /&gt;
Most of the vertebrates&#039; chemosensory receptors are metabotropic and belong to the [[G protein-coupled receptors]]. Once the volatile binds to the receptor it initiates intracellular signal transduction &amp;lt;ref&amp;gt;doi: 10.1016/S0167-4838(00)00167-9&amp;lt;/ref&amp;gt;. On the other hand, arthropods&#039; and insects&#039; chemoreceptors are composed of two subunits: [http://en.wikipedia.org/wiki/Olfactory_receptor Receptor] and [http://en.wikipedia.org/wiki/Co-receptor Co-receptor] that upon interaction with the volatile or the complex of volatile-soluble protein, are activated and serve as an [http://en.wikipedia.org/wiki/Ion_channel ion channel]. The opening of the ion channel changes the [http://en.wikipedia.org/wiki/Membrane_potential membrane potential], and starts the inter-cellular signal transduction&amp;lt;ref name=&amp;quot;vogt&amp;quot; /&amp;gt;.[[Image:Chemoreceptors-insects.jpg|thumb|center|upright=2.5|Figure 4: Types of insect receptors. Figure 1 from Kaupp (2010), used with permission of Prof. U. Benjamin Kaupp.]]    &lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;Soluble proteins&#039;&#039;&#039;&lt;br /&gt;
These proteins which are concentrated in the sensillar lymph, solubilize and carry the volatile molecules to the receptor. &lt;br /&gt;
There are two main known types of soluble proteins that are involved in arthropods&#039; chemical communication: &#039;&#039;&#039;[http://proteopedia.org/w/Odorant_binding_protein Odorant binding proteins –OBPs]&#039;&#039;&#039;,&#039;&#039;&#039;[http://proteopedia.org/wiki/index.php/Chemosensory_protein Chemosensory protein-CSP]&#039;&#039;&#039; ([[fig 5]]). Though bearing the same name and participating in the same function, OBP of vertebrates and arthropods are two distinct families with completely different structure and origin&amp;lt;ref name=&amp;quot;pelosi&amp;quot; /&amp;gt;. Arthropods&#039; OBP are composed of alpha helices, while vertebrates&#039; OBP belong to the [http://en.wikipedia.org/wiki/Lipocalin Lipocalins] super family and have a beta-barrel structure (for structure comparison, see [[table 1]] and [[fig 5]]). Recently, another family of proteins has been suggested to play a role in ant chemical communication, &#039;&#039;&#039;[https://www.wikigenes.org/e/gene/e/10577.html Niemann-Pick type C2 protein-NPC2]&#039;&#039;&#039; &amp;lt;ref name=&amp;quot;ishida&amp;quot;&amp;gt;DOI: 10.1073/pnas.1323928111&amp;lt;/ref&amp;gt;. &lt;br /&gt;
[[Image:Fig 3 soluble proteins.png|thumb|center|upright=3|Figure 5. (a) An example for vertebrate&#039;s OBP-a pig OBP, PDB:[[1e06]]; (b) An example for insect&#039;s OBP- &#039;&#039;Bombyx mori&#039;&#039; PBP, PDB:[[1dqe]]; (c) An example for insect&#039;s CSP-&#039;&#039;Mamestra brassicae&#039;&#039; CSP2 PDB:[[1n8u]]]]&lt;br /&gt;
[[Image:Soluble proteins table.png|thumb|center|upright=2|Table 1. Summation of the main structure properties of soluble proteins types]]&lt;br /&gt;
&lt;br /&gt;
==Types of Soluble proteins in arthropods== &lt;br /&gt;
&amp;lt;StructureSection load=&#039;1OOH&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;&#039;&#039;Mamestra brassicae&#039;&#039; CSP2 PDB:[[1n8u]]&#039; scene=&#039;&#039;&amp;gt;&lt;br /&gt;
In each protein the conserved &amp;lt;font color=#FF7E00&amp;gt;&amp;lt;b&amp;gt;&#039;&#039;&#039;cysteins&#039;&#039;&#039;&amp;lt;/b&amp;gt;&amp;lt;/font&amp;gt;and the &amp;lt;font color=#FDEE00&amp;gt;&amp;lt;b&amp;gt;&#039;&#039;&#039;disulfide bonds&#039;&#039;&#039;&amp;lt;/b&amp;gt;&amp;lt;/font&amp;gt; are color marked.&lt;br /&gt;
*&#039;&#039;&#039;OBP&#039;&#039;&#039;&lt;br /&gt;
This family was the first soluble protein discovered in the chemosensory system of arthropods. Its general strcuture is of alpha helices that are compactly tied by 3 disulfide bridges formed by 6 conserved cystein residues. &lt;br /&gt;
The male fly of &#039;&#039;Drosophila melanogaster&#039;&#039; produces the pheromone 11-cis vaccenyl acetate which mediates aggregation behavior of other flies of the same species&amp;lt;ref&amp;gt;doi:10.1523/JNEUROSCI.0876-06.2006&amp;lt;/ref&amp;gt;. The detection of the pheromone, was shown to be mediated by pheromone-induced conformational shifts in the PBP, &amp;lt;scene name=&#039;61/614066/Lush/1&#039;&amp;gt;LUSH&amp;lt;/scene&amp;gt;. In fact, the triggering of the neuron was possible in the absence of the pheromone itself&amp;lt;ref&amp;gt;doi: m10.1016/j.cell.2008.04.046&amp;lt;/ref&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;CSP&#039;&#039;&#039;&lt;br /&gt;
This protein family which was discovered after the OBP family, though having a similar alpha helice structure, is shorter and bear only 4 conserved cysteins that forms 2 disulfide bridges. &lt;br /&gt;
In the moth &#039;&#039;Mamestra brassicae&#039;&#039; a member of the CSP family, CSPMbraA6, was isolated from the moth antennae. It was shown that the protein can bind &amp;lt;scene name=&#039;61/614066/Mamestra_brassicae_csp/1&#039;&amp;gt;three molecules of its ligand, 12-bromo-dodecanol&amp;lt;/scene&amp;gt; at the same time&amp;lt;ref&amp;gt;doi: 10.1073/pnas.0836654100&amp;lt;/ref&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;NPC2&#039;&#039;&#039;&lt;br /&gt;
Recently, a new family of proteins have been suggested to play a role as a soluble protein. Until now NPC2 proteins were known to carry lipids and cholesterol molecules in the cells&amp;lt;ref&amp;gt;doi: 10.1016/j.bbalip.2004.08.007&amp;lt;/ref&amp;gt;, yet a member of this family was isolated from the antennae of the ant &#039;&#039;Camponatus japonicus&#039;&#039;&amp;lt;ref name=&amp;quot;ishida&amp;quot; /&amp;gt;. This protein has a beta-barrel shape and &amp;lt;scene name=&#039;61/614066/Npc2_cysteins/2&#039;&amp;gt;6 cysteins forming 3 disulfide bonds&amp;lt;/scene&amp;gt; (similar to classical vertebrates OBP). Another conserved feature is the&amp;lt;scene name=&#039;61/614066/Resid_in_the_cavity_gate/2&#039;&amp;gt;6 conserved hydrophobic residues at the gate of the cavity&amp;lt;/scene&amp;gt;, supposedly attracting the hydrophobic ligand to the cavity&amp;lt;ref&amp;gt;doi: 10.1074/jbc.M703848200.STRUCTURAL&amp;lt;/ref&amp;gt;. This first finding could explain the small number of known soluble proteins in some insects and other arthropods, relativity to their ability to sense large number of volatiles.    &lt;br /&gt;
&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
== See also == &lt;br /&gt;
*[[Odorant_binding_protein_3D_structures]]&lt;br /&gt;
*For comprehensive explanation about quorum sensing please turn to Fuqua et al. (2001) &amp;lt;ref&amp;gt;DOI: 10.1146/annurev.genet.35.102401.090913 &amp;lt;/ref&amp;gt;.&lt;br /&gt;
*for more information about the protein-ligand interaction, you may go to [[Odorant binding protein]].&lt;br /&gt;
== References ==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Nurit Eliash</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Odorant_binding_protein&amp;diff=2368880</id>
		<title>Odorant binding protein</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Odorant_binding_protein&amp;diff=2368880"/>
		<updated>2015-01-28T14:15:47Z</updated>

		<summary type="html">&lt;p&gt;Nurit Eliash: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;[[Image:Bombyx mori.jpg|thumb|upright=2|&#039;&#039;Bombyx mori&#039;&#039;, the silk moth, picture by [https://www.flickr.com/photos/depredator007/2522038240/ Fernando Cuenca]]]&lt;br /&gt;
[[Image:Bombykol.png|thumb|upright=1|Bombykol, a sex pheromone of &#039;&#039;Bombyx mori&#039;&#039;, from [http://pubchem.ncbi.nlm.nih.gov/compound/Bombykol#section=Top PubChem]]]&lt;br /&gt;
==Introduction==&lt;br /&gt;
Odorant-binding protein (OBP) are soluble proteins which involve in the processes of odorant detection in the olfactory sensilla &amp;lt;ref name=&amp;quot;Pelosi 2014&amp;quot;&amp;gt;doi: 10.3389/fphys.2014.00320&amp;lt;/ref&amp;gt;. Though functionally same, vertebrates and insects OBP have different origin and structure.&lt;br /&gt;
OBPs are important for insect olfaction. For instance, OBP76a (LUSH) in the fly [http://en.wikipedia.org/wiki/Drosophila_melanogaster &#039;&#039;Drosophila melanogaster&#039;&#039;] is required for the detection of the pheromone vaccenyl acetate &amp;lt;ref name=&amp;quot;Xu 2005&amp;quot;&amp;gt;doi: 10.1016/j.neuron.2004.12.031&amp;lt;/ref&amp;gt; and has been proven to adopt a conformation that activates the odorant receptor &amp;lt;ref name=&amp;quot;Laughlin 2008&amp;quot;&amp;gt;doi: 10.1016/j.cell.2008.04.046&amp;lt;/ref&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
==OBP in insects==&lt;br /&gt;
==== OBP Function ====&lt;br /&gt;
Despite five decades of intensive research, the exact roles of OBP and the mechanism by which the odorant receptor (OR) is activated are still in dispute &amp;lt;ref name=&amp;quot;Leal&amp;quot;&amp;gt;DOI: 10.1146/annurev-ento-120811-153635&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI: 10.1007/s00359-009-0461-4&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;A few functions have been suggested for OBP:&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
1. Solubelizing the odorant molecule and its transportation in the sensillar lymph.&lt;br /&gt;
&lt;br /&gt;
2. Protecting the odorant molecule from the odorant degrading enzymes, in the sensillar lymph.&lt;br /&gt;
&lt;br /&gt;
3. Activating of the odorant receptor on the dendrite membrane, by the odorant-OBP complex.&lt;br /&gt;
&lt;br /&gt;
4. Mediating the deactivation of the odorant molecule after the activation of the receptor.&lt;br /&gt;
&lt;br /&gt;
5. An organic anion (the protein has 9 negative charges).&lt;br /&gt;
&lt;br /&gt;
Of all, the first role of OBP as an odorant solubilizer and carrier is generally accepted.&lt;br /&gt;
&lt;br /&gt;
In order to explain the structure and function of these fascinating proteins, this page will further focus on a particular OBP - the well investigated &#039;&#039;[http://en.wikipedia.org/wiki/Bombyx_mori Bombyx mori]&#039;&#039; pheromone binding protein: [http://www.uniprot.org/uniprot/P34174 BmorPBP].&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
====&#039;&#039;Bombyx mori&#039;&#039; BmorPBP (lets talk about sex..)====&lt;br /&gt;
&amp;lt;StructureSection load=&#039;1ls8&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;&#039;&#039;Bombyx mori&#039;&#039; PBP -BmorPBP scene=&#039;&#039;&amp;gt;&lt;br /&gt;
Pheromone binding proteins (PBPs) are specialized members of the insect odorant-binding protein (OBP) super-family.   &lt;br /&gt;
The main purpose in the adult moth&#039;s short life is reproduction. In fact, the male and female moth invest all of their energy and resources hoping to reach to the ultimate goal-  mating. This long journey begins when the female moth releases a sex pheromone, usually in specific hours in the night &amp;lt;ref&amp;gt;doi: 10.1007/BF01946910&amp;lt;/ref&amp;gt;. &lt;br /&gt;
BmorPBP was first identified in the &#039;&#039;B. mori&#039;&#039; male antennae by Krieger et al. in 1996 &amp;lt;ref&amp;gt;doi: 10.1016/0965-1748(95)00096-8&amp;lt;/ref&amp;gt;, as the PBP of the first sex pheromone discovered ((E,Z)-10,12-hexadecadienol, or [http://en.wikipedia.org/wiki/Bombykol Bombykol]). The male moth needs to detect minute amount of the pheromone in the air, while following turbulent wind-born pheromone trail and response fast (experimental evidence shows a response time of 0.5 seconds&amp;lt;ref&amp;gt;doi: 10.1038/293161a0&amp;lt;/ref&amp;gt;). &lt;br /&gt;
&lt;br /&gt;
====BmorPBP structure and function====&lt;br /&gt;
The protein has 164 amino acids that forms 6-7 alpha helices (depends on the protein conformation). Three &amp;lt;font color=#FFEF00&amp;gt;&amp;lt;b&amp;gt;disulfide bonds&amp;lt;/b&amp;gt;&amp;lt;/font&amp;gt; formed by &amp;lt;scene name=&#039;68/683383/Cysteins6/1&#039;&amp;gt;6 cystein &amp;lt;/scene&amp;gt; residues tied four helices, and form the compact and robust structure of the protein. As expected from a soluble protein, its surface is covered with &amp;lt;scene name=&#039;68/683383/Charged_resid/1&#039;&amp;gt;charged residues&amp;lt;/scene&amp;gt;, which allows it to make interactions with the water molecule and solubilize in the sensillar lymph.&lt;br /&gt;
&lt;br /&gt;
====BmorPBP - ligand binding====&lt;br /&gt;
The protein natural ligand is the moth pheromone &amp;lt;scene name=&#039;68/683383/Bombykol_ligand_in_2p71/1&#039;&amp;gt;Bombykol&amp;lt;/scene&amp;gt;. However, it was demonstrated that other molecules can also bound to the protein cavity &amp;lt;ref&amp;gt;doi: 10.1016/j.str.2007.07.013&amp;lt;/ref&amp;gt;. The interaction with the ligand is being made by 4 alpha helices 1, 4, 5 and 6 in the core of the protein, which form the binding cavity &amp;lt;ref&amp;gt;doi: 10.1016/S1074-5521(00)00078-8&amp;lt;/ref&amp;gt;.    &lt;br /&gt;
Inside the binding cavity, &amp;lt;scene name=&#039;68/683383/Residues_interacting/1&#039;&amp;gt;non-charged residues&amp;lt;/scene&amp;gt; are interacting with the pheromone, mainly by van der waals bounds. Out of those residues, some are conserved across OBP of lepidopteran (&amp;lt;font color=#8DB600&amp;gt;&amp;lt;b&amp;gt;in green&amp;lt;/b&amp;gt;&amp;lt;/font&amp;gt;), and the rest are conserved in lepidopteran PBP only (&amp;lt;font color=#318CE7&amp;gt;&amp;lt;b&amp;gt;in light blue&amp;lt;/b&amp;gt;&amp;lt;/font&amp;gt;).   &lt;br /&gt;
In addition, the hydroxyl group of the pheromone bombykol forms a &amp;lt;scene name=&#039;68/683383/Ser56_interaction_with_oxg/2&#039;&amp;gt;hydrogen bond with the side chain of Ser56&amp;lt;/scene&amp;gt;, Ser56 in red, oxygens are in purple (O–O distance of 2.8 Å).  &lt;br /&gt;
&lt;br /&gt;
====Protein conformations====&lt;br /&gt;
[[Image:A -B forms without ligand.png|thumb|upright=2|The A and B forms without ligand (PDB IDs: [[1gm0]] and [[1ls8]]).]]&lt;br /&gt;
[[Image:A to b with ligand.png|thumb|upright=2|The A and B forms with ligand (PDB IDs: [[1gm0]] and [[1ls8]]).]]&lt;br /&gt;
&lt;br /&gt;
BmorPBP has two conformations: The &#039;&#039;&#039;&amp;quot;closed form&amp;quot; (A)&#039;&#039;&#039; and the &#039;&#039;&#039;&amp;quot;open form&amp;quot; (B)&#039;&#039;&#039;&amp;lt;ref&amp;gt;DOI: 10.1074/jbc.274.43.30950&amp;lt;/ref&amp;gt;. The bombykol and the alpha-helix located in the c-terminus of the protein compete for the binding site: when the c-terminus is inside the binding cavity it get&#039;s an alpha helix shape, and the protein is in its &amp;quot;close form&amp;quot; (B), whereas in the &amp;quot;open form&amp;quot; (A) the c-terminus is outside of the protein and has no defined secondary structure. Binding experiments have shown that the B-form binds 15 times higher than the A-form &amp;lt;ref&amp;gt;doi: 10.1073/pnas.0501447102&amp;lt;/ref&amp;gt;, therefore considered to be the carrier of the pheromone. The complex of the A-form and the pheromone, is then considered the form that activates the receptor.         &lt;br /&gt;
&lt;br /&gt;
The &amp;lt;scene name=&#039;68/683383/1dqe-1gm0/4&#039;&amp;gt;transition between the two conformation&amp;lt;/scene&amp;gt; is both pH and ligand dependent &amp;lt;ref&amp;gt;doi: 10.1073?pnas.251532998&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI: 10.1016/j.bbrc.2005.07.176&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;doi: 10.1073/pnas.1317706110&amp;lt;/ref&amp;gt;. In short, the B-form (c-terminus outside the cavity) occurs only at neutral pH and in the presence of the ligand. The A-form (c-terminus inside the cavity) occurs at both low and neutral pH, yet at the latter only in the absence of ligand. Therefore, in neutral pH when the ligand is binding to the protein in its A-form, the complex formation causes a change in conformation to the B-form. However, both A and B forms are equally distributed in the lymph.&lt;br /&gt;
{{Button Toggle AnimationOnPause}}&lt;br /&gt;
   &lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Conformation transition mechanism:&#039;&#039;&#039;&lt;br /&gt;
The c-terminus of the protein bears mostly &amp;lt;scene name=&#039;68/683383/Hydrophobic_resid/1&#039;&amp;gt;non-polar amino acids&amp;lt;/scene&amp;gt;. Yet on the surface of the helix there are three exceptional amino acids: Asp-132, Glu-137, and Glu-141, which are conserved in moth PBP &amp;lt;ref&amp;gt;doi: 10.1016/j.bbrc.2005.07.176&amp;lt;/ref&amp;gt;. Of these, residues &amp;lt;scene name=&#039;68/683383/Asp132/1&#039;&amp;gt;Asp-132&amp;lt;/scene&amp;gt; (and Glu-141, if present) triggers the formation of the alpha-helix upon protonation at low pH. This causes the transition from the &amp;lt;scene name=&#039;68/683383/B_form_with_ligand/1&#039;&amp;gt;&amp;quot;A form&amp;quot;&amp;lt;/scene&amp;gt;, to the &amp;lt;scene name=&#039;68/683383/A_form_with_ligand/1&#039;&amp;gt;&amp;quot;B form&amp;quot;&amp;lt;/scene&amp;gt; and the ejaculation of the ligand from the binding pocket, which is replaced by the formatted alpha helix&amp;lt;ref&amp;gt;doi: 10.1016/j.bbrc&amp;lt;/ref&amp;gt;. &lt;br /&gt;
Studies on other lepidopterans that show a similar pH dependent conformation suggests that this model is a general model moth PBP&amp;lt;ref name=&amp;quot;Leal&amp;quot; /&amp;gt;. Nonetheless, the enormous diversity among insects is not allowing us to assume this model is true for all insects&#039; OBPs.&lt;br /&gt;
[[Image:N model extended.png|thumb|upright=2.5|Figure 1. The events prior the neuron excitation, following the &amp;quot;N model&amp;quot; suggested by Kaissling (2009)&amp;lt;ref name=&amp;quot;kaissling&amp;quot;&amp;gt;DOI: 10.1007/s00359-009-0461-4&amp;lt;/ref&amp;gt; The pheromone enters the sensillar lymph through a pore in cuticle. The pheromone can then be degraded by the ODE (1) -or- bind to the A and B protein forms (2a and 2b, respectively).  When the complex arrives at the low pH near the membrane, the transition is in favor of the A-form, (3) in which the -c-terminus is forming an alpha helix inside the binding cavity, pushing out the pheromone. The activation of the complex of odorant receptor and coreceptor (OR:OR-CO), is induced by ether the complex of pheromone-PBP, or by the pheromone alone (5, two options). The B-form can also act as a scavenger, as it mediates the deactivation of the pheromone (6) and releases it to the ODE (6)]] &lt;br /&gt;
====Receptor activation====&lt;br /&gt;
Two theories have been proposed for the activation of the odorant receptors located on the dendrtirte membrane. One theory suggests that the pheromone-PBP complex is needed for the receptor activation, while the second theory argue that the pheromone itself is sufficient for the activation of the receptor.   &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;Activation by the pheromone alone&#039;&#039;&#039; &lt;br /&gt;
This model is supported by the pH dependent conformation transition, that is described above. The bulk of the sensillar lymph is in neutral pH (6.5-7), while environment near the dendrite membrane bears a low pH (4.5), due to the negative charges on the surface of the membrane &amp;lt;ref&amp;gt;DOI: 10.1016/0040-8166(84)90004-1&amp;lt;/ref&amp;gt;, which cause the accumulation of positively charged kations near the membrane surface (20-50 nm)&amp;lt;ref name=&amp;quot;kaissling&amp;quot; /&amp;gt;. According to this model, the pheromone is entering the sensillar lymph through a pore in the cuticle, then it can be either degraded by odorant degrading enzymes (ODE) or bind to a PBP (of both forms). Once the complex is arriving to the low pH environment near the dendrite membrane the PBP will shift to the A-form, thereby ejaculating the ligand from the binding pocket, allowing it to activate the OR:CO-OR complex and the cellular signal transduction begins.      &lt;br /&gt;
 &lt;br /&gt;
*&#039;&#039;&#039;Activation by the complex pheromone-PBP&#039;&#039;&#039;&lt;br /&gt;
An alternative mode of action was proposed for the receptor activation in &#039;&#039;Drosophila melanogaster&#039;&#039;, where it was found that the complex of pheromone-PBP is required for the activity of pheromone-sensitive neurons &amp;lt;ref&amp;gt;DOI: 10.1016/j.neuron.2004.12.031&amp;lt;ref/&amp;gt;&amp;lt;ref&amp;gt;doi: 10.1016/j.cell.2008.04.046&amp;lt;ref/&amp;gt; &lt;br /&gt;
&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== See also == &lt;br /&gt;
*[[Odorant_binding_protein_3D_structures]]&lt;br /&gt;
*[[Chemical communication in arthropods]]&lt;br /&gt;
*[[Pheromone binding protein]]&lt;br /&gt;
== References ==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Nurit Eliash</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Odorant_binding_protein&amp;diff=2368879</id>
		<title>Odorant binding protein</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Odorant_binding_protein&amp;diff=2368879"/>
		<updated>2015-01-28T14:13:13Z</updated>

		<summary type="html">&lt;p&gt;Nurit Eliash: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;[[Image:Bombyx mori.jpg|thumb|upright=2|&#039;&#039;Bombyx mori&#039;&#039;, the silk moth, picture by [https://www.flickr.com/photos/depredator007/2522038240/ Fernando Cuenca]]]&lt;br /&gt;
[[Image:Bombykol.png|thumb|upright=1|Bombykol, a sex pheromone of &#039;&#039;Bombyx mori&#039;&#039;, from [http://pubchem.ncbi.nlm.nih.gov/compound/Bombykol#section=Top PubChem]]]&lt;br /&gt;
==Introduction==&lt;br /&gt;
Odorant-binding protein (OBP) are soluble proteins which involve in the processes of odorant detection in the olfactory sensilla &amp;lt;ref name=&amp;quot;Pelosi 2014&amp;quot;&amp;gt;doi: 10.3389/fphys.2014.00320&amp;lt;/ref&amp;gt;. Though functionally same, vertebrates and insects OBP have different origin and structure.&lt;br /&gt;
OBPs are important for insect olfaction. For instance, OBP76a (LUSH) in the fly [http://en.wikipedia.org/wiki/Drosophila_melanogaster &#039;&#039;Drosophila melanogaster&#039;&#039;] is required for the detection of the pheromone vaccenyl acetate &amp;lt;ref name=&amp;quot;Xu 2005&amp;quot;&amp;gt;doi: 10.1016/j.neuron.2004.12.031&amp;lt;/ref&amp;gt; and has been proven to adopt a conformation that activates the odorant receptor &amp;lt;ref name=&amp;quot;Laughlin 2008&amp;quot;&amp;gt;doi: 10.1016/j.cell.2008.04.046&amp;lt;/ref&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
==OBP in insects==&lt;br /&gt;
==== OBP Function ====&lt;br /&gt;
Despite five decades of intensive research, the exact roles of OBP and the mechanism by which the odorant receptor (OR) is activated are still in dispute &amp;lt;ref name=&amp;quot;Leal&amp;quot;&amp;gt;DOI: 10.1146/annurev-ento-120811-153635&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI: 10.1007/s00359-009-0461-4&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;A few functions have been suggested for OBP:&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
1. Solubelizing the odorant molecule and its transportation in the sensillar lymph.&lt;br /&gt;
&lt;br /&gt;
2. Protecting the odorant molecule from the odorant degrading enzymes, in the sensillar lymph.&lt;br /&gt;
&lt;br /&gt;
3. Activating of the odorant receptor on the dendrite membrane, by the odorant-OBP complex.&lt;br /&gt;
&lt;br /&gt;
4. Mediating the deactivation of the odorant molecule after the activation of the receptor.&lt;br /&gt;
&lt;br /&gt;
5. An organic anion (the protein has 9 negative charges).&lt;br /&gt;
&lt;br /&gt;
Of all, the first role of OBP as an odorant solubilizer and carrier is generally accepted.&lt;br /&gt;
&lt;br /&gt;
In order to explain the structure and function of these fascinating proteins, this page will further focus on a particular OBP - the well investigated &#039;&#039;[http://en.wikipedia.org/wiki/Bombyx_mori Bombyx mori]&#039;&#039; pheromone binding protein: [http://www.uniprot.org/uniprot/P34174 BmorPBP].&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
====&#039;&#039;Bombyx mori&#039;&#039; BmorPBP (lets talk about sex..)====&lt;br /&gt;
&amp;lt;StructureSection load=&#039;1ls8&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;&#039;&#039;Bombyx mori&#039;&#039; PBP -BmorPBP scene=&#039;&#039;&amp;gt;&lt;br /&gt;
Pheromone binding proteins (PBPs) are specialized members of the insect odorant-binding protein (OBP) super-family.   &lt;br /&gt;
The main purpose in the adult moth&#039;s short life is reproduction. In fact, the male and female moth invest all of their energy and resources hoping to reach to the ultimate goal-  mating. This long journey begins when the female moth releases a sex pheromone, usually in specific hours in the night &amp;lt;ref&amp;gt;doi: 10.1007/BF01946910&amp;lt;/ref&amp;gt;. &lt;br /&gt;
BmorPBP was first identified in the &#039;&#039;B. mori&#039;&#039; male antennae by Krieger et al. in 1996 &amp;lt;ref&amp;gt;doi: 10.1016/0965-1748(95)00096-8&amp;lt;/ref&amp;gt;, as the PBP of the first sex pheromone discovered ((E,Z)-10,12-hexadecadienol, or [http://en.wikipedia.org/wiki/Bombykol Bombykol]). The male moth needs to detect minute amount of the pheromone in the air, while following turbulent wind-born pheromone trail and response fast (experimental evidence shows a response time of 0.5 seconds&amp;lt;ref&amp;gt;doi: 10.1038/293161a0&amp;lt;/ref&amp;gt;). &lt;br /&gt;
&lt;br /&gt;
====BmorPBP structure and function====&lt;br /&gt;
The protein has 164 amino acids that forms 6-7 alpha helices (depends on the protein conformation). Three &amp;lt;font color=#FFEF00&amp;gt;&amp;lt;b&amp;gt;disulfide bonds&amp;lt;/b&amp;gt;&amp;lt;/font&amp;gt; formed by &amp;lt;scene name=&#039;68/683383/Cysteins6/1&#039;&amp;gt;6 cystein &amp;lt;/scene&amp;gt; residues tied four helices, and form the compact and robust structure of the protein. As expected from a soluble protein, its surface is covered with &amp;lt;scene name=&#039;68/683383/Charged_resid/1&#039;&amp;gt;charged residues&amp;lt;/scene&amp;gt;, which allows it to make interactions with the water molecule and solubilize in the sensillar lymph.&lt;br /&gt;
&lt;br /&gt;
====BmorPBP - ligand binding====&lt;br /&gt;
The protein natural ligand is the moth pheromone &amp;lt;scene name=&#039;68/683383/Bombykol_ligand_in_2p71/1&#039;&amp;gt;Bombykol&amp;lt;/scene&amp;gt;. However, it was demonstrated that other molecules can also bound to the protein cavity &amp;lt;ref&amp;gt;doi: 10.1016/j.str.2007.07.013&amp;lt;/ref&amp;gt;. The interaction with the ligand is being made by 4 alpha helices 1, 4, 5 and 6 in the core of the protein, which form the binding cavity &amp;lt;ref&amp;gt;doi: 10.1016/S1074-5521(00)00078-8&amp;lt;/ref&amp;gt;.    &lt;br /&gt;
Inside the binding cavity, &amp;lt;scene name=&#039;68/683383/Residues_interacting/1&#039;&amp;gt;non-charged residues&amp;lt;/scene&amp;gt; are interacting with the pheromone, mainly by van der waals bounds. Out of those residues, some are conserved across OBP of lepidopteran (&amp;lt;font color=#8DB600&amp;gt;&amp;lt;b&amp;gt;in green&amp;lt;/b&amp;gt;&amp;lt;/font&amp;gt;), and the rest are conserved in lepidopteran PBP only (&amp;lt;font color=#318CE7&amp;gt;&amp;lt;b&amp;gt;in light blue&amp;lt;/b&amp;gt;&amp;lt;/font&amp;gt;).   &lt;br /&gt;
In addition, the hydroxyl group of the pheromone bombykol forms a &amp;lt;scene name=&#039;68/683383/Ser56_interaction_with_oxg/2&#039;&amp;gt;hydrogen bond with the sidechain of Ser56&amp;lt;/scene&amp;gt;, Ser56 in red, oxygens are in purple (O–O distance of 2.8 Å).  &lt;br /&gt;
&lt;br /&gt;
====Protein conformations====&lt;br /&gt;
[[Image:A -B forms without ligand.png|thumb|upright=2|The A and B forms without ligand (PDB IDs: [[1gm0]] and [[1ls8]]).]]&lt;br /&gt;
[[Image:A to b with ligand.png|thumb|upright=2|The A and B forms with ligand (PDB IDs: [[1gm0]] and [[1ls8]]).]]&lt;br /&gt;
&lt;br /&gt;
BmorPBP has two conformations: The &#039;&#039;&#039;&amp;quot;closed form&amp;quot; (A)&#039;&#039;&#039; and the &#039;&#039;&#039;&amp;quot;open form&amp;quot; (B)&#039;&#039;&#039;&amp;lt;ref&amp;gt;DOI: 10.1074/jbc.274.43.30950&amp;lt;/ref&amp;gt;. The bombykol and the alpha-helix located in the c-terminus of the protein compete for the binding site: when the c-terminus is inside the binding cavity it get&#039;s an alpha helix shape, and the protein is in its &amp;quot;close form&amp;quot; (B), whereas in the &amp;quot;open form&amp;quot; (A) the c-terminus is outside of the protein and has no defined secondary structure. Binding experiments have shown that the B-form binds 15 times higher than the A-form &amp;lt;ref&amp;gt;doi: 10.1073/pnas.0501447102&amp;lt;/ref&amp;gt;, therefore considered to be the carrier of the pheromone. The complex of the A-form and the pheromone, is then considered the form that activates the receptor.         &lt;br /&gt;
&lt;br /&gt;
The &amp;lt;scene name=&#039;68/683383/1dqe-1gm0/4&#039;&amp;gt;transition between the two conformation&amp;lt;/scene&amp;gt; is both pH and ligand dependent &amp;lt;ref&amp;gt;doi: 10.1073?pnas.251532998&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI: 10.1016/j.bbrc.2005.07.176&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;doi: 10.1073/pnas.1317706110&amp;lt;/ref&amp;gt;. In short, the B-form (c-terminus outside the cavity) occurs only at neutral pH and in the presence of the ligand. The A-form (c-terminus inside the cavity) occurs at both low and neutral pH, yet at the latter only in the absence of ligand. Therefore, in neutral pH when the ligand is binding to the protein in its A-form, the complex formation causes a change in conformation to the B-form. However, both A and B forms are equally distributed in the lymph.&lt;br /&gt;
{{Button Toggle AnimationOnPause}}&lt;br /&gt;
   &lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Conformation transition mechanism:&#039;&#039;&#039;&lt;br /&gt;
The c-terminus of the protein bears mostly &amp;lt;scene name=&#039;68/683383/Hydrophobic_resid/1&#039;&amp;gt;non-polar amino acids&amp;lt;/scene&amp;gt;. Yet on the surface of the helix there are three exceptional amino acids: Asp-132, Glu-137, and Glu-141, which are conserved in moth PBP &amp;lt;ref&amp;gt;doi: 10.1016/j.bbrc.2005.07.176&amp;lt;/ref&amp;gt;. Of these, residues &amp;lt;scene name=&#039;68/683383/Asp132/1&#039;&amp;gt;Asp-132&amp;lt;/scene&amp;gt; (and Glu-141, if present) triggers the formation of the alpha-helix upon protonation at low pH. This causes the transition from the &amp;lt;scene name=&#039;68/683383/B_form_with_ligand/1&#039;&amp;gt;&amp;quot;A form&amp;quot;&amp;lt;/scene&amp;gt;, to the &amp;lt;scene name=&#039;68/683383/A_form_with_ligand/1&#039;&amp;gt;&amp;quot;B form&amp;quot;&amp;lt;/scene&amp;gt; and the ejaculation of the ligand from the binding pocket, which is replaced by the formatted alpha helix&amp;lt;ref&amp;gt;doi: 10.1016/j.bbrc&amp;lt;/ref&amp;gt;. &lt;br /&gt;
Studies on other Lepidopterans that show a similar pH dependent conformation suggests that this model is a general model moth PBP&amp;lt;ref name=&amp;quot;Leal&amp;quot; /&amp;gt;. Nonetheless, the enormous diversity among insects is not allowing us to assume this model is true for all insects&#039; OBPs.&lt;br /&gt;
[[Image:N model extended.png|thumb|upright=2.5|Figure 1. The events prior the neuron excitation, following the &amp;quot;N model&amp;quot; suggested by Kaissling (2009)&amp;lt;ref name=&amp;quot;kaissling&amp;quot;&amp;gt;DOI: 10.1007/s00359-009-0461-4&amp;lt;/ref&amp;gt; The pheromone enters the sensillar lymph through a pore in cuticle. The pheromone can then be degraded by the ODE (1) -or- bind to the A and B protein forms (2a and 2b, respectively).  When the complex arrives at the low pH near the membrane, the transition is in favor of the A-form, (3) in which the -c-terminus is forming an alpha helix inside the binding cavity, pushing out the pheromone. The activation of the complex of odorant receptor and coreceptor (OR:OR-CO), is induced by ether the complex of pheromone-PBP, or by the pheromone alone (5, two options). The B-form can also act as a scavenger, as it mediates the deactivation of the pheromone (6) and releases it to the ODE (6)]] &lt;br /&gt;
====Receptor activation====&lt;br /&gt;
Two theories have been proposed for the activation of the odorant receptors located on the dendrtirte membrane. One theory suggests that the pheromone-PBP complex is needed for the receptor activation, while the second theory argue that the pheromone itself is sufficient for the activation of the receptor.   &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;Activation by the pheromone alone&#039;&#039;&#039; &lt;br /&gt;
This model is supported by the pH dependent conformation transition, that is described above. The bulk of the sensillar lymph is in neutral pH (6.5-7), while environment near the dendrite membrane bears a low pH (4.5), due to the negative charges on the surface of the membrane &amp;lt;ref&amp;gt;DOI: 10.1016/0040-8166(84)90004-1&amp;lt;/ref&amp;gt;, which cause the accumulation of positively charged kations near the membrane surface (20-50 nm)&amp;lt;ref name=&amp;quot;kaissling&amp;quot; /&amp;gt;. According to this model, the pheromone is entering the sensillar lymph through a pore in the cuticle, then it can be either degraded by odorant degrading enzymes (ODE) or bind to a PBP (of both forms). Once the complex is arriving to the low pH environment near the dendrite membrane the PBP will shift to the A-form, thereby ejaculating the ligand from the binding pocket, allowing it to activate the OR:CO-OR complex and the cellular signal transduction begins.      &lt;br /&gt;
 &lt;br /&gt;
*&#039;&#039;&#039;Activation by the complex pheromone-PBP&#039;&#039;&#039;&lt;br /&gt;
An alternative mode of action was proposed for the receptor activation in &#039;&#039;Drosophila melanogaster&#039;&#039;, where it was found that the complex of pheromone-PBP is required for the activity of pheromone-sensitive neurons &amp;lt;ref&amp;gt;DOI: 10.1016/j.neuron.2004.12.031&amp;lt;ref/&amp;gt;&amp;lt;ref&amp;gt;doi: 10.1016/j.cell.2008.04.046&amp;lt;ref/&amp;gt; &lt;br /&gt;
&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== See also == &lt;br /&gt;
*[[Odorant_binding_protein_3D_structures]]&lt;br /&gt;
*[[Chemical communication in arthropods]]&lt;br /&gt;
*[[Pheromone binding protein]]&lt;br /&gt;
== References ==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Nurit Eliash</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Odorant_binding_protein&amp;diff=2368878</id>
		<title>Odorant binding protein</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Odorant_binding_protein&amp;diff=2368878"/>
		<updated>2015-01-28T14:08:33Z</updated>

		<summary type="html">&lt;p&gt;Nurit Eliash: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;[[Image:Bombyx mori.jpg|thumb|upright=2|&#039;&#039;Bombyx mori&#039;&#039;, the silk moth, picture by [https://www.flickr.com/photos/depredator007/2522038240/ Fernando Cuenca]]]&lt;br /&gt;
[[Image:Bombykol.png|thumb|upright=1|Bombykol, a sex pheromone of &#039;&#039;Bombyx mori&#039;&#039;, from [http://pubchem.ncbi.nlm.nih.gov/compound/Bombykol#section=Top PubChem]]]&lt;br /&gt;
==Introduction==&lt;br /&gt;
Odorant-binding protein (OBP) are soluble proteins which involve in the processes of odorant detection in the olfactory sensilla &amp;lt;ref name=&amp;quot;Pelosi 2014&amp;quot;&amp;gt;doi: 10.3389/fphys.2014.00320&amp;lt;/ref&amp;gt;. Though functionally same, vertebrates and insects OBP have different origin and structure.&lt;br /&gt;
OBPs are important for insect olfaction. For instance, OBP76a (LUSH) in the fly [http://en.wikipedia.org/wiki/Drosophila_melanogaster &#039;&#039;Drosophila melanogaster&#039;&#039;] is required for the detection of the pheromone vaccenyl acetate &amp;lt;ref name=&amp;quot;Xu 2005&amp;quot;&amp;gt;doi: 10.1016/j.neuron.2004.12.031&amp;lt;/ref&amp;gt; and has been proven to adopt a conformation that activates the odorant receptor &amp;lt;ref name=&amp;quot;Laughlin 2008&amp;quot;&amp;gt;doi: 10.1016/j.cell.2008.04.046&amp;lt;/ref&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
==OBP in insects==&lt;br /&gt;
==== OBP Function ====&lt;br /&gt;
Despite five decades of intensive research, the exact roles of OBP and the mechanism by which the odorant receptor (OR) is activated are still in dispute &amp;lt;ref name=&amp;quot;Leal&amp;quot;&amp;gt;DOI: 10.1146/annurev-ento-120811-153635&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI: 10.1007/s00359-009-0461-4&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;A few functions have been suggested for OBP:&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
1. Solubelizing the odorant molecule and its transportation in the sensillar lymph.&lt;br /&gt;
&lt;br /&gt;
2. Protecting the odorant molecule from the odorant degrading enzymes, in the sensillar lymph.&lt;br /&gt;
&lt;br /&gt;
3. Activating of the odorant receptor on the dendrite membrane, by the odorant-OBP complex.&lt;br /&gt;
&lt;br /&gt;
4. Mediating the deactivation of the odorant molecule after the activation of the receptor.&lt;br /&gt;
&lt;br /&gt;
5. An organic anion (the protein has 9 negative charges).&lt;br /&gt;
&lt;br /&gt;
Of all, the first role of OBP as an odorant solubilizer and carrier is generally accepted.&lt;br /&gt;
&lt;br /&gt;
In order to explain the structure and function of these fascinating proteins, this page will further focus on a particular OBP - the well investigated &#039;&#039;[http://en.wikipedia.org/wiki/Bombyx_mori Bombyx mori]&#039;&#039; pheromone binding protein: [http://www.uniprot.org/uniprot/P34174 BmorPBP].&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
====&#039;&#039;Bombyx mori&#039;&#039; BmorPBP (lets talk about sex..)====&lt;br /&gt;
&amp;lt;StructureSection load=&#039;1ls8&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;&#039;&#039;Bombyx mori&#039;&#039; PBP -BmorPBP scene=&#039;&#039;&amp;gt;&lt;br /&gt;
Pheromone binding proteins (PBPs) are specialized members of the insect odorant-binding protein (OBP) super-family.   &lt;br /&gt;
The main purpose in the adult moth&#039;s short life is reproduction. In fact, the male and female moth invest all of their energy and resources hoping to reach to the ultimate goal-  mating. This long journey begins when the female moth releases a sex pheromone, usually in specific hours in the night &amp;lt;ref&amp;gt;doi: 10.1007/BF01946910&amp;lt;/ref&amp;gt;. &lt;br /&gt;
BmorPBP was first identified in the &#039;&#039;B. mori&#039;&#039; male antennae by Krieger et al. in 1996 &amp;lt;ref&amp;gt;doi: 10.1016/0965-1748(95)00096-8&amp;lt;/ref&amp;gt;, as the PBP of the first sex pheromone discovered ((E,Z)-10,12-hexadecadienol, or [http://en.wikipedia.org/wiki/Bombykol Bombykol]). The male moth needs to detect minute amount of the pheromone in the air, while following turbulent wind-born pheromone trail and response fast (experimental evidence shows a response time of 0.5 seconds&amp;lt;ref&amp;gt;doi: 10.1038/293161a0&amp;lt;/ref&amp;gt;). &lt;br /&gt;
&lt;br /&gt;
====BmorPBP structure and function====&lt;br /&gt;
The protein has 164 amino acids that forms 6-7 alpha helices (depends on the protein conformation). Three &amp;lt;font color=#FFEF00&amp;gt;&amp;lt;b&amp;gt;disulfide bonds&amp;lt;/b&amp;gt;&amp;lt;/font&amp;gt; formed by &amp;lt;scene name=&#039;68/683383/Cysteins6/1&#039;&amp;gt;6 cystein &amp;lt;/scene&amp;gt; residues tied four helices, and form the compact and robust structure of the protein. As expected from a soluble protein, its surface is covered with &amp;lt;scene name=&#039;68/683383/Charged_resid/1&#039;&amp;gt;charged residues&amp;lt;/scene&amp;gt;, which allows it to make interactions with the water molecule and solubilize in the sensillar lymph.&lt;br /&gt;
&lt;br /&gt;
====BmorPBP - ligand binding====&lt;br /&gt;
The protein natural ligand is the moth pheromone &amp;lt;scene name=&#039;68/683383/Bombykol_ligand_in_2p71/1&#039;&amp;gt;Bombykol&amp;lt;/scene&amp;gt;. However, it was demonstrated that other molecules can also bound to the protein cavity &amp;lt;ref&amp;gt;doi: 10.1016/j.str.2007.07.013&amp;lt;/ref&amp;gt;. The interaction with the ligand is being made by 4 alpha helices 1, 4, 5 and 6 in the core of the protein, which form the binding cavity &amp;lt;ref&amp;gt;doi: 10.1016/S1074-5521(00)00078-8&amp;lt;/ref&amp;gt;.    &lt;br /&gt;
Inside the binding cavity, &amp;lt;scene name=&#039;68/683383/Residues_interacting/1&#039;&amp;gt;non-charged residues&amp;lt;/scene&amp;gt; are interacting with the pheromone, mainly by van der waals bounds. Out of those residues, some are conserved across OBP of lepidopteran (&amp;lt;font color=#8DB600&amp;gt;&amp;lt;b&amp;gt;in green&amp;lt;/b&amp;gt;&amp;lt;/font&amp;gt;), and the rest are conserved in lepidopteran PBP only (&amp;lt;font color=#318CE7&amp;gt;&amp;lt;b&amp;gt;in light blue&amp;lt;/b&amp;gt;&amp;lt;/font&amp;gt;).   &lt;br /&gt;
In addition, the hydroxyl group of the pheromone bombykol forms a &amp;lt;scene name=&#039;68/683383/Ser56_interaction_with_oxg/2&#039;&amp;gt;hydrogen bond with the sidechain of Ser56&amp;lt;/scene&amp;gt;, Ser56 in red, oxygens are in purple (O–O distance of 2.8 Å).  &lt;br /&gt;
&lt;br /&gt;
====Protein conformations====&lt;br /&gt;
[[Image:A -B forms without ligand.png|thumb|upright=2|The A and B forms without ligand (PDB IDs: [[1gm0]] and [[1ls8]]).]]&lt;br /&gt;
[[Image:A to b with ligand.png|thumb|upright=2|The A and B forms with ligand (PDB IDs: [[1gm0]] and [[1ls8]]).]]&lt;br /&gt;
&lt;br /&gt;
BmorPBP has two conformations: The &#039;&#039;&#039;&amp;quot;closed form&amp;quot; (A)&#039;&#039;&#039; and the &#039;&#039;&#039;&amp;quot;open form&amp;quot; (B)&#039;&#039;&#039;&amp;lt;ref&amp;gt;DOI: 10.1074/jbc.274.43.30950&amp;lt;/ref&amp;gt;. The bombykol and the alpha-helix located in the c-terminus of the protein compete for the binding site: when the c-terminus is inside the binding cavity it get&#039;s an alpha helix shape, and the protein is in its &amp;quot;close form&amp;quot; (B), whereas in the &amp;quot;open form&amp;quot; (A) the c-terminus is outside of the protein and has no defined secondary structure. Binding experiments have shown that the B-form binds 15 times higher than the A-form &amp;lt;ref&amp;gt;doi: 10.1073/pnas.0501447102&amp;lt;/ref&amp;gt;, therefore considered to be the carrier of the pheromone. The complex of the A-form and the pheromone, is then considered the form that activates the receptor.         &lt;br /&gt;
&lt;br /&gt;
The &amp;lt;scene name=&#039;68/683383/1dqe-1gm0/4&#039;&amp;gt;transition between the two conformation&amp;lt;/scene&amp;gt; is both pH and ligand dependent &amp;lt;ref&amp;gt;doi: 10.1073?pnas.251532998&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI: 10.1016/j.bbrc.2005.07.176&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;doi: 10.1073/pnas.1317706110&amp;lt;/ref&amp;gt;. In short, the B-form (c-terminus outside the cavity) occurs only at neutral pH and in the presence of the ligand. The A-form (c-terminus inside the cavity) occurs at both low and neutral pH, yet at the latter only in the absence of ligand. Therefore, in neutral pH when the ligand is binding to the protein in its A-form, the complex formation causes a change in conformation to the B-form. However, both A and B forms are equally distributed in the lymph.&lt;br /&gt;
{{Button Toggle AnimationOnPause}}&lt;br /&gt;
   &lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Conformation transition mechanism:&#039;&#039;&#039;&lt;br /&gt;
The c-terminus of the protein bears mostly &amp;lt;scene name=&#039;68/683383/Hydrophobic_resid/1&#039;&amp;gt;non-polar amino acids&amp;lt;/scene&amp;gt;. Yet on the surface of the helix there are three exceptional amino acids: Asp-132, Glu-137, and Glu-141, which are conserved in moth PBP &amp;lt;ref&amp;gt;doi: 10.1016/j.bbrc.2005.07.176&amp;lt;/ref&amp;gt;. Of these, residues &amp;lt;scene name=&#039;68/683383/Asp132/1&#039;&amp;gt;Asp-132&amp;lt;/scene&amp;gt; (and Glu-141, if present) triggers the formation of the alpha-helix upon protonation at low pH. This causes the transition from the &amp;lt;scene name=&#039;68/683383/B_form_with_ligand/1&#039;&amp;gt;&amp;quot;A form&amp;quot;&amp;lt;/scene&amp;gt;, to the &amp;lt;scene name=&#039;68/683383/A_form_with_ligand/1&#039;&amp;gt;&amp;quot;B form&amp;quot;&amp;lt;/scene&amp;gt; and the ejaculation of the ligand from the binding pocket, which is replaced by the formatted alpha helix&amp;lt;ref&amp;gt;doi: 10.1016/j.bbrc&amp;lt;/ref&amp;gt;. &lt;br /&gt;
Studies on other Lepidopterans that show a similar pH dependent conformation suggests that this model is a general model moth PBP&amp;lt;ref name=&amp;quot;Leal&amp;quot; /&amp;gt;. Nonetheless, the enormous diversity among insects is not allowing us to assume this model is true for all insects&#039; OBPs.&lt;br /&gt;
[[Image:N model extended.png|thumb|upright=2.5|Figure 1. The events prior the neuron excitation, following the &amp;quot;N model&amp;quot; suggested by Kaissling (2009)&amp;lt;ref name=&amp;quot;kaissling&amp;quot;&amp;gt;DOI: 10.1007/s00359-009-0461-4&amp;lt;/ref&amp;gt; The pheromone enters the sensillar lymph through a pore in cuticle. The pheromone can then be degraded by the ODE (1) -or- bind to the A and B protein forms (2a and 2b, respectively).  When the complex arrives at the low pH near the membrane, the transition is in favor of the A-form, (3) in which the -c-terminus is forming an alpha helix inside the binding cavity, pushing out the pheromone. The activation of the complex of odorant receptor and coreceptor (OR:OR-CO), is induced by ether the complex of pheromone-PBP, or by the pheromone alone (5, two options). The B-form can also act as a scavenger, as it mediates the deactivation of the pheromone (6) and releases it to the ODE (6)]] &lt;br /&gt;
====Receptor activation====&lt;br /&gt;
Two theories have been proposed for the activation of the odorant receptors located on the dendrtirte membrane. One theory suggests that the pheromone-PBP complex is needed for the receptor activation, while the second theory argue that the pheromone itself is sufficient for the activation of the receptor.   &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;Activation by the pheromone alone&#039;&#039;&#039; &lt;br /&gt;
This model is supported by the pH dependent conformation transition, that is described above. The bulk of the sensillar lymph is in neutral pH (6.5-7), while environment near the dendrite membrane bears a low pH (4.5), due to the negative charges on the surface of the membrane &amp;lt;ref&amp;gt;DOI: 10.1016/0040-8166(84)90004-1&amp;lt;/ref&amp;gt;, which cause the accumulation of positively charged kations near the membrane surface (20-50 nm)&amp;lt;ref name=&amp;quot;kaissling&amp;quot; /&amp;gt;&amp;lt;ref&amp;gt;. According to this model, the pheromone is entering the sensillar lymph through a pore in the cuticle, then it can be either degraded by odorant degrading enzymes (ODE) or bind to a PBP (of both forms). Once the complex is arriving to the low pH environment near the dendrite membrane the PBP will shift to the A-form, thereby ejaculating the ligand from the binding pocket, allowing it to activate the OR:CO-OR complex and the cellular signal transduction begins.      &lt;br /&gt;
 &lt;br /&gt;
*&#039;&#039;&#039;Activation by the complex pheromone-PBP&#039;&#039;&#039;&lt;br /&gt;
An alternative mode of action was proposed for the receptor activation in &#039;&#039;Drosophila melanogaster&#039;&#039;, where it was found that the complex of pheromone-PBP is required for the activity of pheromone-sensitive neurons &amp;lt;ref&amp;gt;DOI: 10.1016/j.neuron.2004.12.031&amp;lt;ref/&amp;gt;&amp;lt;ref&amp;gt;doi: 10.1016/j.cell.2008.04.046&amp;lt;ref/&amp;gt; &lt;br /&gt;
&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== See also == &lt;br /&gt;
*[[Odorant_binding_protein_3D_structures]]&lt;br /&gt;
*[[Chemical communication in arthropods]]&lt;br /&gt;
*[[Pheromone binding protein]]&lt;br /&gt;
== References ==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Nurit Eliash</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Odorant_binding_protein&amp;diff=2368877</id>
		<title>Odorant binding protein</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Odorant_binding_protein&amp;diff=2368877"/>
		<updated>2015-01-28T14:07:03Z</updated>

		<summary type="html">&lt;p&gt;Nurit Eliash: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;[[Image:Bombyx mori.jpg|thumb|upright=2|&#039;&#039;Bombyx mori&#039;&#039;, the silk moth, picture by [https://www.flickr.com/photos/depredator007/2522038240/ Fernando Cuenca]]]&lt;br /&gt;
[[Image:Bombykol.png|thumb|upright=1|Bombykol, a sex pheromone of &#039;&#039;Bombyx mori&#039;&#039;, from [http://pubchem.ncbi.nlm.nih.gov/compound/Bombykol#section=Top PubChem]]]&lt;br /&gt;
==Introduction==&lt;br /&gt;
Odorant-binding protein (OBP) are soluble proteins which involve in the processes of odorant detection in the olfactory sensilla &amp;lt;ref name=&amp;quot;Pelosi 2014&amp;quot;&amp;gt;doi: 10.3389/fphys.2014.00320&amp;lt;/ref&amp;gt;. Though functionally same, vertebrates and insects OBP have different origin and structure.&lt;br /&gt;
OBPs are important for insect olfaction. For instance, OBP76a (LUSH) in the fly [http://en.wikipedia.org/wiki/Drosophila_melanogaster &#039;&#039;Drosophila melanogaster&#039;&#039;] is required for the detection of the pheromone vaccenyl acetate &amp;lt;ref name=&amp;quot;Xu 2005&amp;quot;&amp;gt;doi: 10.1016/j.neuron.2004.12.031&amp;lt;/ref&amp;gt; and has been proven to adopt a conformation that activates the odorant receptor &amp;lt;ref name=&amp;quot;Laughlin 2008&amp;quot;&amp;gt;doi: 10.1016/j.cell.2008.04.046&amp;lt;/ref&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
==OBP in insects==&lt;br /&gt;
==== OBP Function ====&lt;br /&gt;
Despite five decades of intensive research, the exact roles of OBP and the mechanism by which the odorant receptor (OR) is activated are still in dispute &amp;lt;ref name=&amp;quot;Leal&amp;quot;&amp;gt;DOI: 10.1146/annurev-ento-120811-153635&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI: 10.1007/s00359-009-0461-4&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;A few functions have been suggested for OBP:&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
1. Solubelizing the odorant molecule and its transportation in the sensillar lymph.&lt;br /&gt;
&lt;br /&gt;
2. Protecting the odorant molecule from the odorant degrading enzymes, in the sensillar lymph.&lt;br /&gt;
&lt;br /&gt;
3. Activating of the odorant receptor on the dendrite membrane, by the odorant-OBP complex.&lt;br /&gt;
&lt;br /&gt;
4. Mediating the deactivation of the odorant molecule after the activation of the receptor.&lt;br /&gt;
&lt;br /&gt;
5. An organic anion (the protein has 9 negative charges).&lt;br /&gt;
&lt;br /&gt;
Of all, the first role of OBP as an odorant solubilizer and carrier is generally accepted.&lt;br /&gt;
&lt;br /&gt;
In order to explain the structure and function of these fascinating proteins, this page will further focus on a particular OBP - the well investigated &#039;&#039;[http://en.wikipedia.org/wiki/Bombyx_mori Bombyx mori]&#039;&#039; pheromone binding protein: [http://www.uniprot.org/uniprot/P34174 BmorPBP].&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
====&#039;&#039;Bombyx mori&#039;&#039; BmorPBP (lets talk about sex..)====&lt;br /&gt;
&amp;lt;StructureSection load=&#039;1ls8&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;&#039;&#039;Bombyx mori&#039;&#039; PBP -BmorPBP scene=&#039;&#039;&amp;gt;&lt;br /&gt;
Pheromone binding proteins (PBPs) are specialized members of the insect odorant-binding protein (OBP) super-family.   &lt;br /&gt;
The main purpose in the adult moth&#039;s short life is reproduction. In fact, the male and female moth invest all of their energy and resources hoping to reach to the ultimate goal-  mating. This long journey begins when the female moth releases a sex pheromone, usually in specific hours in the night &amp;lt;ref&amp;gt;doi: 10.1007/BF01946910&amp;lt;/ref&amp;gt;. &lt;br /&gt;
BmorPBP was first identified in the &#039;&#039;B. mori&#039;&#039; male antennae by Krieger et al. in 1996 &amp;lt;ref&amp;gt;doi: 10.1016/0965-1748(95)00096-8&amp;lt;/ref&amp;gt;, as the PBP of the first sex pheromone discovered ((E,Z)-10,12-hexadecadienol, or [http://en.wikipedia.org/wiki/Bombykol Bombykol]). The male moth needs to detect minute amount of the pheromone in the air, while following turbulent wind-born pheromone trail and response fast (experimental evidence shows a response time of 0.5 seconds&amp;lt;ref&amp;gt;doi: 10.1038/293161a0&amp;lt;/ref&amp;gt;). &lt;br /&gt;
&lt;br /&gt;
====BmorPBP structure and function====&lt;br /&gt;
The protein has 164 amino acids that forms 6-7 alpha helices (depends on the protein conformation). Three &amp;lt;font color=#FFEF00&amp;gt;&amp;lt;b&amp;gt;disulfide bonds&amp;lt;/b&amp;gt;&amp;lt;/font&amp;gt; formed by &amp;lt;scene name=&#039;68/683383/Cysteins6/1&#039;&amp;gt;6 cystein &amp;lt;/scene&amp;gt; residues tied four helices, and form the compact and robust structure of the protein. As expected from a soluble protein, its surface is covered with &amp;lt;scene name=&#039;68/683383/Charged_resid/1&#039;&amp;gt;charged residues&amp;lt;/scene&amp;gt;, which allows it to make interactions with the water molecule and solubilize in the sensillar lymph.&lt;br /&gt;
&lt;br /&gt;
====BmorPBP - ligand binding====&lt;br /&gt;
The protein natural ligand is the moth pheromone &amp;lt;scene name=&#039;68/683383/Bombykol_ligand_in_2p71/1&#039;&amp;gt;Bombykol&amp;lt;/scene&amp;gt;. However, it was demonstrated that other molecules can also bound to the protein cavity &amp;lt;ref&amp;gt;doi: 10.1016/j.str.2007.07.013&amp;lt;/ref&amp;gt;. The interaction with the ligand is being made by 4 alpha helices 1, 4, 5 and 6 in the core of the protein, which form the binding cavity &amp;lt;ref&amp;gt;doi: 10.1016/S1074-5521(00)00078-8&amp;lt;/ref&amp;gt;.    &lt;br /&gt;
Inside the binding cavity, &amp;lt;scene name=&#039;68/683383/Residues_interacting/1&#039;&amp;gt;non-charged residues&amp;lt;/scene&amp;gt; are interacting with the pheromone, mainly by van der waals bounds. Out of those residues, some are conserved across OBP of lepidopteran (&amp;lt;font color=#8DB600&amp;gt;&amp;lt;b&amp;gt;in green&amp;lt;/b&amp;gt;&amp;lt;/font&amp;gt;), and the rest are conserved in lepidopteran PBP only (&amp;lt;font color=#318CE7&amp;gt;&amp;lt;b&amp;gt;in light blue&amp;lt;/b&amp;gt;&amp;lt;/font&amp;gt;).   &lt;br /&gt;
In addition, the hydroxyl group of the pheromone bombykol forms a &amp;lt;scene name=&#039;68/683383/Ser56_interaction_with_oxg/2&#039;&amp;gt;hydrogen bond with the sidechain of Ser56&amp;lt;/scene&amp;gt;, Ser56 in red, oxygens are in purple (O–O distance of 2.8 Å).  &lt;br /&gt;
&lt;br /&gt;
====Protein conformations====&lt;br /&gt;
[[Image:A -B forms without ligand.png|thumb|upright=2|The A and B forms without ligand (PDB IDs: [[1gm0]] and [[1ls8]]).]]&lt;br /&gt;
[[Image:A to b with ligand.png|thumb|upright=2|The A and B forms with ligand (PDB IDs: [[1gm0]] and [[1ls8]]).]]&lt;br /&gt;
&lt;br /&gt;
BmorPBP has two conformations: The &#039;&#039;&#039;&amp;quot;closed form&amp;quot; (A)&#039;&#039;&#039; and the &#039;&#039;&amp;quot;open form&amp;quot; (B)&#039;&#039;&amp;lt;ref&amp;gt;DOI: 10.1074/jbc.274.43.30950&amp;lt;/ref&amp;gt;. The bombykol and the alpha-helix located in the c-terminus of the protein compete for the binding site: when the c-terminus is inside the binding cavity it get&#039;s an alpha helix shape, and the protein is in its &amp;quot;close form&amp;quot; (B), whereas in the &amp;quot;open form&amp;quot; (A) the c-terminus is outside of the protein and has no defined secondary structure. Binding experiments have shown that the B-form binds 15 times higher than the A-form &amp;lt;ref&amp;gt;doi: 10.1073/pnas.0501447102&amp;lt;/ref&amp;gt;, therefore considered to be the carrier of the pheromone. The complex of the A-form and the pheromone, is then considered the form that activates the receptor.         &lt;br /&gt;
&lt;br /&gt;
The &amp;lt;scene name=&#039;68/683383/1dqe-1gm0/4&#039;&amp;gt;transition between the two conformation&amp;lt;/scene&amp;gt; is both pH and ligand dependent &amp;lt;ref&amp;gt;doi: 10.1073?pnas.251532998&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI: 10.1016/j.bbrc.2005.07.176&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;doi: 10.1073/pnas.1317706110&amp;lt;/ref&amp;gt;. In short, the B-form (c-terminus outside the cavity) occurs only at neutral pH and in the presence of the ligand. The A-form (c-terminus inside the cavity) occurs at both low and neutral pH, yet at the latter only in the absence of ligand. Therefore, in neutral pH when the ligand is binding to the protein in its A-form, the complex formation causes a change in conformation to the B-form. However, both A and B forms are equally distributed in the lymph.&lt;br /&gt;
{{Button Toggle AnimationOnPause}}&lt;br /&gt;
   &lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Conformation transition mechanism:&#039;&#039;&#039;&lt;br /&gt;
The c-terminus of the protein bears mostly &amp;lt;scene name=&#039;68/683383/Hydrophobic_resid/1&#039;&amp;gt;non-polar amino acids&amp;lt;/scene&amp;gt;. Yet on the surface of the helix there are three exceptional amino acids: Asp-132, Glu-137, and Glu-141, which are conserved in moth PBP &amp;lt;ref&amp;gt;doi: 10.1016/j.bbrc.2005.07.176&amp;lt;/ref&amp;gt;. Of these, residues &amp;lt;scene name=&#039;68/683383/Asp132/1&#039;&amp;gt;Asp-132&amp;lt;/scene&amp;gt; (and Glu-141, if present) triggers the formation of the alpha-helix upon protonation at low pH. This causes the transition from the &amp;lt;scene name=&#039;68/683383/B_form_with_ligand/1&#039;&amp;gt;&amp;quot;A form&amp;quot;&amp;lt;/scene&amp;gt;, to the &amp;lt;scene name=&#039;68/683383/A_form_with_ligand/1&#039;&amp;gt;&amp;quot;B form&amp;quot;&amp;lt;/scene&amp;gt; and the ejaculation of the ligand from the binding pocket, which is replaced by the formatted alpha helix&amp;lt;ref&amp;gt;doi: 10.1016/j.bbrc&amp;lt;/ref&amp;gt;. &lt;br /&gt;
Studies on other Lepidopterans that show a similar pH dependent conformation suggests that this model is a general model moth PBP&amp;lt;ref name=&amp;quot;Leal&amp;quot; /&amp;gt;. Nonetheless, the enormous diversity among insects is not allowing us to assume this model is true for all insects&#039; OBPs.&lt;br /&gt;
[[Image:N model extended.png|thumb|upright=2.5|Figure 1. The events prior the neuron excitation, following the &amp;quot;N model&amp;quot; suggested by Kaissling (2009)&amp;lt;ref name=&amp;quot;kaissling&amp;quot;&amp;gt;DOI: 10.1007/s00359-009-0461-4&amp;lt;/ref&amp;gt; The pheromone enters the sensillar lymph through a pore in cuticle. The pheromone can then be degraded by the ODE (1) -or- bind to the A and B protein forms (2a and 2b, respectively).  When the complex arrives at the low pH near the membrane, the transition is in favor of the A-form, (3) in which the -c-terminus is forming an alpha helix inside the binding cavity, pushing out the pheromone. The activation of the complex of odorant receptor and coreceptor (OR:OR-CO), is induced by ether the complex of pheromone-PBP, or by the pheromone alone (5, two options). The B-form can also act as a scavenger, as it mediates the deactivation of the pheromone (6) and releases it to the ODE (6)]] &lt;br /&gt;
====Receptor activation====&lt;br /&gt;
Two theories have been proposed for the activation of the odorant receptors located on the dendrtirte membrane. One theory suggests that the pheromone-PBP complex is needed for the receptor activation, while the second theory argue that the pheromone itself is sufficient for the activation of the receptor.   &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;Activation by the pheromone alone&#039;&#039;&#039; &lt;br /&gt;
This model is supported by the pH dependent conformation transition, that is described above. The bulk of the sensillar lymph is in neutral pH (6.5-7), while environment near the dendrite membrane bears a low pH (4.5), due to the negative charges on the surface of the membrane &amp;lt;ref&amp;gt;DOI: 10.1016/0040-8166(84)90004-1&amp;lt;/ref&amp;gt;, which cause the accumulation of positively charged kations near the membrane surface (20-50 nm)&amp;lt;ref name=&amp;quot;kaissling&amp;quot; /&amp;gt;&amp;lt;ref&amp;gt;. According to this model, the pheromone is entering the sensillar lymph through a pore in the cuticle, then it can be either degraded by odorant degrading enzymes (ODE) or bind to a PBP (of both forms). Once the complex is arriving to the low pH environment near the dendrite membrane the PBP will shift to the A-form, thereby ejaculating the ligand from the binding pocket, allowing it to activate the OR:CO-OR complex and the cellular signal transduction begins.      &lt;br /&gt;
 &lt;br /&gt;
*&#039;&#039;&#039;Activation by the complex pheromone-PBP&#039;&#039;&#039;&lt;br /&gt;
An alternative mode of action was proposed for the receptor activation in &#039;&#039;Drosophila melanogaster&#039;&#039;, where it was found that the complex of pheromone-PBP is required for the activity of pheromone-sensitive neurons &amp;lt;ref&amp;gt;DOI: 10.1016/j.neuron.2004.12.031&amp;lt;ref/&amp;gt;&amp;lt;ref&amp;gt;doi: 10.1016/j.cell.2008.04.046&amp;lt;ref/&amp;gt; &lt;br /&gt;
&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== See also == &lt;br /&gt;
*[[Odorant_binding_protein_3D_structures]]&lt;br /&gt;
*[[Chemical communication in arthropods]]&lt;br /&gt;
*[[Pheromone binding protein]]&lt;br /&gt;
== References ==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Nurit Eliash</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Odorant_binding_protein&amp;diff=2368876</id>
		<title>Odorant binding protein</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Odorant_binding_protein&amp;diff=2368876"/>
		<updated>2015-01-28T14:06:09Z</updated>

		<summary type="html">&lt;p&gt;Nurit Eliash: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;==Introduction==&lt;br /&gt;
Odorant-binding protein (OBP) are soluble proteins which involve in the processes of odorant detection in the olfactory sensilla &amp;lt;ref name=&amp;quot;Pelosi 2014&amp;quot;&amp;gt;doi: 10.3389/fphys.2014.00320&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Though functionally same, vertebrates and insects OBP have different origin and structure.&lt;br /&gt;
OBPs are important for insect olfaction. For instance, OBP76a (LUSH) in the fly [http://en.wikipedia.org/wiki/Drosophila_melanogaster &#039;&#039;Drosophila melanogaster&#039;&#039;] is required for the detection of the pheromone vaccenyl acetate &amp;lt;ref name=&amp;quot;Xu 2005&amp;quot;&amp;gt;doi: 10.1016/j.neuron.2004.12.031&amp;lt;/ref&amp;gt; and has been proven to adopt a conformation that activates the odorant receptor &amp;lt;ref name=&amp;quot;Laughlin 2008&amp;quot;&amp;gt;doi: 10.1016/j.cell.2008.04.046&amp;lt;/ref&amp;gt;. &lt;br /&gt;
[[Image:Bombyx mori.jpg|thumb|upright=2|&#039;&#039;Bombyx mori&#039;&#039;, the silk moth, picture by [https://www.flickr.com/photos/depredator007/2522038240/ Fernando Cuenca]]]&lt;br /&gt;
[[Image:Bombykol.png|thumb|upright=1|Bombykol, a sex pheromone of &#039;&#039;Bombyx mori&#039;&#039;, from [http://pubchem.ncbi.nlm.nih.gov/compound/Bombykol#section=Top PubChem]]]&lt;br /&gt;
&lt;br /&gt;
==OBP in insects==&lt;br /&gt;
==== OBP Function ====&lt;br /&gt;
Despite five decades of intensive research, the exact roles of OBP and the mechanism by which the odorant receptor (OR) is activated are still in dispute &amp;lt;ref name=&amp;quot;Leal&amp;quot;&amp;gt;DOI: 10.1146/annurev-ento-120811-153635&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI: 10.1007/s00359-009-0461-4&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;A few functions have been suggested for OBP:&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
1. Solubelizing the odorant molecule and its transportation in the sensillar lymph.&lt;br /&gt;
&lt;br /&gt;
2. Protecting the odorant molecule from the odorant degrading enzymes, in the sensillar lymph.&lt;br /&gt;
&lt;br /&gt;
3. Activating of the odorant receptor on the dendrite membrane, by the odorant-OBP complex.&lt;br /&gt;
&lt;br /&gt;
4. Mediating the deactivation of the odorant molecule after the activation of the receptor.&lt;br /&gt;
&lt;br /&gt;
5. An organic anion (the protein has 9 negative charges).&lt;br /&gt;
&lt;br /&gt;
Of all, the first role of OBP as an odorant solubilizer and carrier is generally accepted.&lt;br /&gt;
&lt;br /&gt;
In order to explain the structure and function of these fascinating proteins, this page will further focus on a particular OBP - the well investigated &#039;&#039;[http://en.wikipedia.org/wiki/Bombyx_mori Bombyx mori]&#039;&#039; pheromone binding protein: [http://www.uniprot.org/uniprot/P34174 BmorPBP].&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
====&#039;&#039;Bombyx mori&#039;&#039; BmorPBP (lets talk about sex..)====&lt;br /&gt;
&amp;lt;StructureSection load=&#039;1ls8&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;&#039;&#039;Bombyx mori&#039;&#039; PBP -BmorPBP scene=&#039;&#039;&amp;gt;&lt;br /&gt;
Pheromone binding proteins (PBPs) are specialized members of the insect odorant-binding protein (OBP) super-family.   &lt;br /&gt;
The main purpose in the adult moth&#039;s short life is reproduction. In fact, the male and female moth invest all of their energy and resources hoping to reach to the ultimate goal-  mating. This long journey begins when the female moth releases a sex pheromone, usually in specific hours in the night &amp;lt;ref&amp;gt;doi: 10.1007/BF01946910&amp;lt;/ref&amp;gt;. &lt;br /&gt;
BmorPBP was first identified in the &#039;&#039;B. mori&#039;&#039; male antennae by Krieger et al. in 1996 &amp;lt;ref&amp;gt;doi: 10.1016/0965-1748(95)00096-8&amp;lt;/ref&amp;gt;, as the PBP of the first sex pheromone discovered ((E,Z)-10,12-hexadecadienol, or [http://en.wikipedia.org/wiki/Bombykol Bombykol]). The male moth needs to detect minute amount of the pheromone in the air, while following turbulent wind-born pheromone trail and response fast (experimental evidence shows a response time of 0.5 seconds&amp;lt;ref&amp;gt;doi: 10.1038/293161a0&amp;lt;/ref&amp;gt;). &lt;br /&gt;
&lt;br /&gt;
====BmorPBP structure and function====&lt;br /&gt;
The protein has 164 amino acids that forms 6-7 alpha helices (depends on the protein conformation). Three &amp;lt;font color=#FFEF00&amp;gt;&amp;lt;b&amp;gt;disulfide bonds&amp;lt;/b&amp;gt;&amp;lt;/font&amp;gt; formed by &amp;lt;scene name=&#039;68/683383/Cysteins6/1&#039;&amp;gt;6 cystein &amp;lt;/scene&amp;gt; residues tied four helices, and form the compact and robust structure of the protein. As expected from a soluble protein, its surface is covered with &amp;lt;scene name=&#039;68/683383/Charged_resid/1&#039;&amp;gt;charged residues&amp;lt;/scene&amp;gt;, which allows it to make interactions with the water molecule and solubilize in the sensillar lymph.&lt;br /&gt;
&lt;br /&gt;
====BmorPBP - ligand binding====&lt;br /&gt;
The protein natural ligand is the moth pheromone &amp;lt;scene name=&#039;68/683383/Bombykol_ligand_in_2p71/1&#039;&amp;gt;Bombykol&amp;lt;/scene&amp;gt;. However, it was demonstrated that other molecules can also bound to the protein cavity &amp;lt;ref&amp;gt;doi: 10.1016/j.str.2007.07.013&amp;lt;/ref&amp;gt;. The interaction with the ligand is being made by 4 alpha helices 1, 4, 5 and 6 in the core of the protein, which form the binding cavity &amp;lt;ref&amp;gt;doi: 10.1016/S1074-5521(00)00078-8&amp;lt;/ref&amp;gt;.    &lt;br /&gt;
Inside the binding cavity, &amp;lt;scene name=&#039;68/683383/Residues_interacting/1&#039;&amp;gt;non-charged residues&amp;lt;/scene&amp;gt; are interacting with the pheromone, mainly by van der waals bounds. Out of those residues, some are conserved across OBP of lepidopteran (&amp;lt;font color=#8DB600&amp;gt;&amp;lt;b&amp;gt;in green&amp;lt;/b&amp;gt;&amp;lt;/font&amp;gt;), and the rest are conserved in lepidopteran PBP only (&amp;lt;font color=#318CE7&amp;gt;&amp;lt;b&amp;gt;in light blue&amp;lt;/b&amp;gt;&amp;lt;/font&amp;gt;).   &lt;br /&gt;
In addition, the hydroxyl group of the pheromone bombykol forms a &amp;lt;scene name=&#039;68/683383/Ser56_interaction_with_oxg/2&#039;&amp;gt;hydrogen bond with the sidechain of Ser56&amp;lt;/scene&amp;gt;, Ser56 in red, oxygens are in purple (O–O distance of 2.8 Å).  &lt;br /&gt;
&lt;br /&gt;
====Protein conformations====&lt;br /&gt;
[[Image:A -B forms without ligand.png|thumb|upright=2|The A and B forms without ligand (PDB IDs: [[1gm0]] and [[1ls8]]).]]&lt;br /&gt;
[[Image:A to b with ligand.png|thumb|upright=2|The A and B forms with ligand (PDB IDs: [[1gm0]] and [[1ls8]]).]]&lt;br /&gt;
&lt;br /&gt;
BmorPBP has two conformations: The &#039;&#039;&#039;&amp;quot;closed form&amp;quot; (A)&#039;&#039;&#039; and the &#039;&#039;&amp;quot;open form&amp;quot; (B)&#039;&#039;&amp;lt;ref&amp;gt;DOI: 10.1074/jbc.274.43.30950&amp;lt;/ref&amp;gt;. The bombykol and the alpha-helix located in the c-terminus of the protein compete for the binding site: when the c-terminus is inside the binding cavity it get&#039;s an alpha helix shape, and the protein is in its &amp;quot;close form&amp;quot; (B), whereas in the &amp;quot;open form&amp;quot; (A) the c-terminus is outside of the protein and has no defined secondary structure. Binding experiments have shown that the B-form binds 15 times higher than the A-form &amp;lt;ref&amp;gt;doi: 10.1073/pnas.0501447102&amp;lt;/ref&amp;gt;, therefore considered to be the carrier of the pheromone. The complex of the A-form and the pheromone, is then considered the form that activates the receptor.         &lt;br /&gt;
&lt;br /&gt;
The &amp;lt;scene name=&#039;68/683383/1dqe-1gm0/4&#039;&amp;gt;transition between the two conformation&amp;lt;/scene&amp;gt; is both pH and ligand dependent &amp;lt;ref&amp;gt;doi: 10.1073?pnas.251532998&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI: 10.1016/j.bbrc.2005.07.176&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;doi: 10.1073/pnas.1317706110&amp;lt;/ref&amp;gt;. In short, the B-form (c-terminus outside the cavity) occurs only at neutral pH and in the presence of the ligand. The A-form (c-terminus inside the cavity) occurs at both low and neutral pH, yet at the latter only in the absence of ligand. Therefore, in neutral pH when the ligand is binding to the protein in its A-form, the complex formation causes a change in conformation to the B-form. However, both A and B forms are equally distributed in the lymph.&lt;br /&gt;
{{Button Toggle AnimationOnPause}}&lt;br /&gt;
   &lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Conformation transition mechanism:&#039;&#039;&#039;&lt;br /&gt;
The c-terminus of the protein bears mostly &amp;lt;scene name=&#039;68/683383/Hydrophobic_resid/1&#039;&amp;gt;non-polar amino acids&amp;lt;/scene&amp;gt;. Yet on the surface of the helix there are three exceptional amino acids: Asp-132, Glu-137, and Glu-141, which are conserved in moth PBP &amp;lt;ref&amp;gt;doi: 10.1016/j.bbrc.2005.07.176&amp;lt;/ref&amp;gt;. Of these, residues &amp;lt;scene name=&#039;68/683383/Asp132/1&#039;&amp;gt;Asp-132&amp;lt;/scene&amp;gt; (and Glu-141, if present) triggers the formation of the alpha-helix upon protonation at low pH. This causes the transition from the &amp;lt;scene name=&#039;68/683383/B_form_with_ligand/1&#039;&amp;gt;&amp;quot;A form&amp;quot;&amp;lt;/scene&amp;gt;, to the &amp;lt;scene name=&#039;68/683383/A_form_with_ligand/1&#039;&amp;gt;&amp;quot;B form&amp;quot;&amp;lt;/scene&amp;gt; and the ejaculation of the ligand from the binding pocket, which is replaced by the formatted alpha helix&amp;lt;ref&amp;gt;doi: 10.1016/j.bbrc&amp;lt;/ref&amp;gt;. &lt;br /&gt;
Studies on other Lepidopterans that show a similar pH dependent conformation suggests that this model is a general model moth PBP&amp;lt;ref name=&amp;quot;Leal&amp;quot; /&amp;gt;. Nonetheless, the enormous diversity among insects is not allowing us to assume this model is true for all insects&#039; OBPs.&lt;br /&gt;
[[Image:N model extended.png|thumb|upright=2.5|Figure 1. The events prior the neuron excitation, following the &amp;quot;N model&amp;quot; suggested by Kaissling (2009)&amp;lt;ref name=&amp;quot;kaissling&amp;quot;&amp;gt;DOI: 10.1007/s00359-009-0461-4&amp;lt;/ref&amp;gt; The pheromone enters the sensillar lymph through a pore in cuticle. The pheromone can then be degraded by the ODE (1) -or- bind to the A and B protein forms (2a and 2b, respectively).  When the complex arrives at the low pH near the membrane, the transition is in favor of the A-form, (3) in which the -c-terminus is forming an alpha helix inside the binding cavity, pushing out the pheromone. The activation of the complex of odorant receptor and coreceptor (OR:OR-CO), is induced by ether the complex of pheromone-PBP, or by the pheromone alone (5, two options). The B-form can also act as a scavenger, as it mediates the deactivation of the pheromone (6) and releases it to the ODE (6)]] &lt;br /&gt;
====Receptor activation====&lt;br /&gt;
Two theories have been proposed for the activation of the odorant receptors located on the dendrtirte membrane. One theory suggests that the pheromone-PBP complex is needed for the receptor activation, while the second theory argue that the pheromone itself is sufficient for the activation of the receptor.   &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;Activation by the pheromone alone&#039;&#039;&#039; &lt;br /&gt;
This model is supported by the pH dependent conformation transition, that is described above. The bulk of the sensillar lymph is in neutral pH (6.5-7), while environment near the dendrite membrane bears a low pH (4.5), due to the negative charges on the surface of the membrane &amp;lt;ref&amp;gt;DOI: 10.1016/0040-8166(84)90004-1&amp;lt;/ref&amp;gt;, which cause the accumulation of positively charged kations near the membrane surface (20-50 nm)&amp;lt;ref name=&amp;quot;kaissling&amp;quot; /&amp;gt;&amp;lt;ref&amp;gt;. According to this model, the pheromone is entering the sensillar lymph through a pore in the cuticle, then it can be either degraded by odorant degrading enzymes (ODE) or bind to a PBP (of both forms). Once the complex is arriving to the low pH environment near the dendrite membrane the PBP will shift to the A-form, thereby ejaculating the ligand from the binding pocket, allowing it to activate the OR:CO-OR complex and the cellular signal transduction begins.      &lt;br /&gt;
 &lt;br /&gt;
*&#039;&#039;&#039;Activation by the complex pheromone-PBP&#039;&#039;&#039;&lt;br /&gt;
An alternative mode of action was proposed for the receptor activation in &#039;&#039;Drosophila melanogaster&#039;&#039;, where it was found that the complex of pheromone-PBP is required for the activity of pheromone-sensitive neurons &amp;lt;ref&amp;gt;DOI: 10.1016/j.neuron.2004.12.031&amp;lt;ref/&amp;gt;&amp;lt;ref&amp;gt;doi: 10.1016/j.cell.2008.04.046&amp;lt;ref/&amp;gt; &lt;br /&gt;
&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== See also == &lt;br /&gt;
*[[Odorant_binding_protein_3D_structures]]&lt;br /&gt;
*[[Chemical communication in arthropods]]&lt;br /&gt;
*[[Pheromone binding protein]]&lt;br /&gt;
== References ==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Nurit Eliash</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Odorant_binding_protein&amp;diff=2368875</id>
		<title>Odorant binding protein</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Odorant_binding_protein&amp;diff=2368875"/>
		<updated>2015-01-28T14:05:44Z</updated>

		<summary type="html">&lt;p&gt;Nurit Eliash: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;==Introduction==&lt;br /&gt;
Odorant-binding protein (OBP) are soluble proteins which involve in the processes of odorant detection in the olfactory sensilla &amp;lt;ref name=&amp;quot;Pelosi 2014&amp;quot;&amp;gt;doi: 10.3389/fphys.2014.00320&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Though functionally same, vertebrates and insects OBP have different origin and structure.&lt;br /&gt;
OBPs are important for insect olfaction. For instance, OBP76a (LUSH) in the fly [http://en.wikipedia.org/wiki/Drosophila_melanogaster &#039;&#039;Drosophila melanogaster&#039;&#039;] is required for the detection of the pheromone vaccenyl acetate &amp;lt;ref name=&amp;quot;Xu 2005&amp;quot;&amp;gt;doi: 10.1016/j.neuron.2004.12.031&amp;lt;/ref&amp;gt; and has been proven to adopt a conformation that activates the odorant receptor &amp;lt;ref name=&amp;quot;Laughlin 2008&amp;quot;&amp;gt;doi: 10.1016/j.cell.2008.04.046&amp;lt;/ref&amp;gt;. &lt;br /&gt;
[[Image:Bombyx mori.jpg|thumb|upright=1|&#039;&#039;Bombyx mori&#039;&#039;, the silk moth, picture by [https://www.flickr.com/photos/depredator007/2522038240/ Fernando Cuenca]]]&lt;br /&gt;
[[Image:Bombykol.png|thumb|upright=1|Bombykol, a sex pheromone of &#039;&#039;Bombyx mori&#039;&#039;, from [http://pubchem.ncbi.nlm.nih.gov/compound/Bombykol#section=Top PubChem]]]&lt;br /&gt;
&lt;br /&gt;
==OBP in insects==&lt;br /&gt;
==== OBP Function ====&lt;br /&gt;
Despite five decades of intensive research, the exact roles of OBP and the mechanism by which the odorant receptor (OR) is activated are still in dispute &amp;lt;ref name=&amp;quot;Leal&amp;quot;&amp;gt;DOI: 10.1146/annurev-ento-120811-153635&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI: 10.1007/s00359-009-0461-4&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;A few functions have been suggested for OBP:&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
1. Solubelizing the odorant molecule and its transportation in the sensillar lymph.&lt;br /&gt;
&lt;br /&gt;
2. Protecting the odorant molecule from the odorant degrading enzymes, in the sensillar lymph.&lt;br /&gt;
&lt;br /&gt;
3. Activating of the odorant receptor on the dendrite membrane, by the odorant-OBP complex.&lt;br /&gt;
&lt;br /&gt;
4. Mediating the deactivation of the odorant molecule after the activation of the receptor.&lt;br /&gt;
&lt;br /&gt;
5. An organic anion (the protein has 9 negative charges).&lt;br /&gt;
&lt;br /&gt;
Of all, the first role of OBP as an odorant solubilizer and carrier is generally accepted.&lt;br /&gt;
&lt;br /&gt;
In order to explain the structure and function of these fascinating proteins, this page will further focus on a particular OBP - the well investigated &#039;&#039;[http://en.wikipedia.org/wiki/Bombyx_mori Bombyx mori]&#039;&#039; pheromone binding protein: [http://www.uniprot.org/uniprot/P34174 BmorPBP].&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
====&#039;&#039;Bombyx mori&#039;&#039; BmorPBP (lets talk about sex..)====&lt;br /&gt;
&amp;lt;StructureSection load=&#039;1ls8&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;&#039;&#039;Bombyx mori&#039;&#039; PBP -BmorPBP scene=&#039;&#039;&amp;gt;&lt;br /&gt;
Pheromone binding proteins (PBPs) are specialized members of the insect odorant-binding protein (OBP) super-family.   &lt;br /&gt;
The main purpose in the adult moth&#039;s short life is reproduction. In fact, the male and female moth invest all of their energy and resources hoping to reach to the ultimate goal-  mating. This long journey begins when the female moth releases a sex pheromone, usually in specific hours in the night &amp;lt;ref&amp;gt;doi: 10.1007/BF01946910&amp;lt;/ref&amp;gt;. &lt;br /&gt;
BmorPBP was first identified in the &#039;&#039;B. mori&#039;&#039; male antennae by Krieger et al. in 1996 &amp;lt;ref&amp;gt;doi: 10.1016/0965-1748(95)00096-8&amp;lt;/ref&amp;gt;, as the PBP of the first sex pheromone discovered ((E,Z)-10,12-hexadecadienol, or [http://en.wikipedia.org/wiki/Bombykol Bombykol]). The male moth needs to detect minute amount of the pheromone in the air, while following turbulent wind-born pheromone trail and response fast (experimental evidence shows a response time of 0.5 seconds&amp;lt;ref&amp;gt;doi: 10.1038/293161a0&amp;lt;/ref&amp;gt;). &lt;br /&gt;
&lt;br /&gt;
====BmorPBP structure and function====&lt;br /&gt;
The protein has 164 amino acids that forms 6-7 alpha helices (depends on the protein conformation). Three &amp;lt;font color=#FFEF00&amp;gt;&amp;lt;b&amp;gt;disulfide bonds&amp;lt;/b&amp;gt;&amp;lt;/font&amp;gt; formed by &amp;lt;scene name=&#039;68/683383/Cysteins6/1&#039;&amp;gt;6 cystein &amp;lt;/scene&amp;gt; residues tied four helices, and form the compact and robust structure of the protein. As expected from a soluble protein, its surface is covered with &amp;lt;scene name=&#039;68/683383/Charged_resid/1&#039;&amp;gt;charged residues&amp;lt;/scene&amp;gt;, which allows it to make interactions with the water molecule and solubilize in the sensillar lymph.&lt;br /&gt;
&lt;br /&gt;
====BmorPBP - ligand binding====&lt;br /&gt;
The protein natural ligand is the moth pheromone &amp;lt;scene name=&#039;68/683383/Bombykol_ligand_in_2p71/1&#039;&amp;gt;Bombykol&amp;lt;/scene&amp;gt;. However, it was demonstrated that other molecules can also bound to the protein cavity &amp;lt;ref&amp;gt;doi: 10.1016/j.str.2007.07.013&amp;lt;/ref&amp;gt;. The interaction with the ligand is being made by 4 alpha helices 1, 4, 5 and 6 in the core of the protein, which form the binding cavity &amp;lt;ref&amp;gt;doi: 10.1016/S1074-5521(00)00078-8&amp;lt;/ref&amp;gt;.    &lt;br /&gt;
Inside the binding cavity, &amp;lt;scene name=&#039;68/683383/Residues_interacting/1&#039;&amp;gt;non-charged residues&amp;lt;/scene&amp;gt; are interacting with the pheromone, mainly by van der waals bounds. Out of those residues, some are conserved across OBP of lepidopteran (&amp;lt;font color=#8DB600&amp;gt;&amp;lt;b&amp;gt;in green&amp;lt;/b&amp;gt;&amp;lt;/font&amp;gt;), and the rest are conserved in lepidopteran PBP only (&amp;lt;font color=#318CE7&amp;gt;&amp;lt;b&amp;gt;in light blue&amp;lt;/b&amp;gt;&amp;lt;/font&amp;gt;).   &lt;br /&gt;
In addition, the hydroxyl group of the pheromone bombykol forms a &amp;lt;scene name=&#039;68/683383/Ser56_interaction_with_oxg/2&#039;&amp;gt;hydrogen bond with the sidechain of Ser56&amp;lt;/scene&amp;gt;, Ser56 in red, oxygens are in purple (O–O distance of 2.8 Å).  &lt;br /&gt;
&lt;br /&gt;
====Protein conformations====&lt;br /&gt;
[[Image:A -B forms without ligand.png|thumb|upright=2|The A and B forms without ligand (PDB IDs: [[1gm0]] and [[1ls8]]).]]&lt;br /&gt;
[[Image:A to b with ligand.png|thumb|upright=2|The A and B forms with ligand (PDB IDs: [[1gm0]] and [[1ls8]]).]]&lt;br /&gt;
&lt;br /&gt;
BmorPBP has two conformations: The &#039;&#039;&#039;&amp;quot;closed form&amp;quot; (A)&#039;&#039;&#039; and the &#039;&#039;&amp;quot;open form&amp;quot; (B)&#039;&#039;&amp;lt;ref&amp;gt;DOI: 10.1074/jbc.274.43.30950&amp;lt;/ref&amp;gt;. The bombykol and the alpha-helix located in the c-terminus of the protein compete for the binding site: when the c-terminus is inside the binding cavity it get&#039;s an alpha helix shape, and the protein is in its &amp;quot;close form&amp;quot; (B), whereas in the &amp;quot;open form&amp;quot; (A) the c-terminus is outside of the protein and has no defined secondary structure. Binding experiments have shown that the B-form binds 15 times higher than the A-form &amp;lt;ref&amp;gt;doi: 10.1073/pnas.0501447102&amp;lt;/ref&amp;gt;, therefore considered to be the carrier of the pheromone. The complex of the A-form and the pheromone, is then considered the form that activates the receptor.         &lt;br /&gt;
&lt;br /&gt;
The &amp;lt;scene name=&#039;68/683383/1dqe-1gm0/4&#039;&amp;gt;transition between the two conformation&amp;lt;/scene&amp;gt; is both pH and ligand dependent &amp;lt;ref&amp;gt;doi: 10.1073?pnas.251532998&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI: 10.1016/j.bbrc.2005.07.176&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;doi: 10.1073/pnas.1317706110&amp;lt;/ref&amp;gt;. In short, the B-form (c-terminus outside the cavity) occurs only at neutral pH and in the presence of the ligand. The A-form (c-terminus inside the cavity) occurs at both low and neutral pH, yet at the latter only in the absence of ligand. Therefore, in neutral pH when the ligand is binding to the protein in its A-form, the complex formation causes a change in conformation to the B-form. However, both A and B forms are equally distributed in the lymph.&lt;br /&gt;
{{Button Toggle AnimationOnPause}}&lt;br /&gt;
   &lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Conformation transition mechanism:&#039;&#039;&#039;&lt;br /&gt;
The c-terminus of the protein bears mostly &amp;lt;scene name=&#039;68/683383/Hydrophobic_resid/1&#039;&amp;gt;non-polar amino acids&amp;lt;/scene&amp;gt;. Yet on the surface of the helix there are three exceptional amino acids: Asp-132, Glu-137, and Glu-141, which are conserved in moth PBP &amp;lt;ref&amp;gt;doi: 10.1016/j.bbrc.2005.07.176&amp;lt;/ref&amp;gt;. Of these, residues &amp;lt;scene name=&#039;68/683383/Asp132/1&#039;&amp;gt;Asp-132&amp;lt;/scene&amp;gt; (and Glu-141, if present) triggers the formation of the alpha-helix upon protonation at low pH. This causes the transition from the &amp;lt;scene name=&#039;68/683383/B_form_with_ligand/1&#039;&amp;gt;&amp;quot;A form&amp;quot;&amp;lt;/scene&amp;gt;, to the &amp;lt;scene name=&#039;68/683383/A_form_with_ligand/1&#039;&amp;gt;&amp;quot;B form&amp;quot;&amp;lt;/scene&amp;gt; and the ejaculation of the ligand from the binding pocket, which is replaced by the formatted alpha helix&amp;lt;ref&amp;gt;doi: 10.1016/j.bbrc&amp;lt;/ref&amp;gt;. &lt;br /&gt;
Studies on other Lepidopterans that show a similar pH dependent conformation suggests that this model is a general model moth PBP&amp;lt;ref name=&amp;quot;Leal&amp;quot; /&amp;gt;. Nonetheless, the enormous diversity among insects is not allowing us to assume this model is true for all insects&#039; OBPs.&lt;br /&gt;
[[Image:N model extended.png|thumb|upright=2.5|Figure 1. The events prior the neuron excitation, following the &amp;quot;N model&amp;quot; suggested by Kaissling (2009)&amp;lt;ref name=&amp;quot;kaissling&amp;quot;&amp;gt;DOI: 10.1007/s00359-009-0461-4&amp;lt;/ref&amp;gt; The pheromone enters the sensillar lymph through a pore in cuticle. The pheromone can then be degraded by the ODE (1) -or- bind to the A and B protein forms (2a and 2b, respectively).  When the complex arrives at the low pH near the membrane, the transition is in favor of the A-form, (3) in which the -c-terminus is forming an alpha helix inside the binding cavity, pushing out the pheromone. The activation of the complex of odorant receptor and coreceptor (OR:OR-CO), is induced by ether the complex of pheromone-PBP, or by the pheromone alone (5, two options). The B-form can also act as a scavenger, as it mediates the deactivation of the pheromone (6) and releases it to the ODE (6)]] &lt;br /&gt;
====Receptor activation====&lt;br /&gt;
Two theories have been proposed for the activation of the odorant receptors located on the dendrtirte membrane. One theory suggests that the pheromone-PBP complex is needed for the receptor activation, while the second theory argue that the pheromone itself is sufficient for the activation of the receptor.   &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;Activation by the pheromone alone&#039;&#039;&#039; &lt;br /&gt;
This model is supported by the pH dependent conformation transition, that is described above. The bulk of the sensillar lymph is in neutral pH (6.5-7), while environment near the dendrite membrane bears a low pH (4.5), due to the negative charges on the surface of the membrane &amp;lt;ref&amp;gt;DOI: 10.1016/0040-8166(84)90004-1&amp;lt;/ref&amp;gt;, which cause the accumulation of positively charged kations near the membrane surface (20-50 nm)&amp;lt;ref name=&amp;quot;kaissling&amp;quot; /&amp;gt;&amp;lt;ref&amp;gt;. According to this model, the pheromone is entering the sensillar lymph through a pore in the cuticle, then it can be either degraded by odorant degrading enzymes (ODE) or bind to a PBP (of both forms). Once the complex is arriving to the low pH environment near the dendrite membrane the PBP will shift to the A-form, thereby ejaculating the ligand from the binding pocket, allowing it to activate the OR:CO-OR complex and the cellular signal transduction begins.      &lt;br /&gt;
 &lt;br /&gt;
*&#039;&#039;&#039;Activation by the complex pheromone-PBP&#039;&#039;&#039;&lt;br /&gt;
An alternative mode of action was proposed for the receptor activation in &#039;&#039;Drosophila melanogaster&#039;&#039;, where it was found that the complex of pheromone-PBP is required for the activity of pheromone-sensitive neurons &amp;lt;ref&amp;gt;DOI: 10.1016/j.neuron.2004.12.031&amp;lt;ref/&amp;gt;&amp;lt;ref&amp;gt;doi: 10.1016/j.cell.2008.04.046&amp;lt;ref/&amp;gt; &lt;br /&gt;
&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== See also == &lt;br /&gt;
*[[Odorant_binding_protein_3D_structures]]&lt;br /&gt;
*[[Chemical communication in arthropods]]&lt;br /&gt;
*[[Pheromone binding protein]]&lt;br /&gt;
== References ==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Nurit Eliash</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Chemical_communication_in_arthropods&amp;diff=2368867</id>
		<title>Chemical communication in arthropods</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Chemical_communication_in_arthropods&amp;diff=2368867"/>
		<updated>2015-01-28T14:00:27Z</updated>

		<summary type="html">&lt;p&gt;Nurit Eliash: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;[[Image:Sensilla.png|thumb|upright=1.5|Figure 1: Vertebrate (a), and insect (b) sensilla. Figure 1 from Kaupp (2010), used with permission of Prof. U. Benjamin Kaupp.]] &lt;br /&gt;
[[Image:Signal trunsdution - Sanchez 2009.jpg|thumb|right|upright=2|Figure 2.(a) Schematic representation of the general structure of an insect olfactory hair; (b) The first molecular steps of the insect chemosensory signaling transduction pathway. Figure 1 from Sánchez-Gracia et al.(2009)&amp;lt;ref&amp;gt;doi: 10.1038/hdy.2009.55&amp;lt;/ref&amp;gt;, used with permission of Prof. Sa´nchez-Gracia.]]&lt;br /&gt;
 [[Image:Vieira and Rozas 2011 fig7.JPG|thumb|upright=1.5|Figure 3. The evolution of the Chemosensory System. Blue boxes represent the aquatic lifestyle. Right: Presence or absence of the chemosensory gene families in extant species. Branch lengths are not to scale. Figure 7 from Vieira and Rozas (2011), used with permission of Prof Julio Rozas &amp;lt;ref name=&amp;quot;Vieira and Rozas&amp;quot;&amp;gt;DOI: 10.1093/gbe/evr033&amp;lt;/ref&amp;gt;]] &lt;br /&gt;
&lt;br /&gt;
==The molecular basis of chemical communication==&lt;br /&gt;
The sense of smell, [http://en.wikipedia.org/wiki/Olfaction Olfaction] is a primary sense in nature. It plays a significant role in behaviors which are crucial for the organism survival: food searching, host and mating selection, and avoiding predators and pathogens &amp;lt;ref name=&amp;quot;kaupp&amp;quot;&amp;gt;DOI: 10.1038/nrn2789&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
In both [http://en.wikipedia.org/wiki/Arthropod arthropods] and [http://en.wikipedia.org/wiki/Vertebrate vertebrates] the detection of volatiles is completed by a complicated process which is mediated by soluble as well as transmembrane proteins &amp;lt;ref name=&amp;quot;pelosi&amp;quot;&amp;gt;DOI: 10.3389/fphys.2014.00320&amp;lt;/ref&amp;gt;.&lt;br /&gt;
It should be mentioned that the detection of [http://en.wikipedia.org/wiki/Pheromone pheromones] is also vital to microorganisms, as it regulates gene expression in what is termed [http://en.wikipedia.org/wiki/Quorum_sensing “quorum sensing”].  &lt;br /&gt;
In arthropods, most of what is known on chemosensory communication is based on insects&#039; research. The process begins when a volatile (mostly a small [http://en.wikipedia.org/wiki/Hydrophobe hydrophobic] molecule) enters the chemosensilla lymph of an insect, or the mucus of a vertebrate in the nasal cavity ([[fig 1]]). Both mediums are abundant in soluble proteins which binds to the hydrophobic molecules, solubilizes and carries it to the [http://en.wikipedia.org/wiki/Chemoreceptor chemoreceptors] on the dendritic membrane of the olfactory receptor neuron &amp;lt;ref name=&amp;quot;kaupp&amp;quot; /&amp;gt;&amp;lt;ref name=&amp;quot;vogt&amp;quot;&amp;gt;Vogt RG (2005) Molecular basis of pheromone detection in insects. Comprehensive Insect Physiology, Biochemistry, Pharmacology and Molecular Biology, eds Gilbert LI, Iatro K, Gills S (Elsevier, London), Vol 3, pp 753–804.&amp;lt;/ref&amp;gt;.The chemical signal is there by translated into an electrical signal which can cause an immediate response, or further elaborate with other signals in the insect&#039;s mushroom bodies or vertebrate&#039;s brain ([[fig 2]])&amp;lt;ref&amp;gt;doi: 10.3389/fncel.2012.00048&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;doi: 10.1146/annurev-ento-120811-153635&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== What is the differences and similarities between Arthropods and Vertebrates? ==&lt;br /&gt;
 &lt;br /&gt;
Though functionally similar, receptors as well as soluble proteins are structurally and genetically unrelated in insects and vertebrates (see [[fig 3]] for the putative evolution of proteins involved in chemosensory system).   &lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;Receptors&#039;&#039;&#039; &lt;br /&gt;
Most of the vertebrates&#039; chemosensory receptors are metabotropic and belong to the [[G protein-coupled receptors]]. Once the volatile binds to the receptor it initiates intracellular signal transduction &amp;lt;ref&amp;gt;doi: 10.1016/S0167-4838(00)00167-9&amp;lt;/ref&amp;gt;. On the other hand, arthropods&#039; and insects&#039; chemoreceptors are composed of two subunits: [http://en.wikipedia.org/wiki/Olfactory_receptor Receptor] and [http://en.wikipedia.org/wiki/Co-receptor Co-receptor] that upon interaction with the volatile or the complex of volatile-soluble protein, are activated and serve as an [http://en.wikipedia.org/wiki/Ion_channel ion channel]. The opening of the ion channel changes the [http://en.wikipedia.org/wiki/Membrane_potential membrane potential], and starts the inter-cellular signal transduction&amp;lt;ref name=&amp;quot;vogt&amp;quot; /&amp;gt;.[[Image:Chemoreceptors-insects.jpg|thumb|center|upright=2.5|Figure 4: Types of insect receptors. Figure 1 from Kaupp (2010), used with permission of Prof. U. Benjamin Kaupp.]]    &lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;Soluble proteins&#039;&#039;&#039;&lt;br /&gt;
These proteins which are concentrated in the sensillar lymph, solubilize and carry the volatile molecules to the receptor. &lt;br /&gt;
There are two main known types of soluble proteins that are involved in arthropods&#039; chemical communication: &#039;&#039;&#039;[http://proteopedia.org/w/Odorant_binding_protein Odorant binding proteins –OBPs]&#039;&#039;&#039;,&#039;&#039;&#039;[http://proteopedia.org/wiki/index.php/Chemosensory_protein Chemosensory protein-CSP]&#039;&#039;&#039; ([[fig 5]]). Though bearing the same name and participating in the same function, OBP of vertebrates and arthropods are two distinct families with completely different structure and origin&amp;lt;ref name=&amp;quot;pelosi&amp;quot; /&amp;gt;. Arthropods&#039; OBP are composed of alpha helices, while vertebrates&#039; OBP belong to the [http://en.wikipedia.org/wiki/Lipocalin Lipocalins] super family and have a beta-barrel structure (for structure comparison, see [[table 1]] and [[fig 5]]). Recently, another family of protein has been suggested to play a role in ant chemical communication, &#039;&#039;&#039;[https://www.wikigenes.org/e/gene/e/10577.html Niemann-Pick type C2 protein-NPC2]&#039;&#039;&#039; &amp;lt;ref name=&amp;quot;ishida&amp;quot;&amp;gt;DOI: 10.1073/pnas.1323928111&amp;lt;/ref&amp;gt;. &lt;br /&gt;
[[Image:Fig 3 soluble proteins.png|thumb|center|upright=3|Figure 5. (a) An example for vertebrate&#039;s OBP-a pig OBP, PDB:[[1e06]]; (b) An example for insect&#039;s OBP- &#039;&#039;Bombyx mori&#039;&#039; PBP, PDB:[[1dqe]]; (c) An example for insect&#039;s CSP-&#039;&#039;Mamestra brassicae&#039;&#039; CSP2 PDB:[[1n8u]]]]&lt;br /&gt;
[[Image:Soluble proteins table.png|thumb|center|upright=2|Table 1. Summation of the main structure properties of soluble proteins types]]&lt;br /&gt;
&lt;br /&gt;
==Types of Soluble proteins in arthropods== &lt;br /&gt;
&amp;lt;StructureSection load=&#039;1OOH&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;&#039;&#039;Mamestra brassicae&#039;&#039; CSP2 PDB:[[1n8u]]&#039; scene=&#039;&#039;&amp;gt;&lt;br /&gt;
In each protein the consereved &amp;lt;font color=#FF7E00&amp;gt;&amp;lt;b&amp;gt;&#039;&#039;&#039;cysteins&#039;&#039;&#039;&amp;lt;/b&amp;gt;&amp;lt;/font&amp;gt;and the &amp;lt;font color=#FDEE00&amp;gt;&amp;lt;b&amp;gt;&#039;&#039;&#039;disulfide bonds&#039;&#039;&#039;&amp;lt;/b&amp;gt;&amp;lt;/font&amp;gt; are color marked.&lt;br /&gt;
*&#039;&#039;&#039;OBP&#039;&#039;&#039;&lt;br /&gt;
This family was the first soluble protein discovered in the chemosensory system of arthropods. Its general strcuture is of alpha helices that are compactly tied by 3 disulfid bridges formed by 6 consereved cystein residues. &lt;br /&gt;
The male fly of &#039;&#039;Drosophila melanogaster&#039;&#039; produce the pheromone 11-cis vaccenyl acetate which mediates aggregation behavior of other flys of the same species&amp;lt;ref&amp;gt;doi:10.1523/JNEUROSCI.0876-06.2006&amp;lt;/ref&amp;gt;. The detection of the pheromone, was shown to be mediated by pheromone-induced conformational shifts in the PBP, &amp;lt;scene name=&#039;61/614066/Lush/1&#039;&amp;gt;LUSH&amp;lt;/scene&amp;gt;. In fact, the trigering of the neuron was possible in the absence of the pheromone itself&amp;lt;ref&amp;gt;doi: m10.1016/j.cell.2008.04.046&amp;lt;/ref&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;CSP&#039;&#039;&#039;&lt;br /&gt;
This protein family which was discovered after the OBP family, though having a similar alpha helice structure, is shorter and bear only 4 conserved cysteins that forms 2 disulfide bridges. &lt;br /&gt;
In the moth &#039;&#039;Mamestra brassicae&#039;&#039; a member of the CSP family, CSPMbraA6, was isolated from the moth antennae. It was shown that the protein can bind &amp;lt;scene name=&#039;61/614066/Mamestra_brassicae_csp/1&#039;&amp;gt;three molecules of its ligand, 12-bromo-dodecanol&amp;lt;/scene&amp;gt; at the same time&amp;lt;ref&amp;gt;doi: 10.1073/pnas.0836654100&amp;lt;/ref&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;NPC2&#039;&#039;&#039;&lt;br /&gt;
Recently, a new family of proteins have been suggested to play a role as a soluble protein. Until now NPC2 proteins were known to carry lipids and cholesterol molecules in the cells&amp;lt;ref&amp;gt;doi: 10.1016/j.bbalip.2004.08.007&amp;lt;/ref&amp;gt;, yet a member of this family was isolated from the antennae of the ant &#039;&#039;Camponatus japonicus&#039;&#039;&amp;lt;ref name=&amp;quot;ishida&amp;quot; /&amp;gt;. This protein has a beta-barrel shape and &amp;lt;scene name=&#039;61/614066/Npc2_cysteins/2&#039;&amp;gt;6 cysteins forming 3 disulfide bonds&amp;lt;/scene&amp;gt; (similar to classical vertebrates OBP). Another conserved feature is the&amp;lt;scene name=&#039;61/614066/Resid_in_the_cavity_gate/2&#039;&amp;gt;6 conserved hydrophobic residues at the gate of the cavity&amp;lt;/scene&amp;gt;, supposedly attracting the hydrophobic ligand to the cavity&amp;lt;ref&amp;gt;doi: 10.1074/jbc.M703848200.STRUCTURAL&amp;lt;/ref&amp;gt;. This first finding could explain the small number of known soluble proteins in some insects and other arthropods, relativity to their ability to sense large number of volatiles.    &lt;br /&gt;
&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
== See also == &lt;br /&gt;
*[[Odorant_binding_protein_3D_structures]]&lt;br /&gt;
*For comprehensive explanation about quorum sensing please turn to Fuqua et al. (2001) &amp;lt;ref&amp;gt;DOI: 10.1146/annurev.genet.35.102401.090913 &amp;lt;/ref&amp;gt;.&lt;br /&gt;
*for more information about the protein-ligand interaction, you may go to [[Odorant binding protein]].&lt;br /&gt;
== References ==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Nurit Eliash</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Chemical_communication_in_arthropods&amp;diff=2368866</id>
		<title>Chemical communication in arthropods</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Chemical_communication_in_arthropods&amp;diff=2368866"/>
		<updated>2015-01-28T13:57:57Z</updated>

		<summary type="html">&lt;p&gt;Nurit Eliash: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;[[Image:Sensilla.png|thumb|upright=1.5|Figure 1: Vertebrate (a), and insect (b) sensilla. Figure 1 from Kaupp (2010), used with permission of Prof. U. Benjamin Kaupp.]] &lt;br /&gt;
[[Image:Signal trunsdution - Sanchez 2009.jpg|thumb|right|upright=2|Figure 2.(a) Schematic representation of the general structure of an insect olfactory hair; (b) The first molecular steps of the insect chemosensory signaling transduction pathway. Figure 1 from Sánchez-Gracia et al.(2009)&amp;lt;ref&amp;gt;doi: 10.1038/hdy.2009.55&amp;lt;/ref&amp;gt;, used with permission of Prof. Sa´nchez-Gracia.]]&lt;br /&gt;
 [[Image:Vieira and Rozas 2011 fig7.JPG|thumb|upright=1.5|Figure 3. The evolution of the Chemosensory System. Blue boxes represent the aquatic lifestyle. Right: Presence or absence of the chemosensory gene families in extant species. Branch lengths are not to scale. Figure 7 from Vieira and Rozas (2011), used with permission of Prof Julio Rozas &amp;lt;ref name=&amp;quot;Vieira and Rozas&amp;quot;&amp;gt;DOI: 10.1093/gbe/evr033&amp;lt;/ref&amp;gt;]] &lt;br /&gt;
&lt;br /&gt;
==The molecular basis of chemical communication==&lt;br /&gt;
The sense of smell, [http://en.wikipedia.org/wiki/Olfaction Olfaction] is a primary sense in nature. It plays a significant role in behaviors which are crucial for the organism survival: food searching, host and mating selection, and avoiding predators and pathogens &amp;lt;ref name=&amp;quot;kaupp&amp;quot;&amp;gt;DOI: 10.1038/nrn2789&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
In both [http://en.wikipedia.org/wiki/Arthropod arthropods] and [http://en.wikipedia.org/wiki/Vertebrate vertebrates] the detection of volatiles is completed by a complicated process which is mediated by soluble as well as transmembrane proteins &amp;lt;ref name=&amp;quot;pelosi&amp;quot;&amp;gt;DOI: 10.3389/fphys.2014.00320&amp;lt;/ref&amp;gt;.&lt;br /&gt;
It should be mentioned that the detection of [http://en.wikipedia.org/wiki/Pheromone pheromones] is also vital to microorganisms, as it regulates gene expression in what is termed [http://en.wikipedia.org/wiki/Quorum_sensing “quorum sensing”].  &lt;br /&gt;
In arthropods, most of what is known on chemosensory communication is based on insects&#039; research. The process begins when a volatile (mostly a small [http://en.wikipedia.org/wiki/Hydrophobe hydrophobic] molecule) enters the chemosensilla lymph of an insect, or the mucus of a vertebrate in the nasal cavity ([[fig 1]]). Both mediums are abundant in soluble proteins which binds to the hydrophobic molecules, solubilizes and carries it to the [http://en.wikipedia.org/wiki/Chemoreceptor chemoreceptors] on the dendritic membrane of the olfactory receptor neuron &amp;lt;ref name=&amp;quot;kaupp&amp;quot; /&amp;gt;&amp;lt;ref&amp;gt;Vogt RG (2005) Molecular basis of pheromone detection in insects. Comprehensive Insect Physiology, Biochemistry, Pharmacology and Molecular Biology, eds Gilbert LI, Iatro K, Gills S (Elsevier, London), Vol 3, pp 753–804.&amp;lt;/ref&amp;gt;.The chemical signal is there by translated into an electrical signal which can cause an immediate response, or further elaborate with other signals in the insect&#039;s mushroom bodies or vertebrate&#039;s brain ([[fig 2]])&amp;lt;ref&amp;gt;doi: 10.3389/fncel.2012.00048&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;doi: 10.1146/annurev-ento-120811-153635&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== What is the differences and similarities between Arthropods and Vertebrates? ==&lt;br /&gt;
 &lt;br /&gt;
Though functionally similar, receptors as well as soluble proteins are structurally and genetically unrelated in insects and vertebrates (see [[fig 3]] for the putative evolution of proteins involved in chemosensory system).   &lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;Receptors&#039;&#039;&#039; &lt;br /&gt;
Most of the vertebrates&#039; chemosensory receptors are metabotropic and belong to the [[G protein-coupled receptors]]. Once the volatile binds to the receptor it initiates intracellular signal transduction &amp;lt;ref&amp;gt;doi: 10.1016/S0167-4838(00)00167-9&amp;lt;/ref&amp;gt;. On the other hand, arthropods&#039; and insects&#039; chemoreceptors are composed of two subunits: [http://en.wikipedia.org/wiki/Olfactory_receptor Receptor] and [http://en.wikipedia.org/wiki/Co-receptor Co-receptor] that upon interaction with the volatile or the complex of volatile-soluble protein, are activated and serve as an [http://en.wikipedia.org/wiki/Ion_channel ion channel]. The opening of the ion channel changes the [http://en.wikipedia.org/wiki/Membrane_potential membrane potential], and starts the inter-cellular signal transduction&amp;lt;ref&amp;gt;Vogt RG (2005) Molecular basis of pheromone detection in insects. Comprehensive Insect Physiology, Biochemistry, Pharmacology and Molecular Biology, eds Gilbert LI, Iatro K, Gills S (Elsevier, London), Vol 3, pp 753–804.&amp;lt;/ref&amp;gt;.[[Image:Chemoreceptors-insects.jpg|thumb|center|upright=2.5|Figure 4: Types of insect receptors. Figure 1 from Kaupp (2010), used with permission of Prof. U. Benjamin Kaupp.]]    &lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;Soluble proteins&#039;&#039;&#039;&lt;br /&gt;
These proteins which are concentrated in the sensillar lymph, solubilize and carry the volatile molecules to the receptor. &lt;br /&gt;
There are two main known types of soluble proteins that are involved in arthropods&#039; chemical communication: &#039;&#039;&#039;[http://proteopedia.org/w/Odorant_binding_protein Odorant binding proteins –OBPs]&#039;&#039;&#039;,&#039;&#039;&#039;[http://proteopedia.org/wiki/index.php/Chemosensory_protein Chemosensory protein-CSP]&#039;&#039;&#039; ([[fig 5]]). Though bearing the same name and participating in the same function, OBP of vertebrates and arthropods are two distinct families with completely different structure and origin&amp;lt;ref name=&amp;quot;pelosi&amp;quot; /&amp;gt;. Arthropods&#039; OBP are composed of alpha helices, while vertebrates&#039; OBP belong to the [http://en.wikipedia.org/wiki/Lipocalin Lipocalins] super family and have a beta-barrel structure (for structure comparison, see [[table 1]] and [[fig 5]]). Recently, another family of protein has been suggested to play a role in ant chemical communication, &#039;&#039;&#039;[https://www.wikigenes.org/e/gene/e/10577.html Niemann-Pick type C2 protein-NPC2]&#039;&#039;&#039; &amp;lt;ref name=&amp;quot;ishida&amp;quot;&amp;gt;DOI: 10.1073/pnas.1323928111&amp;lt;/ref&amp;gt;. &lt;br /&gt;
[[Image:Fig 3 soluble proteins.png|thumb|center|upright=3|Figure 5. (a) An example for vertebrate&#039;s OBP-a pig OBP, PDB:[[1e06]]; (b) An example for insect&#039;s OBP- &#039;&#039;Bombyx mori&#039;&#039; PBP, PDB:[[1dqe]]; (c) An example for insect&#039;s CSP-&#039;&#039;Mamestra brassicae&#039;&#039; CSP2 PDB:[[1n8u]]]]&lt;br /&gt;
[[Image:Soluble proteins table.png|thumb|center|upright=2|Table 1. Summation of the main structure properties of soluble proteins types]]&lt;br /&gt;
&lt;br /&gt;
==Types of Soluble proteins in arthropods== &lt;br /&gt;
&amp;lt;StructureSection load=&#039;1OOH&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;&#039;&#039;Mamestra brassicae&#039;&#039; CSP2 PDB:[[1n8u]]&#039; scene=&#039;&#039;&amp;gt;&lt;br /&gt;
In each protein the consereved &amp;lt;font color=#FF7E00&amp;gt;&amp;lt;b&amp;gt;&#039;&#039;&#039;cysteins&#039;&#039;&#039;&amp;lt;/b&amp;gt;&amp;lt;/font&amp;gt;and the &amp;lt;font color=#FDEE00&amp;gt;&amp;lt;b&amp;gt;&#039;&#039;&#039;disulfide bonds&#039;&#039;&#039;&amp;lt;/b&amp;gt;&amp;lt;/font&amp;gt; are color marked.&lt;br /&gt;
*&#039;&#039;&#039;OBP&#039;&#039;&#039;&lt;br /&gt;
This family was the first soluble protein discovered in the chemosensory system of arthropods. Its general strcuture is of alpha helices that are compactly tied by 3 disulfid bridges formed by 6 consereved cystein residues. &lt;br /&gt;
The male fly of &#039;&#039;Drosophila melanogaster&#039;&#039; produce the pheromone 11-cis vaccenyl acetate which mediates aggregation behavior of other flys of the same species&amp;lt;ref&amp;gt;doi:10.1523/JNEUROSCI.0876-06.2006&amp;lt;/ref&amp;gt;. The detection of the pheromone, was shown to be mediated by pheromone-induced conformational shifts in the PBP, &amp;lt;scene name=&#039;61/614066/Lush/1&#039;&amp;gt;LUSH&amp;lt;/scene&amp;gt;. In fact, the trigering of the neuron was possible in the absence of the pheromone itself&amp;lt;ref&amp;gt;doi: m10.1016/j.cell.2008.04.046&amp;lt;/ref&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;CSP&#039;&#039;&#039;&lt;br /&gt;
This protein family which was discovered after the OBP family, though having a similar alpha helice structure, is shorter and bear only 4 conserved cysteins that forms 2 disulfide bridges. &lt;br /&gt;
In the moth &#039;&#039;Mamestra brassicae&#039;&#039; a member of the CSP family, CSPMbraA6, was isolated from the moth antennae. It was shown that the protein can bind &amp;lt;scene name=&#039;61/614066/Mamestra_brassicae_csp/1&#039;&amp;gt;three molecules of its ligand, 12-bromo-dodecanol&amp;lt;/scene&amp;gt; at the same time&amp;lt;ref&amp;gt;doi: 10.1073/pnas.0836654100&amp;lt;/ref&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;NPC2&#039;&#039;&#039;&lt;br /&gt;
Recently, a new family of proteins have been suggested to play a role as a soluble protein. Until now NPC2 proteins were known to carry lipids and cholesterol molecules in the cells&amp;lt;ref&amp;gt;doi: 10.1016/j.bbalip.2004.08.007&amp;lt;/ref&amp;gt;, yet a member of this family was isolated from the antennae of the ant &#039;&#039;Camponatus japonicus&#039;&#039;&amp;lt;ref name=&amp;quot;ishida&amp;quot; /&amp;gt;. This protein has a beta-barrel shape and &amp;lt;scene name=&#039;61/614066/Npc2_cysteins/2&#039;&amp;gt;6 cysteins forming 3 disulfide bonds&amp;lt;/scene&amp;gt; (similar to classical vertebrates OBP). Another conserved feature is the&amp;lt;scene name=&#039;61/614066/Resid_in_the_cavity_gate/2&#039;&amp;gt;6 conserved hydrophobic residues at the gate of the cavity&amp;lt;/scene&amp;gt;, supposedly attracting the hydrophobic ligand to the cavity&amp;lt;ref&amp;gt;doi: 10.1074/jbc.M703848200.STRUCTURAL&amp;lt;/ref&amp;gt;. This first finding could explain the small number of known soluble proteins in some insects and other arthropods, relativity to their ability to sense large number of volatiles.    &lt;br /&gt;
&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
== See also == &lt;br /&gt;
*[[Odorant_binding_protein_3D_structures]]&lt;br /&gt;
*For comprehensive explanation about quorum sensing please turn to Fuqua et al. (2001) &amp;lt;ref&amp;gt;DOI: 10.1146/annurev.genet.35.102401.090913 &amp;lt;/ref&amp;gt;.&lt;br /&gt;
*for more information about the protein-ligand interaction, you may go to [[Odorant binding protein]].&lt;br /&gt;
== References ==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Nurit Eliash</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Chemical_communication_in_arthropods&amp;diff=2368865</id>
		<title>Chemical communication in arthropods</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Chemical_communication_in_arthropods&amp;diff=2368865"/>
		<updated>2015-01-28T13:54:58Z</updated>

		<summary type="html">&lt;p&gt;Nurit Eliash: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;[[Image:Sensilla.png|thumb|upright=1.5|Figure 1: Vertebrate (a), and insect (b) sensilla. Figure 1 from Kaupp (2010), used with permission of Prof. U. Benjamin Kaupp.]] &lt;br /&gt;
[[Image:Signal trunsdution - Sanchez 2009.jpg|thumb|right|upright=2|Figure 2.(a) Schematic representation of the general structure of an insect olfactory hair; (b) The first molecular steps of the insect chemosensory signaling transduction pathway. Figure 1 from Sánchez-Gracia et al.(2009)&amp;lt;ref&amp;gt;doi: 10.1038/hdy.2009.55&amp;lt;/ref&amp;gt;, used with permission of Prof. Sa´nchez-Gracia.]]&lt;br /&gt;
 [[Image:Vieira and Rozas 2011 fig7.JPG|thumb|upright=1.5|Figure 3. The evolution of the Chemosensory System. Blue boxes represent the aquatic lifestyle. Right: Presence or absence of the chemosensory gene families in extant species. Branch lengths are not to scale. Figure 7 from Vieira and Rozas (2011), used with permission of Prof Julio Rozas &amp;lt;ref name=&amp;quot;Vieira and Rozas&amp;quot;&amp;gt;DOI: 10.1093/gbe/evr033&amp;lt;/ref&amp;gt;]] &lt;br /&gt;
&lt;br /&gt;
==The molecular basis of chemical communication==&lt;br /&gt;
The sense of smell, [http://en.wikipedia.org/wiki/Olfaction Olfaction] is a primary sense in nature. It plays a significant role in behaviors which are crucial for the organism survival: food searching, host and mating selection, and avoiding predators and pathogens &amp;lt;ref name=&amp;quot;kaupp&amp;quot;&amp;gt;DOI: 10.1038/nrn2789&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
In both [http://en.wikipedia.org/wiki/Arthropod arthropods] and [http://en.wikipedia.org/wiki/Vertebrate vertebrates] the detection of volatiles is completed by a complicated process which is mediated by soluble as well as transmembrane proteins &amp;lt;ref name=&amp;quot;pelosi&amp;quot;&amp;gt;DOI: 10.3389/fphys.2014.00320&amp;lt;/ref&amp;gt;.&lt;br /&gt;
It should be mentioned that the detection of [http://en.wikipedia.org/wiki/Pheromone pheromones] is also vital to microorganisms, as it regulates gene expression in what is termed [http://en.wikipedia.org/wiki/Quorum_sensing “quorum sensing”].  &lt;br /&gt;
In arthropods, most of what is known on chemosensory communication is based on insects&#039; research. The process begins when a volatile (mostly a small [http://en.wikipedia.org/wiki/Hydrophobe hydrophobic] molecule) enters the chemosensilla lymph of an insect, or the mucus of a vertebrate in the nasal cavity ([[fig 1]]). Both mediums are abundant in soluble proteins which binds to the hydrophobic molecules, solubilizes and carries it to the [http://en.wikipedia.org/wiki/Chemoreceptor chemoreceptors] on the dendritic membrane of the olfactory receptor neuron &amp;lt;ref name=&amp;quot;kaupp&amp;quot; /&amp;gt;&amp;lt;ref&amp;gt;Vogt RG (2005) Molecular basis of pheromone detection in insects. Comprehensive Insect Physiology, Biochemistry, Pharmacology and Molecular Biology, eds Gilbert LI, Iatro K, Gills S (Elsevier, London), Vol 3, pp 753–804.&amp;lt;/ref&amp;gt;.The chemical signal is there by translated into an electrical signal which can cause an immediate response, or further elaborate with other signals in the insect&#039;s mushroom bodies or vertebrate&#039;s brain ([[fig 2]])&amp;lt;ref&amp;gt;doi: 10.3389/fncel.2012.00048&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;doi: 10.1146/annurev-ento-120811-153635&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== What is the differences and similarities between Arthropods and Vertebrates? ==&lt;br /&gt;
 &lt;br /&gt;
Though functionally similar, receptors as well as soluble proteins are structurally and genetically unrelated in insects and vertebrates (see [[fig 3]] for the putative evolution of proteins involved in chemosensory system).   &lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;Receptors&#039;&#039;&#039; &lt;br /&gt;
Most of the vertebrates&#039; chemosensory receptors are metabotropic and belong to the [[G protein-coupled receptors]]. Once the volatile binds to the receptor it initiates intracellular signal transduction &amp;lt;ref&amp;gt;doi: 10.1016/S0167-4838(00)00167-9&amp;lt;/ref&amp;gt;. On the other hand, arthropods&#039; and insects&#039; chemoreceptors are composed of two subunits: [http://en.wikipedia.org/wiki/Olfactory_receptor Receptor] and [http://en.wikipedia.org/wiki/Co-receptor Co-receptor] that upon interaction with the volatile or the complex of volatile-soluble protein, are activated and serve as an [http://en.wikipedia.org/wiki/Ion_channel ion channel]. The opening of the ion channel changes the [http://en.wikipedia.org/wiki/Membrane_potential membrane potential], and starts the inter-cellular signal transduction&amp;lt;ref&amp;gt;Vogt RG (2005) Molecular basis of pheromone detection in insects. Comprehensive Insect Physiology, Biochemistry, Pharmacology and Molecular Biology, eds Gilbert LI, Iatro K, Gills S (Elsevier, London), Vol 3, pp 753–804.&amp;lt;/ref&amp;gt;.[[Image:Chemoreceptors-insects.jpg|thumb|center|upright=2.5|Figure 4: Types of insect receptors. Figure 1 from Kaupp (2010), used with permission of Prof. U. Benjamin Kaupp.]]    &lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;Soluble proteins&#039;&#039;&#039;&lt;br /&gt;
These proteins which are concentrated in the sensillar lymph, solubilize and carry the volatile molecules to the receptor. &lt;br /&gt;
There are two main known types of soluble proteins that are involved in arthropods&#039; chemical communication: &#039;&#039;&#039;[http://proteopedia.org/w/Odorant_binding_protein Odorant binding proteins –OBPs]&#039;&#039;&#039;,&#039;&#039;&#039;[http://proteopedia.org/wiki/index.php/Chemosensory_protein Chemosensory protein-CSP]&#039;&#039;&#039; ([[fig 5]]). Though bearing the same name and participating in the same function, OBP of vertebrates and arthropods are two distinct families with completely different structure and origin&amp;lt;ref name=&amp;quot;pelosi&amp;quot; /&amp;gt;. Arthropods&#039; OBP are composed of alpha helices, while vertebrates&#039; OBP belong to the [http://en.wikipedia.org/wiki/Lipocalin Lipocalins] super family and have a beta-barrel structure (for structure comparison, see [[table 1]] and [[fig 5]]). Recently, another family of protein has been suggested to play a role in ant chemical communication, &#039;&#039;&#039;[https://www.wikigenes.org/e/gene/e/10577.html Niemann-Pick type C2 protein-NPC2]&#039;&#039;&#039; &amp;lt;ref name=&amp;quot;ishida&amp;quot;&amp;gt;DOI: 10.1073/pnas.1323928111&amp;lt;/ref&amp;gt;. &lt;br /&gt;
[[Image:Fig 3 soluble proteins.png|thumb|center|upright=3|Figure 5. (a) An example for vertebrate&#039;s OBP-a pig OBP, PDB:[[1e06]]; (b) An example for insect&#039;s OBP- &#039;&#039;Bombyx mori&#039;&#039; PBP, PDB:[[1dqe]]; (c) An example for insect&#039;s CSP-&#039;&#039;Mamestra brassicae&#039;&#039; CSP2 PDB:[[1n8u]]]]&lt;br /&gt;
[[Image:Soluble proteins table.png|thumb|center|upright=2|Table 1. Summation of the main structure properties of soluble proteins types]]&lt;br /&gt;
&lt;br /&gt;
==Types of Soluble proteins in arthropods== &lt;br /&gt;
&amp;lt;StructureSection load=&#039;1OOH&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;&#039;&#039;Mamestra brassicae&#039;&#039; CSP2 PDB:[[1n8u]]&#039; scene=&#039;&#039;&amp;gt;&lt;br /&gt;
In each protein the consereved &amp;lt;font color=#FF7E00&amp;gt;&amp;lt;b&amp;gt;&#039;&#039;&#039;cysteins&#039;&#039;&#039;&amp;lt;/b&amp;gt;&amp;lt;/font&amp;gt;and the &amp;lt;font color=#FDEE00&amp;gt;&amp;lt;b&amp;gt;&#039;&#039;&#039;disulfide bonds&#039;&#039;&#039;&amp;lt;/b&amp;gt;&amp;lt;/font&amp;gt; are color marked.&lt;br /&gt;
*&#039;&#039;&#039;OBP&#039;&#039;&#039;&lt;br /&gt;
This family was the first soluble protein discovered in the chemosensory system of arthropods. Its general strcuture is of alpha helices that are compactly tied by 3 disulfid bridges formed by 6 consereved cystein residues. &lt;br /&gt;
The male fly of &#039;&#039;Drosophila melanogaster&#039;&#039; produce the pheromone 11-cis vaccenyl acetate which mediates aggregation behavior of other flys of the same species&amp;lt;ref&amp;gt;doi:10.1523/JNEUROSCI.0876-06.2006&amp;lt;/ref&amp;gt;. The detection of the pheromone, was shown to be mediated by pheromone-induced conformational shifts in the PBP, &amp;lt;scene name=&#039;61/614066/Lush/1&#039;&amp;gt;LUSH&amp;lt;/scene&amp;gt;. In fact, the trigering of the neuron was possible in the absence of the pheromone itself&amp;lt;ref&amp;gt;doi: m10.1016/j.cell.2008.04.046&amp;lt;/ref&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;CSP&#039;&#039;&#039;&lt;br /&gt;
This protein family which was discovered after the OBP family, though having a similar alpha helice structure, is shorter and bear only 4 conserved cysteins that forms 2 disulfide bridges. &lt;br /&gt;
In the moth &#039;&#039;Mamestra brassicae&#039;&#039; a member of the CSP family, CSPMbraA6, was isolated from the moth antennae. It was shown that the protein can bind &amp;lt;scene name=&#039;61/614066/Mamestra_brassicae_csp/1&#039;&amp;gt;three molecules of its ligand, 12-bromo-dodecanol&amp;lt;/scene&amp;gt; at the same time&amp;lt;ref&amp;gt;doi: 10.1073/pnas.0836654100&amp;lt;/ref&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;NPC2&#039;&#039;&#039;&lt;br /&gt;
Recently, a new family of proteins have been suggested to play a role as a soluble protein. Until now NPC2 proteins were known to carry lipids and cholesterol molecules in the cells&amp;lt;ref&amp;gt;doi: 10.1016/j.bbalip.2004.08.007&amp;lt;/ref&amp;gt;, yet a member of this family was isolated from the antennae of the ant &#039;&#039;Camponatus japonicus&#039;&#039;&amp;lt;ref name=&amp;quot;ishida&amp;quot; /&amp;gt;. This protein has a beta-barrel shape and &amp;lt;scene name=&#039;61/614066/Npc2_cysteins/2&#039;&amp;gt;6 cysteins forming 3 disulfide bonds&amp;lt;/scene&amp;gt; (similar to classical vertebrates OBP). Another conserved feature is the &amp;lt;scene name=&#039;61/614066/Npc2_cysteins/1&#039;&amp;gt;6 conserved hydrophobic residues at the gate of the cavity&amp;lt;/scene&amp;gt;, supposedly attracting the hydrophobic ligand to the cavity&amp;lt;ref&amp;gt;doi: 10.1074/jbc.M703848200.STRUCTURAL&amp;lt;/ref&amp;gt;. This first finding could explain the small number of known soluble proteins in some insects and other arthropods, relativity to their ability to sense large number of volatiles.    &lt;br /&gt;
&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
== See also == &lt;br /&gt;
*[[Odorant_binding_protein_3D_structures]]&lt;br /&gt;
*For comprehensive explanation about quorum sensing please turn to Fuqua et al. (2001) &amp;lt;ref&amp;gt;DOI: 10.1146/annurev.genet.35.102401.090913 &amp;lt;/ref&amp;gt;.&lt;br /&gt;
*for more information about the protein-ligand interaction, you may go to [[Odorant binding protein]].&lt;br /&gt;
== References ==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Nurit Eliash</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Chemical_communication_in_arthropods&amp;diff=2368864</id>
		<title>Chemical communication in arthropods</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Chemical_communication_in_arthropods&amp;diff=2368864"/>
		<updated>2015-01-28T13:54:16Z</updated>

		<summary type="html">&lt;p&gt;Nurit Eliash: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;[[Image:Sensilla.png|thumb|upright=1.5|Figure 1: Vertebrate (a), and insect (b) sensilla. Figure 1 from Kaupp (2010), used with permission of Prof. U. Benjamin Kaupp.]] &lt;br /&gt;
[[Image:Signal trunsdution - Sanchez 2009.jpg|thumb|right|upright=2|Figure 2.(a) Schematic representation of the general structure of an insect olfactory hair; (b) The first molecular steps of the insect chemosensory signaling transduction pathway. Figure 1 from Sánchez-Gracia et al.(2009)&amp;lt;ref&amp;gt;doi: 10.1038/hdy.2009.55&amp;lt;/ref&amp;gt;, used with permission of Prof. Sa´nchez-Gracia.]]&lt;br /&gt;
 [[Image:Vieira and Rozas 2011 fig7.JPG|thumb|upright=1.5|Figure 3. The evolution of the Chemosensory System. Blue boxes represent the aquatic lifestyle. Right: Presence or absence of the chemosensory gene families in extant species. Branch lengths are not to scale. Figure 7 from Vieira and Rozas (2011), used with permission of Prof Julio Rozas &amp;lt;ref name=&amp;quot;Vieira and Rozas&amp;quot;&amp;gt;DOI: 10.1093/gbe/evr033&amp;lt;/ref&amp;gt;]] &lt;br /&gt;
&lt;br /&gt;
==The molecular basis of chemical communication==&lt;br /&gt;
The sense of smell, [http://en.wikipedia.org/wiki/Olfaction Olfaction] is a primary sense in nature. It plays a significant role in behaviors which are crucial for the organism survival: food searching, host and mating selection, and avoiding predators and pathogens &amp;lt;ref name=&amp;quot;kaupp&amp;quot;&amp;gt;DOI: 10.1038/nrn2789&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
In both [http://en.wikipedia.org/wiki/Arthropod arthropods] and [http://en.wikipedia.org/wiki/Vertebrate vertebrates] the detection of volatiles is completed by a complicated process which is mediated by soluble as well as transmembrane proteins &amp;lt;ref name=&amp;quot;pelosi&amp;quot;&amp;gt;DOI: 10.3389/fphys.2014.00320&amp;lt;/ref&amp;gt;.&lt;br /&gt;
It should be mentioned that the detection of [http://en.wikipedia.org/wiki/Pheromone pheromones] is also vital to microorganisms, as it regulates gene expression in what is termed [http://en.wikipedia.org/wiki/Quorum_sensing “quorum sensing”].  &lt;br /&gt;
In arthropods, most of what is known on chemosensory communication is based on insects&#039; research. The process begins when a volatile (mostly a small [http://en.wikipedia.org/wiki/Hydrophobe hydrophobic] molecule) enters the chemosensilla lymph of an insect, or the mucus of a vertebrate in the nasal cavity ([[fig 1]]). Both mediums are abundant in soluble proteins which binds to the hydrophobic molecules, solubilizes and carries it to the [http://en.wikipedia.org/wiki/Chemoreceptor chemoreceptors] on the dendritic membrane of the olfactory receptor neuron &amp;lt;ref name=&amp;quot;kaupp&amp;quot; /&amp;gt;&amp;lt;ref&amp;gt;Vogt RG (2005) Molecular basis of pheromone detection in insects. Comprehensive Insect Physiology, Biochemistry, Pharmacology and Molecular Biology, eds Gilbert LI, Iatro K, Gills S (Elsevier, London), Vol 3, pp 753–804.&amp;lt;/ref&amp;gt;.The chemical signal is there by translated into an electrical signal which can cause an immediate response, or further elaborate with other signals in the insect&#039;s mushroom bodies or vertebrate&#039;s brain ([[fig 2]])&amp;lt;ref&amp;gt;doi: 10.3389/fncel.2012.00048&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;doi: 10.1146/annurev-ento-120811-153635&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== What is the differences and similarities between Arthropods and Vertebrates? ==&lt;br /&gt;
 &lt;br /&gt;
Though functionally similar, receptors as well as soluble proteins are structurally and genetically unrelated in insects and vertebrates (see [[fig 3]] for the putative evolution of proteins involved in chemosensory system).   &lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;Receptors&#039;&#039;&#039; &lt;br /&gt;
Most of the vertebrates&#039; chemosensory receptors are metabotropic and belong to the [[G protein-coupled receptors]]. Once the volatile binds to the receptor it initiates intracellular signal transduction &amp;lt;ref&amp;gt;doi: 10.1016/S0167-4838(00)00167-9&amp;lt;/ref&amp;gt;. On the other hand, arthropods&#039; and insects&#039; chemoreceptors are composed of two subunits: [http://en.wikipedia.org/wiki/Olfactory_receptor Receptor] and [http://en.wikipedia.org/wiki/Co-receptor Co-receptor] that upon interaction with the volatile or the complex of volatile-soluble protein, are activated and serve as an [http://en.wikipedia.org/wiki/Ion_channel ion channel]. The opening of the ion channel changes the [http://en.wikipedia.org/wiki/Membrane_potential membrane potential], and starts the inter-cellular signal transduction&amp;lt;ref&amp;gt;Vogt RG (2005) Molecular basis of pheromone detection in insects. Comprehensive Insect Physiology, Biochemistry, Pharmacology and Molecular Biology, eds Gilbert LI, Iatro K, Gills S (Elsevier, London), Vol 3, pp 753–804.&amp;lt;/ref&amp;gt;.[[Image:Chemoreceptors-insects.jpg|thumb|center|upright=2.5|Figure 4: Types of insect receptors. Figure 1 from Kaupp (2010), used with permission of Prof. U. Benjamin Kaupp.]]    &lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;Soluble proteins&#039;&#039;&#039;&lt;br /&gt;
These proteins which are concentrated in the sensillar lymph, solubilize and carry the volatile molecules to the receptor. &lt;br /&gt;
There are two main known types of soluble proteins that are involved in arthropods&#039; chemical communication: &#039;&#039;&#039;[http://proteopedia.org/w/Odorant_binding_protein Odorant binding proteins –OBPs]&#039;&#039;&#039;,&#039;&#039;&#039;[http://proteopedia.org/wiki/index.php/Chemosensory_protein Chemosensory protein-CSP]&#039;&#039;&#039; ([[fig 5]]). Though bearing the same name and participating in the same function, OBP of vertebrates and arthropods are two distinct families with completely different structure and origin&amp;lt;ref name=&amp;quot;pelosi&amp;quot; /&amp;gt;. Arthropods&#039; OBP are composed of alpha helices, while vertebrates&#039; OBP belong to the [http://en.wikipedia.org/wiki/Lipocalin Lipocalins] super family and have a beta-barrel structure (for structure comparison, see [[table 1]] and [[fig 5]]). Recently, another family of protein has been suggested to play a role in ant chemical communication, &#039;&#039;&#039;[https://www.wikigenes.org/e/gene/e/10577.html Niemann-Pick type C2 protein-NPC2]&#039;&#039;&#039; &amp;lt;ref name=&amp;quot;ishida&amp;quot;&amp;gt;DOI: 10.1073/pnas.1323928111&amp;lt;/ref&amp;gt;. &lt;br /&gt;
[[Image:Fig 3 soluble proteins.png|thumb|center|upright=3|Figure 5. (a) An example for vertebrate&#039;s OBP-a pig OBP, PDB:[[1e06]]; (b) An example for insect&#039;s OBP- &#039;&#039;Bombyx mori&#039;&#039; PBP, PDB:[[1dqe]]; (c) An example for insect&#039;s CSP-&#039;&#039;Mamestra brassicae&#039;&#039; CSP2 PDB:[[1n8u]]]]&lt;br /&gt;
[[Image:Soluble proteins table.png|thumb|center|upright=2|Table 1. Summation of the main structure properties of soluble proteins types]]&lt;br /&gt;
&lt;br /&gt;
==Types of Soluble proteins in arthropods== &lt;br /&gt;
&amp;lt;StructureSection load=&#039;1OOH&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;&#039;&#039;Mamestra brassicae&#039;&#039; CSP2 PDB:[[1n8u]]&#039; scene=&#039;&#039;&amp;gt;&lt;br /&gt;
In each protein the consereved &amp;lt;font color=#FF7E00&amp;gt;&amp;lt;b&amp;gt;&#039;&#039;&#039;cysteins&#039;&#039;&#039;&amp;lt;/b&amp;gt;&amp;lt;/font&amp;gt;and the &amp;lt;font color=#FDEE00&amp;gt;&amp;lt;b&amp;gt;&#039;&#039;&#039;disulfide bonds&#039;&#039;&#039;&amp;lt;/b&amp;gt;&amp;lt;/font&amp;gt; are color marked.&lt;br /&gt;
*&#039;&#039;&#039;OBP&#039;&#039;&#039;&lt;br /&gt;
This family was the first soluble protein discovered in the chemosensory system of arthropods. Its general strcuture is of alpha helices that are compactly tied by 3 disulfid bridges formed by 6 consereved cystein residues. &lt;br /&gt;
The male fly of &#039;&#039;Drosophila melanogaster&#039;&#039; produce the pheromone 11-cis vaccenyl acetate which mediates aggregation behavior of other flys of the same species&amp;lt;ref&amp;gt;doi:10.1523/JNEUROSCI.0876-06.2006&amp;lt;/ref&amp;gt;. The detection of the pheromone, was shown to be mediated by pheromone-induced conformational shifts in the PBP, &amp;lt;scene name=&#039;61/614066/Lush/1&#039;&amp;gt;LUSH&amp;lt;/scene&amp;gt;. In fact, the trigering of the neuron was possible in the absence of the pheromone itself&amp;lt;ref&amp;gt;doi: m10.1016/j.cell.2008.04.046&amp;lt;/ref&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;CSP&#039;&#039;&#039;&lt;br /&gt;
This protein family which was discovered after the OBP family, though having a similar alpha helice structure, is shorter and bear only 4 conserved cysteins that forms 2 disulfide bridges. &lt;br /&gt;
In the moth &#039;&#039;Mamestra brassicae&#039;&#039; a member of the CSP family, CSPMbraA6, was isolated from the moth antennae. It was shown that the protein can bind &amp;lt;scene name=&#039;61/614066/Mamestra_brassicae_csp/1&#039;&amp;gt;three molecules of its ligand, 12-bromo-dodecanol&amp;lt;/scene&amp;gt; at the same time&amp;lt;ref&amp;gt;doi: 10.1073/pnas.0836654100&amp;lt;/ref&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;NPC2&#039;&#039;&#039;&lt;br /&gt;
Recently, a new family of proteins have been suggested to play a role as a soluble protein. Until now NPC2 proteins were known to carry lipids and cholesterol molecules in the cells&amp;lt;ref&amp;gt;doi: 10.1016/j.bbalip.2004.08.007&amp;lt;/ref&amp;gt;, yet a member of this family was isolated from the antennae of the ant &#039;&#039;Camponatus japonicus&#039;&#039;&amp;lt;ref name=&amp;quot;ishida&amp;quot; /&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
== See also == &lt;br /&gt;
*[[Odorant_binding_protein_3D_structures]]&lt;br /&gt;
*For comprehensive explanation about quorum sensing please turn to Fuqua et al. (2001) &amp;lt;ref&amp;gt;DOI: 10.1146/annurev.genet.35.102401.090913 &amp;lt;/ref&amp;gt;.&lt;br /&gt;
*for more information about the protein-ligand interaction, you may go to [[Odorant binding protein]].&lt;br /&gt;
== References ==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Nurit Eliash</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Chemical_communication_in_arthropods&amp;diff=2368863</id>
		<title>Chemical communication in arthropods</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Chemical_communication_in_arthropods&amp;diff=2368863"/>
		<updated>2015-01-28T13:52:45Z</updated>

		<summary type="html">&lt;p&gt;Nurit Eliash: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;[[Image:Sensilla.png|thumb|upright=1.5|Figure 1: Vertebrate (a), and insect (b) sensilla. Figure 1 from Kaupp (2010), used with permission of Prof. U. Benjamin Kaupp.]] &lt;br /&gt;
[[Image:Signal trunsdution - Sanchez 2009.jpg|thumb|right|upright=2|Figure 2.(a) Schematic representation of the general structure of an insect olfactory hair; (b) The first molecular steps of the insect chemosensory signaling transduction pathway. Figure 1 from Sánchez-Gracia et al.(2009)&amp;lt;ref&amp;gt;doi: 10.1038/hdy.2009.55&amp;lt;/ref&amp;gt;, used with permission of Prof. Sa´nchez-Gracia.]]&lt;br /&gt;
 [[Image:Vieira and Rozas 2011 fig7.JPG|thumb|upright=1.5|Figure 3. The evolution of the Chemosensory System. Blue boxes represent the aquatic lifestyle. Right: Presence or absence of the chemosensory gene families in extant species. Branch lengths are not to scale. Figure 7 from Vieira and Rozas (2011), used with permission of Prof Julio Rozas &amp;lt;ref name=&amp;quot;Vieira and Rozas&amp;quot;&amp;gt;DOI: 10.1093/gbe/evr033&amp;lt;/ref&amp;gt;]] &lt;br /&gt;
&lt;br /&gt;
==The molecular basis of chemical communication==&lt;br /&gt;
The sense of smell, [http://en.wikipedia.org/wiki/Olfaction Olfaction] is a primary sense in nature. It plays a significant role in behaviors which are crucial for the organism survival: food searching, host and mating selection, and avoiding predators and pathogens &amp;lt;ref name=&amp;quot;kaupp&amp;quot;&amp;gt;DOI: 10.1038/nrn2789&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
In both [http://en.wikipedia.org/wiki/Arthropod arthropods] and [http://en.wikipedia.org/wiki/Vertebrate vertebrates] the detection of volatiles is completed by a complicated process which is mediated by soluble as well as transmembrane proteins &amp;lt;ref name=&amp;quot;pelosi&amp;quot;&amp;gt;DOI: 10.3389/fphys.2014.00320&amp;lt;/ref&amp;gt;.&lt;br /&gt;
It should be mentioned that the detection of [http://en.wikipedia.org/wiki/Pheromone pheromones] is also vital to microorganisms, as it regulates gene expression in what is termed [http://en.wikipedia.org/wiki/Quorum_sensing “quorum sensing”].  &lt;br /&gt;
In arthropods, most of what is known on chemosensory communication is based on insects&#039; research. The process begins when a volatile (mostly a small [http://en.wikipedia.org/wiki/Hydrophobe hydrophobic] molecule) enters the chemosensilla lymph of an insect, or the mucus of a vertebrate in the nasal cavity ([[fig 1]]). Both mediums are abundant in soluble proteins which binds to the hydrophobic molecules, solubilizes and carries it to the [http://en.wikipedia.org/wiki/Chemoreceptor chemoreceptors] on the dendritic membrane of the olfactory receptor neuron &amp;lt;ref name=&amp;quot;kaupp&amp;quot; /&amp;gt;&amp;lt;ref&amp;gt;Vogt RG (2005) Molecular basis of pheromone detection in insects. Comprehensive Insect Physiology, Biochemistry, Pharmacology and Molecular Biology, eds Gilbert LI, Iatro K, Gills S (Elsevier, London), Vol 3, pp 753–804.&amp;lt;/ref&amp;gt;.The chemical signal is there by translated into an electrical signal which can cause an immediate response, or further elaborate with other signals in the insect&#039;s mushroom bodies or vertebrate&#039;s brain ([[fig 2]])&amp;lt;ref&amp;gt;doi: 10.3389/fncel.2012.00048&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;doi: 10.1146/annurev-ento-120811-153635&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== What is the differences and similarities between Arthropods and Vertebrates? ==&lt;br /&gt;
 &lt;br /&gt;
Though functionally similar, receptors as well as soluble proteins are structurally and genetically unrelated in insects and vertebrates (see [[fig 3]] for the putative evolution of proteins involved in chemosensory system).   &lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;Receptors&#039;&#039;&#039; &lt;br /&gt;
Most of the vertebrates&#039; chemosensory receptors are metabotropic and belong to the [[G protein-coupled receptors]]. Once the volatile binds to the receptor it initiates intracellular signal transduction &amp;lt;ref&amp;gt;doi: 10.1016/S0167-4838(00)00167-9&amp;lt;/ref&amp;gt;. On the other hand, arthropods&#039; and insects&#039; chemoreceptors are composed of two subunits: [http://en.wikipedia.org/wiki/Olfactory_receptor Receptor] and [http://en.wikipedia.org/wiki/Co-receptor Co-receptor] that upon interaction with the volatile or the complex of volatile-soluble protein, are activated and serve as an [http://en.wikipedia.org/wiki/Ion_channel ion channel]. The opening of the ion channel changes the [http://en.wikipedia.org/wiki/Membrane_potential membrane potential], and starts the inter-cellular signal transduction&amp;lt;ref&amp;gt;Vogt RG (2005) Molecular basis of pheromone detection in insects. Comprehensive Insect Physiology, Biochemistry, Pharmacology and Molecular Biology, eds Gilbert LI, Iatro K, Gills S (Elsevier, London), Vol 3, pp 753–804.&amp;lt;/ref&amp;gt;.[[Image:Chemoreceptors-insects.jpg|thumb|center|upright=2.5|Figure 4: Types of insect receptors. Figure 1 from Kaupp (2010), used with permission of Prof. U. Benjamin Kaupp.]]    &lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;Soluble proteins&#039;&#039;&#039;&lt;br /&gt;
These proteins which are concentrated in the sensillar lymph, solubilize and carry the volatile molecules to the receptor. &lt;br /&gt;
There are two main known types of soluble proteins that are involved in arthropods&#039; chemical communication: &#039;&#039;&#039;[http://proteopedia.org/w/Odorant_binding_protein Odorant binding proteins –OBPs]&#039;&#039;&#039;,&#039;&#039;&#039;[http://proteopedia.org/wiki/index.php/Chemosensory_protein Chemosensory protein-CSP]&#039;&#039;&#039; ([[fig 5]]). Though bearing the same name and participating in the same function, OBP of vertebrates and arthropods are two distinct families with completely different structure and origin&amp;lt;ref name=&amp;quot;pelosi&amp;quot; /&amp;gt;. Arthropods&#039; OBP are composed of alpha helices, while vertebrates&#039; OBP belong to the [http://en.wikipedia.org/wiki/Lipocalin Lipocalins] super family and have a beta-barrel structure (for structure comparison, see [[table 1]] and [[fig 5]]). Recently, another family of protein has been suggested to play a role in ant chemical communication, &#039;&#039;&#039;[https://www.wikigenes.org/e/gene/e/10577.html Niemann-Pick type C2 protein-NPC2]&#039;&#039;&#039; &amp;lt;ref name=&amp;quot;ishida&amp;quot;&amp;gt;DOI: 10.1073/pnas.1323928111&amp;lt;/ref&amp;gt;. &lt;br /&gt;
[[Image:Fig 3 soluble proteins.png|thumb|center|upright=3|Figure 5. (a) An example for vertebrate&#039;s OBP-a pig OBP, PDB:[[1e06]]; (b) An example for insect&#039;s OBP- &#039;&#039;Bombyx mori&#039;&#039; PBP, PDB:[[1dqe]]; (c) An example for insect&#039;s CSP-&#039;&#039;Mamestra brassicae&#039;&#039; CSP2 PDB:[[1n8u]]]]&lt;br /&gt;
[[Image:Soluble proteins table.png|thumb|center|upright=2|Table 1. Summation of the main structure properties of soluble proteins types]]&lt;br /&gt;
&lt;br /&gt;
==Types of Soluble proteins in arthropods== &lt;br /&gt;
&amp;lt;StructureSection load=&#039;1OOH&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;&#039;&#039;Mamestra brassicae&#039;&#039; CSP2 PDB:[[1n8u]]&#039; scene=&#039;&#039;&amp;gt;&lt;br /&gt;
In each protein the consereved &amp;lt;font color=#FF7E00&amp;gt;&amp;lt;b&amp;gt;&#039;&#039;&#039;cysteins&#039;&#039;&#039;&amp;lt;/b&amp;gt;&amp;lt;/font&amp;gt;and the &amp;lt;font color=#FDEE00&amp;gt;&amp;lt;b&amp;gt;&#039;&#039;&#039;disulfide bonds&#039;&#039;&#039;&amp;lt;/b&amp;gt;&amp;lt;/font&amp;gt; are color marked.&lt;br /&gt;
*&#039;&#039;&#039;OBP&#039;&#039;&#039;&lt;br /&gt;
This family was the first soluble protein discovered in the chemosensory system of arthropods. Its general strcuture is of alpha helices that are compactly tied by 3 disulfid bridges formed by 6 consereved cystein residues. &lt;br /&gt;
The male fly of &#039;&#039;Drosophila melanogaster&#039;&#039; produce the pheromone 11-cis vaccenyl acetate which mediates aggregation behavior of other flys of the same species&amp;lt;ref&amp;gt;doi:10.1523/JNEUROSCI.0876-06.2006&amp;lt;/ref&amp;gt;. The detection of the pheromone, was shown to be mediated by pheromone-induced conformational shifts in the PBP, &amp;lt;scene name=&#039;61/614066/Lush/1&#039;&amp;gt;LUSH&amp;lt;/scene&amp;gt;. In fact, the trigering of the neuron was possible in the absence of the pheromone itself&amp;lt;ref&amp;gt;doi: m10.1016/j.cell.2008.04.046&amp;lt;/ref&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;CSP&#039;&#039;&#039;&lt;br /&gt;
This protein family which was discovered after the OBP family, though having a similar alpha helice structure, is shorter and bear only 4 conserved cysteins that forms 2 disulfide bridges. &lt;br /&gt;
In the moth &#039;&#039;Mamestra brassicae&#039;&#039; a member of the CSP family, CSPMbraA6, was isolated from the moth antennae. It was shown that the protein can bind &amp;lt;scene name=&#039;61/614066/Mamestra_brassicae_csp/1&#039;&amp;gt;three molecules of its ligand, 12-bromo-dodecanol&amp;lt;/scene&amp;gt; at the same time&amp;lt;ref&amp;gt;doi: 10.1073/pnas.0836654100&amp;lt;/ref&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;NPC2&#039;&#039;&#039;&lt;br /&gt;
Recently, a new family of proteins have been suggested to play a role as a soluble protein. Until now NPC2 proteins were known to carry lipids and cholesterol molecules in the cells&amp;lt;ref&amp;gt;doi: 10.1016/j.bbalip.2004.08.007&amp;lt;/ref&amp;gt;, yet a member of this family was isolated from the antennae of the ant &#039;&#039;Camponatus japonicus&#039;&#039;&amp;lt;ref name=&amp;quot;ishida&amp;quot; /&amp;gt;&amp;lt;ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
== See also == &lt;br /&gt;
*[[Odorant_binding_protein_3D_structures]]&lt;br /&gt;
*For comprehensive explanation about quorum sensing please turn to Fuqua et al. (2001) &amp;lt;ref&amp;gt;DOI: 10.1146/annurev.genet.35.102401.090913 &amp;lt;/ref&amp;gt;.&lt;br /&gt;
*for more information about the protein-ligand interaction, you may go to [[Odorant binding protein]].&lt;br /&gt;
== References ==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Nurit Eliash</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Chemical_communication_in_arthropods&amp;diff=2368859</id>
		<title>Chemical communication in arthropods</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Chemical_communication_in_arthropods&amp;diff=2368859"/>
		<updated>2015-01-28T13:49:09Z</updated>

		<summary type="html">&lt;p&gt;Nurit Eliash: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;[[Image:Sensilla.png|thumb|upright=1.5|Figure 1: Vertebrate (a), and insect (b) sensilla. Figure 1 from Kaupp (2010), used with permission of Prof. U. Benjamin Kaupp.]] &lt;br /&gt;
[[Image:Signal trunsdution - Sanchez 2009.jpg|thumb|right|upright=2|Figure 2.(a) Schematic representation of the general structure of an insect olfactory hair; (b) The first molecular steps of the insect chemosensory signaling transduction pathway. Figure 1 from Sánchez-Gracia et al.(2009)&amp;lt;ref&amp;gt;doi: 10.1038/hdy.2009.55&amp;lt;/ref&amp;gt;, used with permission of Prof. Sa´nchez-Gracia.]]&lt;br /&gt;
 [[Image:Vieira and Rozas 2011 fig7.JPG|thumb|upright=1.5|Figure 3. The evolution of the Chemosensory System. Blue boxes represent the aquatic lifestyle. Right: Presence or absence of the chemosensory gene families in extant species. Branch lengths are not to scale. Figure 7 from Vieira and Rozas (2011), used with permission of Prof Julio Rozas &amp;lt;ref name=&amp;quot;Vieira and Rozas&amp;quot;&amp;gt;DOI: 10.1093/gbe/evr033&amp;lt;/ref&amp;gt;]] &lt;br /&gt;
&lt;br /&gt;
==The molecular basis of chemical communication==&lt;br /&gt;
The sense of smell, [http://en.wikipedia.org/wiki/Olfaction Olfaction] is a primary sense in nature. It plays a significant role in behaviors which are crucial for the organism survival: food searching, host and mating selection, and avoiding predators and pathogens &amp;lt;ref name=&amp;quot;kaupp&amp;quot;&amp;gt;DOI: 10.1038/nrn2789&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
In both [http://en.wikipedia.org/wiki/Arthropod arthropods] and [http://en.wikipedia.org/wiki/Vertebrate vertebrates] the detection of volatiles is completed by a complicated process which is mediated by soluble as well as transmembrane proteins &amp;lt;ref name=&amp;quot;pelosi&amp;quot;&amp;gt;DOI: 10.3389/fphys.2014.00320&amp;lt;/ref&amp;gt;.&lt;br /&gt;
It should be mentioned that the detection of [http://en.wikipedia.org/wiki/Pheromone pheromones] is also vital to microorganisms, as it regulates gene expression in what is termed [http://en.wikipedia.org/wiki/Quorum_sensing “quorum sensing”].  &lt;br /&gt;
In arthropods, most of what is known on chemosensory communication is based on insects&#039; research. The process begins when a volatile (mostly a small [http://en.wikipedia.org/wiki/Hydrophobe hydrophobic] molecule) enters the chemosensilla lymph of an insect, or the mucus of a vertebrate in the nasal cavity ([[fig 1]]). Both mediums are abundant in soluble proteins which binds to the hydrophobic molecules, solubilizes and carries it to the [http://en.wikipedia.org/wiki/Chemoreceptor chemoreceptors] on the dendritic membrane of the olfactory receptor neuron &amp;lt;ref name=&amp;quot;kaupp&amp;quot; /&amp;gt;&amp;lt;ref&amp;gt;Vogt RG (2005) Molecular basis of pheromone detection in insects. Comprehensive Insect Physiology, Biochemistry, Pharmacology and Molecular Biology, eds Gilbert LI, Iatro K, Gills S (Elsevier, London), Vol 3, pp 753–804.&amp;lt;/ref&amp;gt;.The chemical signal is there by translated into an electrical signal which can cause an immediate response, or further elaborate with other signals in the insect&#039;s mushroom bodies or vertebrate&#039;s brain ([[fig 2]])&amp;lt;ref&amp;gt;doi: 10.3389/fncel.2012.00048&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;doi: 10.1146/annurev-ento-120811-153635&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== What is the differences and similarities between Arthropods and Vertebrates? ==&lt;br /&gt;
 &lt;br /&gt;
Though functionally similar, receptors as well as soluble proteins are structurally and genetically unrelated in insects and vertebrates (see [[fig 3]] for the putative evolution of proteins involved in chemosensory system).   &lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;Receptors&#039;&#039;&#039; &lt;br /&gt;
Most of the vertebrates&#039; chemosensory receptors are metabotropic and belong to the [[G protein-coupled receptors]]. Once the volatile binds to the receptor it initiates intracellular signal transduction &amp;lt;ref&amp;gt;doi: 10.1016/S0167-4838(00)00167-9&amp;lt;/ref&amp;gt;. On the other hand, arthropods&#039; and insects&#039; chemoreceptors are composed of two subunits: [http://en.wikipedia.org/wiki/Olfactory_receptor Receptor] and [http://en.wikipedia.org/wiki/Co-receptor Co-receptor] that upon interaction with the volatile or the complex of volatile-soluble protein, are activated and serve as an [http://en.wikipedia.org/wiki/Ion_channel ion channel]. The opening of the ion channel changes the [http://en.wikipedia.org/wiki/Membrane_potential membrane potential], and starts the inter-cellular signal transduction&amp;lt;ref&amp;gt;Vogt RG (2005) Molecular basis of pheromone detection in insects. Comprehensive Insect Physiology, Biochemistry, Pharmacology and Molecular Biology, eds Gilbert LI, Iatro K, Gills S (Elsevier, London), Vol 3, pp 753–804.&amp;lt;/ref&amp;gt;.[[Image:Chemoreceptors-insects.jpg|thumb|center|upright=2.5|Figure 4: Types of insect receptors. Figure 1 from Kaupp (2010), used with permission of Prof. U. Benjamin Kaupp.]]    &lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;Soluble proteins&#039;&#039;&#039;&lt;br /&gt;
These proteins which are concentrated in the sensillar lymph, solubilize and carry the volatile molecules to the receptor. &lt;br /&gt;
There are two main known types of soluble proteins that are involved in arthropods&#039; chemical communication: &#039;&#039;&#039;[http://proteopedia.org/w/Odorant_binding_protein Odorant binding proteins –OBPs]&#039;&#039;&#039;,&#039;&#039;&#039;[http://proteopedia.org/wiki/index.php/Chemosensory_protein Chemosensory protein-CSP]&#039;&#039;&#039; ([[fig 5]]). Though bearing the same name and participating in the same function, OBP of vertebrates and arthropods are two distinct families with completely different structure and origin&amp;lt;ref name=&amp;quot;pelosi&amp;quot; /&amp;gt;. Arthropods&#039; OBP are composed of alpha helices, while vertebrates&#039; OBP belong to the [http://en.wikipedia.org/wiki/Lipocalin Lipocalins] super family and have a beta-barrel structure (for structure comparison, see [[table 1]] and [[fig 5]]). Recently, another family of protein has been suggested to play a role in ant chemical communication, &#039;&#039;&#039;[https://www.wikigenes.org/e/gene/e/10577.html Niemann-Pick type C2 protein-NPC2]&#039;&#039;&#039; &amp;lt;ref name=&amp;quot;ishida&amp;quot;&amp;gt;DOI: 10.1073/pnas.1323928111&amp;lt;/ref&amp;gt;. &lt;br /&gt;
[[Image:Fig 3 soluble proteins.png|thumb|center|upright=3|Figure 5. (a) An example for vertebrate&#039;s OBP-a pig OBP, PDB:[[1e06]]; (b) An example for insect&#039;s OBP- &#039;&#039;Bombyx mori&#039;&#039; PBP, PDB:[[1dqe]]; (c) An example for insect&#039;s CSP-&#039;&#039;Mamestra brassicae&#039;&#039; CSP2 PDB:[[1n8u]]]]&lt;br /&gt;
[[Image:Soluble proteins table.png|thumb|center|upright=2|Table 1. Summation of the main structure properties of soluble proteins types]]&lt;br /&gt;
&lt;br /&gt;
==Types of Soluble proteins in arthropods== &lt;br /&gt;
&amp;lt;StructureSection load=&#039;1OOH&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;&#039;&#039;Mamestra brassicae&#039;&#039; CSP2 PDB:[[1n8u]]&#039; scene=&#039;&#039;&amp;gt;&lt;br /&gt;
In each protein the consereved &amp;lt;font color=#FF7E00&amp;gt;&amp;lt;b&amp;gt;&#039;&#039;&#039;cysteins&#039;&#039;&#039;&amp;lt;/b&amp;gt;&amp;lt;/font&amp;gt;and the &amp;lt;font color=#FDEE00&amp;gt;&amp;lt;b&amp;gt;&#039;&#039;&#039;disulfide bonds&#039;&#039;&#039;&amp;lt;/b&amp;gt;&amp;lt;/font&amp;gt; are color marked.&lt;br /&gt;
*&#039;&#039;&#039;OBP&#039;&#039;&#039;&lt;br /&gt;
This family was the first soluble protein discovered in the chemosensory system of arthropods. Its general strcuture is of alpha helices that are compactly tied by 3 disulfid bridges formed by 6 consereved cystein residues. &lt;br /&gt;
The male fly of &#039;&#039;Drosophila melanogaster&#039;&#039; produce the pheromone 11-cis vaccenyl acetate which mediates aggregation behavior of other flys of the same species&amp;lt;ref&amp;gt;doi:10.1523/JNEUROSCI.0876-06.2006&amp;lt;/ref&amp;gt;. The detection of the pheromone, was shown to be mediated by pheromone-induced conformational shifts in the PBP, &amp;lt;scene name=&#039;61/614066/Lush/1&#039;&amp;gt;LUSH&amp;lt;/scene&amp;gt;. In fact, the trigering of the neuron was possible in the absence of the pheromone itself&amp;lt;ref&amp;gt;doi: m10.1016/j.cell.2008.04.046&amp;lt;/ref&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;CSP&#039;&#039;&#039;&lt;br /&gt;
This protein family which was discovered after the OBP family, though having a similar alpha helice structure, is shorter and bear only 4 conserved cysteins that forms 2 disulfide bridges. &lt;br /&gt;
In the moth &#039;&#039;Mamestra brassicae&#039;&#039; a member of the CSP family, CSPMbraA6, was isolated from the moth antennae. It was shown that the protein can bind &amp;lt;scene name=&#039;61/614066/Mamestra_brassicae_csp/1&#039;&amp;gt;three molecules of its ligand, 12-bromo-dodecanol&amp;lt;/scene&amp;gt; at the same time&amp;lt;ref&amp;gt;doi: 10.1073/pnas.0836654100&amp;lt;/ref&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;NPC2&#039;&#039;&#039;&lt;br /&gt;
Recently, a new family of proteins have been suggested to play a role as a soluble protein. Until now NPC2 proteins were known to carry lipids and cholesterol molecules in the cells&amp;lt;ref&amp;gt;doi: 10.1016/j.bbalip.2004.08.007&amp;lt;/ref&amp;gt;, yet a member of this family was isolated from the antennae of the ant &#039;&#039;Camponatus japonicus&#039;&#039;&amp;lt;ref name=&amp;quot;ishida&amp;quot; /&amp;gt;&amp;lt;ref&amp;gt;. This protein has a beta-barrel shape and &amp;lt;scene name=&#039;61/614066/Npc2_cysteins/2&#039;&amp;gt;6 cysteins forming 3 disulfide bonds&amp;lt;/scene&amp;gt; (similar to classical vertebrates OBP). Another conserved feature is the &amp;lt;scene name=&#039;61/614066/Npc2_cysteins/1&#039;&amp;gt;6 conserved hydrophobic residues at the gate of the cavity&amp;lt;/scene&amp;gt;, supposedly attracting the hydrophobic ligand to the cavity&amp;lt;ref&amp;gt;doi: 10.1074/jbc.M703848200.STRUCTURAL&amp;lt;/ref&amp;gt;. This first finding could explain the small number of known soluble proteins in some insects and other arthropods, relativity to their ability to sense large number of volatiles.    &lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== See also == &lt;br /&gt;
*[[Odorant_binding_protein_3D_structures]]&lt;br /&gt;
*For comprehensive explanation about quorum sensing please turn to Fuqua et al. (2001) &amp;lt;ref&amp;gt;DOI: 10.1146/annurev.genet.35.102401.090913 &amp;lt;/ref&amp;gt;.&lt;br /&gt;
*for more information about the protein-ligand interaction, you may go to [[Odorant binding protein]].&lt;br /&gt;
== References ==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Nurit Eliash</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Odorant_binding_protein&amp;diff=2368704</id>
		<title>Odorant binding protein</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Odorant_binding_protein&amp;diff=2368704"/>
		<updated>2015-01-28T12:16:27Z</updated>

		<summary type="html">&lt;p&gt;Nurit Eliash: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;==Introduction==&lt;br /&gt;
Odorant-binding protein (OBP) are soluble proteins which involve in the processes of odorant detection in the olfactory sensilla &amp;lt;ref name=&amp;quot;Pelosi 2014&amp;quot;&amp;gt;doi: 10.3389/fphys.2014.00320&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Though functionally same, vertebrates and insects OBP have different origin and structure.&lt;br /&gt;
OBPs are important for insect olfaction. For instance, OBP76a (LUSH) in the fly [http://en.wikipedia.org/wiki/Drosophila_melanogaster &#039;&#039;Drosophila melanogaster&#039;&#039;] is required for the detection of the pheromone vaccenyl acetate &amp;lt;ref name=&amp;quot;Xu 2005&amp;quot;&amp;gt;doi: 10.1016/j.neuron.2004.12.031&amp;lt;/ref&amp;gt; and has been proven to adopt a conformation that activates the odorant receptor &amp;lt;ref name=&amp;quot;Laughlin 2008&amp;quot;&amp;gt;doi: 10.1016/j.cell.2008.04.046&amp;lt;/ref&amp;gt;. &lt;br /&gt;
[[Image:Bombyx mori.jpg|thumb|upright=1|&#039;&#039;Bombyx mori&#039;&#039;, the silk moth, picture by [https://www.flickr.com/photos/depredator007/2522038240/ Fernando Cuenca]]]&lt;br /&gt;
[[Image:Bombykol.png|thumb|upright=1|Bombykol, a sex pheromone of &#039;&#039;Bombyx mori&#039;&#039;, from [http://pubchem.ncbi.nlm.nih.gov/compound/Bombykol#section=Top PubChem]]]&lt;br /&gt;
&lt;br /&gt;
==OBP in insects==&lt;br /&gt;
==== OBP Function ====&lt;br /&gt;
Despite five decades of intensive research, the exact roles of OBP and the mechanism by which the odorant receptor (OR) is activated are still in dispute &amp;lt;ref name=&amp;quot;Leal&amp;quot;&amp;gt;DOI: 10.1146/annurev-ento-120811-153635&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI: 10.1007/s00359-009-0461-4&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;A few functions have been suggested for OBP:&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
1. Solubelizing the odorant molecule and its transportation in the sensillar lymph.&lt;br /&gt;
&lt;br /&gt;
2. Protecting the odorant molecule from the odorant degrading enzymes, in the sensillar lymph.&lt;br /&gt;
&lt;br /&gt;
3. Activating of the odorant receptor on the dendrite membrane, by the odorant-OBP complex.&lt;br /&gt;
&lt;br /&gt;
4. Mediating the deactivation of the odorant molecule after the activation of the receptor.&lt;br /&gt;
&lt;br /&gt;
5. An organic anion (the protein has 9 negative charges).&lt;br /&gt;
&lt;br /&gt;
Of all, the first role of OBP as an odorant solubilizer and carrier is generally accepted.&lt;br /&gt;
&lt;br /&gt;
In order to explain the structure and function of these fascinating proteins, this page will further focus on a particular OBP - the well investigated &#039;&#039;[http://en.wikipedia.org/wiki/Bombyx_mori Bombyx mori]&#039;&#039; PBP: [http://www.uniprot.org/uniprot/P34174 BmorPBP].&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
====&#039;&#039;Bombyx mori&#039;&#039; BmorPBP (lets talk about sex..)====&lt;br /&gt;
&amp;lt;StructureSection load=&#039;1ls8&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;&#039;&#039;Bombyx mori&#039;&#039; PBP -BmorPBP scene=&#039;&#039;&amp;gt;&lt;br /&gt;
Pheromone binding proteins (PBPs) are specialized members of the insect odorant-binding protein (OBP) super-family.   &lt;br /&gt;
The main purpose in the dult moth&#039;s short life is reproduction. In fact, the male and female moth invest all of theire energy and resourses hoping to reach to the ultimate goal-  mating. This long journey begins when the female moth releases a sex pheromone, usualy in specific hours in the night &amp;lt;ref&amp;gt;doi: 10.1007/BF01946910&amp;lt;/ref&amp;gt;. &lt;br /&gt;
BmorPBP was first identified in the &#039;&#039;B. mori&#039;&#039; male antennae by Krieger et al. in 1996 &amp;lt;ref&amp;gt;doi: 10.1016/0965-1748(95)00096-8&amp;lt;/ref&amp;gt;, as the PBP of the first sex pheromone discovered ((E,Z)-10,12-hexadecadienol, or [http://en.wikipedia.org/wiki/Bombykol Bombykol]). The male moth needs to detect minute amount of the pheromone in the air, while following turbulent wind-born pheromone trail and response fast (experimental evidence shows a response time of 0.5 seconds&amp;lt;ref&amp;gt;doi: 10.1038/293161a0&amp;lt;/ref&amp;gt;). &lt;br /&gt;
&lt;br /&gt;
====BmorPBP structure and function====&lt;br /&gt;
The protein has 164 amino acids that forms 6-7 alpha helices (depends on the protein conformation). Three &amp;lt;font color=#FFEF00&amp;gt;&amp;lt;b&amp;gt;disulfide bonds&amp;lt;/b&amp;gt;&amp;lt;/font&amp;gt; formed by &amp;lt;scene name=&#039;68/683383/Cysteins6/1&#039;&amp;gt;6 cystein &amp;lt;/scene&amp;gt; residues tied four helices, and form the compact and robust structure of the protein. As expected from a soluble protein, its surface is covered with &amp;lt;scene name=&#039;68/683383/Charged_resid/1&#039;&amp;gt;charged residues&amp;lt;/scene&amp;gt;, which allows it to make interactions with the water molecule and solubilize in the sensillar lymph.&lt;br /&gt;
&lt;br /&gt;
====BmorPBP - ligand binding====&lt;br /&gt;
The protein natural ligand is the moth pheromone &amp;lt;scene name=&#039;68/683383/Bombykol_ligand_in_2p71/1&#039;&amp;gt;Bombykol&amp;lt;/scene&amp;gt;. However, it was demonstrated that other molecules can also bound to the protein cavity &amp;lt;ref&amp;gt;doi: 10.1016/j.str.2007.07.013&amp;lt;/ref&amp;gt;. The interaction with the ligand is being made by 4 alpha helices 1, 4, 5 and 6 in the core of the protein, which form the binding cavity &amp;lt;ref&amp;gt;doi: 10.1016/S1074-5521(00)00078-8&amp;lt;/ref&amp;gt;.    &lt;br /&gt;
Inside the binding cavity, &amp;lt;scene name=&#039;68/683383/Residues_interacting/1&#039;&amp;gt;non-charged residues&amp;lt;/scene&amp;gt; are interacting with the pheromone, mainly by van der waals bounds. Out of those residues, some are conserved across OBP of lepidopteran (&amp;lt;font color=#8DB600&amp;gt;&amp;lt;b&amp;gt;in green&amp;lt;/b&amp;gt;&amp;lt;/font&amp;gt;), and the rest are conserved in lepidopteran PBP only (&amp;lt;font color=#318CE7&amp;gt;&amp;lt;b&amp;gt;in light blue&amp;lt;/b&amp;gt;&amp;lt;/font&amp;gt;).   &lt;br /&gt;
In addition, the hydroxyl group of the pheromone bombykol forms a &amp;lt;scene name=&#039;68/683383/Ser56_interaction_with_oxg/2&#039;&amp;gt;hydrogen bond with the sidechain of Ser56&amp;lt;/scene&amp;gt;, Ser56 in red, oxygens are in purple (O–O distance of 2.8 Å).  &lt;br /&gt;
&lt;br /&gt;
====Protein conformations====&lt;br /&gt;
[[Image:A -B forms without ligand.png|thumb|upright=2|The A and B forms without ligand (PDB IDs: [[1gm0]] and [[1ls8]]).]]&lt;br /&gt;
[[Image:A to b with ligand.png|thumb|upright=2|The A and B forms with ligand (PDB IDs: [[1gm0]] and [[1ls8]]).]]&lt;br /&gt;
&lt;br /&gt;
BmorPBP has two conformations: The &#039;&#039;&#039;&amp;quot;closed form&amp;quot; (A)&#039;&#039;&#039; and the &#039;&#039;&amp;quot;open form&amp;quot; (B)&#039;&#039;&amp;lt;ref&amp;gt;DOI: 10.1074/jbc.274.43.30950&amp;lt;/ref&amp;gt;. The bombykol and the alpha-helix loacated in the c-terminus of the protein compete for the binding site: when the c-terminus is inside the binding cavity it get&#039;s an alpha helix shape, and the protien is in its &amp;quot;close form&amp;quot; (B), whereas in the &amp;quot;open form&amp;quot; (A) the c-terminus is outside of the protein and has no defined secondary structure. Binding experiments have shown that the B-form binds 15 times higher than the A-form &amp;lt;ref&amp;gt;doi: 10.1073/pnas.0501447102&amp;lt;/ref&amp;gt;, therefore considered to be the carrier of the pheromone. The complex of the A-form and the pheromone, is then considered the form that activates the receptor.         &lt;br /&gt;
&lt;br /&gt;
The &amp;lt;scene name=&#039;68/683383/1dqe-1gm0/4&#039;&amp;gt;transition between the two conformation&amp;lt;/scene&amp;gt; is both pH and ligand dependent &amp;lt;ref&amp;gt;doi: 10.1073?pnas.251532998&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI: 10.1016/j.bbrc.2005.07.176&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;doi: 10.1073/pnas.1317706110&amp;lt;/ref&amp;gt;. In short, the B-form (c-terminus outside the cavity) occurs only at neutral pH and in the presence of the ligand. The A-form (c-terminus inside the cavity) occurs at both low and neutral pH, yet at the latter only in the absence of ligand. Therefore, in neutral pH when the ligand is binding to the protein in its A-form, the complex formation causes a change in conformation to the B-form. However, both A and B forms are equally distributed in the lymph.&lt;br /&gt;
{{Button Toggle AnimationOnPause}}&lt;br /&gt;
   &lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Conformation transition mechanism:&#039;&#039;&#039;&lt;br /&gt;
The c-terminus of the protein bears mostly &amp;lt;scene name=&#039;68/683383/Hydrophobic_resid/1&#039;&amp;gt;non-polar amino acids&amp;lt;/scene&amp;gt;. Yet on the surface of the helix there are three exceptional amino acids: Asp-132, Glu-137, and Glu-141, which are conserved in moth PBP &amp;lt;ref&amp;gt;doi: 10.1016/j.bbrc.2005.07.176&amp;lt;/ref&amp;gt;. Of these, residues &amp;lt;scene name=&#039;68/683383/Asp132/1&#039;&amp;gt;Asp-132&amp;lt;/scene&amp;gt; (and Glu-141, if present) triggers the formation of the alpha-helix upon protonation at low pH. This causes the transition from the &amp;lt;scene name=&#039;68/683383/B_form_with_ligand/1&#039;&amp;gt;&amp;quot;A form&amp;quot;&amp;lt;/scene&amp;gt;, to the &amp;lt;scene name=&#039;68/683383/A_form_with_ligand/1&#039;&amp;gt;&amp;quot;B form&amp;quot;&amp;lt;/scene&amp;gt; and the ejaculation of the ligand from the binding pocket, which is replaced by the formatted alpha helix&amp;lt;ref&amp;gt;doi: 10.1016/j.bbrc&amp;lt;/ref&amp;gt;. &lt;br /&gt;
Studies on other Lepidopterans that show a similar pH dependent conformation suggests that this model is a general model moth PBP&amp;lt;ref name=&amp;quot;Leal&amp;quot; /&amp;gt;. Nonetheless, the enormous diversity among insects is not allowing us to assume this model is true for all insects&#039; OBPs.&lt;br /&gt;
[[Image:N model extended.png|thumb|upright=2.5|Figure 1. The events prior the neuron excitation, following the &amp;quot;N model&amp;quot; suggested by Kaissling (2009)&amp;lt;ref name=&amp;quot;kaissling&amp;quot;&amp;gt;DOI: 10.1007/s00359-009-0461-4&amp;lt;/ref&amp;gt; The pheromone enters the sensillar lymph through a pore in cuticle. The pheromone can then be degraded by the ODE (1) -or- bind to the A and B protein forms (2a and 2b, respectively).  When the complex arrives at the low pH near the membrane, the transition is in favor of the A-form, (3) in which the -c-terminus is forming an alpha helix inside the binding cavity, pushing out the pheromone. The activation of the complex of odorant receptor and coreceptor (OR:OR-CO), is induced by ether the complex of pheromone-PBP, or by the pheromone alone (5, two options). The B-form can also act as a scavenger, as it mediates the deactivation of the pheromone (6) and releases it to the ODE (6)]] &lt;br /&gt;
====Receptor activation====&lt;br /&gt;
Two theories have been proposed for the activation of the odorant receptors located on the dendrtirte membrane. One theory suggests that the pheromone-PBP complex is needed for the receptor activation, while the second theory argue that the pheromone itself is sufficient for the activation of the receptor.   &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;Activation by the pheromone alone&#039;&#039;&#039; &lt;br /&gt;
This model is supported by the pH dependent conformation transition, that is described above. The bulk of the sensillar lymph is in neutral pH (6.5-7), while environment near the dendrite membrane bears a low pH (4.5), due to the negative charges on the surface of the membrane &amp;lt;ref&amp;gt;DOI: 10.1016/0040-8166(84)90004-1&amp;lt;/ref&amp;gt;, which cause the accumulation of positively charged kations near the membrane surface (20-50 nm)&amp;lt;ref name=&amp;quot;kaissling&amp;quot; /&amp;gt;&amp;lt;ref&amp;gt;. According to this model, the pheromone is entering the sensillar lymph through a pore in the cuticle, then it can be either degraded by odorant degrading enzymes (ODE) or bind to a PBP (of both forms). Once the complex is arriving to the low pH environment near the dendrite membrane the PBP will shift to the A-form, thereby ejaculating the ligand from the binding pocket, allowing it to activate the OR:CO-OR complex and the cellular signal transduction begins.      &lt;br /&gt;
 &lt;br /&gt;
*&#039;&#039;&#039;Activation by the complex pheromone-PBP&#039;&#039;&#039;&lt;br /&gt;
An alternative mode of action was proposed for the receptor activation in &#039;&#039;Drosophila melanogaster&#039;&#039;, where it was found that the complex of pheromone-PBP is required for the activity of pheromone-sensitive neurons &amp;lt;ref&amp;gt;DOI: 10.1016/j.neuron.2004.12.031&amp;lt;ref/&amp;gt;&amp;lt;ref&amp;gt;doi: 10.1016/j.cell.2008.04.046&amp;lt;ref/&amp;gt; &lt;br /&gt;
&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== See also == &lt;br /&gt;
*[[Odorant_binding_protein_3D_structures]]&lt;br /&gt;
*[[Chemical communication in arthropods]]&lt;br /&gt;
*[[Pheromone binding protein]]&lt;br /&gt;
== References ==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Nurit Eliash</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Odorant_binding_protein&amp;diff=2368702</id>
		<title>Odorant binding protein</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Odorant_binding_protein&amp;diff=2368702"/>
		<updated>2015-01-28T12:14:40Z</updated>

		<summary type="html">&lt;p&gt;Nurit Eliash: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;==Introduction==&lt;br /&gt;
Odorant-binding protein (OBP) are soluble proteins which involve in the processes of odorant detection in the olfactory sensilla &amp;lt;ref name=&amp;quot;Pelosi 2014&amp;quot;&amp;gt;doi: 10.3389/fphys.2014.00320&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Though functionally same, vertebrates and insects OBP have different origin and structure.&lt;br /&gt;
OBPs are important for insect olfaction. For instance, OBP76a (LUSH) in the fly [http://en.wikipedia.org/wiki/Drosophila_melanogaster &#039;&#039;Drosophila melanogaster&#039;&#039;] is required for the detection of the pheromone vaccenyl acetate &amp;lt;ref name=&amp;quot;Xu 2005&amp;quot;&amp;gt;doi: 10.1016/j.neuron.2004.12.031&amp;lt;/ref&amp;gt; and has been proven to adopt a conformation that activates the odorant receptor &amp;lt;ref name=&amp;quot;Laughlin 2008&amp;quot;&amp;gt;doi: 10.1016/j.cell.2008.04.046&amp;lt;/ref&amp;gt;. &lt;br /&gt;
[[Image:Bombyx mori.jpg|thumb|upright=1|&#039;&#039;Bombyx mori&#039;&#039;, the silk moth, picture by [https://www.flickr.com/photos/depredator007/2522038240/ Fernando Cuenca]]]&lt;br /&gt;
[[Image:Bombykol.png|thumb|upright=1|Bombykol, a sex pheromone of &#039;&#039;Bombyx mori&#039;&#039;, from [http://pubchem.ncbi.nlm.nih.gov/compound/Bombykol#section=Top PubChem]]]&lt;br /&gt;
&lt;br /&gt;
==OBP in insects==&lt;br /&gt;
==== OBP Function ====&lt;br /&gt;
Despite five decades of intensive research, the exact roles of OBP and the mechanism by which the odorant receptor (OR) is activated are still in dispute &amp;lt;ref name=&amp;quot;Leal&amp;quot;&amp;gt;DOI: 10.1146/annurev-ento-120811-153635&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI: 10.1007/s00359-009-0461-4&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;A few functions have been suggested for OBP:&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
1. Solubelizing the odorant molecule and its transportation in the sensillar lymph.&lt;br /&gt;
&lt;br /&gt;
2. Protecting the odorant molecule from the odorant degrading enzymes, in the sensillar lymph.&lt;br /&gt;
&lt;br /&gt;
3. Activating of the odorant receptor on the dendrite membrane, by the odorant-OBP complex.&lt;br /&gt;
&lt;br /&gt;
4. Mediating the deactivation of the odorant molecule after the activation of the receptor.&lt;br /&gt;
&lt;br /&gt;
5. An organic anion (the protein has 9 negative charges).&lt;br /&gt;
&lt;br /&gt;
Of all, the first role of OBP as an odorant solubilizer and carrier is generally accepted.&lt;br /&gt;
&lt;br /&gt;
In order to explain the structure and function of these fascinating proteins, this page will further focus on a particular OBP - the well investigated &#039;&#039;[http://en.wikipedia.org/wiki/Bombyx_mori Bombyx mori]&#039;&#039; PBP: [http://www.uniprot.org/uniprot/P34174 BmorPBP].&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
====&#039;&#039;Bombyx mori&#039;&#039; BmorPBP (lets talk about sex..)====&lt;br /&gt;
&amp;lt;StructureSection load=&#039;1ls8&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;&#039;&#039;Bombyx mori&#039;&#039; PBP -BmorPBP scene=&#039;&#039;&amp;gt;&lt;br /&gt;
Pheromone binding proteins (PBPs) are specialized members of the insect odorant-binding protein (OBP) super-family.   &lt;br /&gt;
The main purpose in the dult moth&#039;s short life is reproduction. In fact, the male and female moth invest all of theire energy and resourses hoping to reach to the ultimate goal-  mating. This long journey begins when the female moth releases a sex pheromone, usualy in specific hours in the night &amp;lt;ref&amp;gt;doi: 10.1007/BF01946910&amp;lt;/ref&amp;gt;. &lt;br /&gt;
BmorPBP was first identified in the &#039;&#039;B. mori&#039;&#039; male antennae by Krieger et al. in 1996 &amp;lt;ref&amp;gt;doi: 10.1016/0965-1748(95)00096-8&amp;lt;/ref&amp;gt;, as the PBP of the first sex pheromone discovered ((E,Z)-10,12-hexadecadienol, or [http://en.wikipedia.org/wiki/Bombykol Bombykol]). The male moth needs to detect minute amount of the pheromone in the air, while following turbulent wind-born pheromone trail and response fast (experimental evidence shows a response time of 0.5 seconds&amp;lt;ref&amp;gt;doi: 10.1038/293161a0&amp;lt;/ref&amp;gt;). &lt;br /&gt;
&lt;br /&gt;
====BmorPBP structure and function====&lt;br /&gt;
The protein has 164 amino acids that forms 6-7 alpha helices (depends on the protein conformation). Three &amp;lt;font color=#FFEF00&amp;gt;&amp;lt;b&amp;gt;disulfide bonds&amp;lt;/b&amp;gt;&amp;lt;/font&amp;gt; formed by &amp;lt;scene name=&#039;68/683383/Cysteins6/1&#039;&amp;gt;6 cystein &amp;lt;/scene&amp;gt; residues tied four helices, and form the compact and robust structure of the protein. As expected from a soluble protein, its surface is covered with &amp;lt;scene name=&#039;68/683383/Charged_resid/1&#039;&amp;gt;charged residues&amp;lt;/scene&amp;gt;, which allows it to make interactions with the water molecule and solubilize in the sensillar lymph.&lt;br /&gt;
&lt;br /&gt;
====BmorPBP - ligand binding====&lt;br /&gt;
The protein natural ligand is the moth pheromone &amp;lt;scene name=&#039;68/683383/Bombykol_ligand_in_2p71/1&#039;&amp;gt;Bombykol&amp;lt;/scene&amp;gt;. However, it was demonstrated that other molecules can also bound to the protein cavity &amp;lt;ref&amp;gt;doi: 10.1016/j.str.2007.07.013&amp;lt;/ref&amp;gt;. The interaction with the ligand is being made by 4 alpha helices 1, 4, 5 and 6 in the core of the protein, which form the binding cavity &amp;lt;ref&amp;gt;doi: 10.1016/S1074-5521(00)00078-8&amp;lt;/ref&amp;gt;.    &lt;br /&gt;
Inside the binding cavity, &amp;lt;scene name=&#039;68/683383/Residues_interacting/1&#039;&amp;gt;non-charged residues&amp;lt;/scene&amp;gt; are interacting with the pheromone, mainly by van der waals bounds. Out of those residues, some are conserved across OBP of lepidopteran (&amp;lt;font color=#8DB600&amp;gt;&amp;lt;b&amp;gt;in green&amp;lt;/b&amp;gt;&amp;lt;/font&amp;gt;), and the rest are conserved in lepidopteran PBP only (&amp;lt;font color=#318CE7&amp;gt;&amp;lt;b&amp;gt;in light blue&amp;lt;/b&amp;gt;&amp;lt;/font&amp;gt;).   &lt;br /&gt;
In addition, the hydroxyl group of the pheromone bombykol forms a &amp;lt;scene name=&#039;68/683383/Ser56_interaction_with_oxg/2&#039;&amp;gt;hydrogen bond with the sidechain of Ser56&amp;lt;/scene&amp;gt;, Ser56 in red, oxygens are in purple (O–O distance of 2.8 Å).  &lt;br /&gt;
&lt;br /&gt;
====Protein conformations====&lt;br /&gt;
[[Image:A -B forms without ligand.png|thumb|upright=2|The A and B forms without ligand (PDB IDs: [[1gm0]] and [[1ls8]]).]]&lt;br /&gt;
[[Image:A to b with ligand.png|thumb|upright=2|The A and B forms with ligand (PDB IDs: [[1gm0]] and [[1ls8]]).]]&lt;br /&gt;
&lt;br /&gt;
BmorPBP has two conformations: The &#039;&#039;&#039;&amp;quot;closed form&amp;quot; (A)&#039;&#039;&#039; and the &#039;&#039;&amp;quot;open form&amp;quot; (B)&#039;&#039;&amp;lt;ref&amp;gt;DOI: 10.1074/jbc.274.43.30950&amp;lt;/ref&amp;gt;. The bombykol and the alpha-helix loacated in the c-terminus of the protein compete for the binding site: when the c-terminus is inside the binding cavity it get&#039;s an alpha helix shape, and the protien is in its &amp;quot;close form&amp;quot; (B), whereas in the &amp;quot;open form&amp;quot; (A) the c-terminus is outside of the protein and has no defined secondary structure. Binding experiments have shown that the B-form binds 15 times higher than the A-form &amp;lt;ref&amp;gt;doi: 10.1073/pnas.0501447102&amp;lt;/ref&amp;gt;, therefore considered to be the carrier of the pheromone. The complex of the A-form and the pheromone, is then considered the form that activates the receptor.         &lt;br /&gt;
&lt;br /&gt;
The &amp;lt;scene name=&#039;68/683383/1dqe-1gm0/4&#039;&amp;gt;transition between the two conformation&amp;lt;/scene&amp;gt; is both pH and ligand dependent &amp;lt;ref&amp;gt;doi: 10.1073?pnas.251532998&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI: 10.1016/j.bbrc.2005.07.176&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;doi: 10.1073/pnas.1317706110&amp;lt;/ref&amp;gt;. In short, the B-form (c-terminus outside the cavity) occurs only at neutral pH and in the presence of the ligand. The A-form (c-terminus inside the cavity) occurs at both low and neutral pH, yet at the latter only in the absence of ligand. Therefore, in neutral pH when the ligand is binding to the protein in its A-form, the complex formation causes a change in conformation to the B-form. However, both A and B forms are equally distributed in the lymph.&lt;br /&gt;
{{Button Toggle AnimationOnPause}}&lt;br /&gt;
   &lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Conformation transition mechanism:&#039;&#039;&#039;&lt;br /&gt;
The c-terminus of the protein bears mostly &amp;lt;scene name=&#039;68/683383/Hydrophobic_resid/1&#039;&amp;gt;non-polar amino acids&amp;lt;/scene&amp;gt;. Yet on the surface of the helix there are three exceptional amino acids: Asp-132, Glu-137, and Glu-141, which are conserved in moth PBP &amp;lt;ref&amp;gt;doi: 10.1016/j.bbrc.2005.07.176&amp;lt;/ref&amp;gt;. Of these, residues &amp;lt;scene name=&#039;68/683383/Asp132/1&#039;&amp;gt;Asp-132&amp;lt;/scene&amp;gt; (and Glu-141, if present) triggers the formation of the alpha-helix upon protonation at low pH. This causes the transition from the &amp;lt;scene name=&#039;68/683383/B_form_with_ligand/1&#039;&amp;gt;&amp;quot;A form&amp;quot;&amp;lt;/scene&amp;gt;, to the &amp;lt;scene name=&#039;68/683383/A_form_with_ligand/1&#039;&amp;gt;&amp;quot;B form&amp;quot;&amp;lt;/scene&amp;gt; and the ejaculation of the ligand from the binding pocket, which is replaced by the formatted alpha helix&amp;lt;ref&amp;gt;doi: 10.1016/j.bbrc&amp;lt;/ref&amp;gt;. &lt;br /&gt;
Studies on other Lepidopterans that show a similar pH dependent conformation suggests that this model is a general model moth PBP&amp;lt;ref name=&amp;quot;Leal&amp;quot; /&amp;gt;. Nonetheless, the enormous diversity among insects is not allowing us to assume this model is true for all insects&#039; OBPs.&lt;br /&gt;
[[Image:N model extended.png|thumb|upright=2.5|Figure 1. The events prior the neuron excitation, following the &amp;quot;N model&amp;quot; suggested by Kaissling (2009)&amp;lt;ref name=&amp;quot;kaissling&amp;quot;&amp;gt;DOI: 10.1007/s00359-009-0461-4&amp;lt;/ref&amp;gt; The pheromone enters the sensillar lymph through a pore in cuticle. The pheromone can then be degraded by the ODE (1) -or- bind to the A and B protein forms (2a and 2b, respectively).  When the complex arrives at the low pH near the membrane, the transition is in favor of the A-form, (3) in which the -c-terminus is forming an alpha helix inside the binding cavity, pushing out the pheromone. The activation of the complex of odorant receptor and coreceptor (OR:OR-CO), is induced by ether the complex of pheromone-PBP, or by the pheromone alone (5, two options). The B-form can also act as a scavenger, as it mediates the deactivation of the pheromone (6) and releases it to the ODE (6)]] &lt;br /&gt;
====Receptor activation====&lt;br /&gt;
Two theories have been proposed for the activation of the odorant receptors located on the dendrtirte membrane. One theory suggests that the pheromone-PBP complex is needed for the receptor activation, while the second theory argue that the pheromone itself is sufficient for the activation of the receptor.   &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;Activation by the pheromone alone&#039;&#039;&#039; &lt;br /&gt;
This model is supported by the pH dependent conformation transition, that is described above. The bulk of the sensillar lymph is in neutral pH (6.5-7), while environment near the dendrite membrane bears a low pH (4.5), due to the negative charges on the surface of the membrane &amp;lt;ref&amp;gt;DOI: 10.1016/0040-8166(84)90004-1&amp;lt;/ref&amp;gt;, which cause the accumulation of positively charged kations near the membrane surface (20-50 nm)&amp;lt;ref name=&amp;quot;kaissling&amp;quot; /&amp;gt;&amp;lt;ref&amp;gt;. According to this model, the pheromone is entering the sensillar lymph through a pore in the cuticle, then it can be either degraded by odorant degrading enzymes (ODE) or bind to a PBP (of both forms). Once the complex is arriving to the low pH environment near the dendrite membrane the PBP will shift to the A-form, thereby ejaculating the ligand from the binding pocket, allowing it to activate the OR:CO-OR complex and the cellular signal transduction begins.      &lt;br /&gt;
 &lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;Activation by the complex pheromone-PBP&#039;&#039;&#039;&lt;br /&gt;
An alternative mode of action was proposed for the receptor activation in &#039;&#039;Drosophila melanogaster&#039;&#039;, where it was found that the complex of pheromone-PBP is required for the activity of pheromone-sensitive neurons &amp;lt;ref&amp;gt;DOI: 10.1016/j.neuron.2004.12.031&amp;lt;ref/&amp;gt;&amp;lt;ref&amp;gt;doi: 10.1016/j.cell.2008.04.046&amp;lt;ref/&amp;gt; &lt;br /&gt;
&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== See also == &lt;br /&gt;
*[[Odorant_binding_protein_3D_structures]]&lt;br /&gt;
*[[Chemical communication in arthropods]]&lt;br /&gt;
*[[Pheromone binding protein]]&lt;br /&gt;
== References ==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Nurit Eliash</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Odorant_binding_protein&amp;diff=2368699</id>
		<title>Odorant binding protein</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Odorant_binding_protein&amp;diff=2368699"/>
		<updated>2015-01-28T12:09:58Z</updated>

		<summary type="html">&lt;p&gt;Nurit Eliash: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;==Introduction==&lt;br /&gt;
Odorant-binding protein (OBP) are soluble proteins which involve in the processes of odorant detection in the olfactory sensilla &amp;lt;ref name=&amp;quot;Pelosi 2014&amp;quot;&amp;gt;doi: 10.3389/fphys.2014.00320&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Though functionally same, vertebrates and insects OBP have different origin and structure.&lt;br /&gt;
OBPs are important for insect olfaction. For instance, OBP76a (LUSH) in the fly [http://en.wikipedia.org/wiki/Drosophila_melanogaster &#039;&#039;Drosophila melanogaster&#039;&#039;] is required for the detection of the pheromone vaccenyl acetate &amp;lt;ref name=&amp;quot;Xu 2005&amp;quot;&amp;gt;doi: 10.1016/j.neuron.2004.12.031&amp;lt;/ref&amp;gt; and has been proven to adopt a conformation that activates the odorant receptor &amp;lt;ref name=&amp;quot;Laughlin 2008&amp;quot;&amp;gt;doi: 10.1016/j.cell.2008.04.046&amp;lt;/ref&amp;gt;. &lt;br /&gt;
[[Image:Bombyx mori.jpg|thumb|upright=1|&#039;&#039;Bombyx mori&#039;&#039;, the silk moth, picture by [https://www.flickr.com/photos/depredator007/2522038240/ Fernando Cuenca]]]&lt;br /&gt;
[[Image:Bombykol.png|thumb|upright=1|Bombykol, a sex pheromone of &#039;&#039;Bombyx mori&#039;&#039;, from [http://pubchem.ncbi.nlm.nih.gov/compound/Bombykol#section=Top PubChem]]]&lt;br /&gt;
&lt;br /&gt;
==OBP in insects==&lt;br /&gt;
==== OBP Function ====&lt;br /&gt;
Despite five decades of intensive research, the exact roles of OBP and the mechanism by which the odorant receptor (OR) is activated are still in dispute &amp;lt;ref name=&amp;quot;Leal&amp;quot;&amp;gt;DOI: 10.1146/annurev-ento-120811-153635&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI: 10.1007/s00359-009-0461-4&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;A few functions have been suggested for OBP:&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
1. Solubelizing the odorant molecule and its transportation in the sensillar lymph.&lt;br /&gt;
&lt;br /&gt;
2. Protecting the odorant molecule from the odorant degrading enzymes, in the sensillar lymph.&lt;br /&gt;
&lt;br /&gt;
3. Activating of the odorant receptor on the dendrite membrane, by the odorant-OBP complex.&lt;br /&gt;
&lt;br /&gt;
4. Mediating the deactivation of the odorant molecule after the activation of the receptor.&lt;br /&gt;
&lt;br /&gt;
5. An organic anion (the protein has 9 negative charges).&lt;br /&gt;
&lt;br /&gt;
Of all, the first role of OBP as an odorant solubilizer and carrier is generally accepted.&lt;br /&gt;
&lt;br /&gt;
In order to explain the structure and function of these fascinating proteins, this page will further focus on a particular OBP - the well investigated &#039;&#039;[http://en.wikipedia.org/wiki/Bombyx_mori Bombyx mori]&#039;&#039; PBP: [http://www.uniprot.org/uniprot/P34174 BmorPBP].&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
====&#039;&#039;Bombyx mori&#039;&#039; BmorPBP (lets talk about sex..)====&lt;br /&gt;
&amp;lt;StructureSection load=&#039;1ls8&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;&#039;&#039;Bombyx mori&#039;&#039; PBP -BmorPBP scene=&#039;&#039;&amp;gt;&lt;br /&gt;
Pheromone binding proteins (PBPs) are specialized members of the insect odorant-binding protein (OBP) super-family.   &lt;br /&gt;
The main purpose in the dult moth&#039;s short life is reproduction. In fact, the male and female moth invest all of theire energy and resourses hoping to reach to the ultimate goal-  mating. This long journey begins when the female moth releases a sex pheromone, usualy in specific hours in the night &amp;lt;ref&amp;gt;doi: 10.1007/BF01946910&amp;lt;/ref&amp;gt;. &lt;br /&gt;
BmorPBP was first identified in the &#039;&#039;B. mori&#039;&#039; male antennae by Krieger et al. in 1996 &amp;lt;ref&amp;gt;doi: 10.1016/0965-1748(95)00096-8&amp;lt;/ref&amp;gt;, as the PBP of the first sex pheromone discovered ((E,Z)-10,12-hexadecadienol, or [http://en.wikipedia.org/wiki/Bombykol Bombykol]). The male moth needs to detect minute amount of the pheromone in the air, while following turbulent wind-born pheromone trail and response fast (experimental evidence shows a response time of 0.5 seconds&amp;lt;ref&amp;gt;doi: 10.1038/293161a0&amp;lt;/ref&amp;gt;). &lt;br /&gt;
&lt;br /&gt;
====BmorPBP structure and function====&lt;br /&gt;
The protein has 164 amino acids that forms 6-7 alpha helices (depends on the protein conformation). Three &amp;lt;font color=#FFEF00&amp;gt;&amp;lt;b&amp;gt;disulfide bonds&amp;lt;/b&amp;gt;&amp;lt;/font&amp;gt; formed by &amp;lt;scene name=&#039;68/683383/Cysteins6/1&#039;&amp;gt;6 cystein &amp;lt;/scene&amp;gt; residues tied four helices, and form the compact and robust structure of the protein. As expected from a soluble protein, its surface is covered with &amp;lt;scene name=&#039;68/683383/Charged_resid/1&#039;&amp;gt;charged residues&amp;lt;/scene&amp;gt;, which allows it to make interactions with the water molecule and solubilize in the sensillar lymph.&lt;br /&gt;
&lt;br /&gt;
====BmorPBP - ligand binding====&lt;br /&gt;
The protein natural ligand is the moth pheromone &amp;lt;scene name=&#039;68/683383/Bombykol_ligand_in_2p71/1&#039;&amp;gt;Bombykol&amp;lt;/scene&amp;gt;. However, it was demonstrated that other molecules can also bound to the protein cavity &amp;lt;ref&amp;gt;doi: 10.1016/j.str.2007.07.013&amp;lt;/ref&amp;gt;. The interaction with the ligand is being made by 4 alpha helices 1, 4, 5 and 6 in the core of the protein, which form the binding cavity &amp;lt;ref&amp;gt;doi: 10.1016/S1074-5521(00)00078-8&amp;lt;/ref&amp;gt;.    &lt;br /&gt;
Inside the binding cavity, &amp;lt;scene name=&#039;68/683383/Residues_interacting/1&#039;&amp;gt;non-charged residues&amp;lt;/scene&amp;gt; are interacting with the pheromone, mainly by van der waals bounds. Out of those residues, some are conserved across OBP of lepidopteran (&amp;lt;font color=#8DB600&amp;gt;&amp;lt;b&amp;gt;in green&amp;lt;/b&amp;gt;&amp;lt;/font&amp;gt;), and the rest are conserved in lepidopteran PBP only (&amp;lt;font color=#318CE7&amp;gt;&amp;lt;b&amp;gt;in light blue&amp;lt;/b&amp;gt;&amp;lt;/font&amp;gt;).   &lt;br /&gt;
In addition, the hydroxyl group of the pheromone bombykol forms a &amp;lt;scene name=&#039;68/683383/Ser56_interaction_with_oxg/2&#039;&amp;gt;hydrogen bond with the sidechain of Ser56&amp;lt;/scene&amp;gt;, Ser56 in red, oxygens are in purple (O–O distance of 2.8 Å).  &lt;br /&gt;
&lt;br /&gt;
====Protein conformations====&lt;br /&gt;
[[Image:A -B forms without ligand.png|thumb|upright=2|The A and B forms without ligand (PDB IDs: [[1gm0]] and [[1ls8]]).]]&lt;br /&gt;
[[Image:A to b with ligand.png|thumb|upright=2|The A and B forms with ligand (PDB IDs: [[1gm0]] and [[1ls8]]).]]&lt;br /&gt;
&lt;br /&gt;
BmorPBP has two conformations: The &#039;&#039;&#039;&amp;quot;closed form&amp;quot; (A)&#039;&#039;&#039; and the &#039;&#039;&amp;quot;open form&amp;quot; (B)&#039;&#039;&amp;lt;ref&amp;gt;DOI: 10.1074/jbc.274.43.30950&amp;lt;/ref&amp;gt;. The bombykol and the alpha-helix loacated in the c-terminus of the protein compete for the binding site: when the c-terminus is inside the binding cavity it get&#039;s an alpha helix shape, and the protien is in its &amp;quot;close form&amp;quot; (B), whereas in the &amp;quot;open form&amp;quot; (A) the c-terminus is outside of the protein and has no defined secondary structure. Binding experiments have shown that the B-form binds 15 times higher than the A-form &amp;lt;ref&amp;gt;doi: 10.1073/pnas.0501447102&amp;lt;/ref&amp;gt;, therefore considered to be the carrier of the pheromone. The complex of the A-form and the pheromone, is then considered the form that activates the receptor.         &lt;br /&gt;
&lt;br /&gt;
The &amp;lt;scene name=&#039;68/683383/1dqe-1gm0/4&#039;&amp;gt;transition between the two conformation&amp;lt;/scene&amp;gt; is both pH and ligand dependent &amp;lt;ref&amp;gt;doi: 10.1073?pnas.251532998&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI: 10.1016/j.bbrc.2005.07.176&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;doi: 10.1073/pnas.1317706110&amp;lt;/ref&amp;gt;. In short, the B-form (c-terminus outside the cavity) occurs only at neutral pH and in the presence of the ligand. The A-form (c-terminus inside the cavity) occurs at both low and neutral pH, yet at the latter only in the absence of ligand. Therefore, in neutral pH when the ligand is binding to the protein in its A-form, the complex formation causes a change in conformation to the B-form. However, both A and B forms are equally distributed in the lymph.&lt;br /&gt;
{{Button Toggle AnimationOnPause}}&lt;br /&gt;
   &lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Conformation transition mechanism:&#039;&#039;&#039;&lt;br /&gt;
The c-terminus of the protein bears mostly &amp;lt;scene name=&#039;68/683383/Hydrophobic_resid/1&#039;&amp;gt;non-polar amino acids&amp;lt;/scene&amp;gt;. Yet on the surface of the helix there are three exceptional amino acids: Asp-132, Glu-137, and Glu-141, which are conserved in moth PBP &amp;lt;ref&amp;gt;doi: 10.1016/j.bbrc.2005.07.176&amp;lt;/ref&amp;gt;. Of these, residues &amp;lt;scene name=&#039;68/683383/Asp132/1&#039;&amp;gt;Asp-132&amp;lt;/scene&amp;gt; (and Glu-141, if present) triggers the formation of the alpha-helix upon protonation at low pH. This causes the transition from the &amp;lt;scene name=&#039;68/683383/B_form_with_ligand/1&#039;&amp;gt;&amp;quot;A form&amp;quot;&amp;lt;/scene&amp;gt;, to the &amp;lt;scene name=&#039;68/683383/A_form_with_ligand/1&#039;&amp;gt;&amp;quot;B form&amp;quot;&amp;lt;/scene&amp;gt; and the ejaculation of the ligand from the binding pocket, which is replaced by the formatted alpha helix&amp;lt;ref&amp;gt;doi: 10.1016/j.bbrc&amp;lt;/ref&amp;gt;. &lt;br /&gt;
Studies on other Lepidopterans that show a similar pH dependent conformation suggests that this model is a general model moth PBP&amp;lt;ref name=&amp;quot;Leal&amp;quot; /&amp;gt;. Nonetheless, the enormous diversity among insects is not allowing us to assume this model is true for all insects&#039; OBPs.&lt;br /&gt;
[[Image:N model extended.png|thumb|upright=2.5|Figure 1. The events prior the neuron excitation, following the &amp;quot;N model&amp;quot; suggested by Kaissling (2009)&amp;lt;ref name=&amp;quot;Kaissling 2009&amp;quot; /&amp;gt;: The pheromone enters the sensillar lymph through a pore in cuticle. The pheromone can then be degraded by the ODE (1) -or- bind to the A and B protein forms (2a and 2b, respectively).  When the complex arrives at the low pH near the membrane, the transition is in favor of the A-form, (3) in which the -c-terminus is forming an alpha helix inside the binding cavity, pushing out the pheromone. The activation of the complex of odorant receptor and coreceptor (OR:OR-CO), is induced by ether the complex of pheromone-PBP, or by the pheromone alone (5, two options). The B-form can also act as a scavenger, as it mediates the deactivation of the pheromone (6) and releases it to the ODE (6)]] &lt;br /&gt;
====Receptor activation====&lt;br /&gt;
Two theories have been proposed for the activation of the odorant receptors located on the dendrtirte membrane. One theory suggests that the pheromone-PBP complex is needed for the receptor activation, while the second theory argue that the pheromone itself is sufficient for the activation of the receptor.   &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;Activation by the pheromone alone&#039;&#039;&#039; &lt;br /&gt;
This model is supported by the pH dependent conformation transition, that is described above. The bulk of the sensillar lymph is in neutral pH (6.5-7), while environment near the dendrite membrane bears a low pH (4.5), due to the negative charges on the surface of the membrane &amp;lt;ref&amp;gt;DOI: 10.1016/0040-8166(84)90004-1&amp;lt;/ref&amp;gt;, which cause the accumulation of positively charged kations near the membrane surface (20-50 nm)&amp;lt;ref name=&amp;quot;Kaissling 2009&amp;quot; /&amp;gt;. According to this model, the pheromone is entering the sensillar lymph through a pore in the cuticle, then it can be either degraded by odorant degrading enzymes (ODE) or bind to a PBP (of both forms). Once the complex is arriving to the low pH environment near the dendrite membrane the PBP will shift to the A-form, thereby ejaculating the ligand from the binding pocket, allowing it to activate the OR:CO-OR complex and the cellular signal transduction begins.      &lt;br /&gt;
 &lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;Activation by the complex pheromone-PBP&#039;&#039;&#039;&lt;br /&gt;
An alternative mode of action was proposed for the receptor activation in &#039;&#039;Drosophila melanogaster&#039;&#039;, where it was found that the complex of pheromone-PBP is required for the activity of pheromone-sensitive neurons &amp;lt;ref&amp;gt;DOI: 10.1016/j.neuron.2004.12.031&amp;lt;ref/&amp;gt;&amp;lt;ref&amp;gt;doi: 10.1016/j.cell.2008.04.046&amp;lt;ref/&amp;gt; &lt;br /&gt;
&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== See also == &lt;br /&gt;
*[[Odorant_binding_protein_3D_structures]]&lt;br /&gt;
*[[Chemical communication in arthropods]]&lt;br /&gt;
*[[Pheromone binding protein]]&lt;br /&gt;
== References ==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Nurit Eliash</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Odorant_binding_protein&amp;diff=2368695</id>
		<title>Odorant binding protein</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Odorant_binding_protein&amp;diff=2368695"/>
		<updated>2015-01-28T12:07:44Z</updated>

		<summary type="html">&lt;p&gt;Nurit Eliash: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;==Introduction==&lt;br /&gt;
Odorant-binding protein (OBP) are soluble proteins which involve in the processes of odorant detection in the olfactory sensilla &amp;lt;ref name=&amp;quot;Pelosi 2014&amp;quot;&amp;gt;doi: 10.3389/fphys.2014.00320&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Though functionally same, vertebrates and insects OBP have different origin and structure.&lt;br /&gt;
OBPs are important for insect olfaction. For instance, OBP76a (LUSH) in the fly [http://en.wikipedia.org/wiki/Drosophila_melanogaster &#039;&#039;Drosophila melanogaster&#039;&#039;] is required for the detection of the pheromone vaccenyl acetate &amp;lt;ref name=&amp;quot;Xu 2005&amp;quot;&amp;gt;doi: 10.1016/j.neuron.2004.12.031&amp;lt;/ref&amp;gt; and has been proven to adopt a conformation that activates the odorant receptor &amp;lt;ref name=&amp;quot;Laughlin 2008&amp;quot;&amp;gt;doi: 10.1016/j.cell.2008.04.046&amp;lt;/ref&amp;gt;. &lt;br /&gt;
[[Image:Bombyx mori.jpg|thumb|upright=1|&#039;&#039;Bombyx mori&#039;&#039;, the silk moth, picture by [https://www.flickr.com/photos/depredator007/2522038240/ Fernando Cuenca]]]&lt;br /&gt;
[[Image:Bombykol.png|thumb|upright=1|Bombykol, a sex pheromone of &#039;&#039;Bombyx mori&#039;&#039;, from [http://pubchem.ncbi.nlm.nih.gov/compound/Bombykol#section=Top PubChem]]]&lt;br /&gt;
&lt;br /&gt;
==OBP in insects==&lt;br /&gt;
==== OBP Function ====&lt;br /&gt;
Despite five decades of intensive research, the exact roles of OBP and the mechanism by which the odorant receptor (OR) is activated are still in dispute &amp;lt;ref name=&amp;quot;Leal&amp;quot;&amp;gt;DOI: 10.1146/annurev-ento-120811-153635&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI: 10.1007/s00359-009-0461-4&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;A few functions have been suggested for OBP:&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
1. Solubelizing the odorant molecule and its transportation in the sensillar lymph.&lt;br /&gt;
&lt;br /&gt;
2. Protecting the odorant molecule from the odorant degrading enzymes, in the sensillar lymph.&lt;br /&gt;
&lt;br /&gt;
3. Activating of the odorant receptor on the dendrite membrane, by the odorant-OBP complex.&lt;br /&gt;
&lt;br /&gt;
4. Mediating the deactivation of the odorant molecule after the activation of the receptor.&lt;br /&gt;
&lt;br /&gt;
5. An organic anion (the protein has 9 negative charges).&lt;br /&gt;
&lt;br /&gt;
Of all, the first role of OBP as an odorant solubilizer and carrier is generally accepted.&lt;br /&gt;
&lt;br /&gt;
In order to explain the structure and function of these fascinating proteins, this page will further focus on a particular OBP - the well investigated &#039;&#039;[http://en.wikipedia.org/wiki/Bombyx_mori Bombyx mori]&#039;&#039; PBP: [http://www.uniprot.org/uniprot/P34174 BmorPBP].&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
====&#039;&#039;Bombyx mori&#039;&#039; BmorPBP (lets talk about sex..)====&lt;br /&gt;
&amp;lt;StructureSection load=&#039;1ls8&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;&#039;&#039;Bombyx mori&#039;&#039; PBP -BmorPBP scene=&#039;&#039;&amp;gt;&lt;br /&gt;
Pheromone binding proteins (PBPs) are specialized members of the insect odorant-binding protein (OBP) super-family.   &lt;br /&gt;
The main purpose in the dult moth&#039;s short life is reproduction. In fact, the male and female moth invest all of theire energy and resourses hoping to reach to the ultimate goal-  mating. This long journey begins when the female moth releases a sex pheromone, usualy in specific hours in the night &amp;lt;ref&amp;gt;doi: 10.1007/BF01946910&amp;lt;/ref&amp;gt;. &lt;br /&gt;
BmorPBP was first identified in the &#039;&#039;B. mori&#039;&#039; male antennae by Krieger et al. in 1996 &amp;lt;ref&amp;gt;doi: 10.1016/0965-1748(95)00096-8&amp;lt;/ref&amp;gt;, as the PBP of the first sex pheromone discovered ((E,Z)-10,12-hexadecadienol, or [http://en.wikipedia.org/wiki/Bombykol Bombykol]). The male moth needs to detect minute amount of the pheromone in the air, while following turbulent wind-born pheromone trail and response fast (experimental evidence shows a response time of 0.5 seconds&amp;lt;ref&amp;gt;doi: 10.1038/293161a0&amp;lt;/ref&amp;gt;). &lt;br /&gt;
&lt;br /&gt;
====BmorPBP structure and function====&lt;br /&gt;
The protein has 164 amino acids that forms 6-7 alpha helices (depends on the protein conformation). Three &amp;lt;font color=#FFEF00&amp;gt;&amp;lt;b&amp;gt;disulfide bonds&amp;lt;/b&amp;gt;&amp;lt;/font&amp;gt; formed by &amp;lt;scene name=&#039;68/683383/Cysteins6/1&#039;&amp;gt;6 cystein &amp;lt;/scene&amp;gt; residues tied four helices, and form the compact and robust structure of the protein. As expected from a soluble protein, its surface is covered with &amp;lt;scene name=&#039;68/683383/Charged_resid/1&#039;&amp;gt;charged residues&amp;lt;/scene&amp;gt;, which allows it to make interactions with the water molecule and solubilize in the sensillar lymph.&lt;br /&gt;
&lt;br /&gt;
====BmorPBP - ligand binding====&lt;br /&gt;
The protein natural ligand is the moth pheromone &amp;lt;scene name=&#039;68/683383/Bombykol_ligand_in_2p71/1&#039;&amp;gt;Bombykol&amp;lt;/scene&amp;gt;. However, it was demonstrated that other molecules can also bound to the protein cavity &amp;lt;ref&amp;gt;doi: 10.1016/j.str.2007.07.013&amp;lt;/ref&amp;gt;. The interaction with the ligand is being made by 4 alpha helices 1, 4, 5 and 6 in the core of the protein, which form the binding cavity &amp;lt;ref&amp;gt;doi: 10.1016/S1074-5521(00)00078-8&amp;lt;/ref&amp;gt;.    &lt;br /&gt;
Inside the binding cavity, &amp;lt;scene name=&#039;68/683383/Residues_interacting/1&#039;&amp;gt;non-charged residues&amp;lt;/scene&amp;gt; are interacting with the pheromone, mainly by van der waals bounds. Out of those residues, some are conserved across OBP of lepidopteran (&amp;lt;font color=#8DB600&amp;gt;&amp;lt;b&amp;gt;in green&amp;lt;/b&amp;gt;&amp;lt;/font&amp;gt;), and the rest are conserved in lepidopteran PBP only (&amp;lt;font color=#318CE7&amp;gt;&amp;lt;b&amp;gt;in light blue&amp;lt;/b&amp;gt;&amp;lt;/font&amp;gt;).   &lt;br /&gt;
In addition, the hydroxyl group of the pheromone bombykol forms a &amp;lt;scene name=&#039;68/683383/Ser56_interaction_with_oxg/2&#039;&amp;gt;hydrogen bond with the sidechain of Ser56&amp;lt;/scene&amp;gt;, Ser56 in red, oxygens are in purple (O–O distance of 2.8 Å).  &lt;br /&gt;
&lt;br /&gt;
====Protein conformations====&lt;br /&gt;
[[Image:A -B forms without ligand.png|thumb|upright=2|The A and B forms without ligand (PDB IDs: [[1gm0]] and [[1ls8]]).]]&lt;br /&gt;
[[Image:A to b with ligand.png|thumb|upright=2|The A and B forms with ligand (PDB IDs: [[1gm0]] and [[1ls8]]).]]&lt;br /&gt;
&lt;br /&gt;
BmorPBP has two conformations: The &#039;&#039;&#039;&amp;quot;closed form&amp;quot; (A)&#039;&#039;&#039; and the &#039;&#039;&amp;quot;open form&amp;quot; (B)&#039;&#039;&amp;lt;ref&amp;gt;DOI: 10.1074/jbc.274.43.30950&amp;lt;/ref&amp;gt;. The bombykol and the alpha-helix loacated in the c-terminus of the protein compete for the binding site: when the c-terminus is inside the binding cavity it get&#039;s an alpha helix shape, and the protien is in its &amp;quot;close form&amp;quot; (B), whereas in the &amp;quot;open form&amp;quot; (A) the c-terminus is outside of the protein and has no defined secondary structure. Binding experiments have shown that the B-form binds 15 times higher than the A-form &amp;lt;ref&amp;gt;doi: 10.1073/pnas.0501447102&amp;lt;/ref&amp;gt;, therefore considered to be the carrier of the pheromone. The complex of the A-form and the pheromone, is then considered the form that activates the receptor.         &lt;br /&gt;
&lt;br /&gt;
The &amp;lt;scene name=&#039;68/683383/1dqe-1gm0/4&#039;&amp;gt;transition between the two conformation&amp;lt;/scene&amp;gt; is both pH and ligand dependent &amp;lt;ref&amp;gt;doi: 10.1073?pnas.251532998&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI: 10.1016/j.bbrc.2005.07.176&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;doi: 10.1073/pnas.1317706110&amp;lt;/ref&amp;gt;. In short, the B-form (c-terminus outside the cavity) occurs only at neutral pH and in the presence of the ligand. The A-form (c-terminus inside the cavity) occurs at both low and neutral pH, yet at the latter only in the absence of ligand. Therefore, in neutral pH when the ligand is binding to the protein in its A-form, the complex formation causes a change in conformation to the B-form. However, both A and B forms are equally distributed in the lymph.&lt;br /&gt;
{{Button Toggle AnimationOnPause}}&lt;br /&gt;
   &lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Conformation transition mechanism:&#039;&#039;&#039;&lt;br /&gt;
The c-terminus of the protein bears mostly &amp;lt;scene name=&#039;68/683383/Hydrophobic_resid/1&#039;&amp;gt;non-polar amino acids&amp;lt;/scene&amp;gt;. Yet on the surface of the helix there are three exceptional amino acids: Asp-132, Glu-137, and Glu-141, which are conserved in moth PBP &amp;lt;ref&amp;gt;doi: 10.1016/j.bbrc.2005.07.176&amp;lt;/ref&amp;gt;. Of these, residues &amp;lt;scene name=&#039;68/683383/Asp132/1&#039;&amp;gt;Asp-132&amp;lt;/scene&amp;gt; (and Glu-141, if present) triggers the formation of the alpha-helix upon protonation at low pH. This causes the transition from the &amp;lt;scene name=&#039;68/683383/B_form_with_ligand/1&#039;&amp;gt;&amp;quot;A form&amp;quot;&amp;lt;/scene&amp;gt;, to the &amp;lt;scene name=&#039;68/683383/A_form_with_ligand/1&#039;&amp;gt;&amp;quot;B form&amp;quot;&amp;lt;/scene&amp;gt; and the ejaculation of the ligand from the binding pocket, which is replaced by the formatted alpha helix&amp;lt;ref&amp;gt;doi: 10.1016/j.bbrc&amp;lt;/ref&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
Studies on other Lepidopterans that show a similar pH dependent conformation suggests that this model is a general model moth PBP&amp;lt;ref name=&amp;quot;Leal&amp;quot; /&amp;gt;. &lt;br /&gt;
Nonetheless, the enormous diversity among insects is not allowing us to assume this model is true for all insects&#039; OBPs.&lt;br /&gt;
[[Image:N model extended.png|thumb|upright=2.5|Figure 1. The events prior the neuron excitation, following the &amp;quot;N model&amp;quot; suggested by Kaissling (2009)&amp;lt;ref name=&amp;quot;Kaissling 2009&amp;quot; /&amp;gt;: The pheromone enters the sensillar lymph through a pore in cuticle. The pheromone can then be degraded by the ODE (1) -or- bind to the A and B protein forms (2a and 2b, respectively).  When the complex arrives at the low pH near the membrane, the transition is in favor of the A-form, (3) in which the -c-terminus is forming an alpha helix inside the binding cavity, pushing out the pheromone. The activation of the complex of odorant receptor and coreceptor (OR:OR-CO), is induced by ether the complex of pheromone-PBP, or by the pheromone alone (5, two options). The B-form can also act as a scavenger, as it mediates the deactivation of the pheromone (6) and releases it to the ODE (6)]] &lt;br /&gt;
====Receptor activation====&lt;br /&gt;
Two theories have been proposed for the activation of the odorant receptors located on the dendrtirte membrane. One theory suggests that the pheromone-PBP complex is needed for the receptor activation, while the second theory argue that the pheromone itself is sufficient for the activation of the receptor.   &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;Activation by the pheromone alone&#039;&#039;&#039; &lt;br /&gt;
This model is supported by the pH dependent conformation transition, that is described above. The bulk of the sensillar lymph is in neutral pH (6.5-7), while environment near the dendrite membrane bears a low pH (4.5), due to the negative charges on the surface of the membrane &amp;lt;ref&amp;gt;DOI: 10.1016/0040-8166(84)90004-1&amp;lt;/ref&amp;gt;, which cause the accumulation of positively charged kations near the membrane surface (20-50 nm)&amp;lt;ref name=&amp;quot;Kaissling 2009&amp;quot; /&amp;gt;. According to this model (illustrated in [[figure 1]]), the pheromone is entering the sensillar lymph through a pore in the cuticle, then it can be either degraded by odorant degrading enzymes (ODE) or bind to a PBP (of both forms). Once the complex is arriving to the low pH environment near the dendrite membrane the PBP will shift to the A-form, thereby ejaculating the ligand from the binding pocket, allowing it to activate the OR:CO-OR complex and the cellular signal transduction begins.      &lt;br /&gt;
 &lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;Activation by the complex pheromone-PBP&#039;&#039;&#039;&lt;br /&gt;
An alternative mode of action was proposed for the receptor activation in Drosophila, where it was found that the complex of pheromone-PBP is required for the activity of pheromone-sensitive neurons &amp;lt;ref&amp;gt;DOI: 10.1016/j.neuron.2004.12.031&amp;lt;ref/&amp;gt;&amp;lt;ref&amp;gt;doi: 10.1016/j.cell.2008.04.046&amp;lt;ref/&amp;gt; &lt;br /&gt;
&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== See also == &lt;br /&gt;
*[[Odorant_binding_protein_3D_structures]]&lt;br /&gt;
*[[Chemical communication in arthropods]]&lt;br /&gt;
*[[Pheromone binding protein]]&lt;br /&gt;
== References ==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Nurit Eliash</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Odorant_binding_protein&amp;diff=2368694</id>
		<title>Odorant binding protein</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Odorant_binding_protein&amp;diff=2368694"/>
		<updated>2015-01-28T12:06:33Z</updated>

		<summary type="html">&lt;p&gt;Nurit Eliash: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;==Introduction==&lt;br /&gt;
Odorant-binding protein (OBP) are soluble proteins which involve in the processes of odorant detection in the olfactory sensilla &amp;lt;ref name=&amp;quot;Pelosi 2014&amp;quot;&amp;gt;doi: 10.3389/fphys.2014.00320&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Though functionally same, vertebrates and insects OBP have different origin and structure.&lt;br /&gt;
OBPs are important for insect olfaction. For instance, OBP76a (LUSH) in the fly [http://en.wikipedia.org/wiki/Drosophila_melanogaster &#039;&#039;Drosophila melanogaster&#039;&#039;] is required for the detection of the pheromone vaccenyl acetate &amp;lt;ref name=&amp;quot;Xu 2005&amp;quot;&amp;gt;doi: 10.1016/j.neuron.2004.12.031&amp;lt;/ref&amp;gt; and has been proven to adopt a conformation that activates the odorant receptor &amp;lt;ref name=&amp;quot;Laughlin 2008&amp;quot;&amp;gt;doi: 10.1016/j.cell.2008.04.046&amp;lt;/ref&amp;gt;. &lt;br /&gt;
[[Image:Bombyx mori.jpg|thumb|upright=1|&#039;&#039;Bombyx mori&#039;&#039;, the silk moth, picture by [https://www.flickr.com/photos/depredator007/2522038240/ Fernando Cuenca]]]&lt;br /&gt;
[[Image:Bombykol.png|thumb|upright=1|Bombykol, a sex pheromone of &#039;&#039;Bombyx mori&#039;&#039;, from [http://pubchem.ncbi.nlm.nih.gov/compound/Bombykol#section=Top PubChem]]]&lt;br /&gt;
&lt;br /&gt;
==OBP in insects==&lt;br /&gt;
==== OBP Function ====&lt;br /&gt;
Despite five decades of intensive research, the exact roles of OBP and the mechanism by which the odorant receptor (OR) is activated are still in dispute &amp;lt;ref name=&amp;quot;Leal&amp;quot;&amp;gt;DOI: 10.1146/annurev-ento-120811-153635&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI: 10.1007/s00359-009-0461-4&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;A few functions have been suggested for OBP:&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
1. Solubelizing the odorant molecule and its transportation in the sensillar lymph.&lt;br /&gt;
&lt;br /&gt;
2. Protecting the odorant molecule from the odorant degrading enzymes, in the sensillar lymph.&lt;br /&gt;
&lt;br /&gt;
3. Activating of the odorant receptor on the dendrite membrane, by the odorant-OBP complex.&lt;br /&gt;
&lt;br /&gt;
4. Mediating the deactivation of the odorant molecule after the activation of the receptor.&lt;br /&gt;
&lt;br /&gt;
5. An organic anion (the protein has 9 negative charges).&lt;br /&gt;
&lt;br /&gt;
Of all, the first role of OBP as an odorant solubilizer and carrier is generally accepted.&lt;br /&gt;
&lt;br /&gt;
In order to explain the structure and function of these fascinating proteins, this page will further focus on a particular OBP - the well investigated &#039;&#039;[http://en.wikipedia.org/wiki/Bombyx_mori Bombyx mori]&#039;&#039; PBP: [http://www.uniprot.org/uniprot/P34174 BmorPBP].&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
====&#039;&#039;Bombyx mori&#039;&#039; BmorPBP (lets talk about sex..)====&lt;br /&gt;
&amp;lt;StructureSection load=&#039;1ls8&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;&#039;&#039;Bombyx mori&#039;&#039; PBP -BmorPBP scene=&#039;&#039;&amp;gt;&lt;br /&gt;
Pheromone binding proteins (PBPs) are specialized members of the insect odorant-binding protein (OBP) super-family.   &lt;br /&gt;
The main purpose in the dult moth&#039;s short life is reproduction. In fact, the male and female moth invest all of theire energy and resourses hoping to reach to the ultimate goal-  mating. This long journey begins when the female moth releases a sex pheromone, usualy in specific hours in the night &amp;lt;ref&amp;gt;doi: 10.1007/BF01946910&amp;lt;/ref&amp;gt;. &lt;br /&gt;
BmorPBP was first identified in the &#039;&#039;B. mori&#039;&#039; male antennae by Krieger et al. in 1996 &amp;lt;ref&amp;gt;doi: 10.1016/0965-1748(95)00096-8&amp;lt;/ref&amp;gt;, as the PBP of the first sex pheromone discovered ((E,Z)-10,12-hexadecadienol, or [http://en.wikipedia.org/wiki/Bombykol Bombykol]). The male moth needs to detect minute amount of the pheromone in the air, while following turbulent wind-born pheromone trail and response fast (experimental evidence shows a response time of 0.5 seconds&amp;lt;ref&amp;gt;doi: 10.1038/293161a0&amp;lt;/ref&amp;gt;). &lt;br /&gt;
&lt;br /&gt;
====BmorPBP structure and function====&lt;br /&gt;
The protein has 164 amino acids that forms 6-7 alpha helices (depends on the protein conformation). Three &amp;lt;font color=#FFEF00&amp;gt;&amp;lt;b&amp;gt;disulfide bonds&amp;lt;/b&amp;gt;&amp;lt;/font&amp;gt; formed by &amp;lt;scene name=&#039;68/683383/Cysteins6/1&#039;&amp;gt;6 cystein &amp;lt;/scene&amp;gt; residues tied four helices, and form the compact and robust structure of the protein. As expected from a soluble protein, its surface is covered with &amp;lt;scene name=&#039;68/683383/Charged_resid/1&#039;&amp;gt;charged residues&amp;lt;/scene&amp;gt;, which allows it to make interactions with the water molecule and solubilize in the sensillar lymph.&lt;br /&gt;
&lt;br /&gt;
====BmorPBP - ligand binding====&lt;br /&gt;
The protein natural ligand is the moth pheromone &amp;lt;scene name=&#039;68/683383/Bombykol_ligand_in_2p71/1&#039;&amp;gt;Bombykol&amp;lt;/scene&amp;gt;. However, it was demonstrated that other molecules can also bound to the protein cavity &amp;lt;ref&amp;gt;doi: 10.1016/j.str.2007.07.013&amp;lt;/ref&amp;gt;. The interaction with the ligand is being made by 4 alpha helices 1, 4, 5 and 6 in the core of the protein, which form the binding cavity &amp;lt;ref&amp;gt;doi: 10.1016/S1074-5521(00)00078-8&amp;lt;/ref&amp;gt;.    &lt;br /&gt;
Inside the binding cavity, &amp;lt;scene name=&#039;68/683383/Residues_interacting/1&#039;&amp;gt;non-charged residues&amp;lt;/scene&amp;gt; are interacting with the pheromone, mainly by van der waals bounds. Out of those residues, some are conserved across OBP of lepidopteran (&amp;lt;font color=#8DB600&amp;gt;&amp;lt;b&amp;gt;in green&amp;lt;/b&amp;gt;&amp;lt;/font&amp;gt;), and the rest are conserved in lepidopteran PBP only (&amp;lt;font color=#318CE7&amp;gt;&amp;lt;b&amp;gt;in light blue&amp;lt;/b&amp;gt;&amp;lt;/font&amp;gt;).   &lt;br /&gt;
In addition, the hydroxyl group of the pheromone bombykol forms a &amp;lt;scene name=&#039;68/683383/Ser56_interaction_with_oxg/2&#039;&amp;gt;hydrogen bond with the sidechain of Ser56&amp;lt;/scene&amp;gt;, Ser56 in red, oxygens are in purple (O–O distance of 2.8 Å).  &lt;br /&gt;
&lt;br /&gt;
====Protein conformations====&lt;br /&gt;
[[Image:A -B forms without ligand.png|thumb|upright=2|The A and B forms without ligand (PDB IDs: [[1gm0]] and [[1ls8]]).]]&lt;br /&gt;
[[Image:A to b with ligand.png.jpg|thumb|upright=2|The A and B forms with ligand (PDB IDs: [[1gm0]] and [[1ls8]]).]]&lt;br /&gt;
&lt;br /&gt;
BmorPBP has two conformations: The &#039;&#039;&#039;&amp;quot;closed form&amp;quot; (A)&#039;&#039;&#039; and the &#039;&#039;&amp;quot;open form&amp;quot; (B)&#039;&#039;&amp;lt;ref&amp;gt;DOI: 10.1074/jbc.274.43.30950&amp;lt;/ref&amp;gt;. The bombykol and the alpha-helix loacated in the c-terminus of the protein compete for the binding site: when the c-terminus is inside the binding cavity it get&#039;s an alpha helix shape, and the protien is in its &amp;quot;close form&amp;quot; (B), whereas in the &amp;quot;open form&amp;quot; (A) the c-terminus is outside of the protein and has no defined secondary structure. Binding experiments have shown that the B-form binds 15 times higher than the A-form &amp;lt;ref&amp;gt;doi: 10.1073/pnas.0501447102&amp;lt;/ref&amp;gt;, therefore considered to be the carrier of the pheromone. The complex of the A-form and the pheromone, is then considered the form that activates the receptor.         &lt;br /&gt;
&lt;br /&gt;
The &amp;lt;scene name=&#039;68/683383/1dqe-1gm0/4&#039;&amp;gt;transition between the two conformation&amp;lt;/scene&amp;gt; is both pH and ligand dependent &amp;lt;ref&amp;gt;doi: 10.1073?pnas.251532998&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI: 10.1016/j.bbrc.2005.07.176&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;doi: 10.1073/pnas.1317706110&amp;lt;/ref&amp;gt;. In short, the B-form (c-terminus outside the cavity) occurs only at neutral pH and in the presence of the ligand. The A-form (c-terminus inside the cavity) occurs at both low and neutral pH, yet at the latter only in the absence of ligand. Therefore, in neutral pH when the ligand is binding to the protein in its A-form, the complex formation causes a change in conformation to the B-form. However, both A and B forms are equally distributed in the lymph.&lt;br /&gt;
{{Button Toggle AnimationOnPause}}&lt;br /&gt;
   &lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Conformation transition mechanism:&#039;&#039;&#039;&lt;br /&gt;
The c-terminus of the protein bears mostly &amp;lt;scene name=&#039;68/683383/Hydrophobic_resid/1&#039;&amp;gt;non-polar amino acids&amp;lt;/scene&amp;gt;. Yet on the surface of the helix there are three exceptional amino acids: Asp-132, Glu-137, and Glu-141, which are conserved in moth PBP &amp;lt;ref&amp;gt;doi: 10.1016/j.bbrc.2005.07.176&amp;lt;/ref&amp;gt;. Of these, residues &amp;lt;scene name=&#039;68/683383/Asp132/1&#039;&amp;gt;Asp-132&amp;lt;/scene&amp;gt; (and Glu-141, if present) triggers the formation of the alpha-helix upon protonation at low pH. This causes the transition from the &amp;lt;scene name=&#039;68/683383/B_form_with_ligand/1&#039;&amp;gt;&amp;quot;A form&amp;quot;&amp;lt;/scene&amp;gt;, to the &amp;lt;scene name=&#039;68/683383/A_form_with_ligand/1&#039;&amp;gt;&amp;quot;B form&amp;quot;&amp;lt;/scene&amp;gt; and the ejaculation of the ligand from the binding pocket, which is replaced by the formatted alpha helix&amp;lt;ref&amp;gt;doi: 10.1016/j.bbrc&amp;lt;/ref&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
Studies on other Lepidopterans that show a similar pH dependent conformation suggests that this model is a general model moth PBP&amp;lt;ref name=&amp;quot;Leal&amp;quot; /&amp;gt;. &lt;br /&gt;
Nonetheless, the enormous diversity among insects is not allowing us to assume this model is true for all insects&#039; OBPs.&lt;br /&gt;
[[Image:N model extended.png|thumb|upright=2.5|Figure 1. The events prior the neuron excitation, following the &amp;quot;N model&amp;quot; suggested by Kaissling (2009)&amp;lt;ref name=&amp;quot;Kaissling 2009&amp;quot; /&amp;gt;: The pheromone enters the sensillar lymph through a pore in cuticle. The pheromone can then be degraded by the ODE (1) -or- bind to the A and B protein forms (2a and 2b, respectively).  When the complex arrives at the low pH near the membrane, the transition is in favor of the A-form, (3) in which the -c-terminus is forming an alpha helix inside the binding cavity, pushing out the pheromone. The activation of the complex of odorant receptor and coreceptor (OR:OR-CO), is induced by ether the complex of pheromone-PBP, or by the pheromone alone (5, two options). The B-form can also act as a scavenger, as it mediates the deactivation of the pheromone (6) and releases it to the ODE (6)]] &lt;br /&gt;
====Receptor activation====&lt;br /&gt;
Two theories have been proposed for the activation of the odorant receptors located on the dendrtirte membrane. One theory suggests that the pheromone-PBP complex is needed for the receptor activation, while the second theory argue that the pheromone itself is sufficient for the activation of the receptor.   &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;Activation by the pheromone alone&#039;&#039;&#039; &lt;br /&gt;
This model is supported by the pH dependent conformation transition, that is described above. The bulk of the sensillar lymph is in neutral pH (6.5-7), while environment near the dendrite membrane bears a low pH (4.5), due to the negative charges on the surface of the membrane &amp;lt;ref&amp;gt;DOI: 10.1016/0040-8166(84)90004-1&amp;lt;/ref&amp;gt;, which cause the accumulation of positively charged kations near the membrane surface (20-50 nm)&amp;lt;ref name=&amp;quot;Kaissling 2009&amp;quot; /&amp;gt;. According to this model (illustrated in [[figure 1]]), the pheromone is entering the sensillar lymph through a pore in the cuticle, then it can be either degraded by odorant degrading enzymes (ODE) or bind to a PBP (of both forms). Once the complex is arriving to the low pH environment near the dendrite membrane the PBP will shift to the A-form, thereby ejaculating the ligand from the binding pocket, allowing it to activate the OR:CO-OR complex and the cellular signal transduction begins.      &lt;br /&gt;
 &lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;Activation by the complex pheromone-PBP&#039;&#039;&#039;&lt;br /&gt;
An alternative mode of action was proposed for the receptor activation in Drosophila, where it was found that the complex of pheromone-PBP is required for the activity of pheromone-sensitive neurons &amp;lt;ref&amp;gt;DOI: 10.1016/j.neuron.2004.12.031&amp;lt;ref/&amp;gt;&amp;lt;ref&amp;gt;doi: 10.1016/j.cell.2008.04.046&amp;lt;ref/&amp;gt; &lt;br /&gt;
&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== See also == &lt;br /&gt;
*[[Odorant_binding_protein_3D_structures]]&lt;br /&gt;
*[[Chemical communication in arthropods]]&lt;br /&gt;
*[[Pheromone binding protein]]&lt;br /&gt;
== References ==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Nurit Eliash</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=File:A_to_b_with_ligand.png&amp;diff=2368693</id>
		<title>File:A to b with ligand.png</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=File:A_to_b_with_ligand.png&amp;diff=2368693"/>
		<updated>2015-01-28T12:05:06Z</updated>

		<summary type="html">&lt;p&gt;Nurit Eliash: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&lt;/div&gt;</summary>
		<author><name>Nurit Eliash</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Odorant_binding_protein&amp;diff=2368683</id>
		<title>Odorant binding protein</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Odorant_binding_protein&amp;diff=2368683"/>
		<updated>2015-01-28T11:55:42Z</updated>

		<summary type="html">&lt;p&gt;Nurit Eliash: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;==Introduction==&lt;br /&gt;
Odorant-binding protein (OBP) are soluble proteins which involve in the processes of odorant detection in the olfactory sensilla &amp;lt;ref name=&amp;quot;Pelosi 2014&amp;quot;&amp;gt;doi: 10.3389/fphys.2014.00320&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Though functionally same, vertebrates and insects OBP have different origin and structure.&lt;br /&gt;
OBPs are important for insect olfaction. For instance, OBP76a (LUSH) in the fly [http://en.wikipedia.org/wiki/Drosophila_melanogaster &#039;&#039;Drosophila melanogaster&#039;&#039;] is required for the detection of the pheromone vaccenyl acetate &amp;lt;ref name=&amp;quot;Xu 2005&amp;quot;&amp;gt;doi: 10.1016/j.neuron.2004.12.031&amp;lt;/ref&amp;gt; and has been proven to adopt a conformation that activates the odorant receptor &amp;lt;ref name=&amp;quot;Laughlin 2008&amp;quot;&amp;gt;doi: 10.1016/j.cell.2008.04.046&amp;lt;/ref&amp;gt;. &lt;br /&gt;
[[Image:Bombyx mori.jpg|thumb|upright=1|&#039;&#039;Bombyx mori&#039;&#039;, the silk moth, picture by [https://www.flickr.com/photos/depredator007/2522038240/ Fernando Cuenca]]]&lt;br /&gt;
[[Image:Bombykol.png|thumb|upright=1|Bombykol, a sex pheromone of &#039;&#039;Bombyx mori&#039;&#039;, from [http://pubchem.ncbi.nlm.nih.gov/compound/Bombykol#section=Top PubChem]]]&lt;br /&gt;
&lt;br /&gt;
==OBP in insects==&lt;br /&gt;
==== OBP Function ====&lt;br /&gt;
Despite five decades of intensive research, the exact roles of OBP and the mechanism by which the odorant receptor (OR) is activated are still in dispute &amp;lt;ref name=&amp;quot;Leal&amp;quot;&amp;gt;DOI: 10.1146/annurev-ento-120811-153635&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI: 10.1007/s00359-009-0461-4&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;A few functions have been suggested for OBP:&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
1. Solubelizing the odorant molecule and its transportation in the sensillar lymph.&lt;br /&gt;
&lt;br /&gt;
2. Protecting the odorant molecule from the odorant degrading enzymes, in the sensillar lymph.&lt;br /&gt;
&lt;br /&gt;
3. Activating of the odorant receptor on the dendrite membrane, by the odorant-OBP complex.&lt;br /&gt;
&lt;br /&gt;
4. Mediating the deactivation of the odorant molecule after the activation of the receptor.&lt;br /&gt;
&lt;br /&gt;
5. An organic anion (the protein has 9 negative charges).&lt;br /&gt;
&lt;br /&gt;
Of all, the first role of OBP as an odorant solubilizer and carrier is generally accepted.&lt;br /&gt;
&lt;br /&gt;
In order to explain the structure and function of these fascinating proteins, this page will further focus on a particular OBP - the well investigated &#039;&#039;[http://en.wikipedia.org/wiki/Bombyx_mori Bombyx mori]&#039;&#039; PBP: [http://www.uniprot.org/uniprot/P34174 BmorPBP].&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
====&#039;&#039;Bombyx mori&#039;&#039; BmorPBP (lets talk about sex..)====&lt;br /&gt;
&amp;lt;StructureSection load=&#039;1ls8&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;&#039;&#039;Bombyx mori&#039;&#039; PBP -BmorPBP scene=&#039;&#039;&amp;gt;&lt;br /&gt;
Pheromone binding proteins (PBPs) are specialized members of the insect odorant-binding protein (OBP) super-family.   &lt;br /&gt;
The main purpose in the dult moth&#039;s short life is reproduction. In fact, the male and female moth invest all of theire energy and resourses hoping to reach to the ultimate goal-  mating. This long journey begins when the female moth releases a sex pheromone, usualy in specific hours in the night &amp;lt;ref&amp;gt;doi: 10.1007/BF01946910&amp;lt;/ref&amp;gt;. &lt;br /&gt;
BmorPBP was first identified in the &#039;&#039;B. mori&#039;&#039; male antennae by Krieger et al. in 1996 &amp;lt;ref&amp;gt;doi: 10.1016/0965-1748(95)00096-8&amp;lt;/ref&amp;gt;, as the PBP of the first sex pheromone discovered ((E,Z)-10,12-hexadecadienol, or [http://en.wikipedia.org/wiki/Bombykol Bombykol]). The male moth needs to detect minute amount of the pheromone in the air, while following turbulent wind-born pheromone trail and response fast (experimental evidence shows a response time of 0.5 seconds&amp;lt;ref&amp;gt;doi: 10.1038/293161a0&amp;lt;/ref&amp;gt;). &lt;br /&gt;
&lt;br /&gt;
====BmorPBP structure and function====&lt;br /&gt;
The protein has 164 amino acids that forms 6-7 alpha helices (depends on the protein conformation). Three &amp;lt;font color=#FFEF00&amp;gt;&amp;lt;b&amp;gt;disulfide bonds&amp;lt;/b&amp;gt;&amp;lt;/font&amp;gt; formed by &amp;lt;scene name=&#039;68/683383/Cysteins6/1&#039;&amp;gt;6 cystein &amp;lt;/scene&amp;gt; residues tied four helices, and form the compact and robust structure of the protein. As expected from a soluble protein, its surface is covered with &amp;lt;scene name=&#039;68/683383/Charged_resid/1&#039;&amp;gt;charged residues&amp;lt;/scene&amp;gt;, which allows it to make interactions with the water molecule and solubilize in the sensillar lymph.&lt;br /&gt;
&lt;br /&gt;
====BmorPBP - ligand binding====&lt;br /&gt;
The protein natural ligand is the moth pheromone &amp;lt;scene name=&#039;68/683383/Bombykol_ligand_in_2p71/1&#039;&amp;gt;Bombykol&amp;lt;/scene&amp;gt;. However, it was demonstrated that other molecules can also bound to the protein cavity &amp;lt;ref&amp;gt;doi: 10.1016/j.str.2007.07.013&amp;lt;/ref&amp;gt;. The interaction with the ligand is being made by 4 alpha helices 1, 4, 5 and 6 in the core of the protein, which form the binding cavity &amp;lt;ref&amp;gt;doi: 10.1016/S1074-5521(00)00078-8&amp;lt;/ref&amp;gt;.    &lt;br /&gt;
Inside the binding cavity, &amp;lt;scene name=&#039;68/683383/Residues_interacting/1&#039;&amp;gt;non-charged residues&amp;lt;/scene&amp;gt; are interacting with the pheromone, mainly by van der waals bounds. Out of those residues, some are conserved across OBP of lepidopteran (&amp;lt;font color=#8DB600&amp;gt;&amp;lt;b&amp;gt;in green&amp;lt;/b&amp;gt;&amp;lt;/font&amp;gt;), and the rest are conserved in lepidopteran PBP only (&amp;lt;font color=#318CE7&amp;gt;&amp;lt;b&amp;gt;in light blue&amp;lt;/b&amp;gt;&amp;lt;/font&amp;gt;).   &lt;br /&gt;
In addition, the hydroxyl group of the pheromone bombykol forms a &amp;lt;scene name=&#039;68/683383/Ser56_interaction_with_oxg/2&#039;&amp;gt;hydrogen bond with the sidechain of Ser56&amp;lt;/scene&amp;gt;, Ser56 in red, oxygens are in purple (O–O distance of 2.8 Å).  &lt;br /&gt;
&lt;br /&gt;
====Protein conformations====&lt;br /&gt;
[[Image:A -B forms without ligand.png|thumb|upright=2|The A and B forms without ligand (PDB IDs: [[1gm0]] and [[1ls8]]).]]&lt;br /&gt;
BmorPBP has two conformations: The &#039;&#039;&#039;&amp;quot;closed form&amp;quot; (A)&#039;&#039;&#039; and the &#039;&#039;&amp;quot;open form&amp;quot; (B)&#039;&#039;&amp;lt;ref&amp;gt;DOI: 10.1074/jbc.274.43.30950&amp;lt;/ref&amp;gt;. The bombykol and the alpha-helix loacated in the c-terminus of the protein compete for the binding site: when the c-terminus is inside the binding cavity it get&#039;s an alpha helix shape, and the protien is in its &amp;quot;close form&amp;quot; (B), whereas in the &amp;quot;open form&amp;quot; (A) the c-terminus is outside of the protein and has no defined secondary structure. Binding experiments have shown that the B-form binds 15 times higher than the A-form &amp;lt;ref&amp;gt;doi: 10.1073/pnas.0501447102&amp;lt;/ref&amp;gt;, therefore considered to be the carrier of the pheromone. The complex of the A-form and the pheromone, is then considered the form that activates the receptor.         &lt;br /&gt;
&lt;br /&gt;
The &amp;lt;scene name=&#039;68/683383/1dqe-1gm0/4&#039;&amp;gt;transition between the two conformation&amp;lt;/scene&amp;gt; is both pH and ligand dependent &amp;lt;ref&amp;gt;doi: 10.1073?pnas.251532998&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI: 10.1016/j.bbrc.2005.07.176&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;doi: 10.1073/pnas.1317706110&amp;lt;/ref&amp;gt;. In short, the B-form (c-terminus outside the cavity) occurs only at neutral pH and in the presence of the ligand. The A-form (c-terminus inside the cavity) occurs at both low and neutral pH, yet at the latter only in the absence of ligand. Therefore, in neutral pH when the ligand is binding to the protein in its A-form, the complex formation causes a change in conformation to the B-form. However, both A and B forms are equally distributed in the lymph.&lt;br /&gt;
{{Button Toggle AnimationOnPause}}&lt;br /&gt;
   &lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Conformation transition mechanism:&#039;&#039;&#039;&lt;br /&gt;
The c-terminus of the protein bears mostly &amp;lt;scene name=&#039;68/683383/Hydrophobic_resid/1&#039;&amp;gt;non-polar amino acids&amp;lt;/scene&amp;gt;. Yet on the surface of the helix there are three exceptional amino acids: Asp-132, Glu-137, and Glu-141, which are conserved in moth PBP &amp;lt;ref&amp;gt;doi: 10.1016/j.bbrc.2005.07.176&amp;lt;/ref&amp;gt;. Of these, residues &amp;lt;scene name=&#039;68/683383/Asp132/1&#039;&amp;gt;Asp-132&amp;lt;/scene&amp;gt; (and Glu-141, if present) triggers the formation of the alpha-helix upon protonation at low pH. This causes the transition from the &amp;lt;scene name=&#039;68/683383/B_form_with_ligand/1&#039;&amp;gt;&amp;quot;A form&amp;quot;&amp;lt;/scene&amp;gt;, to the &amp;lt;scene name=&#039;68/683383/A_form_with_ligand/1&#039;&amp;gt;&amp;quot;B form&amp;quot;&amp;lt;/scene&amp;gt; and the ejaculation of the ligand from the binding pocket, which is replaced by the formatted alpha helix&amp;lt;ref&amp;gt;doi: 10.1016/j.bbrc&amp;lt;/ref&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
Studies on other Lepidopterans that show a similar pH dependent conformation suggests that this model is a general model moth PBP&amp;lt;ref name=&amp;quot;Leal&amp;quot; /&amp;gt;. &lt;br /&gt;
Nonetheless, the enormous diversity among insects is not allowing us to assume this model is true for all insects&#039; OBPs.&lt;br /&gt;
[[Image:N model extended.png|thumb|upright=2.5|Figure 1. The events prior the neuron excitation, following the &amp;quot;N model&amp;quot; suggested by Kaissling (2009)&amp;lt;ref name=&amp;quot;Kaissling 2009&amp;quot; /&amp;gt;: The pheromone enters the sensillar lymph through a pore in cuticle. The pheromone can then be degraded by the ODE (1) -or- bind to the A and B protein forms (2a and 2b, respectively).  When the complex arrives at the low pH near the membrane, the transition is in favor of the A-form, (3) in which the -c-terminus is forming an alpha helix inside the binding cavity, pushing out the pheromone. The activation of the complex of odorant receptor and coreceptor (OR:OR-CO), is induced by ether the complex of pheromone-PBP, or by the pheromone alone (5, two options). The B-form can also act as a scavenger, as it mediates the deactivation of the pheromone (6) and releases it to the ODE (6)]] &lt;br /&gt;
====Receptor activation====&lt;br /&gt;
Two theories have been proposed for the activation of the odorant receptors located on the dendrtirte membrane. One theory suggests that the pheromone-PBP complex is needed for the receptor activation, while the second theory argue that the pheromone itself is sufficient for the activation of the receptor.   &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;Activation by the pheromone alone&#039;&#039;&#039; &lt;br /&gt;
This model is supported by the pH dependent conformation transition, that is described above. The bulk of the sensillar lymph is in neutral pH (6.5-7), while environment near the dendrite membrane bears a low pH (4.5), due to the negative charges on the surface of the membrane &amp;lt;ref&amp;gt;DOI: 10.1016/0040-8166(84)90004-1&amp;lt;/ref&amp;gt;, which cause the accumulation of positively charged kations near the membrane surface (20-50 nm)&amp;lt;ref name=&amp;quot;Kaissling 2009&amp;quot; /&amp;gt;. According to this model (illustrated in [[figure 1]]), the pheromone is entering the sensillar lymph through a pore in the cuticle, then it can be either degraded by odorant degrading enzymes (ODE) or bind to a PBP (of both forms). Once the complex is arriving to the low pH environment near the dendrite membrane the PBP will shift to the A-form, thereby ejaculating the ligand from the binding pocket, allowing it to activate the OR:CO-OR complex and the cellular signal transduction begins.      &lt;br /&gt;
 &lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;Activation by the complex pheromone-PBP&#039;&#039;&#039;&lt;br /&gt;
An alternative mode of action was proposed for the receptor activation in Drosophila, where it was found that the complex of pheromone-PBP is required for the activity of pheromone-sensitive neurons &amp;lt;ref&amp;gt;DOI: 10.1016/j.neuron.2004.12.031&amp;lt;ref/&amp;gt;&amp;lt;ref&amp;gt;doi: 10.1016/j.cell.2008.04.046&amp;lt;ref/&amp;gt; &lt;br /&gt;
&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== See also == &lt;br /&gt;
*[[Odorant_binding_protein_3D_structures]]&lt;br /&gt;
*[[Chemical communication in arthropods]]&lt;br /&gt;
*[[Pheromone binding protein]]&lt;br /&gt;
== References ==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Nurit Eliash</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=File:2fjy_A.pdb&amp;diff=2368632</id>
		<title>File:2fjy A.pdb</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=File:2fjy_A.pdb&amp;diff=2368632"/>
		<updated>2015-01-28T11:45:55Z</updated>

		<summary type="html">&lt;p&gt;Nurit Eliash: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&lt;/div&gt;</summary>
		<author><name>Nurit Eliash</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=File:1dqe_A.pdb&amp;diff=2368621</id>
		<title>File:1dqe A.pdb</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=File:1dqe_A.pdb&amp;diff=2368621"/>
		<updated>2015-01-28T11:45:35Z</updated>

		<summary type="html">&lt;p&gt;Nurit Eliash: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&lt;/div&gt;</summary>
		<author><name>Nurit Eliash</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=File:1DQE_2FJY-BOM.pdb&amp;diff=2368612</id>
		<title>File:1DQE 2FJY-BOM.pdb</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=File:1DQE_2FJY-BOM.pdb&amp;diff=2368612"/>
		<updated>2015-01-28T11:43:33Z</updated>

		<summary type="html">&lt;p&gt;Nurit Eliash: uploaded a new version of &amp;quot;Image:1DQE 2FJY-BOM.pdb&amp;quot;&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;== Licensing ==&lt;br /&gt;
{{self|cc-by-3.0}}&lt;/div&gt;</summary>
		<author><name>Nurit Eliash</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=File:1DQE_2FJY-BOM_-1.pdb&amp;diff=2368611</id>
		<title>File:1DQE 2FJY-BOM -1.pdb</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=File:1DQE_2FJY-BOM_-1.pdb&amp;diff=2368611"/>
		<updated>2015-01-28T11:42:37Z</updated>

		<summary type="html">&lt;p&gt;Nurit Eliash: uploaded a new version of &amp;quot;Image:1DQE 2FJY-BOM -1.pdb&amp;quot;&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;== Licensing ==&lt;br /&gt;
{{self|cc-by-3.0}}&lt;/div&gt;</summary>
		<author><name>Nurit Eliash</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Odorant_binding_protein&amp;diff=2368610</id>
		<title>Odorant binding protein</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Odorant_binding_protein&amp;diff=2368610"/>
		<updated>2015-01-28T11:39:47Z</updated>

		<summary type="html">&lt;p&gt;Nurit Eliash: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;==Introduction==&lt;br /&gt;
Odorant-binding protein (OBP) are soluble proteins which involve in the processes of odorant detection in the olfactory sensilla &amp;lt;ref name=&amp;quot;Pelosi 2014&amp;quot;&amp;gt;doi: 10.3389/fphys.2014.00320&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Though functionally same, vertebrates and insects OBP have different origin and structure.&lt;br /&gt;
OBPs are important for insect olfaction. For instance, OBP76a (LUSH) in the fly [http://en.wikipedia.org/wiki/Drosophila_melanogaster &#039;&#039;Drosophila melanogaster&#039;&#039;] is required for the detection of the pheromone vaccenyl acetate &amp;lt;ref name=&amp;quot;Xu 2005&amp;quot;&amp;gt;doi: 10.1016/j.neuron.2004.12.031&amp;lt;/ref&amp;gt; and has been proven to adopt a conformation that activates the odorant receptor &amp;lt;ref name=&amp;quot;Laughlin 2008&amp;quot;&amp;gt;doi: 10.1016/j.cell.2008.04.046&amp;lt;/ref&amp;gt;. &lt;br /&gt;
[[Image:Bombyx mori.jpg|thumb|upright=1|&#039;&#039;Bombyx mori&#039;&#039;, the silk moth, picture by [https://www.flickr.com/photos/depredator007/2522038240/ Fernando Cuenca]]]&lt;br /&gt;
[[Image:Bombykol.png|thumb|upright=1|Bombykol, a sex pheromone of &#039;&#039;Bombyx mori&#039;&#039;, from [http://pubchem.ncbi.nlm.nih.gov/compound/Bombykol#section=Top PubChem]]]&lt;br /&gt;
&lt;br /&gt;
==OBP in insects==&lt;br /&gt;
==== OBP Function ====&lt;br /&gt;
Despite five decades of intensive research, the exact roles of OBP and the mechanism by which the odorant receptor (OR) is activated are still in dispute &amp;lt;ref name=&amp;quot;Leal&amp;quot;&amp;gt;DOI: 10.1146/annurev-ento-120811-153635&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI: 10.1007/s00359-009-0461-4&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;A few functions have been suggested for OBP:&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
1. Solubelizing the odorant molecule and its transportation in the sensillar lymph.&lt;br /&gt;
&lt;br /&gt;
2. Protecting the odorant molecule from the odorant degrading enzymes, in the sensillar lymph.&lt;br /&gt;
&lt;br /&gt;
3. Activating of the odorant receptor on the dendrite membrane, by the odorant-OBP complex.&lt;br /&gt;
&lt;br /&gt;
4. Mediating the deactivation of the odorant molecule after the activation of the receptor.&lt;br /&gt;
&lt;br /&gt;
5. An organic anion (the protein has 9 negative charges).&lt;br /&gt;
&lt;br /&gt;
Of all, the first role of OBP as an odorant solubilizer and carrier is generally accepted.&lt;br /&gt;
&lt;br /&gt;
In order to explain the structure and function of these fascinating proteins, this page will further focus on a particular OBP - the well investigated &#039;&#039;[http://en.wikipedia.org/wiki/Bombyx_mori Bombyx mori]&#039;&#039; PBP: [http://www.uniprot.org/uniprot/P34174 BmorPBP].&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
====&#039;&#039;Bombyx mori&#039;&#039; BmorPBP (lets talk about sex..)====&lt;br /&gt;
&amp;lt;StructureSection load=&#039;1ls8&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;&#039;&#039;Bombyx mori&#039;&#039; PBP -BmorPBP scene=&#039;&#039;&amp;gt;&lt;br /&gt;
Pheromone binding proteins (PBPs) are specialized members of the insect odorant-binding protein (OBP) super-family.   &lt;br /&gt;
The main purpose in the dult moth&#039;s short life is reproduction. In fact, the male and female moth invest all of theire energy and resourses hoping to reach to the ultimate goal-  mating. This long journey begins when the female moth releases a sex pheromone, usualy in specific hours in the night &amp;lt;ref&amp;gt;doi: 10.1007/BF01946910&amp;lt;/ref&amp;gt;. &lt;br /&gt;
BmorPBP was first identified in the &#039;&#039;B. mori&#039;&#039; male antennae by Krieger et al. in 1996 &amp;lt;ref&amp;gt;doi: 10.1016/0965-1748(95)00096-8&amp;lt;/ref&amp;gt;, as the PBP of the first sex pheromone discovered ((E,Z)-10,12-hexadecadienol, or [http://en.wikipedia.org/wiki/Bombykol Bombykol]). The male moth needs to detect minute amount of the pheromone in the air, while following turbulent wind-born pheromone trail and response fast (experimental evidence shows a response time of 0.5 seconds&amp;lt;ref&amp;gt;doi: 10.1038/293161a0&amp;lt;/ref&amp;gt;). &lt;br /&gt;
&lt;br /&gt;
====BmorPBP structure and function====&lt;br /&gt;
The protein has 164 amino acids that forms 6-7 alpha helices (depends on the protein conformation). Three &amp;lt;font color=#FFEF00&amp;gt;&amp;lt;b&amp;gt;disulfide bonds&amp;lt;/b&amp;gt;&amp;lt;/font&amp;gt; formed by &amp;lt;scene name=&#039;68/683383/Cysteins6/1&#039;&amp;gt;6 cystein &amp;lt;/scene&amp;gt; residues tied four helices, and form the compact and robust structure of the protein. As expected from a soluble protein, its surface is covered with &amp;lt;scene name=&#039;68/683383/Charged_resid/1&#039;&amp;gt;charged residues&amp;lt;/scene&amp;gt;, which allows it to make interactions with the water molecule and solubilize in the sensillar lymph.&lt;br /&gt;
&lt;br /&gt;
====BmorPBP - ligand binding====&lt;br /&gt;
The protein natural ligand is the moth pheromone &amp;lt;scene name=&#039;68/683383/Bombykol_ligand_in_2p71/1&#039;&amp;gt;Bombykol&amp;lt;/scene&amp;gt;. However, it was demonstrated that other molecules can also bound to the protein cavity &amp;lt;ref&amp;gt;doi: 10.1016/j.str.2007.07.013&amp;lt;/ref&amp;gt;. The interaction with the ligand is being made by 4 alpha helices 1, 4, 5 and 6 in the core of the protein, which form the binding cavity &amp;lt;ref&amp;gt;doi: 10.1016/S1074-5521(00)00078-8&amp;lt;/ref&amp;gt;.    &lt;br /&gt;
Inside the binding cavity, &amp;lt;scene name=&#039;68/683383/Residues_interacting/1&#039;&amp;gt;non-charged residues&amp;lt;/scene&amp;gt; are interacting with the pheromone, mainly by van der waals bounds. Out of those residues, some are conserved across OBP of lepidopteran (&amp;lt;font color=#8DB600&amp;gt;&amp;lt;b&amp;gt;in green&amp;lt;/b&amp;gt;&amp;lt;/font&amp;gt;), and the rest are conserved in lepidopteran PBP only (&amp;lt;font color=#318CE7&amp;gt;&amp;lt;b&amp;gt;in light blue&amp;lt;/b&amp;gt;&amp;lt;/font&amp;gt;).   &lt;br /&gt;
In addition, the hydroxyl group of the pheromone bombykol forms a &amp;lt;scene name=&#039;68/683383/Ser56_interaction_with_oxg/2&#039;&amp;gt;hydrogen bond with the sidechain of Ser56&amp;lt;/scene&amp;gt;, Ser56 in red, oxygens are in purple (O–O distance of 2.8 Å).  &lt;br /&gt;
&lt;br /&gt;
====Protein conformations====&lt;br /&gt;
[[Image:A -B forms without ligand.png|thumb|upright=2|The A and B forms without ligand (PDB IDs: [[1gm0]] and [[1ls8]]).]]&lt;br /&gt;
BmorPBP has two conformations: The &#039;&#039;&#039;&amp;quot;closed form&amp;quot; (A)&#039;&#039;&#039; and the &#039;&#039;&amp;quot;open form&amp;quot; (B)&#039;&#039;&amp;lt;ref&amp;gt;DOI: 10.1074/jbc.274.43.30950&amp;lt;/ref&amp;gt;. The bombykol and the alpha-helix loacated in the c-terminus of the protein compete for the binding site: when the c-terminus is inside the binding cavity it get&#039;s an alpha helix shape, and the protien is in its &amp;quot;close form&amp;quot; (B), whereas in the &amp;quot;open form&amp;quot; (A) the c-terminus is outside of the protein and has no defined secondary structure. Binding experiments have shown that the B-form binds 15 times higher than the A-form &amp;lt;ref&amp;gt;doi: 10.1073/pnas.0501447102&amp;lt;/ref&amp;gt;, therefore considered to be the carrier of the pheromone. The complex of the A-form and the pheromone, is then considered the form that activates the receptor.         &lt;br /&gt;
&lt;br /&gt;
The &amp;lt;scene name=&#039;68/683383/1dqe-1gm0/4&#039;&amp;gt;transition between the two conformation&amp;lt;/scene&amp;gt; is both pH and ligand dependent &amp;lt;ref&amp;gt;doi: 10.1073?pnas.251532998&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI: 10.1016/j.bbrc.2005.07.176&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;doi: 10.1073/pnas.1317706110&amp;lt;/ref&amp;gt;. In short, the B-form (c-terminus outside the cavity) occurs only at neutral pH and in the presence of the ligand. The A-form (c-terminus inside the cavity) occurs at both low and neutral pH, yet at the latter only in the absence of ligand. Therefore, in neutral pH when the ligand is binding to the protein in its A-form, the complex formation causes a change in conformation to the B-form. However, both A and B forms are equally distributed in the lymph.&lt;br /&gt;
{{Button Toggle AnimationOnPause}}&lt;br /&gt;
   &lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Conformation transition mechanism:&#039;&#039;&#039;&lt;br /&gt;
The c-terminus of the protein bears mostly &amp;lt;scene name=&#039;68/683383/Hydrophobic_resid/1&#039;&amp;gt;non-polar amino acids&amp;lt;/scene&amp;gt;. Yet on the surface of the helix there are three exceptional amino acids: Asp-132, Glu-137, and Glu-141, which are conserved in moth PBP &amp;lt;ref&amp;gt;doi: 10.1016/j.bbrc.2005.07.176&amp;lt;/ref&amp;gt;. Of these, residues &amp;lt;scene name=&#039;68/683383/Asp132/1&#039;&amp;gt;Asp-132&amp;lt;/scene&amp;gt; (and Glu-141, if present) triggers the formation of the alpha-helix upon protonation at low pH. This causes the &amp;lt;scene name=&#039;68/683383/1dqe_2fjy-bom/1&#039;&amp;gt;ejaculation of the ligand from the binding pocket&amp;lt;/scene&amp;gt;, which is replaced by the formatted alpha helix&amp;lt;ref&amp;gt;doi: 10.1016/j.bbrc&amp;lt;/ref&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
{{Button Toggle AnimationOnPause}}&lt;br /&gt;
&lt;br /&gt;
Studies on other Lepidopterans that show a similar pH dependent conformation suggests that this model is a general model moth PBP&amp;lt;ref name=&amp;quot;Leal&amp;quot; /&amp;gt;. &lt;br /&gt;
Nonetheless, the enormous diversity among insects is not allowing us to assume this model is true for all insects&#039; OBPs.&lt;br /&gt;
[[Image:N model extended.png|thumb|upright=2.5|Figure 1. The events prior the neuron excitation, following the &amp;quot;N model&amp;quot; suggested by Kaissling (2009)&amp;lt;ref name=&amp;quot;Kaissling 2009&amp;quot; /&amp;gt;: The pheromone enters the sensillar lymph through a pore in cuticle. The pheromone can then be degraded by the ODE (1) -or- bind to the A and B protein forms (2a and 2b, respectively).  When the complex arrives at the low pH near the membrane, the transition is in favor of the A-form, (3) in which the -c-terminus is forming an alpha helix inside the binding cavity, pushing out the pheromone. The activation of the complex of odorant receptor and coreceptor (OR:OR-CO), is induced by ether the complex of pheromone-PBP, or by the pheromone alone (5, two options). The B-form can also act as a scavenger, as it mediates the deactivation of the pheromone (6) and releases it to the ODE (6)]] &lt;br /&gt;
====Receptor activation====&lt;br /&gt;
Two theories have been proposed for the activation of the odorant receptors located on the dendrtirte membrane. One theory suggests that the pheromone-PBP complex is needed for the receptor activation, while the second theory argue that the pheromone itself is sufficient for the activation of the receptor.   &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;Activation by the pheromone alone&#039;&#039;&#039; &lt;br /&gt;
This model is supported by the pH dependent conformation transition, that is described above. The bulk of the sensillar lymph is in neutral pH (6.5-7), while environment near the dendrite membrane bears a low pH (4.5), due to the negative charges on the surface of the membrane &amp;lt;ref&amp;gt;DOI: 10.1016/0040-8166(84)90004-1&amp;lt;/ref&amp;gt;, which cause the accumulation of positively charged kations near the membrane surface (20-50 nm)&amp;lt;ref name=&amp;quot;Kaissling 2009&amp;quot; /&amp;gt;. According to this model (illustrated in [[figure 1]]), the pheromone is entering the sensillar lymph through a pore in the cuticle, then it can be either degraded by odorant degrading enzymes (ODE) or bind to a PBP (of both forms). Once the complex is arriving to the low pH environment near the dendrite membrane the PBP will shift to the A-form, thereby ejaculating the ligand from the binding pocket, allowing it to activate the OR:CO-OR complex and the cellular signal transduction begins.      &lt;br /&gt;
 &lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;Activation by the complex pheromone-PBP&#039;&#039;&#039;&lt;br /&gt;
An alternative mode of action was proposed for the receptor activation in Drosophila, where it was found that the complex of pheromone-PBP is required for the activity of pheromone-sensitive neurons &amp;lt;ref&amp;gt;DOI: 10.1016/j.neuron.2004.12.031&amp;lt;ref/&amp;gt;&amp;lt;ref&amp;gt;doi: 10.1016/j.cell.2008.04.046&amp;lt;ref/&amp;gt; &lt;br /&gt;
&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== See also == &lt;br /&gt;
*[[Odorant_binding_protein_3D_structures]]&lt;br /&gt;
*[[Chemical communication in arthropods]]&lt;br /&gt;
*[[Pheromone binding protein]]&lt;br /&gt;
== References ==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Nurit Eliash</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Odorant_binding_protein&amp;diff=2368601</id>
		<title>Odorant binding protein</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Odorant_binding_protein&amp;diff=2368601"/>
		<updated>2015-01-28T11:26:38Z</updated>

		<summary type="html">&lt;p&gt;Nurit Eliash: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;==Introduction==&lt;br /&gt;
Odorant-binding protein (OBP) are soluble proteins which involve in the processes of odorant detection in the olfactory sensilla &amp;lt;ref name=&amp;quot;Pelosi 2014&amp;quot;&amp;gt;doi: 10.3389/fphys.2014.00320&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Though functionally same, vertebrates and insects OBP have different origin and structure.&lt;br /&gt;
OBPs are important for insect olfaction. For instance, OBP76a (LUSH) in the fly [http://en.wikipedia.org/wiki/Drosophila_melanogaster &#039;&#039;Drosophila melanogaster&#039;&#039;] is required for the detection of the pheromone vaccenyl acetate &amp;lt;ref name=&amp;quot;Xu 2005&amp;quot;&amp;gt;doi: 10.1016/j.neuron.2004.12.031&amp;lt;/ref&amp;gt; and has been proven to adopt a conformation that activates the odorant receptor &amp;lt;ref name=&amp;quot;Laughlin 2008&amp;quot;&amp;gt;doi: 10.1016/j.cell.2008.04.046&amp;lt;/ref&amp;gt;. &lt;br /&gt;
[[Image:Bombyx mori.jpg|thumb|upright=1|&#039;&#039;Bombyx mori&#039;&#039;, the silk moth, picture by [https://www.flickr.com/photos/depredator007/2522038240/ Fernando Cuenca]]]&lt;br /&gt;
[[Image:Bombykol.png|thumb|upright=1|Bombykol, a sex pheromone of &#039;&#039;Bombyx mori&#039;&#039;, from [http://pubchem.ncbi.nlm.nih.gov/compound/Bombykol#section=Top PubChem]]]&lt;br /&gt;
&lt;br /&gt;
==OBP in insects==&lt;br /&gt;
==== OBP Function ====&lt;br /&gt;
Despite five decades of intensive research, the exact roles of OBP and the mechanism by which the odorant receptor (OR) is activated are still in dispute &amp;lt;ref name=&amp;quot;Leal&amp;quot;&amp;gt;DOI: 10.1146/annurev-ento-120811-153635&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI: 10.1007/s00359-009-0461-4&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;A few functions have been suggested for OBP:&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
1. Solubelizing the odorant molecule and its transportation in the sensillar lymph.&lt;br /&gt;
&lt;br /&gt;
2. Protecting the odorant molecule from the odorant degrading enzymes, in the sensillar lymph.&lt;br /&gt;
&lt;br /&gt;
3. Activating of the odorant receptor on the dendrite membrane, by the odorant-OBP complex.&lt;br /&gt;
&lt;br /&gt;
4. Mediating the deactivation of the odorant molecule after the activation of the receptor.&lt;br /&gt;
&lt;br /&gt;
5. An organic anion (the protein has 9 negative charges).&lt;br /&gt;
&lt;br /&gt;
Of all, the first role of OBP as an odorant solubilizer and carrier is generally accepted.&lt;br /&gt;
&lt;br /&gt;
In order to explain the structure and function of these fascinating proteins, this page will further focus on a particular OBP - the well investigated &#039;&#039;[http://en.wikipedia.org/wiki/Bombyx_mori Bombyx mori]&#039;&#039; PBP: [http://www.uniprot.org/uniprot/P34174 BmorPBP].&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
====&#039;&#039;Bombyx mori&#039;&#039; BmorPBP (lets talk about sex..)====&lt;br /&gt;
&amp;lt;StructureSection load=&#039;1ls8&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;&#039;&#039;Bombyx mori&#039;&#039; PBP -BmorPBP scene=&#039;&#039;&amp;gt;&lt;br /&gt;
Pheromone binding proteins (PBPs) are specialized members of the insect odorant-binding protein (OBP) super-family.   &lt;br /&gt;
The main purpose in the dult moth&#039;s short life is reproduction. In fact, the male and female moth invest all of theire energy and resourses hoping to reach to the ultimate goal-  mating. This long journey begins when the female moth releases a sex pheromone, usualy in specific hours in the night &amp;lt;ref&amp;gt;doi: 10.1007/BF01946910&amp;lt;/ref&amp;gt;. &lt;br /&gt;
BmorPBP was first identified in the &#039;&#039;B. mori&#039;&#039; male antennae by Krieger et al. in 1996 &amp;lt;ref&amp;gt;doi: 10.1016/0965-1748(95)00096-8&amp;lt;/ref&amp;gt;, as the PBP of the first sex pheromone discovered ((E,Z)-10,12-hexadecadienol, or [http://en.wikipedia.org/wiki/Bombykol Bombykol]). The male moth needs to detect minute amount of the pheromone in the air, while following turbulent wind-born pheromone trail and response fast (experimental evidence shows a response time of 0.5 seconds&amp;lt;ref&amp;gt;doi: 10.1038/293161a0&amp;lt;/ref&amp;gt;). &lt;br /&gt;
&lt;br /&gt;
====BmorPBP structure and function====&lt;br /&gt;
The protein has 164 amino acids that forms 6-7 alpha helices (depends on the protein conformation). Three &amp;lt;font color=#FFEF00&amp;gt;&amp;lt;b&amp;gt;disulfide bonds&amp;lt;/b&amp;gt;&amp;lt;/font&amp;gt; formed by &amp;lt;scene name=&#039;68/683383/Cysteins6/1&#039;&amp;gt;6 cystein &amp;lt;/scene&amp;gt; residues tied four helices, and form the compact and robust structure of the protein. As expected from a soluble protein, its surface is covered with &amp;lt;scene name=&#039;68/683383/Charged_resid/1&#039;&amp;gt;charged residues&amp;lt;/scene&amp;gt;, which allows it to make interactions with the water molecule and solubilize in the sensillar lymph.&lt;br /&gt;
&lt;br /&gt;
====BmorPBP - ligand binding====&lt;br /&gt;
The protein natural ligand is the moth pheromone &amp;lt;scene name=&#039;68/683383/Bombykol_ligand_in_2p71/1&#039;&amp;gt;Bombykol&amp;lt;/scene&amp;gt;. However, it was demonstrated that other molecules can also bound to the protein cavity &amp;lt;ref&amp;gt;doi: 10.1016/j.str.2007.07.013&amp;lt;/ref&amp;gt;. The interaction with the ligand is being made by 4 alpha helices 1, 4, 5 and 6 in the core of the protein, which form the binding cavity &amp;lt;ref&amp;gt;doi: 10.1016/S1074-5521(00)00078-8&amp;lt;/ref&amp;gt;.    &lt;br /&gt;
Inside the binding cavity, &amp;lt;scene name=&#039;68/683383/Residues_interacting/1&#039;&amp;gt;non-charged residues&amp;lt;/scene&amp;gt; are interacting with the pheromone, mainly by van der waals bounds. Out of those residues, some are conserved across OBP of lepidopteran (&amp;lt;font color=#8DB600&amp;gt;&amp;lt;b&amp;gt;in green&amp;lt;/b&amp;gt;&amp;lt;/font&amp;gt;), and the rest are conserved in lepidopteran PBP only (&amp;lt;font color=#318CE7&amp;gt;&amp;lt;b&amp;gt;in light blue&amp;lt;/b&amp;gt;&amp;lt;/font&amp;gt;).   &lt;br /&gt;
In addition, the hydroxyl group of the pheromone bombykol forms a &amp;lt;scene name=&#039;68/683383/Ser56_interaction_with_oxg/2&#039;&amp;gt;hydrogen bond with the sidechain of Ser56&amp;lt;/scene&amp;gt;, Ser56 in red, oxygens are in purple (O–O distance of 2.8 Å).  &lt;br /&gt;
&lt;br /&gt;
====Protein conformations====&lt;br /&gt;
[[Image:A -B forms without ligand.png|thumb|upright=2|The A and B forms without ligand (PDB IDs: [[1gm0]] and [[1ls8]]).]]&lt;br /&gt;
BmorPBP has two conformations: The &#039;&#039;&#039;&amp;quot;closed form&amp;quot; (A)&#039;&#039;&#039; and the &#039;&#039;&amp;quot;open form&amp;quot; (B)&#039;&#039;&amp;lt;ref&amp;gt;DOI: 10.1074/jbc.274.43.30950&amp;lt;/ref&amp;gt;. The bombykol and the alpha-helix loacated in the c-terminus of the protein compete for the binding site: when the c-terminus is inside the binding cavity it get&#039;s an alpha helix shape, and the protien is in its &amp;quot;close form&amp;quot; (B), whereas in the &amp;quot;open form&amp;quot; (A) the c-terminus is outside of the protein and has no defined secondary structure. Binding experiments have shown that the B-form binds 15 times higher than the A-form &amp;lt;ref&amp;gt;doi: 10.1073/pnas.0501447102&amp;lt;/ref&amp;gt;, therefore considered to be the carrier of the pheromone. The complex of the A-form and the pheromone, is then considered the form that activates the receptor.         &lt;br /&gt;
&lt;br /&gt;
The &amp;lt;scene name=&#039;68/683383/1dqe-1gm0/4&#039;&amp;gt;transition between the two conformation&amp;lt;/scene&amp;gt; is both pH and ligand dependent &amp;lt;ref&amp;gt;doi: 10.1073?pnas.251532998&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI: 10.1016/j.bbrc.2005.07.176&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;doi: 10.1073/pnas.1317706110&amp;lt;/ref&amp;gt;. In short, the B-form (c-terminus outside the cavity) occurs only at neutral pH and in the presence of the ligand. The A-form (c-terminus inside the cavity) occurs at both low and neutral pH, yet at the latter only in the absence of ligand. Therefore, in neutral pH when the ligand is binding to the protein in its A-form, the complex formation causes a change in conformation to the B-form. However, both A and B forms are equally distributed in the lymph.&lt;br /&gt;
{{Button Toggle AnimationOnPause}}&lt;br /&gt;
   &lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Conformation transition mechanism:&#039;&#039;&#039;&lt;br /&gt;
The c-terminus of the protein bears mostly non-polar amino acids. Yet on the surface of the helix there are three exceptional amino acids: Asp-132, Glu-137, and Glu-141, which are conserved in moth PBP &amp;lt;ref&amp;gt;doi: 10.1016/j.bbrc.2005.07.176&amp;lt;/ref&amp;gt;. Of these, residues &amp;lt;scene name=&#039;68/683383/Asp132/1&#039;&amp;gt;Asp-132&amp;lt;/scene&amp;gt; (and Glu-141, if present) triggers the formation of the alpha-helix upon protonation at low pH. This causes the &amp;lt;scene name=&#039;68/683383/1dqe_2fjy-bom/1&#039;&amp;gt;ejaculation of the ligand from the binding pocket&amp;lt;/scene&amp;gt;, which is replaced by the formatted alpha helix&amp;lt;ref&amp;gt;doi: 10.1016/j.bbrc&amp;lt;/ref&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
{{Button Toggle AnimationOnPause}}&lt;br /&gt;
&lt;br /&gt;
Studies on other Lepidopterans that show a similar pH dependent conformation suggests that this model is a general model moth PBP&amp;lt;ref name=&amp;quot;Leal&amp;quot; /&amp;gt;. &lt;br /&gt;
Nonetheless, the enormous diversity among insects is not allowing us to assume this model is true for all insects&#039; OBPs.&lt;br /&gt;
[[Image:N model extended.png|thumb|upright=2.5|Figure 1. The events prior the neuron excitation, following the &amp;quot;N model&amp;quot; suggested by Kaissling (2009)&amp;lt;ref name=&amp;quot;Kaissling 2009&amp;quot; /&amp;gt;: The pheromone enters the sensillar lymph through a pore in cuticle. The pheromone can then be degraded by the ODE (1) -or- bind to the A and B protein forms (2a and 2b, respectively).  When the complex arrives at the low pH near the membrane, the transition is in favor of the A-form, (3) in which the -c-terminus is forming an alpha helix inside the binding cavity, pushing out the pheromone. The activation of the complex of odorant receptor and coreceptor (OR:OR-CO), is induced by ether the complex of pheromone-PBP, or by the pheromone alone (5, two options). The B-form can also act as a scavenger, as it mediates the deactivation of the pheromone (6) and releases it to the ODE (6)]] &lt;br /&gt;
====Receptor activation====&lt;br /&gt;
Two theories have been proposed for the activation of the odorant receptors located on the dendrtirte membrane. One theory suggests that the pheromone-PBP complex is needed for the receptor activation, while the second theory argue that the pheromone itself is sufficient for the activation of the receptor.   &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;Activation by the pheromone alone&#039;&#039;&#039; &lt;br /&gt;
This model is supported by the pH dependent conformation transition, that is described above. The bulk of the sensillar lymph is in neutral pH (6.5-7), while environment near the dendrite membrane bears a low pH (4.5), due to the negative charges on the surface of the membrane &amp;lt;ref&amp;gt;DOI: 10.1016/0040-8166(84)90004-1&amp;lt;/ref&amp;gt;, which cause the accumulation of positively charged kations near the membrane surface (20-50 nm)&amp;lt;ref name=&amp;quot;Kaissling 2009&amp;quot; /&amp;gt;. According to this model (illustrated in [[figure 1]]), the pheromone is entering the sensillar lymph through a pore in the cuticle, then it can be either degraded by odorant degrading enzymes (ODE) or bind to a PBP (of both forms). Once the complex is arriving to the low pH environment near the dendrite membrane the PBP will shift to the A-form, thereby ejaculating the ligand from the binding pocket, allowing it to activate the OR:CO-OR complex and the cellular signal transduction begins.      &lt;br /&gt;
 &lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;Activation by the complex pheromone-PBP&#039;&#039;&#039;&lt;br /&gt;
An alternative mode of action was proposed for the receptor activation in Drosophila, where it was found that the complex of pheromone-PBP is required for the activity of pheromone-sensitive neurons &amp;lt;ref&amp;gt;DOI: 10.1016/j.neuron.2004.12.031&amp;lt;ref/&amp;gt;&amp;lt;ref&amp;gt;doi: 10.1016/j.cell.2008.04.046&amp;lt;ref/&amp;gt; &lt;br /&gt;
&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== See also == &lt;br /&gt;
*[[Odorant_binding_protein_3D_structures]]&lt;br /&gt;
*[[Chemical communication in arthropods]]&lt;br /&gt;
*[[Pheromone binding protein]]&lt;br /&gt;
== References ==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Nurit Eliash</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Odorant_binding_protein&amp;diff=2368534</id>
		<title>Odorant binding protein</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Odorant_binding_protein&amp;diff=2368534"/>
		<updated>2015-01-28T11:20:01Z</updated>

		<summary type="html">&lt;p&gt;Nurit Eliash: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;==Introduction==&lt;br /&gt;
Odorant-binding protein (OBP) are soluble proteins which involve in the processes of odorant detection in the olfactory sensilla &amp;lt;ref name=&amp;quot;Pelosi 2014&amp;quot;&amp;gt;doi: 10.3389/fphys.2014.00320&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Though functionally same, vertebrates and insects OBP have different origin and structure.&lt;br /&gt;
OBPs are important for insect olfaction. For instance, OBP76a (LUSH) in the fly [http://en.wikipedia.org/wiki/Drosophila_melanogaster &#039;&#039;Drosophila melanogaster&#039;&#039;] is required for the detection of the pheromone vaccenyl acetate &amp;lt;ref name=&amp;quot;Xu 2005&amp;quot;&amp;gt;doi: 10.1016/j.neuron.2004.12.031&amp;lt;/ref&amp;gt; and has been proven to adopt a conformation that activates the odorant receptor &amp;lt;ref name=&amp;quot;Laughlin 2008&amp;quot;&amp;gt;doi: 10.1016/j.cell.2008.04.046&amp;lt;/ref&amp;gt;. &lt;br /&gt;
[[Image:Bombyx mori.jpg|thumb|upright=1|&#039;&#039;Bombyx mori&#039;&#039;, the silk moth, picture by [https://www.flickr.com/photos/depredator007/2522038240/ Fernando Cuenca]]]&lt;br /&gt;
[[Image:Bombykol.png|thumb|upright=1|Bombykol, a sex pheromone of &#039;&#039;Bombyx mori&#039;&#039;, from [http://pubchem.ncbi.nlm.nih.gov/compound/Bombykol#section=Top PubChem]]]&lt;br /&gt;
&lt;br /&gt;
==OBP in insects==&lt;br /&gt;
==== OBP Function ====&lt;br /&gt;
Despite five decades of intensive research, the exact roles of OBP and the mechanism by which the odorant receptor (OR) is activated are still in dispute &amp;lt;ref name=&amp;quot;Leal&amp;quot;&amp;gt;DOI: 10.1146/annurev-ento-120811-153635&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI: 10.1007/s00359-009-0461-4&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;A few functions have been suggested for OBP:&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
1. Solubelizing the odorant molecule and its transportation in the sensillar lymph.&lt;br /&gt;
&lt;br /&gt;
2. Protecting the odorant molecule from the odorant degrading enzymes, in the sensillar lymph.&lt;br /&gt;
&lt;br /&gt;
3. Activating of the odorant receptor on the dendrite membrane, by the odorant-OBP complex.&lt;br /&gt;
&lt;br /&gt;
4. Mediating the deactivation of the odorant molecule after the activation of the receptor.&lt;br /&gt;
&lt;br /&gt;
5. An organic anion (the protein has 9 negative charges).&lt;br /&gt;
&lt;br /&gt;
Of all, the first role of OBP as an odorant solubilizer and carrier is generally accepted.&lt;br /&gt;
&lt;br /&gt;
In order to explain the structure and function of these fascinating proteins, this page will further focus on a particular OBP - the well investigated &#039;&#039;[http://en.wikipedia.org/wiki/Bombyx_mori Bombyx mori]&#039;&#039; PBP: [http://www.uniprot.org/uniprot/P34174 BmorPBP].&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
====&#039;&#039;Bombyx mori&#039;&#039; BmorPBP (lets talk about sex..)====&lt;br /&gt;
&amp;lt;StructureSection load=&#039;1ls8&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;&#039;&#039;Bombyx mori&#039;&#039; PBP -BmorPBP scene=&#039;&#039;&amp;gt;&lt;br /&gt;
Pheromone binding proteins (PBPs) are specialized members of the insect odorant-binding protein (OBP) super-family.   &lt;br /&gt;
The main purpose in the dult moth&#039;s short life is reproduction. In fact, the male and female moth invest all of theire energy and resourses hoping to reach to the ultimate goal-  mating. This long journey begins when the female moth releases a sex pheromone, usualy in specific hours in the night &amp;lt;ref&amp;gt;doi: 10.1007/BF01946910&amp;lt;/ref&amp;gt;. &lt;br /&gt;
BmorPBP was first identified in the &#039;&#039;B. mori&#039;&#039; male antennae by Krieger et al. in 1996 &amp;lt;ref&amp;gt;doi: 10.1016/0965-1748(95)00096-8&amp;lt;/ref&amp;gt;, as the PBP of the first sex pheromone discovered ((E,Z)-10,12-hexadecadienol, or [http://en.wikipedia.org/wiki/Bombykol Bombykol]). The male moth needs to detect minute amount of the pheromone in the air, while following turbulent wind-born pheromone trail and response fast (experimental evidence shows a response time of 0.5 seconds&amp;lt;ref&amp;gt;doi: 10.1038/293161a0&amp;lt;/ref&amp;gt;). &lt;br /&gt;
&lt;br /&gt;
====BmorPBP structure and function====&lt;br /&gt;
The protein has 164 amino acids that forms 6-7 alpha helices (depends on the protein conformation). Three &amp;lt;font color=#FFEF00&amp;gt;&amp;lt;b&amp;gt;disulfide bonds&amp;lt;/b&amp;gt;&amp;lt;/font&amp;gt; formed by &amp;lt;scene name=&#039;68/683383/Cysteins6/1&#039;&amp;gt;6 cystein &amp;lt;/scene&amp;gt; residues tied four helices, and form the compact and robust structure of the protein. As expected from a soluble protein, its surface is covered with &amp;lt;scene name=&#039;68/683383/Charged_resid/1&#039;&amp;gt;charged residues&amp;lt;/scene&amp;gt;, which allows it to make interactions with the water molecule and solubilize in the sensillar lymph.&lt;br /&gt;
&lt;br /&gt;
====BmorPBP - ligand binding====&lt;br /&gt;
The protein natural ligand is the moth pheromone &amp;lt;scene name=&#039;68/683383/Bombykol_ligand_in_2p71/1&#039;&amp;gt;Bombykol&amp;lt;/scene&amp;gt;. However, it was demonstrated that other molecules can also bound to the protein cavity &amp;lt;ref&amp;gt;doi: 10.1016/j.str.2007.07.013&amp;lt;/ref&amp;gt;. The interaction with the ligand is being made by 4 alpha helices 1, 4, 5 and 6 in the core of the protein, which form the binding cavity &amp;lt;ref&amp;gt;doi: 10.1016/S1074-5521(00)00078-8&amp;lt;/ref&amp;gt;.    &lt;br /&gt;
Inside the binding cavity, &amp;lt;scene name=&#039;68/683383/Residues_interacting/1&#039;&amp;gt;non-charged residues&amp;lt;/scene&amp;gt; are interacting with the pheromone, mainly by van der waals bounds. Out of those residues, some are conserved across OBP of lepidopteran (&amp;lt;font color=#8DB600&amp;gt;&amp;lt;b&amp;gt;in green&amp;lt;/b&amp;gt;&amp;lt;/font&amp;gt;), and the rest are conserved in lepidopteran PBP only (&amp;lt;font color=#318CE7&amp;gt;&amp;lt;b&amp;gt;in light blue&amp;lt;/b&amp;gt;&amp;lt;/font&amp;gt;).   &lt;br /&gt;
In addition, the hydroxyl group of the pheromone bombykol forms a &amp;lt;scene name=&#039;68/683383/Ser56_interaction_with_oxg/2&#039;&amp;gt;hydrogen bond with the sidechain of Ser56&amp;lt;/scene&amp;gt;, Ser56 in red, oxygens are in purple (O–O distance of 2.8 Å).  &lt;br /&gt;
&lt;br /&gt;
====Protein conformations====&lt;br /&gt;
[[Image:A -B forms without ligand.png|thumb|upright=2|The A and B forms without ligand (PDB IDs: [[1gm0]] and [[1ls8]]).]]&lt;br /&gt;
BmorPBP has two conformations: The &#039;&#039;&#039;&amp;quot;closed form&amp;quot; (A)&#039;&#039;&#039; and the &#039;&#039;&amp;quot;open form&amp;quot; (B)&#039;&#039;&amp;lt;ref&amp;gt;DOI: 10.1074/jbc.274.43.30950&amp;lt;/ref&amp;gt;. The bombykol and the alpha-helix loacated in the c-terminus of the protein compete for the binding site: when the c-terminus is inside the binding cavity it get&#039;s an alpha helix shape, and the protien is in its &amp;quot;close form&amp;quot; (B), whereas in the &amp;quot;open form&amp;quot; (A) the c-terminus is outside of the protein and has no defined secondary structure. Binding experiments have shown that the B-form binds 15 times higher than the A-form &amp;lt;ref&amp;gt;doi: 10.1073/pnas.0501447102&amp;lt;/ref&amp;gt;, therefore considered to be the carrier of the pheromone. The complex of the A-form and the pheromone, is then considered the form that activates the receptor.         &lt;br /&gt;
&lt;br /&gt;
The &amp;lt;scene name=&#039;68/683383/1dqe-1gm0/4&#039;&amp;gt;transition between the two conformation&amp;lt;/scene&amp;gt; is both pH and ligand dependent &amp;lt;ref&amp;gt;doi: 10.1073?pnas.251532998&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI: 10.1016/j.bbrc.2005.07.176&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;doi: 10.1073/pnas.1317706110&amp;lt;/ref&amp;gt;. In short, the B-form (c-terminus outside the cavity) occurs only at neutral pH and in the presence of the ligand. The A-form (c-terminus inside the cavity) occurs at both low and neutral pH, yet at the latter only in the absence of ligand. Therefore, in neutral pH when the ligand is binding to the protein in its A-form, the complex formation causes a change in conformation to the B-form. However, both A and B forms are equally distributed in the lymph.&lt;br /&gt;
{{Button Toggle AnimationOnPause}}&lt;br /&gt;
   &lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Conformation transition mechanism:&#039;&#039;&#039;&lt;br /&gt;
The c-terminus of the protein bears mostly non-polar amino acids. Yet on the surface of the helix there are three exceptional amino acids: Asp-132, Glu-137, and Glu-141, which are conserved in moth PBP &amp;lt;ref&amp;gt;doi: 10.1016/j.bbrc.2005.07.176&amp;lt;/ref&amp;gt;. Of these, residues &amp;lt;scene name=&#039;68/683383/Bombykol_ligand_in_2p71/2&#039;&amp;gt;Asp-132&amp;lt;/scene&amp;gt; (and Glu-141, if present) triggers the formation of the alpha-helix upon protonation at low pH. This causes the &amp;lt;scene name=&#039;68/683383/1dqe_2fjy-bom/1&#039;&amp;gt;ejaculation of the ligand from the binding pocket&amp;lt;/scene&amp;gt;, which is replaced by the formatted alpha helix&amp;lt;ref&amp;gt;doi: 10.1016/j.bbrc&amp;lt;/ref&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
{{Button Toggle AnimationOnPause}}&lt;br /&gt;
&lt;br /&gt;
Studies on other Lepidopterans that show a similar pH dependent conformation suggests that this model is a general model moth PBP&amp;lt;ref name=&amp;quot;Leal&amp;quot; /&amp;gt;. &lt;br /&gt;
Nonetheless, the enormous diversity among insects is not allowing us to assume this model is true for all insects&#039; OBPs.&lt;br /&gt;
[[Image:N model extended.png|thumb|upright=2.5|Figure 1. The events prior the neuron excitation, following the &amp;quot;N model&amp;quot; suggested by Kaissling (2009)&amp;lt;ref name=&amp;quot;Kaissling 2009&amp;quot; /&amp;gt;: The pheromone enters the sensillar lymph through a pore in cuticle. The pheromone can then be degraded by the ODE (1) -or- bind to the A and B protein forms (2a and 2b, respectively).  When the complex arrives at the low pH near the membrane, the transition is in favor of the A-form, (3) in which the -c-terminus is forming an alpha helix inside the binding cavity, pushing out the pheromone. The activation of the complex of odorant receptor and coreceptor (OR:OR-CO), is induced by ether the complex of pheromone-PBP, or by the pheromone alone (5, two options). The B-form can also act as a scavenger, as it mediates the deactivation of the pheromone (6) and releases it to the ODE (6)]] &lt;br /&gt;
====Receptor activation====&lt;br /&gt;
Two theories have been proposed for the activation of the odorant receptors located on the dendrtirte membrane. One theory suggests that the pheromone-PBP complex is needed for the receptor activation, while the second theory argue that the pheromone itself is sufficient for the activation of the receptor.   &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;Activation by the pheromone alone&#039;&#039;&#039; &lt;br /&gt;
This model is supported by the pH dependent conformation transition, that is described above. The bulk of the sensillar lymph is in neutral pH (6.5-7), while environment near the dendrite membrane bears a low pH (4.5), due to the negative charges on the surface of the membrane &amp;lt;ref&amp;gt;DOI: 10.1016/0040-8166(84)90004-1&amp;lt;/ref&amp;gt;, which cause the accumulation of positively charged kations near the membrane surface (20-50 nm)&amp;lt;ref name=&amp;quot;Kaissling 2009&amp;quot; /&amp;gt;. According to this model (illustrated in [[figure 1]]), the pheromone is entering the sensillar lymph through a pore in the cuticle, then it can be either degraded by odorant degrading enzymes (ODE) or bind to a PBP (of both forms). Once the complex is arriving to the low pH environment near the dendrite membrane the PBP will shift to the A-form, thereby ejaculating the ligand from the binding pocket, allowing it to activate the OR:CO-OR complex and the cellular signal transduction begins.      &lt;br /&gt;
 &lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;Activation by the complex pheromone-PBP&#039;&#039;&#039;&lt;br /&gt;
An alternative mode of action was proposed for the receptor activation in Drosophila, where it was found that the complex of pheromone-PBP is required for the activity of pheromone-sensitive neurons &amp;lt;ref&amp;gt;DOI: 10.1016/j.neuron.2004.12.031&amp;lt;ref/&amp;gt;&amp;lt;ref&amp;gt;doi: 10.1016/j.cell.2008.04.046&amp;lt;ref/&amp;gt; &lt;br /&gt;
&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== See also == &lt;br /&gt;
*[[Odorant_binding_protein_3D_structures]]&lt;br /&gt;
*[[Chemical communication in arthropods]]&lt;br /&gt;
*[[Pheromone binding protein]]&lt;br /&gt;
== References ==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Nurit Eliash</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Odorant_binding_protein&amp;diff=2368533</id>
		<title>Odorant binding protein</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Odorant_binding_protein&amp;diff=2368533"/>
		<updated>2015-01-28T11:16:36Z</updated>

		<summary type="html">&lt;p&gt;Nurit Eliash: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;==Introduction==&lt;br /&gt;
Odorant-binding protein (OBP) are soluble proteins which involve in the processes of odorant detection in the olfactory sensilla &amp;lt;ref name=&amp;quot;Pelosi 2014&amp;quot;&amp;gt;doi: 10.3389/fphys.2014.00320&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Though functionally same, vertebrates and insects OBP have different origin and structure.&lt;br /&gt;
OBPs are important for insect olfaction. For instance, OBP76a (LUSH) in the fly [http://en.wikipedia.org/wiki/Drosophila_melanogaster &#039;&#039;Drosophila melanogaster&#039;&#039;] is required for the detection of the pheromone vaccenyl acetate &amp;lt;ref name=&amp;quot;Xu 2005&amp;quot;&amp;gt;doi: 10.1016/j.neuron.2004.12.031&amp;lt;/ref&amp;gt; and has been proven to adopt a conformation that activates the odorant receptor &amp;lt;ref name=&amp;quot;Laughlin 2008&amp;quot;&amp;gt;doi: 10.1016/j.cell.2008.04.046&amp;lt;/ref&amp;gt;. &lt;br /&gt;
[[Image:Bombyx mori.jpg|thumb|upright=1|&#039;&#039;Bombyx mori&#039;&#039;, the silk moth, picture by [https://www.flickr.com/photos/depredator007/2522038240/ Fernando Cuenca]]]&lt;br /&gt;
[[Image:Bombykol.png|thumb|upright=1|Bombykol, a sex pheromone of &#039;&#039;Bombyx mori&#039;&#039;, from [http://pubchem.ncbi.nlm.nih.gov/compound/Bombykol#section=Top PubChem]]]&lt;br /&gt;
&lt;br /&gt;
==OBP in insects==&lt;br /&gt;
==== OBP Function ====&lt;br /&gt;
Despite five decades of intensive research, the exact roles of OBP and the mechanism by which the odorant receptor (OR) is activated are still in dispute &amp;lt;ref name=&amp;quot;Leal&amp;quot;&amp;gt;DOI: 10.1146/annurev-ento-120811-153635&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI: 10.1007/s00359-009-0461-4&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;A few functions have been suggested for OBP:&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
1. Solubelizing the odorant molecule and its transportation in the sensillar lymph.&lt;br /&gt;
&lt;br /&gt;
2. Protecting the odorant molecule from the odorant degrading enzymes, in the sensillar lymph.&lt;br /&gt;
&lt;br /&gt;
3. Activating of the odorant receptor on the dendrite membrane, by the odorant-OBP complex.&lt;br /&gt;
&lt;br /&gt;
4. Mediating the deactivation of the odorant molecule after the activation of the receptor.&lt;br /&gt;
&lt;br /&gt;
5. An organic anion (the protein has 9 negative charges).&lt;br /&gt;
&lt;br /&gt;
Of all, the first role of OBP as an odorant solubilizer and carrier is generally accepted.&lt;br /&gt;
&lt;br /&gt;
In order to explain the structure and function of these fascinating proteins, this page will further focus on a particular OBP - the well investigated &#039;&#039;[http://en.wikipedia.org/wiki/Bombyx_mori Bombyx mori]&#039;&#039; PBP: [http://www.uniprot.org/uniprot/P34174 BmorPBP].&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
====&#039;&#039;Bombyx mori&#039;&#039; BmorPBP (lets talk about sex..)====&lt;br /&gt;
&amp;lt;StructureSection load=&#039;1ls8&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;&#039;&#039;Bombyx mori&#039;&#039; PBP -BmorPBP scene=&#039;&#039;&amp;gt;&lt;br /&gt;
Pheromone binding proteins (PBPs) are specialized members of the insect odorant-binding protein (OBP) super-family.   &lt;br /&gt;
The main purpose in the dult moth&#039;s short life is reproduction. In fact, the male and female moth invest all of theire energy and resourses hoping to reach to the ultimate goal-  mating. This long journey begins when the female moth releases a sex pheromone, usualy in specific hours in the night &amp;lt;ref&amp;gt;doi: 10.1007/BF01946910&amp;lt;/ref&amp;gt;. &lt;br /&gt;
BmorPBP was first identified in the &#039;&#039;B. mori&#039;&#039; male antennae by Krieger et al. in 1996 &amp;lt;ref&amp;gt;doi: 10.1016/0965-1748(95)00096-8&amp;lt;/ref&amp;gt;, as the PBP of the first sex pheromone discovered ((E,Z)-10,12-hexadecadienol, or [http://en.wikipedia.org/wiki/Bombykol Bombykol]). The male moth needs to detect minute amount of the pheromone in the air, while following turbulent wind-born pheromone trail and response fast (experimental evidence shows a response time of 0.5 seconds&amp;lt;ref&amp;gt;doi: 10.1038/293161a0&amp;lt;/ref&amp;gt;). &lt;br /&gt;
&lt;br /&gt;
====BmorPBP structure and function====&lt;br /&gt;
The protein has 164 amino acids that forms 6-7 alpha helices (depends on the protein conformation). Three &amp;lt;font color=#FFEF00&amp;gt;&amp;lt;b&amp;gt;disulfide bonds&amp;lt;/b&amp;gt;&amp;lt;/font&amp;gt; formed by &amp;lt;scene name=&#039;68/683383/Cysteins6/1&#039;&amp;gt;6 cystein &amp;lt;/scene&amp;gt; residues tied four helices, and form the compact and robust structure of the protein. As expected from a soluble protein, its surface is covered with &amp;lt;scene name=&#039;68/683383/Charged_resid/1&#039;&amp;gt;charged residues&amp;lt;/scene&amp;gt;, which allows it to make interactions with the water molecule and solubilize in the sensillar lymph.&lt;br /&gt;
&lt;br /&gt;
====BmorPBP - ligand binding====&lt;br /&gt;
The protein natural ligand is the moth pheromone &amp;lt;scene name=&#039;68/683383/Bombykol_ligand_in_2p71/1&#039;&amp;gt;Bombykol&amp;lt;/scene&amp;gt;. However, it was demonstrated that other molecules can also bound to the protein cavity &amp;lt;ref&amp;gt;doi: 10.1016/j.str.2007.07.013&amp;lt;/ref&amp;gt;. The interaction with the ligand is being made by 4 alpha helices 1, 4, 5 and 6 in the core of the protein, which form the binding cavity &amp;lt;ref&amp;gt;doi: 10.1016/S1074-5521(00)00078-8&amp;lt;/ref&amp;gt;.    &lt;br /&gt;
Inside the binding cavity, &amp;lt;scene name=&#039;68/683383/Residues_interacting/1&#039;&amp;gt;non-charged residues&amp;lt;/scene&amp;gt; are interacting with the pheromone, mainly by van der waals bounds. Out of those residues, some are conserved across OBP of lepidopteran (&amp;lt;font color=#8DB600&amp;gt;&amp;lt;b&amp;gt;in green&amp;lt;/b&amp;gt;&amp;lt;/font&amp;gt;), and the rest are conserved in lepidopteran PBP only (&amp;lt;font color=#318CE7&amp;gt;&amp;lt;b&amp;gt;in light blue&amp;lt;/b&amp;gt;&amp;lt;/font&amp;gt;).   &lt;br /&gt;
In addition, the hydroxyl group of the pheromone bombykol forms a &amp;lt;scene name=&#039;68/683383/Ser56_interaction_with_oxg/2&#039;&amp;gt;hydrogen bond with the sidechain of Ser56&amp;lt;/scene&amp;gt;, Ser56 in red, oxygens are in purple (O–O distance of 2.8 Å).  &lt;br /&gt;
&lt;br /&gt;
====Protein conformations====&lt;br /&gt;
[[Image:A -B forms without ligand.png|thumb|upright=2|The A and B forms without ligand (PDB IDs: [[1gm0]] and [[1ls8]]).]]&lt;br /&gt;
BmorPBP has two conformations: The &#039;&#039;&#039;&amp;quot;closed form&amp;quot; (A)&#039;&#039;&#039; and the &#039;&#039;&amp;quot;open form&amp;quot; (B)&#039;&#039;&amp;lt;ref&amp;gt;DOI: 10.1074/jbc.274.43.30950&amp;lt;/ref&amp;gt;. The bombykol and the alpha-helix loacated in the c-terminus of the protein compete for the binding site: when the c-terminus is inside the binding cavity it get&#039;s an alpha helix shape, and the protien is in its &amp;quot;close form&amp;quot; (B), whereas in the &amp;quot;open form&amp;quot; (A) the c-terminus is outside of the protein and has no defined secondary structure. Binding experiments have shown that the B-form binds 15 times higher than the A-form &amp;lt;ref&amp;gt;doi: 10.1073/pnas.0501447102&amp;lt;/ref&amp;gt;, therefore considered to be the carrier of the pheromone. The complex of the A-form and the pheromone, is then considered the form that activates the receptor.         &lt;br /&gt;
&lt;br /&gt;
The &amp;lt;scene name=&#039;68/683383/1dqe-1gm0/2&#039;&amp;gt;transition between the two conformation&amp;lt;/scene&amp;gt; is both pH and ligand dependent &amp;lt;ref&amp;gt;doi: 10.1073?pnas.251532998&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI: 10.1016/j.bbrc.2005.07.176&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;doi: 10.1073/pnas.1317706110&amp;lt;/ref&amp;gt;. In short, the B-form (c-terminus outside the cavity) occurs only at neutral pH and in the presence of the ligand. The A-form (c-terminus inside the cavity) occurs at both low and neutral pH, yet at the latter only in the absence of ligand. Therefore, in neutral pH when the ligand is binding to the protein in its A-form, the complex formation causes a change in conformation to the B-form. However, both A and B forms are equally distributed in the lymph.&lt;br /&gt;
{{Button Toggle AnimationOnPause}}&lt;br /&gt;
   &lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Conformation transition mechanism:&#039;&#039;&#039;&lt;br /&gt;
The c-terminus of the protein bears mostly non-polar amino acids. Yet on the surface of the helix there are three exceptional amino acids: Asp-132, Glu-137, and Glu-141, which are conserved in moth PBP &amp;lt;ref&amp;gt;doi: 10.1016/j.bbrc.2005.07.176&amp;lt;/ref&amp;gt;. Of these, residues &amp;lt;scene name=&#039;68/683383/Bombykol_ligand_in_2p71/2&#039;&amp;gt;Asp-132&amp;lt;/scene&amp;gt; (and Glu-141, if present) triggers the formation of the alpha-helix upon protonation at low pH. This causes the &amp;lt;scene name=&#039;68/683383/1dqe_2fjy-bom/1&#039;&amp;gt;ejaculation of the ligand from the binding pocket&amp;lt;/scene&amp;gt;, which is replaced by the formatted alpha helix&amp;lt;ref&amp;gt;doi: 10.1016/j.bbrc&amp;lt;/ref&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
{{Button Toggle AnimationOnPause}}&lt;br /&gt;
&lt;br /&gt;
Studies on other Lepidopterans that show a similar pH dependent conformation suggests that this model is a general model moth PBP&amp;lt;ref name=&amp;quot;Leal&amp;quot; /&amp;gt;. &lt;br /&gt;
Nonetheless, the enormous diversity among insects is not allowing us to assume this model is true for all insects&#039; OBPs.&lt;br /&gt;
[[Image:N model extended.png|thumb|upright=2.5|Figure 1. The events prior the neuron excitation, following the &amp;quot;N model&amp;quot; suggested by Kaissling (2009)&amp;lt;ref name=&amp;quot;Kaissling 2009&amp;quot; /&amp;gt;: The pheromone enters the sensillar lymph through a pore in cuticle. The pheromone can then be degraded by the ODE (1) -or- bind to the A and B protein forms (2a and 2b, respectively).  When the complex arrives at the low pH near the membrane, the transition is in favor of the A-form, (3) in which the -c-terminus is forming an alpha helix inside the binding cavity, pushing out the pheromone. The activation of the complex of odorant receptor and coreceptor (OR:OR-CO), is induced by ether the complex of pheromone-PBP, or by the pheromone alone (5, two options). The B-form can also act as a scavenger, as it mediates the deactivation of the pheromone (6) and releases it to the ODE (6)]] &lt;br /&gt;
====Receptor activation====&lt;br /&gt;
Two theories have been proposed for the activation of the odorant receptors located on the dendrtirte membrane. One theory suggests that the pheromone-PBP complex is needed for the receptor activation, while the second theory argue that the pheromone itself is sufficient for the activation of the receptor.   &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;Activation by the pheromone alone&#039;&#039;&#039; &lt;br /&gt;
This model is supported by the pH dependent conformation transition, that is described above. The bulk of the sensillar lymph is in neutral pH (6.5-7), while environment near the dendrite membrane bears a low pH (4.5), due to the negative charges on the surface of the membrane &amp;lt;ref&amp;gt;DOI: 10.1016/0040-8166(84)90004-1&amp;lt;/ref&amp;gt;, which cause the accumulation of positively charged kations near the membrane surface (20-50 nm)&amp;lt;ref name=&amp;quot;Kaissling 2009&amp;quot; /&amp;gt;. According to this model (illustrated in [[figure 1]]), the pheromone is entering the sensillar lymph through a pore in the cuticle, then it can be either degraded by odorant degrading enzymes (ODE) or bind to a PBP (of both forms). Once the complex is arriving to the low pH environment near the dendrite membrane the PBP will shift to the A-form, thereby ejaculating the ligand from the binding pocket, allowing it to activate the OR:CO-OR complex and the cellular signal transduction begins.      &lt;br /&gt;
 &lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;Activation by the complex pheromone-PBP&#039;&#039;&#039;&lt;br /&gt;
An alternative mode of action was proposed for the receptor activation in Drosophila, where it was found that the complex of pheromone-PBP is required for the activity of pheromone-sensitive neurons &amp;lt;ref&amp;gt;DOI: 10.1016/j.neuron.2004.12.031&amp;lt;ref/&amp;gt;&amp;lt;ref&amp;gt;doi: 10.1016/j.cell.2008.04.046&amp;lt;ref/&amp;gt; &lt;br /&gt;
&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== See also == &lt;br /&gt;
*[[Odorant_binding_protein_3D_structures]]&lt;br /&gt;
*[[Chemical communication in arthropods]]&lt;br /&gt;
*[[Pheromone binding protein]]&lt;br /&gt;
== References ==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Nurit Eliash</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Odorant_binding_protein&amp;diff=2368531</id>
		<title>Odorant binding protein</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Odorant_binding_protein&amp;diff=2368531"/>
		<updated>2015-01-28T11:15:22Z</updated>

		<summary type="html">&lt;p&gt;Nurit Eliash: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;==Introduction==&lt;br /&gt;
Odorant-binding protein (OBP) are soluble proteins which involve in the processes of odorant detection in the olfactory sensilla &amp;lt;ref name=&amp;quot;Pelosi 2014&amp;quot;&amp;gt;doi: 10.3389/fphys.2014.00320&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Though functionally same, vertebrates and insects OBP have different origin and structure.&lt;br /&gt;
OBPs are important for insect olfaction. For instance, OBP76a (LUSH) in the fly [http://en.wikipedia.org/wiki/Drosophila_melanogaster &#039;&#039;Drosophila melanogaster&#039;&#039;] is required for the detection of the pheromone vaccenyl acetate &amp;lt;ref name=&amp;quot;Xu 2005&amp;quot;&amp;gt;doi: 10.1016/j.neuron.2004.12.031&amp;lt;/ref&amp;gt; and has been proven to adopt a conformation that activates the odorant receptor &amp;lt;ref name=&amp;quot;Laughlin 2008&amp;quot;&amp;gt;doi: 10.1016/j.cell.2008.04.046&amp;lt;/ref&amp;gt;. &lt;br /&gt;
[[Image:Bombyx mori.jpg|thumb|upright=1|&#039;&#039;Bombyx mori&#039;&#039;, the silk moth, picture by [https://www.flickr.com/photos/depredator007/2522038240/ Fernando Cuenca]]]&lt;br /&gt;
[[Image:Bombykol.png|thumb|upright=1|Bombykol, a sex pheromone of &#039;&#039;Bombyx mori&#039;&#039;, from [http://pubchem.ncbi.nlm.nih.gov/compound/Bombykol#section=Top PubChem]]]&lt;br /&gt;
&lt;br /&gt;
==OBP in insects==&lt;br /&gt;
==== OBP Function ====&lt;br /&gt;
Despite five decades of intensive research, the exact roles of OBP and the mechanism by which the odorant receptor (OR) is activated are still in dispute &amp;lt;ref name=&amp;quot;Leal&amp;quot;&amp;gt;DOI: 10.1146/annurev-ento-120811-153635&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI: 10.1007/s00359-009-0461-4&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;A few functions have been suggested for OBP:&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
1. Solubelizing the odorant molecule and its transportation in the sensillar lymph.&lt;br /&gt;
&lt;br /&gt;
2. Protecting the odorant molecule from the odorant degrading enzymes, in the sensillar lymph.&lt;br /&gt;
&lt;br /&gt;
3. Activating of the odorant receptor on the dendrite membrane, by the odorant-OBP complex.&lt;br /&gt;
&lt;br /&gt;
4. Mediating the deactivation of the odorant molecule after the activation of the receptor.&lt;br /&gt;
&lt;br /&gt;
5. An organic anion (the protein has 9 negative charges).&lt;br /&gt;
&lt;br /&gt;
Of all, the first role of OBP as an odorant solubilizer and carrier is generally accepted.&lt;br /&gt;
&lt;br /&gt;
In order to explain the structure and function of these fascinating proteins, this page will further focus on a particular OBP - the well investigated &#039;&#039;[http://en.wikipedia.org/wiki/Bombyx_mori Bombyx mori]&#039;&#039; PBP: [http://www.uniprot.org/uniprot/P34174 BmorPBP].&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
====&#039;&#039;Bombyx mori&#039;&#039; BmorPBP (lets talk about sex..)====&lt;br /&gt;
&amp;lt;StructureSection load=&#039;1ls8&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;&#039;&#039;Bombyx mori&#039;&#039; PBP -BmorPBP scene=&#039;&#039;&amp;gt;&lt;br /&gt;
Pheromone binding proteins (PBPs) are specialized members of the insect odorant-binding protein (OBP) super-family.   &lt;br /&gt;
The main purpose in the dult moth&#039;s short life is reproduction. In fact, the male and female moth invest all of theire energy and resourses hoping to reach to the ultimate goal-  mating. This long journey begins when the female moth releases a sex pheromone, usualy in specific hours in the night &amp;lt;ref&amp;gt;doi: 10.1007/BF01946910&amp;lt;/ref&amp;gt;. &lt;br /&gt;
BmorPBP was first identified in the &#039;&#039;B. mori&#039;&#039; male antennae by Krieger et al. in 1996 &amp;lt;ref&amp;gt;doi: 10.1016/0965-1748(95)00096-8&amp;lt;/ref&amp;gt;, as the PBP of the first sex pheromone discovered ((E,Z)-10,12-hexadecadienol, or [http://en.wikipedia.org/wiki/Bombykol Bombykol]). The male moth needs to detect minute amount of the pheromone in the air, while following turbulent wind-born pheromone trail and response fast (experimental evidence shows a response time of 0.5 seconds&amp;lt;ref&amp;gt;doi: 10.1038/293161a0&amp;lt;/ref&amp;gt;). &lt;br /&gt;
&lt;br /&gt;
====BmorPBP structure and function====&lt;br /&gt;
The protein has 164 amino acids that forms 6-7 alpha helices (depends on the protein conformation). Three &amp;lt;font color=#FFEF00&amp;gt;&amp;lt;b&amp;gt;disulfide bonds&amp;lt;/b&amp;gt;&amp;lt;/font&amp;gt; formed by &amp;lt;scene name=&#039;68/683383/Cysteins6/1&#039;&amp;gt;6 cystein &amp;lt;/scene&amp;gt; residues tied four helices, and form the compact and robust structure of the protein. As expected from a soluble protein, its surface is covered with &amp;lt;scene name=&#039;68/683383/Charged_resid/1&#039;&amp;gt;charged residues&amp;lt;/scene&amp;gt;, which allows it to make interactions with the water molecule and solubilize in the sensillar lymph.&lt;br /&gt;
&lt;br /&gt;
====BmorPBP - ligand binding====&lt;br /&gt;
The protein natural ligand is the moth pheromone &amp;lt;scene name=&#039;68/683383/Bombykol_ligand_in_2p71/1&#039;&amp;gt;Bombykol&amp;lt;/scene&amp;gt;. However, it was demonstrated that other molecules can also bound to the protein cavity &amp;lt;ref&amp;gt;doi: 10.1016/j.str.2007.07.013&amp;lt;/ref&amp;gt;. The interaction with the ligand is being made by 4 alpha helices 1, 4, 5 and 6 in the core of the protein, which form the binding cavity &amp;lt;ref&amp;gt;doi: 10.1016/S1074-5521(00)00078-8&amp;lt;/ref&amp;gt;.    &lt;br /&gt;
Inside the binding cavity, &amp;lt;scene name=&#039;68/683383/Residues_interacting/1&#039;&amp;gt;non-charged residues&amp;lt;/scene&amp;gt; are interacting with the pheromone, mainly by van der waals bounds. Out of those residues, some are conserved across OBP of lepidopteran (&amp;lt;font color=#8DB600&amp;gt;&amp;lt;b&amp;gt;in green&amp;lt;/b&amp;gt;&amp;lt;/font&amp;gt;), and the rest are conserved in lepidopteran PBP only (&amp;lt;font color=#318CE7&amp;gt;&amp;lt;b&amp;gt;in light blue&amp;lt;/b&amp;gt;&amp;lt;/font&amp;gt;).   &lt;br /&gt;
In addition, the hydroxyl group of the pheromone bombykol forms a &amp;lt;scene name=&#039;68/683383/Ser56_interaction_with_oxg/2&#039;&amp;gt;hydrogen bond with the sidechain of Ser56&amp;lt;/scene&amp;gt;, Ser56 in red, oxygens are in purple (O–O distance of 2.8 Å).  &lt;br /&gt;
&lt;br /&gt;
====Protein conformations====&lt;br /&gt;
[[Image:A -B forms without ligand.png|thumb|upright=2|The A and B forms without ligand (PDB IDs: [[1gm0]] and [[1ls8]]).]]&lt;br /&gt;
BmorPBP has two conformations: The &amp;quot;closed form&amp;quot; (A) and the &amp;quot;open form&amp;quot; (B)&amp;lt;ref&amp;gt;DOI: 10.1074/jbc.274.43.30950&amp;lt;/ref&amp;gt;. The bombykol and the alpha-helix loacated in the c-terminus of the protein compete for the binding site: when the c-terminus is inside the binding cavity it get&#039;s an alpha helix shape, and the protien is in its &amp;quot;close form&amp;quot; (B), whereas in the &amp;quot;open form&amp;quot; (A) the c-terminus is outside of the protein and has no defined secondary structure. Binding experiments have shown that the B-form binds 15 times higher than the A-form &amp;lt;ref&amp;gt;doi: 10.1073/pnas.0501447102&amp;lt;/ref&amp;gt;, therefore considered to be the carrier of the pheromone. The complex of the A-form and the pheromone, is then considered the form that activates the receptor.         &lt;br /&gt;
&lt;br /&gt;
The &amp;lt;scene name=&#039;68/683383/1dqe-1gm0/2&#039;&amp;gt;transition between the two conformation&amp;lt;/scene&amp;gt; is both pH and ligand dependent &amp;lt;ref&amp;gt;doi: 10.1073?pnas.251532998&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI: 10.1016/j.bbrc.2005.07.176&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;doi: 10.1073/pnas.1317706110&amp;lt;/ref&amp;gt;. In short, the B-form (c-terminus outside the cavity) occurs only at neutral pH and in the presence of the ligand. The A-form (c-terminus inside the cavity) occurs at both low and neutral pH, yet at the latter only in the absence of ligand. Therefore, in neutral pH when the ligand is binding to the protein in its A-form, the complex formation causes a change in conformation to the B-form. However, both A and B forms are equally distributed in the lymph.&lt;br /&gt;
{{Button Toggle AnimationOnPause}}&lt;br /&gt;
   &lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Conformation transition mechanism:&#039;&#039;&#039;&lt;br /&gt;
The c-terminus of the protein bears mostly non-polar amino acids. Yet on the surface of the helix there are three exceptional amino acids: Asp-132, Glu-137, and Glu-141, which are conserved in moth PBP &amp;lt;ref&amp;gt;doi: 10.1016/j.bbrc.2005.07.176&amp;lt;/ref&amp;gt;. Of these, residues &amp;lt;scene name=&#039;68/683383/Bombykol_ligand_in_2p71/2&#039;&amp;gt;Asp-132&amp;lt;/scene&amp;gt; (and Glu-141, if present) triggers the formation of the alpha-helix upon protonation at low pH. This causes the &amp;lt;scene name=&#039;68/683383/1dqe_2fjy-bom/1&#039;&amp;gt;ejaculation of the ligand from the binding pocket&amp;lt;/scene&amp;gt;, which is replaced by the formatted alpha helix&amp;lt;ref&amp;gt;doi: 10.1016/j.bbrc&amp;lt;/ref&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
{{Button Toggle AnimationOnPause}}&lt;br /&gt;
&lt;br /&gt;
Studies on other Lepidopterans that show a similar pH dependent conformation suggests that this model is a general model moth PBP&amp;lt;ref name=&amp;quot;Leal&amp;quot; /&amp;gt;. &lt;br /&gt;
Nonetheless, the enormous diversity among insects is not allowing us to assume this model is true for all insects&#039; OBPs.&lt;br /&gt;
[[Image:N model extended.png|thumb|upright=2.5|Figure 1. The events prior the neuron excitation, following the &amp;quot;N model&amp;quot; suggested by Kaissling (2009)&amp;lt;ref name=&amp;quot;Kaissling 2009&amp;quot; /&amp;gt;: The pheromone enters the sensillar lymph through a pore in cuticle. The pheromone can then be degraded by the ODE (1) -or- bind to the A and B protein forms (2a and 2b, respectively).  When the complex arrives at the low pH near the membrane, the transition is in favor of the A-form, (3) in which the -c-terminus is forming an alpha helix inside the binding cavity, pushing out the pheromone. The activation of the complex of odorant receptor and coreceptor (OR:OR-CO), is induced by ether the complex of pheromone-PBP, or by the pheromone alone (5, two options). The B-form can also act as a scavenger, as it mediates the deactivation of the pheromone (6) and releases it to the ODE (6)]] &lt;br /&gt;
====Receptor activation====&lt;br /&gt;
Two theories have been proposed for the activation of the odorant receptors located on the dendrtirte membrane. One theory suggests that the pheromone-PBP complex is needed for the receptor activation, while the second theory argue that the pheromone itself is sufficient for the activation of the receptor.   &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;Activation by the pheromone alone&#039;&#039;&#039; &lt;br /&gt;
This model is supported by the pH dependent conformation transition, that is described above. The bulk of the sensillar lymph is in neutral pH (6.5-7), while environment near the dendrite membrane bears a low pH (4.5), due to the negative charges on the surface of the membrane &amp;lt;ref&amp;gt;DOI: 10.1016/0040-8166(84)90004-1&amp;lt;/ref&amp;gt;, which cause the accumulation of positively charged kations near the membrane surface (20-50 nm)&amp;lt;ref name=&amp;quot;Kaissling 2009&amp;quot; /&amp;gt;. According to this model (illustrated in [[figure 1]]), the pheromone is entering the sensillar lymph through a pore in the cuticle, then it can be either degraded by odorant degrading enzymes (ODE) or bind to a PBP (of both forms). Once the complex is arriving to the low pH environment near the dendrite membrane the PBP will shift to the A-form, thereby ejaculating the ligand from the binding pocket, allowing it to activate the OR:CO-OR complex and the cellular signal transduction begins.      &lt;br /&gt;
 &lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;Activation by the complex pheromone-PBP&#039;&#039;&#039;&lt;br /&gt;
An alternative mode of action was proposed for the receptor activation in Drosophila, where it was found that the complex of pheromone-PBP is required for the activity of pheromone-sensitive neurons &amp;lt;ref&amp;gt;DOI: 10.1016/j.neuron.2004.12.031&amp;lt;ref/&amp;gt;&amp;lt;ref&amp;gt;doi: 10.1016/j.cell.2008.04.046&amp;lt;ref/&amp;gt; &lt;br /&gt;
&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== See also == &lt;br /&gt;
*[[Odorant_binding_protein_3D_structures]]&lt;br /&gt;
*[[Chemical communication in arthropods]]&lt;br /&gt;
*[[Pheromone binding protein]]&lt;br /&gt;
== References ==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Nurit Eliash</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Odorant_binding_protein&amp;diff=2368522</id>
		<title>Odorant binding protein</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Odorant_binding_protein&amp;diff=2368522"/>
		<updated>2015-01-28T11:08:11Z</updated>

		<summary type="html">&lt;p&gt;Nurit Eliash: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;==Introduction==&lt;br /&gt;
Odorant-binding protein (OBP) are soluble proteins which involve in the processes of odorant detection in the olfactory sensilla &amp;lt;ref name=&amp;quot;Pelosi 2014&amp;quot;&amp;gt;doi: 10.3389/fphys.2014.00320&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Though functionally same, vertebrates and insects OBP have different origin and structure.&lt;br /&gt;
OBPs are important for insect olfaction. For instance, OBP76a (LUSH) in the fly [http://en.wikipedia.org/wiki/Drosophila_melanogaster &#039;&#039;Drosophila melanogaster&#039;&#039;] is required for the detection of the pheromone vaccenyl acetate &amp;lt;ref name=&amp;quot;Xu 2005&amp;quot;&amp;gt;doi: 10.1016/j.neuron.2004.12.031&amp;lt;/ref&amp;gt; and has been proven to adopt a conformation that activates the odorant receptor &amp;lt;ref name=&amp;quot;Laughlin 2008&amp;quot;&amp;gt;doi: 10.1016/j.cell.2008.04.046&amp;lt;/ref&amp;gt;. &lt;br /&gt;
[[Image:Bombyx mori.jpg|thumb|upright=1|&#039;&#039;Bombyx mori&#039;&#039;, the silk moth, picture by [https://www.flickr.com/photos/depredator007/2522038240/ Fernando Cuenca]]]&lt;br /&gt;
[[Image:Bombykol.png|thumb|upright=1|Bombykol, a sex pheromone of &#039;&#039;Bombyx mori&#039;&#039;, from [http://pubchem.ncbi.nlm.nih.gov/compound/Bombykol#section=Top PubChem]]]&lt;br /&gt;
&lt;br /&gt;
==OBP in insects==&lt;br /&gt;
==== OBP Function ====&lt;br /&gt;
Despite five decades of intensive research, the exact roles of OBP and the mechanism by which the odorant receptor (OR) is activated are still in dispute &amp;lt;ref name=&amp;quot;Leal&amp;quot;&amp;gt;DOI: 10.1146/annurev-ento-120811-153635&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI: 10.1007/s00359-009-0461-4&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;A few functions have been suggested for OBP:&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
1. Solubelizing the odorant molecule and its transportation in the sensillar lymph.&lt;br /&gt;
&lt;br /&gt;
2. Protecting the odorant molecule from the odorant degrading enzymes, in the sensillar lymph.&lt;br /&gt;
&lt;br /&gt;
3. Activating of the odorant receptor on the dendrite membrane, by the odorant-OBP complex.&lt;br /&gt;
&lt;br /&gt;
4. Mediating the deactivation of the odorant molecule after the activation of the receptor.&lt;br /&gt;
&lt;br /&gt;
5. An organic anion (the protein has 9 negative charges).&lt;br /&gt;
&lt;br /&gt;
Of all, the first role of OBP as an odorant solubilizer and carrier is generally accepted.&lt;br /&gt;
&lt;br /&gt;
In order to explain the structure and function of these fascinating proteins, this page will further focus on a particular OBP - the well investigated &#039;&#039;[http://en.wikipedia.org/wiki/Bombyx_mori Bombyx mori]&#039;&#039; PBP: [http://www.uniprot.org/uniprot/P34174 BmorPBP].&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
====&#039;&#039;Bombyx mori&#039;&#039; BmorPBP (lets talk about sex..)====&lt;br /&gt;
&amp;lt;StructureSection load=&#039;1ls8&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;&#039;&#039;Bombyx mori&#039;&#039; PBP -BmorPBP scene=&#039;&#039;&amp;gt;&lt;br /&gt;
Pheromone binding proteins (PBPs) are specialized members of the insect odorant-binding protein (OBP) super-family.   &lt;br /&gt;
The main purpose in the dult moth&#039;s short life is reproduction. In fact, the male and female moth invest all of theire energy and resourses hoping to reach to the ultimate goal-  mating. This long journey begins when the female moth releases a sex pheromone, usualy in specific hours in the night &amp;lt;ref&amp;gt;doi: 10.1007/BF01946910&amp;lt;/ref&amp;gt;. &lt;br /&gt;
BmorPBP was first identified in the &#039;&#039;B. mori&#039;&#039; male antennae by Krieger et al. in 1996 &amp;lt;ref&amp;gt;doi: 10.1016/0965-1748(95)00096-8&amp;lt;/ref&amp;gt;, as the PBP of the first sex pheromone discovered ((E,Z)-10,12-hexadecadienol, or [http://en.wikipedia.org/wiki/Bombykol Bombykol]). The male moth needs to detect minute amount of the pheromone in the air, while following turbulent wind-born pheromone trail and response fast (experimental evidence shows a response time of 0.5 seconds&amp;lt;ref&amp;gt;doi: 10.1038/293161a0&amp;lt;/ref&amp;gt;). &lt;br /&gt;
&lt;br /&gt;
====BmorPBP structure and function====&lt;br /&gt;
The protein has 164 amino acids that forms 6-7 alpha helices (depends on the protein conformation). Three &amp;lt;font color=#FFEF00&amp;gt;&amp;lt;b&amp;gt;disulfide bonds&amp;lt;/b&amp;gt;&amp;lt;/font&amp;gt; formed by &amp;lt;scene name=&#039;68/683383/Cysteins6/1&#039;&amp;gt;6 cystein &amp;lt;/scene&amp;gt; residues tied four helices, and form the compact and robust structure of the protein. As expected from a soluble protein, its surface is covered with &amp;lt;scene name=&#039;68/683383/Charged_resid/1&#039;&amp;gt;charged residues&amp;lt;/scene&amp;gt;, which allows it to make interactions with the water molecule and solubilize in the sensillar lymph.&lt;br /&gt;
&lt;br /&gt;
====BmorPBP - ligand binding====&lt;br /&gt;
The protein natural ligand is the moth pheromone &amp;lt;scene name=&#039;68/683383/Bombykol_ligand_in_2p71/1&#039;&amp;gt;Bombykol&amp;lt;/scene&amp;gt;. However, it was demonstrated that other molecules can also bound to the protein cavity &amp;lt;ref&amp;gt;doi: 10.1016/j.str.2007.07.013&amp;lt;/ref&amp;gt;. The interaction with the ligand is being made by 4 alpha helices 1, 4, 5 and 6 in the core of the protein, which form the binding cavity &amp;lt;ref&amp;gt;doi: 10.1016/S1074-5521(00)00078-8&amp;lt;/ref&amp;gt;.    &lt;br /&gt;
Inside the binding cavity, &amp;lt;scene name=&#039;68/683383/Residues_interacting/1&#039;&amp;gt;non-charged residues&amp;lt;/scene&amp;gt; are interacting with the pheromone, mainly by van der waals bounds. Out of those residues, some are conserved across OBP of lepidopteran (&amp;lt;font color=#8DB600&amp;gt;&amp;lt;b&amp;gt;in green&amp;lt;/b&amp;gt;&amp;lt;/font&amp;gt;), and the rest are conserved in lepidopteran PBP only (&amp;lt;font color=#318CE7&amp;gt;&amp;lt;b&amp;gt;in light blue&amp;lt;/b&amp;gt;&amp;lt;/font&amp;gt;).   &lt;br /&gt;
In addition, the hydroxyl group of the pheromone bombykol forms a &amp;lt;scene name=&#039;68/683383/Ser56_interaction_with_oxg/2&#039;&amp;gt;hydrogen bond with the sidechain of Ser56&amp;lt;/scene&amp;gt;, Ser56 in red, oxygens are in purple (O–O distance of 2.8 Å).  &lt;br /&gt;
&lt;br /&gt;
====Protein conformations====&lt;br /&gt;
[[Image:A -B forms without ligand.png|thumb|upright=2|The A and B forms without ligand (PDB IDs: [[1gm0]] and [[1ls8]]).]]&lt;br /&gt;
BmorPBP has two conformations: The &amp;quot;open form&amp;quot; (A) and the &amp;quot;close form&amp;quot; (B)&amp;lt;ref&amp;gt;DOI: 10.1074/jbc.274.43.30950&amp;lt;/ref&amp;gt;. The bombykol and the alpha-helix loacated in the c-terminus of the protein compete for the binding site: when the c-terminus is inside the binding cavity it get&#039;s an alpha helix shape, and the protien is in its &amp;quot;close form&amp;quot; (B), whereas in the &amp;quot;open form&amp;quot; (A) the c-terminus is outside of the protein and has no defined secondary structure. Binding experiments have shown that the B-form binds 15 times higher than the A-form &amp;lt;ref&amp;gt;doi: 10.1073/pnas.0501447102&amp;lt;/ref&amp;gt;, therefore considered to be the carrier of the pheromone. The complex of the A-form and the pheromone, is then considered the form that activates the receptor.         &lt;br /&gt;
&lt;br /&gt;
The &amp;lt;scene name=&#039;68/683383/1dqe-1gm0/2&#039;&amp;gt;transition between the two conformation&amp;lt;/scene&amp;gt; is both pH and ligand dependent &amp;lt;ref&amp;gt;doi: 10.1073?pnas.251532998&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI: 10.1016/j.bbrc.2005.07.176&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;doi: 10.1073/pnas.1317706110&amp;lt;/ref&amp;gt;. In short, the B-form (c-terminus outside the cavity) occurs only at neutral pH and in the presence of the ligand. The A-form (c-terminus inside the cavity) occurs at both low and neutral pH, yet at the latter only in the absence of ligand. Therefore, in neutral pH when the ligand is binding to the protein in its A-form, the complex formation causes a change in conformation to the B-form. However, both A and B forms are equally distributed in the lymph.&lt;br /&gt;
{{Button Toggle AnimationOnPause}}&lt;br /&gt;
   &lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Conformation transition mechanism:&#039;&#039;&#039;&lt;br /&gt;
The c-terminus of the protein bears mostly non-polar amino acids. Yet on the surface of the helix there are three exceptional amino acids: Asp-132, Glu-137, and Glu-141, which are conserved in moth PBP &amp;lt;ref&amp;gt;doi: 10.1016/j.bbrc.2005.07.176&amp;lt;/ref&amp;gt;. Of these, residues &amp;lt;scene name=&#039;68/683383/Bombykol_ligand_in_2p71/2&#039;&amp;gt;Asp-132&amp;lt;/scene&amp;gt; (and Glu-141, if present) triggers the formation of the alpha-helix upon protonation at low pH. This causes the &amp;lt;scene name=&#039;68/683383/1dqe_2fjy-bom/1&#039;&amp;gt;ejaculation of the ligand from the binding pocket&amp;lt;/scene&amp;gt;, which is replaced by the formatted alpha helix&amp;lt;ref&amp;gt;doi: 10.1016/j.bbrc&amp;lt;/ref&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
{{Button Toggle AnimationOnPause}}&lt;br /&gt;
&lt;br /&gt;
Studies on other Lepidopterans that show a similar pH dependent conformation suggests that this model is a general model moth PBP&amp;lt;ref name=&amp;quot;Leal&amp;quot; /&amp;gt;. &lt;br /&gt;
Nonetheless, the enormous diversity among insects is not allowing us to assume this model is true for all insects&#039; OBPs.&lt;br /&gt;
[[Image:N model extended.png|thumb|upright=2.5|Figure 1. The events prior the neuron excitation, following the &amp;quot;N model&amp;quot; suggested by Kaissling (2009)&amp;lt;ref name=&amp;quot;Kaissling 2009&amp;quot; /&amp;gt;: The pheromone enters the sensillar lymph through a pore in cuticle. The pheromone can then be degraded by the ODE (1) -or- bind to the A and B protein forms (2a and 2b, respectively).  When the complex arrives at the low pH near the membrane, the transition is in favor of the A-form, (3) in which the -c-terminus is forming an alpha helix inside the binding cavity, pushing out the pheromone. The activation of the complex of odorant receptor and coreceptor (OR:OR-CO), is induced by ether the complex of pheromone-PBP, or by the pheromone alone (5, two options). The B-form can also act as a scavenger, as it mediates the deactivation of the pheromone (6) and releases it to the ODE (6)]] &lt;br /&gt;
====Receptor activation====&lt;br /&gt;
Two theories have been proposed for the activation of the odorant receptors located on the dendrtirte membrane. One theory suggests that the pheromone-PBP complex is needed for the receptor activation, while the second theory argue that the pheromone itself is sufficient for the activation of the receptor.   &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;Activation by the pheromone alone&#039;&#039;&#039; &lt;br /&gt;
This model is supported by the pH dependent conformation transition, that is described above. The bulk of the sensillar lymph is in neutral pH (6.5-7), while environment near the dendrite membrane bears a low pH (4.5), due to the negative charges on the surface of the membrane &amp;lt;ref&amp;gt;DOI: 10.1016/0040-8166(84)90004-1&amp;lt;/ref&amp;gt;, which cause the accumulation of positively charged kations near the membrane surface (20-50 nm)&amp;lt;ref name=&amp;quot;Kaissling 2009&amp;quot; /&amp;gt;. According to this model (illustrated in [[figure 1]]), the pheromone is entering the sensillar lymph through a pore in the cuticle, then it can be either degraded by odorant degrading enzymes (ODE) or bind to a PBP (of both forms). Once the complex is arriving to the low pH environment near the dendrite membrane the PBP will shift to the A-form, thereby ejaculating the ligand from the binding pocket, allowing it to activate the OR:CO-OR complex and the cellular signal transduction begins.      &lt;br /&gt;
 &lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;Activation by the complex pheromone-PBP&#039;&#039;&#039;&lt;br /&gt;
An alternative mode of action was proposed for the receptor activation in Drosophila, where it was found that the complex of pheromone-PBP is required for the activity of pheromone-sensitive neurons &amp;lt;ref&amp;gt;DOI: 10.1016/j.neuron.2004.12.031&amp;lt;ref/&amp;gt;&amp;lt;ref&amp;gt;doi: 10.1016/j.cell.2008.04.046&amp;lt;ref/&amp;gt; &lt;br /&gt;
&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== See also == &lt;br /&gt;
*[[Odorant_binding_protein_3D_structures]]&lt;br /&gt;
*[[Chemical communication in arthropods]]&lt;br /&gt;
*[[Pheromone binding protein]]&lt;br /&gt;
== References ==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Nurit Eliash</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Odorant_binding_protein&amp;diff=2368503</id>
		<title>Odorant binding protein</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Odorant_binding_protein&amp;diff=2368503"/>
		<updated>2015-01-28T11:05:02Z</updated>

		<summary type="html">&lt;p&gt;Nurit Eliash: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;==Introduction==&lt;br /&gt;
Odorant-binding protein (OBP) are soluble proteins which involve in the processes of odorant detection in the olfactory sensilla &amp;lt;ref name=&amp;quot;Pelosi 2014&amp;quot;&amp;gt;doi: 10.3389/fphys.2014.00320&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Though functionally same, vertebrates and insects OBP have different origin and structure.&lt;br /&gt;
OBPs are important for insect olfaction. For instance, OBP76a (LUSH) in the fly [http://en.wikipedia.org/wiki/Drosophila_melanogaster &#039;&#039;Drosophila melanogaster&#039;&#039;] is required for the detection of the pheromone vaccenyl acetate &amp;lt;ref name=&amp;quot;Xu 2005&amp;quot;&amp;gt;doi: 10.1016/j.neuron.2004.12.031&amp;lt;/ref&amp;gt; and has been proven to adopt a conformation that activates the odorant receptor &amp;lt;ref name=&amp;quot;Laughlin 2008&amp;quot;&amp;gt;doi: 10.1016/j.cell.2008.04.046&amp;lt;/ref&amp;gt;. &lt;br /&gt;
[[Image:Bombyx mori.jpg|thumb|upright=1|&#039;&#039;Bombyx mori&#039;&#039;, the silk moth, picture by [https://www.flickr.com/photos/depredator007/2522038240/ Fernando Cuenca]]]&lt;br /&gt;
[[Image:Bombykol.png|thumb|upright=1|Bombykol, a sex pheromone of &#039;&#039;Bombyx mori&#039;&#039;, from [http://pubchem.ncbi.nlm.nih.gov/compound/Bombykol#section=Top PubChem]]]&lt;br /&gt;
&lt;br /&gt;
==OBP in insects==&lt;br /&gt;
==== OBP Function ====&lt;br /&gt;
Despite five decades of intensive research, the exact roles of OBP and the mechanism by which the odorant receptor (OR) is activated are still in dispute &amp;lt;ref name=&amp;quot;Leal&amp;quot;&amp;gt;DOI: 10.1146/annurev-ento-120811-153635&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI: 10.1007/s00359-009-0461-4&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;A few functions have been suggested for OBP:&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
1. Solubelizing the odorant molecule and its transportation in the sensillar lymph.&lt;br /&gt;
&lt;br /&gt;
2. Protecting the odorant molecule from the odorant degrading enzymes, in the sensillar lymph.&lt;br /&gt;
&lt;br /&gt;
3. Activating of the odorant receptor on the dendrite membrane, by the odorant-OBP complex.&lt;br /&gt;
&lt;br /&gt;
4. Mediating the deactivation of the odorant molecule after the activation of the receptor.&lt;br /&gt;
&lt;br /&gt;
5. An organic anion (the protein has 9 negative charges).&lt;br /&gt;
&lt;br /&gt;
Of all, the first role of OBP as an odorant solubilizer and carrier is generally accepted.&lt;br /&gt;
&lt;br /&gt;
In order to explain the structure and function of these fascinating proteins, this page will further focus on a particular OBP - the well investigated &#039;&#039;[http://en.wikipedia.org/wiki/Bombyx_mori Bombyx mori]&#039;&#039; PBP: [http://www.uniprot.org/uniprot/P34174 BmorPBP].&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
====&#039;&#039;Bombyx mori&#039;&#039; BmorPBP (lets talk about sex..)====&lt;br /&gt;
&amp;lt;StructureSection load=&#039;1ls8&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;&#039;&#039;Bombyx mori&#039;&#039; PBP -BmorPBP scene=&#039;&#039;&amp;gt;&lt;br /&gt;
Pheromone binding proteins (PBPs) are specialized members of the insect odorant-binding protein (OBP) super-family.   &lt;br /&gt;
The main purpose in the dult moth&#039;s short life is reproduction. In fact, the male and female moth invest all of theire energy and resourses hoping to reach to the ultimate goal-  mating. This long journey begins when the female moth releases a sex pheromone, usualy in specific hours in the night &amp;lt;ref&amp;gt;doi: 10.1007/BF01946910&amp;lt;/ref&amp;gt;. &lt;br /&gt;
BmorPBP was first identified in the &#039;&#039;B. mori&#039;&#039; male antennae by Krieger et al. in 1996 &amp;lt;ref&amp;gt;doi: 10.1016/0965-1748(95)00096-8&amp;lt;/ref&amp;gt;, as the PBP of the first sex pheromone discovered ((E,Z)-10,12-hexadecadienol, or [http://en.wikipedia.org/wiki/Bombykol Bombykol]). The male moth needs to detect minute amount of the pheromone in the air, while following turbulent wind-born pheromone trail and response fast (experimental evidence shows a response time of 0.5 seconds&amp;lt;ref&amp;gt;doi: 10.1038/293161a0&amp;lt;/ref&amp;gt;). &lt;br /&gt;
&lt;br /&gt;
====BmorPBP structure and function====&lt;br /&gt;
The protein has 164 amino acids that forms 6-7 alpha helices (depends on the protein conformation). Three &amp;lt;font color=#FFEF00&amp;gt;&amp;lt;b&amp;gt;disulfide bonds&amp;lt;/b&amp;gt;&amp;lt;/font&amp;gt; formed by &amp;lt;scene name=&#039;68/683383/Cysteins6/1&#039;&amp;gt;6 cystein &amp;lt;/scene&amp;gt; residues tied four helices, and form the compact and robust structure of the protein. As expected from a soluble protein, its surface is covered with &amp;lt;scene name=&#039;68/683383/Charged_residues/1&#039;&amp;gt;charged residues&amp;lt;/scene&amp;gt;, which allows it to make interactions with the water molecule and solubilize in the sensillar lymph.&lt;br /&gt;
&lt;br /&gt;
====BmorPBP - ligand binding====&lt;br /&gt;
The protein natural ligand is the moth pheromone &amp;lt;scene name=&#039;68/683383/Bombykol_ligand_in_2p71/1&#039;&amp;gt;Bombykol&amp;lt;/scene&amp;gt;. However, it was demonstrated that other molecules can also bound to the protein cavity &amp;lt;ref&amp;gt;doi: 10.1016/j.str.2007.07.013&amp;lt;/ref&amp;gt;. The interaction with the ligand is being made by 4 alpha helices 1, 4, 5 and 6 in the core of the protein, which form the binding cavity &amp;lt;ref&amp;gt;doi: 10.1016/S1074-5521(00)00078-8&amp;lt;/ref&amp;gt;.    &lt;br /&gt;
Inside the binding cavity, &amp;lt;scene name=&#039;68/683383/Residues_interacting/1&#039;&amp;gt;non-charged residues&amp;lt;/scene&amp;gt; are interacting with the pheromone, mainly by van der waals bounds. Out of those residues, some are conserved across OBP of lepidopteran (&amp;lt;font color=#8DB600&amp;gt;&amp;lt;b&amp;gt;in green&amp;lt;/b&amp;gt;&amp;lt;/font&amp;gt;), and the rest are conserved in lepidopteran PBP only (&amp;lt;font color=#318CE7&amp;gt;&amp;lt;b&amp;gt;in light blue&amp;lt;/b&amp;gt;&amp;lt;/font&amp;gt;).   &lt;br /&gt;
In addition, the hydroxyl group of the pheromone bombykol forms a &amp;lt;scene name=&#039;68/683383/Ser56_interaction_with_oxg/2&#039;&amp;gt;hydrogen bond with the sidechain of Ser56&amp;lt;/scene&amp;gt;, Ser56 in red, oxygens are in purple (O–O distance of 2.8 Å).  &lt;br /&gt;
&lt;br /&gt;
====Protein conformations====&lt;br /&gt;
[[Image:A -B forms without ligand.png|thumb|upright=2|The A and B forms without ligand (PDB IDs: [[1gm0]] and [[1ls8]]).]]&lt;br /&gt;
BmorPBP has two conformations: The &amp;quot;open form&amp;quot; (A) and the &amp;quot;close form&amp;quot; (B)&amp;lt;ref&amp;gt;DOI: 10.1074/jbc.274.43.30950&amp;lt;/ref&amp;gt;. The bombykol and the alpha-helix loacated in the c-terminus of the protein compete for the binding site: when the c-terminus is inside the binding cavity it get&#039;s an alpha helix shape, and the protien is in its &amp;quot;close form&amp;quot; (B), whereas in the &amp;quot;open form&amp;quot; (A) the c-terminus is outside of the protein and has no defined secondary structure. Binding experiments have shown that the B-form binds 15 times higher than the A-form &amp;lt;ref&amp;gt;doi: 10.1073/pnas.0501447102&amp;lt;/ref&amp;gt;, therefore considered to be the carrier of the pheromone. The complex of the A-form and the pheromone, is then considered the form that activates the receptor.         &lt;br /&gt;
&lt;br /&gt;
The &amp;lt;scene name=&#039;68/683383/1dqe-1gm0/2&#039;&amp;gt;transition between the two conformation&amp;lt;/scene&amp;gt; is both pH and ligand dependent &amp;lt;ref&amp;gt;doi: 10.1073?pnas.251532998&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI: 10.1016/j.bbrc.2005.07.176&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;doi: 10.1073/pnas.1317706110&amp;lt;/ref&amp;gt;. In short, the B-form (c-terminus outside the cavity) occurs only at neutral pH and in the presence of the ligand. The A-form (c-terminus inside the cavity) occurs at both low and neutral pH, yet at the latter only in the absence of ligand. Therefore, in neutral pH when the ligand is binding to the protein in its A-form, the complex formation causes a change in conformation to the B-form. However, both A and B forms are equally distributed in the lymph.&lt;br /&gt;
{{Button Toggle AnimationOnPause}}&lt;br /&gt;
   &lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Conformation transition mechanism:&#039;&#039;&#039;&lt;br /&gt;
The c-terminus of the protein bears mostly non-polar amino acids. Yet on the surface of the helix there are three exceptional amino acids: Asp-132, Glu-137, and Glu-141, which are conserved in moth PBP &amp;lt;ref&amp;gt;doi: 10.1016/j.bbrc.2005.07.176&amp;lt;/ref&amp;gt;. Of these, residues &amp;lt;scene name=&#039;68/683383/Bombykol_ligand_in_2p71/2&#039;&amp;gt;Asp-132&amp;lt;/scene&amp;gt; (and Glu-141, if present) triggers the formation of the alpha-helix upon protonation at low pH. This causes the &amp;lt;scene name=&#039;68/683383/1dqe_2fjy-bom/1&#039;&amp;gt;ejaculation of the ligand from the binding pocket&amp;lt;/scene&amp;gt;, which is replaced by the formatted alpha helix&amp;lt;ref&amp;gt;doi: 10.1016/j.bbrc&amp;lt;/ref&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
{{Button Toggle AnimationOnPause}}&lt;br /&gt;
&lt;br /&gt;
Studies on other Lepidopterans that show a similar pH dependent conformation suggests that this model is a general model moth PBP&amp;lt;ref name=&amp;quot;Leal&amp;quot; /&amp;gt;. &lt;br /&gt;
Nonetheless, the enormous diversity among insects is not allowing us to assume this model is true for all insects&#039; OBPs.&lt;br /&gt;
[[Image:N model extended.png|thumb|upright=2.5|Figure 1. The events prior the neuron excitation, following the &amp;quot;N model&amp;quot; suggested by Kaissling (2009)&amp;lt;ref name=&amp;quot;Kaissling 2009&amp;quot; /&amp;gt;: The pheromone enters the sensillar lymph through a pore in cuticle. The pheromone can then be degraded by the ODE (1) -or- bind to the A and B protein forms (2a and 2b, respectively).  When the complex arrives at the low pH near the membrane, the transition is in favor of the A-form, (3) in which the -c-terminus is forming an alpha helix inside the binding cavity, pushing out the pheromone. The activation of the complex of odorant receptor and coreceptor (OR:OR-CO), is induced by ether the complex of pheromone-PBP, or by the pheromone alone (5, two options). The B-form can also act as a scavenger, as it mediates the deactivation of the pheromone (6) and releases it to the ODE (6)]] &lt;br /&gt;
====Receptor activation====&lt;br /&gt;
Two theories have been proposed for the activation of the odorant receptors located on the dendrtirte membrane. One theory suggests that the pheromone-PBP complex is needed for the receptor activation, while the second theory argue that the pheromone itself is sufficient for the activation of the receptor.   &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;Activation by the pheromone alone&#039;&#039;&#039; &lt;br /&gt;
This model is supported by the pH dependent conformation transition, that is described above. The bulk of the sensillar lymph is in neutral pH (6.5-7), while environment near the dendrite membrane bears a low pH (4.5), due to the negative charges on the surface of the membrane &amp;lt;ref&amp;gt;DOI: 10.1016/0040-8166(84)90004-1&amp;lt;/ref&amp;gt;, which cause the accumulation of positively charged kations near the membrane surface (20-50 nm)&amp;lt;ref name=&amp;quot;Kaissling 2009&amp;quot; /&amp;gt;. According to this model (illustrated in [[figure 1]]), the pheromone is entering the sensillar lymph through a pore in the cuticle, then it can be either degraded by odorant degrading enzymes (ODE) or bind to a PBP (of both forms). Once the complex is arriving to the low pH environment near the dendrite membrane the PBP will shift to the A-form, thereby ejaculating the ligand from the binding pocket, allowing it to activate the OR:CO-OR complex and the cellular signal transduction begins.      &lt;br /&gt;
 &lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;Activation by the complex pheromone-PBP&#039;&#039;&#039;&lt;br /&gt;
An alternative mode of action was proposed for the receptor activation in Drosophila, where it was found that the complex of pheromone-PBP is required for the activity of pheromone-sensitive neurons &amp;lt;ref&amp;gt;DOI: 10.1016/j.neuron.2004.12.031&amp;lt;ref/&amp;gt;&amp;lt;ref&amp;gt;doi: 10.1016/j.cell.2008.04.046&amp;lt;ref/&amp;gt; &lt;br /&gt;
&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== See also == &lt;br /&gt;
*[[Odorant_binding_protein_3D_structures]]&lt;br /&gt;
*[[Chemical communication in arthropods]]&lt;br /&gt;
*[[Pheromone binding protein]]&lt;br /&gt;
== References ==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Nurit Eliash</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Odorant_binding_protein&amp;diff=2368495</id>
		<title>Odorant binding protein</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Odorant_binding_protein&amp;diff=2368495"/>
		<updated>2015-01-28T11:03:06Z</updated>

		<summary type="html">&lt;p&gt;Nurit Eliash: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;==Introduction==&lt;br /&gt;
Odorant-binding protein (OBP) are soluble proteins which involve in the processes of odorant detection in the olfactory sensilla &amp;lt;ref name=&amp;quot;Pelosi 2014&amp;quot;&amp;gt;doi: 10.3389/fphys.2014.00320&amp;lt;/ref&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Though functionally same, vertebrates and insects OBP have different origin and structure.&lt;br /&gt;
OBPs are important for insect olfaction. For instance, OBP76a (LUSH) in the fly [http://en.wikipedia.org/wiki/Drosophila_melanogaster &#039;&#039;Drosophila melanogaster&#039;&#039;] is required for the detection of the pheromone vaccenyl acetate &amp;lt;ref name=&amp;quot;Xu 2005&amp;quot;&amp;gt;doi: 10.1016/j.neuron.2004.12.031&amp;lt;/ref&amp;gt; and has been proven to adopt a conformation that activates the odorant receptor &amp;lt;ref name=&amp;quot;Laughlin 2008&amp;quot;&amp;gt;doi: 10.1016/j.cell.2008.04.046&amp;lt;/ref&amp;gt;. &lt;br /&gt;
[[Image:Bombyx mori.jpg|thumb|upright=1|&#039;&#039;Bombyx mori&#039;&#039;, the silk moth, picture by [https://www.flickr.com/photos/depredator007/2522038240/ Fernando Cuenca]]]&lt;br /&gt;
[[Image:Bombykol.png|thumb|upright=1|Bombykol, a sex pheromone of &#039;&#039;Bombyx mori&#039;&#039;, from [http://pubchem.ncbi.nlm.nih.gov/compound/Bombykol#section=Top PubChem]]]&lt;br /&gt;
&lt;br /&gt;
==OBP in insects==&lt;br /&gt;
==== OBP Function ====&lt;br /&gt;
Despite five decades of intensive research, the exact roles of OBP and the mechanism by which the odorant receptor (OR) is activated are still in dispute &amp;lt;ref name=&amp;quot;Leal&amp;quot;&amp;gt;DOI: 10.1146/annurev-ento-120811-153635&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI: 10.1007/s00359-009-0461-4&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;A few functions have been suggested for OBP:&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
1. Solubelizing the odorant molecule and its transportation in the sensillar lymph.&lt;br /&gt;
&lt;br /&gt;
2. Protecting the odorant molecule from the odorant degrading enzymes, in the sensillar lymph.&lt;br /&gt;
&lt;br /&gt;
3. Activating of the odorant receptor on the dendrite membrane, by the odorant-OBP complex.&lt;br /&gt;
&lt;br /&gt;
4. Mediating the deactivation of the odorant molecule after the activation of the receptor.&lt;br /&gt;
&lt;br /&gt;
5. An organic anion (the protein has 9 negative charges).&lt;br /&gt;
&lt;br /&gt;
Of all, the first role of OBP as an odorant solubilizer and carrier is generally accepted.&lt;br /&gt;
&lt;br /&gt;
In order to explain the structure and function of these fascinating proteins, this page will further focus on a particular OBP - the well investigated &#039;&#039;[http://en.wikipedia.org/wiki/Bombyx_mori Bombyx mori]&#039;&#039; PBP: [http://www.uniprot.org/uniprot/P34174 BmorPBP].&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
====&#039;&#039;Bombyx mori&#039;&#039; BmorPBP (lets talk about sex..)====&lt;br /&gt;
&amp;lt;StructureSection load=&#039;1ls8&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;&#039;&#039;Bombyx mori&#039;&#039; PBP -BmorPBP scene=&#039;&#039;&amp;gt;&lt;br /&gt;
Pheromone binding proteins (PBPs) are specialized members of the insect odorant-binding protein (OBP) super-family.   &lt;br /&gt;
The main purpose in the dult moth&#039;s short life is reproduction. In fact, the male and female moth invest all of theire energy and resourses hoping to reach to the ultimate goal-  mating. This long journey begins when the female moth releases a sex pheromone, usualy in specific hours in the night &amp;lt;ref&amp;gt;doi: 10.1007/BF01946910&amp;lt;/ref&amp;gt;. &lt;br /&gt;
BmorPBP was first identified in the &#039;&#039;B. mori&#039;&#039; male antennae by Krieger et al. in 1996 &amp;lt;ref&amp;gt;doi: 10.1016/0965-1748(95)00096-8&amp;lt;/ref&amp;gt;, as the PBP of the first sex pheromone discovered ((E,Z)-10,12-hexadecadienol, or [http://en.wikipedia.org/wiki/Bombykol Bombykol]). The male moth needs to detect minute amount of the pheromone in the air, while following turbulent wind-born pheromone trail and response fast (experimental evidence shows a response time of 0.5 seconds&amp;lt;ref&amp;gt;doi: 10.1038/293161a0&amp;lt;/ref&amp;gt;). As the electrical signal transduction after the activation of the odorant receptor are too fast, Kaissling &amp;lt;ref name=&amp;quot;Kaissling 2009&amp;quot;&amp;gt;doi: 10.1007/s00359-009-0461-4&amp;lt;/ref&amp;gt;have suggested that the   &lt;br /&gt;
&lt;br /&gt;
====BmorPBP structure and function====&lt;br /&gt;
The protein has 164 amino acids that forms 6-7 alpha helices (depends on the protein conformation). Three &amp;lt;font color=#FFEF00&amp;gt;&amp;lt;b&amp;gt;disulfide bonds&amp;lt;/b&amp;gt;&amp;lt;/font&amp;gt; formed by &amp;lt;scene name=&#039;68/683383/Cysteins6/1&#039;&amp;gt;6 cystein &amp;lt;/scene&amp;gt; residues tied four helices, and form the compact and robust structure of the protein. As expected from a soluble protein, its surface is covered with &amp;lt;scene name=&#039;68/683383/Charged_residues/1&#039;&amp;gt;charged residues&amp;lt;/scene&amp;gt;, which allows it to make interactions with the water molecule and solubilize in the sensillar lymph.&lt;br /&gt;
&lt;br /&gt;
====BmorPBP - ligand binding====&lt;br /&gt;
The protein natural ligand is the moth pheromone &amp;lt;scene name=&#039;68/683383/Bombykol_ligand_in_2p71/1&#039;&amp;gt;Bombykol&amp;lt;/scene&amp;gt;. However, it was demonstrated that other molecules can also bound to the protein cavity &amp;lt;ref&amp;gt;doi: 10.1016/j.str.2007.07.013&amp;lt;/ref&amp;gt;. The interaction with the ligand is being made by 4 alpha helices 1, 4, 5 and 6 in the core of the protein, which form the binding cavity &amp;lt;ref&amp;gt;doi: 10.1016/S1074-5521(00)00078-8&amp;lt;/ref&amp;gt;.    &lt;br /&gt;
Inside the binding cavity, &amp;lt;scene name=&#039;68/683383/Residues_interacting/1&#039;&amp;gt;non-charged residues&amp;lt;/scene&amp;gt; are interacting with the pheromone, mainly by van der waals bounds. Out of those residues, some are conserved across OBP of lepidopteran (&amp;lt;font color=#8DB600&amp;gt;&amp;lt;b&amp;gt;in green&amp;lt;/b&amp;gt;&amp;lt;/font&amp;gt;), and the rest are conserved in lepidopteran PBP only (&amp;lt;font color=#318CE7&amp;gt;&amp;lt;b&amp;gt;in light blue&amp;lt;/b&amp;gt;&amp;lt;/font&amp;gt;).   &lt;br /&gt;
In addition, the hydroxyl group of the pheromone bombykol forms a &amp;lt;scene name=&#039;68/683383/Ser56_interaction_with_oxg/2&#039;&amp;gt;hydrogen bond with the sidechain of Ser56&amp;lt;/scene&amp;gt;, Ser56 in red, oxygens are in purple (O–O distance of 2.8 Å).  &lt;br /&gt;
&lt;br /&gt;
====Protein conformations====&lt;br /&gt;
[[Image:A -B forms without ligand.png|thumb|upright=2|The A and B forms without ligand (PDB IDs: [[1gm0]] and [[1ls8]]).]]&lt;br /&gt;
BmorPBP has two conformations: The &amp;quot;open form&amp;quot; (A) and the &amp;quot;close form&amp;quot; (B)&amp;lt;ref&amp;gt;DOI: 10.1074/jbc.274.43.30950&amp;lt;/ref&amp;gt;. The bombykol and the alpha-helix loacated in the c-terminus of the protein compete for the binding site: when the c-terminus is inside the binding cavity it get&#039;s an alpha helix shape, and the protien is in its &amp;quot;close form&amp;quot; (B), whereas in the &amp;quot;open form&amp;quot; (A) the c-terminus is outside of the protein and has no defined secondary structure. Binding experiments have shown that the B-form binds 15 times higher than the A-form &amp;lt;ref&amp;gt;doi: 10.1073/pnas.0501447102&amp;lt;/ref&amp;gt;, therefore considered to be the carrier of the pheromone. The complex of the A-form and the pheromone, is then considered the form that activates the receptor.         &lt;br /&gt;
&lt;br /&gt;
The &amp;lt;scene name=&#039;68/683383/1dqe-1gm0/2&#039;&amp;gt;transition between the two conformation&amp;lt;/scene&amp;gt; is both pH and ligand dependent &amp;lt;ref&amp;gt;doi: 10.1073?pnas.251532998&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;DOI: 10.1016/j.bbrc.2005.07.176&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;doi: 10.1073/pnas.1317706110&amp;lt;/ref&amp;gt;. In short, the B-form (c-terminus outside the cavity) occurs only at neutral pH and in the presence of the ligand. The A-form (c-terminus inside the cavity) occurs at both low and neutral pH, yet at the latter only in the absence of ligand. Therefore, in neutral pH when the ligand is binding to the protein in its A-form, the complex formation causes a change in conformation to the B-form. However, both A and B forms are equally distributed in the lymph.&lt;br /&gt;
{{Button Toggle AnimationOnPause}}&lt;br /&gt;
   &lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Conformation transition mechanism:&#039;&#039;&#039;&lt;br /&gt;
The c-terminus of the protein bears mostly non-polar amino acids. Yet on the surface of the helix there are three exceptional amino acids: Asp-132, Glu-137, and Glu-141, which are conserved in moth PBP &amp;lt;ref&amp;gt;doi: 10.1016/j.bbrc.2005.07.176&amp;lt;/ref&amp;gt;. Of these, residues &amp;lt;scene name=&#039;68/683383/Bombykol_ligand_in_2p71/2&#039;&amp;gt;Asp-132&amp;lt;/scene&amp;gt; (and Glu-141, if present) triggers the formation of the alpha-helix upon protonation at low pH. This causes the &amp;lt;scene name=&#039;68/683383/1dqe_2fjy-bom/1&#039;&amp;gt;ejaculation of the ligand from the binding pocket&amp;lt;/scene&amp;gt;, which is replaced by the formatted alpha helix&amp;lt;ref&amp;gt;doi: 10.1016/j.bbrc&amp;lt;/ref&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
{{Button Toggle AnimationOnPause}}&lt;br /&gt;
&lt;br /&gt;
Studies on other Lepidopterans that show a similar pH dependent conformation suggests that this model is a general model moth PBP&amp;lt;ref name=&amp;quot;Leal&amp;quot; /&amp;gt;. &lt;br /&gt;
Nonetheless, the enormous diversity among insects is not allowing us to assume this model is true for all insects&#039; OBPs.&lt;br /&gt;
[[Image:N model extended.png|thumb|upright=2.5|Figure 1. The events prior the neuron excitation, following the &amp;quot;N model&amp;quot; suggested by Kaissling (2009)&amp;lt;ref name=&amp;quot;Kaissling 2009&amp;quot; /&amp;gt;: The pheromone enters the sensillar lymph through a pore in cuticle. The pheromone can then be degraded by the ODE (1) -or- bind to the A and B protein forms (2a and 2b, respectively).  When the complex arrives at the low pH near the membrane, the transition is in favor of the A-form, (3) in which the -c-terminus is forming an alpha helix inside the binding cavity, pushing out the pheromone. The activation of the complex of odorant receptor and coreceptor (OR:OR-CO), is induced by ether the complex of pheromone-PBP, or by the pheromone alone (5, two options). The B-form can also act as a scavenger, as it mediates the deactivation of the pheromone (6) and releases it to the ODE (6)]] &lt;br /&gt;
====Receptor activation====&lt;br /&gt;
Two theories have been proposed for the activation of the odorant receptors located on the dendrtirte membrane. One theory suggests that the pheromone-PBP complex is needed for the receptor activation, while the second theory argue that the pheromone itself is sufficient for the activation of the receptor.   &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;Activation by the pheromone alone&#039;&#039;&#039; &lt;br /&gt;
This model is supported by the pH dependent conformation transition, that is described above. The bulk of the sensillar lymph is in neutral pH (6.5-7), while environment near the dendrite membrane bears a low pH (4.5), due to the negative charges on the surface of the membrane &amp;lt;ref&amp;gt;DOI: 10.1016/0040-8166(84)90004-1&amp;lt;/ref&amp;gt;, which cause the accumulation of positively charged kations near the membrane surface (20-50 nm)&amp;lt;ref name=&amp;quot;Kaissling 2009&amp;quot; /&amp;gt;. According to this model (illustrated in [[figure 1]]), the pheromone is entering the sensillar lymph through a pore in the cuticle, then it can be either degraded by odorant degrading enzymes (ODE) or bind to a PBP (of both forms). Once the complex is arriving to the low pH environment near the dendrite membrane the PBP will shift to the A-form, thereby ejaculating the ligand from the binding pocket, allowing it to activate the OR:CO-OR complex and the cellular signal transduction begins.      &lt;br /&gt;
 &lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;Activation by the complex pheromone-PBP&#039;&#039;&#039;&lt;br /&gt;
An alternative mode of action was proposed for the receptor activation in Drosophila, where it was found that the complex of pheromone-PBP is required for the activity of pheromone-sensitive neurons &amp;lt;ref&amp;gt;DOI: 10.1016/j.neuron.2004.12.031&amp;lt;ref/&amp;gt;&amp;lt;ref&amp;gt;doi: 10.1016/j.cell.2008.04.046&amp;lt;ref/&amp;gt; &lt;br /&gt;
&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== See also == &lt;br /&gt;
*[[Odorant_binding_protein_3D_structures]]&lt;br /&gt;
*[[Chemical communication in arthropods]]&lt;br /&gt;
*[[Pheromone binding protein]]&lt;br /&gt;
== References ==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Nurit Eliash</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Chemical_communication_in_arthropods&amp;diff=2368480</id>
		<title>Chemical communication in arthropods</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Chemical_communication_in_arthropods&amp;diff=2368480"/>
		<updated>2015-01-28T10:59:26Z</updated>

		<summary type="html">&lt;p&gt;Nurit Eliash: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;[[Image:Sensilla.png|thumb|upright=1.5|Figure 1: Vertebrate (a), and insect (b) sensilla. Figure 1 from Kaupp (2010), used with permission of Prof. U. Benjamin Kaupp.]] &lt;br /&gt;
[[Image:Signal trunsdution - Sanchez 2009.jpg|thumb|right|upright=2|Figure 2.(a) Schematic representation of the general structure of an insect olfactory hair; (b) The first molecular steps of the insect chemosensory signaling transduction pathway. Figure 1 from Sánchez-Gracia et al.(2009)&amp;lt;ref&amp;gt;doi: 10.1038/hdy.2009.55&amp;lt;/ref&amp;gt;, used with permission of Prof. Sa´nchez-Gracia.]]&lt;br /&gt;
 [[Image:Vieira and Rozas 2011 fig7.JPG|thumb|upright=1.5|Figure 3. The evolution of the Chemosensory System. Blue boxes represent the aquatic lifestyle. Right: Presence or absence of the chemosensory gene families in extant species. Branch lengths are not to scale. Figure 7 from Vieira and Rozas (2011), used with permission of Prof Julio Rozas &amp;lt;ref name=&amp;quot;Vieira and Rozas&amp;quot;&amp;gt;DOI: 10.1093/gbe/evr033&amp;lt;/ref&amp;gt;]] &lt;br /&gt;
&lt;br /&gt;
==The molecular basis of chemical communication==&lt;br /&gt;
The sense of smell, [http://en.wikipedia.org/wiki/Olfaction Olfaction] is a primary sense in nature. It plays a significant role in behaviors which are crucial for the organism survival: food searching, host and mating selection, and avoiding predators and pathogens &amp;lt;ref name=&amp;quot;kaupp&amp;quot;&amp;gt;DOI: 10.1038/nrn2789&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
In both [http://en.wikipedia.org/wiki/Arthropod arthropods] and [http://en.wikipedia.org/wiki/Vertebrate vertebrates] the detection of volatiles is completed by a complicated process which is mediated by soluble as well as transmembrane proteins &amp;lt;ref name=&amp;quot;pelosi&amp;quot;&amp;gt;DOI: 10.3389/fphys.2014.00320&amp;lt;/ref&amp;gt;.&lt;br /&gt;
It should be mentioned that the detection of [http://en.wikipedia.org/wiki/Pheromone pheromones] is also vital to microorganisms, as it regulates gene expression in what is termed [http://en.wikipedia.org/wiki/Quorum_sensing “quorum sensing”].  &lt;br /&gt;
In arthropods, most of what is known on chemosensory communication is based on insects&#039; research. The process begins when a volatile (mostly a small [http://en.wikipedia.org/wiki/Hydrophobe hydrophobic] molecule) enters the chemosensilla lymph of an insect, or the mucus of a vertebrate in the nasal cavity ([[fig 1]]). Both mediums are abundant in soluble proteins which binds to the hydrophobic molecules, solubilizes and carries it to the [http://en.wikipedia.org/wiki/Chemoreceptor chemoreceptors] on the dendritic membrane of the olfactory receptor neuron &amp;lt;ref name=&amp;quot;kaupp&amp;quot; /&amp;gt;&amp;lt;ref&amp;gt;Vogt RG (2005) Molecular basis of pheromone detection in insects. Comprehensive Insect Physiology, Biochemistry, Pharmacology and Molecular Biology, eds Gilbert LI, Iatro K, Gills S (Elsevier, London), Vol 3, pp 753–804.&amp;lt;/ref&amp;gt;.The chemical signal is there by translated into an electrical signal which can cause an immediate response, or further elaborate with other signals in the insect&#039;s mushroom bodies or vertebrate&#039;s brain ([[fig 2]])&amp;lt;ref&amp;gt;doi: 10.3389/fncel.2012.00048&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;doi: 10.1146/annurev-ento-120811-153635&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== What is the differences and similarities between Arthropods and Vertebrates? ==&lt;br /&gt;
 &lt;br /&gt;
Though functionally similar, receptors as well as soluble proteins are structurally and genetically unrelated in insects and vertebrates (see [[fig 3]] for the putative evolution of proteins involved in chemosensory system).   &lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;Receptors&#039;&#039;&#039; &lt;br /&gt;
Most of the vertebrates&#039; chemosensory receptors are metabotropic and belong to the [[G protein-coupled receptors]]. Once the volatile binds to the receptor it initiates intracellular signal transduction &amp;lt;ref&amp;gt;doi: 10.1016/S0167-4838(00)00167-9&amp;lt;/ref&amp;gt;. On the other hand, arthropods&#039; and insects&#039; chemoreceptors are composed of two subunits: [http://en.wikipedia.org/wiki/Olfactory_receptor Receptor] and [http://en.wikipedia.org/wiki/Co-receptor Co-receptor] that upon interaction with the volatile or the complex of volatile-soluble protein, are activated and serve as an [http://en.wikipedia.org/wiki/Ion_channel ion channel]. The opening of the ion channel changes the [http://en.wikipedia.org/wiki/Membrane_potential membrane potential], and starts the inter-cellular signal transduction&amp;lt;ref&amp;gt;Vogt RG (2005) Molecular basis of pheromone detection in insects. Comprehensive Insect Physiology, Biochemistry, Pharmacology and Molecular Biology, eds Gilbert LI, Iatro K, Gills S (Elsevier, London), Vol 3, pp 753–804.&amp;lt;/ref&amp;gt;.[[Image:Chemoreceptors-insects.jpg|thumb|center|upright=2.5|Figure 4: Types of insect receptors. Figure 1 from Kaupp (2010), used with permission of Prof. U. Benjamin Kaupp.]]    &lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;Soluble proteins&#039;&#039;&#039;&lt;br /&gt;
These proteins which are concentrated in the sensillar lymph, solubilize and carry the volatile molecules to the receptor. &lt;br /&gt;
There are two main known types of soluble proteins that are involved in arthropods&#039; chemical communication: &#039;&#039;&#039;[http://proteopedia.org/w/Odorant_binding_protein Odorant binding proteins –OBPs]&#039;&#039;&#039;,&#039;&#039;&#039;[http://proteopedia.org/wiki/index.php/Chemosensory_protein Chemosensory protein-CSP]&#039;&#039;&#039; ([[fig 5]]). Though bearing the same name and participating in the same function, OBP of vertebrates and arthropods are two distinct families with completely different structure and origin&amp;lt;ref name=&amp;quot;pelosi&amp;quot; /&amp;gt;. Arthropods&#039; OBP are composed of alpha helices, while vertebrates&#039; OBP belong to the [http://en.wikipedia.org/wiki/Lipocalin Lipocalins] super family and have a beta-barrel structure (for structure comparison, see [[table 1]] and [[fig 5]]). Recently, another family of protein has been suggested to play a role in ant chemical communication, &#039;&#039;&#039;[https://www.wikigenes.org/e/gene/e/10577.html Niemann-Pick type C2 protein-NPC2]&#039;&#039;&#039; &amp;lt;ref name=&amp;quot;ishida&amp;quot;&amp;gt;DOI: 10.1073/pnas.1323928111&amp;lt;/ref&amp;gt;. &lt;br /&gt;
[[Image:Fig 3 soluble proteins.png|thumb|center|upright=3|Figure 5. (a) An example for vertebrate&#039;s OBP-a pig OBP, PDB:[[1e06]]; (b) An example for insect&#039;s OBP- &#039;&#039;Bombyx mori&#039;&#039; PBP, PDB:[[1dqe]]; (c) An example for insect&#039;s CSP-&#039;&#039;Mamestra brassicae&#039;&#039; CSP2 PDB:[[1n8u]]]]&lt;br /&gt;
[[Image:Soluble proteins table.png|thumb|center|upright=2|Table 1. Summation of the main structure properties of soluble proteins types]]&lt;br /&gt;
&lt;br /&gt;
==Types of Soluble proteins in arthropods== &lt;br /&gt;
&amp;lt;StructureSection load=&#039;1OOH&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;&#039;&#039;Mamestra brassicae&#039;&#039; CSP2 PDB:[[1n8u]]&#039; scene=&#039;&#039;&amp;gt;&lt;br /&gt;
In each protein the consereved &amp;lt;font color=#FF7E00&amp;gt;&amp;lt;b&amp;gt;&#039;&#039;&#039;cysteins&#039;&#039;&#039;&amp;lt;/b&amp;gt;&amp;lt;/font&amp;gt;and the &amp;lt;font color=#FDEE00&amp;gt;&amp;lt;b&amp;gt;&#039;&#039;&#039;disulfide bonds&#039;&#039;&#039;&amp;lt;/b&amp;gt;&amp;lt;/font&amp;gt; are color marked.&lt;br /&gt;
*&#039;&#039;&#039;OBP&#039;&#039;&#039;&lt;br /&gt;
This family was the first soluble protein discovered in the chemosensory system of arthropods. Its general strcuture is of alpha helices that are compactly tied by 3 disulfid bridges formed by 6 consereved cystein residues. &lt;br /&gt;
The male fly of &#039;&#039;Drosophila melanogaster&#039;&#039; produce the pheromone 11-cis vaccenyl acetate which mediates aggregation behavior of other flys of the same species&amp;lt;ref&amp;gt;doi:10.1523/JNEUROSCI.0876-06.2006&amp;lt;/ref&amp;gt;. The detection of the pheromone, was shown to be mediated by pheromone-induced conformational shifts in the PBP, &amp;lt;scene name=&#039;61/614066/Lush/1&#039;&amp;gt;LUSH&amp;lt;/scene&amp;gt;. In fact, the trigering of the neuron was possible in the absence of the pheromone itself&amp;lt;ref&amp;gt;doi: m10.1016/j.cell.2008.04.046&amp;lt;/ref&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;CSP&#039;&#039;&#039;&lt;br /&gt;
This protein family which was discovered after the OBP family, though having a similar alpha helice structure, is shorter and bear only 4 conserved cysteins that forms 2 disulfide bridges. &lt;br /&gt;
In the moth &#039;&#039;Mamestra brassicae&#039;&#039; a member of the CSP family, CSPMbraA6, was isolated from the moth antennae. It was shown that the protein can bind &amp;lt;scene name=&#039;61/614066/Mamestra_brassicae_csp/1&#039;&amp;gt;three molecules of its ligand, 12-bromo-dodecanol&amp;lt;/scene&amp;gt; at the same time&amp;lt;ref&amp;gt;doi: 10.1073/pnas.0836654100&amp;lt;/ref&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;NPC2&#039;&#039;&#039;&lt;br /&gt;
Recently, a new family of proteins have been suggested to play a role as a soluble protein. Until now NPC2 proteins were known to carry lipids and cholesterol molecules in the cells&amp;lt;ref&amp;gt;doi: 10.1016/j.bbalip.2004.08.007&amp;lt;/ref&amp;gt;, yet a member of this family was isolated from the antennae of the ant &#039;&#039;Camponatus japonicus&#039;&#039;&amp;lt;ref name=&amp;quot;ishida&amp;quot; /&amp;gt;&amp;lt;ref&amp;gt;. This protein have a beta- barrel shape and &amp;lt;scene name=&#039;61/614066/Npc2_cysteins/2&#039;&amp;gt;6 cysteins forming 3 disulfide bonds&amp;lt;/scene&amp;gt; (similar to classical vertebrates OBP). Another conserved feature is the , supposedly attracting the hydrophobic ligand to the cavity&amp;lt;ref&amp;gt;doi: 10.1074/jbc.M703848200.STRUCTURAL&amp;lt;/ref&amp;gt;. &lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== See also == &lt;br /&gt;
*[[Odorant_binding_protein_3D_structures]]&lt;br /&gt;
*For comprehensive explanation about quorum sensing please turn to Fuqua et al. (2001) &amp;lt;ref&amp;gt;DOI: 10.1146/annurev.genet.35.102401.090913 &amp;lt;/ref&amp;gt;.&lt;br /&gt;
*for more information about the protein-ligand interaction, you may go to [[Odorant binding protein]].&lt;br /&gt;
== References ==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Nurit Eliash</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Chemical_communication_in_arthropods&amp;diff=2368468</id>
		<title>Chemical communication in arthropods</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Chemical_communication_in_arthropods&amp;diff=2368468"/>
		<updated>2015-01-28T10:55:42Z</updated>

		<summary type="html">&lt;p&gt;Nurit Eliash: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;[[Image:Sensilla.png|thumb|upright=1.5|Figure 1: Vertebrate (a), and insect (b) sensilla. Figure 1 from Kaupp (2010), used with permission of Prof. U. Benjamin Kaupp.]] &lt;br /&gt;
[[Image:Signal trunsdution - Sanchez 2009.jpg|thumb|right|upright=2|Figure 2.(a) Schematic representation of the general structure of an insect olfactory hair; (b) The first molecular steps of the insect chemosensory signaling transduction pathway. Figure 1 from Sánchez-Gracia et al.(2009)&amp;lt;ref&amp;gt;doi: 10.1038/hdy.2009.55&amp;lt;/ref&amp;gt;, used with permission of Prof. Sa´nchez-Gracia.]]&lt;br /&gt;
 [[Image:Vieira and Rozas 2011 fig7.JPG|thumb|upright=1.5|Figure 3. The evolution of the Chemosensory System. Blue boxes represent the aquatic lifestyle. Right: Presence or absence of the chemosensory gene families in extant species. Branch lengths are not to scale. Figure 7 from Vieira and Rozas (2011), used with permission of Prof Julio Rozas &amp;lt;ref name=&amp;quot;Vieira and Rozas&amp;quot;&amp;gt;DOI: 10.1093/gbe/evr033&amp;lt;/ref&amp;gt;]] &lt;br /&gt;
&lt;br /&gt;
==The molecular basis of chemical communication==&lt;br /&gt;
The sense of smell, [http://en.wikipedia.org/wiki/Olfaction Olfaction] is a primary sense in nature. It plays a significant role in behaviors which are crucial for the organism survival: food searching, host and mating selection, and avoiding predators and pathogens &amp;lt;ref name=&amp;quot;kaupp&amp;quot;&amp;gt;DOI: 10.1038/nrn2789&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
In both [http://en.wikipedia.org/wiki/Arthropod arthropods] and [http://en.wikipedia.org/wiki/Vertebrate vertebrates] the detection of volatiles is completed by a complicated process which is mediated by soluble as well as transmembrane proteins &amp;lt;ref name=&amp;quot;pelosi&amp;quot;&amp;gt;DOI: 10.3389/fphys.2014.00320&amp;lt;/ref&amp;gt;.&lt;br /&gt;
It should be mentioned that the detection of [http://en.wikipedia.org/wiki/Pheromone pheromones] is also vital to microorganisms, as it regulates gene expression in what is termed [http://en.wikipedia.org/wiki/Quorum_sensing “quorum sensing”].  &lt;br /&gt;
In arthropods, most of what is known on chemosensory communication is based on insects&#039; research. The process begins when a volatile (mostly a small [http://en.wikipedia.org/wiki/Hydrophobe hydrophobic] molecule) enters the chemosensilla lymph of an insect, or the mucus of a vertebrate in the nasal cavity ([[fig 1]]). Both mediums are abundant in soluble proteins which binds to the hydrophobic molecules, solubilizes and carries it to the [http://en.wikipedia.org/wiki/Chemoreceptor chemoreceptors] on the dendritic membrane of the olfactory receptor neuron &amp;lt;ref name=&amp;quot;kaupp&amp;quot; /&amp;gt;&amp;lt;ref&amp;gt;Vogt RG (2005) Molecular basis of pheromone detection in insects. Comprehensive Insect Physiology, Biochemistry, Pharmacology and Molecular Biology, eds Gilbert LI, Iatro K, Gills S (Elsevier, London), Vol 3, pp 753–804.&amp;lt;/ref&amp;gt;.The chemical signal is there by translated into an electrical signal which can cause an immediate response, or further elaborate with other signals in the insect&#039;s mushroom bodies or vertebrate&#039;s brain ([[fig 2]])&amp;lt;ref&amp;gt;doi: 10.3389/fncel.2012.00048&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;doi: 10.1146/annurev-ento-120811-153635&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== What is the differences and similarities between Arthropods and Vertebrates? ==&lt;br /&gt;
 &lt;br /&gt;
Though functionally similar, receptors as well as soluble proteins are structurally and genetically unrelated in insects and vertebrates (see [[fig 3]] for the putative evolution of proteins involved in chemosensory system).   &lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;Receptors&#039;&#039;&#039; &lt;br /&gt;
Most of the vertebrates&#039; chemosensory receptors are metabotropic and belong to the [[G protein-coupled receptors]]. Once the volatile binds to the receptor it initiates intracellular signal transduction &amp;lt;ref&amp;gt;doi: 10.1016/S0167-4838(00)00167-9&amp;lt;/ref&amp;gt;. On the other hand, arthropods&#039; and insects&#039; chemoreceptors are composed of two subunits: [http://en.wikipedia.org/wiki/Olfactory_receptor Receptor] and [http://en.wikipedia.org/wiki/Co-receptor Co-receptor] that upon interaction with the volatile or the complex of volatile-soluble protein, are activated and serve as an [http://en.wikipedia.org/wiki/Ion_channel ion channel]. The opening of the ion channel changes the [http://en.wikipedia.org/wiki/Membrane_potential membrane potential], and starts the inter-cellular signal transduction&amp;lt;ref&amp;gt;Vogt RG (2005) Molecular basis of pheromone detection in insects. Comprehensive Insect Physiology, Biochemistry, Pharmacology and Molecular Biology, eds Gilbert LI, Iatro K, Gills S (Elsevier, London), Vol 3, pp 753–804.&amp;lt;/ref&amp;gt;.[[Image:Chemoreceptors-insects.jpg|thumb|center|upright=2.5|Figure 4: Types of insect receptors. Figure 1 from Kaupp (2010), used with permission of Prof. U. Benjamin Kaupp.]]    &lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;Soluble proteins&#039;&#039;&#039;&lt;br /&gt;
These proteins which are concentrated in the sensillar lymph, solubilize and carry the volatile molecules to the receptor. &lt;br /&gt;
There are two main known types of soluble proteins that are involved in arthropods&#039; chemical communication: &#039;&#039;&#039;[http://proteopedia.org/w/Odorant_binding_protein Odorant binding proteins –OBPs]&#039;&#039;&#039;,&#039;&#039;&#039;[http://proteopedia.org/wiki/index.php/Chemosensory_protein Chemosensory protein-CSP]&#039;&#039;&#039; ([[fig 5]]). Though bearing the same name and participating in the same function, OBP of vertebrates and arthropods are two distinct families with completely different structure and origin&amp;lt;ref name=&amp;quot;pelosi&amp;quot; /&amp;gt;. Arthropods&#039; OBP are composed of alpha helices, while vertebrates&#039; OBP belong to the [http://en.wikipedia.org/wiki/Lipocalin Lipocalins] super family and have a beta-barrel structure (for structure comparison, see [[table 1]] and [[fig 5]]). Recently, another family of protein has been suggested to play a role in ant chemical communication, &#039;&#039;&#039;[https://www.wikigenes.org/e/gene/e/10577.html Niemann-Pick type C2 protein-NPC2]&#039;&#039;&#039; &amp;lt;ref name=&amp;quot;ishida&amp;quot;&amp;gt;DOI: 10.1073/pnas.1323928111&amp;lt;/ref&amp;gt;. &lt;br /&gt;
[[Image:Fig 3 soluble proteins.png|thumb|center|upright=3|Figure 5. (a) An example for vertebrate&#039;s OBP-a pig OBP, PDB:[[1e06]]; (b) An example for insect&#039;s OBP- &#039;&#039;Bombyx mori&#039;&#039; PBP, PDB:[[1dqe]]; (c) An example for insect&#039;s CSP-&#039;&#039;Mamestra brassicae&#039;&#039; CSP2 PDB:[[1n8u]]]]&lt;br /&gt;
[[Image:Soluble proteins table.png|thumb|center|upright=2|Table 1. Summation of the main structure properties of soluble proteins types]]&lt;br /&gt;
&lt;br /&gt;
==Types of Soluble proteins in arthropods== &lt;br /&gt;
&amp;lt;StructureSection load=&#039;1OOH&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;&#039;&#039;Mamestra brassicae&#039;&#039; CSP2 PDB:[[1n8u]]&#039; scene=&#039;&#039;&amp;gt;&lt;br /&gt;
In each protein the consereved &amp;lt;font color=#FF7E00&amp;gt;&amp;lt;b&amp;gt;&#039;&#039;&#039;cysteins&#039;&#039;&#039;&amp;lt;/b&amp;gt;&amp;lt;/font&amp;gt;and the &amp;lt;font color=#FDEE00&amp;gt;&amp;lt;b&amp;gt;&#039;&#039;&#039;disulfide bonds&#039;&#039;&#039;&amp;lt;/b&amp;gt;&amp;lt;/font&amp;gt; are color marked.&lt;br /&gt;
*&#039;&#039;&#039;OBP&#039;&#039;&#039;&lt;br /&gt;
This family was the first soluble protein discovered in the chemosensory system of arthropods. Its general strcuture is of alpha helices that are compactly tied by 3 disulfid bridges formed by 6 consereved cystein residues. &lt;br /&gt;
The male fly of &#039;&#039;Drosophila melanogaster&#039;&#039; produce the pheromone 11-cis vaccenyl acetate which mediates aggregation behavior of other flys of the same species&amp;lt;ref&amp;gt;doi:10.1523/JNEUROSCI.0876-06.2006&amp;lt;/ref&amp;gt;. The detection of the pheromone, was shown to be mediated by pheromone-induced conformational shifts in the PBP, &amp;lt;scene name=&#039;61/614066/Lush/1&#039;&amp;gt;LUSH&amp;lt;/scene&amp;gt;. In fact, the trigering of the neuron was possible in the absence of the pheromone itself&amp;lt;ref&amp;gt;doi: m10.1016/j.cell.2008.04.046&amp;lt;/ref&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;CSP&#039;&#039;&#039;&lt;br /&gt;
This protein family which was discovered after the OBP family, though having a similar alpha helice structure, is shorter and bear only 4 conserved cysteins that forms 2 disulfide bridges. &lt;br /&gt;
In the moth &#039;&#039;Mamestra brassicae&#039;&#039; a member of the CSP family, CSPMbraA6, was isolated from the moth antennae. It was shown that the protein can bind &amp;lt;scene name=&#039;61/614066/Mamestra_brassicae_csp/1&#039;&amp;gt;three molecules of its ligand, 12-bromo-dodecanol&amp;lt;/scene&amp;gt; at the same time&amp;lt;ref&amp;gt;doi: 10.1073/pnas.0836654100&amp;lt;/ref&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;NPC2&#039;&#039;&#039;&lt;br /&gt;
Recently, a new family of proteins have been suggested to play a role as a soluble protein. Until now NPC2 proteins were known to carry lipids and cholesterol molecules in the cells&amp;lt;ref&amp;gt;doi: 10.1016/j.bbalip.2004.08.007&amp;lt;/ref&amp;gt;, yet a member of this family was isolated from the antennae of the ant&#039;&#039;Camponatus japonicus&#039;&#039;&amp;lt;ref name=&amp;quot;ishida&amp;quot; /&amp;gt;&amp;lt;ref&amp;gt;. This protein have a (similar to vertebrates OBP). Another conserved feature is the &amp;lt;, supposedly attracting the hydrophobic ligand to the cavity&amp;lt;ref&amp;gt;doi: 10.1074/jbc.M703848200.STRUCTURAL&amp;lt;/ref&amp;gt;. &lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== See also == &lt;br /&gt;
*[[Odorant_binding_protein_3D_structures]]&lt;br /&gt;
*For comprehensive explanation about quorum sensing please turn to Fuqua et al. (2001) &amp;lt;ref&amp;gt;DOI: 10.1146/annurev.genet.35.102401.090913 &amp;lt;/ref&amp;gt;.&lt;br /&gt;
*for more information about the protein-ligand interaction, you may go to [[Odorant binding protein]].&lt;br /&gt;
== References ==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Nurit Eliash</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Chemical_communication_in_arthropods&amp;diff=2368447</id>
		<title>Chemical communication in arthropods</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Chemical_communication_in_arthropods&amp;diff=2368447"/>
		<updated>2015-01-28T10:51:34Z</updated>

		<summary type="html">&lt;p&gt;Nurit Eliash: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;[[Image:Sensilla.png|thumb|upright=1.5|Figure 1: Vertebrate (a), and insect (b) sensilla. Figure 1 from Kaupp (2010), used with permission of Prof. U. Benjamin Kaupp.]] &lt;br /&gt;
[[Image:Signal trunsdution - Sanchez 2009.jpg|thumb|right|upright=2|Figure 2.(a) Schematic representation of the general structure of an insect olfactory hair; (b) The first molecular steps of the insect chemosensory signaling transduction pathway. Figure 1 from Sánchez-Gracia et al.(2009)&amp;lt;ref&amp;gt;doi: 10.1038/hdy.2009.55&amp;lt;/ref&amp;gt;, used with permission of Prof. Sa´nchez-Gracia.]]&lt;br /&gt;
 [[Image:Vieira and Rozas 2011 fig7.JPG|thumb|upright=1.5|Figure 3. The evolution of the Chemosensory System. Blue boxes represent the aquatic lifestyle. Right: Presence or absence of the chemosensory gene families in extant species. Branch lengths are not to scale. Figure 7 from Vieira and Rozas (2011), used with permission of Prof Julio Rozas &amp;lt;ref name=&amp;quot;Vieira and Rozas&amp;quot;&amp;gt;DOI: 10.1093/gbe/evr033&amp;lt;/ref&amp;gt;]] &lt;br /&gt;
&lt;br /&gt;
==The molecular basis of chemical communication==&lt;br /&gt;
The sense of smell, [http://en.wikipedia.org/wiki/Olfaction Olfaction] is a primary sense in nature. It plays a significant role in behaviors which are crucial for the organism survival: food searching, host and mating selection, and avoiding predators and pathogens &amp;lt;ref name=&amp;quot;kaupp&amp;quot;&amp;gt;DOI: 10.1038/nrn2789&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
In both [http://en.wikipedia.org/wiki/Arthropod arthropods] and [http://en.wikipedia.org/wiki/Vertebrate vertebrates] the detection of volatiles is completed by a complicated process which is mediated by soluble as well as transmembrane proteins &amp;lt;ref name=&amp;quot;pelosi&amp;quot;&amp;gt;DOI: 10.3389/fphys.2014.00320&amp;lt;/ref&amp;gt;.&lt;br /&gt;
It should be mentioned that the detection of [http://en.wikipedia.org/wiki/Pheromone pheromones] is also vital to microorganisms, as it regulates gene expression in what is termed [http://en.wikipedia.org/wiki/Quorum_sensing “quorum sensing”].  &lt;br /&gt;
In arthropods, most of what is known on chemosensory communication is based on insects&#039; research. The process begins when a volatile (mostly a small [http://en.wikipedia.org/wiki/Hydrophobe hydrophobic] molecule) enters the chemosensilla lymph of an insect, or the mucus of a vertebrate in the nasal cavity ([[fig 1]]). Both mediums are abundant in soluble proteins which binds to the hydrophobic molecules, solubilizes and carries it to the [http://en.wikipedia.org/wiki/Chemoreceptor chemoreceptors] on the dendritic membrane of the olfactory receptor neuron &amp;lt;ref name=&amp;quot;kaupp&amp;quot; /&amp;gt;&amp;lt;ref&amp;gt;Vogt RG (2005) Molecular basis of pheromone detection in insects. Comprehensive Insect Physiology, Biochemistry, Pharmacology and Molecular Biology, eds Gilbert LI, Iatro K, Gills S (Elsevier, London), Vol 3, pp 753–804.&amp;lt;/ref&amp;gt;.The chemical signal is there by translated into an electrical signal which can cause an immediate response, or further elaborate with other signals in the insect&#039;s mushroom bodies or vertebrate&#039;s brain ([[fig 2]])&amp;lt;ref&amp;gt;doi: 10.3389/fncel.2012.00048&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;doi: 10.1146/annurev-ento-120811-153635&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== What is the differences and similarities between Arthropods and Vertebrates? ==&lt;br /&gt;
 &lt;br /&gt;
Though functionally similar, receptors as well as soluble proteins are structurally and genetically unrelated in insects and vertebrates (see [[fig 3]] for the putative evolution of proteins involved in chemosensory system).   &lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;Receptors&#039;&#039;&#039; &lt;br /&gt;
Most of the vertebrates&#039; chemosensory receptors are metabotropic and belong to the [[G protein-coupled receptors]]. Once the volatile binds to the receptor it initiates intracellular signal transduction &amp;lt;ref&amp;gt;doi: 10.1016/S0167-4838(00)00167-9&amp;lt;/ref&amp;gt;. On the other hand, arthropods&#039; and insects&#039; chemoreceptors are composed of two subunits: [http://en.wikipedia.org/wiki/Olfactory_receptor Receptor] and [http://en.wikipedia.org/wiki/Co-receptor Co-receptor] that upon interaction with the volatile or the complex of volatile-soluble protein, are activated and serve as an [http://en.wikipedia.org/wiki/Ion_channel ion channel]. The opening of the ion channel changes the [http://en.wikipedia.org/wiki/Membrane_potential membrane potential], and starts the inter-cellular signal transduction&amp;lt;ref&amp;gt;Vogt RG (2005) Molecular basis of pheromone detection in insects. Comprehensive Insect Physiology, Biochemistry, Pharmacology and Molecular Biology, eds Gilbert LI, Iatro K, Gills S (Elsevier, London), Vol 3, pp 753–804.&amp;lt;/ref&amp;gt;.[[Image:Chemoreceptors-insects.jpg|thumb|center|upright=2.5|Figure 4: Types of insect receptors. Figure 1 from Kaupp (2010), used with permission of Prof. U. Benjamin Kaupp.]]    &lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;Soluble proteins&#039;&#039;&#039;&lt;br /&gt;
These proteins which are concentrated in the sensillar lymph, solubilize and carry the volatile molecules to the receptor. &lt;br /&gt;
There are two main known types of soluble proteins that are involved in arthropods&#039; chemical communication: &#039;&#039;&#039;[http://proteopedia.org/w/Odorant_binding_protein Odorant binding proteins –OBPs]&#039;&#039;&#039;,&#039;&#039;&#039;[http://proteopedia.org/wiki/index.php/Chemosensory_protein Chemosensory protein-CSP]&#039;&#039;&#039; ([[fig 5]]). Though bearing the same name and participating in the same function, OBP of vertebrates and arthropods are two distinct families with completely different structure and origin&amp;lt;ref name=&amp;quot;pelosi&amp;quot; /&amp;gt;. Arthropods&#039; OBP are composed of alpha helices, while vertebrates&#039; OBP belong to the [http://en.wikipedia.org/wiki/Lipocalin Lipocalins] super family and have a beta-barrel structure (for structure comparison, see [[table 1]] and [[fig 5]]). Recently, another family of protein has been suggested to play a role in ant chemical communication, &#039;&#039;&#039;[https://www.wikigenes.org/e/gene/e/10577.html Niemann-Pick type C2 protein-NPC2]&#039;&#039;&#039; &amp;lt;ref name=&amp;quot;ishida&amp;quot;&amp;gt;DOI: 10.1073/pnas.1323928111&amp;lt;/ref&amp;gt;. &lt;br /&gt;
[[Image:Fig 3 soluble proteins.png|thumb|center|upright=3|Figure 5. (a) An example for vertebrate&#039;s OBP-a pig OBP, PDB:[[1e06]]; (b) An example for insect&#039;s OBP- &#039;&#039;Bombyx mori&#039;&#039; PBP, PDB:[[1dqe]]; (c) An example for insect&#039;s CSP-&#039;&#039;Mamestra brassicae&#039;&#039; CSP2 PDB:[[1n8u]]]]&lt;br /&gt;
[[Image:Soluble proteins table.png|thumb|center|upright=2|Table 1. Summation of the main structure properties of soluble proteins types]]&lt;br /&gt;
&lt;br /&gt;
==Types of Soluble proteins in arthropods== &lt;br /&gt;
&amp;lt;StructureSection load=&#039;1OOH&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;&#039;&#039;Mamestra brassicae&#039;&#039; CSP2 PDB:[[1n8u]]&#039; scene=&#039;&#039;&amp;gt;&lt;br /&gt;
In each protein the consereved &amp;lt;font color=#FF7E00&amp;gt;&amp;lt;b&amp;gt;&#039;&#039;&#039;cysteins&#039;&#039;&#039;&amp;lt;/b&amp;gt;&amp;lt;/font&amp;gt;and the &amp;lt;font color=#FDEE00&amp;gt;&amp;lt;b&amp;gt;&#039;&#039;&#039;disulfide bonds&#039;&#039;&#039;&amp;lt;/b&amp;gt;&amp;lt;/font&amp;gt; are color marked.&lt;br /&gt;
*&#039;&#039;&#039;OBP&#039;&#039;&#039;&lt;br /&gt;
This family was the first soluble protein discovered in the chemosensory system of arthropods. Its general strcuture is of alpha helices that are compactly tied by 3 disulfid bridges formed by 6 consereved cystein residues. &lt;br /&gt;
The male fly of &#039;&#039;Drosophila melanogaster&#039;&#039; produce the pheromone 11-cis vaccenyl acetate which mediates aggregation behavior of other flys of the same species&amp;lt;ref&amp;gt;doi:10.1523/JNEUROSCI.0876-06.2006&amp;lt;/ref&amp;gt;. The detection of the pheromone, was shown to be mediated by pheromone-induced conformational shifts in the PBP, &amp;lt;scene name=&#039;61/614066/Lush/1&#039;&amp;gt;LUSH&amp;lt;/scene&amp;gt;. In fact, the trigering of the neuron was possible in the absence of the pheromone itself&amp;lt;ref&amp;gt;doi: m10.1016/j.cell.2008.04.046&amp;lt;/ref&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;CSP&#039;&#039;&#039;&lt;br /&gt;
This protein family which was discovered after the OBP family, though having a similar alpha helice structure, is shorter and bear only 4 conserved cysteins that forms 2 disulfide bridges. &lt;br /&gt;
In the moth &#039;&#039;Mamestra brassicae&#039;&#039; a member of the CSP family, CSPMbraA6, was isolated from the moth antennae. It was shown that the protein can bind &amp;lt;scene name=&#039;61/614066/Mamestra_brassicae_csp/1&#039;&amp;gt;three molecules of its ligand, 12-bromo-dodecanol&amp;lt;/scene&amp;gt; at the same time&amp;lt;ref&amp;gt;doi: 10.1073/pnas.0836654100&amp;lt;/ref&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;NPC2&#039;&#039;&#039;&lt;br /&gt;
Recently, a new family of proteins have been suggested to play a role as a soluble protein. Until now NPC2 proteins were known to carry lipids and cholesterol molecules in the cells&amp;lt;ref&amp;gt;doi: 10.1016/j.bbalip.2004.08.007&amp;lt;/ref&amp;gt;, yet a member of this family was isolated from the antennae of the ant&#039;&#039;Camponatus japonicus&#039;&#039;&amp;lt;ref name=&amp;quot;ishida&amp;quot; /&amp;gt;&amp;lt;ref&amp;gt;. This protein have a &amp;lt;scene name=&#039;61/614066/Npc2_cysteins/1&#039;&amp;gt;beta-barrel shape tied by 3 disulfide bridges formed by 6 conserved cystein residues&amp;lt;/scene&amp;gt; (similar to vertebrates OBP). Another conserved feature is the &amp;lt;scene name=&#039;61/614066/Npc2_cysteins/1&#039;&amp;gt;6 conserved hydrophobic residues at the gate of the cavity&amp;lt;/scene&amp;gt;, supposedly attracting the hydrophobic ligand to the cavity&amp;lt;ref&amp;gt;doi: 10.1074/jbc.M703848200.STRUCTURAL&amp;lt;/ref&amp;gt;. &lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== See also == &lt;br /&gt;
*[[Odorant_binding_protein_3D_structures]]&lt;br /&gt;
*For comprehensive explanation about quorum sensing please turn to Fuqua et al. (2001) &amp;lt;ref&amp;gt;DOI: 10.1146/annurev.genet.35.102401.090913 &amp;lt;/ref&amp;gt;.&lt;br /&gt;
*for more information about the protein-ligand interaction, you may go to [[Odorant binding protein]].&lt;br /&gt;
== References ==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Nurit Eliash</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Chemical_communication_in_arthropods&amp;diff=2368414</id>
		<title>Chemical communication in arthropods</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Chemical_communication_in_arthropods&amp;diff=2368414"/>
		<updated>2015-01-28T10:44:58Z</updated>

		<summary type="html">&lt;p&gt;Nurit Eliash: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;[[Image:Sensilla.png|thumb|upright=1.5|Figure 1: Vertebrate (a), and insect (b) sensilla. Figure 1 from Kaupp (2010), used with permission of Prof. U. Benjamin Kaupp.]] &lt;br /&gt;
[[Image:Signal trunsdution - Sanchez 2009.jpg|thumb|right|upright=2|Figure 2.(a) Schematic representation of the general structure of an insect olfactory hair; (b) The first molecular steps of the insect chemosensory signaling transduction pathway. Figure 1 from Sánchez-Gracia et al.(2009)&amp;lt;ref&amp;gt;doi: 10.1038/hdy.2009.55&amp;lt;/ref&amp;gt;, used with permission of Prof. Sa´nchez-Gracia.]]&lt;br /&gt;
 [[Image:Vieira and Rozas 2011 fig7.JPG|thumb|upright=1.5|Figure 3. The evolution of the Chemosensory System. Blue boxes represent the aquatic lifestyle. Right: Presence or absence of the chemosensory gene families in extant species. Branch lengths are not to scale. Figure 7 from Vieira and Rozas (2011), used with permission of Prof Julio Rozas &amp;lt;ref name=&amp;quot;Vieira and Rozas&amp;quot;&amp;gt;DOI: 10.1093/gbe/evr033&amp;lt;/ref&amp;gt;]] &lt;br /&gt;
&lt;br /&gt;
==The molecular basis of chemical communication==&lt;br /&gt;
The sense of smell, [http://en.wikipedia.org/wiki/Olfaction Olfaction] is a primary sense in nature. It plays a significant role in behaviors which are crucial for the organism survival: food searching, host and mating selection, and avoiding predators and pathogens &amp;lt;ref name=&amp;quot;kaupp&amp;quot;&amp;gt;DOI: 10.1038/nrn2789&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
In both [http://en.wikipedia.org/wiki/Arthropod arthropods] and [http://en.wikipedia.org/wiki/Vertebrate vertebrates] the detection of volatiles is completed by a complicated process which is mediated by soluble as well as transmembrane proteins &amp;lt;ref name=&amp;quot;pelosi&amp;quot;&amp;gt;DOI: 10.3389/fphys.2014.00320&amp;lt;/ref&amp;gt;.&lt;br /&gt;
It should be mentioned that the detection of [http://en.wikipedia.org/wiki/Pheromone pheromones] is also vital to microorganisms, as it regulates gene expression in what is termed [http://en.wikipedia.org/wiki/Quorum_sensing “quorum sensing”].  &lt;br /&gt;
In arthropods, most of what is known on chemosensory communication is based on insects&#039; research. The process begins when a volatile (mostly a small [http://en.wikipedia.org/wiki/Hydrophobe hydrophobic] molecule) enters the chemosensilla lymph of an insect, or the mucus of a vertebrate in the nasal cavity ([[fig 1]]). Both mediums are abundant in soluble proteins which binds to the hydrophobic molecules, solubilizes and carries it to the [http://en.wikipedia.org/wiki/Chemoreceptor chemoreceptors] on the dendritic membrane of the olfactory receptor neuron &amp;lt;ref name=&amp;quot;kaupp&amp;quot; /&amp;gt;&amp;lt;ref&amp;gt;Vogt RG (2005) Molecular basis of pheromone detection in insects. Comprehensive Insect Physiology, Biochemistry, Pharmacology and Molecular Biology, eds Gilbert LI, Iatro K, Gills S (Elsevier, London), Vol 3, pp 753–804.&amp;lt;/ref&amp;gt;.The chemical signal is there by translated into an electrical signal which can cause an immediate response, or further elaborate with other signals in the insect&#039;s mushroom bodies or vertebrate&#039;s brain ([[fig 2]])&amp;lt;ref&amp;gt;doi: 10.3389/fncel.2012.00048&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;doi: 10.1146/annurev-ento-120811-153635&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== What is the differences and similarities between Arthropods and Vertebrates? ==&lt;br /&gt;
 &lt;br /&gt;
Though functionally similar, receptors as well as soluble proteins are structurally and genetically unrelated in insects and vertebrates (see [[fig 3]] for the putative evolution of proteins involved in chemosensory system).   &lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;Receptors&#039;&#039;&#039; &lt;br /&gt;
Most of the vertebrates&#039; chemosensory receptors are metabotropic and belong to the [[G protein-coupled receptors]]. Once the volatile binds to the receptor it initiates intracellular signal transduction &amp;lt;ref&amp;gt;doi: 10.1016/S0167-4838(00)00167-9&amp;lt;/ref&amp;gt;. On the other hand, arthropods&#039; and insects&#039; chemoreceptors are composed of two subunits: [http://en.wikipedia.org/wiki/Olfactory_receptor Receptor] and [http://en.wikipedia.org/wiki/Co-receptor Co-receptor] that upon interaction with the volatile or the complex of volatile-soluble protein, are activated and serve as an [http://en.wikipedia.org/wiki/Ion_channel ion channel]. The opening of the ion channel changes the [http://en.wikipedia.org/wiki/Membrane_potential membrane potential], and starts the inter-cellular signal transduction&amp;lt;ref&amp;gt;Vogt RG (2005) Molecular basis of pheromone detection in insects. Comprehensive Insect Physiology, Biochemistry, Pharmacology and Molecular Biology, eds Gilbert LI, Iatro K, Gills S (Elsevier, London), Vol 3, pp 753–804.&amp;lt;/ref&amp;gt;.[[Image:Chemoreceptors-insects.jpg|thumb|center|upright=2.5|Figure 4: Types of insect receptors. Figure 1 from Kaupp (2010), used with permission of Prof. U. Benjamin Kaupp.]]    &lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;Soluble proteins&#039;&#039;&#039;&lt;br /&gt;
These proteins which are concentrated in the sensillar lymph, solubilize and carry the volatile molecules to the receptor. &lt;br /&gt;
There are two main known types of soluble proteins that are involved in arthropods&#039; chemical communication: &#039;&#039;&#039;[http://proteopedia.org/w/Odorant_binding_protein Odorant binding proteins –OBPs]&#039;&#039;&#039;,&#039;&#039;&#039;[http://proteopedia.org/wiki/index.php/Chemosensory_protein Chemosensory protein-CSP]&#039;&#039;&#039; ([[fig 5]]). Though bearing the same name and participating in the same function, OBP of vertebrates and arthropods are two distinct families with completely different structure and origin&amp;lt;ref name=&amp;quot;pelosi&amp;quot; /&amp;gt;. Arthropods&#039; OBP are composed of alpha helices, while vertebrates&#039; OBP belong to the [http://en.wikipedia.org/wiki/Lipocalin Lipocalins] super family and have a beta-barrel structure (for structure comparison, see [[table 1]] and [[fig 5]]). Recently, another family of protein has been suggested to play a role in ant chemical communication, &#039;&#039;&#039;[https://www.wikigenes.org/e/gene/e/10577.html Niemann-Pick type C2 protein-NPC2]&#039;&#039;&#039; &amp;lt;ref name=&amp;quot;ishida&amp;quot;&amp;gt;DOI: 10.1073/pnas.1323928111&amp;lt;/ref&amp;gt;. &lt;br /&gt;
[[Image:Fig 3 soluble proteins.png|thumb|center|upright=3|Figure 5. (a) An example for vertebrate&#039;s OBP-a pig OBP, PDB:[[1e06]]; (b) An example for insect&#039;s OBP- &#039;&#039;Bombyx mori&#039;&#039; PBP, PDB:[[1dqe]]; (c) An example for insect&#039;s CSP-&#039;&#039;Mamestra brassicae&#039;&#039; CSP2 PDB:[[1n8u]]]]&lt;br /&gt;
[[Image:Soluble proteins table.png|thumb|center|upright=2|Table 1. Summation of the main structure properties of soluble proteins types]]&lt;br /&gt;
&lt;br /&gt;
==Types of Soluble proteins in arthropods== &lt;br /&gt;
&amp;lt;StructureSection load=&#039;1OOH&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;&#039;&#039;Mamestra brassicae&#039;&#039; CSP2 PDB:[[1n8u]]&#039; scene=&#039;&#039;&amp;gt;&lt;br /&gt;
In each protein the consereved &amp;lt;font color=#FF7E00&amp;gt;&amp;lt;b&amp;gt;&#039;&#039;&#039;cysteins&#039;&#039;&#039;&amp;lt;/b&amp;gt;&amp;lt;/font&amp;gt;and the &amp;lt;font color=#FDEE00&amp;gt;&amp;lt;b&amp;gt;&#039;&#039;&#039;disulfide bonds&#039;&#039;&#039;&amp;lt;/b&amp;gt;&amp;lt;/font&amp;gt; are color marked.&lt;br /&gt;
*&#039;&#039;&#039;OBP&#039;&#039;&#039;&lt;br /&gt;
This family was the first soluble protein discovered in the chemosensory system of arthropods. Its general strcuture is of alpha helices that are compactly tied by 3 disulfid bridges formed by 6 consereved cystein residues. &lt;br /&gt;
The male fly of &#039;&#039;Drosophila melanogaster&#039;&#039; produce the pheromone 11-cis vaccenyl acetate which mediates aggregation behavior of other flys of the same species&amp;lt;ref&amp;gt;doi:10.1523/JNEUROSCI.0876-06.2006&amp;lt;/ref&amp;gt;. The detection of the pheromone, was shown to be mediated by pheromone-induced conformational shifts in the PBP, &amp;lt;scene name=&#039;61/614066/Lush/1&#039;&amp;gt;LUSH&amp;lt;/scene&amp;gt;. In fact, the trigering of the neuron was possible in the absence of the pheromone itself&amp;lt;ref&amp;gt;doi: m10.1016/j.cell.2008.04.046&amp;lt;/ref&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;CSP&#039;&#039;&#039;&lt;br /&gt;
This protein family which was discovered after the OBP family, though having a similar alpha helice structure, is shorter and bear only 4 conserved cysteins that forms 2 disulfide bridges. &lt;br /&gt;
In the moth &#039;&#039;Mamestra brassicae&#039;&#039; a member of the CSP family, CSPMbraA6, was isolated from the moth antennae. It was shown that the protein can bind &amp;lt;scene name=&#039;61/614066/Mamestra_brassicae_csp/1&#039;&amp;gt;three molecules of its ligand, 12-bromo-dodecanol&amp;lt;/scene&amp;gt; at the same time&amp;lt;ref&amp;gt;doi: 10.1073/pnas.0836654100&amp;lt;/ref&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;NPC2&#039;&#039;&#039;&lt;br /&gt;
Recently, a new family of proteins have been suggested to play a role as a soluble protein. Until now NPC2 proteins were known to carry lipids and cholesterol molecules in the cells&amp;lt;ref&amp;gt;doi: 10.1016/j.bbalip.2004.08.007&amp;lt;/ref&amp;gt;, yet a member of this family was isolated from the antennae of the ant&#039;&#039;Camponatus japonicus&#039;&#039;&amp;lt;ref name=&amp;quot;ishida&amp;quot; /&amp;gt;&amp;lt;ref&amp;gt;. This protein have a &amp;lt;scene name=&#039;61/614066/Npc2_cysteins/1&#039;&amp;gt;beta-barrel shape tied by 3 disulfide bridges formed by 6 conserved cystein residues&amp;lt;/scene&amp;gt; (similar to vertebrates OBP). Another conserved feature is the &amp;lt;scene name=&#039;61/614066/Resid_in_the_cavity_gate/1&#039;&amp;gt;6 conserved hydrophobic residues at the gate of the cavity&amp;lt;/scene&amp;gt;, supposedly attracting the hydrophobic ligand to the cavity&amp;lt;ref&amp;gt;doi: 10.1074/jbc.M703848200.STRUCTURAL&amp;lt;/ref&amp;gt;. &lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== See also == &lt;br /&gt;
*[[Odorant_binding_protein_3D_structures]]&lt;br /&gt;
*For comprehensive explanation about quorum sensing please turn to Fuqua et al. (2001) &amp;lt;ref&amp;gt;DOI: 10.1146/annurev.genet.35.102401.090913 &amp;lt;/ref&amp;gt;.&lt;br /&gt;
*for more information about the protein-ligand interaction, you may go to [[Odorant binding protein]].&lt;br /&gt;
== References ==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Nurit Eliash</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Chemical_communication_in_arthropods&amp;diff=2368402</id>
		<title>Chemical communication in arthropods</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Chemical_communication_in_arthropods&amp;diff=2368402"/>
		<updated>2015-01-28T10:38:52Z</updated>

		<summary type="html">&lt;p&gt;Nurit Eliash: &amp;lt;ref name=&amp;quot;kaupp&amp;quot;&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;[[Image:Sensilla.png|thumb|upright=1.5|Figure 1: Vertebrate (a), and insect (b) sensilla. Figure 1 from Kaupp (2010), used with permission of Prof. U. Benjamin Kaupp.]] &lt;br /&gt;
[[Image:Signal trunsdution - Sanchez 2009.jpg|thumb|right|upright=2|Figure 2.(a) Schematic representation of the general structure of an insect olfactory hair; (b) The first molecular steps of the insect chemosensory signaling transduction pathway. Figure 1 from Sánchez-Gracia et al.(2009)&amp;lt;ref&amp;gt;doi: 10.1038/hdy.2009.55&amp;lt;/ref&amp;gt;, used with permission of Prof. Sa´nchez-Gracia.]]&lt;br /&gt;
 [[Image:Vieira and Rozas 2011 fig7.JPG|thumb|upright=1.5|Figure 3. The evolution of the Chemosensory System. Blue boxes represent the aquatic lifestyle. Right: Presence or absence of the chemosensory gene families in extant species. Branch lengths are not to scale. Figure 7 from Vieira and Rozas (2011), used with permission of Prof Julio Rozas &amp;lt;ref name=&amp;quot;Vieira and Rozas&amp;quot;&amp;gt;DOI: 10.1093/gbe/evr033&amp;lt;/ref&amp;gt;]] &lt;br /&gt;
&lt;br /&gt;
==The molecular basis of chemical communication==&lt;br /&gt;
The sense of smell, [http://en.wikipedia.org/wiki/Olfaction Olfaction] is a primary sense in nature. It plays a significant role in behaviors which are crucial for the organism survival: food searching, host and mating selection, and avoiding predators and pathogens &amp;lt;ref name=&amp;quot;kaupp&amp;quot;&amp;gt;DOI: 10.1038/nrn2789&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
In both [http://en.wikipedia.org/wiki/Arthropod arthropods] and [http://en.wikipedia.org/wiki/Vertebrate vertebrates] the detection of volatiles is completed by a complicated process which is mediated by soluble as well as transmembrane proteins &amp;lt;ref name=&amp;quot;pelosi&amp;quot;&amp;gt;DOI: 10.3389/fphys.2014.00320&amp;lt;/ref&amp;gt;.&lt;br /&gt;
It should be mentioned that the detection of [http://en.wikipedia.org/wiki/Pheromone pheromones] is also vital to microorganisms, as it regulates gene expression in what is termed [http://en.wikipedia.org/wiki/Quorum_sensing “quorum sensing”].  &lt;br /&gt;
In arthropods, most of what is known on chemosensory communication is based on insects&#039; research. The process begins when a volatile (mostly a small [http://en.wikipedia.org/wiki/Hydrophobe hydrophobic] molecule) enters the chemosensilla lymph of an insect, or the mucus of a vertebrate in the nasal cavity ([[fig 1]]). Both mediums are abundant in soluble proteins which binds to the hydrophobic molecules, solubilizes and carries it to the [http://en.wikipedia.org/wiki/Chemoreceptor chemoreceptors] on the dendritic membrane of the olfactory receptor neuron &amp;lt;ref name=&amp;quot;kaupp&amp;quot; /&amp;gt;&amp;lt;ref&amp;gt;Vogt RG (2005) Molecular basis of pheromone detection in insects. Comprehensive Insect Physiology, Biochemistry, Pharmacology and Molecular Biology, eds Gilbert LI, Iatro K, Gills S (Elsevier, London), Vol 3, pp 753–804.&amp;lt;/ref&amp;gt;.The chemical signal is there by translated into an electrical signal which can cause an immediate response, or further elaborate with other signals in the insect&#039;s mushroom bodies or vertebrate&#039;s brain ([[fig 2]])&amp;lt;ref&amp;gt;doi: 10.3389/fncel.2012.00048&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;doi: 10.1146/annurev-ento-120811-153635&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== What is the differences and similarities between Arthropods and Vertebrates? ==&lt;br /&gt;
 &lt;br /&gt;
Though functionally similar, receptors as well as soluble proteins are structurally and genetically unrelated in insects and vertebrates (see [[fig 3]] for the putative evolution of proteins involved in chemosensory system).   &lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;Receptors&#039;&#039;&#039; &lt;br /&gt;
Most of the vertebrates&#039; chemosensory receptors are metabotropic and belong to the [[G protein-coupled receptors]]. Once the volatile binds to the receptor it initiates intracellular signal transduction &amp;lt;ref&amp;gt;doi: 10.1016/S0167-4838(00)00167-9&amp;lt;/ref&amp;gt;. On the other hand, arthropods&#039; and insects&#039; chemoreceptors are composed of two subunits: [http://en.wikipedia.org/wiki/Olfactory_receptor Receptor] and [http://en.wikipedia.org/wiki/Co-receptor Co-receptor] that upon interaction with the volatile or the complex of volatile-soluble protein, are activated and serve as an [http://en.wikipedia.org/wiki/Ion_channel ion channel]. The opening of the ion channel changes the [http://en.wikipedia.org/wiki/Membrane_potential membrane potential], and starts the inter-cellular signal transduction&amp;lt;ref&amp;gt;Vogt RG (2005) Molecular basis of pheromone detection in insects. Comprehensive Insect Physiology, Biochemistry, Pharmacology and Molecular Biology, eds Gilbert LI, Iatro K, Gills S (Elsevier, London), Vol 3, pp 753–804.&amp;lt;/ref&amp;gt;.[[Image:Chemoreceptors-insects.jpg|thumb|center|upright=2.5|Figure 4: Types of insect receptors. Figure 1 from Kaupp (2010), used with permission of Prof. U. Benjamin Kaupp.]]    &lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;Soluble proteins&#039;&#039;&#039;&lt;br /&gt;
These proteins which are concentrated in the sensillar lymph, solubilize and carry the volatile molecules to the receptor. &lt;br /&gt;
There are two main known types of soluble proteins that are involved in arthropods&#039; chemical communication: &#039;&#039;&#039;[http://proteopedia.org/w/Odorant_binding_protein Odorant binding proteins –OBPs]&#039;&#039;&#039;,&#039;&#039;&#039;[http://proteopedia.org/wiki/index.php/Chemosensory_protein Chemosensory protein-CSP]&#039;&#039;&#039; ([[fig 5]]). Though bearing the same name and participating in the same function, OBP of vertebrates and arthropods are two distinct families with completely different structure and origin&amp;lt;ref name=&amp;quot;pelosi&amp;quot; /&amp;gt;. Arthropods&#039; OBP are composed of alpha helices, while vertebrates&#039; OBP belong to the [http://en.wikipedia.org/wiki/Lipocalin Lipocalins] super family and have a beta-barrel structure (for structure comparison, see [[table 1]] and [[fig 5]]). Recently, another family of protein has been suggested to play a role in ant chemical communication, &#039;&#039;&#039;[https://www.wikigenes.org/e/gene/e/10577.html Niemann-Pick type C2 protein-NPC2]&#039;&#039;&#039; &amp;lt;ref name=&amp;quot;ishida&amp;quot;&amp;gt;DOI: 10.1073/pnas.1323928111&amp;lt;/ref&amp;gt;. &lt;br /&gt;
[[Image:Fig 3 soluble proteins.png|thumb|center|upright=3|Figure 5. (a) An example for vertebrate&#039;s OBP-a pig OBP, PDB:[[1e06]]; (b) An example for insect&#039;s OBP- &#039;&#039;Bombyx mori&#039;&#039; PBP, PDB:[[1dqe]]; (c) An example for insect&#039;s CSP-&#039;&#039;Mamestra brassicae&#039;&#039; CSP2 PDB:[[1n8u]]]]&lt;br /&gt;
[[Image:Soluble proteins table.png|thumb|center|upright=2|Table 1. Summation of the main structure properties of soluble proteins types]]&lt;br /&gt;
&lt;br /&gt;
==Types of Soluble proteins in arthropods== &lt;br /&gt;
&amp;lt;StructureSection load=&#039;1OOH&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;&#039;&#039;Mamestra brassicae&#039;&#039; CSP2 PDB:[[1n8u]]&#039; scene=&#039;&#039;&amp;gt;&lt;br /&gt;
In each protein the consereved &amp;lt;font color=#FF7E00&amp;gt;&amp;lt;b&amp;gt;&#039;&#039;&#039;cysteins&#039;&#039;&#039;&amp;lt;/b&amp;gt;&amp;lt;/font&amp;gt;and the &amp;lt;font color=#FDEE00&amp;gt;&amp;lt;b&amp;gt;&#039;&#039;&#039;disulfide bonds&#039;&#039;&#039;&amp;lt;/b&amp;gt;&amp;lt;/font&amp;gt; are color marked.&lt;br /&gt;
*&#039;&#039;&#039;OBP&#039;&#039;&#039;&lt;br /&gt;
This family was the first soluble protein discovered in the chemosensory system of arthropods. Its general strcuture is of alpha helices that are compactly tied by 3 disulfid bridges formed by 6 consereved cystein residues. &lt;br /&gt;
The male fly of &#039;&#039;Drosophila melanogaster&#039;&#039; produce the pheromone 11-cis vaccenyl acetate which mediates aggregation behavior of other flys of the same species&amp;lt;ref&amp;gt;doi:10.1523/JNEUROSCI.0876-06.2006&amp;lt;/ref&amp;gt;. The detection of the pheromone, was shown to be mediated by pheromone-induced conformational shifts in the PBP, &amp;lt;scene name=&#039;61/614066/Lush/1&#039;&amp;gt;LUSH&amp;lt;/scene&amp;gt;. In fact, the trigering of the neuron was possible in the absence of the pheromone itself&amp;lt;ref&amp;gt;doi: m10.1016/j.cell.2008.04.046&amp;lt;/ref&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;CSP&#039;&#039;&#039;&lt;br /&gt;
This protein family which was discovered after the OBP family, though having a similar alpha helice structure, is shorter and bear only 4 conserved cysteins that forms 2 disulfide bridges. &lt;br /&gt;
In the moth &#039;&#039;Mamestra brassicae&#039;&#039; a member of the CSP family, CSPMbraA6, was isolated from the moth antennae. It was shown that the protein can bind &amp;lt;scene name=&#039;61/614066/Mamestra_brassicae_csp/1&#039;&amp;gt;three molecules of its ligand, 12-bromo-dodecanol&amp;lt;/scene&amp;gt; at the same time&amp;lt;ref&amp;gt;doi: 10.1073/pnas.0836654100&amp;lt;/ref&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;NPC2&#039;&#039;&#039;&lt;br /&gt;
Recently, a new family of proteins have been suggested to play a role as a soluble protein. Until now NPC2 proteins were known to carry lipids and cholesterol molecules in the cells&amp;lt;ref&amp;gt;doi: 10.1016/j.bbalip.2004.08.007&amp;lt;/ref&amp;gt;, yet a member of this family was isolated from the antennae of the ant&#039;&#039;Camponatus japonicus&#039;&#039;&amp;lt;ref name=&amp;quot;ishida&amp;quot; /&amp;gt;&amp;lt;ref&amp;gt;. This protein have a beta-barrel shape tied by 3 disulfide bridges formed by 6 conserved cystein residues (similar to vertebrates OBP). Another conserved feature is the &amp;lt;scene name=&#039;61/614066/Resid_in_the_cavity_gate/1&#039;&amp;gt;6 conserved hydrophobic residues at the gate of the cavity&amp;lt;/scene&amp;gt;, supposedly attracting the hydrophobic ligand to the cavity&amp;lt;ref&amp;gt;doi: 10.1074/jbc.M703848200.STRUCTURAL&amp;lt;/ref&amp;gt;. &lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== See also == &lt;br /&gt;
*[[Odorant_binding_protein_3D_structures]]&lt;br /&gt;
*For comprehensive explanation about quorum sensing please turn to Fuqua et al. (2001) &amp;lt;ref&amp;gt;DOI: 10.1146/annurev.genet.35.102401.090913 &amp;lt;/ref&amp;gt;.&lt;br /&gt;
*for more information about the protein-ligand interaction, you may go to [[Odorant binding protein]].&lt;br /&gt;
== References ==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Nurit Eliash</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Chemical_communication_in_arthropods&amp;diff=2368400</id>
		<title>Chemical communication in arthropods</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Chemical_communication_in_arthropods&amp;diff=2368400"/>
		<updated>2015-01-28T10:25:02Z</updated>

		<summary type="html">&lt;p&gt;Nurit Eliash: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;[[Image:Sensilla.png|thumb|upright=1.5|Figure 1: Vertebrate (a), and insect (b) sensilla. Figure 1 from Kaupp (2010), used with permission of Prof. U. Benjamin Kaupp.]] &lt;br /&gt;
[[Image:Signal trunsdution - Sanchez 2009.jpg|thumb|right|upright=2|Figure 2.(a) Schematic representation of the general structure of an insect olfactory hair; (b) The first molecular steps of the insect chemosensory signaling transduction pathway. Figure 1 from Sánchez-Gracia et al.(2009)&amp;lt;ref&amp;gt;doi: 10.1038/hdy.2009.55&amp;lt;/ref&amp;gt;, used with permission of Prof. Sa´nchez-Gracia.]]&lt;br /&gt;
 [[Image:Vieira and Rozas 2011 fig7.JPG|thumb|upright=1.5|Figure 3. The evolution of the Chemosensory System. Blue boxes represent the aquatic lifestyle. Right: Presence or absence of the chemosensory gene families in extant species. Branch lengths are not to scale. Figure 7 from Vieira and Rozas (2011), used with permission of Prof Julio Rozas &amp;lt;ref name=&amp;quot;Vieira and Rozas&amp;quot;&amp;gt;DOI: 10.1093/gbe/evr033&amp;lt;/ref&amp;gt;]] &lt;br /&gt;
&lt;br /&gt;
==The molecular basis of chemical communication==&lt;br /&gt;
The sense of smell, [http://en.wikipedia.org/wiki/Olfaction Olfaction] is a primary sense in nature. It plays a significant role in behaviors which are crucial for the organism survival: food searching, host and mating selection, and avoiding predators and pathogens &amp;lt;ref name=&amp;quot;kaupp&amp;quot;&amp;gt;DOI: 10.1038/nrn2789&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
In both [http://en.wikipedia.org/wiki/Arthropod arthropods] and [http://en.wikipedia.org/wiki/Vertebrate vertebrates] the detection of volatiles is completed by a complicated process which is mediated by soluble as well as transmembrane proteins &amp;lt;ref name=&amp;quot;pelosi&amp;quot;&amp;gt;DOI: 10.3389/fphys.2014.00320&amp;lt;/ref&amp;gt;.&lt;br /&gt;
It should be mentioned that the detection of [http://en.wikipedia.org/wiki/Pheromone pheromones] is also vital to microorganisms, as it regulates gene expression in what is termed [http://en.wikipedia.org/wiki/Quorum_sensing “quorum sensing”].  &lt;br /&gt;
In arthropods, most of what is known on chemosensory communication is based on insects&#039; research. The process begins when a volatile (mostly a small [http://en.wikipedia.org/wiki/Hydrophobe hydrophobic] molecule) enters the chemosensilla lymph of an insect, or the mucus of a vertebrate in the nasal cavity ([[fig 1]]). Both mediums are abundant in soluble proteins which binds to the hydrophobic molecules, solubilizes and carries it to the [http://en.wikipedia.org/wiki/Chemoreceptor chemoreceptors] on the dendritic membrane of the olfactory receptor neuron &amp;lt;ref name=&amp;quot;kaupp&amp;quot; /&amp;gt;&amp;lt;ref&amp;gt;Vogt RG (2005) Molecular basis of pheromone detection in insects. Comprehensive Insect Physiology, Biochemistry, Pharmacology and Molecular Biology, eds Gilbert LI, Iatro K, Gills S (Elsevier, London), Vol 3, pp 753–804.&amp;lt;/ref&amp;gt;.The chemical signal is there by translated into an electrical signal which can cause an immediate response, or further elaborate with other signals in the insect&#039;s mushroom bodies or vertebrate&#039;s brain ([[fig 2]])&amp;lt;ref&amp;gt;doi: 10.3389/fncel.2012.00048&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;doi: 10.1146/annurev-ento-120811-153635&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== What is the differences and similarities between Arthropods and Vertebrates? ==&lt;br /&gt;
 &lt;br /&gt;
Though functionally similar, receptors as well as soluble proteins are structurally and genetically unrelated in insects and vertebrates (see [[fig 3]] for the putative evolution of proteins involved in chemosensory system).   &lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;Receptors&#039;&#039;&#039; &lt;br /&gt;
Most of the vertebrates&#039; chemosensory receptors are metabotropic and belong to the [[G protein-coupled receptors]]. Once the volatile binds to the receptor it initiates intracellular signal transduction &amp;lt;ref&amp;gt;doi: 10.1016/S0167-4838(00)00167-9&amp;lt;/ref&amp;gt;. On the other hand, arthropods&#039; and insects&#039; chemoreceptors are composed of two subunits: [http://en.wikipedia.org/wiki/Olfactory_receptor Receptor] and [http://en.wikipedia.org/wiki/Co-receptor Co-receptor] that upon interaction with the volatile or the complex of volatile-soluble protein, are activated and serve as an [http://en.wikipedia.org/wiki/Ion_channel ion channel]. The opening of the ion channel changes the [http://en.wikipedia.org/wiki/Membrane_potential membrane potential], and starts the inter-cellular signal transduction&amp;lt;ref&amp;gt;Vogt RG (2005) Molecular basis of pheromone detection in insects. Comprehensive Insect Physiology, Biochemistry, Pharmacology and Molecular Biology, eds Gilbert LI, Iatro K, Gills S (Elsevier, London), Vol 3, pp 753–804.&amp;lt;/ref&amp;gt;.[[Image:Chemoreceptors-insects.jpg|thumb|center|upright=2.5|Figure 4: Types of insect receptors. Figure 1 from Kaupp (2010), used with permission of Prof. U. Benjamin Kaupp.]]    &lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;Soluble proteins&#039;&#039;&#039;&lt;br /&gt;
These proteins which are concentrated in the sensillar lymph, solubilize and carry the volatile molecules to the receptor. &lt;br /&gt;
There are two main known types of soluble proteins that are involved in arthropods&#039; chemical communication: &#039;&#039;&#039;[http://proteopedia.org/w/Odorant_binding_protein Odorant binding proteins –OBPs]&#039;&#039;&#039;,&#039;&#039;&#039;[http://proteopedia.org/wiki/index.php/Chemosensory_protein Chemosensory protein-CSP]&#039;&#039;&#039; ([[fig 5]]). Though bearing the same name and participating in the same function, OBP of vertebrates and arthropods are two distinct families with completely different structure and origin&amp;lt;ref name=&amp;quot;pelosi&amp;quot; /&amp;gt;. Arthropods&#039; OBP are composed of alpha helices, while vertebrates&#039; OBP belong to the [http://en.wikipedia.org/wiki/Lipocalin Lipocalins] super family and have a beta-barrel structure (for structure comparison, see [[table 1]] and [[fig 5]]). Recently, another family of protein has been suggested to play a role in ant chemical communication, &#039;&#039;&#039;[https://www.wikigenes.org/e/gene/e/10577.html Niemann-Pick type C2 protein-NPC2]&#039;&#039;&#039; &amp;lt;ref&amp;gt;DOI: 10.1073/pnas.1323928111&amp;lt;/ref&amp;gt;. &lt;br /&gt;
[[Image:Fig 3 soluble proteins.png|thumb|center|upright=3|Figure 5. (a) An example for vertebrate&#039;s OBP-a pig OBP, PDB:[[1e06]]; (b) An example for insect&#039;s OBP- &#039;&#039;Bombyx mori&#039;&#039; PBP, PDB:[[1dqe]]; (c) An example for insect&#039;s CSP-&#039;&#039;Mamestra brassicae&#039;&#039; CSP2 PDB:[[1n8u]]]]&lt;br /&gt;
[[Image:Soluble proteins table.png|thumb|center|upright=2|Table 1. Summation of the main structure properties of soluble proteins types]]&lt;br /&gt;
&lt;br /&gt;
==Types of Soluble proteins in arthropods== &lt;br /&gt;
&amp;lt;StructureSection load=&#039;1OOH&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;&#039;&#039;Mamestra brassicae&#039;&#039; CSP2 PDB:[[1n8u]]&#039; scene=&#039;&#039;&amp;gt;&lt;br /&gt;
In each protein the consereved &amp;lt;font color=#FF7E00&amp;gt;&amp;lt;b&amp;gt;&#039;&#039;&#039;cysteins&#039;&#039;&#039;&amp;lt;/b&amp;gt;&amp;lt;/font&amp;gt;and the &amp;lt;font color=#FDEE00&amp;gt;&amp;lt;b&amp;gt;&#039;&#039;&#039;disulfide bonds&#039;&#039;&#039;&amp;lt;/b&amp;gt;&amp;lt;/font&amp;gt; are color marked.&lt;br /&gt;
*&#039;&#039;&#039;OBP&#039;&#039;&#039;&lt;br /&gt;
This family was the first soluble protein discovered in the chemosensory system of arthropods. Its general strcuture is of alpha helices that are compactly tied by 3 disulfid bridges formed by 6 consereved cystein residues. &lt;br /&gt;
The male fly of &#039;&#039;Drosophila melanogaster&#039;&#039; produce the pheromone 11-cis vaccenyl acetate which mediates aggregation behavior of other flys of the same species&amp;lt;ref&amp;gt;doi:10.1523/JNEUROSCI.0876-06.2006&amp;lt;/ref&amp;gt;. The detection of the pheromone, was shown to be mediated by pheromone-induced conformational shifts in the PBP, &amp;lt;scene name=&#039;61/614066/Lush/1&#039;&amp;gt;LUSH&amp;lt;/scene&amp;gt;. In fact, the trigering of the neuron was possible in the absence of the pheromone itself&amp;lt;ref&amp;gt;doi: m10.1016/j.cell.2008.04.046&amp;lt;/ref&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;CSP&#039;&#039;&#039;&lt;br /&gt;
This protein family which was discovered after the OBP family, though having a simmilar alpha helice structure, is shorter and bear only 4 consereved cysteins that forms 2 disulfide bridges. &lt;br /&gt;
In the moth &#039;&#039;Mamestra brassicae&#039;&#039; a member of the CSP family, CSPMbraA6, was isolated from the moth antennae. It was shown that the protein can bind &amp;lt;scene name=&#039;61/614066/Mamestra_brassicae_csp/1&#039;&amp;gt;three molecules of its ligand, 12-bromo-dodecanol&amp;lt;/scene&amp;gt; at the same time&amp;lt;ref&amp;gt;doi: 10.1073/pnas.0836654100&amp;lt;/ref&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;NPC2&#039;&#039;&#039;&lt;br /&gt;
Proposed soluble protein in Camponatus &#039;&#039;japonicus antennae&#039;&#039;, bears &amp;lt;scene name=&#039;61/614066/Resid_in_the_cavity_gate/1&#039;&amp;gt;6 consereved residues at the gate of the cavity&amp;lt;/scene&amp;gt;&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== See also == &lt;br /&gt;
*[[Odorant_binding_protein_3D_structures]]&lt;br /&gt;
*For comprehensive explanation about quorum sensing please turn to Fuqua et al. (2001) &amp;lt;ref&amp;gt;DOI: 10.1146/annurev.genet.35.102401.090913 &amp;lt;/ref&amp;gt;.&lt;br /&gt;
*for more inforamtion about the protein-ligand interaction, you may go to [[Odorant binding protein]].&lt;br /&gt;
== References ==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Nurit Eliash</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Chemical_communication_in_arthropods&amp;diff=2368379</id>
		<title>Chemical communication in arthropods</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Chemical_communication_in_arthropods&amp;diff=2368379"/>
		<updated>2015-01-27T13:36:37Z</updated>

		<summary type="html">&lt;p&gt;Nurit Eliash: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;[[Image:Sensilla.png|thumb|upright=1.5|Figure 1: Vertebrate (a), and insect (b) sensilla. Figure 1 from Kaupp (2010), used with permission of Prof. U. Benjamin Kaupp.]] &lt;br /&gt;
[[Image:Signal trunsdution - Sanchez 2009.jpg|thumb|right|upright=2|Figure 2.(a) Schematic representation of the general structure of an insect olfactory hair; (b) The first molecular steps of the insect chemosensory signaling transduction pathway. Figure 1 from Sánchez-Gracia et al.(2009)&amp;lt;ref&amp;gt;doi: 10.1038/hdy.2009.55&amp;lt;/ref&amp;gt;, used with permission of Prof. Sa´nchez-Gracia.]]&lt;br /&gt;
 [[Image:Vieira and Rozas 2011 fig7.JPG|thumb|upright=1.5|Figure 3. The evolution of the Chemosensory System. Blue boxes represent the aquatic lifestyle. Right: Presence or absence of the chemosensory gene families in extant species. Branch lengths are not to scale. Figure 7 from Vieira and Rozas (2011), used with permission of Prof Julio Rozas &amp;lt;ref name=&amp;quot;Vieira and Rozas&amp;quot;&amp;gt;DOI: 10.1093/gbe/evr033&amp;lt;/ref&amp;gt;]] &lt;br /&gt;
&lt;br /&gt;
==The molecular basis of chemical communication==&lt;br /&gt;
The sense of smell, [http://en.wikipedia.org/wiki/Olfaction Olfaction] is a primary sense in nature. It plays a significant role in behaviors which are crucial for the organism survival: food searching, host and mating selection, and avoiding predators and pathogens &amp;lt;ref name=&amp;quot;kaupp&amp;quot;&amp;gt;DOI: 10.1038/nrn2789&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
In both [http://en.wikipedia.org/wiki/Arthropod arthropods] and [http://en.wikipedia.org/wiki/Vertebrate vertebrates] the detection of volatiles is completed by a complicated process which is mediated by soluble as well as transmembrane proteins &amp;lt;ref name=&amp;quot;pelosi&amp;quot;&amp;gt;DOI: 10.3389/fphys.2014.00320&amp;lt;/ref&amp;gt;.&lt;br /&gt;
It should be mentioned that the detection of [http://en.wikipedia.org/wiki/Pheromone pheromones] is also vital to microorganisms, as it regulates gene expression in what is termed [http://en.wikipedia.org/wiki/Quorum_sensing “quorum sensing”].  &lt;br /&gt;
In arthropods, most of what is known on chemosensory communication is based on insects&#039; research. The process begins when a volatile (mostly a small [http://en.wikipedia.org/wiki/Hydrophobe hydrophobic] molecule) enters the chemosensilla lymph of an insect, or the mucus of a vertebrate in the nasal cavity ([[fig 1]]). Both mediums are abundant in soluble proteins which binds to the hydrophobic molecules, solubilizes and carries it to the [http://en.wikipedia.org/wiki/Chemoreceptor chemoreceptors] on the dendritic membrane of the olfactory receptor neuron &amp;lt;ref name=&amp;quot;kaupp&amp;quot; /&amp;gt;&amp;lt;ref&amp;gt;Vogt RG (2005) Molecular basis of pheromone detection in insects. Comprehensive Insect Physiology, Biochemistry, Pharmacology and Molecular Biology, eds Gilbert LI, Iatro K, Gills S (Elsevier, London), Vol 3, pp 753–804.&amp;lt;/ref&amp;gt;.The chemical signal is there by translated into an electrical signal which can cause an immediate response, or further elaborate with other signals in the insect&#039;s mushroom bodies or vertebrate&#039;s brain ([[fig 2]])&amp;lt;ref&amp;gt;doi: 10.3389/fncel.2012.00048&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;doi: 10.1146/annurev-ento-120811-153635&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== What is the differences and similarities between Arthropods and Vertebrates? ==&lt;br /&gt;
 &lt;br /&gt;
Though functionally similar, receptors as well as soluble proteins are structurally and genetically unrelated in insects and vertebrates (see [[fig 3]] for the putative evolution of priteins involved in chemosensory system).   &lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;Receptors&#039;&#039;&#039; &lt;br /&gt;
Most of the vertebrates&#039; chemosensory receptors are metabotropic and belong to the [[G protein-coupled receptors]]. Once the volatile binds to the receptor it initiates intracellular signal transduction &amp;lt;ref&amp;gt;doi: 10.1016/S0167-4838(00)00167-9&amp;lt;/ref&amp;gt;. On the other hand, arthropods&#039; and insects&#039; chemoreceptors are composed of two subunits: [http://en.wikipedia.org/wiki/Olfactory_receptor Receptor] and [http://en.wikipedia.org/wiki/Co-receptor Co-receptor] that upon interaction with the volatile or the complex of volatile-soluble protein, are activated and serve as an [http://en.wikipedia.org/wiki/Ion_channel ion channel]. The opening of the ion channel changes the [http://en.wikipedia.org/wiki/Membrane_potential membrane potential], and starts the inter-cellular signal transduction&amp;lt;ref&amp;gt;Vogt RG (2005) Molecular basis of pheromone detection in insects. Comprehensive Insect Physiology, Biochemistry, Pharmacology and Molecular Biology, eds Gilbert LI, Iatro K, Gills S (Elsevier, London), Vol 3, pp 753–804.&amp;lt;/ref&amp;gt;.[[Image:Chemoreceptors-insects.jpg|thumb|center|upright=2.5|Figure 4: Types of insect receptors. Figure 1 from Kaupp (2010), used with permission of Prof. U. Benjamin Kaupp.]]    &lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;Soluble proteins&#039;&#039;&#039;&lt;br /&gt;
These proteins which are concentrated in the sensillar lymph, solubilize and carry the volatile molecules to the receptor. &lt;br /&gt;
There are two main known types of soluble proteins that are involved in arthropods&#039; chemical communication: &#039;&#039;&#039;[http://proteopedia.org/w/Odorant_binding_protein Odorant binding proteins –OBPs]&#039;&#039;&#039;,&#039;&#039;&#039;[http://proteopedia.org/wiki/index.php/Chemosensory_protein Chemosensory protein-CSP]&#039;&#039;&#039; ([[fig 5]]). Though bearing the same name and participating in the same function, OBP of vertebrates and arthropods are two distinct families with completely different structure and origin&amp;lt;ref name=&amp;quot;pelosi&amp;quot; /&amp;gt;. Arthropods&#039; OBP are composed of alpha helices, while vertebrates&#039; OBP belong to the [http://en.wikipedia.org/wiki/Lipocalin Lipocalins] super family and have a beta-barrel structure (for structure comparison, see [[table 1]] and [[fig 5]]). Recently, another family of protein has been suggested to play a role in ant chemical communication, &#039;&#039;&#039;[https://www.wikigenes.org/e/gene/e/10577.html Niemann-Pick type C2 protein-NPC2]&#039;&#039;&#039; &amp;lt;ref&amp;gt;DOI: 10.1073/pnas.1323928111&amp;lt;/ref&amp;gt;. &lt;br /&gt;
[[Image:Fig 3 soluble proteins.png|thumb|center|upright=3|Figure 5. (a) An example for vertebrate&#039;s OBP-a pig OBP, PDB:[[1e06]]; (b) An example for insect&#039;s OBP- &#039;&#039;Bombyx mori&#039;&#039; PBP, PDB:[[1dqe]]; (c) An example for insect&#039;s CSP-&#039;&#039;Mamestra brassicae&#039;&#039; CSP2 PDB:[[1n8u]]]]&lt;br /&gt;
[[Image:Soluble proteins table.png|thumb|center|upright=2|Table 1. Summation of the main structure properties of soluble proteins types]]&lt;br /&gt;
&lt;br /&gt;
==Types of Soluble proteins in arthropods== &lt;br /&gt;
&amp;lt;StructureSection load=&#039;1OOH&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;&#039;&#039;Mamestra brassicae&#039;&#039; CSP2 PDB:[[1n8u]]&#039; scene=&#039;&#039;&amp;gt;&lt;br /&gt;
In each protein the consereved &amp;lt;font color=#FF7E00&amp;gt;&amp;lt;b&amp;gt;&#039;&#039;&#039;cysteins&#039;&#039;&#039;&amp;lt;/b&amp;gt;&amp;lt;/font&amp;gt;and the &amp;lt;font color=#FDEE00&amp;gt;&amp;lt;b&amp;gt;&#039;&#039;&#039;disulfide bonds&#039;&#039;&#039;&amp;lt;/b&amp;gt;&amp;lt;/font&amp;gt; are color marked.&lt;br /&gt;
*&#039;&#039;&#039;OBP&#039;&#039;&#039;&lt;br /&gt;
This family was the first soluble protein discovered in the chemosensory system of arthropods. Its general strcuture is of alpha helices that are compactly tied by 3 disulfid bridges formed by 6 consereved cystein residues. &lt;br /&gt;
The male fly of &#039;&#039;Drosophila melanogaster&#039;&#039; produce the pheromone 11-cis vaccenyl acetate which mediates aggregation behavior of other flys of the same species&amp;lt;ref&amp;gt;doi:10.1523/JNEUROSCI.0876-06.2006&amp;lt;/ref&amp;gt;. The detection of the pheromone, was shown to be mediated by pheromone-induced conformational shifts in the PBP, &amp;lt;scene name=&#039;61/614066/Lush/1&#039;&amp;gt;LUSH&amp;lt;/scene&amp;gt;. In fact, the trigering of the neuron was possible in the absence of the pheromone itself&amp;lt;ref&amp;gt;doi: m10.1016/j.cell.2008.04.046&amp;lt;/ref&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;CSP&#039;&#039;&#039;&lt;br /&gt;
This protein family which was discovered after the OBP family, though having a simmilar alpha helice structure, is shorter and bear only 4 consereved cysteins that forms 2 disulfide bridges. &lt;br /&gt;
In the moth &#039;&#039;Mamestra brassicae&#039;&#039; a member of the CSP family, CSPMbraA6, was isolated from the moth antennae. It was shown that the protein can bind &amp;lt;scene name=&#039;61/614066/Mamestra_brassicae_csp/1&#039;&amp;gt;three molecules of its ligand, 12-bromo-dodecanol&amp;lt;/scene&amp;gt; at the same time&amp;lt;ref&amp;gt;doi: 10.1073/pnas.0836654100&amp;lt;/ref&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;NPC2&#039;&#039;&#039;&lt;br /&gt;
Proposed soluble protein in Camponatus &#039;&#039;japonicus antennae&#039;&#039;, bears &amp;lt;scene name=&#039;61/614066/Resid_in_the_cavity_gate/1&#039;&amp;gt;6 consereved residues at the gate of the cavity&amp;lt;/scene&amp;gt;&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== See also == &lt;br /&gt;
*[[Odorant_binding_protein_3D_structures]]&lt;br /&gt;
*For comprehensive explanation about quorum sensing please turn to Fuqua et al. (2001) &amp;lt;ref&amp;gt;DOI: 10.1146/annurev.genet.35.102401.090913 &amp;lt;/ref&amp;gt;.&lt;br /&gt;
*for more inforamtion about the protein-ligand interaction, you may go to [[Odorant binding protein]].&lt;br /&gt;
== References ==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Nurit Eliash</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Chemical_communication_in_arthropods&amp;diff=2368378</id>
		<title>Chemical communication in arthropods</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Chemical_communication_in_arthropods&amp;diff=2368378"/>
		<updated>2015-01-27T13:35:31Z</updated>

		<summary type="html">&lt;p&gt;Nurit Eliash: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;[[Image:Sensilla.png|thumb|upright=1.5|Figure 1: Vertebrate (a), and insect (b) sensilla. Figure 1 from Kaupp (2010), used with permission of Prof. U. Benjamin Kaupp.]] &lt;br /&gt;
[[Image:Signal trunsdution - Sanchez 2009.jpg|thumb|right|upright=2|Figure 2.(a) Schematic representation of the general structure of an insect olfactory hair; (b) The first molecular steps of the insect chemosensory signaling transduction pathway. Figure 1 from Sánchez-Gracia et al.(2009)&amp;lt;ref&amp;gt;doi: 10.1038/hdy.2009.55&amp;lt;/ref&amp;gt;, used with permission of Prof. Sa´nchez-Gracia.]]&lt;br /&gt;
 [[Image:Vieira and Rozas 2011 fig7.JPG|thumb|upright=1.5|Figure 3. The evolution of the Chemosensory System. Blue boxes represent the aquatic lifestyle. Right: Presence or absence of the chemosensory gene families in extant species. Branch lengths are not to scale. Figure 7 from Vieira and Rozas (2011), used with permission of Prof Julio Rozas &amp;lt;ref name=&amp;quot;Vieira and Rozas&amp;quot;&amp;gt;DOI: 10.1093/gbe/evr033&amp;lt;/ref&amp;gt;]] &lt;br /&gt;
&lt;br /&gt;
==The molecular basis of chemical communication==&lt;br /&gt;
The sense of smell, [http://en.wikipedia.org/wiki/Olfaction Olfaction] is a primary sense in nature. It plays a significant role in behaviors which are crucial for the organism survival: food searching, host and mating selection, and avoiding predators and pathogens &amp;lt;ref name=&amp;quot;kaupp&amp;quot;&amp;gt;DOI: 10.1038/nrn2789&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
In both [http://en.wikipedia.org/wiki/Arthropod arthropods] and [http://en.wikipedia.org/wiki/Vertebrate vertebrates] the detection of volatiles is completed by a complicated process which is mediated by soluble as well as transmembrane proteins &amp;lt;ref name=&amp;quot;pelosi&amp;quot;&amp;gt;DOI: 10.3389/fphys.2014.00320&amp;lt;/ref&amp;gt;.&lt;br /&gt;
It should be mentioned that the detection of [http://en.wikipedia.org/wiki/Pheromone pheromones] is also vital to microorganisms, as it regulates gene expression in what is termed [http://en.wikipedia.org/wiki/Quorum_sensing “quorum sensing”].  &lt;br /&gt;
In arthropods, most of what is known on chemosensory communication is based on insects&#039; research. The process begins when a volatile (mostly a small [http://en.wikipedia.org/wiki/Hydrophobe hydrophobic] molecule) enters the chemosensilla lymph of an insect, or the mucus of a vertebrate in the nasal cavity ([[fig 1]]). Both mediums are abundant in soluble proteins which binds to the hydrophobic molecules, solubilizes and carries it to the [http://en.wikipedia.org/wiki/Chemoreceptor chemoreceptors] on the dendritic membrane of the olfactory receptor neuron &amp;lt;ref name=&amp;quot;kaupp&amp;quot; /&amp;gt;&amp;lt;ref&amp;gt;Vogt RG (2005) Molecular basis of pheromone detection in insects. Comprehensive Insect Physiology, Biochemistry, Pharmacology and Molecular Biology, eds Gilbert LI, Iatro K, Gills S (Elsevier, London), Vol 3, pp 753–804.&amp;lt;/ref&amp;gt;.The chemical signal is there by translated into an electrical signal which can cause an immediate response, or further elaborate with other signals in the insect&#039;s mushroom bodies or vertebrate&#039;s brain ([[fig 2]])&amp;lt;ref&amp;gt;doi: 10.3389/fncel.2012.00048&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;doi: 10.1146/annurev-ento-120811-153635&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== What is the differences and similarities between Arthropods and Vertebrates? ==&lt;br /&gt;
 &lt;br /&gt;
Though functionally similar, receptors as well as soluble proteins are structurally and genetically unrelated in insects and vertebrates (see [[fig 3]] for the putative evolution of priteins involved in chemosensory system).   &lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;Receptors&#039;&#039;&#039; &lt;br /&gt;
Most of the vertebrates&#039; chemosensory receptors are metabotropic and belong to the [[G protein-coupled receptors]]. Once the volatile binds to the receptor it initiates intracellular signal transduction &amp;lt;ref&amp;gt;doi: 10.1016/S0167-4838(00)00167-9&amp;lt;/ref&amp;gt;. On the other hand, arthropods&#039; and insects&#039; chemoreceptors are composed of two subunits: [http://en.wikipedia.org/wiki/Olfactory_receptor Receptor] and [http://en.wikipedia.org/wiki/Co-receptor Co-receptor] that upon interaction with the volatile or the complex of volatile-soluble protein, are activated and serve as an [http://en.wikipedia.org/wiki/Ion_channel ion channel]. The opening of the ion channel changes the [http://en.wikipedia.org/wiki/Membrane_potential membrane potential], and starts the inter-cellular signal transduction&amp;lt;ref&amp;gt;Vogt RG (2005) Molecular basis of pheromone detection in insects. Comprehensive Insect Physiology, Biochemistry, Pharmacology and Molecular Biology, eds Gilbert LI, Iatro K, Gills S (Elsevier, London), Vol 3, pp 753–804.&amp;lt;/ref&amp;gt;.[[Image:Chemoreceptors-insects.jpg|thumb|center|upright=2.5|Figure 4: Types of insect receptors. Figure 1 from Kaupp (2010), used with permission of Prof. U. Benjamin Kaupp.]]    &lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;Soluble proteins&#039;&#039;&#039;&lt;br /&gt;
These proteins which are concentrated in the sensillar lymph, solubilize and carry the volatile molecules to the receptor. &lt;br /&gt;
There are two main known types of soluble proteins that are involved in arthropods&#039; chemical communication: &#039;&#039;&#039;[http://proteopedia.org/w/Odorant_binding_protein Odorant binding proteins –OBPs]&#039;&#039;&#039;,&#039;&#039;&#039;[http://proteopedia.org/wiki/index.php/Chemosensory_protein Chemosensory protein-CSP]&#039;&#039;&#039; ([[fig 5]]). Though bearing the same name and participating in the same function, OBP of vertebrates and arthropods are two distinct families with completely different structure and origin&amp;lt;ref name=&amp;quot;pelosi&amp;quot; /&amp;gt;. Arthropods&#039; OBP are composed of alpha helices, while vertebrates&#039; OBP belong to the [http://en.wikipedia.org/wiki/Lipocalin Lipocalins] super family and have a beta-barrel structure (for structure comparison, see [[table 1]] and [[fig 5]]). Recently, another family of protein has been suggested to play a role in ant chemical communication, &#039;&#039;&#039;[https://www.wikigenes.org/e/gene/e/10577.html Niemann-Pick type C2 protein-NPC2]&#039;&#039;&#039; &amp;lt;ref&amp;gt;DOI: 10.1073/pnas.1323928111&amp;lt;/ref&amp;gt;. &lt;br /&gt;
[[Image:Fig 3 soluble proteins.png|thumb|center|upright=3|Figure 5. (a) An example for vertebrate&#039;s OBP-a pig OBP, PDB:[[1e06]]; (b) An example for insect&#039;s OBP- &#039;&#039;Bombyx mori&#039;&#039; PBP, PDB:[[1dqe]]; (c) An example for insect&#039;s CSP-&#039;&#039;Mamestra brassicae&#039;&#039; CSP2 PDB:[[1n8u]]]]&lt;br /&gt;
[[Image:Soluble proteins table.png|thumb|center|upright=2|Table 1. Summation of the main structure properties of soluble proteins types]]&lt;br /&gt;
&lt;br /&gt;
==Types of Soluble proteins in arthropods== &lt;br /&gt;
&amp;lt;StructureSection load=&#039;1OOH&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;&#039;&#039;Mamestra brassicae&#039;&#039; CSP2 PDB:[[1n8u]]&#039; scene=&#039;&#039;&amp;gt;&lt;br /&gt;
In each protein the consereved Three &amp;lt;font color=#FF7E00&amp;gt;&amp;lt;b&amp;gt;&#039;&#039;&#039;cysteins&#039;&#039;&#039;&amp;lt;/b&amp;gt;&amp;lt;/font&amp;gt;and the Three &amp;lt;font color=#FDEE00&amp;gt;&amp;lt;b&amp;gt;&#039;&#039;&#039;disulfide bonds&#039;&#039;&#039;&amp;lt;/b&amp;gt;&amp;lt;/font&amp;gt; are color marked.&lt;br /&gt;
*&#039;&#039;&#039;OBP&#039;&#039;&#039;&lt;br /&gt;
This family was the first soluble protein discovered in the chemosensory system of arthropods. Its general strcuture is of alpha helices that are compactly tied by 3 disulfid bridges formed by 6 consereved cystein residues. &lt;br /&gt;
The male fly of &#039;&#039;Drosophila melanogaster&#039;&#039; produce the pheromone 11-cis vaccenyl acetate which mediates aggregation behavior of other flys of the same species&amp;lt;ref&amp;gt;doi:10.1523/JNEUROSCI.0876-06.2006&amp;lt;/ref&amp;gt;. The detection of the pheromone, was shown to be mediated by pheromone-induced conformational shifts in the PBP, &amp;lt;scene name=&#039;61/614066/Lush/1&#039;&amp;gt;LUSH&amp;lt;/scene&amp;gt;. In fact, the trigering of the neuron was possible in the absence of the pheromone itself&amp;lt;ref&amp;gt;doi: m10.1016/j.cell.2008.04.046&amp;lt;/ref&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;CSP&#039;&#039;&#039;&lt;br /&gt;
This protein family which was discovered after the OBP family, though having a simmilar alpha helice structure, is shorter and bear only 4 consereved cysteins that forms 2 disulfide bridges. &lt;br /&gt;
In the moth &#039;&#039;Mamestra brassicae&#039;&#039; a member of the CSP family, CSPMbraA6, was isolated from the moth antennae. It was shown that the protein can bind &amp;lt;scene name=&#039;61/614066/Mamestra_brassicae_csp/1&#039;&amp;gt;three molecules of its ligand, 12-bromo-dodecanol&amp;lt;/scene&amp;gt; at the same time&amp;lt;ref&amp;gt;doi: 10.1073/pnas.0836654100&amp;lt;/ref&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;NPC2&#039;&#039;&#039;&lt;br /&gt;
Proposed soluble protein in Camponatus &#039;&#039;japonicus antennae&#039;&#039;, bears &amp;lt;scene name=&#039;61/614066/Resid_in_the_cavity_gate/1&#039;&amp;gt;6 consereved residues at the gate of the cavity&amp;lt;/scene&amp;gt;&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== See also == &lt;br /&gt;
*[[Odorant_binding_protein_3D_structures]]&lt;br /&gt;
*For comprehensive explanation about quorum sensing please turn to Fuqua et al. (2001) &amp;lt;ref&amp;gt;DOI: 10.1146/annurev.genet.35.102401.090913 &amp;lt;/ref&amp;gt;.&lt;br /&gt;
*for more inforamtion about the protein-ligand interaction, you may go to [[Odorant binding protein]].&lt;br /&gt;
== References ==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Nurit Eliash</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Chemical_communication_in_arthropods&amp;diff=2368377</id>
		<title>Chemical communication in arthropods</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Chemical_communication_in_arthropods&amp;diff=2368377"/>
		<updated>2015-01-27T13:30:12Z</updated>

		<summary type="html">&lt;p&gt;Nurit Eliash: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;[[Image:Sensilla.png|thumb|upright=1.5|Figure 1: Vertebrate (a), and insect (b) sensilla. Figure 1 from Kaupp (2010), used with permission of Prof. U. Benjamin Kaupp.]] &lt;br /&gt;
[[Image:Signal trunsdution - Sanchez 2009.jpg|thumb|right|upright=2|Figure 2.(a) Schematic representation of the general structure of an insect olfactory hair; (b) The first molecular steps of the insect chemosensory signaling transduction pathway. Figure 1 from Sánchez-Gracia et al.(2009)&amp;lt;ref&amp;gt;doi: 10.1038/hdy.2009.55&amp;lt;/ref&amp;gt;, used with permission of Prof. Sa´nchez-Gracia.]]&lt;br /&gt;
 [[Image:Vieira and Rozas 2011 fig7.JPG|thumb|upright=1.5|Figure 3. The evolution of the Chemosensory System. Blue boxes represent the aquatic lifestyle. Right: Presence or absence of the chemosensory gene families in extant species. Branch lengths are not to scale. Figure 7 from Vieira and Rozas (2011), used with permission of Prof Julio Rozas &amp;lt;ref name=&amp;quot;Vieira and Rozas&amp;quot;&amp;gt;DOI: 10.1093/gbe/evr033&amp;lt;/ref&amp;gt;]] &lt;br /&gt;
&lt;br /&gt;
==The molecular basis of chemical communication==&lt;br /&gt;
The sense of smell, [http://en.wikipedia.org/wiki/Olfaction Olfaction] is a primary sense in nature. It plays a significant role in behaviors which are crucial for the organism survival: food searching, host and mating selection, and avoiding predators and pathogens &amp;lt;ref name=&amp;quot;kaupp&amp;quot;&amp;gt;DOI: 10.1038/nrn2789&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
In both [http://en.wikipedia.org/wiki/Arthropod arthropods] and [http://en.wikipedia.org/wiki/Vertebrate vertebrates] the detection of volatiles is completed by a complicated process which is mediated by soluble as well as transmembrane proteins &amp;lt;ref name=&amp;quot;pelosi&amp;quot;&amp;gt;DOI: 10.3389/fphys.2014.00320&amp;lt;/ref&amp;gt;.&lt;br /&gt;
It should be mentioned that the detection of [http://en.wikipedia.org/wiki/Pheromone pheromones] is also vital to microorganisms, as it regulates gene expression in what is termed [http://en.wikipedia.org/wiki/Quorum_sensing “quorum sensing”].  &lt;br /&gt;
In arthropods, most of what is known on chemosensory communication is based on insects&#039; research. The process begins when a volatile (mostly a small [http://en.wikipedia.org/wiki/Hydrophobe hydrophobic] molecule) enters the chemosensilla lymph of an insect, or the mucus of a vertebrate in the nasal cavity ([[fig 1]]). Both mediums are abundant in soluble proteins which binds to the hydrophobic molecules, solubilizes and carries it to the [http://en.wikipedia.org/wiki/Chemoreceptor chemoreceptors] on the dendritic membrane of the olfactory receptor neuron &amp;lt;ref name=&amp;quot;kaupp&amp;quot; /&amp;gt;&amp;lt;ref&amp;gt;Vogt RG (2005) Molecular basis of pheromone detection in insects. Comprehensive Insect Physiology, Biochemistry, Pharmacology and Molecular Biology, eds Gilbert LI, Iatro K, Gills S (Elsevier, London), Vol 3, pp 753–804.&amp;lt;/ref&amp;gt;.The chemical signal is there by translated into an electrical signal which can cause an immediate response, or further elaborate with other signals in the insect&#039;s mushroom bodies or vertebrate&#039;s brain ([[fig 2]])&amp;lt;ref&amp;gt;doi: 10.3389/fncel.2012.00048&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;doi: 10.1146/annurev-ento-120811-153635&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== What is the differences and similarities between Arthropods and Vertebrates? ==&lt;br /&gt;
 &lt;br /&gt;
Though functionally similar, receptors as well as soluble proteins are structurally and genetically unrelated in insects and vertebrates (see [[fig 3]] for the putative evolution of priteins involved in chemosensory system).   &lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;Receptors&#039;&#039;&#039; &lt;br /&gt;
Most of the vertebrates&#039; chemosensory receptors are metabotropic and belong to the [[G protein-coupled receptors]]. Once the volatile binds to the receptor it initiates intracellular signal transduction &amp;lt;ref&amp;gt;doi: 10.1016/S0167-4838(00)00167-9&amp;lt;/ref&amp;gt;. On the other hand, arthropods&#039; and insects&#039; chemoreceptors are composed of two subunits: [http://en.wikipedia.org/wiki/Olfactory_receptor Receptor] and [http://en.wikipedia.org/wiki/Co-receptor Co-receptor] that upon interaction with the volatile or the complex of volatile-soluble protein, are activated and serve as an [http://en.wikipedia.org/wiki/Ion_channel ion channel]. The opening of the ion channel changes the [http://en.wikipedia.org/wiki/Membrane_potential membrane potential], and starts the inter-cellular signal transduction&amp;lt;ref&amp;gt;Vogt RG (2005) Molecular basis of pheromone detection in insects. Comprehensive Insect Physiology, Biochemistry, Pharmacology and Molecular Biology, eds Gilbert LI, Iatro K, Gills S (Elsevier, London), Vol 3, pp 753–804.&amp;lt;/ref&amp;gt;.[[Image:Chemoreceptors-insects.jpg|thumb|center|upright=2.5|Figure 4: Types of insect receptors. Figure 1 from Kaupp (2010), used with permission of Prof. U. Benjamin Kaupp.]]    &lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;Soluble proteins&#039;&#039;&#039;&lt;br /&gt;
These proteins which are concentrated in the sensillar lymph, solubilize and carry the volatile molecules to the receptor. &lt;br /&gt;
There are two main known types of soluble proteins that are involved in arthropods&#039; chemical communication: &#039;&#039;&#039;[http://proteopedia.org/w/Odorant_binding_protein Odorant binding proteins –OBPs]&#039;&#039;&#039;,&#039;&#039;&#039;[http://proteopedia.org/wiki/index.php/Chemosensory_protein Chemosensory protein-CSP]&#039;&#039;&#039; ([[fig 5]]). Though bearing the same name and participating in the same function, OBP of vertebrates and arthropods are two distinct families with completely different structure and origin&amp;lt;ref name=&amp;quot;pelosi&amp;quot; /&amp;gt;. Arthropods&#039; OBP are composed of alpha helices, while vertebrates&#039; OBP belong to the [http://en.wikipedia.org/wiki/Lipocalin Lipocalins] super family and have a beta-barrel structure (for structure comparison, see [[table 1]] and [[fig 5]]). Recently, another family of protein has been suggested to play a role in ant chemical communication, &#039;&#039;&#039;[https://www.wikigenes.org/e/gene/e/10577.html Niemann-Pick type C2 protein-NPC2]&#039;&#039;&#039; &amp;lt;ref&amp;gt;DOI: 10.1073/pnas.1323928111&amp;lt;/ref&amp;gt;. &lt;br /&gt;
[[Image:Fig 3 soluble proteins.png|thumb|center|upright=3|Figure 5. (a) An example for vertebrate&#039;s OBP-a pig OBP, PDB:[[1e06]]; (b) An example for insect&#039;s OBP- &#039;&#039;Bombyx mori&#039;&#039; PBP, PDB:[[1dqe]]; (c) An example for insect&#039;s CSP-&#039;&#039;Mamestra brassicae&#039;&#039; CSP2 PDB:[[1n8u]]]]&lt;br /&gt;
[[Image:Soluble proteins table.png|thumb|center|upright=2|Table 1. Summation of the main structure properties of soluble proteins types]]&lt;br /&gt;
&lt;br /&gt;
==Types of Soluble proteins in arthropods== &lt;br /&gt;
&amp;lt;StructureSection load=&#039;1OOH&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;&#039;&#039;Mamestra brassicae&#039;&#039; CSP2 PDB:[[1n8u]]&#039; scene=&#039;&#039;&amp;gt;&lt;br /&gt;
*&#039;&#039;&#039;OBP&#039;&#039;&#039;&lt;br /&gt;
This family was the first soluble protein discovered in the chemosensory system of arthropods. Its general strcuture is of alpha helices that are compactly tied by 3 disulfid bridges formed by 6 consereved cystein residues. &lt;br /&gt;
The male fly of &#039;&#039;Drosophila melanogaster&#039;&#039; produce the pheromone 11-cis vaccenyl acetate which mediates aggregation behavior of other flys of the same species&amp;lt;ref&amp;gt;doi:10.1523/JNEUROSCI.0876-06.2006&amp;lt;/ref&amp;gt;. The detection of the pheromone, was shown to be mediated by pheromone-induced conformational shifts in the PBP, &amp;lt;scene name=&#039;61/614066/Lush/1&#039;&amp;gt;LUSH&amp;lt;/scene&amp;gt;. In fact, the trigering of the neuron was possible in the absence of the pheromone itself&amp;lt;ref&amp;gt;doi: m10.1016/j.cell.2008.04.046&amp;lt;/ref&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;CSP&#039;&#039;&#039;&lt;br /&gt;
This protein family which was discovered after the OBP family, though having a simmilar alpha helice structure, is shorter and bear only 4 consereved cysteins that forms 2 disulfide bridges. &lt;br /&gt;
In the moth &#039;&#039;Mamestra brassicae&#039;&#039; a member of the CSP family, CSPMbraA6, was isolated from the moth antennae. It was shown that the protein can bind &amp;lt;scene name=&#039;61/614066/Mamestra_brassicae_csp/1&#039;&amp;gt;three molecules of its ligand, 12-bromo-dodecanol&amp;lt;/scene&amp;gt; at the same time&amp;lt;ref&amp;gt;doi: 10.1073/pnas.0836654100&amp;lt;/ref&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;NPC2&#039;&#039;&#039;&lt;br /&gt;
Proposed soluble protein in Camponatus &#039;&#039;japonicus antennae&#039;&#039;, bears &amp;lt;scene name=&#039;61/614066/Resid_in_the_cavity_gate/1&#039;&amp;gt;6 consereved residues at the gate of the cavity&amp;lt;/scene&amp;gt;&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== See also == &lt;br /&gt;
*[[Odorant_binding_protein_3D_structures]]&lt;br /&gt;
*For comprehensive explanation about quorum sensing please turn to Fuqua et al. (2001) &amp;lt;ref&amp;gt;DOI: 10.1146/annurev.genet.35.102401.090913 &amp;lt;/ref&amp;gt;.&lt;br /&gt;
*for more inforamtion about the protein-ligand interaction, you may go to [[Odorant binding protein]].&lt;br /&gt;
== References ==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Nurit Eliash</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Chemical_communication_in_arthropods&amp;diff=2368376</id>
		<title>Chemical communication in arthropods</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Chemical_communication_in_arthropods&amp;diff=2368376"/>
		<updated>2015-01-27T13:20:18Z</updated>

		<summary type="html">&lt;p&gt;Nurit Eliash: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;[[Image:Sensilla.png|thumb|upright=1.5|Figure 1: Vertebrate (a), and insect (b) sensilla. Figure 1 from Kaupp (2010), used with permission of Prof. U. Benjamin Kaupp.]] &lt;br /&gt;
[[Image:Signal trunsdution - Sanchez 2009.jpg|thumb|right|upright=2|Figure 2.(a) Schematic representation of the general structure of an insect olfactory hair; (b) The first molecular steps of the insect chemosensory signaling transduction pathway. Figure 1 from Sánchez-Gracia et al.(2009)&amp;lt;ref&amp;gt;doi: 10.1038/hdy.2009.55&amp;lt;/ref&amp;gt;, used with permission of Prof. Sa´nchez-Gracia.]]&lt;br /&gt;
 [[Image:Vieira and Rozas 2011 fig7.JPG|thumb|upright=1.5|Figure 3. The evolution of the Chemosensory System. Blue boxes represent the aquatic lifestyle. Right: Presence or absence of the chemosensory gene families in extant species. Branch lengths are not to scale. Figure 7 from Vieira and Rozas (2011), used with permission of Prof Julio Rozas &amp;lt;ref name=&amp;quot;Vieira and Rozas&amp;quot;&amp;gt;DOI: 10.1093/gbe/evr033&amp;lt;/ref&amp;gt;]] &lt;br /&gt;
&lt;br /&gt;
==The molecular basis of chemical communication==&lt;br /&gt;
The sense of smell, [http://en.wikipedia.org/wiki/Olfaction Olfaction] is a primary sense in nature. It plays a significant role in behaviors which are crucial for the organism survival: food searching, host and mating selection, and avoiding predators and pathogens &amp;lt;ref name=&amp;quot;kaupp&amp;quot;&amp;gt;DOI: 10.1038/nrn2789&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
In both [http://en.wikipedia.org/wiki/Arthropod arthropods] and [http://en.wikipedia.org/wiki/Vertebrate vertebrates] the detection of volatiles is completed by a complicated process which is mediated by soluble as well as transmembrane proteins &amp;lt;ref name=&amp;quot;pelosi&amp;quot;&amp;gt;DOI: 10.3389/fphys.2014.00320&amp;lt;/ref&amp;gt;.&lt;br /&gt;
It should be mentioned that the detection of [http://en.wikipedia.org/wiki/Pheromone pheromones] is also vital to microorganisms, as it regulates gene expression in what is termed [http://en.wikipedia.org/wiki/Quorum_sensing “quorum sensing”].  &lt;br /&gt;
In arthropods, most of what is known on chemosensory communication is based on insects&#039; research. The process begins when a volatile (mostly a small [http://en.wikipedia.org/wiki/Hydrophobe hydrophobic] molecule) enters the chemosensilla lymph of an insect, or the mucus of a vertebrate in the nasal cavity ([[fig 1]]). Both mediums are abundant in soluble proteins which binds to the hydrophobic molecules, solubilizes and carries it to the [http://en.wikipedia.org/wiki/Chemoreceptor chemoreceptors] on the dendritic membrane of the olfactory receptor neuron &amp;lt;ref name=&amp;quot;kaupp&amp;quot; /&amp;gt;&amp;lt;ref&amp;gt;Vogt RG (2005) Molecular basis of pheromone detection in insects. Comprehensive Insect Physiology, Biochemistry, Pharmacology and Molecular Biology, eds Gilbert LI, Iatro K, Gills S (Elsevier, London), Vol 3, pp 753–804.&amp;lt;/ref&amp;gt;.The chemical signal is there by translated into an electrical signal which can cause an immediate response, or further elaborate with other signals in the insect&#039;s mushroom bodies or vertebrate&#039;s brain ([[fig 2]])&amp;lt;ref&amp;gt;doi: 10.3389/fncel.2012.00048&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;doi: 10.1146/annurev-ento-120811-153635&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== What is the differences and similarities between Arthropods and Vertebrates? ==&lt;br /&gt;
 &lt;br /&gt;
Though functionally similar, receptors as well as soluble proteins are structurally and genetically unrelated in insects and vertebrates (see [[fig 3]] for the putative evolution of priteins involved in chemosensory system).   &lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;Receptors&#039;&#039;&#039; &lt;br /&gt;
Most of the vertebrates&#039; chemosensory receptors are metabotropic and belong to the [[G protein-coupled receptors]]. Once the volatile binds to the receptor it initiates intracellular signal transduction &amp;lt;ref&amp;gt;doi: 10.1016/S0167-4838(00)00167-9&amp;lt;/ref&amp;gt;. On the other hand, arthropods&#039; and insects&#039; chemoreceptors are composed of two subunits: [http://en.wikipedia.org/wiki/Olfactory_receptor Receptor] and [http://en.wikipedia.org/wiki/Co-receptor Co-receptor] that upon interaction with the volatile or the complex of volatile-soluble protein, are activated and serve as an [http://en.wikipedia.org/wiki/Ion_channel ion channel]. The opening of the ion channel changes the [http://en.wikipedia.org/wiki/Membrane_potential membrane potential], and starts the inter-cellular signal transduction&amp;lt;ref&amp;gt;Vogt RG (2005) Molecular basis of pheromone detection in insects. Comprehensive Insect Physiology, Biochemistry, Pharmacology and Molecular Biology, eds Gilbert LI, Iatro K, Gills S (Elsevier, London), Vol 3, pp 753–804.&amp;lt;/ref&amp;gt;.[[Image:Chemoreceptors-insects.jpg|thumb|center|upright=2.5|Figure 4: Types of insect receptors. Figure 1 from Kaupp (2010), used with permission of Prof. U. Benjamin Kaupp.]]    &lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;Soluble proteins&#039;&#039;&#039;&lt;br /&gt;
These proteins which are concentrated in the sensillar lymph, solubilize and carry the volatile molecules to the receptor. &lt;br /&gt;
There are two main known types of soluble proteins that are involved in arthropods&#039; chemical communication: &#039;&#039;&#039;[http://proteopedia.org/w/Odorant_binding_protein Odorant binding proteins –OBPs]&#039;&#039;&#039;,&#039;&#039;&#039;[http://proteopedia.org/wiki/index.php/Chemosensory_protein Chemosensory protein-CSP]&#039;&#039;&#039; ([[fig 5]]). Though bearing the same name and participating in the same function, OBP of vertebrates and arthropods are two distinct families with completely different structure and origin&amp;lt;ref name=&amp;quot;pelosi&amp;quot; /&amp;gt;. Arthropods&#039; OBP are composed of alpha helices, while vertebrates&#039; OBP belong to the [http://en.wikipedia.org/wiki/Lipocalin Lipocalins] super family and have a beta-barrel structure (for structure comparison, see [[table 1]] and [[fig 5]]). Recently, another family of protein has been suggested to play a role in ant chemical communication, &#039;&#039;&#039;[https://www.wikigenes.org/e/gene/e/10577.html Niemann-Pick type C2 protein-NPC2]&#039;&#039;&#039; &amp;lt;ref&amp;gt;DOI: 10.1073/pnas.1323928111&amp;lt;/ref&amp;gt;. &lt;br /&gt;
[[Image:Fig 3 soluble proteins.png|thumb|center|upright=3|Figure 5. (a) An example for vertebrate&#039;s OBP-a pig OBP, PDB:[[1e06]]; (b) An example for insect&#039;s OBP- &#039;&#039;Bombyx mori&#039;&#039; PBP, PDB:[[1dqe]]; (c) An example for insect&#039;s CSP-&#039;&#039;Mamestra brassicae&#039;&#039; CSP2 PDB:[[1n8u]]]]&lt;br /&gt;
[[Image:Soluble proteins table.png|thumb|center|upright=2|Table 1. Summation of the main structure properties of soluble proteins types]]&lt;br /&gt;
&lt;br /&gt;
==Types of Soluble proteins in arthropods== &lt;br /&gt;
&amp;lt;StructureSection load=&#039;1OOH&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;&#039;&#039;Mamestra brassicae&#039;&#039; CSP2 PDB:[[1n8u]]&#039; scene=&#039;&#039;&amp;gt;&lt;br /&gt;
*&#039;&#039;&#039;OBP&#039;&#039;&#039;&lt;br /&gt;
This family was the first soluble protein discovered in the chemosensory system of arthropods. Its general strcuture is of alpha helices that are compactly tied by 3 disulfid bridges formed by 6 consereved cystein residues. &lt;br /&gt;
The male fly of &#039;&#039;Drosophila melanogaster&#039;&#039; produce the pheromone 11-cis vaccenyl acetate which mediates aggregation behavior of other flys of the same species&amp;lt;ref&amp;gt;doi:10.1523/JNEUROSCI.0876-06.2006&amp;lt;/ref&amp;gt;. The detection of the pheromone, was shown to be mediated by pheromone-induced conformational shifts in the PBP, &amp;lt;scene name=&#039;61/614066/Lush/1&#039;&amp;gt;LUSH&amp;lt;/scene&amp;gt;. In fact, the trigering of the neuron was possible in the absence of the pheromone itself&amp;lt;ref&amp;gt;doi: m10.1016/j.cell.2008.04.046&amp;lt;/ref&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;CSP&#039;&#039;&#039;&lt;br /&gt;
This protein family which was discovered after the OBP family, though having a simmilar alpha helice structure, is shorter and bear 4 consereved cysteins that forms 2 disulfide bridges. &lt;br /&gt;
&lt;br /&gt;
In the moth &#039;&#039;Mamestra brassicae&#039;&#039; &lt;br /&gt;
&lt;br /&gt;
&amp;lt;scene name=&#039;61/614066/Mamestra_brassicae_csp/1&#039;&amp;gt;chemosensory protein&amp;lt;/scene&amp;gt; in complex with its ligand bromo-dodecanol. &lt;br /&gt;
&lt;br /&gt;
&amp;lt;ref&amp;gt;doi: 10.1073/pnas.0836654100&amp;lt;/ref&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;NPC2&#039;&#039;&#039;&lt;br /&gt;
Proposed soluble protein in Camponatus &#039;&#039;japonicus antennae&#039;&#039;, bears &amp;lt;scene name=&#039;61/614066/Resid_in_the_cavity_gate/1&#039;&amp;gt;6 consereved residues at the gate of the cavity&amp;lt;/scene&amp;gt;&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== See also == &lt;br /&gt;
*[[Odorant_binding_protein_3D_structures]]&lt;br /&gt;
*For comprehensive explanation about quorum sensing please turn to Fuqua et al. (2001) &amp;lt;ref&amp;gt;DOI: 10.1146/annurev.genet.35.102401.090913 &amp;lt;/ref&amp;gt;.&lt;br /&gt;
*for more inforamtion about the protein-ligand interaction, you may go to [[Odorant binding protein]].&lt;br /&gt;
== References ==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Nurit Eliash</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Chemical_communication_in_arthropods&amp;diff=2368375</id>
		<title>Chemical communication in arthropods</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Chemical_communication_in_arthropods&amp;diff=2368375"/>
		<updated>2015-01-27T13:11:23Z</updated>

		<summary type="html">&lt;p&gt;Nurit Eliash: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;[[Image:Sensilla.png|thumb|upright=1.5|Figure 1: Vertebrate (a), and insect (b) sensilla. Figure 1 from Kaupp (2010), used with permission of Prof. U. Benjamin Kaupp.]] &lt;br /&gt;
[[Image:Signal trunsdution - Sanchez 2009.jpg|thumb|right|upright=2|Figure 2.(a) Schematic representation of the general structure of an insect olfactory hair; (b) The first molecular steps of the insect chemosensory signaling transduction pathway. Figure 1 from Sánchez-Gracia et al.(2009)&amp;lt;ref&amp;gt;doi: 10.1038/hdy.2009.55&amp;lt;/ref&amp;gt;, used with permission of Prof. Sa´nchez-Gracia.]]&lt;br /&gt;
 [[Image:Vieira and Rozas 2011 fig7.JPG|thumb|upright=1.5|Figure 3. The evolution of the Chemosensory System. Blue boxes represent the aquatic lifestyle. Right: Presence or absence of the chemosensory gene families in extant species. Branch lengths are not to scale. Figure 7 from Vieira and Rozas (2011), used with permission of Prof Julio Rozas &amp;lt;ref name=&amp;quot;Vieira and Rozas&amp;quot;&amp;gt;DOI: 10.1093/gbe/evr033&amp;lt;/ref&amp;gt;]] &lt;br /&gt;
&lt;br /&gt;
==The molecular basis of chemical communication==&lt;br /&gt;
The sense of smell, [http://en.wikipedia.org/wiki/Olfaction Olfaction] is a primary sense in nature. It plays a significant role in behaviors which are crucial for the organism survival: food searching, host and mating selection, and avoiding predators and pathogens &amp;lt;ref name=&amp;quot;kaupp&amp;quot;&amp;gt;DOI: 10.1038/nrn2789&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
In both [http://en.wikipedia.org/wiki/Arthropod arthropods] and [http://en.wikipedia.org/wiki/Vertebrate vertebrates] the detection of volatiles is completed by a complicated process which is mediated by soluble as well as transmembrane proteins &amp;lt;ref name=&amp;quot;pelosi&amp;quot;&amp;gt;DOI: 10.3389/fphys.2014.00320&amp;lt;/ref&amp;gt;.&lt;br /&gt;
It should be mentioned that the detection of [http://en.wikipedia.org/wiki/Pheromone pheromones] is also vital to microorganisms, as it regulates gene expression in what is termed [http://en.wikipedia.org/wiki/Quorum_sensing “quorum sensing”].  &lt;br /&gt;
In arthropods, most of what is known on chemosensory communication is based on insects&#039; research. The process begins when a volatile (mostly a small [http://en.wikipedia.org/wiki/Hydrophobe hydrophobic] molecule) enters the chemosensilla lymph of an insect, or the mucus of a vertebrate in the nasal cavity ([[fig 1]]). Both mediums are abundant in soluble proteins which binds to the hydrophobic molecules, solubilizes and carries it to the [http://en.wikipedia.org/wiki/Chemoreceptor chemoreceptors] on the dendritic membrane of the olfactory receptor neuron &amp;lt;ref name=&amp;quot;kaupp&amp;quot; /&amp;gt;&amp;lt;ref&amp;gt;Vogt RG (2005) Molecular basis of pheromone detection in insects. Comprehensive Insect Physiology, Biochemistry, Pharmacology and Molecular Biology, eds Gilbert LI, Iatro K, Gills S (Elsevier, London), Vol 3, pp 753–804.&amp;lt;/ref&amp;gt;.The chemical signal is there by translated into an electrical signal which can cause an immediate response, or further elaborate with other signals in the insect&#039;s mushroom bodies or vertebrate&#039;s brain ([[fig 2]])&amp;lt;ref&amp;gt;doi: 10.3389/fncel.2012.00048&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;doi: 10.1146/annurev-ento-120811-153635&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== What is the differences and similarities between Arthropods and Vertebrates? ==&lt;br /&gt;
 &lt;br /&gt;
Though functionally similar, receptors as well as soluble proteins are structurally and genetically unrelated in insects and vertebrates (see [[fig 3]] for the putative evolution of priteins involved in chemosensory system).   &lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;Receptors&#039;&#039;&#039; &lt;br /&gt;
Most of the vertebrates&#039; chemosensory receptors are metabotropic and belong to the [[G protein-coupled receptors]]. Once the volatile binds to the receptor it initiates intracellular signal transduction &amp;lt;ref&amp;gt;doi: 10.1016/S0167-4838(00)00167-9&amp;lt;/ref&amp;gt;. On the other hand, arthropods&#039; and insects&#039; chemoreceptors are composed of two subunits: [http://en.wikipedia.org/wiki/Olfactory_receptor Receptor] and [http://en.wikipedia.org/wiki/Co-receptor Co-receptor] that upon interaction with the volatile or the complex of volatile-soluble protein, are activated and serve as an [http://en.wikipedia.org/wiki/Ion_channel ion channel]. The opening of the ion channel changes the [http://en.wikipedia.org/wiki/Membrane_potential membrane potential], and starts the inter-cellular signal transduction&amp;lt;ref&amp;gt;Vogt RG (2005) Molecular basis of pheromone detection in insects. Comprehensive Insect Physiology, Biochemistry, Pharmacology and Molecular Biology, eds Gilbert LI, Iatro K, Gills S (Elsevier, London), Vol 3, pp 753–804.&amp;lt;/ref&amp;gt;.[[Image:Chemoreceptors-insects.jpg|thumb|center|upright=2.5|Figure 4: Types of insect receptors. Figure 1 from Kaupp (2010), used with permission of Prof. U. Benjamin Kaupp.]]    &lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;Soluble proteins&#039;&#039;&#039;&lt;br /&gt;
These proteins which are concentrated in the sensillar lymph, solubilize and carry the volatile molecules to the receptor. &lt;br /&gt;
There are two main known types of soluble proteins that are involved in arthropods&#039; chemical communication: &#039;&#039;&#039;[http://proteopedia.org/w/Odorant_binding_protein Odorant binding proteins –OBPs]&#039;&#039;&#039;,&#039;&#039;&#039;[http://proteopedia.org/wiki/index.php/Chemosensory_protein Chemosensory protein-CSP]&#039;&#039;&#039; ([[fig 5]]). Though bearing the same name and participating in the same function, OBP of vertebrates and arthropods are two distinct families with completely different structure and origin&amp;lt;ref name=&amp;quot;pelosi&amp;quot; /&amp;gt;. Arthropods&#039; OBP are composed of alpha helices, while vertebrates&#039; OBP belong to the [http://en.wikipedia.org/wiki/Lipocalin Lipocalins] super family and have a beta-barrel structure (for structure comparison, see [[table 1]] and [[fig 5]]). Recently, another family of protein has been suggested to play a role in ant chemical communication, &#039;&#039;&#039;[https://www.wikigenes.org/e/gene/e/10577.html Niemann-Pick type C2 protein-NPC2]&#039;&#039;&#039; &amp;lt;ref&amp;gt;DOI: 10.1073/pnas.1323928111&amp;lt;/ref&amp;gt;. &lt;br /&gt;
[[Image:Fig 3 soluble proteins.png|thumb|center|upright=3|Figure 5. (a) An example for vertebrate&#039;s OBP-a pig OBP, PDB:[[1e06]]; (b) An example for insect&#039;s OBP- &#039;&#039;Bombyx mori&#039;&#039; PBP, PDB:[[1dqe]]; (c) An example for insect&#039;s CSP-&#039;&#039;Mamestra brassicae&#039;&#039; CSP2 PDB:[[1n8u]]]]&lt;br /&gt;
[[Image:Soluble proteins table.png|thumb|center|upright=2|Table 1. Summation of the main structure properties of soluble proteins types]]&lt;br /&gt;
&lt;br /&gt;
==Types of Soluble proteins in arthropods== &lt;br /&gt;
&amp;lt;StructureSection load=&#039;1OOH&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;&#039;&#039;Mamestra brassicae&#039;&#039; CSP2 PDB:[[1n8u]]&#039; scene=&#039;&#039;&amp;gt;&lt;br /&gt;
*&#039;&#039;&#039;OBP&#039;&#039;&#039;&lt;br /&gt;
The male fly of &#039;&#039;Drosophila melanogaster&#039;&#039; produce the pheromone 11-cis vaccenyl acetate which mediates aggregation behavior of other flys of the same species&amp;lt;ref&amp;gt;doi:10.1523/JNEUROSCI.0876-06.2006&amp;lt;/ref&amp;gt;. The detection of the pheromone, was shown to be mediated by pheromone-induced conformational shifts in the PBP, &amp;lt;scene name=&#039;61/614066/Lush/1&#039;&amp;gt;LUSH&amp;lt;/scene&amp;gt;. In fact, the trigering of the neuron was possible in the absence of the pheromone itself&amp;lt;ref&amp;gt;doi: m10.1016/j.cell.2008.04.046&amp;lt;/ref&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;CSP&#039;&#039;&#039;&lt;br /&gt;
In the moth &#039;&#039;Mamestra brassicae&#039;&#039; &lt;br /&gt;
&lt;br /&gt;
&amp;lt;scene name=&#039;61/614066/Mamestra_brassicae_csp/1&#039;&amp;gt;chemosensory protein&amp;lt;/scene&amp;gt; in complex with its ligand bromo-dodecanol. &lt;br /&gt;
&lt;br /&gt;
&amp;lt;ref&amp;gt;doi: 10.1073/pnas.0836654100&amp;lt;/ref&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;NPC2&#039;&#039;&#039;&lt;br /&gt;
Proposed soluble protein in Camponatus &#039;&#039;japonicus antennae&#039;&#039;, bears &amp;lt;scene name=&#039;61/614066/Resid_in_the_cavity_gate/1&#039;&amp;gt;6 consereved residues at the gate of the cavity&amp;lt;/scene&amp;gt;&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== See also == &lt;br /&gt;
*[[Odorant_binding_protein_3D_structures]]&lt;br /&gt;
*For comprehensive explanation about quorum sensing please turn to Fuqua et al. (2001) &amp;lt;ref&amp;gt;DOI: 10.1146/annurev.genet.35.102401.090913 &amp;lt;/ref&amp;gt;.&lt;br /&gt;
*for more inforamtion about the protein-ligand interaction, you may go to [[Odorant binding protein]].&lt;br /&gt;
== References ==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Nurit Eliash</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Chemical_communication_in_arthropods&amp;diff=2368374</id>
		<title>Chemical communication in arthropods</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Chemical_communication_in_arthropods&amp;diff=2368374"/>
		<updated>2015-01-27T13:04:16Z</updated>

		<summary type="html">&lt;p&gt;Nurit Eliash: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;[[Image:Sensilla.png|thumb|upright=1.5|Figure 1: Vertebrate (a), and insect (b) sensilla. Figure 1 from Kaupp (2010), used with permission of Prof. U. Benjamin Kaupp.]] &lt;br /&gt;
[[Image:Signal trunsdution - Sanchez 2009.jpg|thumb|right|upright=2|Figure 2.(a) Schematic representation of the general structure of an insect olfactory hair; (b) The first molecular steps of the insect chemosensory signaling transduction pathway. Figure 1 from Sánchez-Gracia et al.(2009)&amp;lt;ref&amp;gt;doi: 10.1038/hdy.2009.55&amp;lt;/ref&amp;gt;, used with permission of Prof. Sa´nchez-Gracia.]]&lt;br /&gt;
 [[Image:Vieira and Rozas 2011 fig7.JPG|thumb|upright=1.5|Figure 3. The evolution of the Chemosensory System. Blue boxes represent the aquatic lifestyle. Right: Presence or absence of the chemosensory gene families in extant species. Branch lengths are not to scale. Figure 7 from Vieira and Rozas (2011), used with permission of Prof Julio Rozas &amp;lt;ref name=&amp;quot;Vieira and Rozas&amp;quot;&amp;gt;DOI: 10.1093/gbe/evr033&amp;lt;/ref&amp;gt;]] &lt;br /&gt;
&lt;br /&gt;
==The molecular basis of chemical communication==&lt;br /&gt;
The sense of smell, [http://en.wikipedia.org/wiki/Olfaction Olfaction] is a primary sense in nature. It plays a significant role in behaviors which are crucial for the organism survival: food searching, host and mating selection, and avoiding predators and pathogens &amp;lt;ref name=&amp;quot;kaupp&amp;quot;&amp;gt;DOI: 10.1038/nrn2789&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
In both [http://en.wikipedia.org/wiki/Arthropod arthropods] and [http://en.wikipedia.org/wiki/Vertebrate vertebrates] the detection of volatiles is completed by a complicated process which is mediated by soluble as well as transmembrane proteins &amp;lt;ref name=&amp;quot;pelosi&amp;quot;&amp;gt;DOI: 10.3389/fphys.2014.00320&amp;lt;/ref&amp;gt;.&lt;br /&gt;
It should be mentioned that the detection of [http://en.wikipedia.org/wiki/Pheromone pheromones] is also vital to microorganisms, as it regulates gene expression in what is termed [http://en.wikipedia.org/wiki/Quorum_sensing “quorum sensing”].  &lt;br /&gt;
In arthropods, most of what is known on chemosensory communication is based on insects&#039; research. The process begins when a volatile (mostly a small [http://en.wikipedia.org/wiki/Hydrophobe hydrophobic] molecule) enters the chemosensilla lymph of an insect, or the mucus of a vertebrate in the nasal cavity ([[fig 1]]). Both mediums are abundant in soluble proteins which binds to the hydrophobic molecules, solubilizes and carries it to the [http://en.wikipedia.org/wiki/Chemoreceptor chemoreceptors] on the dendritic membrane of the olfactory receptor neuron &amp;lt;ref name=&amp;quot;kaupp&amp;quot; /&amp;gt;&amp;lt;ref&amp;gt;Vogt RG (2005) Molecular basis of pheromone detection in insects. Comprehensive Insect Physiology, Biochemistry, Pharmacology and Molecular Biology, eds Gilbert LI, Iatro K, Gills S (Elsevier, London), Vol 3, pp 753–804.&amp;lt;/ref&amp;gt;.The chemical signal is there by translated into an electrical signal which can cause an immediate response, or further elaborate with other signals in the insect&#039;s mushroom bodies or vertebrate&#039;s brain ([[fig 2]])&amp;lt;ref&amp;gt;doi: 10.3389/fncel.2012.00048&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;doi: 10.1146/annurev-ento-120811-153635&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== What is the differences and similarities between Arthropods and Vertebrates? ==&lt;br /&gt;
 &lt;br /&gt;
Though functionally similar, receptors as well as soluble proteins are structurally and genetically unrelated in insects and vertebrates (see [[fig 3]] for the putative evolution of priteins involved in chemosensory system).   &lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;Receptors&#039;&#039;&#039; &lt;br /&gt;
Most of the vertebrates&#039; chemosensory receptors are metabotropic and belong to the [[G protein-coupled receptors]]. Once the volatile binds to the receptor it initiates intracellular signal transduction &amp;lt;ref&amp;gt;doi: 10.1016/S0167-4838(00)00167-9&amp;lt;/ref&amp;gt;. On the other hand, arthropods&#039; and insects&#039; chemoreceptors are composed of two subunits: [http://en.wikipedia.org/wiki/Olfactory_receptor Receptor] and [http://en.wikipedia.org/wiki/Co-receptor Co-receptor] that upon interaction with the volatile or the complex of volatile-soluble protein, are activated and serve as an [http://en.wikipedia.org/wiki/Ion_channel ion channel]. The opening of the ion channel changes the [http://en.wikipedia.org/wiki/Membrane_potential membrane potential], and starts the inter-cellular signal transduction&amp;lt;ref&amp;gt;Vogt RG (2005) Molecular basis of pheromone detection in insects. Comprehensive Insect Physiology, Biochemistry, Pharmacology and Molecular Biology, eds Gilbert LI, Iatro K, Gills S (Elsevier, London), Vol 3, pp 753–804.&amp;lt;/ref&amp;gt;.[[Image:Chemoreceptors-insects.jpg|thumb|center|upright=2.5|Figure 4: Types of insect receptors. Figure 1 from Kaupp (2010), used with permission of Prof. U. Benjamin Kaupp.]]    &lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;Soluble proteins&#039;&#039;&#039;&lt;br /&gt;
These proteins which are concentrated in the sensillar lymph, solubilize and carry the volatile molecules to the receptor. &lt;br /&gt;
There are two main known types of soluble proteins that are involved in arthropods&#039; chemical communication: &#039;&#039;&#039;[http://proteopedia.org/w/Odorant_binding_protein Odorant binding proteins –OBPs]&#039;&#039;&#039;,&#039;&#039;&#039;[http://proteopedia.org/wiki/index.php/Chemosensory_protein Chemosensory protein-CSP]&#039;&#039;&#039; ([[fig 5]]). Though bearing the same name and participating in the same function, OBP of vertebrates and arthropods are two distinct families with completely different structure and origin&amp;lt;ref name=&amp;quot;pelosi&amp;quot; /&amp;gt;. Arthropods&#039; OBP are composed of alpha helices, while vertebrates&#039; OBP belong to the [http://en.wikipedia.org/wiki/Lipocalin Lipocalins] super family and have a beta-barrel structure (for structure comparison, see [[table 1]] and [[fig 5]]). Recently, another family of protein has been suggested to play a role in ant chemical communication, &#039;&#039;&#039;[https://www.wikigenes.org/e/gene/e/10577.html Niemann-Pick type C2 protein-NPC2]&#039;&#039;&#039; &amp;lt;ref&amp;gt;DOI: 10.1073/pnas.1323928111&amp;lt;/ref&amp;gt;. &lt;br /&gt;
[[Image:Fig 3 soluble proteins.png|thumb|center|upright=3|Figure 5. (a) An example for vertebrate&#039;s OBP-a pig OBP, PDB:[[1e06]]; (b) An example for insect&#039;s OBP- &#039;&#039;Bombyx mori&#039;&#039; PBP, PDB:[[1dqe]]; (c) An example for insect&#039;s CSP-&#039;&#039;Mamestra brassicae&#039;&#039; CSP2 PDB:[[1n8u]]]]&lt;br /&gt;
[[Image:Soluble proteins table.png|thumb|center|upright=2|Table 1. Summation of the main structure properties of soluble proteins types]]&lt;br /&gt;
&lt;br /&gt;
==Types of Soluble proteins in arthropods== &lt;br /&gt;
&amp;lt;StructureSection load=&#039;1OOH&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;&#039;&#039;Mamestra brassicae&#039;&#039; CSP2 PDB:[[1n8u]]&#039; scene=&#039;&#039;&amp;gt;&lt;br /&gt;
*&#039;&#039;&#039;OBP&#039;&#039;&#039;&lt;br /&gt;
The male fly of &#039;&#039;Drosophila melanogaster&#039;&#039; produce the pheromone 11-cis vaccenyl acetate which mediates aggregation behavior of other flys of the same species&amp;lt;ref&amp;gt;doi:10.1523/JNEUROSCI.0876-06.2006&amp;lt;/ref&amp;gt;. The detection of the pheromone, was shown to be mediated by pheromone-induced conformational shifts in the PBP, &amp;lt;scene name=&#039;61/614066/Lush/1&#039;&amp;gt;LUSH&amp;lt;/scene&amp;gt;. In fact, the trigering of the neuron was possible in the absence of the pheromone itself&amp;lt;ref&amp;gt;doi: m10.1016/j.cell.2008.04.046&amp;lt;/ref&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;CSP&#039;&#039;&#039;&lt;br /&gt;
&#039;&#039;Mamestra brassicae&#039;&#039; &amp;lt;scene name=&#039;61/614066/Mamestra_brassicae_csp/1&#039;&amp;gt;chemosensory protein&amp;lt;/scene&amp;gt; in complex with its ligand bromo-dodecanol. &lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;NPC2&#039;&#039;&#039;&lt;br /&gt;
Proposed soluble protein in Camponatus &#039;&#039;japonicus antennae&#039;&#039;, bears &amp;lt;scene name=&#039;61/614066/Resid_in_the_cavity_gate/1&#039;&amp;gt;6 consereved residues at the gate of the cavity&amp;lt;/scene&amp;gt;&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== See also == &lt;br /&gt;
*[[Odorant_binding_protein_3D_structures]]&lt;br /&gt;
*For comprehensive explanation about quorum sensing please turn to Fuqua et al. (2001) &amp;lt;ref&amp;gt;DOI: 10.1146/annurev.genet.35.102401.090913 &amp;lt;/ref&amp;gt;.&lt;br /&gt;
*for more inforamtion about the protein-ligand interaction, you may go to [[Odorant binding protein]].&lt;br /&gt;
== References ==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Nurit Eliash</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Chemical_communication_in_arthropods&amp;diff=2368373</id>
		<title>Chemical communication in arthropods</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Chemical_communication_in_arthropods&amp;diff=2368373"/>
		<updated>2015-01-27T12:56:40Z</updated>

		<summary type="html">&lt;p&gt;Nurit Eliash: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;[[Image:Sensilla.png|thumb|upright=1.5|Figure 1: Vertebrate (a), and insect (b) sensilla. Figure 1 from Kaupp (2010), used with permission of Prof. U. Benjamin Kaupp.]] &lt;br /&gt;
[[Image:Signal trunsdution - Sanchez 2009.jpg|thumb|right|upright=2|Figure 2.(a) Schematic representation of the general structure of an insect olfactory hair; (b) The first molecular steps of the insect chemosensory signaling transduction pathway. Figure 1 from Sánchez-Gracia et al.(2009)&amp;lt;ref&amp;gt;doi: 10.1038/hdy.2009.55&amp;lt;/ref&amp;gt;, used with permission of Prof. Sa´nchez-Gracia.]]&lt;br /&gt;
 [[Image:Vieira and Rozas 2011 fig7.JPG|thumb|upright=1.5|Figure 3. The evolution of the Chemosensory System. Blue boxes represent the aquatic lifestyle. Right: Presence or absence of the chemosensory gene families in extant species. Branch lengths are not to scale. Figure 7 from Vieira and Rozas (2011), used with permission of Prof Julio Rozas &amp;lt;ref name=&amp;quot;Vieira and Rozas&amp;quot;&amp;gt;DOI: 10.1093/gbe/evr033&amp;lt;/ref&amp;gt;]] &lt;br /&gt;
&lt;br /&gt;
==The molecular basis of chemical communication==&lt;br /&gt;
The sense of smell, [http://en.wikipedia.org/wiki/Olfaction Olfaction] is a primary sense in nature. It plays a significant role in behaviors which are crucial for the organism survival: food searching, host and mating selection, and avoiding predators and pathogens &amp;lt;ref name=&amp;quot;kaupp&amp;quot;&amp;gt;DOI: 10.1038/nrn2789&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
In both [http://en.wikipedia.org/wiki/Arthropod arthropods] and [http://en.wikipedia.org/wiki/Vertebrate vertebrates] the detection of volatiles is completed by a complicated process which is mediated by soluble as well as transmembrane proteins &amp;lt;ref name=&amp;quot;pelosi&amp;quot;&amp;gt;DOI: 10.3389/fphys.2014.00320&amp;lt;/ref&amp;gt;.&lt;br /&gt;
It should be mentioned that the detection of [http://en.wikipedia.org/wiki/Pheromone pheromones] is also vital to microorganisms, as it regulates gene expression in what is termed [http://en.wikipedia.org/wiki/Quorum_sensing “quorum sensing”].  &lt;br /&gt;
In arthropods, most of what is known on chemosensory communication is based on insects&#039; research. The process begins when a volatile (mostly a small [http://en.wikipedia.org/wiki/Hydrophobe hydrophobic] molecule) enters the chemosensilla lymph of an insect, or the mucus of a vertebrate in the nasal cavity ([[fig 1]]). Both mediums are abundant in soluble proteins which binds to the hydrophobic molecules, solubilizes and carries it to the [http://en.wikipedia.org/wiki/Chemoreceptor chemoreceptors] on the dendritic membrane of the olfactory receptor neuron &amp;lt;ref name=&amp;quot;kaupp&amp;quot; /&amp;gt;&amp;lt;ref&amp;gt;Vogt RG (2005) Molecular basis of pheromone detection in insects. Comprehensive Insect Physiology, Biochemistry, Pharmacology and Molecular Biology, eds Gilbert LI, Iatro K, Gills S (Elsevier, London), Vol 3, pp 753–804.&amp;lt;/ref&amp;gt;.The chemical signal is there by translated into an electrical signal which can cause an immediate response, or further elaborate with other signals in the insect&#039;s mushroom bodies or vertebrate&#039;s brain ([[fig 2]])&amp;lt;ref&amp;gt;doi: 10.3389/fncel.2012.00048&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;doi: 10.1146/annurev-ento-120811-153635&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== What is the differences and similarities between Arthropods and Vertebrates? ==&lt;br /&gt;
 &lt;br /&gt;
Though functionally similar, receptors as well as soluble proteins are structurally and genetically unrelated in insects and vertebrates (see [[fig 3]] for the putative evolution of priteins involved in chemosensory system).   &lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;Receptors&#039;&#039;&#039; &lt;br /&gt;
Most of the vertebrates&#039; chemosensory receptors are metabotropic and belong to the [[G protein-coupled receptors]]. Once the volatile binds to the receptor it initiates intracellular signal transduction &amp;lt;ref&amp;gt;doi: 10.1016/S0167-4838(00)00167-9&amp;lt;/ref&amp;gt;. On the other hand, arthropods&#039; and insects&#039; chemoreceptors are composed of two subunits: [http://en.wikipedia.org/wiki/Olfactory_receptor Receptor] and [http://en.wikipedia.org/wiki/Co-receptor Co-receptor] that upon interaction with the volatile or the complex of volatile-soluble protein, are activated and serve as an [http://en.wikipedia.org/wiki/Ion_channel ion channel]. The opening of the ion channel changes the [http://en.wikipedia.org/wiki/Membrane_potential membrane potential], and starts the inter-cellular signal transduction&amp;lt;ref&amp;gt;Vogt RG (2005) Molecular basis of pheromone detection in insects. Comprehensive Insect Physiology, Biochemistry, Pharmacology and Molecular Biology, eds Gilbert LI, Iatro K, Gills S (Elsevier, London), Vol 3, pp 753–804.&amp;lt;/ref&amp;gt;.[[Image:Chemoreceptors-insects.jpg|thumb|center|upright=2.5|Figure 4: Types of insect receptors. Figure 1 from Kaupp (2010), used with permission of Prof. U. Benjamin Kaupp.]]    &lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;Soluble proteins&#039;&#039;&#039;&lt;br /&gt;
These proteins which are concentrated in the sensillar lymph, solubilize and carry the volatile molecules to the receptor. &lt;br /&gt;
There are two main known types of soluble proteins that are involved in arthropods&#039; chemical communication: &#039;&#039;&#039;[http://proteopedia.org/w/Odorant_binding_protein Odorant binding proteins –OBPs]&#039;&#039;&#039;,&#039;&#039;&#039;[http://proteopedia.org/wiki/index.php/Chemosensory_protein Chemosensory protein-CSP]&#039;&#039;&#039; ([[fig 5]]). Though bearing the same name and participating in the same function, OBP of vertebrates and arthropods are two distinct families with completely different structure and origin&amp;lt;ref name=&amp;quot;pelosi&amp;quot; /&amp;gt;. Arthropods&#039; OBP are composed of alpha helices, while vertebrates&#039; OBP belong to the [http://en.wikipedia.org/wiki/Lipocalin Lipocalins] super family and have a beta-barrel structure (for structure comparison, see [[table 1]] and [[fig 5]]). Recently, another family of protein has been suggested to play a role in ant chemical communication, &#039;&#039;&#039;[https://www.wikigenes.org/e/gene/e/10577.html Niemann-Pick type C2 protein-NPC2]&#039;&#039;&#039; &amp;lt;ref&amp;gt;DOI: 10.1073/pnas.1323928111&amp;lt;/ref&amp;gt;. &lt;br /&gt;
[[Image:Fig 3 soluble proteins.png|thumb|center|upright=3|Figure 5. (a) An example for vertebrate&#039;s OBP-a pig OBP, PDB:[[1e06]]; (b) An example for insect&#039;s OBP- &#039;&#039;Bombyx mori&#039;&#039; PBP, PDB:[[1dqe]]; (c) An example for insect&#039;s CSP-&#039;&#039;Mamestra brassicae&#039;&#039; CSP2 PDB:[[1n8u]]]]&lt;br /&gt;
[[Image:Soluble proteins table.png|thumb|center|upright=2|Table 1. Summation of the main structure properties of soluble proteins types]]&lt;br /&gt;
&lt;br /&gt;
==Types of Soluble proteins in arthropods== &lt;br /&gt;
&amp;lt;StructureSection load=&#039;1OOH&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;&#039;&#039;Mamestra brassicae&#039;&#039; CSP2 PDB:[[1n8u]]&#039; scene=&#039;&#039;&amp;gt;&lt;br /&gt;
*&#039;&#039;&#039;OBP&#039;&#039;&#039;&lt;br /&gt;
In the fly &#039;&#039;Drosophila melanogaster&#039;&#039; detection of the pheromone, 11-cis vaccenyl acetate, was shown to be mediated by pheromone-induced conformational shifts in the PBP, &amp;lt;scene name=&#039;61/614066/Lush/1&#039;&amp;gt;LUSH&amp;lt;/scene&amp;gt;. In fact, the trigering of the neuron was possible in the absence of the pheromone itself&amp;lt;ref&amp;gt;doi: m10.1016/j.cell.2008.04.046&amp;lt;/ref&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;CSP&#039;&#039;&#039;&lt;br /&gt;
&#039;&#039;Mamestra brassicae&#039;&#039; &amp;lt;scene name=&#039;61/614066/Mamestra_brassicae_csp/1&#039;&amp;gt;chemosensory protein&amp;lt;/scene&amp;gt; in complex with its ligand bromo-dodecanol. &lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;NPC2&#039;&#039;&#039;&lt;br /&gt;
Proposed soluble protein in Camponatus &#039;&#039;japonicus antennae&#039;&#039;, bears &amp;lt;scene name=&#039;61/614066/Resid_in_the_cavity_gate/1&#039;&amp;gt;6 consereved residues at the gate of the cavity&amp;lt;/scene&amp;gt;&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== See also == &lt;br /&gt;
*[[Odorant_binding_protein_3D_structures]]&lt;br /&gt;
*For comprehensive explanation about quorum sensing please turn to Fuqua et al. (2001) &amp;lt;ref&amp;gt;DOI: 10.1146/annurev.genet.35.102401.090913 &amp;lt;/ref&amp;gt;.&lt;br /&gt;
*for more inforamtion about the protein-ligand interaction, you may go to [[Odorant binding protein]].&lt;br /&gt;
== References ==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Nurit Eliash</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Chemical_communication_in_arthropods&amp;diff=2368372</id>
		<title>Chemical communication in arthropods</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Chemical_communication_in_arthropods&amp;diff=2368372"/>
		<updated>2015-01-27T12:48:55Z</updated>

		<summary type="html">&lt;p&gt;Nurit Eliash: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;[[Image:Sensilla.png|thumb|upright=1.5|Figure 1: Vertebrate (a), and insect (b) sensilla. Figure 1 from Kaupp (2010), used with permission of Prof. U. Benjamin Kaupp.]] &lt;br /&gt;
[[Image:Signal trunsdution - Sanchez 2009.jpg|thumb|right|upright=2|Figure 2.(a) Schematic representation of the general structure of an insect olfactory hair; (b) The first molecular steps of the insect chemosensory signaling transduction pathway. Figure 1 from Sánchez-Gracia et al.(2009)&amp;lt;ref&amp;gt;doi: 10.1038/hdy.2009.55&amp;lt;/ref&amp;gt;, used with permission of Prof. Sa´nchez-Gracia.]]&lt;br /&gt;
 [[Image:Vieira and Rozas 2011 fig7.JPG|thumb|upright=1.5|Figure 3. The evolution of the Chemosensory System. Blue boxes represent the aquatic lifestyle. Right: Presence or absence of the chemosensory gene families in extant species. Branch lengths are not to scale. Figure 7 from Vieira and Rozas (2011), used with permission of Prof Julio Rozas &amp;lt;ref name=&amp;quot;Vieira and Rozas&amp;quot;&amp;gt;DOI: 10.1093/gbe/evr033&amp;lt;/ref&amp;gt;]] &lt;br /&gt;
&lt;br /&gt;
==The molecular basis of chemical communication==&lt;br /&gt;
The sense of smell, [http://en.wikipedia.org/wiki/Olfaction Olfaction] is a primary sense in nature. It plays a significant role in behaviors which are crucial for the organism survival: food searching, host and mating selection, and avoiding predators and pathogens &amp;lt;ref name=&amp;quot;kaupp&amp;quot;&amp;gt;DOI: 10.1038/nrn2789&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
In both [http://en.wikipedia.org/wiki/Arthropod arthropods] and [http://en.wikipedia.org/wiki/Vertebrate vertebrates] the detection of volatiles is completed by a complicated process which is mediated by soluble as well as transmembrane proteins &amp;lt;ref name=&amp;quot;pelosi&amp;quot;&amp;gt;DOI: 10.3389/fphys.2014.00320&amp;lt;/ref&amp;gt;.&lt;br /&gt;
It should be mentioned that the detection of [http://en.wikipedia.org/wiki/Pheromone pheromones] is also vital to microorganisms, as it regulates gene expression in what is termed [http://en.wikipedia.org/wiki/Quorum_sensing “quorum sensing”].  &lt;br /&gt;
In arthropods, most of what is known on chemosensory communication is based on insects&#039; research. The process begins when a volatile (mostly a small [http://en.wikipedia.org/wiki/Hydrophobe hydrophobic] molecule) enters the chemosensilla lymph of an insect, or the mucus of a vertebrate in the nasal cavity ([[fig 1]]). Both mediums are abundant in soluble proteins which binds to the hydrophobic molecules, solubilizes and carries it to the [http://en.wikipedia.org/wiki/Chemoreceptor chemoreceptors] on the dendritic membrane of the olfactory receptor neuron &amp;lt;ref name=&amp;quot;kaupp&amp;quot; /&amp;gt;&amp;lt;ref&amp;gt;Vogt RG (2005) Molecular basis of pheromone detection in insects. Comprehensive Insect Physiology, Biochemistry, Pharmacology and Molecular Biology, eds Gilbert LI, Iatro K, Gills S (Elsevier, London), Vol 3, pp 753–804.&amp;lt;/ref&amp;gt;.The chemical signal is there by translated into an electrical signal which can cause an immediate response, or further elaborate with other signals in the insect&#039;s mushroom bodies or vertebrate&#039;s brain ([[fig 2]])&amp;lt;ref&amp;gt;doi: 10.3389/fncel.2012.00048&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;doi: 10.1146/annurev-ento-120811-153635&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== What is the differences and similarities between Arthropods and Vertebrates? ==&lt;br /&gt;
 &lt;br /&gt;
Though functionally similar, receptors as well as soluble proteins are structurally and genetically unrelated in insects and vertebrates (see [[fig 3]] for the putative evolution of priteins involved in chemosensory system).   &lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;Receptors&#039;&#039;&#039; &lt;br /&gt;
Most of the vertebrates&#039; chemosensory receptors are metabotropic and belong to the [[G protein-coupled receptors]]. Once the volatile binds to the receptor it initiates intracellular signal transduction &amp;lt;ref&amp;gt;doi: 10.1016/S0167-4838(00)00167-9&amp;lt;/ref&amp;gt;. On the other hand, arthropods&#039; and insects&#039; chemoreceptors are composed of two subunits: [http://en.wikipedia.org/wiki/Olfactory_receptor Receptor] and [http://en.wikipedia.org/wiki/Co-receptor Co-receptor] that upon interaction with the volatile or the complex of volatile-soluble protein, are activated and serve as an [http://en.wikipedia.org/wiki/Ion_channel ion channel]. The opening of the ion channel changes the [http://en.wikipedia.org/wiki/Membrane_potential membrane potential], and starts the inter-cellular signal transduction&amp;lt;ref&amp;gt;Vogt RG (2005) Molecular basis of pheromone detection in insects. Comprehensive Insect Physiology, Biochemistry, Pharmacology and Molecular Biology, eds Gilbert LI, Iatro K, Gills S (Elsevier, London), Vol 3, pp 753–804.&amp;lt;/ref&amp;gt;.[[Image:Chemoreceptors-insects.jpg|thumb|center|upright=2.5|Figure 4: Types of insect receptors. Figure 1 from Kaupp (2010), used with permission of Prof. U. Benjamin Kaupp.]]    &lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;Soluble proteins&#039;&#039;&#039;&lt;br /&gt;
These proteins which are concentrated in the sensillar lymph, solubilize and carry the volatile molecules to the receptor. &lt;br /&gt;
There are two main known types of soluble proteins that are involved in arthropods&#039; chemical communication: &#039;&#039;&#039;[http://proteopedia.org/w/Odorant_binding_protein Odorant binding proteins –OBPs]&#039;&#039;&#039;,&#039;&#039;&#039;[http://proteopedia.org/wiki/index.php/Chemosensory_protein Chemosensory protein-CSP]&#039;&#039;&#039; ([[fig 5]]). Though bearing the same name and participating in the same function, OBP of vertebrates and arthropods are two distinct families with completely different structure and origin&amp;lt;ref name=&amp;quot;pelosi&amp;quot; /&amp;gt;. Arthropods&#039; OBP are composed of alpha helices, while vertebrates&#039; OBP belong to the [http://en.wikipedia.org/wiki/Lipocalin Lipocalins] super family and have a beta-barrel structure (for structure comparison, see [[table 1]] and [[fig 5]]). Recently, another family of protein has been suggested to play a role in ant chemical communication, &#039;&#039;&#039;[https://www.wikigenes.org/e/gene/e/10577.html Niemann-Pick type C2 protein-NPC2]&#039;&#039;&#039; &amp;lt;ref&amp;gt;DOI: 10.1073/pnas.1323928111&amp;lt;/ref&amp;gt;. &lt;br /&gt;
[[Image:Fig 3 soluble proteins.png|thumb|center|upright=3|Figure 5. (a) An example for vertebrate&#039;s OBP-a pig OBP, PDB:[[1e06]]; (b) An example for insect&#039;s OBP- &#039;&#039;Bombyx mori&#039;&#039; PBP, PDB:[[1dqe]]; (c) An example for insect&#039;s CSP-&#039;&#039;Mamestra brassicae&#039;&#039; CSP2 PDB:[[1n8u]]]]&lt;br /&gt;
[[Image:Soluble proteins table.png|thumb|center|upright=2|Table 1. Summation of the main structure properties of soluble proteins types]]&lt;br /&gt;
&lt;br /&gt;
==Types of Soluble proteins in arthropods== &lt;br /&gt;
&amp;lt;StructureSection load=&#039;1n8u&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;&#039;&#039;Mamestra brassicae&#039;&#039; CSP2 PDB:[[1n8u]]&#039; scene=&#039;&#039;&amp;gt;&lt;br /&gt;
*&#039;&#039;&#039;OBP&#039;&#039;&#039;&lt;br /&gt;
&#039;&#039;Drosophila melanogaster&#039;&#039; &amp;lt;scene name=&#039;61/614066/Lush/1&#039;&amp;gt;LUSH&amp;lt;/scene&amp;gt;&amp;lt;ref&amp;gt;doi: m10.1016/j.cell.2008.04.046&amp;lt;/ref&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;CSP&#039;&#039;&#039;&lt;br /&gt;
&#039;&#039;Mamestra brassicae&#039;&#039; &amp;lt;scene name=&#039;61/614066/Mamestra_brassicae_csp/1&#039;&amp;gt;chemosensory protein&amp;lt;/scene&amp;gt; in complex with its ligand bromo-dodecanol. &lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;NPC2&#039;&#039;&#039;&lt;br /&gt;
Proposed soluble protein in Camponatus &#039;&#039;japonicus antennae&#039;&#039;, bears &amp;lt;scene name=&#039;61/614066/Resid_in_the_cavity_gate/1&#039;&amp;gt;6 consereved residues at the gate of the cavity&amp;lt;/scene&amp;gt;&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== See also == &lt;br /&gt;
*[[Odorant_binding_protein_3D_structures]]&lt;br /&gt;
*For comprehensive explanation about quorum sensing please turn to Fuqua et al. (2001) &amp;lt;ref&amp;gt;DOI: 10.1146/annurev.genet.35.102401.090913 &amp;lt;/ref&amp;gt;.&lt;br /&gt;
*for more inforamtion about the protein-ligand interaction, you may go to [[Odorant binding protein]].&lt;br /&gt;
== References ==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Nurit Eliash</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Chemical_communication_in_arthropods&amp;diff=2368371</id>
		<title>Chemical communication in arthropods</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Chemical_communication_in_arthropods&amp;diff=2368371"/>
		<updated>2015-01-27T12:39:49Z</updated>

		<summary type="html">&lt;p&gt;Nurit Eliash: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;[[Image:Sensilla.png|thumb|upright=1.5|Figure 1: Vertebrate (a), and insect (b) sensilla. Figure 1 from Kaupp (2010), used with permission of Prof. U. Benjamin Kaupp.]] &lt;br /&gt;
[[Image:Signal trunsdution - Sanchez 2009.jpg|thumb|right|upright=2|Figure 2.(a) Schematic representation of the general structure of an insect olfactory hair; (b) The first molecular steps of the insect chemosensory signaling transduction pathway. Figure 1 from Sánchez-Gracia et al.(2009)&amp;lt;ref&amp;gt;doi: 10.1038/hdy.2009.55&amp;lt;/ref&amp;gt;, used with permission of Prof. Sa´nchez-Gracia.]]&lt;br /&gt;
 [[Image:Vieira and Rozas 2011 fig7.JPG|thumb|upright=1.5|Figure 3. The evolution of the Chemosensory System. Blue boxes represent the aquatic lifestyle. Right: Presence or absence of the chemosensory gene families in extant species. Branch lengths are not to scale. Figure 7 from Vieira and Rozas (2011), used with permission of Prof Julio Rozas &amp;lt;ref name=&amp;quot;Vieira and Rozas&amp;quot;&amp;gt;DOI: 10.1093/gbe/evr033&amp;lt;/ref&amp;gt;]] &lt;br /&gt;
&lt;br /&gt;
==The molecular basis of chemical communication==&lt;br /&gt;
The sense of smell, [http://en.wikipedia.org/wiki/Olfaction Olfaction] is a primary sense in nature. It plays a significant role in behaviors which are crucial for the organism survival: food searching, host and mating selection, and avoiding predators and pathogens &amp;lt;ref name=&amp;quot;kaupp&amp;quot;&amp;gt;DOI: 10.1038/nrn2789&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
In both [http://en.wikipedia.org/wiki/Arthropod arthropods] and [http://en.wikipedia.org/wiki/Vertebrate vertebrates] the detection of volatiles is completed by a complicated process which is mediated by soluble as well as transmembrane proteins &amp;lt;ref name=&amp;quot;pelosi&amp;quot;&amp;gt;DOI: 10.3389/fphys.2014.00320&amp;lt;/ref&amp;gt;.&lt;br /&gt;
It should be mentioned that the detection of [http://en.wikipedia.org/wiki/Pheromone pheromones] is also vital to microorganisms, as it regulates gene expression in what is termed [http://en.wikipedia.org/wiki/Quorum_sensing “quorum sensing”].  &lt;br /&gt;
In arthropods, most of what is known on chemosensory communication is based on insects&#039; research. The process begins when a volatile (mostly a small [http://en.wikipedia.org/wiki/Hydrophobe hydrophobic] molecule) enters the chemosensilla lymph of an insect, or the mucus of a vertebrate in the nasal cavity (fig 1). Both mediums are abundant in soluble proteins which binds to the hydrophobic molecules, solubilizes and carries it to the [http://en.wikipedia.org/wiki/Chemoreceptor chemoreceptors] on the dendritic membrane of the olfactory receptor neuron &amp;lt;ref name=&amp;quot;kaupp&amp;quot; /&amp;gt;&amp;lt;ref&amp;gt;Vogt RG (2005) Molecular basis of pheromone detection in insects. Comprehensive Insect Physiology, Biochemistry, Pharmacology and Molecular Biology, eds Gilbert LI, Iatro K, Gills S (Elsevier, London), Vol 3, pp 753–804.&amp;lt;/ref&amp;gt;.The chemical signal is there by translated into an electrical signal which can cause an immediate response, or further elaborate with other signals in the insect&#039;s mushroom bodies or vertebrate&#039;s brain (fig 2)&amp;lt;ref&amp;gt;doi: 10.3389/fncel.2012.00048&amp;lt;/ref&amp;gt;&amp;lt;ref&amp;gt;doi: 10.1146/annurev-ento-120811-153635&amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== What is the differences and similarities between Arthropods and Vertebrates? ==&lt;br /&gt;
 &lt;br /&gt;
Though functionally similar, receptors as well as soluble proteins are structurally and genetically unrelated in insects and vertebrates (see [[figure 3]] for the putative evolution of priteins involved in chemosensory system).   &lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;Receptors&#039;&#039;&#039; &lt;br /&gt;
Most of the vertebrates&#039; chemosensory receptors are metabotropic and belong to the [[G protein-coupled receptors]]. Once the volatile binds to the receptor it initiates intracellular signal transduction &amp;lt;ref&amp;gt;doi: 10.1016/S0167-4838(00)00167-9&amp;lt;/ref&amp;gt;. On the other hand, arthropods&#039; and insects&#039; chemoreceptors are composed of two subunits: [http://en.wikipedia.org/wiki/Olfactory_receptor Receptor] and [http://en.wikipedia.org/wiki/Co-receptor Co-receptor] that upon interaction with the volatile or the complex of volatile-soluble protein, are activated and serve as an [http://en.wikipedia.org/wiki/Ion_channel ion channel]. The opening of the ion channel changes the [http://en.wikipedia.org/wiki/Membrane_potential membrane potential], and starts the inter-cellular signal transduction&amp;lt;ref&amp;gt;Vogt RG (2005) Molecular basis of pheromone detection in insects. Comprehensive Insect Physiology, Biochemistry, Pharmacology and Molecular Biology, eds Gilbert LI, Iatro K, Gills S (Elsevier, London), Vol 3, pp 753–804.&amp;lt;/ref&amp;gt;.[[Image:Chemoreceptors-insects.jpg|thumb|center|upright=2.5|Figure 2: Types of insect receptors. Figure 1 from Kaupp (2010), used with permission of Prof. U. Benjamin Kaupp.]]    &lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;Soluble proteins&#039;&#039;&#039;&lt;br /&gt;
These proteins which are concentrated in the sensillar lymph, solubilize and carry the volatile molecules to the receptor. &lt;br /&gt;
There are two main known types of soluble proteins that are involved in arthropods&#039; chemical communication: &#039;&#039;&#039;[http://proteopedia.org/w/Odorant_binding_protein Odorant binding proteins –OBPs]&#039;&#039;&#039;,&#039;&#039;&#039;[http://proteopedia.org/wiki/index.php/Chemosensory_protein Chemosensory protein-CSP]&#039;&#039;&#039; (fig 3). Though bearing the same name and participating in the same function, OBP of vertebrates and arthropods are two distinct families with completely different structure and origin&amp;lt;ref name=&amp;quot;pelosi&amp;quot; /&amp;gt;. Arthropods&#039; OBP are composed of alpha helices, while vertebrates&#039; OBP belong to the [http://en.wikipedia.org/wiki/Lipocalin Lipocalins] super family and have a beta-barrel structure (for structure comparison, see [[table 1]]). Recently, another family of protein has been suggested to play a role in ant chemical communication, &#039;&#039;&#039;[https://www.wikigenes.org/e/gene/e/10577.html Niemann-Pick type C2 protein-NPC2]&#039;&#039;&#039; &amp;lt;ref&amp;gt;DOI: 10.1073/pnas.1323928111&amp;lt;/ref&amp;gt;. &lt;br /&gt;
[[Image:Fig 3 soluble proteins.png|thumb|center|upright=3|Figure 3. (a) An example for vertebrate&#039;s OBP-a pig OBP, PDB:[[1e06]]; (b) An example for insect&#039;s OBP- &#039;&#039;Bombyx mori&#039;&#039; PBP, PDB:[[1dqe]]; (c) An example for insect&#039;s CSP-&#039;&#039;Mamestra brassicae&#039;&#039; CSP2 PDB:[[1n8u]]]]&lt;br /&gt;
[[Image:Soluble proteins table.png|thumb|center|upright=2|Table 1. Summation of the main structure properties of soluble proteins types]]&lt;br /&gt;
&lt;br /&gt;
==Types of Soluble proteins in arthropods== &lt;br /&gt;
&amp;lt;StructureSection load=&#039;1n8u&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;&#039;&#039;Mamestra brassicae&#039;&#039; CSP2 PDB:[[1n8u]]&#039; scene=&#039;&#039;&amp;gt;&lt;br /&gt;
*&#039;&#039;&#039;OBP&#039;&#039;&#039;&lt;br /&gt;
&#039;&#039;Drosophila melanogaster&#039;&#039; &amp;lt;scene name=&#039;61/614066/Lush/1&#039;&amp;gt;LUSH&amp;lt;/scene&amp;gt;&amp;lt;ref&amp;gt;doi: m10.1016/j.cell.2008.04.046&amp;lt;/ref&amp;gt;. &lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;CSP&#039;&#039;&#039;&lt;br /&gt;
&#039;&#039;Mamestra brassicae&#039;&#039; &amp;lt;scene name=&#039;61/614066/Mamestra_brassicae_csp/1&#039;&amp;gt;chemosensory protein&amp;lt;/scene&amp;gt; in complex with its ligand bromo-dodecanol. &lt;br /&gt;
&lt;br /&gt;
*&#039;&#039;&#039;NPC2&#039;&#039;&#039;&lt;br /&gt;
Proposed soluble protein in Camponatus &#039;&#039;japonicus antennae&#039;&#039;, bears &amp;lt;scene name=&#039;61/614066/Resid_in_the_cavity_gate/1&#039;&amp;gt;6 consereved residues at the gate of the cavity&amp;lt;/scene&amp;gt;&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== See also == &lt;br /&gt;
*[[Odorant_binding_protein_3D_structures]]&lt;br /&gt;
*For comprehensive explanation about quorum sensing please turn to Fuqua et al. (2001) &amp;lt;ref&amp;gt;DOI: 10.1146/annurev.genet.35.102401.090913 &amp;lt;/ref&amp;gt;.&lt;br /&gt;
*for more inforamtion about the protein-ligand interaction, you may go to [[Odorant binding protein]].&lt;br /&gt;
== References ==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Nurit Eliash</name></author>
	</entry>
</feed>