https://proteopedia.org/api.php?action=feedcontributions&feedformat=atom&user=Openfox 2026-10-02T17:09:35Z User contributions MediaWiki 1.43.8 https://proteopedia.org/index.php?title=Histone_deacetylase_3D_structures&diff=4433740 2026-03-29T15:43:18Z

<p>Openfox: Normalize &lt;br/&gt; usage in #tree blocks</p> <hr /> <div>== 3D Structures of histone deacetylase ==<br /> <br /> Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}<br /> {{#tree:id=OrganizedByTopic|openlevels=0|<br /> *'''HDAC class I'''<br /> *HDAC1<br /> **[[4bkx]] – hHDAC1 + MTA1 – human<br /> **[[3hgq]], [[3hgt]] – hHDAC1 subunit 3<br /> **[[5icn]] – hHDAC1 + MTA1 + peptide<br /> **[[7ao8]], [[7ao9]] – hHDAC1 + MTA1 + MBD2 – Cryo EM<br /> **[[7aoa]] – hHDAC1 + MTA1 + MBD2 + RBBP4 – Cryo EM<br /> **[[6z2j]], [[6z2k]] – hHDAC1 + DNTTIP1 + Midac deacetylase – Cryo EM<br /> **[[8voj]], [[8vpq]], [[8vrt]] – hHDAC1 + CoRest + Lsd1 – Cryo EM<br /> **[[5j8j]] – yHDAC1 residues 457-698 – yeast<br /> **[[6z6f]], [[6z6h]], [[6z6o]], [[6z6p]] – yHDAC1 – Cryo EM<br /> *HDAC2<br /> **[[3max]] – hHDAC2 + amide derivative <br /> **[[4lxz]], [[6g3o]] – hHDAC2 core domain + SAHA<br /> **[[8bpa]], [[8bpb]], [[8c60]] – hHDAC2 + SIN3B + PF1 – Cryo EM<br /> **[[8bpc]] – hHDAC2 + SIN3B + PF1 + SAHA – Cryo EM<br /> **[[8bpa]], [[8bpb]], [[8c60]] – hHDAC2 + SIN3B + PF1 – Cryo EM<br /> **[[8bpc]] – hHDAC2 + SIN3B + PF1 + SAHA – Cryo EM<br /> **[[4ly1]], [[5iwg]], [[5ix0]], [[6wbw]], [[6wbz]], [[6xdm]], [[6xeb]], [[6xec]], [[7js8]], [[7kbh]], [[7kbg]], [[7ltg]], [[7ltk]], [[7ltl]], [[7mot]], [[7mox]], [[7moy]], [[7zzo]], [[7zzp]], [[7zzr]], [[7zzs]], [[7zzt]], [[7zzv]], [[7zzw]], [[8a0b]] – hHDAC2 core domain + inhibitor<br /> **[[6whn]], [[6who]], [[6whq]], [[6whz]], [[6wi3]], [[7mos]], [[7moz]] – hHDAC2 core domain + peptide macrocycle<br /> **[[9dtq]] – hHDAC2 + CoRest + Lsd1 – Cryo EM<br /> **[[9ggm]] – hHDAC2 + KBTBD4 – Cryo EM<br /> **[[9ggl]], [[9ggn]], [[9i2c]] – hHDAC2 + KBTBD4 + molecular glue – Cryo EM<br /> **[[7vrr]] – AtHDAC2a residues 1-95 – ''Arabidopsis thaliana''<br /> **[[7vmf]], [[7vmh]] – AtHDAC2d residues 1-95 <br /> **[[7vmi]] – AtHDAC2c residues 1-95 <br /> *HDAC3<br /> **[[4a69]] – hHDAC3 + nuclear receptor corepressor 2 + inositol tetraphosphate<br /> *HDAC8<br /> **[[3ew8]], [[3ezp]], [[3ezt]], [[3f06]] – hHDAC8 (mutant)<br /> **[[3sff]], [[3sfh]] – hHDAC8 + inhibitor<br /> **[[4qa1]], [[4qa2]], [[4qa3]], [[4qa4]] - hHDAC8 (mutant) + inhibitor<br /> **[[1t64]], [[3f0r]], [[5ths]] – hHDAC8 + trichostatin A <br /> **[[5d1b]], [[5dc5]], [[5tht]], [[5thu]], [[5thv]], [[7jvw]] - hHDAC8 (mutant) + amide derivative<br /> **[[1t67]], [[1vkg]], [[1w22]], [[3f07]], [[6oda]], [[6odb]], [[6odc]] - hHDAC8 + amide derivative<br /> **[[1t69]] - hHDAC8 + SAHA<br /> **[[4qa0]], [[7jvu]] - hHDAC8 (mutant) + SAHA<br /> **[[5fcw]], [[5fue]] - hHDAC8 + hydroxamate<br /> **[[5vi6]] - hHDAC8 + trapoxin A<br /> **[[2v5w]] – hHDAC8 + tripeptide substrate<br /> **[[3ewf]], [[4qa5]], [[4qa6]], [[4qa7]], [[5d1c]], [[5d1d]], [[5dc6]], [[5dc7]], [[5dc8]], [[7jvv]], [[7p3s]] - hHDAC8 (mutant) + tetrapeptide substrate<br /> **[[3rqd]] - hHDAC8 + largazole<br /> **[[4rn0]], [[4rn1]], [[4rn2]] - hHDAC8 (mutant) + largazole analog<br /> **[[5bwz]] - hHDAC8 (mutant) + droxinostat<br /> **[[3mz3]] - hHDAC8 (Co) + amide derivative<br /> **[[3mz7]] - hHDAC8 (Co) (mutant) + amide derivative<br /> **[[3mz4]] - hHDAC8 (Mn) (mutant) + amide derivative<br /> **[[3mz6]] - hHDAC8 (Fe) (mutant) + amide derivative<br /> **[[2v5x]] - hHDAC8 (mutant) + octanediamide derivative<br /> **[[4bz5]] – SmHDAC8 – ''Schistosoma mansoni''<br /> **[[4bz7]], [[4bz8]], [[4bz9]], [[4cqf]], [[6hqy]], [[6hrq]], [[6hsh]], [[6hsz]], [[6ht8]], [[6htg]], [[6hth]], [[6hti]], [[6htt]], [[6htz]], [[6hu0]], [[6hu1]], [[6hu2]], [[6hu3]], [[6tld]], [[7p2s]], [[7p2t]], [[7p2u]], [[7p2v]], [[7p3s]], [[7poz]] – SmHDAC8 + inhibitor<br /> **[[6hsf]], [[6hsg]], [[6hsk]] – SmHDAC8 (mutant) + inhibitor<br /> **[[4bz6]], [[6fu1]], [[6gx3]], [[6gxa]], [[6gxu]], [[6gxw]] – SmHDAC8 + SAHA &lt;br/&gt;derivative<br /> *HDAC Rpd3<br /> **[[8kc7]], [[8w9c]] – yRpd3 + SIN3 + RCO1 + EAF3 – Cryo EM<br /> **[[8hxx]] – yRpd3 + SIN3 + RCO1 + EAF3 + histone H3 – Cryo EM<br /> **[[8hxy]], [[8hy0]], [[8ihn]], [[8iht]], [[8jho]], [[8kd2]], [[8kd3]], [[8kd4]], [[8kd5]], [[8kd6]], [[8kd7]], [[8tof]], [[8w9d]], [[8w9e]], [[8w9f]] – yRpd3 + SIN3 + RCO1 + EAF3 + nucleosome – Cryo EM<br /> **[[8hpo]] – yRpd3 in SIN3/HDAC complex – Cryo EM<br /> **[[8ga8]] – yRpd3 in Rpd3L complex – Cryo EM<br /> *HDAC Clr<br /> **[[5ikk]] – fyClr3 – fission yeast<br /> **[[8ifg]] – fyClr6 + Prw1 + Pst2 + Eaf3 + Cph1 + Cph2 – Cryo EM<br /> **[[8i03]] – fyClr6 in SIN3L complex – Cryo EM<br /> *'''HDAC class IIA'''<br /> *HDAC4<br /> **[[2h8n]] – hHDAC4 N terminal <br /> **[[2o94]] - hHDAC4 N terminal (mutant)<br /> **[[2vqw]] - hHDAC4 catalytic domain (mutant)<br /> **[[2vqj]], [[2vqm]], [[4cbt]], [[5a2s]] – hHDAC4 catalytic domain + inhibitor<br /> **[[6fyz]] - hHDAC4 catalytic domain + SAHA derivative<br /> **[[2vqo]], [[2vqq]], [[2vqv]], [[4cby]] – hHDAC4 catalytic domain (mutant) + inhibitor<br /> **[[5zop]], [[5zoo]] - hHDAC4 catalytic domain (mutant) + SMRT corepressor<br /> *HDAC5<br /> **[[5uwi]] – hHDAC5 + RAN + RANBP1 + exportin<br /> *HDAC7<br /> **[[3c0y]] – hHDAC7 catalytic domain<br /> **[[3c0z]] - hHDAC7 catalytic domain + octanedioic acid hydroxyamide phenylamide<br /> **[[3c10]] - hHDAC7 catalytic domain + trichostatin A<br /> **[[3znr]], [[3zns]] - hHDAC7 catalytic domain + inhibitor<br /> **[[8wzl]] – AtHDAC7 8-383<br /> *HDAC9<br /> **[[1tqe]] – mHDAC9 + myocyte-specific enhancer factor + DNA – mouse<br /> *HDAC10 or polyamine deacetylase 10<br /> **[[5td7]], [[7kuv]] – zHDAC10 - zebrafish<br /> **[[6ufn]], [[6ufo]], [[6uhu]], [[6uhv]], [[6uii]], [[6uij]], [[6uil]], [[6uim]], [[6wbq]], [[6wdv]], [[6wdw]], [[6wdx]], [[6wdy]], [[7sgg]], [[7sgi]], [[7sgj]], [[7sgk]], [[7u3m]], [[7u59]], [[7u69]], [[7u6a]], [[7u6b]], [[9cbf]], [[9cbg]], [[9cbh]], [[9cbi]] – zHDAC10 + inhibitor<br /> **[[6vnq]], [[7kuq]], [[7kur]], [[7kus]], [[7kut]] – zHDAC10 (mutant) + inhibitor <br /> *HDAC<br /> **[[4a6q]], [[4a90]] - hHDAC subunit SAP18 <br /> **[[2hde]] – hHDAC subunit SAP18 (mutant) – NMR<br /> **[[4a8x]] - hHDAC subunit SAP18 + RNA-binding protein + hook-like<br /> **[[2kdp]] – hHDAC subunit SAP30 – NMR<br /> **[[2ld7]] – hHDAC subunit SAP30 +SIN3A PAH 3 domain – NMR<br /> **[[5ikk]] – HDAC CLR3 – fission yeast<br /> **[[7q1b]], [[7q1c]] – HDAC DAC2 + inhibitor – ''Trypanosoma cruzi''<br /> **[[9gky]] – VcHDAC + decanoic acid – ''Vibrio cholerae''<br /> **[[9gkv]] – VcHDAC + SAHA<br /> *'''HDAC class IIB'''<br /> *HDAC6; ; Domains – catalytic 2 288-646; CD1 – 40-440; CD2 440-798; zinc finger 1109-1213<br /> **[[3c5k]] – hHDAC6 zinc finger domain<br /> **[[3gv4]] - hHDAC6 zinc finger domain + ubiquitin peptide<br /> **[[3phd]] - hHDAC6 + polyubiquitin<br /> **[[5b8d]], [[5kh3]], [[5kh7]], [[5kh9]], [[6ce6]], [[6ce8]], [[6cea]], [[6cec]], [[6ced]], [[6cee]], [[6cef]], [[5wpb]], [[5wbn]], [[8g43]], [[8g44]], [[8g45]] – hHDAC6 zinc finger + inhibitor<br /> **[[7qno]] – zHDAC6 CD1+CD2 domain <br /> **[[5eem]] – zHDAC6 catalytic domain<br /> **[[5edu]], [[5eef]], [[5eek]], [[5een]], [[5ef7]], [[5ef8]], [[5efb]], [[5efg]], [[5efh]], [[5g0f]], [[5g0g]], [[5g0h]], [[5g0i]], [[5g0j]], [[5wgi]], [[5wgk]], [[5wgl]], [[5wgm]], [[6cgp]], [[6cw8]], [[6dvl]], [[6dvm]], [[6dvn]], [[6dvo]], [[6mr5]], [[6pye]], [[6pzo]], [[6pzr]], [[6pzs]], [[6pzu]], [[6q0z]], [[6r0k]], [[6tcy]], [[6thv]], [[6uo2]], [[6uo3]], [[6uo5]], [[6uo7]], [[6v79]], [[6v7a]], [[6vnr]], [[6zw1]], [[7jom]], [[7o2p]], [[7o2r]], [[7u8z]], [[7uk2]], [[8bjk]], [[8cj7]], [[8d98]], [[8d99]], [[8d9a]], [[8d9b]], [[8d9c]], [[8g1z]], [[8g20]], [[8gd4]], [[8qa7]], [[8tq0]], [[9cbj]], [[9cbk]], [[9dm6]], [[9efc]], [[9efr]], [[9efx]], [[9egf]], [[9egu]], [[9eu0]], [[9ggh]], [[9ggk]], [[9mqp]] – zHDAC6 catalytic domain 2 + inhibitor <br /> **[[6uo4]], [[6uo7]], [[6uob]], [[6uoc]], [[6wyo]] – zHDAC6 catalytic domain (mutant) + inhibitor <br /> **[[5eei]], [[5w5k]], [[6csp]], [[6csq]], [[6csr]], [[6css]] – zHDAC6 catalytic domain + SAHA derivative<br /> **[[6wyp]], [[6wyq]] – zHDAC6 catalytic domain (mutant) + SAHA derivative<br /> **[[6wsj]], [[8eqi]] – zHDAC6 catalytic domain 2 + peptide <br /> **[[5efj]] – zHDAC6 catalytic domain 2 + HC toxin <br /> **[[53fj]], [[5efk]], [[5efn]] – zHDAC6 catalytic domain (mutant) + peptide <br /> **[[8a8z]] – zHDAC6 CD2 domain 440-798 + inhibitor <br /> *HDAC15<br /> **[[6j6t]] – AtHDAC15 HD domain <br /> *'''HDAC class III'''<br /> *SIRT1 or NAD-dependent protein deacetylase sirtuin-1<br /> **[[4ig9]] – hSIRT1 + Zn<br /> **[[4i5i]] – hSIRT1 + NAD + indole + Zn<br /> **[[4if6]], [[4kxq]] – hSIRT1 + ADP-ribose + Zn<br /> **[[5btr]] – hSIRT1 + acetyl lysine peptide + resveratol + Zn<br /> **[[4zzh]] – hSIRT1 + activator + Zn<br /> **[[4zzi]] – hSIRT1 + activator + inhibitor + Zn<br /> **[[4zzj]] – hSIRT1 + acetyl lysine peptide + activator + Zn<br /> *SIRT2<br /> **[[1j8f]], [[3zgo]], [[9s44]] – hSIRT2 + Zn<br /> **[[5yqo]], [[5yqn]], [[5yqm]], [[5yql]] – hSIRT2 + inhibitor + Zn<br /> **[[5y0z]] – hSIRT2 (mutant) + inhibitor + Zn<br /> **[[3zgv]], [[5d7o]] – hSIRT2+ ADP ribose + Zn<br /> **[[4y6q]] – hSIRT2+ ADP ribose derivative + Zn<br /> **[[4l3o]], [[4y6l]], [[4y6o]] – hSIRT2 + acetyl lysine peptide + Zn<br /> **[[4x3o]], [[4x3p]], [[6l65]], [[6l66]], [[6l71]], [[7bos]], [[7bot]] – hSIRT2 + myristoyl peptide + Zn<br /> **[[4rmg]], [[5dy4]], [[5dy5]], [[5y5n]], [[5mat]], [[6nr0]] – hSIRT2 + inhibitor + Zn<br /> **[[6qcn]] – hSIRT2 + ADP-ribose + quercetin derivative + Zn<br /> **[[5d7p]], [[5d7q]], [[5mar]] – hSIRT2 + inhibitor + ADP-ribose + Zn<br /> **[[4rmh]], [[4rmi]] – hSIRT2 + acetyl lysine peptide + inhibitor + Zn<br /> **[[4r8m]] – hSIRT2 + peptide + tridecanethial + Zn<br /> **[[4rmj]] – hSIRT2 + ADP-ribose + nicotinamide + Zn <br /> **[[5g4c]] – hSIRT2 + carba-NAD + Zn&lt;br/ &gt;<br /> **[[5fyq]] – hSIRT2 + RAN AA peptide + Zn&lt;br/ &gt;<br /> **[[5dy5]] – hSIRT2 + thiazole derivative + piperazine derivative + Zn&lt;br/ &gt;<br /> **[[5dy4]] – hSIRT2 + thiazole derivative + NAD + Zn&lt;br/ &gt;<br /> **[[5d7q]], [[5d7p]], [[5d7o]] – hSIRT2 + oxolan derivative + Zn&lt;br/ &gt;<br /> **[[2hjh]] – ySIRT2 + pseudosubstrate + nicotinamide + Zn <br /> **[[4iao]] – ySIRT2 + SIRT4 + ADP-ribose + Zn<br /> *SIRT3<br /> **[[5d7n]] – hSIRT3 + Zn<br /> **[[3gls]] – hSIRT3 (mutant) + Zn<br /> **[[3glu]], [[5y4h]], [[5ytk]] – hSIRT3 + peptide + Zn<br /> **[[6iso]] – hSIRT3 + histone peptide + Zn<br /> **[[5bwn]], [[5bwo]] – hSIRT3 + palmitoyl H3K9 peptide + Zn<br /> **[[5bwl]] – hSIRT3 + succinyl peptide + Zn<br /> **[[3glr]], [[3glt]], [[4bve]], [[4fvt]], [[6iso]] – hSIRT3 + acetyl lysine peptide + Zn<br /> **[[4hd8]] – hSIRT3 + acetyl lysine peptide + piceatannol + Zn<br /> **[[4fz3]] – hSIRT3 + acetyl lysine peptide + coumarine derivative + Zn<br /> **[[4c78]], [[4c7b]] – hSIRT3 + acetyl lysine peptide + resveratol derivative + Zn<br /> **[[5z94]], [[5z93]], [[5zgc]] – hSIRT3 + histone peptide + Zn<br /> **[[4jsr]], [[4jt8]], [[4jt9]], [[4o8z]] – hSIRT3 + inhibitor + Zn<br /> **[[4gbn5]] – hSIRT3 + inhibitor + carba-NAD + Zn&lt;br/ &gt;<br /> **[[4bv3]] – hSIRT3 + inhibitor + NAD + ADP-ribose + Zn<br /> **[[4bvb]], [[4bvh]] – hSIRT3 + inhibitor + ADP-ribose + Zn<br /> **[[4bvf]], [[4bvg]] – hSIRT3 + acetyl lysine peptide + inhibitor + Zn<br /> **[[5h4d]] – hSIRT3 + agonist + NAD + Zn&lt;br/ &gt;<br /> *SIRT4<br /> **[[5ojn]] – hSIRT4 + ADP-ribose + Zn – ''Xenopus tropicalis''<br /> *SIRT5<br /> **[[2b4y]], [[4bn4]] – hSIRT5 + ADP-ribose + Zn<br /> **[[2nyr]], [[5xhs]] – hSIRT5 + inhibitor + Zn<br /> **[[6ljk]], [[6ljm]], [[6ljn]] – hSIRT5 + peptide substrate + Zn<br /> **[[3rig]], [[3riy]], [[4f4u]] – hSIRT5 + acetyl lysine peptide + Zn<br /> **[[4gic]] – hSIRT5 + acetyl lysine peptide + carba-NAD + Zn&lt;br/ &gt;<br /> **[[4f56]] – hSIRT5 + peptide + intermediate + Zn<br /> **[[4hda]] – hSIRT5 + acetyl lysine peptide + resveratrol + Zn<br /> **[[6ace]], [[6acl]], [[6aco]], [[6acp]] – hSIRT5 + succinyl peptide + Zn<br /> **[[4utn]], [[4utr]], [[4utv]], [[4utx]], [[4utz]], [[4uu7]], [[4uu8]], [[4uua]], [[4uub]], [[6fkz]], [[6fky]], [[6flg]] – zSIRT5 + acetyl lysine peptide + inhibitor + Zn <br /> **[[6enx]], [[6eo0]], [[6eqs]] – zSIRT5 + inhibitor + Zn <br /> **[[5ojo]] – zSIRT5 + CPS1 peptide + Zn <br /> *SIRT6<br /> **[[3k35]], [[6xuy]], [[6xv6]] – hSIRT6 + ADP-ribose + Zn<br /> **[[5x16]] – hSIRT6 + oxolan derivative + Zn<br /> **[[6hoy]] – hSIRT6 + ADP-ribose + trichostatin + Zn<br /> **[[6qcd]], [[6qce]], [[6qch]], [[6qcj]] – hSIRT6 + ADP-ribose + quercetin derivative + Zn<br /> **[[3pki]], [[3pkj]] – hSIRT6 (mutant) + ADP-ribose derivative + Zn<br /> **[[3zg6]] – hSIRT6 + acetyl lysine peptide + ADP-ribose + Zn<br /> **[[5mfz]], [[5mfp]], [[5mf6]], [[5mgn]], [[6xv1]], [[6xvg]], [[6zu4]] – hSIRT6 + activator + Zn<br /> **[[5y2f]], [[7cl0]], [[7cl1]] – hSIRT6 + peptide activator + Zn<br /> *SIRT7<br /> **[[5iqz]] – hSIRT7 N-terminal<br /> *HDAC-like<br /> **[[1zz0]], [[5g1b]] – AbHDAH – ''Alcalifenaceae bacterium''<br /> **[[1zz3]], [[2gh6]], [[2vcg]], [[5g1a]], [[5g1c]], [[5g3w]] – AbHDAH + inhibitor <br /> **[[5g17]] – AbHDAH (mutant) + inhibitor <br /> **[[1zz1]] – AbHDAH + SAHA <br /> **[[5g0y]] – PaHDAH – ''Pseudomonas aeruginosa''<br /> **[[5li3]] – PaHDAH + inhibitor &lt;br/&gt;<br /> <br /> }}<br /> <br /> [[Category:Topic Page]]</div>

Openfox https://proteopedia.org/index.php?title=GTPase_KRas_3D_structures&diff=4433739 2026-03-29T15:43:17Z

<p>Openfox: Normalize &lt;br/&gt; usage in #tree blocks</p> <hr /> <div>== 3D Structures of GTPase KRas ==<br /> <br /> Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}<br /> {{#tree:id=OrganizedByTopic|openlevels=0|<br /> *GTPase KRas apo binary complex with nucleotide<br /> **[[5uk9]] – hKRas + GCP + GDP – human <br /> **[[5vq2]] – hKRas + GTP <br /> **[[6god]], [[6mbq]] – hKRas + GNP <br /> **[[4lkp]], [[4obe]], [[5vq8]], [[5w22]], [[6mbt]], [[6mbu]], [[6p0z]], [[7tlk]] – hKRas + GDP <br /> **[[7lgi]] – hKRas + GDP - NMR<br /> **[[9o0r]], [[9o0s]] – hKRas + drug + GDP <br /> **[[7mqu]] – hKRas + drug + GDP - NMR<br /> *GTPase KRas apo complex with inhibitor<br /> **[[5kyk]] – hKRas + inhibitor <br /> **[[6v5l]], [[7tle]], [[8afb]], [[8afc]], [[8afd]], [[8azr]], [[8azv]], [[8jhl]], [[8onv]], [[8s8c]], [[9bai]], [[9bak]], [[9baj]], [[9qpz]] – hKRas + GDP + inhibitor <br /> *GTPase KRas apo complex with protein<br /> **[[6h46]] – hKRas + darpin K13 + GDP <br /> **[[6h47]] – hKRas + darpin K19 <br /> **[[5mlb]], [[5o2s]] – hKRas + darpin K27 + GDP <br /> **[[5mla]], [[5o2t]] – hKRas + darpin 55 + GSP <br /> **[[5o2s]], [[5ufe]] – hKRas + R11.1.6 + GNP <br /> **[[9c15]], [[9cmv]] – hKRas + p110 alpha + GNP <br /> **[[2msc]], [[2msd]] – hKRas + apolipoprotein + GDP - NMR<br /> **[[2mse]] – hKRas + apolipoprotein + A-Raf + GDP - NMR<br /> **[[8dgt]] – hKRas + MKK1 + B-Raf + 14-3-3 protein zeta + ATPgS – Cryo EM<br /> **[[6pts]], [[6ptw]] – hKRas + apolipoprotein + C-Raf + GNP - NMR<br /> **[[6ob2]] – hKRas + neurofibromin + GNP <br /> **[[8qu8]] – hKRas + elongin B,C + pVHL + cullin-2 + Rbx1 + inhibitor + GDP – Cryo EM <br /> **[[6v65]], [[6v6f]] – hKRas + neurofibromin + Hspred1 + GNP <br /> **[[6yr8]], [[6yxw]], [[7ny8]] – hKRas + affirmer K6 + GDP <br /> **[[8rro]] – hKRas + Tcr + HLA + microglobulin + drug + GNP <br /> *GTPase KRas4A apo<br /> **[[8t72]] – hKRas + PNP<br /> **[[8t71]] – hKRas + GDP<br /> **[[8t75]] – hKRas + C-Raf + PNP<br /> **[[8t74]] – hKRas + Raf1 + PNP<br /> **[[7vvb]] – hKRas + SIN1 + PNP<br /> **[[9g0y]], [[9g4b]], [[9ggt]], [[9ggu]], [[9ggv]], [[9ggw]], [[9ggx]], [[9ggy]], [[9ggz]], [[9gh0]], [[9gh1]], [[9gh2]] – hKRas + GDP + inhibitor<br /> *GTPase KRas2B apo<br /> **[[7kyz]] – hKRas + GDP - NMR<br /> **[[9gtk]] – hKRas + Darpin + GDP<br /> *GTPase KRas4B apo<br /> **[[6m9w]], [[8ecr]] – hKRas + GDP<br /> **[[6w4e]] – hKRas + GDP - NMR<br /> **[[6vc8]] – hKRas + PNP<br /> **[[8eie]] – hKRas + GNP<br /> **[[5tar]], [[5tb5]], [[7q9u]] – hKRas + GMP-PDE d + farnesyl + GDP &lt;br<br /> **[[6w4e]] – hKRas + apolipoprotein + GTP - NMR<br /> **[[6w4f]] – hKRas + apolipoprotein + GDP - NMR<br /> **[[6vjj]], [[6xhb]], [[6xi7]] – hKRas + Raf1/CRaf + GNP<br /> *GTPase KRasX2 apo<br /> **[[8dgs]], [[8dgt]] – hKRas + MKK1 + B-Raf + 14-3-3 protein zeta + ATPgS – Cryo EM<br /> *GTPase KRas with oncogenic mutated 12G binary complex with nucleotide<br /> **[[5vpi]], [[5vpz]], [[5vq6]], [[6mnx]] – hKRas (mutant) + GTP <br /> **[[3gft]], [[6mta]] – hKRas (mutant) + GTP analog <br /> **[[5usj]], [[5vpy]], [[6e6f]], [[6goe]], [[6gof]], [[6gog]], [[6gom]], [[6o36]], [[6o46]], [[8ebz]] – hKRas (mutant) + GNP <br /> **[[4l8g]], [[4ldj]], [[4lrw]], [[4ql3]], [[4tq9]], [[4wa7]], [[5uqw]], [[5us4]], [[5vp7]], [[5vq0]], [[5vq1]], [[5whd]], [[6asa]], [[6ase]], [[6bof]], [[6e6g]], [[6mqg]], [[6mqn]], [[6ms9]], [[6pq3]], [[6ws2]], [[6ws4]], [[7c40]], [[7eyx]], [[7f0w]], [[7kmr]], [[8fmi]], [[8fmj]], [[8fmk]], [[8g4f]], [[8stm]], [[8stn]], [[8tvk]], [[8txj]], [[8ty2]], [[8ty8]], [[8ty9]] – hKRas (mutant) + GDP <br /> **[[7g42]], [[8g47]], [[8g4h]] – hKRas (mutant) + GDP – Cryo EM<br /> **[[9dmm]] – hKRas (mutant) + drug + GDP <br /> **[[4dsn]], [[6bp1]], [[6quu]] – hKRas (mutant) + GCP <br /> **[[7lz5]] – hKRas (mutant) + GMPPCP <br /> *GTPase KRas with oncogenic mutated 12G complex with inhibitor<br /> **[[4dso]] – hKRas (mutant) + inhibitor + GSP <br /> **[[4dst]], [[6gj5]], [[6gj6]], [[6gj7]], [[6gj8]], [[6quv]], [[6quw]], [[6qux]] – hKRas (mutant) + inhibitor + GCP <br /> **[[4nmm]], [[7ok3]], [[7ok4]] – hKRas (mutant) + inhibitor <br /> **[[4dsu]], [[4luc]], [[4lv6]], [[4lyf]], [[4lyh]], [[4lyj]], [[4m1o]], [[4m1s]], [[4m1t]], [[4m1w]], [[4m1y]], [[4m21]], [[4m22]], [[4epr]], [[4ept]], [[4epv]], [[4epw]], [[4epx]], [[4epy]], [[4q01]], [[4q02]], [[4q03]], [[4pzy]], [[4pzz]], [[5f2e]], [[5vbm]], [[5v6s]], [[5v6v]], [[5v9o]], [[5v9u]], [[5xco]], [[5yxz]], [[5yy1]], [[6ark]], [[6b0v]], [[6b0y]], [[6n2j]], [[6n2k]], [[6oim]], [[6p8w]], [[6p8x]], [[6p8y]], [[6p8z]], [[6pgo]], [[6pgp]], [[6t5b]], [[6tam]], [[6tan]], [[6usx]], [[6usz]], [[6ut0]], [[6zl5]], [[7a1w]], [[7a1x]], [[7a1y]], [[7a47]], [[7acq]], [[7ew9]], [[7ewa]], [[7ewb]], [[7o70]], [[7oo7]], [[7r0m]], [[7r0n]], [[7r0q]], [[7rp4]], [[7tlg]], [[7u8h]], [[7ycc]], [[7yce]], [[8aq5]], [[8aq7]], [[8azx]], [[8azy]], [[8azz]], [[8b00]], [[8b6i]], [[8b78]], [[8cx5]], [[8dni]], [[8dnj]], [[8dnk]], [[8qug]], [[8r7w]], [[8r7x]], [[8t4v]], [[8txe]], [[8txg]], [[8txh]], [[8txk]], [[8un3]], [[8un4]], [[8un5]], [[8v3a]], [[8wb1]], [[8x6r]], [[9bl0]], [[9e5d]], [[9e5f]], [[9e9h]], [[9e9i]], [[9gbj]], [[9kpn]], [[9u50]], [[9u5t]] – hKRas (mutant) + GDP + inhibitor <br /> **[[5ocg]], [[5oco]], [[5oct]], [[5vbz]], [[6f76]], [[6fa1]], [[6fa2]], [[6fa3]], [[6fa4]], [[6gqt]], [[6gqx]], [[6gqw]], [[6gqy]], [[8jgd]], [[8v39]] – hKRas (mutant) + GNP + inhibitor <br /> **[[6zli]] – hKRas (mutant) + GCP + inhibitor <br /> **[[7aca]], [[7acf]], [[7ach]], [[7t47]] – hKRas (mutant) + GPPCP + inhibitor <br /> **[[9usb]] – hKRas (mutant) + GPPNP + inhibitor <br /> **[[5v71]], [[5v9l]], [[6t5v]] – hKRas (mutant) + GDP + quinazoline inhibitor <br /> *GTPase KRas with oncogenic mutated 12G complex with protein<br /> **[[5wha]], [[5whb]] – hKRas (mutant) + miniprotein + GDP <br /> **[[5whe]], [[5wlb]], [[5wpl]], [[5wpm]] – hKRas (mutant) + miniprotein + GNP <br /> **[[7scw]], [[7scx]] – hKRas (mutant) + RALGDS-like + GSP <br /> **[[5ufq]] – hKRas (mutant) + R11.1.6 + GNP <br /> **[[6wgn]] – hKRas (mutant) + peptide inhibitor + GNP <br /> **[[7c41]], [[7w5r]], [[7yuz]] – hKRas (mutant) + peptide inhibitor + GDP <br /> **[[7mdp]], [[7rp2]], [[7rp3]] – hKRas (mutant) + antibody + GDP <br /> **[[7yv1]], [[8vgq]] – hKRas (mutant) + antibody + inhibitor + GDP <br /> **[[8be3]], [[8ezg]] – hKRas (mutant) + nanobody + GDP <br /> **[[8f0m]] – hKRas (mutant) + monobody + GDP <br /> **[[8be4]], [[8be5]] – hKRas (mutant) + nanobody + son of sevenless + GDP <br /> **[[7rov]] – hKRas (mutant) + peptide inhibitor + GMPPCP <br /> **[[8jjs]] – hKRas (mutant) + peptide inhibitor + GDP &lt;br/&gt;&lt;br/&gt;+ MKK1 + B-Raf + 14-3-3 protein zeta + ATPgS – Cryo EM<br /> **[[6xgu]], [[6xgv]] – hKRas (mutant) + C-Raf + GNP<br /> **[[6cc9]], [[6cch]], [[6ccx]] – hKRas (mutant) + apolipoprotein + inhibitor + GNP - NMR<br /> **[[6epl]] – hKRas (mutant) + son of sevenless homolog 1<br /> **[[7kfz]] – hKRas (mutant) + son of sevenless homolog 1 + GNP<br /> **[[6epm]], [[6epn]], [[6epo]], [[6epp]] – hKRas (mutant) + son of sevenless homolog 1 + inhibitor<br /> **[[6ob3]] – hKRas (mutant) + neurofibromin + GNP <br /> **[[8qvu]], [[8qw6]], [[8qw7]] – hKRas (mutant) + elongin B,C + pVHL + GDP <br /> **[[9bgh]], [[9bho]], [[9bhp]], [[9bhq]] – hKRas (mutant) + PPIASE + inhibitor + GDP <br /> **[[8g9p]], [[8g9q]], [[8tbf]], [[8tbh]], [[8tbj]], [[8tbk]], [[8tbl]], [[8tbm]], [[8tbn]], [[9ax6]], [[9bfv]], [[9bfw]], [[9bfx]], [[9bfy]], [[9bfz]], [[9bg1]], [[9bg2]], [[9bg4]], [[9bg7]], [[9bi1]], [[9bi2]], [[9ct7]], [[9e3s]] – hKRas (mutant) + PPIASE + inhibitor + GNP <br /> **[[9bg5]], [[9bg6]], [[9bga]], [[9bgb]], [[9bgc]], [[9ct8]], [[9ct9]], [[9cta]], [[9ctb]] – hKRas (mutant) + PPIASE + drug + GNP <br /> **[[6t5u]] – KRas (mutant) + V-ki-ras2 + inhibitor + GDP -hedgehog <br /> *GTPase KRas4A with oncogenic mutated 12G<br /> **[[8t73]] – hKRas (mutant) + GDP<br /> *GTPase KRas4B with oncogenic mutated 12G<br /> **[[7t1f]], [[8blr]], [[8cpr]], [[8edy]], [[8eer]] – hKRas (mutant) + GDP<br /> **[[6cu6]] – hKRas (mutant) + PNP<br /> **[[8b69]] – hKRas (mutant) + Rgl2 + GNP <br /> **[[7rsc]], [[7rse]] – hKRas (mutant) + apolipoprotein + GSP - NMR<br /> **[[6xha]], [[8epw]] – hKRas (mutant) + Raf1/CRaf + PNP<br /> **[[7lc1]], [[7lc2]] – hKRas (mutant) + SIN1+ GNP <br /> **[[7rpz]], [[7rt1]], [[7rt2]], [[7rt3]], [[7rt4]], [[7rt5]], [[9kpm]], [[9kpn]] – hKRas (mutant) + GDP + inhibitor&lt;br/&gt;<br /> <br /> }}<br /> <br /> [[Category:Topic Page]]</div>

Openfox https://proteopedia.org/index.php?title=FOX_3D_structures&diff=4433738 2026-03-29T15:43:17Z

<p>Openfox: Normalize &lt;br/&gt; usage in #tree blocks</p> <hr /> <div>Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}} - For a general description of the protein see [[FOX]] ([[Forkhead box protein|Forkhead Box]])<br /> {{#tree:id=OrganizedByTopic|openlevels=0|<br /> *FOXA1<br /> **[[8vfy]], [[8vfz]], [[8vg1]], [[8vg2]] – hFOXA1 + nucleosome – human – Cryo EM<br /> *FOXA2<br /> **[[5x07]], [[7yze]], [[7yzf]] – hFOXA2 DBD 149-273 + DNA<br /> *FOXC2<br /> **[[6akp]], [[6ako]], [[6lbm]], [[6o3t]] – hFOXC2 DBD 72-172 + DNA&lt;br/&gt;<br /> *FOXG1<br /> **[[7cby]] – hFOXG1 DBD 178-281 + DNA<br /> *FOXH1<br /> **[[7yzb]] – hFOXH1 + DNA <br /> **[[7yz7]], [[7yza]], [[7yzc]], [[7yzd]] – zFOXH1 + DNA - zebrafish<br /> **[[7yzg]] – FOXH1 + DNA - frog<br /> *FOXK1<br /> **[[8bzm]] – hFOXK1 141-235 + Flf-1 + DNA<br /> **[[2a3s]], [[2d2w]] – mFOXK1 DBD 287-387 – NMR<br /> *FOXK2<br /> **[[2c6y]] – hFOXK2 DBD 251-348 + DNA<br /> *FOXL2<br /> **[[7vou]], [[7vov]], [[7vox]] – hFOXL2 DBD 46-148 + DNA<br /> *FOXM1<br /> **[[3g73]], [[7fj2]] – hFOXM1 DBD 222-360 + DNA<br /> **[[6osw]] – zFOXM1 1-106, 569-623 (mutant) - NMR<br /> *FOXN1<br /> **[[5ocn]] – hFOXN1 forkhead domain 270-366<br /> **[[6el8]] – hFOXN1 forkhead domain + DNA <br /> *FOXN3<br /> **[[6ncm]], [[6nce]] – hFOXN3 DBD 112-210 + DNA<br /> *FOXO1<br /> **[[6qvw]] - hFOXO1 DBD – human - NMR<br /> **[[3co6]], [[3coa]], [[3co7]], [[5dui]], [[6lbi]] – hFOXO1 DBD 151-259 + DNA <br /> **[[4lg0]] - hFOXO1 DBD + DNA + ETS1<br /> *FOXO3<br /> **[[2uzk]] – hFOXO3 DBD 158-253 + DNA<br /> **[[2k86]] - hFOXO3 DBD domain – NMR<br /> **[[2lqh]], [[2lqi]] - hFOXO3 transactivation domain 101-152 + CREB-binding protein – NMR<br /> *FOXO4<br /> **[[3l2c]] – hFOXO4 DBD 86-187 + DNA<br /> **[[1e17]] – hFOXO4 DBD - NMR<br /> *FOXP1<br /> **[[2kiu]] – hFOXP1 DBD 462-548 (mutant) - NMR<br /> *FOXP2<br /> **[[2a07]] – hFOXP2 FH domain 502-594 + DNA<br /> **[[2as5]] – hFOXP2 FH domain + nuclear factor of activated T-cell + DNA<br /> *FOXP3<br /> **[[3qrf]] – hFOXP3 DBD + nuclear factor of activated T-cell + DNA<br /> **[[4wk8]] – hFOXP3 DBD 336-417 + DNA <br /> **[[4i1l]] – mFOXP3 residues 189-276 – mouse<br /> **[[8sro]], [[8srp]] – mFOXP3 residues 188-423 + DNA – Cryo EM&lt;br/&gt;<br /> <br /> }}<br /> <br /> [[Category:Topic Page]]</div>

Openfox https://proteopedia.org/index.php?title=Dual_specificity_protein_kinase_3D_structures&diff=4433737 2026-03-29T15:43:17Z

<p>Openfox: Normalize &lt;br/&gt; usage in #tree blocks</p> <hr /> <div>==3D structures of dual specificity protein kinase==<br /> <br /> Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}<br /> {{#tree:id=OrganizedByTopic|openlevels=0|<br /> *CLK1 kinase domain<br /> **[[1z57]] – hCLK1 + himenialdizine – human<br /> **[[2vag]], [[5j1v]], [[5j1w]], [[5x8i]], [[6ft8]], [[6ft9]], [[6fyo]], [[6i5h]], [[6i5i]], [[6i5k]], [[6i5l]], [[6khd]], [[6q8k]], [[6q8p]], [[6qty]], [[6r3d]], [[6r6e]], [[6r6x]], [[6r8j]], [[6raa]], [[6tw2]], [[6yta]], [[6yte]], [[6ytg]], [[6yti]], [[6z4z]], [[6z50]], [[6zln]], [[7ak3]], [[7o9y]], [[7oa0]], [[7opg]], [[8uwn]] – hCLK1 + inhibitor<br /> **[[6ytd]] – hCLK1 (mutant) + inhibitor<br /> **[[6g33]] – hCLK1 + iodotubercidine inhibitor<br /> **[[8p08]] – hCLK1 + drug<br /> *CLK2 kinase domain<br /> **[[3nr9]] – hCLK2<br /> **[[5unp]], [[6fyl]], [[6fyk]], [[6fyi]], [[6khe]] – hCLK2 + inhibitor<br /> *CLK3<br /> **[[2eu9]] – hCLK3<br /> **[[2exe]] – hCLK3 kinase domain, phosphorylated<br /> **[[2wu6]], [[2wu7]], [[6ft7]], [[6fyp]], [[6fyr]], [[6rct]], [[6khf]], [[6ytw]], [[6yu1]], [[6z51]], [[6z52]], [[6z53]], [[6z54]], [[6z55]], [[9ez3]] – hCLK3 kinase domain + inhibitor<br /> **[[6yty]], [[6z2v]] – hCLK3 (mutant) + inhibitor<br /> **[[3raw]] - hCLK3 kinase domain + leucettine<br /> *CLK4 kinase domain<br /> **[[6fyv]] – hCLK4 + inhibitor<br /> *TTK; Domains: TPR 55-210, kinase 400-808 <br /> **[[3cek]], [[3dbq]], [[2zmc]], [[6gvj]] – hTTK kinase domain<br /> **[[4b94]], [[4h7x]], [[4h7y]] - hTTK TPR domain<br /> **[[3gfw]] - hTTK kinase domain + pyrolo-pyridin ligand<br /> **[[3h9f]] - hTTK kinase domain + pyrimidino-diazepin ligand<br /> **[[2x9e]], [[3vqu]], [[3w1f]], [[3wyx]], [[3wyy]], [[3wzj]], [[3wzk]], [[4bhz]], [[4bi0]], [[4bi1]], [[4bi2]], [[4c4e]], [[4c4f]], [[4c4g]], [[4c4h]], [[4c4i]], [[4c4j]], [[4cv8]], [[4cv9]], [[4cva]], [[4d2s]], [[4js8]], [[4jt3]], [[4o6l]], [[4zeg]], [[5ap0]], [[5ap1]], [[5ap2]], [[5eh0]], [[5ehl]], [[5eho]], [[5ehy]], [[5ei2]], [[5ei6]], [[5ei8]], [[5n9s]], [[5n7v]], [[5n84]], [[5n87]], [[5n93]], [[5na0]], [[6b4w]], [[6h3k]], [[6n6o]], [[6tn9]], [[6tnb]], [[6tnc]], [[6tnd]], [[7chm]], [[7chn]], [[7cht]], [[7cil]], [[7cja]], [[7clh]], [[7lqd]] - hTTK kinase domain + inhibitor<br /> **[[2zmd]], [[5ap3]], [[5ap4]], [[5ap5]], [[5ap6]], [[5ap7]], [[5o91]], [[5ntt]], [[5nad]], [[5mrb]] - hTTK kinase domain (mutant) + inhibitor<br /> **[[3hmn]] - hTTK kinase domain + ATP<br /> **[[3hmo]] - hTTK kinase domain + staurosporine<br /> **[[3hmp]] - hTTK kinase domain + quinazoline ligand<br /> **[[5ljj]] - hTTK kinase domain + reversine&lt;br/&gt;<br /> }}<br /> <br /> [[Category:Topic Page]]</div>

Openfox https://proteopedia.org/index.php?title=Autophagy-related_protein_3D_structures&diff=4433736 2026-03-29T15:43:17Z

<p>Openfox: Normalize &lt;br/&gt; usage in #tree blocks</p> <hr /> <div>== 3D Structures of autophagy-related protein ==<br /> <br /> Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}<br /> {{#tree:id=OrganizedByTopic|openlevels=0|<br /> *Autophagy-related protein 2<br /> **[[8kby]] – hAtg2a – human - Cryo EM<br /> **[[8kbx]] – hAtg2a + WIPI4 - Cryo EM<br /> **[[6a9e]], [[6a9j]] – yAtg2 21-240/endolysin - yeast&lt;br/&gt;<br /> *Autophagy-related protein 3<br /> **[[8fkm]] – hAtg3 26-89, 191-314 - NMR<br /> **[[2dyt]], [[6ojj]] – yAtg3 <br /> *Autophagy-related protein 4<br /> **[[2z0d]], [[2z0e]], [[2zzp]] – hAtg4B (mutant) + LC3 <br /> **[[2p82]] – hAtg4A<br /> *Autophagy-related protein 4B<br /> **[[5lxi]], [[5lxh]] – hAtg4B + GABARAP-L1<br /> *Autophagy-related protein 5<br /> **[[4tq1]], [[7w36]] – hAtg5 + peptide<br /> **[[3vqi]] – KmAtg5 – ''Kluyveromyces marxianus''<br /> *Autophagy-related protein 7<br /> **[[3vh1]], [[3vh2]] – yAtg7 <br /> **[[3ruj]], [[3t7f]] – yAtg7 N terminal <br /> **[[3t7h]], [[4gsj]] – yAtg7 N terminal (mutant)<br /> **[[3t7e]] – yAtg7 C terminal <br /> *Autophagy-related protein 8<br /> **[[3m95]] – Atg8 – silk worm <br /> **[[7dht]] – AtAtg8F – ''Arabidopsis thaliana'' - NMR<br /> **[[6aag]] – yAtg8 <br /> **[[2kq7]] – yAtg8 - NMR <br /> **[[2kwc]] – yAtg8 (mutant) - NMR <br /> **[[6wy6]] – yAtg8 + Ede1 peptide<br /> **[[6aaf]] – yAtg8 + Hfl1 peptide<br /> *Autophagy-related protein 9<br /> **[[6wqz]], [[6wr4]], [[7jlo]], [[7jlp]], [[7jlq]], [[8kbz]] – hAtg9A – Cryo EM<br /> **[[8poe]] – hAtg9B – Cryo EM<br /> **[[7d0i]] – Atg9 – fission yeast – Cryo EM<br /> *Autophagy-related protein 10<br /> **[[4ebr]] – yAtg10 <br /> *Autophagy-related protein 11<br /> **[[6vzf]] – yAtg11 coiled-coil domain <br /> *Autophagy-related protein 12B<br /> **[[1wz3]] – AtAtg12B <br /> **[[7eu4]] – AtAtg12B + Atg3 peptide<br /> *Autophagy-related protein 13<br /> **[[6kbm]], [[6kbn]] – yAtg13 567-695 + Vac8 <br /> *Autophagy-related protein 16<br /> **[[3a7o]] – yAtg16 coiled-coil domain <br /> **[[3a7p]] – yAtg16 coiled-coil domain (mutant)<br /> **[[6sur]], [[6y09]] – mAtg16 141-265 + Rab33B + GTP - mouse<br /> **[[6zay]] – mAtg16 141-265 + Rab33B + GDP<br /> *Autophagy-related protein 18<br /> **[[6kyb]] – yAtg18 <br /> **[[8afq]], [[8afw]], [[8afx]] – yAtg18 – Cryo EM<br /> *Autophagy-related protein 19<br /> **[[2kzb]] – yAtg19 a-mannosidase binding domain - NMR <br /> *Autophagy-related protein 101<br /> **[[4wzg]] – hAtg101 <br /> *Autophagy-related protein 1+13<br /> **[[4p1n]] – KmAtg1 + KmAtg13<br /> *Autophagy-related protein 2a+9a<br /> **[[8kc3]], [[8y1l]] – hAtg2a + hAtg9a + WIPI4 – Cryo EM<br /> *Autophagy-related protein 3+5+12+16<br /> **[[4naw]] – hAtg3 peptide + hAtg5 + hAtg12 + hAtg16-1 N terminal<br /> *Autophagy-related protein 5+12+16<br /> **[[4gdk]], [[4gdl]] – hAtg5 + hAtg12 + hAtg16-1 N terminal<br /> **[[3w1s]] – yAtg5 + yAtg12 + yAtg16 N terminal<br /> *Autophagy-related protein 5+16<br /> **[[4tq0]] – hAtg5 + hAtg16-1 N terminal<br /> **[[2dym]], [[2dyo]] – yAtg5 + yAtg16 N terminal<br /> *Autophagy-related protein 7+3<br /> **[[3vx8]] – AtAtg7 N terminal + AtAtg3 <br /> **[[3t7g]] – yAtg7 N terminal + yAtg3 peptide<br /> **[[4gsl]] – yAtg7 + yAtg3 (mutant)<br /> *Autophagy-related protein 7+8<br /> **[[3vh3]] – yAtg7 C terminal + yAtg8 (mutant)<br /> **[[2li5]] – yAtg7 peptide + yAtg8 (mutant)<br /> **[[3rui]] – yAtg7 C terminal (mutant) + yAtg8 <br /> **[[3vh4]] – yAtg7 C terminal + yAtg8 (mutant) + ATP<br /> *Autophagy-related protein 7+10<br /> **[[4gsk]] – yAtg7 (mutant) + yAtg10 (mutant)<br /> *Autophagy-related protein 8+19<br /> **[[2zpn]] – yAtg8 + yAtg19 peptide<br /> *Autophagy-related protein 8+32<br /> **[[3vxw]] – yAtg8 + yAtg32 peptide<br /> *Autophagy-related protein 8+40<br /> **[[7brn]] – yAtg8 + yAtg40 peptide<br /> *Autophagy-related protein 16+21<br /> **[[6rgo]] – Atg16 + Atg21 –'' Kluyveromyces lactis''<br /> *Autophagy-related protein 13+101<br /> **[[8do8]] – hAtg13 + hAtg101 <br /> **[[4yk8]] – Atg13 + Atg101 – fission yeast<br /> *Autophagy-related protein 17+29+31<br /> **[[4hpq]] – yAtg17 peptide + yAtg29 + yAtg31 (mutant)<br /> *Autophagy-related protein 13+17+29+31<br /> **[[4p1w]] – yAtg13 + yAtg17 peptide + yAtg29 + yAtg31&lt;br/&gt;<br /> <br /> }}<br /> [[Category:Topic Page]]</div>

Openfox https://proteopedia.org/index.php?title=Adenosine_deaminase_3D_structures&diff=4433735 2026-03-29T15:43:16Z

<p>Openfox: Normalize &lt;br/&gt; usage in #tree blocks</p> <hr /> <div>== 3D Structures of [[Adenosine deaminase]] ==<br /> <br /> Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}<br /> {{#tree:id=OrganizedByTopic|openlevels=0|<br /> *Adenosine deaminase<br /> **[[3iar]] – hADA + Ni - human<br /> **[[7rtg]] – hADA1 + Zn<br /> **[[3lgd]] – hADA2 + Zn<br /> **[[1vfl]] – bADA + Zn - bovine<br /> **[[3mvt]] – mADA – mouse<br /> **[[3mvi]] – mADA + Zn<br /> **[[3ou8]] – PaADA + Zn – ''Pseudomonas aeruginosa''<br /> **[[2amx]] – ADA + Co – ''Plasmodium yoeli''<br /> **[[4gxw]] – ADA + Zn – ''Burkholderia ambifaria'' <br /> **[[8fnv]], [[8hrc]] – EcADA – ''Escherichia coli'' – Cryo EM<br /> *Adenosine deaminase complex with nucleotide<br /> **[[1krm]] – bADA + Zn + adenosine analog <br /> **[[1add]] – mADA + Zn + deaza-adenosine <br /> **[[3km8]] – mADA (mutant) + Zn + deaza-adenosine <br /> **[[2ada]] – mADA + Zn + transition state analog<br /> **[[1fkw]], [[1fkx]], [[1uio]], [[1uip]] – mADA (mutant) + Zn + adenosine analog<br /> **[[1a4m]] – mADA + Zn + adenosine analog<br /> **[[2pgf]] – PvADA + Zn + adenosine – ''Plasmodium vivax''<br /> **[[2pgr]] – PvADA + Zn + adenosine analog<br /> **[[2qvn]] – PvADA + guanosine <br /> **[[3pan]] – PaADA + Zn + hypoxanthine <br /> **[[3pao]] – PaADA + Zn + adenine <br /> **[[3rys]] – ADA + Zn + adenine – ''Arthrobacter aurescens''<br /> **[[6ii7]] – ADA (mutant) + Zn + hypoxanthine + inosine – ''Plasmodium falciparum''<br /> *Adenosine deaminase complex with inhibitor<br /> **[[3lgg]] – hADA2 + Zn + coformycin<br /> **[[1ndv]], [[1ndw]], [[1ndy]], [[1ndz]], [[1o5r]], [[1qxl]], [[1uml]], [[1v79]], [[1v7a]], [[1wxy]], [[1wxz]], [[2e1w]], [[2z7g]] – bADA + Zn + inhibitor<br /> **[[1a4l]] – mADA + Zn + inhibitor<br /> **[[3ewc]] – PvADA + Zn + inhibitor<br /> **[[3ewd]] – PvADA (mutant) + Zn + inhibitor<br /> **[[3pbm]] – PaADA + Zn + chloropurine <br /> **[[6n9m]] – ADA + Zn + pentostatin – ''Salmonella typhimurium''<br /> **[[6n91]] – ADA + Zn + pentostatin – ''Vibrio cholerae''<br /> *Adenosine deaminase complex with protein<br /> **[[1w1i]] – bADA + Zn + dipeptidyl peptidase IV<br /> **[[2bgn]] – bADA + Zn + dipeptidyl peptidase IV + HIV1 TAT protein peptide<br /> *Double-stranded RNA-specific adenosine deaminase; domains – Zα 125-201; Zβ 294-366; 3rd RNA-binding 708-801; catalytic 299-729<br /> **[[1xmk]] – hADA Zα domain <br /> **[[1qgp]] – hADA Zα domain - NMR<br /> **[[2l54]], [[8gbc]], [[8gbd]] – hADA Zα domain (mutant) - NMR<br /> **[[2acj]], [[1qbj]], [[2gxb]], [[3f21]], [[3f22]], [[3f23]], [[3irq]], [[3irr]], [[5zu1]], [[5zuo]], [[5zup]] – hADA Zα domain + DNA<br /> **[[7zj1]] – hADA 3rd RNA-binding domain <br /> **[[2mdr]] – hADA 3rd RNA-binding domain - NMR<br /> **[[7zlq]] – hADA 3rd RNA-binding domain + RNA <br /> **[[1zy7]] – hADA catalytic domain + inositol hexakisphosphate<br /> **[[6vff]] – hADA catalytic domain + inositol hexakisphosphate + RNA<br /> **[[6d06]], [[5hp2]], [[5hp3]], [[5ed1]], [[5ed2]], [[7kfn]], [[8e0f]] – hADA catalytic domain + RNA<br /> **[[8e4x]] – hADA catalytic domain (mutant) + RNA<br /> **[[7c0j]] – hADA catalytic domain/histone H5 (mutant) + DNA<br /> **[[2b7t]], [[2b7v]] – rADA 1st RNA-binding domain – rat<br /> **[[2l3c]], [[2l3j]] – rADA 1st RNA-binding domain + RNA – NMR<br /> **[[2l2k]] – mADA residues 230-301 + RNA – NMR<br /> **[[2ljh]] – ADA DRBM domain – ''Drosophila melanogaster'' – NMR<br /> *tRNA-specific adenosine deaminase<br /> **[[3dh1]] – hADA subunit ADAT2<br /> **[[7nz7]], [[7nz8]], [[7nz9]] – mADA subunits ADAT2/ADAT3<br /> **[[7bv5]] – ADA subunits TAD2, TAD3 + Zn - yeast<br /> **[[7eey]] – ADA subunit TAD2 N-terminal – fission yeast<br /> **[[1z3a]], [[8e2r]], [[8e2s]]] – EcADA <br /> **[[8e2p]], [[8e2q]] – EcADA + DNA<br /> **[[6vpc]] – EcADA in SPCAS9 DNA adenine base editor – Cryo EM<br /> **[[2b3j]] – ADA + Zn + tRNA stem-loop – ''Staphylococcus aureus''<br /> **[[1wwr]] – ADA – ''Aquifex aeolicus''<br /> **[[2nx8]] – ADA (mutant) + Zn – ''Streptococcus pyogenes''<br /> **[[7cph]] – ADA + Zn – ''Bacillus subtilis''&lt;br/&gt;<br /> <br /> <br /> }}<br /> [[Category: Topic Page]]</div>

Openfox https://proteopedia.org/index.php?title=Abscisic_acid_receptor_3D_structures&diff=4433734 2026-03-29T15:43:16Z

<p>Openfox: Normalize &lt;br/&gt; usage in #tree blocks</p> <hr /> <div>== 3D Structures of [[Abscisic acid receptor]] ==<br /> <br /> Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}<br /> {{#tree:id=OrganizedByTopic|openlevels=0|<br /> *Abscisic acid receptor PYL1&lt;br/&gt;''<br /> **[[3kay]] – AtPYL1 -''Arabidopsis thaliana''<br /> **[[7z1p]] – AtPYL1 (mutant) <br /> **[[7z1r]] – AtPYL1 (mutant) + ABA<br /> **[[7z1s]] – AtPYL1 + ligand <br /> **[[7z1q]] – AtPYL1 (mutant) + ligand <br /> **[[3jrs]] – AtPYL1 + ABA derivative <br /> **[[3kdj]], [[3jrq]] – AtPYL1 + protein phosphatase 2C + ABA derivative<br /> **[[3nmn]] – AtPYL1 + protein phosphatase 2C + pyrabactin<br /> **[[3nef]], [[3neg]] – AtPYL1 + pyrabactin <br /> **[[8ay6]], [[8ay7]], [[8ay8]], [[8ay9]], [[8aya]] – PYL1 (mutan) + protein phosphatase 2C + ABA derivative – sweet orange<br /> *Abscisic acid receptor pyrabactin-rsistant PYR1<br /> **[[3k3k]], [[3k90]], [[3wg8]] – AtPYR1 + ABA <br /> **[[3qn1]], [[5or2]], [[5or6]] – AtPYR1 + protein phosphatase 2C + ABA derivative<br /> **[[8ey0]] – AtPYR1 + protein phosphatase 2C + mandipropamide <br /> **[[4wvo]] – AtPYR1 (mutant) + protein phosphatase 2C + mandipropamide <br /> **[[3zvu]] – AtPYR1 (mutant) + protein phosphatase 2C + ABA<br /> **[[3njo]], [[5ur4]] – AtPYR1 + pyrabactin <br /> **[[5ur5]] – AtPYR1 + agonist <br /> **[[5ygv]] – AtPYR1 + antagonist <br /> **[[5ur6]] – AtPYR1 + cyanabactin <br /> **[[5ujv]] – PYR1 + ABA – ''Eschericha coli''<br /> *Abscisic acid receptor PYL2<br /> **[[3kl1]], [[3kaz]], [[3kdh]] – AtPYL2 <br /> **[[5jnn]], [[3kb0]], [[3kdi]] – AtPYL2 + ABA derivative <br /> **[[4lg5]], [[4la7]] – AtPYL2 + protein phosphatase 2C + quinabactin<br /> **[[3nmt]], [[3nmv]] – AtPYL2 (mutant) + protein phosphatase 2C + pyrabactin<br /> **[[4lga]], [[4lgb]], [[5vr7]] – AtPYL2 + protein phosphatase 2C + quinolin derivative<br /> **[[3ujl]], [[3kb3]], [[5vr6]], [[5vro]], [[5vs5]], [[5vsq]], [[5vsr]], [[5vt7]] – AtPYL2 + protein phosphatase 2C + ABA derivative <br /> **[[3nmh]], [[3nj0]], [[3ns2]], [[3nr4]] – AtPYL2 + pyrabactin <br /> **[[3nmp]], [[3nj1]] – AtPYL2 (mutant) + pyrabactin <br /> **[[7mwn]] – AtPYL2 (mutant) + HAB-1 <br /> *Abscisic acid receptor PYL3<br /> **[[3klx]] – AtPYL3 <br /> **[[5jo1]], [[5jo2]], [[4ds8]] – AtPYL3 + protein phosphatase 2C + ABA derivative <br /> **[[4jda]], [[4dsb]], [[4dsc]] – AtPYL3 + ABA derivative <br /> **[[5zch]] – PYL3 + protein phosphatase 2C + ABA derivative - rice<br /> *Abscisic acid receptor PYL5<br /> **[[4jdl]] – AtPYL5 <br /> *Abscisic acid receptor PYL9<br /> **[[3w9r]], [[3oqu]] – AtPYL9 + ABA derivative <br /> *Abscisic acid receptor PYL10<br /> **[[3uqh]], [[3rt2]] – AtPYL10 <br /> **[[3r6p]] – AtPYL10 + ABA <br /> **[[3rt0]] – AtPYL10 + protein phosphatase 2C <br /> **[[6nwb]] – AtPYR10 + hexabactin <br /> **[[6nwc]] – AtPYR10 + agonist <br /> **[[7mlc]], [[7mld]] – AtPYR10 + antabactin <br /> *Abscisic acid receptor PYL13<br /> **[[4n0g]] – AtPYL13 + protein phosphatase 2C <br /> **[[3oji]] – AtPYL13 + pyrabactin &lt;br/&gt;<br /> <br /> }}<br /> [[Category: Topic Page]]</div>

Openfox https://proteopedia.org/index.php?title=Riboswitch_3D_structures&diff=4433733 2026-03-29T15:43:16Z

<p>Openfox: Normalize &lt;br/&gt; usage in #tree blocks</p> <hr /> <div>==3D structures of riboswitch==<br /> <br /> Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}<br /> {{#tree:id=OrganizedByTopic|openlevels=0|<br /> *Adenine riboswitch<br /> **[[1y26]], [[4tzx]], [[4tzy]], [[4xnr]], [[5swd]], [[5swe]], [[5uza]], [[6vwt]], [[6vwv]] – VvAR + adenine – ''Vibrio vulnificus''<br /> **[[5e54]] – VvAR <br /> **[[3ivn]] – BsAR (mutant) – ''Bacillus subtilis''<br /> **[[3la5]] - BsAR (mutant) + azacytosine<br /> *Guanine riboswitch<br /> **[[1y27]] – BsGR residues 185-252 + guanine<br /> **[[2g9c]], [[3fo4]], [[3fo6]], [[3ges]], [[3gog]], [[3rkf]] - BsGR (mutant) + guanine derivative<br /> **[[3got]] - BsGR (mutant) + adenine derivative<br /> **[[2xo1]] - BsGR aptamer domain + adenine derivative<br /> **[[3g4m]], [[3ger]] - BsGR + guanine derivative<br /> **[[2xnz]], [[6ubu]], [[6uc7]], [[6uc8]], [[6uc9]] - BsGR aptamer domain + guanine derivative<br /> **[[2xo0]] - BsGR aptamer domain + triazine derivative<br /> **[[5c7u]], [[5c7w]] - BsGR + hypoxanthine<br /> **[[2ees]], [[2eet]], [[2eeu]], [[2eev]], [[2eew]] - BsGR (mutant) + hypoxanthine<br /> **[[3gao]] - BsGR + xanthine<br /> **[[2xnw]] – BsGR + Mn<br /> **[[4fe5]], [[4fej]], [[4fel]], [[4fen]], [[4feo]], [[4fep]] – sGR + hypoxanthine – synthetic<br /> **[[6p2h]] – sGR <br /> **[[2b57]] – GR + purine derivative<br /> *Guanidine riboswitch<br /> **[[5nwq]], [[5ny8]], [[5nz3]], [[5nz6]], [[5o62]] – TfGNR + guanidine derivative – ''Thermobifida fusca''<br /> **[[5o69]] – TfGNR + agmatine <br /> **[[5nzd]] – TfGNR + CDP derivative<br /> **[[7mlw]] – GNR + guanidine – ''Burkholderia''<br /> **[[6hbt]], [[6hbx]], [[6hc5]] – GNR + guanidine II + inhibitor – ''Gloeobacter violaceus''<br /> **[[5t83]] – GNR + guanidine – ''Sulfobacillus acidophilus'' <br /> **[[5ndh]], [[5ndi]], [[5nef]], [[5neo]], [[5nep]], [[5neq]], [[5nex]], [[5nom]] – GNR + guanidine derivative – ''Gloeobacter violaceus'' <br /> **[[5vj9]], [[5vjb]] – GNR + guanidine – ''Pseudomonas aeruginosa'' <br /> *Xanthine riboswitch<br /> **[[7elp]], [[7elq]], [[7elr]], [[7els]] – XR + xanthine derivative – ''Ideonella''<br /> *Thiamine pyrophosphate riboswitch<br /> **[[2gdi]] – TPPR + TPP – synthetic<br /> **[[2hoj]], [[2hok]], [[2hol]] – EcTPPR + TPP + metal ion – ''Escherichia coli''<br /> **[[2hom]], [[8f4o]]– EcTPPR + TMP<br /> **[[2hoo]], [[2hop]] – EcTPPR + TPP analog<br /> **[[4nya]], [[4nyb]], [[4nyc]], [[7tdc]] – EcTPPR + pyrimidine derivative<br /> **[[4nyd]] – EcTPPR + hypoxanthine <br /> **[[4nyg]], [[7td7]], [[7tda]], [[7tdb]] – EcTPPR + thiamine derivative<br /> **[[2cky]], [[3d2g]], [[3d2v]], [[3d2x]] - TPPR + TPP analog – ''Arabidopsis thaliana''<br /> *S-adenosylmethionine riboswitch or SAM riboswitch<br /> **[[2gis]], [[4aob]], [[4b5r]], [[4l81]] – TtSAMR + SAM – ''Thermoanaerobacter tengcongensis''<br /> **[[3iqr]], [[2ydh]], [[2ygh]] - TtSAMR (mutant) + SAM<br /> **[[3iqp]] - TtSAMR<br /> **[[2qwy]], [[3e5c]], [[3e5e]], [[3e5f]], [[3iqn]] - SAMR + SAM – synthetic<br /> **[[4kqy]] – BsSAMR + SAM<br /> **[[3v7e]] – BsSAMR + Ybxf + SAM<br /> **[[4oqu]] - SAMR + SAM - synthetic<br /> **[[6c27]] - SAMR + GTP – ''Enterococcus faecalis''<br /> **[[6ues]], [[6wlq]], [[6wlr]] - MtSAMR – ''Mycobacterium tuberculosis''<br /> **[[6uet]] - MtSAMR + SAM<br /> **[[3gx5]], [[3gx6]], [[3gx7]] - TtSAMR + SAM <br /> **[[6laz]] - BaSAMR + U1 small nuclear ribonucleoprotein + GTP + SAM analog – ''Bifidobacterium angulatum''<br /> **[[6las]], [[6lax]] - BaSAMR + U1 small nuclear ribonucleoprotein + SAM<br /> **[[6lau]] - BaSAMR + U1 small nuclear ribonucleoprotein + SAH<br /> **[[7eaf]] – CsSAMR + SAM – ''Caldanaerobacter subterraneus''<br /> * S-adenosylhomocysteine riboswitch or SAH riboswitch<br /> **[[3npn]], [[3npq]] – SAHR + SAH – ''Ralstonia solanacearum''<br /> **[[6hag]] - SAMR + SAH – ''proteobacteria'' - NMR<br /> *SAM/SAH riboswitch<br /> **[[6ymk]] – RoSAM/SAH + adenosine derivative + cytidine derivative – ''Roseobacter''<br /> **[[6ylb]], [[6ymm]] – RoSAM/SAH + SAM<br /> **[[6ymi]] – RoSAM/SAH + AMP<br /> **[[6yl5]], [[6yml]] – RoSAM/SAH + SAH<br /> **[[6ymj]] – RoSAM/SAH + adenosine<br /> *NAD+ riboswitch<br /> **[[6tb7]], [[6tf1]], [[6tf2]], [[6tf3]], [[6tfe]], [[6tfg]], [[7d7y]] – CkNADR + ATP derivative – ''Candidatus koribacter''<br /> **[[6tf0]], [[6tff]], [[6tfh]] – CkNADR + NAD<br /> **[[8gxc]], [[8hb1]], [[8hb8]], [[8i3z]] – SmNADR II + NMN<br /> **[[8gxb]], [[8hba]] – SmNADR II + NAD<br /> **[[8hb3]] – SmNADR II + NR<br /> **[[7d7w]], [[7d7x]], [[7d7z]], [[7d81]], [[7d82]] – AbNADR + NAD - ''Acidobacteriaceae bacterium''<br /> **[[7d7v]] – AbNADR + NAD + U1 small nuclear ribonucleoprotein<br /> *Lysine riboswitch<br /> **[[3d0u]] – TmKR ligand-binding domain + Lysine – ''Thermotoga maritime''<br /> **[[4erj]] – TmKR + aminocaproic acid<br /> **[[4erl]] – TmKR + Lys + Gly<br /> *FMN riboswitch<br /> **[[6wjr]], [[6wjs]] - FnFMNR – ''Fusobacterium nucleatum''<br /> **[[3f2q]], [[3f2t]], [[3f2w]], [[3f2x]], [[3f2y]], [[3f30]], [[3f4e]] – FnFMNR + FMN<br /> **[[2yie]] - FnFMNR aptamer domain + FMN<br /> **[[3f4g]], [[3f4h]] – FnFMNR + flavin derivative<br /> **[[2yif]] - FnFMNR + GTP<br /> **[[6bfb]] – FnFMNR + inhibitor<br /> *Pre-queosine riboswitch<br /> **[[3fu2]], [[3k1v]] – BsPreq1R + queosine<br /> **[[3gca]] – TtPreq1R + queosine<br /> **[[3q50]], [[3q51]] – TtPreq1R aptamer domain + queosine<br /> **[[4jf2]] – Preq1R + GTP + deaza-aminomethyl guanine – ''Lactobacillus rhamnosus''<br /> **[[6vuh]], [[6vui]] – CsPreq1 <br /> **[[6e1s]], [[6e1t]], [[6e1u]], [[6e1v]], [[6e1w]], [[7e9e]], [[7e9i]] – CsPreq1 + probe<br /> **[[6xkn]], [[6xko]] – Preq1 + GTP + guanine derivative – ''Faecalibacterium prausnitzii''<br /> **[[7rex]], [[8fb3]] – Preq1 + guanine derivative – ''Carnobacterium antarcticum''<br /> **[[2miy]] – Preq1 + guanine derivative – ''Streptococcus pneumoniae'' - NMR<br /> **[[8fza]] – EcPreq1 III <br /> **[[2l1v]] – EcPreq1 I + PreQ1 - NMR &lt;br/&gt;&lt;br/&gt;C-di-GMP riboswitch<br /> **[[3ucu]], [[3ucz]] – hGMPR + GpG <br /> **[[3ud3]], [[3ud4]] – hGMPR + GpA <br /> **[[3irw]], [[3mxh]] – VcGMPR + C-di-GMP + GTP + U1 small nuclear ribonucleoprotein – ''Vibrio cholerae''<br /> **[[3iwn]] – VcGMPR + C-di-GMP + U1 small nuclear ribonucleoprotein<br /> **[[3mum]], [[3mur]], [[3mut]] - VcGMPR (mutant) + C-di-GMP + U1 small nuclear ribonucleoprotein<br /> **[[3muv]] - VcGMPR (mutant) + C-di-AMP + U1 small nuclear ribonucleoprotein<br /> **[[3q3z]] - GMPR + C-di-GMP – ''Clostridium acetobutylicum''<br /> **[[4qk8]], [[4qka]] – GMPR + GTP – ''Thermoanaerobacter pseudethanolicus''<br /> **[[4qk9]] – GMPR + guanosine derivative – ''Thermovirga lienii''<br /> *Glycine riboswitch<br /> **[[6wlt]], [[6wlu]] – VcGlyR<br /> **[[3owi]], [[3oww]], [[3owz]] – VcGlyR + glycine<br /> **[[3ox0]], [[3oxe]], [[3oxj]], [[3oxm]] – VcGlyR + GDP + cytidine cyclic phosphate<br /> **[[3oxb]], [[3oxd]] – VcGlyR (mutant) + GDP + cytidine cyclic phosphate<br /> **[[6wll]], [[6wlm]] – FnGlyR<br /> **[[3p49]] – FnGlyR + U1 small nuclear ribonucleoprotein + glycine<br /> *Glutamine riboswitch<br /> **[[6qn3]] – GlnR II + Gln – ''Prochlorococcus''<br /> *M-Box riboswitch<br /> **[[3pdr]] – BsMBR + Mn<br /> *T-Box riboswitch<br /> **[[4lck]] – sTBR + tRNA-Gly + ribosomal protein YBXF – synthetic<br /> **[[4mgn]] – sTBR + tRNA-Gly <br /> **[[6ufm]] – TBR + tRNA – ''Mycolicibacterium smegmatis''<br /> **[[6ufg]], [[6ufh]] – MtTBR + tRNA <br /> **[[6pom]] – BsTBR + tRNA-Gly – Cryo EM<br /> *Tetrahydrofolate riboswitch<br /> **[[3suh]], [[3sux]] – EsTHFR + THF derivative – Eubacterium siraeum<br /> **[[3suy]] - EsTHFR + cytidine cyclic phosphate<br /> **[[4lvv]], [[4lvx]], [[4lvw]], [[4lvy]], [[4lvz]], [[4lw0]] – THFR + purine derivative – synthetic<br /> **[[3sd3]] – THFR (mutant) + pteridine derivative – synthetic <br /> **[[1qa4]], [[1qa5]] – NEF anchor domain – NMR<br /> **[[7kd1]] – SmTHFR – Streptococcus mutans<br /> **[[6q57]] – SmTHFR + pterin derivative <br /> **[[7wia]], [[7wib]] – MlTHFR – ''Mesorhizobium loti'' <br /> **[[7wie]] – MlTHFR + 7DG<br /> **[[7wii]] – MlTHFR + NPR<br /> **[[7wif]] – MlTHFR + H4B&lt;br/&gt;&lt;br/&gt; &lt;br/&gt;Fluoride riboswitch<br /> * [[3vrs]] – TpFR + Mn + K + F – ''Thermotoga petrophila''<br /> * [[4en5]] – TpFR + Mg + Tl + F <br /> * [[4enc]] – TpFR + Mg + K + F <br /> * [[4ena]] – TpFR + Mg + Cs + GTP + F <br /> * [[4enb]] – TpFR + Mg + Ir + K + GTP + F <br /> *Manganese riboswitch<br /> **[[6n2v]] – MnR + Mn – ''Xanthomonas oryzae''<br /> *Cobalamine riboswitch<br /> * [[4frg]], [[4frn]], [[4gma]], [[4gxy]] – CoR + aptamer domain – Marine metagenome<br /> **[[6vmy]], [[8fw4]] – BsCoR <br /> **[[8sa2]], [[8sa3]], [[8sa4]], [[8sa5]], [[8sa6]] – BsCoR – Cryo EM<br /> *YdaO riboswitch<br /> **[[6n5k]], [[6n5n]], [[6n5o]], [[6n5p]], [[6n5q]], [[6n5s]], [[6n5t]], [[6wtl]], [[6wtr]] – hYdaO/mRNA <br /> * yybp-ykoy riboswitch<br /> **[[4y1i]] – LlYYR + Mn – ''Lactobacillus lactis''<br /> **[[4y1j]] – LlYYR (mutant) + Mn<br /> **[[6cb3]], [[6cc1]], [[6cc3]] – LlYYR + GTP<br /> **[[4y1m]] – EcYYR <br /> * PRPP riboswitch<br /> **[[6dnr]] – SlPRPPR + GTP + cytidine phosphate – ''Syntrophothermus lipocalidus''<br /> **[[6dlq]], [[6dls]], [[6dlt]] – SlPRPPR + GTP + cytidine phosphate + PRP<br /> **[[6dlr]] – SlPRPPR + cytidine phosphate + PRP<br /> **[[6ck5]] – TmPRPPR + PRPP – ''Thermoanaerobacter mathranii''<br /> **[[6ck4]] – TmPRPPR (mutant) + G4P<br /> * PPGPP riboswitch<br /> **[[6dme]], [[6dmd]], [[6dmc]] – SaPPGPPR + GTP + cytidine phosphate + guanine tetraphosphate – ''Sulfobacillus acidophilus''<br /> *PFI riboswitch<br /> **[[4znp]] – PFIR + AICAR – synthetic<br /> *NiCo riboswitch<br /> **[[4rum]] – NiCoR + Co – synthetic<br /> *ZMP riboswitch<br /> **[[4xw7]], [[4xwf]] – ZMPR + AICAR – ''Actinomyces odontolyticus'' <br /> *ZTP riboswitch<br /> **[[6od9]] – FuZTP – ''Fusobacterium ulcerans''<br /> **[[6wzr]], [[6wzs]] – FuZTP + pyridine derivative<br /> **[[5btp]] – FuZTPR + AICAR <br /> *Deoxyguanosine riboswitch<br /> **[[3sk4]], [[3ski]], [[3skl]], [[3skt]], [[3skz]], [[3slm]], [[3slq]] – DgR + guanosine derivative<br /> *ThiM riboswitch<br /> **[[7tzr]], [[7tzs]], [[7tzt]], [[7tzu]] – EcThR + quinoxaline derivative <br /> **[[3k0j]] – EcThR + thiamine pyrophosphate <br /> <br /> }}<br /> <br /> [[Category: Topic Page]]</div>

Openfox https://proteopedia.org/index.php?title=Transcriptional_activator_3D_structures&diff=4433732 2026-03-29T15:43:15Z

<p>Openfox: Normalize &lt;br/&gt; usage in #tree blocks</p> <hr /> <div>== 3D Structures of transcriptional activator==<br /> <br /> Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}} - For a general description of the protein see [[Transcriptional activator]]<br /> {{#tree:id=OrganizedByTopic|openlevels=0|<br /> *Gcn4 TA See [[Gcn4]]<br /> *Gcn5 TA<br /> **[[1e6i]] – yTA brododomain + histone H4 peptide - yeast<br /> **[[1ygh]] – yTA histone acetyltransferase domain <br /> *C-Myb TA; domains – DBD ; DBD repeat 1 38-89; repeat 2 90-141; repeat 3 142-193; transcription activation 291-315<br /> **[[1mse]], [[1msf]] – mTA DBD 90-193 + DNA – NMR - mouse<br /> **[[1mbe]], [[1mbf]] – mTA DBD repeat 1 + DNA - NMR<br /> **[[1mbg]], [[1mbh]] – mTA DBD repeat 2 + DNA - NMR<br /> **[[1mbj]], [[1mbk]] – mTA DBD repeat 3 + DNA - NMR<br /> **[[1h88]] – mTA DBD + DNA + CCAAT/enhancer binding protein β<br /> **[[1h89]] – mTA DBD + DNA + CAAT/enhancer binding protein β<br /> **[[1guu]] – mTA DBD repeat 1 <br /> **[[1gv2]] – mTA DBD repeat 2,3 <br /> **[[1gv5]] – mTA DBD repeat 2 <br /> **[[1gvd]] – mTA DBD repeat 2 (mutant) <br /> **[[1idy]], [[1idz]] – mTA DBD repeat 3 (mutant) - NMR<br /> **[[1sb0]], [[2agh]] – mTA transcription activation domain + CREB-binding protein - NMR<br /> **[[6dmx]], [[6dnq]] – mTA transcription activation domain + CREB-binding protein p3ptide + Bzip factor <br /> *Psp operon TA<br /> **[[2bjw]] – EcTA AAA domain –'' Escherichia coli''<br /> **[[4qnr]] – EcTA AAA domain (mutant) + ATP<br /> **[[4qos]] – EcTA AAA domain (mutant) + ADP<br /> **[[2c98]] – EcTA AAA domain + ADP<br /> **[[2c99]] – EcTA AAA domain + AMPPNP<br /> **[[2vii]] – EcTA AAA domain + AMP + Mg<br /> **[[5nss]] – EcTA in RNA polymerase complex – Cryo EM<br /> *TenA TA<br /> **[[1tyh]], [[1yaf]] – BsTA – ''Bacillus subtilis''<br /> **[[2qzc]] – TA – ''Sulfolobus solfataricus''<br /> **[[3no6]] – TA – ''Staphylococcus epidermidis''<br /> **[[1yak]] – BsTA + pyrimidine derivative<br /> **[[2qcx]] – BsTA (mutant) + pyrimidine derivative<br /> **[[1udd]] – TA – ''Pyrococcus horikishii''<br /> *LasR TA or transcriptional regulator LasR<br /> **[[6mww]] – PaTA – ''Pseudomonas aeruginosa''<br /> **[[2uv0]] – PaTA LBD residues 1-173 <br /> **[[3ix3]], [[6mvn]], [[6mvm]] – PaTA LBD + oxo-dodecanoyl-homoserine lactone<br /> **[[3ix4]], [[3ix8]], [[3jpu]], [[6d6a]], [[6d6b]], [[6d6c]], [[6d6d]], **[[6d6p]], [[6d6l]], [[6d6m]], [[6d6o]], [[6d6n]] – PaTA LBD + benzoate derivative<br /> **[[6mwl]] – PaTA + oxothiolan derivative<br /> **[[6mwh]] – PaTA + acetamide derivative<br /> **[[4ng2]] – PaTA LBD + protein<br /> **[[6mwz]] – PaTA (mutant) + peptide<br /> **[[6v7w]], [[6v7x]] – PaTA + Aqs1<br /> *CadC TA<br /> **[[3ly7]], [[3lya]] – EcTA periplasmic domain 188-512<br /> **[[3ly8]], [[3ly9]] – EcTA periplasmic domain (mutant)<br /> **[[5ju7]] – EcTA DBD 2-107<br /> *Mal-Rpel TA<br /> **[[2v51]], [[2v52]] – mTA residues 16-41 + actin <br /> **[[2yje]], [[2yjf]] – mTA Rpel domain + actin <br /> *Brg1 TA<br /> **[[5ea1]] – hTA bromodomain 1418-1536 - human<br /> **[[3uvd]] – hTA bromodomain - NMR<br /> **[[2grc]], [[3uvd]], [[5dkd]], [[6zs2]] – hTA bromodomain + inhibitor<br /> **[[6hr2]] – hTA bromodomain + ElonginB + ElonginC + pVHL<br /> **[[2i8b]] – TA C terminal – Zaire ebolavirus<br /> **[[3v7o]] – TA C terminal – Reston ebolavirus<br /> *Flagelar TA<br /> **[[1g8e]] – EcTA FlhD<br /> **[[2avu]] – EcTA FlhC+FLHD<br /> **[[5hxg]] – StTA FlhD + STM1697 <br /> *Tipa TA<br /> **[[1ny9]] – SlTA antibiotic binding domain – ''Streptomyces lividans'' - NMR<br /> **[[2mbz]], [[2mc0]] - SlTA antibiotic binding domain + thiopeptide - NMR<br /> **[[1r8d]] – BsTA <br /> *Rfah TA<br /> **[[2oug]] – EcTA <br /> **[[2lcl]] – EcTA C terminal - NMR<br /> **[[5ond]] – EcTA + DNA <br /> *SoxR TA or redox-sensitive transcriptional activator<br /> **[[2zhh]] – EcTA <br /> **[[2zhg]] – EcTA + DNA<br /> **[[6tf4]] – VcTA C terminal - ''Vibrio cholera'' - NMR<br /> *GlxR TA<br /> **[[3r6s]] – CgTA +cAMP – ''Corynebacterium glutamicum'' <br /> **[[4byy]] – CgTA <br /> *OxyR TA or hydrogen peroxide-inducible genes activator<br /> **[[3t22]], [[3ho7]], [[3uki]] – TA regulatory domain – ''Porphyromonas gingivalis'' <br /> **[[7l4s]] – TA regulatory domain – ''Shewnella oneidensis''<br /> **[[4y0m]] – PaTA regulatory domain <br /> **[[4x6g]], [[4xws]] – PaTA regulatory domain (mutant)<br /> **[[1i69]], [[1i6a]] – EcTA regulatory domain (mutant)<br /> **[[6g1d]] – CgTA regulatory domain (mutant)<br /> **[[6g1b]], [[6g4r]] – CgTA regulatory domain + H2O2<br /> **[[5x0v]] – VvTA - ''Vibrio vulnificus''<br /> **[[5b70]], [[5b7d]], [[5b7h]], [[5x0q]] – VvTA (mutant) <br /> **[[3jv9]] – NmTA – ''Neisseria meningitidis'' <br /> *PlcR TA<br /> **[[4fsc]] – BtTA - ''Bacillus thuringiensis'' <br /> **[[2qfc]] – BtTA + PapR peptide <br /> **[[3u3w]] – BtTA + DNA + PapR peptide <br /> *VirB TA or virulence regulon transcriptional activator VirB<br /> **[[3vwb]], [[3w2a]], [[3w3c]] – TA core domain + DNA – ''Shigella flexneri''<br /> *MafA TA<br /> **[[4eot]] – hTA DBD<br /> *CysB TA or Cys regulon transcriptional activator CysB<br /> **[[4gwo]], [[4gxa]], [[4lon]], [[4lp2]] – StTA C terminal – ''Salmonella typhimurium''<br /> **[[4lq2]], [[4lq5]], [[4m4g]] – StTA C terminal + acetylserine<br /> **[[1al3]] – TA cofactor binding domain – ''Klebsiella aerogenes''<br /> **[[5z50]] – PaTA regulatory domain <br /> **[[5z4y]], [[5z4z]] – PaTA NTD domain <br /> *HlyU TA<br /> **[[4k2e]], [[4ooi]] – VcTA <br /> **[[3jth]] – VvTA <br /> **[[5znx]] – VvTA + inhibitor <br /> *ToxR TA<br /> **[[6uue]], [[6utc]] – VvTA <br /> **[[7nmb]], [[7nn6]] – VcTA - NMR<br /> **[[8b4b]], [[8b4c]], [[8b4d]], [[8b4e]] – VcTA + DNA<br /> **[[8alo]] – VcTA + ToxS<br /> *LysR TA<br /> **[[5x0o]] – VvTA <br /> **[[5x0n]] – VvTA (mutant)<br /> **[[3t1b]], [[3szp]] – VcTA <br /> **[[6tpr]], [[6z07]], [[6z17]], [[6z5k]], [[6yz3]], [[7o2t]], [[7o2u]] – PaTA + antagonist<br /> **[[6yiz]], [[7nbw]] – PaTA + agonist<br /> **[[5z7h]] – SaTA <br /> **[[4pzj]] – TA – ''Eggerthella lenta''<br /> **[[3hhf]], [[3hhg]], [[4ab5]] – NmTA <br /> **[[3fzj]] – TA – ''Comamonas testosteroni''<br /> **[[1ixc]], [[1iz1]] – CnTA – ''Cupriavidus necator''<br /> **[[5xxp]], [[7d98]] – CnTA + DNA<br /> **[[1uth]], [[2y7r]], [[5ae4]] – TA – ''Burkholderia cepacia''<br /> **[[7trv]], [[7trw]] – TA LBD – ''Yersinia pestis''<br /> **[[7erp]], [[7erq]] – CsTA regulatory domain – ''Cronobacter sakazakii''<br /> **[[7fdf]] – CsTA regulatory domain (mutant) <br /> *Aft2 TA<br /> **[[4lmg]] – yTA + DNA<br /> *Mga TA<br /> **[[5way]] – SpTA – ''Streptococcus pneumoniae''<br /> *Spt7 TA<br /> **[[6t9k]], [[6t9i]] – yTA in SAGA – Cryo EM<br /> *Quorum-sensing TA or TraR<br /> **[[5l07]] – YeTA – ''Yersinia enterocolitica''<br /> **[[5l09]] – YeTA + THF derivative<br /> **[[1l3l]] – AtTA + pheromone + DNA – ''Agrobacterium tumefaciens'' <br /> **[[1h0m]] – AtTA + auto-inducer + DNA <br /> *MexT TA<br /> **[[6l33]] – PaTA regulatory domain<br /> *ComR TA<br /> **[[5juf]], [[6qer]] – StTA – ''Streptococcus thermophilus''<br /> **[[5jub]] – StTA + DNA<br /> **[[5fd4]] – TA – ''Streptococcus suis''<br /> **[[7n10]], [[7n1n]] – SmTA DBD + Prx – ''Streptococcus mutans''<br /> **[[6hu8]] – SvTA – ''Streptococcus vestibularis''<br /> **[[6hua]] – SvTA + peptide<br /> *FasR TA<br /> **[[6o6p]] – MtTA + DNA – ''Mycobacterium tuberculosis''<br /> **[[6o6o]] – MtTA + myristic acid<br /> **[[6o6n]] – MtTA + arachinoyl-CoA<br /> *ModE TA<br /> **[[1o7l]], [[1h9s]] – EcTA + Mo <br /> **[[1b9m]], [[1b9n]], [[1h9r]] – EcTA + Ni <br /> *TetR family TA<br /> **[[1z77]], [[2id6]], [[2iek]], [[1zkg]], [[4i76]], [[3ih2]], [[3ih3]], [[3ih4]] – TmTA – ''Thermotoga maritima''<br /> **[[4i6z]] – TmTA + DNA<br /> **[[1zk8]], [[2fq4]], [[4me9]] – BcTA – ''Bacillus cereus''<br /> **[[3cwr]] – TA – ''Rhodspirillum rubrum''<br /> **[[1z0x]] – EfTA – ''Enterococcus faecalis''<br /> **[[3c2b]] – AfTA – ''Agrobacterium fabrum''<br /> **[[2o7t]] – CgTA <br /> **[[2g7s]] – AtTA <br /> **[[3gzi]] – TA – ''Shewanella loihica''<br /> **[[2qib]], [[2zcx]], [[7ky1]] – ScTA – ''Streptomyces coelicolor''<br /> **[[2hyt]] – TA – ''Pectobacterium atrosepticum''<br /> **[[3cdl]] – PsTA – ''Pseudomonas syringae''<br /> **[[3kkc]] – SaTA – ''Streptococcus agalactiae''<br /> **[[3nnr]] – TA – ''Marinobacter aquaeolei''<br /> **[[3on4]] – TA – ''Legionella pneumophila''<br /> **[[3f1b]] – RjTA – ''Rhodococcus jostii''<br /> **[[3eup]] – TA – ''Cytophaga hutchinsoni''i<br /> **[[3egq]] – TA – ''Archaeoglobus fulgidus''<br /> **[[4hku]] – LmTA – Listeria monocytogenes<br /> **[[3nrg]], [[3qbm]] – TA – ''Chlotoflexus aurantiacus''<br /> **[[6nsr]] – PaTA (mutant) + DNA<br /> **[[4jkz]] – MsTA – ''Mycobacterium smegmatis''<br /> **[[6el2]] – SacTA – ''Sulfolobus acidocaldarius''<br /> **[[6en8]] – SacTA + DNA<br /> *TetR/AcrR family TA<br /> **[[2rae]] – RjTA <br /> **[[3lhq]] – StTA <br /> **[[3b81]] – CpTA – ''Clostridium acetobutylicum''<br /> **[[3dcf]] – TA – ''Thermobifida fusca''<br /> **[[3mvp]] – SmTA <br /> **[[5d18]], [[5d19]], [[6a4l]], [[6a4w]] – MtTA <br /> **[[2eh3]] – TA – ''Aquifex aeolicus''<br /> **[[3vuq]] – TtTA – ''Thermus thermophilus''<br /> **[[7eqe]] – SgTA – ''Streptococcus griseus''<br /> **[[7eqf]] – SgTA + ligand<br /> **[[5gp9]], [[5gpa]] – BhTA – ''Bacillus halodurans''<br /> **[[5gpc]] – BhTA + DNA <br /> **[[6g87]] – BdTA – ''Bradyrhizobium diazoefficiens''<br /> **[[6g8h]] – BdTA + naringenin <br /> **[[6g8g]] – BdTA + genistein <br /> *GntR family TA<br /> **[[3l5z]] – BcTA <br /> **[[3ddv]] – EfTA <br /> **[[3fms]], [[3sxy]] – TmTA <br /> **[[3c7j]] – PsTA <br /> **[[2di3]], [[2p19]] – CgTA <br /> **[[3tqn]] – TA –'' Coxiella burnetii''<br /> **[[6za0]], [[6za3]], [[7za7]] – AfTA <br /> **[[6z74]], [[6zab]] – AfTA + DNA<br /> **[[7u5q]] – TA – ''Brucella melitensis''<br /> **[[6sbs]] – SacTA <br /> **[[3h5o]] – TA – ''Chromobacterium violaceum'' <br /> **[[6az6]], [[7b5t]], [[7b5y]], [[7b5w]] – SaTA <br /> **[[7b5u]] – SaTA + diAMP <br /> **[[7oz3]] – SaTA + DNA – Cryo EM<br /> **[[4r1h]] – LmTA <br /> **[[3ihu]] – TA – ''Ralstonia eutropha'' <br /> **[[3lhe]] – TA – ''Bacillus anthracis'' <br /> **[[3f8m]] – MsTA <br /> *MarR family TA or multiple antibiotic resistance protein<br /> **[[3boq]], [[3cjn]], [[3e6m]] – RpTA - ''Ruegeria pomeryi''<br /> **[[3s2w]] – TA – ''Methanosarcina mazei'' <br /> **[[3bpv]] – TA – ''Methanobacterium thermoautotrophicum'' <br /> **[[2fbk]] – DrTA –'' Deinococcus radiodurans''<br /> **[[5dd8]] – DrTA (mutant) <br /> **[[2fa5]] – TA – ''Xanthomonas campestris''<br /> **[[3g3z]], [[5aiq]] – NmTA <br /> **[[5aip]] – NmTA + hydroxyphenylacetate <br /> **[[5e1w]] – DmTA – ''Dihalococcoides mccartyi''<br /> **[[5e1z]], [[5e1x]], [[5e20]] – DmTA + phenol derivative <br /> **[[6c28]] – RpTA + coumaroyl-CoA – ''Rhodopseudomonas palustris'' <br /> **[[3fm5]] – RjTA <br /> **[[1z91]] – BsTA <br /> **[[4b8x]] – ScTA <br /> **[[4yif]] – MtTA <br /> **[[3vb2]], [[3voe]], [[4jba]] – EcTA <br /> **[[3vod]] – EcTA (mutant)<br /> **[[5h3r]] – EcTA (mutant) + DNA<br /> **[[5eri]] – CdTA – ''Clostridium difficile''<br /> **[[7dvn]] – TA + effector –'' Paenisporosarcina''<br /> **[[3u2r]] – TA – ''Planctopirus limnophilus''<br /> **[[2rdp]] – TA – ''Bacillus stearothermophilus''<br /> *MerR family TA or mercuric resistance operon regulatory protein<br /> **[[3hh0]] – BcTA <br /> **[[3gpv]] – BtTA <br /> **[[4ua1]], [[4ua2]] – TA – ''Bacillus megaterium''<br /> **[[5crl]] – PaTA <br /> **[[5gpe]] – TA – ''Cupriavidus metallidurans''<br /> **[[3cnb]] – TA – ''Colwellia psychrerythraea'' <br /> **[[6d90]] – HiTA – ''Haemophilia influenzae''<br /> **[[5d8c]] – HiTA + DNA <br /> **[[6xl6]], [[6xla]], [[6xlk]] – EcTA + DNA – Cryo EM<br /> **[[6xl5]], [[6xl9]], [[6xlj]] – EcTA in RNP complex – Cryo EM<br /> *AsnC family TA<br /> **[[3i4p]] – AfTA <br /> **[[2cg4]] – EcTA <br /> *AraC family TA or arabinose operon regulatory protein<br /> **[[3gra]] – PpTA – ''Pseudomonas putida''<br /> **[[3cu5]] – TA – ''Lacnoclostridium phytofermentans''<br /> **[[5chh]] – PaTA <br /> **[[2ara]] – EcTA <br /> **[[1xja]] – EcTA dimerization domain (mutant)<br /> **[[2k9s]] – EcTA DBD - NMR<br /> **[[2arc]] – EcTA + arabinose<br /> **[[2aac]] – EcTA + fucose<br /> *LacI family TA<br /> **[[3kjx]], [[3e3m]] – RpTA <br /> **[[3jy6]] – TA - ''Lactobacillus brevis'' <br /> **[[6chk]] – LcTA - ''Lactobacillus casei'' <br /> **[[4rk5]], [[4rk4]] – LcTA + sugar <br /> **[[4rk0]], [[4rk1]] – EfTA + ribose<br /> **[[3h5t]] – CgTA <br /> **[[3kke]] – MsTA <br /> **[[4rkq]], [[4rkr]] – TA - ''Arthrobacter''<br /> *PadR family TA<br /> **[[5zhv]], [[5zi8]], [[5zhc]] – MtTA <br /> **[[5zqh]] – SpTA <br /> **[[5x12]], [[7cbv]] – BsTA <br /> **[[5x13]], [[5y8t]] – BsTA + coumaric acid<br /> **[[5x14]] – BsTA + ferulic acid<br /> **[[6abq]], [[6abt]] – LmTA <br /> **[[5dym]] – CdTA <br /> *TrmB TA or tRNA (guanine-N(7)-) methyltransferase<br /> **[[2f5t]] – TA – ''Thermococcus litoralis''<br /> **[[3qph]] – PfTA + sucrose – ''Pyrococcus furiosus''<br /> *IclR TA<br /> **[[1mkm]] – TmTA <br /> **[[2o99]], [[2o9a]] – EcTA C-terminal <br /> **[[1td5]] – EcTA LBD <br /> **[[7cuo]] – TA + hydroxybenzoate – ''Microbacterium hydrocarbonoxydans &lt;br/&gt;&lt;br/&gt;''<br /> *BgaR TA<br /> **[[6nwo]] – CpTA – ''Clostridium perfringens''<br /> **[[6nx3]], [[6nwj]], [[6nwm]], [[6nwh]] – CpTA + pyranose derivative<br /> *SlyA TA<br /> **[[1lj9]] – EfTA <br /> **[[3qpt]] – StTA <br /> **[[3q5f]] – StTA + DNA <br /> **[[4aih]] – YpTA – ''Yersinia pseudotuberculosis''<br /> **[[4aij]], [[4aik]] – YpTA + DNA <br /> *CouR TA<br /> **[[5cyv]], [[6c28]] – RjTA + coumaroyl-CoA –'' Rhodococcus jostii''<br /> **[[6c9t]] – RpTA <br /> **[[6c2s]] – RpTA + DNA <br /> *CueR TA<br /> **[[1q07]], [[1q06]], [[1q05]] – EcTA <br /> *LuxR TA<br /> **[[6wae]] – VvTA <br /> **[[6wai]], [[6wah]], [[6wag]], [[6waf]] – VvTA (mutant)<br /> *LuxT TA<br /> **[[3b4s]], [[3ljl]] – VpTA <br /> *ClgR TA or Clp gene regulator<br /> **[[5woq]] – MsTA <br /> **[[3f51]], [[3f52]] – CgTA <br /> *LmrR TA<br /> **[[3f8b]], [[6i8n]] – LlTA – ''Lactococcus lactis''<br /> **[[3f8c]], [[3f8f]] – LlTA + drug<br /> **[[6vwe]], [[6do0]] – LlTA + Rh complex<br /> **[[6r1l]] – LlTA + Cu + phenanthroline<br /> **[[4zzd]] – LlTA + riboflavine<br /> **[[6fuu]] – LlTA + heme<br /> *MvfR TA<br /> **[[4jvc]], [[6z17]] – PaTA <br /> **[[4jvd]], [[4jvi]], [[6q7u]], [[6q7v]], [[6tpr]], [[6yiz]], [[6yz3]], [[6z07]], **[[6z17]], [[6z5k]], [[7nbw]], [[7o2t]], [[7o2u]] – PaTA + inhibitor<br /> **[[6b8a]], [[6q7w]] – PaTA LBD 94-295 + inhibitor<br /> *HdfR TA<br /> **[[6wn5]] – TA – ''Klebsiella pneumoniae''<br /> *McbR TA<br /> **[[4p9f]] – EcTA <br /> **[[4ab5]] – MnTA <br /> **[[4ab6]] – MnTA (mutant)<br /> *MetR TA<br /> **[[5fo5]] – EcTA DBD<br /> *YvhJ TA<br /> **[[3nxh]] – BsTA <br /> *CgmR TA<br /> **[[2yve]], [[2zoy]] – CgTA <br /> **[[2zoz]] – CgTA + ethidium<br /> **[[2yvh]] – CgTA + DNA<br /> *AraR TA or arabinose metabolism transcriptional repressor<br /> **[[5bs6]], [[5dd4]] – BtTA – ''Bacterioides thetaiotaomicron''<br /> **[[3tb6]] – BtTA effector-binding domain 71-362 + arabinose<br /> **[[5ddg]] – BtTA + DNA<br /> **[[5deq]] – BtTA 1-225 + arabinose<br /> **[[4egy]], [[4egz]], [[4h0e]], [[5d4r]], [[5d4s]] – BsTA DBD 1-68 + DNA<br /> *CarH TA or light-dependent transcriptional regulator<br /> **[[5c8a]], [[5c8d]], [[5c8e]], [[5c8f]] – TtTA + cobalamin derivative<br /> *ZitR TA or zinc transport transcriptional regulator<br /> **[[5yhx]] – LlTA <br /> **[[5yhy]], [[5yhz]], [[5yi0]], [[5yi1]], [[6fi9]] – LlTA (mutant)<br /> **[[5yi2]] – LlTA + DNA<br /> **[[5yi3]] – LlTA (mutant) + DNA<br /> *LsrR TA<br /> **[[4l4y]] – EcTA <br /> **[[4l4z]], [[4l50]], [[4l51]], [[4l5i]], [[4l5j]] – EcTA + ligand<br /> *TA II<br /> **[[8igr]] – EcTA in transcription activation complex – Cryo EM<br /> *TA RAMA<br /> **[[7bef]], [[7beg]] – EcTA in transcription activation complex – Cryo EM<br /> *PrfA TA or listeriolysin positive regulatory factor A<br /> **[[1omi]], [[2beo]] – LmTA <br /> **[[2bgc]], [[6qvy]], [[6qvz]], [[6qw1]], [[6qw2]] – LmTA (mutant) <br /> **[[5lej]], [[5x6d]] – LmTA + DNA<br /> **[[5lek]], [[6qwf]], [[6qwh]], [[6qwk]], [[6qwm]] – LmTA (mutant) + DNA <br /> **[[5f1r]], [[6eut]], [[6euu]], [[6euz]], [[6ev0]], [[6exk]], [[6exl]], [[6exm]], [[6t5i]] – LmTA + inhibitor<br /> **[[5lrs]], [[5x6e]] – LmTA + DNA + glutathione<br /> **[[5lrr]] – LmTA + glutathione<br /> **[[6hck]] – LmTA + peptide<br /> *HTH-type TA or helix-turn-helix-type<br /> **[[2uxu]] – PpTA TtgR + naringenin<br /> **[[2uxh]] – PpTA TtgR + quercetin<br /> **[[2uxi]] – PpTA TtgR + phloretin<br /> **[[6ugl]], [[6kju]] – VcTA + pyrazine derivative&lt;''br /&gt;<br /> **[[2bv6]] – SaTA MgrA –'' Staphylococcus aureus<br /> **[[5hs5]], [[5ywj]], [[6k8e]] – SaTA SarX<br /> **[[3hrm]], [[3hse]] – SaTA SarZ <br /> **[[6r1p]] – MtTA EthR <br /> **[[1ysq]] – EcTA YiaJ <br /> **[[2qop]], [[3bcg]] – EcTA AcrR<br /> **[[6ldi]], [[6xh7]], [[6xh8]], [[7c17]] – EcTA CueR in transcription activation complex – Cryo EM <br /> **[[4wls]], [[4wlw]] – EcTA CueR + DNA<br /> **[[4x1e]] – EcTA RutR<br /> **[[4xk4]], [[4jyk]] – EcTA RutR + uracil derivative<br /> **[[2hxr]] – EcTA CynR LBD <br /> **[[3hfu]] – EcTA CynR LBD + N3<br /> **[[8bob]] – EcTA MalT + MalY – Cryo EM <br /> **[[2gfn]] – RjTA Rha1 <br /> **[[1i1g]] – PfTA LrpA <br /> **[[7cla]] – TA SkgA – ''Caulobacter vibrioides''<br /> **[[7bzd]] – BsTA HxlR <br /> **[[7bze]] – BsTA HxlR (mutant)<br /> **[[7bzg]] – BsTA HxlR + DNA<br /> **[[7amn]], [[7amt]] – TA LuxR + DNA – ''Vibrio alginolyticus''<br /> **[[2dtz]], [[2hq5]] – SaTA QacR (mutant)<br /> **[[3bqz]], [[3br0]], [[3btc]], [[3btl]] – SaTA QacR (mutant) + malachite green<br /> **[[3br1]], [[3br2]], [[3bt9]], [[3btj]] – SaTA QacR (mutant) + dequalinium<br /> **[[3bti]] – SaTA QacR (mutant) + berberine<br /> **[[1qvu]],[[3br3]], [[3pm1]] – SaTA QacR (mutant) + ethidium<br /> **[[1rkw]], [[1rpw]] – SaTA QacR (mutant) + pentamadine<br /> **[[1qvt]] – SaTA QacR (mutant) + proflavine<br /> **[[3br5]], [[3br6]] – SaTA QacR (mutant) + rhodamine<br /> **[[2gby]] – SaTA QacR (mutant) + berenil<br /> **[[2g0e]] – SaTA QacR (mutant) + drug<br /> **[[3k1n]] – AbTA BenM – Acinetobacter baylyi<br /> **[[3k1p]] – AbTA BenM (mutant)<br /> **[[2f6g]], [[2f6p]], [[2f97]] – AbTA BenM effector-binding domain 81-304<br /> **[[3m1e]] – AbTA BenM DBD 1-87<br /> **[[4ihs]], [[4iht]] – AbTA BenM effector-binding domain + DNA <br /> **[[2f78]], [[2f7a]], [[2f7c]] – AbTA BenM effector-binding domain + effector <br /> **[[2h9b]] – EfTA BenM (mutant)<br /> **[[2f7b]], [[2h98]] – AbTA CatM effector-binding domain <br /> **[[3glb]] – AbTA CatM effector-binding domain (mutant)<br /> **[[2f7c]] – AbTA CatM effector-binding domain + muconate<br /> **[[2cfx]] – BsTA LrpC<br /> **[[2gqq]] – EcTA LrpC<br /> **[[6d2s]], [[6cyj]], [[6cz6]], [[6cyy]] – MtTA PrpR<br /> **[[2pju]] – EcTA PrpR<br /> **[[5t4k]], [[5t4j]], [[5t4l]], [[5x03]] – BsTA GabR EBO domain + pyridine derivative<br /> **[[4mgr]], [[4nob]], [[4tv7]] – BsTA GabR <br /> **[[6uxz]] – BsTA GabR + agonist<br /> **[[5u9e]], [[5u93]] – TA RhaR regulatory domain – ''Bacteria latreille''<br /> **[[5z49]] – TA CmpR effector-binding domain + ribulose bisphosphate – ''Synechococcus elongatus''<br /> **[[3kos]] – CfTA AmpR effector binding domain – ''Citrobacter freundii''<br /> **[[3kot]] – CfTA AmpR effector binding domain (mutant)<br /> **[[4wkm]] – CfTA AmpR effector binding domain + peptide<br /> **[[5mmh]] – PaTA AmpR effector binding domain &lt;br/&gt;<br /> <br /> }}<br /> <br /> [[Category:Topic Page]]</div>

Openfox https://proteopedia.org/index.php?title=Transcription_initiation_factors_3D_structures&diff=4433731 2026-03-29T15:43:15Z

<p>Openfox: Normalize &lt;br/&gt; usage in #tree blocks</p> <hr /> <div>==3D structures of transcription initiation factors==<br /> <br /> Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}} - For a general description of the protein see [[Transcription initiation factor]]<br /> {{#tree:id=OrganizedByTopic|openlevels=0|<br /> *TFIIA<br /> **[[5m4s]] – hTFIIA – human<br /> **[[1nvp]] – hTFIIA + TBP + DNA <br /> **[[6mzm]] – hTFIIA+TFIID + TBP + DNA – Cryo EM<br /> **[[1nh2]], [[1rm1]], [[1ytf]] – yTFIIA + TBP + DNA – yeast<br /> **[[7oh9]], [[7oha]] – yTFIIA in nucleosome complex - CryoEM<br /> **[[5fur]] – yTFIIA + yTFIIF + TBP + DNA - CryoEM<br /> *TFIIB<br /> **[[1tfb]] – hTFIIB – NMR<br /> **[[1dl6]] - hTFIIB N terminal – NMR<br /> **[[5wh1]] - hTFIIB C terminal <br /> **[[1rly]] - hTFIIB Zn ribbon domain + Zn – NMR<br /> **[[1ro4]] - hTFIIB Zn ribbon domain – NMR<br /> **[[1c9b]], [[1vol]]  – hTFIIB + TBP + DNA<br /> **[[1ais]], [[1d3u]] - TFIIB C terminal + TBP + DNA – ''Pyrococcus woesei''<br /> **[[1pft]] – PfTFIIB N terminal – ''Pyrococcus furiosus'' – NMR<br /> **[[5o9i]], [[5o9j]] - TFIIB – ''Methanocaldococcus jannaschii'' <br /> *TFIIA+TFIIB<br /> **[[6o9l]] – hTFIIA+TFIIB in RNA polymerase II – Cryo EM<br /> **[[7zwc]] – hTFIIA+TFIIB + SNAPc:TBP – Cryo EM<br /> *TFIIIB<br /> **[[5n9g]] – hTFIIIB + TBP + DNA<br /> **[[6f40]], [[6f41]], [[6f42]], [[6f44]], [[6cnb]], [[6cnc]], [[6cnd]], [[6cnf]], [[6eu0]] – yTFIIIB + RNA polymerase III – Cryo EM<br /> **[[7q5b]] – yTFIIIB in TY3 retrotransposon complex – Cryo EM<br /> *TFIID<br /> **[[1bh8]] – hTFIID<br /> **[[1eqf]], [[7k3o]] – hTFIID subunit 1<br /> **[[6fic]], [[7jjg]], [[7jjh]], [[7jsp]], [[7jtc]], [[7k03]], [[7k0d]], [[7k0u]], [[7k1p]], [[7k27]], [[7k42]], [[7k6f]], [[7l6x]], [[7lb0]], [[7lb1]], [[7lb2]], [[7lb3]], [[7n42]], [[7p4s]], [[7t2i]], [[7t36]] – hTFIID subunit 1 + inhibitor<br /> **[[3uv5]] – hTFIID subunit 1 bromodomain 1-2<br /> **[[3uv4]] – hTFIID subunit 1 bromodomain 2 1501-1635<br /> **[[5mg2]], [[6bqd]], [[6p38]], [[6p39]], [[6p3a]] – hTFIID subunit 1 bromodomain 2 + inhibitor <br /> **[[3aad]] – hTFIID subunit 1 bromodomain 1-2 + histone chaperone ASF1A<br /> **[[4yym]], [[4yyn]] – hTFIID subunit 1 bromodomain 2 + histone peptide<br /> **[[5i1q]], [[5i29]] – hTFIID subunit 1 bromodomain 2 + pyrrolopyridone<br /> **[[5c13]], [[5wxg]], [[5wxh]], [[5xmy]] – hTFIID subunit 3 PHD finger 853-915 + histone peptide<br /> **[[5eg2]] - hTFIID subunit 10 + SETD7 + SAH<br /> **[[4wv4]] - hTFIID subunits 8+10 <br /> **[[4grw]] - hTFIID subunits 1+7 <br /> **[[6f3t]] - hTFIID subunits 5+6+9 <br /> **[[6mzl]], [[7eg9]], [[7egb]], [[7egc]], [[7ege]], [[7ena]], [[7enc]] - hTFIID subunits 1-13 + TBP – Cryo EM<br /> **[[6mzd]], [[7egf]] - hTFIID subunits 1,3-6,9-13 + TBP – Cryo EM<br /> **[[6mzc]], [[7egg]] - hTFIID subunits 2,4-6,8-12 – Cryo EM<br /> **[[7egh]] - hTFIID subunits 1,2,6-8 + DNA – Cryo EM<br /> **[[7ktr]], [[7kts]], [[8h7g]] - hTFIID in SAGA coactivator complex – Cryo EM<br /> **[[1bh9]] – hTFIID + PCMBS<br /> **[[6df4]], [[6df7]] – TFIID subunit 1 bromodomain 2 + inhibitor - rabbit<br /> **[[1tba]] – TFIID – ''Drosophila melanogaster'' - NMR<br /> **[[1qn3]], [[1qn4]], [[1qn5]], [[1qn6]], [[1qn7]], [[1qn8]], [[1qn9]], [[1qna]], [[1qnb]], [[1qnc]], [[1qne]] – AtTFIID + DNA &lt;br/&gt;''Arabidopsis thaliana''<br /> **[[7ac1]] - AtTFIID subunit 4 RST domain - NMR<br /> **[[4oy2]] - yTFIID subunits 1+7 <br /> **[[6mip]] - yTFIID subunit 14 <br /> **[[6lqz]] - yTFIID subunit 14 + STH1EBMC - NMR<br /> **[[5d7e]], [[5iok]], [[6min]], [[6mio]], [[6miq]], [[7f4a]] – yTFIID subunit 14 YEATS domain 1-137 + histone peptide<br /> **[[7uhe]] – yTFIID subunit 14 ET domain 168-243 + C-terminal domain 1392-1403<br /> **[[6t9j]] - yTFIID subunit 12 + Spt20 + transcription-associated protein – Cryo EM <br /> **[[6t9i]], [[6t9k]] - yTFIID in SAGA complex – Cryo EM <br /> **[[6hqa]], [[6tb4]], [[6tbm]] - TFIID in SAGA complex –'' Komagataella phaffii'' – Cryo EM <br /> *TFIID+TFIIA<br /> **[[7egd]], [[7egi]], [[7egj]] – hTFIID+TFIIA + TBP + DNA – Cryo EM<br /> *TFIIE<br /> **[[7nvw]], [[7nvx]] – hTFIIE + TFIIH + Mat1 + DNA – Cryo EM<br /> **[[5gpy]] - hTFIIE subunit 1 1-217 + subunit 2 141-217<br /> **[[1vd4]] - hTFIIE Zn finger domain 113-174 – NMR<br /> **[[2rnq]] – hTFIIE C terminal 378-439 - NMR<br /> **[[2rnr]] – hTFIIE C terminal + TFIIH PH domain- NMR<br /> **[[6pin]], [[6xjf]] – PfTFIIE-a <br /> *TFIIF<br /> **[[1f3u]] – hTFIIF<br /> **[[1nha]] – hTFIIF C terminal - NMR<br /> **[[1i27]] – hTFIIF C terminal (mutant)<br /> **[[1j2x]] – hTFIIF C terminal + RNA polymerase CTD phosphatase peptide<br /> **[[1onv]] – hTFIIF C terminal + serine phosphatase peptide - NMR<br /> **[[2k7l]] – hTFIIF C terminal + FCP1 peptide - NMR<br /> **[[7mei]], [[7mk9]] – yTFIIH in trailing EC complex – Cryo EM<br /> * TFIIH<br /> **[[5ivw]], [[6o9m]], [[7o4k]], [[7o4l]] – hTFIIH in preinitiation complex – Cryo EM<br /> *TF in RNA polymerase II<br /> **[[5iy6]], [[5iy7]], [[5iy8]], [[5iy9]], [[5iya]], [[5iyb]], [[5iyc]], [[5iyd]] – hTFIIA + hTFIIB + hTFIIE + hTFIIF + hTFIIH + DNA – Cryo EM<br /> **[[7edx]], [[7eg7]], [[7eg8]], [[7eg9]], [[7ega]], [[7nvv]], [[7nvy]], [[7nvz]], [[7nw0]] – hTFII in RNA polymerase – Cryo EM<br /> **[[8wb0]] – hTFIIF + in RNA polymerase II transcription pre-initiation complex - CryoEM<br /> **[[8iue]], [[8iuh]] – hTFIID + in RNA polymerase III pre-initiation complex - CryoEM<br /> **[[7nvr]], [[7nvs]], [[7nvt]], [[7nvu]] – hTFIIA + TFIIB + TFIIE + TFIIF + in mediator with RNA polymerase II transcription pre-initiation complex - CryoEM<br /> **[[5fyw]] – yTFIIA + yTFIIE + yTFIIF + DNA <br /> **[[5fz5]], [[6gyl]], [[6gym]] – yTFIIA + yTFIIE + yTFIIF + DNA – Cryo EM<br /> **[[6gyk]] – yTFIIA + yTFIIB + yTFIIF + DNA – Cryo EM<br /> **[[5sva]] – yTFIIA + yTFIIB + yTFIIE + yTFIIF + DNA – Cryo EM<br /> **[[4v1n]], [[4v1o]] – yTFIIB + yTFIIF – Cryo EM<br /> **[[7ml0]], [[7ml2]], [[7ml4]] - yTFIIB + TFIIE + TFIIF + in RNA polymerase II pre-initiation complex - CryoEM<br /> **[[3k1f]], [[3k7a]], [[4bbr]], [[4bbs]] – yTFIIB in RNA polymerase complex<br /> **[[7o72]] – yTFIIB in RNA polymerase II transcription pre-initiation complex - CryoEM<br /> **[[7o73]] – yTFIIA + TFIIE + TFIIF + in RNA polymerase II transcription pre-initiation complex - CryoEM<br /> **[[7o4i]], [[7o4j]], [[7o75]] – yTFIIA + TFIIB + TFIIE + TFIIF + in RNA polymerase II transcription pre-initiation complex - CryoEM<br /> **[[7zs9]], [[7zsa]], [[7zsb]], [[8bz1]] – yTFIIA + TFIIB + TFIID + TFIIE + TFIIF + nucleosome in RNA polymerase II transcription pre-initiation complex - CryoEM<br /> **[[5fmf]], [[5oqj]], [[5oqm]] – yTFIIA + yTFIIB + yTFIIE + yTFIIF + yTFIIH + DNA – Cryo EM<br /> **[[6kf4]], [[6kf9]] – TFIIF – ''Thermococcus kodakarensis'' - Cryo EM<br /> *TF RRN or RNA polymerase I-specific transcription initiation factor RRN<br /> **[[7oba]] – hTF RRN3 in RNA polymerase I – Cryo EM<br /> **[[3tj1]] – yTF RRN3 <br /> **[[5g5l]] – yTF RRN3 in RNA polymerase I<br /> **[[6rqt]], [[6rrd]] – yTF RRN3 in RNA polymerase I – Cryo EM<br /> **[[6ruo]] – yTF RRN3+RRN6+RRN11 in RNA polymerase I – Cryo EM<br /> **[[5o7x]] – yTF RRN6+RRN7+RRN11 <br /> **[[5oa1]], [[5w5y]], [[5w64]], [[5w65]], [[5w66]] – yTF RRN6+RRN7+RRN11 in RNA polymerase I – Cryo EM<br /> **[[5n5y]], [[5n5z]], [[5n60]], [[5n61]], [[6rqh]], [[6rql]], [[6rui]], [[6rwe]] – yTF RRN3+RRN6+RRN7+RRN11 in RNA polymerase I – Cryo EM<br /> **[[7z0o]] – yTF RRN5+RRN9+RRN10 in RNA polymerase I – Cryo EM&lt;br/&gt;<br /> <br /> }}<br /> <br /> [[Category:Topic Page]]</div>

Openfox https://proteopedia.org/index.php?title=Sigma_factor_3D_structures&diff=4433730 2026-03-29T15:43:14Z

<p>Openfox: Normalize &lt;br/&gt; usage in #tree blocks</p> <hr /> <div>==3D structures of sigma factor==<br /> <br /> Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}<br /> {{#tree:id=OrganizedByTopic|openlevels=0|<br /> *Sigma factor<br /> **[[1ku2]] – TaSF-A region 1.2-3.1 – ''Thermus aquaticus''<br /> **[[1ku3]] – TaSF-A region 4 (mutant)<br /> **[[3les]] – TaSF-A residues 93-271<br /> **[[1sig]] – EcSF-70 – ''Escherichia coli''<br /> **[[2mao]] – EcSF-E region 2 - NMR<br /> **[[6fi7]] – EcSF-38 - NMR<br /> **[[1tty]] – TmSF-70 region 4 – ''Thermotoga maritima''<br /> **[[2k6x]] – TmSF-70 region 1.1 (mutant) - NMR<br /> **[[2ahq]] – AaSF-54 C terminal – ''Aquifex aeolicus'' - NMR<br /> **[[2k9l]], [[2k9m]] – AaSF-54 core domain - NMR<br /> **[[3mzy]] – SFH – ''Fusobacterium nucleatum''<br /> **[[1h3l]] – ScSF N terminal – ''Streptomyces coelicolor''<br /> **[[5fgm]] – ScSF-R region 4<br /> **[[7qh5]] – SF-G1 – ''Streptomyces tsukubensis''<br /> **[[5mww]] – BsSF-A region 1.1 - ''Bacillus subtilis'' - NMR <br /> **[[8b3z]] – BsSF-E N terminal <br /> **[[5xe7]] – MtSF-J – ''Mycobacterium tuberculosis''<br /> *Sigma factor complex with DNA<br /> **[[3ugo]], [[3ugp]] - TaSF-A region 2 + DNA<br /> **[[1ku7]] – TaSF-A region 4 (mutant) + DNA <br /> **[[4ki2]] - TaSF-A region 2-3 + DNA<br /> **[[2h27]] – EcSF-E region 4 + DNA<br /> **[[2map]] – EcSF-E region 2 + DNA - NMR<br /> **[[2o8k]], [[2o9l]] – AaSF-54 C terminal + DNA - NMR<br /> **[[5ui5]] – AaSF-54 residues 61-398 + DNA <br /> **[[6jhe]] – BsSF-W region 4 + DNA <br /> *Sigma factor complex with anti-sigma factor<br /> **[[1tlh]] – EcSF-70 region 4 + anti-σ factor<br /> **[[1rp3]], [[1sc5]] – AaSF-28 + anti-σ factor FLGM <br /> **[[6ivu]] – CtSF-1 + anti-σ factor – ''Clostridium thermocellum''<br /> **[[5wur]] – BsSF-W + anti-σ factor <br /> **[[5uxx]] – SF + anti-σ factor – ''Bartonella quintana''<br /> **[[4nqw]] – MtSF-K region 4 + anti-σ factor<br /> *Sigma factor complex with protein<br /> **[[3lev]] – TaSF-A residues 93-271 + antibody<br /> **[[1l9u]] – TaSF-A region 1.1-4 + RNAP subunits α,β,β’,ω<br /> **[[1or7]] – EcSF-E + σ-E factor negative regulatory protein <br /> **[[4lup]] – EcSF-E residues 3-92 + EcSF region 2 <br /> **[[2p7v]] – EcSF-70 region 4 + regulator of σ D<br /> **[[4yg2]], [[5uag]], [[5uaj]], [[5uaq]] – EcSF-70 + RNAP subunits α,β,β’,ω <br /> **[[5ui8]] – EcSF-45 + RNAP subunits α,β,β’,ω <br /> **[[6byu]] – EcSF-70 + RNAP subunits α,β,β’,ω + ppApp <br /> **[[4mey]], [[4ljz]], [[4lk1]], [[6cux]] – EcSF-70 + RNAP subunits α,β,β’,ω <br /> **[[6c9y]], [[6ca0]] – EcSF-70 + RNAP subunits α,β,β’,ω - Cryo EM<br /> **[[5nwt]] – EcSF-54 + RNAP subunits α,β,β’,ω <br /> **[[5w1s]] – EcSF-70 + RNAP subunits α,β,β’ + TraR<br /> **[[5vsw]] – EcSF-70 + RNAP subunits α,β,β’ + DnaK suppressor protein<br /> **[[5w1t]] – EcSF-70 + RNAP subunits α,β,β’ + RpoZ + DnaK suppressor protein<br /> **[[4lk0]], [[4llg]], [[4yfk]], [[4yfn]], [[4yfx]], [[4zh2]] – EcSF-70 + EcRNAP subunits α,β,β’,ω + RNAP inhibitor<br /> **[[3hug]] – MtSF-L + membrane protein <br /> **[[4x8k]] – MtSF-A region 2 + RBPA<br /> **[[6onu]], [[6ono]] – MtSF-A region 4 + WHIB1<br /> **[[5zx3]] – MtSF-H + RNAP subunits α,β,β’,ω <br /> **[[6fbv]] – MtSF-A + RNAP subunits α,β,β’,ω - Cryo EM<br /> **[[7pp4]], [[7q4u]], [[7q59]], [[7zf2]] – MtSF-B + RNAP subunits α,β,β’,ω - Cryo EM<br /> **[[6c05]], [[6c06]] – MtSF-A + RNAP subunits α,β,β’,ω + RbpA - Cryo EM<br /> **[[3wod]], [[2a6e]], [[2cw0]], [[5tmf]] – TtSF-A + RNAP subunits α,β,β’,ω - ''Thermus thermophilus'' <br /> **[[2be5]] – TtSF-70 + RNAP subunits α,β,β’,ω + inhibitor<br /> **[[6pfj]], [[6pfv]] – ScSF (mutant) + AMFC protein<br /> **[[5tmc]] – TtSF-A + RNAP subunits α,β,β’,ω + protein + G4P<br /> **[[5xj0]] – TtSF-A + RNAP subunits α,β,β’,ω + GP39 + GP76<br /> **[[5x22]] – TtSF-A + RNAP subunits α,β,β’,ω + GpA + CMPcPP<br /> **[[4lk0]], [[4llg]], [[4yfk]], [[4yfn]], [[4yfx]], [[4zh2]] – EcSF7-0 + EcRNAP subunits α,β,β’,ω + RNAP inhibitor<br /> **[[4cxf]] – SF CNRH + CNRY – ''Cupriavidus metallidurans''<br /> **[[4g6d]], [[4g8x]], [[4g94]] – SF-70 region 4 + Orf067 – ''Staphylococcus aureus''<br /> **[[5yix]] – CcSF-70 + GcrA - ''Caulobacter crescentus''<br /> **[[6in7]] – PaSF-H + ALGU – ''Pseudomonas aeruginosa''<br /> **[[6eyd]] – MsSF-A + RNAP subunits α,β,β’,ω - ''Mycobacterium smegmatis'' – Cryo EM <br /> **[[6dxo]] – SvSF-A + BLDN – ''Streptomyces venezuelae''<br /> **[[7vf9]] – PaSF-38 + RNAP subunits α,β,β’,ω - Cryo EM<br /> *E. coli sigma factor-70 complex with protein, DNA and RNA<br /> **[[6p1k]], [[7khb]] – EcSF-70 + EcRNAP subunits α,β,β’,ω - Cryo EM<br /> **[[6vjs]] – EcSF-70 + EcRNAP subunits α,β,β’,ω <br /> **[[3iyd]] – EcSF-70 in transcription initiation complex + catabolite gene activator<br /> **[[4jk1]], [[4jk2]], [[4jkr]] – EcSF-70 + EcRNAP subunits α,β,β’,ω + G4P<br /> **[[7khe]], [[7khi]] – EcSF-70 + EcRNAP subunits α,β,β’,ω + G4P – Cryo EM<br /> **[[7khc]] – EcSF-70 + EcRNAP subunits α,β,β’,ω + POP – Cryo EM<br /> **[[4yln]], [[4ylo]], [[4ylp]], [[6n62]], [[6utv]], [[6utw]], [[6utx]] [[6uty]], [[6utz]], [[6uu0]], [[6uu1]], [[6uuc]] [[6uu3]], [[6uu4]], [[6uu5]], [[6uu6]], [[6uu7]], [[6uu8]], [[6uu2]], [[6uua]], [[6uuc]] – EcSF-70 in transcription initiation complex<br /> **[[6b6h]], [[6xl5]], [[6xl9]], [[6xlj]], [[6xll]], [[7vwy]], [[8igr]], [[8igs]] – EcSF-70 in transcription activation complex - Cryo EM<br /> **[[5nss]] – EcSF-54 + EcRNAP subunits α,β,β’,ω + phage shock protein F + DNA - Cryo EM<br /> **[[5nsr]], [[6gh6]], [[6gh5]], [[6gfw]], [[7szk]] – EcSF-54 + EcRNAP subunits α,β,β’,ω + DNA - Cryo EM<br /> **[[7bef]], [[7beg]], [[7chw]], [[7mkd]], [[7mke]], [[7mki]], [[7mkj]] – EcSF-70 + EcRNAP subunits α,β,β’,ω + DNA - Cryo EM<br /> **[[6n61]] – EcSF-70 + EcRNAP subunits α,β,β’,ω + capistruin + DNA<br /> **[[6n60]] – EcSF-70 + EcRNAP subunits α,β,β’,ω + microcin + DNA<br /> **[[6p18]] – EcSF-70 in transcription antitermination complex + protein Q<br /> **[[6jnx]], [[7ubm]] – EcSF-70 in transcription antitermination complex + protein Q – Cryo EM<br /> **[[7ubn]] – EcSF-70 in transcription antitermination complex + NusA – Cryo EM<br /> **[[6jbq]] – EcSF-E in transcription initiation complex – Cryo EM<br /> **[[5vt0]] – EcSF-70 + EcRNAP subunits α,β,β’,ω + RNA – Cryo EM<br /> **[[6k4y]] – EcSF-70 + EcRNAP subunits α,β,β’,ω + anti-SF + MOTA + DNA – Cryo EM<br /> **[[6ldi]], [[6xh7]], [[6xh8]], [[7c17]] – EcSF-70 in transcription activation complex + CueR – Cryo EM<br /> **[[6pb4]], [[6pb5]], [[6pb6]] – EcSF-70 in transcription activation complex + Crp – Cryo EM<br /> **[[7vwz]] – EcSF-70 in transcription activation complex + right origin-binding protein – Cryo EM<br /> **[[7w5w]], [[7w5x]], [[7w5y]] – EcSF-70 in transcription activation complex + SoxS – Cryo EM<br /> **[[8jo2]] – EcSF-70 in transcription activation complex + BasR – Cryo EM<br /> **[[6n57]], [[6n58]] – EcSF-70 in transcription initiation complex + Tsar – Cryo EM<br /> **[[6psq]], [[6psr]], [[6pss]], [[6pst]], [[6psu]], [[6psv]], [[6psw]] – EcSF-70 in transcription initiation complex + Trar – Cryo EM<br /> **[[6n4c]], [[6oul]] – EcSF-70 in transcription initiation complex – Cryo EM<br /> **[[7khe]] – EcSF-70 in transcription initiation complex + GTP – Cryo EM<br /> **[[7chw]], [[7khb]] – EcSF-70 in transcription open promoter complex – Cryo EM<br /> **[[6wmu]], [[7c97]], [[7dy6]] – EcSF-70 in transcription open promoter complex + SspA – Cryo EM<br /> **[[7khi]] – EcSF-70 in transcription open promoter complex + DKSA + G4P – Cryo EM<br /> **[[7khc]] – EcSF-70 in transcription closed promoter complex – Cryo EM<br /> **[[6xlm]], [[7n4e]], [[7xui]] – EcSF-70 in elongation complex – Cryo EM<br /> *Other sigma factor complex with protein, DNA and RNA<br /> **[[4oio]], [[4g7h]], [[4g7o]], [[4g7z]], [[4q4z]], [[4q5s]], [[6p71]], [[6p70]], [[6oy7]], [[6oy6]], [[6oy5]], [[6ow3]], [[6ovy]], [[6ovr]], [[7mli]], [[7mlj]] – TtSF-A in reiterative transcription complex <br /> **[[7rdq]] – TtSF-A in reiterative transcription complex – Cryo EM<br /> **[[5vo8]] – TtSF-A in reiterative transcription complex + GTP<br /> **[[6kqd]], [[6kqe]], [[6kqf]], [[6kqg]], [[6kqh]], [[6kql]], [[6kqm]], [[6kqn]], [[6l74]], [[6lts]], [[5e17]], [[5e18]] – TtSF-A in initial&lt;br/&gt;transcription complex <br /> **[[6wox]], [[6woy]] – TtSF-A in initial transcription complex + CPT<br /> **[[1smy]] – TtSF + RNAP subunits α,β,β’,ω + G4P<br /> **[[5voi]] – TtSF-A + TtRNAP subunits α,β,β’,ω + DNA <br /> **[[7eh2]], [[7mlb]] – TtSF-A in transcription initiation complex <br /> **[[5d4c]] – TtSF-A in transcription initiation complex + CTP + ATP<br /> **[[5d4d]] – TtSF-A in transcription initiation complex + CTP + NAD<br /> **[[5d4e]] – TtSF-A in transcription initiation complex + CTP + dephosphate-CoA<br /> **[[5x22]], [[7eh0]], [[7eh1]] – TtSF-A in transcription initiation complex + CMPPP<br /> **[[5i2d]] – TtSF-A in transcription activation complex + transcriptional regulator <br /> **[[7f75]] – BsSF-A in transcription activation complex + transcriptional regulator – Cryo EM<br /> **[[7ckq]] – BsSF-A in transcription activation complex + multidrug regulator + YKZG – Cryo EM<br /> **[[3n97]] – TaSF-A region 4 + RNAP subunits α + DNA<br /> **[[4xln]], [[4xlp]], [[4xlq]], [[5tjg]] – TaSF-A in transcription initiation complex<br /> **[[1l9z]] – TaSF-A + RNAP subunits α,β,β’,ω + DNA – Cryo EM <br /> **[[4xlr]], [[4xls]] – TaSF-A in transcription initiation complex + CarD-like transcriptional regulator<br /> **[[1rio]] - TaSF-A region 4 + repression protein CI + DNA<br /> **[[5uha]], [[5uh5]], [[5uh8]], [[5uh9]], [[7u22]] – MtSF-A in transcription initiation complex<br /> **[[6dcf]] – MtSF-A in transcription initiation complex + RbpA<br /> **[[8hih]] – MtSF-A in transcription initiation complex + transctriptional regulatory protein – Cryo EM<br /> **[[6c04]], [[7kin]] – MtSF-A + RNAP subunits α,β,β’,ω + RbpA + DNA - Cryo EM<br /> **[[7kif]], [[7kim]] – MtSF-A + RNAP subunits α,β,β’,ω + WhiB7 + DNA - Cryo EM<br /> **[[5uhe]], [[5uhf]] – MtSF-A in transcription initiation complex + inhibitor<br /> **[[6jcy]], [[6jcx]], [[5zx2]] – MtSF-H in transcription initiation complex<br /> **[[6kon]], [[6koo]], [[6kop]], [[6koq]] – MtSF-H in transcription initiation complex <br /> **[[6dve]], [[6dvd]], [[7rwi]] – MtSF-L in transcription initiation complex<br /> **[[6dvc]], [[6dvb]], [[6dv9]], [[6tye]], [[6tyf]], [[6tyg]] – MtSF-L in transcription initiation complex <br /> **[[5tw1]], [[6cce]] – MsSF-A in transcription initiation complex + peptide - ''Mycobacterium smegmatis''<br /> **[[5vi5]], [[5vi8]], [[6vvv]] – MsSF-A in transcription initiation complex<br /> **[[7p5x]] – MsSF-A in transcription initiation complex + PafBC – Cryo EM<br /> **[[8i24]] – AtSF-I6 + RNAP subunits α,β,β’,ω + DNA – ''Acetivibrio thermocellum'' - Cryo EM<br /> **[[8i23]] – AtSF-I1 + RNAP subunits α,β,β’,ω + DNA - Cryo EM<br /> **[[7ye1]] , [[7ye2]] – CcSF-70 + RNAP subunits α,β,β’,ω + DNA + GcrA – Cryo EM<br /> **[[7f0r]] – PaSF-38 in transcription activation complex + SutA – Cryo EM<br /> **[[7xl3]], [[7xl4]] – PaSF-S in transcription activation complex + SutA – Cryo EM<br /> **[[7xya]] – PaSF-70 in transcription antitermination complex + ALPA – Cryo EM<br /> **[[8gzg]], [[8gzh]] – SF-A + RNAP subunits α,β,β’,ω + DNA + RNA – ''Synechocystis'' - Cryo EM<br /> **[[8h40]] – AnSF-A + RNAP subunits α,β,β’,ω + DNA + NtcA – ''Anabaena'' - Cryo EM<br /> **[[8h3v]] – AnSF-A + RNAP subunits α,β,β’,ω + DNA + NtcA + NtcB - Cryo EM<br /> **[[7vpd]], [[7vpz]], [[7x74]], [[7x75]], [[7x76]] – ScSF-A + RNAP subunits α,β,β’,ω + metal uptake regulation protein + DNA + RNA - Cryo EM<br /> **[[68hkc]] – EcSF-32 in transcription initiation complex – Cryo EM<br /> **[[6pmi]], [[6pmj]] – EcSF-28 in transcription initiation complex – Cryo EM<br /> **[[5ipl]], [[5ipm]], [[5ipn]] – EcSF-38 in transcription initiation complex <br /> **[[8dy7]], [[8dy9]] – SvSF-A + RNAP subunits α,β,β’,ω + WhiA + WhiB + RbpA + DNA - Cryo EM<br /> *Sigma factor complex with protein and DNA and antibiotics<br /> **[[4oin]], [[4oip]], [[4oiq]], [[4oir]], [[5x21]] – TtSF-A in transcription initiation complex + antibiotic <br /> **[[6cuu]] – TtSF-A + TtRNAP subunits α,β,β’,ω + DNA + antibiotic<br /> **[[2a68]], [[2a69]], [[2a6h]], [[3dxj]], [[3eql]], [[4mq9]] – TtSF-70 + RNAP subunits α,β,β’,ω + antibiotic <br /> **[[5uhg]] – MtSF-A in transcription initiation complex + antibiotic + inhibitor<br /> **[[5uh6]], [[5uhc]], [[5uhd]], [[5uhb]] – MtSF-A in transcription initiation complex + antibiotic<br /> **[[6bzo]] – MtSF-A in transcription initiation complex + RbpA + antibiotic - Cryo EM<br /> **[[6vvt]], [[6vvx]], [[6vvz]] – MtSF-A in transcription initiation complex + antibiotic – Cryo EM<br /> **[[6vvy]], [[6vw0]] – MtSF-A in transcription open promoter complex + antibiotic – Cryo EM<br /> **[[6m7j]] – MtSF-A + RNAP subunits α,β,β’,ω + RBPA + DNA + antibiotic – Cryo EM<br /> **[[6eec]], [[6ee8]], [[6edt]] – MtSF-A + RNAP subunits α,β,β’,ω + RBPA + CARD + DNA + antibiotic – Cryo EM<br /> **[[6ccv]] – MsSF-A in transcription initiation complex + peptide + RbpA + antibiotic<br /> **[[7l7b]] – SF-A + RNAP subunits α,β,β’,ω + antibiotic – Clostridia bacterium - Cryo EM<br /> **[[4mex]], [[4kmu]], [[4kn4]], [[4kn7]], [[4xsx]], [[4xsy]], [[4xsz]] [[4zh3]], [[4zh4]], [[5uac]], [[5uah]], [[5ual]] – EcSF-70 + RNAP subunits α,β,β’,ω + antibiotic <br /> **[[7szj]] – EcSF-70 + RNAP subunits α,β,β’,ω + antibiotic – Cryo EM&lt;br/&gt;<br /> <br /> }}<br /> <br /> [[Category:Topic Page]]</div>

Openfox https://proteopedia.org/index.php?title=Semaphorin_3D_structures&diff=4433729 2026-03-29T15:43:14Z

<p>Openfox: Normalize &lt;br/&gt; usage in #tree blocks</p> <hr /> <div>'''Semaphorin'''<br /> <br /> {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}<br /> {{#tree:id=OrganizedByTopic|openlevels=0|<br /> *Semaphorin 1A<br /> **[[6qp9]] – DmSEMA 1A domain 1-2 – ''Drosophila melanogaster''<br /> *Semaphorin 1B<br /> **[[6fkk]] – DmSEMA 1B extracellular domains 37-602<br /> **[[6fkm]], [[6fkn]] – DmSEMA 1B extracellular domains + plexin A<br /> *Semaphorin 2A<br /> **[[6qp7]] – DmSEMA 2A <br /> *Semaphorin 2B<br /> **[[6qp8]] – DmSEMA 2B <br /> *Semaphorin 3A<br /> **[[1q47]], [[4gz8]] – mSEMA 3A – mouse<br /> **[[4gza]] – mSEMA 3A + plexin A2 + neuropilin 1<br /> **[[7m0r]] – mSEMA 3A + plexin A4 + neuropilin 1 – Cryo EM<br /> *Semaphorin 4<br /> **[[1olz]] – hSEMA 4D extracellular domain – human<br /> **[[3ol2]] - hSEMA 4D extracellular domain + plexin-B1<br /> *Semaphorin 6A<br /> **[[6wts]] – hSEMA 6A + cytotoxin L <br /> **[[3afc]], [[3okw]] - mSEMA 6A extracellular domain<br /> **[[3al8]], [[3oky]] - mSEMA 6A + plexin-A2<br /> *Semaphorin 6D<br /> **[[7y4o]] – rSEMA 6D ectodomain - rat <br /> **[[7y4q]] – rSEMA 6D ectodomain + plexin-A1 <br /> *Semaphorin 7<br /> **[[3nvn]], [[3nvq]], [[3nvx]] – hSEMA 7A + plexin-C1<br /> }}<br /> <br /> [[Category:Topic Page]]</div>

Openfox https://proteopedia.org/index.php?title=Plexin_3D_structures&diff=4433728 2026-03-29T15:43:14Z

<p>Openfox: Normalize &lt;br/&gt; usage in #tree blocks</p> <hr /> <div>{{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}<br /> {{#tree:id=OrganizedByTopic|openlevels=0|<br /> *  <br /> *Plexin A<br /> **[[5l56]], [[5l59]], [[5l5c]] – mPLX-A1 extracellular domain segment 1-10 - mouse<br /> **[[5l7n]] – mPLX-A1 extracellular domain segment 7-10<br /> **[[3ryt]] - mPLX-A1 intracellular domain + Ras-related C3 botulinum toxin substrate<br /> **[[7y4p]] - hPLX-A1 extracellular domain 1-4 27-708 - human<br /> **[[7y4q]] - hPLX-A1 extracellular domain 1-4 + semaphorin<br /> **[[3q3j]] - hPLX-A2  binding domain + Rho-related GTP-binding protein Rho6 <br /> **[[3al8]], [[3oky]] – mPLX-A2 + semaphorin-6A <br /> **[[4gza]] - mPLX-A2 + semaphorin-3A + neuropilin-1<br /> **[[3al9]] – mPLX-A2 SEMA+PSI domain<br /> **[[3okt]] - mPLX-A2 extracellular domain segment 1-4<br /> **[[5l5g]] – mPLX-A2 extracellular domain segment 1-8<br /> **[[5l74]] – mPLX-A2 extracellular domain segment 4-5<br /> **[[3ig3]] - mPLX-A3 intracellular domain<br /> **[[4e74]] - hPLX-A4 Rho GTPase-binding domain<br /> **[[5l5k]], [[5l5l]] – mPLX-A4 extracellular domain <br /> **[[5l5k]] – mPLX-A4 extracellular domain segment 1-10<br /> **[[5l5l]] – mPLX-A4 extracellular domain segment 1-8<br /> **[[5l5m]], [[5l5n]] – mPLX-A4 extracellular domain segment 1-7<br /> **[[7m0r]] – mPLX-A4 + neuropilin + semaphorin - CryoEM<br /> **[[6fkm]], [[6fkn]] - PLX-A + semaphoring – Drosophila melanogaster<br /> *Plexin B; Domains – extracellular 19-535; cytoplasmic 1511-2135; effector 1743-1862<br /> **[[8b3k]] - hPLX-B1 extracellular domain<br /> **[[2r2o]] – hPLX-B1 effector domain<br /> **[[2rex]] - hPLX-B1 effector domain + Rho-related GTP-binding protein Rho6<br /> **[[2jph]] - hPLX-B1 effector domain – NMR<br /> **[[3ol2]] - hPLX-B1 extracellular domain + semaphorin 4D<br /> **[[3sua]], [[3su8]] – hPLX-B1 cytoplasmic domain + RAS-related C3 botulinum toxin substrate<br /> **[[3hm6]] - hPLX-B1 cytoplasmic domain + peptide<br /> **[[7vf3]], [[7vg7]] - hPLX-B1 extracellular domain + peptide<br /> **[[5b4w]] - hPLX-B1 extracellular domain + peptide inhibitor<br /> **[[4e71]] - hPLX-B2 effector domain<br /> **[[5e6p]] - hPLX-B2 cytoplasmic domain + Rho guanine &lt;br/&gt;nucleotide exchange factor 11<br /> **[[8bb7]], [[8bf4]] - mPLX-B1 extracellular domain + nanobody<br /> **[[7kdc]] – mPLX-B2 receptor binding domain 1463-1565 + RhoD<br /> *Plexin C<br /> **[[3kuz]] - hPLX-C1 ubiquitin-like domain<br /> **[[3nvn]], [[3nvq]] – hPLX-C1 + semaphorin 7A<br /> **[[6vxk]] - hPLX-C1 + semaphorin-like protein – Cryo EM<br /> **[[4m8n]] - PLX-C1 intracellular domain + RAP1B – zebra fish<br /> *Plexin D<br /> **[[3h6n]] - hPLX-D1 ubiquitin-like domain<br /> **[[5v6r]] - mPLX-D1 intracellular domain <br /> **[[5v6t]] - mPLX-D1 intracellular domain + GIPC1&lt;br/&gt;<br /> }}<br /> [[Category:Topic Page]]<br />  </div>

Openfox https://proteopedia.org/index.php?title=Transfer_RNA_(tRNA)&diff=4433727 2026-03-29T15:43:13Z

<p>Openfox: Normalize &lt;br/&gt; usage in #tree blocks</p> <hr /> <div>'''tRNA''' or transfer RNA plays a key role in translation, the process of synthesizing proteins from amino acids in a sequence specified by information contained in messenger RNA&lt;ref&gt;Biochemistry 5th ed. Berg JM, Tymoczko JL, Stryer L. New York: W H Freeman; 2002. Section 29.1 &quot;Protein Synthesis Requires the Translation of Nucleotide Sequences Into Amino Acid Sequences&quot; retrieved on 10/31/2018 from [https://www.ncbi.nlm.nih.gov/books/NBK22421]&lt;/ref&gt;&lt;ref&gt;Molecular Biology of the Cell. 4th ed. Section &quot;From RNA to Protein&quot; retrieved on 10/31/2018 from [https://www.ncbi.nlm.nih.gov/books/NBK26829/]&lt;/ref&gt;. During this process, triplets of nucleotides (codons) of the messenger RNA are translated according to the genetic code into one of the 20 amino acids. tRNAs serve as the dictionary in this translation process. [[Image:Translation RNA amino acid.png|right|thumb|350px|Translation of RNA sequence into protein sequence]] They contain a specific triplet nucleotide sequence, the anticodon, and they get attached to a specific (cognate) amino acid. During protein synthesis by ribosomes, tRNAs deliver the correct amino acids through interactions of their anticodon region with the complementary codons on the messenger RNA. Apart from their distinct anticodon regions, different tRNAs have very similar structures, allowing them to all fit into the tRNA-binding sites on the ribosome.<br /> <br /> &lt;StructureSection load='' size='350' side='right' scene='43/433638/Fullview_cartoon/20' caption=''&gt;<br /> ==Structure==<br /> [[Image:TRNA phe yeast.png|left|thumb|Standard 2D cloverleaf structure of tRNA. The shown example is phenylalanine-specific tRNA from yeast]]tRNA is a stable, folded type of RNA present in all living cells. The secondary structure of most tRNA&lt;ref&gt;PMID:4601792&lt;/ref&gt;&lt;ref&gt;PMID:4612535&lt;/ref&gt; is composed of four helical stems (shown in cyan, blue, red and yellow) arranged in a cloverleaf structure and an central four-way junction. &lt;scene name='43/433638/Wireframe/5'&gt;In three dimensions&lt;/scene&gt;, tRNA adopts an &quot;L&quot; shape, with the acceptor end &lt;jmol&gt;<br /> &lt;jmolLink&gt;<br /> &lt;script&gt; select 73-76; selectionHalos ON; delay 0.5; selectionHalos OFF;<br /> &lt;/script&gt;<br /> &lt;text&gt;(⚞⚟)&lt;/text&gt;<br /> &lt;/jmolLink&gt;<br /> &lt;/jmol&gt; on one end and the anticodon &lt;jmol&gt;<br /> &lt;jmolLink&gt;<br /> &lt;script&gt; select 34-36 and sidechain; color cpk; select 34-36; spacefill on; delay 0.5; spacefill off;<br /> &lt;/script&gt;<br /> &lt;text&gt;(⚞⚟)&lt;/text&gt;<br /> &lt;/jmolLink&gt;<br /> &lt;/jmol&gt; on the other end. <br /> At the acceptor end, amino acid are attached via the &lt;scene name='43/433638/Threeprime/3'&gt;2'-OH or 3'-OH group of the last nucleotide in the acceptor stem&lt;/scene&gt;. At the opposite end of the molecule is the &lt;scene name='43/433638/Anticodon_loop/1'&gt;anticodon&lt;/scene&gt;, which pairs with its complementary codon on the messenger RNA. <br /> <br /> The two arms of the &quot;L&quot; &lt;scene name='43/433638/Fullview_cartoon/20'&gt; (cartoon)&lt;/scene&gt; are formed by the &lt;scene name='43/433638/Stemstacking/3'&gt;stacking of the acceptor and TΨC-stem&lt;/scene&gt; on one side, and of the anticodon and D-stem on the other side. &lt;scene name='43/433638/Kissing/4'&gt;Tertiary interactions between the TΨC- and D-loop&lt;/scene&gt; form the corner of the L-shape and stabilize the structure. Non-Watson-Crick hydrogen bonding is important in this core (visualize interactively at [http://jmol.x3dna.org/ DSSR Jmol web interface)]).<br /> In addition to the four stem loops, tRNA have a variable loop located in between the acceptor and D-stems. This variable loop can be quite small, but for some tRNA such as the serine or leucine-specific tRNA, it can form an additional helix. <br /> <br /> '''Modified nucleotides.''' Most tRNAs contain modified nucleotides&lt;ref&gt;PMID:20459084&lt;/ref&gt;, which are added post-transcriptionally by specific enzymes. Common modifications include isomerisation of uridines into [[Pseudouridine|pseudouridines]] (Ψ), methylation of either the ribose and/or the base, thiolation, reduction of uridines into dihydrouridines (D). <br /> [[Image:Pseudouridine.png|center|350px]]<br /> The anticodon loop of the tRNA quite often contains hypermodified bases, the function of which is to stabilize the codon-anticodon interaction within the ribosome. The nature and position of nucleotide modifications is both specific of the organism and the tRNA type. Common modified nucleotides include: <br /> * 5-methyluridine (ribothymidine) at position 54 <br /> * &lt;scene name='43/433638/Pseudouridine/3'&gt;pseudouridine at position 55&lt;/scene&gt; (note the carbon-carbon bond &lt;jmol&gt;&lt;jmolLink&gt;<br /> &lt;script&gt; select 55 and (*.C5, *.C1*);wireframe 0.3; color bonds cyan; delay 1.2;wireframe 0.14;color bonds none;<br /> &lt;/script&gt;<br /> &lt;text&gt;(⚟)&lt;/text&gt;<br /> &lt;/jmolLink&gt;<br /> &lt;/jmol&gt; connecting sugar and base)<br /> * dihydrouridine(s) in the D-loop <br /> * 7-methylguanosine at position 46 <br /> <br /> See also [[Transfer RNA tour]].<br /> <br /> <br /> ==Function==<br /> Cells usually have sets of tRNAs corresponding to all 20 standard amino acids, with anticodons capable of pairing with the 61 &quot;sense&quot; or coding codons. Within the cell, each tRNA undergoes an aminoacylation-deacylation cycle. tRNA are attached to their cognate amino acid ('charged with' or 'aminoacylated') by a family of enzymes called [[Aminoacyl tRNA Synthetase]]s. Charged tRNA associate with the elongation factor EF-Tu (bacteria) or EF1 (eukaryotes) complexed to GTP. These ternary complexes bind to the ribosome. If codon and anticodon are complementary, translation can proceed, the amino acid is incorporated at the C-terminal end of the polypetide chain and eventually, the deacylated tRNA is release for another aminoacylation-deacylation cycle. <br /> <br /> <br /> '''Interaction with ribosomes and mRNA.''' Ribosomes have multiple &lt;scene name='43/433638/Ribosome/3'&gt;binding sites for tRNA&lt;/scene&gt;. During protein synthesis, the partially synthesized protein is always covalently attached to a tRNA bound to the ribosome. When a new tRNA charged with a single amino acid binds to the ribosome, the partially synthesized (nascent) protein is transferred onto the new amino acid bound to the incoming tRNA (the ester bond between nascent protein and tRNA is broken and a new peptide bond between nascent protein and the new amino acid is formed), elongating the nascent protein by one amino acid. This chemistry happens at the 3’-OH of the acceptor stem of tRNA. The other end of tRNA has a role in selecting the correct tRNA (charged with the correct amino acid) through interactions between the anticodon loop at the other end of tRNA with codons on the messenger RNA bound to the ribosome and presented to the tRNA.<br /> <br /> There are special mechanisms to get protein synthesis started (initiation), and to end it (termination). Initiator tRNA is a Met-tRNA which recognizes the methionine codon which is the initial codon in protein synthesis. Initiator-tRNA differs from the protein elongation Met-tRNA by forming a complex with IF-2 and GTP, by bonding to the ribosomal P-site and exclusion from bonding to the ribosomal A-site.<br /> <br /> <br /> '''Aminoacylation.''' Aminoacyl tRNA Synthetases pair amino acids with tRNAs. In this way, they implement the genetic code. These enzymes recognize a single tRNA (e.g. phe-tRNA) and a single amino acid (phenylalanine, in this example) and catalyze formation of an ester bond between the 3’-hydroxyl of the tRNA and the carboxylatic acid of the amino acid.<br /> &lt;scene name='43/433638/Cv/4'&gt;Glutaminyl-tRNA synthetase/tRNA complex (1gtr)&lt;/scene&gt;. The cognate aminoacid is esterified on its 3'-OH by the cognate aminoacyl-tRNA synthetase. The synthetase recognizes structural features on the tRNA, which allows it to discriminate tRNA that are specific for a given aminoacid, from all other (non-cognate) tRNA. These structural features are called identity determinants. They are often (but not exclusively) located in the anticodon sequence and/or in the so-called discriminator base (position 73), just before the 3' -CCA terminus. <br /> <br /> &lt;/StructureSection&gt;<br /> <br /> __NOTOC__<br /> ==3D Structures of tRNA==<br /> Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}<br /> {{#tree:id=OrganizedByTopic|openlevels=0|<br /> *Ala-tRNA<br /> **[[3wqy]], [[3wqz]] – AfRNA + Ala-tRNA synthetase – ''Archaeoglobus fulgidus''<br /> *Arg-tRNA<br /> **[[1f7u]], [[1f7v]] – yRNA + Arg-tRNA synthetase + Arg - yeast<br /> **[[2zuf]] – PhRNA + Arg-tRNA synthetase - ''Pyrococcus horikoshii''<br /> **[[2zue]] – PhRNA + Arg-tRNA synthetase + ATP analog<br /> **[[4x4n]], [[4x4p]], [[4x4t]], [[4x4u]] – AfRNA minihelix + CCA adding enzyme <br /> **[[4x4o]], [[4x4q]], [[4x4r]], [[4x4s]], [[4x4v]] – AfRNA minihelix + CCA adding enzyme + nucleotide<br /> **[[5b63]] – EcRNA + Arg-tRNA synthetase - ''Escherichia coli''<br /> *Asn-tRNA<br /> **[[3kfu]] – TtRNA + Glu-tRNA amidotransferase – ''Thermus thermophilus'' <br /> **[[4wj4]] – PaRNA + Asp-tRNA synthetase + Asp - ''Pseudomonas aeruginosa'' <br /> **[[4wj3]] – PaRNA + Asp-tRNA synthetase + glutamyl-tRNA amidotransferase <br /> *Asp-tRNA&lt;br/&gt;''<br /> **[[1eqr]] – EcRNA – ''Escherichia coli'' <br /> **[[1vtq]] – yRNA <br /> **[[1asy]], [[1asz]] – yRNA + Asp-tRNA synthetase <br /> **[[1efw]] – EcRNA + Asp-tRNA synthetase <br /> **[[1c0a]] – EcRNA + Asp-tRNA synthetase + Asp-AMP<br /> **[[1il2]] – yRNA + Asp-tRNA synthetase + Asp-AMP<br /> *Cys-tRNA<br /> **[[1u0b]] – EcRNA + Cys-tRNA synthetase <br /> **[[2du3]], [[2du4]], [[2du5]], [[2du6]] – AfRNA + phosphoSer-tRNA synthetase <br /> **[[2zzn]] – MjRNA + ATRM5 - ''Methanococcus jannaschii'' <br /> *Sec-tRNA (selenocysteine-tRNA)<br /> **[[3rg5]] – RNA – mouse<br /> **[[3a3a]] – hRNA – human<br /> **[[3hl2]], [[4zdo]], [[4zdp]] – hRNA + phosphoSer-tRNA synthetase <br /> **[[4rqe]], [[4rqf]] – hRNA + Ser-tRNA synthetase <br /> **[[3adb]], [[3adc]], [[3add]] – MjRNA + phosphoSer-tRNA synthetase + AMPPNP<br /> **[[3w3s]] – AaRNA + Ser-tRNA synthetase - ''Aquifex aeolicus'' <br /> **[[3w1k]] – EcRNA + Sec-tRNA synthetase <br /> *Glu-tRNA<br /> **[[1gtr]], [[1gts]] – EcRNA + Glu-tRNA synthetase <br /> **[[1g59]] – TtRNA + Glu-tRNA synthetase <br /> **[[1n77]] – TtRNA + Glu-tRNA synthetase + ATP<br /> **[[2cv0]] – TtRNA + Glu-tRNA synthetase + Glu<br /> **[[2cv2]] – TtRNA + Glu-tRNA synthetase + Glu-AMS<br /> **[[2cv1]] – TtRNA + Glu-tRNA synthetase + ATP + Glu<br /> **[[1n78]], [[2dxi]] – TtRNA + Glu-tRNA synthetase + glutamol-ATP<br /> **[[2d6f]] – RNA + Glu-tRNA amidotransferase – ''Methanothermobacter thermautotrophicus''<br /> **[[2der]], [[2det]], [[2deu]] – EcRNA + MNMA <br /> **[[5hr6]], [[5hr7]] – EcRNA + RLMN <br /> *Gln-tRNA<br /> **[[1qrs]], [[1qrt]], [[1qru]], [[1qtq]], [[1exd]], [[1euq]], [[1euy]] – EcRNA + Gln-tRNA synthetase <br /> **[[1zjw]] – EcRNA + Gln-tRNA synthetase + Gln<br /> **[[4jxx]], [[4jxz]], [[4jyz]] – EcRNA + Gln-tRNA synthetase + ATP<br /> **[[3akz]] – TmRNA + Gln-tRNA synthetase + Glu-AMP – ''Thermotoga maritima''<br /> **[[3al0]] - TmRNA + Glu-tRNA amidotransferase<br /> *Gly-tRNA<br /> **[[4mgm]] – GkRNA – ''Geobacillus kaustophilus''<br /> **[[4mgn]] – GkRNA + T-box riboswitch<br /> **[[4lck]], [[4tzp]], [[4tzv]], [[4tzw]] – BsRNA + ribosomal protein YBXF + T-box riboswitch – ''Bacillus subtilis''<br /> **[[4kr2]], [[4kr3]], [[4e6m]] – hRNA + Gly-tRNA synthetase <br /> *His-tRNA<br /> **[[3wc1]], [[3wc2]] – RNA + His-tRNA-specific guanylyltransferase – ''Candida albicans''<br /> **[[4rdx]] – TtRNA + His-tRNA synthetase <br /> *Ile-tRNA<br /> **[[1qu2]], [[1qu3]], [[1ffy]] – RNA + Ile-tRNA synthetase – ''Staphylococcus aureus''<br /> **[[3a2k]] – GkRNA + Ile-tRNA synthetase <br /> *Leu-tRNA<br /> **[[1wz2]] – PhRNA + Leu-tRNA synthetase <br /> **[[2bte]], [[2byt]] – TtRNA + Leu-tRNA synthase <br /> **[[2v0g]] – TtRNA + Leu-tRNA synthase + antifungal agent<br /> **[[2nqp]], [[2nr0]], [[2nre]] – EcRNA + tRNA pseudouridine synthase <br /> **[[4aq7]], [[4cqn]] – EcRNA + Leu-tRNA synthetase + Leu-AMP<br /> **[[4arc]] – EcRNA + Leu-tRNA synthetase + Leu<br /> **[[4ari]], [[4as1]], [[3zjt]], [[3zju]], [[3zjv]] – EcRNA + Leu-tRNA synthetase + benzoxarborole<br /> **[[3zgz]] – EcRNA + Leu-tRNA synthetase + agrocin<br /> **[[2zzm]] – MjRNA + ATRM5 <br /> **[[3j5y]], [[3j5s]] – hRNA + ERF1 + ERF3A + mRNA <br /> **[[5ah5]] – RNA + Leu-tRNA synthetase + Leu-AMS – ''Agrobacterium radiobacter''<br /> *Lys-tRNA<br /> **[[1fir]] – bRNA primer - bovine<br /> **[[1krs]], [[1krt]] – EcRNA - NMR<br /> **[[5ccx]] – hRNA + tRNA methyltransferase <br /> **[[5ccb]], [[5cd1]] – hRNA + tRNA methyltransferase + SAH<br /> *PyroLys-tRNA<br /> **[[2zni]] – RNA + PyrLys-tRNA synthetase – ''Desulfitobacterium hafniense''<br /> *Met-tRNA<br /> **[[2csx]] – AaRNA + Met-tRNA synthetase <br /> *Phe-tRNA<br /> **[[1ehz]], [[4tna]], [[6tna]], [[1tra]], [[1tn2]], [[1tn1]], [[1fcw]] – yRNA <br /> **[[1eiy]], [[2iy5]], [[3tup]] – TtRNA + Phe-tRNA synthetase <br /> **[[2iy5]] – TtRNA + Phe-tRNA synthetase + Phe-AMP<br /> **[[3tup]] – hRNA + Phe-tRNA synthetase <br /> **[[3foz]], [[2zm5]] – EcRNA + tRNA isopentenyltransferase<br /> **[[2zxu]] – EcRNA + tRNA isopentenyltransferase + DMASPP<br /> **[[4yco]] – EcRNA + tRNA dihydrouridine synthetase <br /> **[[3q1q]], [[3q1r]] – TmRNA + RNase <br /> **[[3izy]] – bRNA + IF-2<br /> *Pro-tRNA<br /> **[[1h4s]] – TtRNA + Pro-tRNA synthetase + ATP <br /> **[[1h4q]] – TtRNA + Pro-tRNA synthetase + ATP + prolinol<br /> *Ser-tRNA<br /> **[[1ser]] – TtRNA + Ser-tRNA synthetase <br /> *Thr-tRNA<br /> **[[1qf6]] – EcRNA + Thr-tRNA synthetase <br /> **[[2fk6]], [[4gcw]] – BsRNA + RNase <br /> **[[4yye]] – yRNA + Thr-tRNA synthetase + Thr-AMP<br /> *Trp-tRNA<br /> **[[2ake]] – bRNA + Trp-tRNA synthetase <br /> **[[2dr2]] – hRNA + Trp-tRNA synthetase <br /> **[[4ycp]] – EcRNA + tRNA dihydrouridine synthetase <br /> *Tyr-tRNA<br /> **[[1h3e]] – TtRNA + Tyr-tRNA synthetase + ATP + tyrosinol<br /> **[[1j1u]] – MjRNA + Tyr-tRNA synthetase + tyrosine <br /> **[[2dlc]] – yRNA + Tyr-tRNA synthetase + Tyr-AMP<br /> *Val-tRNA<br /> **[[1gax]], [[1ivs]] – TtRNA + Val-tRNA synthetase + Val-AMP<br /> **[[1j2b]] – PhRNA + tRNA guanine transglycosylate <br /> *Initiator tRNA (Formyl-methionine-tRNA)<br /> **[[3cw5]], [[3cw6]] – EcRNA <br /> **[[1yfg]] – yRNA <br /> **[[2fmt]] – yRNA + methionyl-tRNAfMet formyltransferase<br /> **[[1qvf]] – HmRNA – ''Haloarcula marismortui''<br /> **[[3qsy]] – SsRNA + IF-2 – ''Sulfolobus solfataricus''<br /> **[[3v11]] – SsRNA + IF-2 + GDPNP<br /> *tRNA<br /> **[[2dr7]], [[2dr9]], [[2drb]], [[2zh3]], [[2zh4]], [[2zh5]], [[2zh7]], [[2zh8]], [[2zh9]], [[2zhb]], [[3ouy]], [[3ov7]], [[3ova]], [[3ovb]], [[3ovs]] – RNA 33-mer + CCA adding enzyme <br /> **[[2dr8]], [[2dra]], [[2zh1]], [[2zh2]], [[2zh6]], [[2zha]] – RNA 33-mer + CCA adding enzyme + nucleotide<br /> **[[3eph]], [[3epj]], [[3epk]], [[3epl]] – RNA + ytRNA isopentenyltransferase<br /> **[[3b0v]] – TtRNA + tRNA dihydrouridine synthetase <br /> **[[4yvi]], [[4yvj]], [[4yvk]] – RNA + tRNA methyltransferase + sinefungin – ''Haemophilus influenzae''<br /> *tRNA in the ribosome<br /> **[[4v9c]], [[486d]], [[1mj1]], [[1ml5]], [[1pn7]], [[1pn8]], [[1zo1]], [[1zo3]], [[3deg]], [[3ep2]], [[3eq3]], [[3eq4]], [[3j46]], [[4v49]], [[4v4v]], [[4v4w]], [[4v50]], [[4v5h]], [[4v69]], [[4v6d]], [[4v6e]], [[4v6k]], [[4v6l]], [[4v6n]], [[4v6o]], [[4v6p]], [[4v6q]], [[4v6r]], [[4v6s]], [[4v6v]], [[4v6y]], [[4v6z]], [[4v70]], [[4v71]], [[4v72]], [[4v73]], [[4v74]], [[4v75]], [[4v76]], [[4v77]], [[4v78]], [[4v79]], [[4v7a]], [[4v7c]], [[4v7d]], [[4v9c]], [[3j7z]], [[3j9z]], [[3ja1]], [[4woi]], [[5gad]], [[5gae]], [[5gag]], [[5gah]], [[5gaf]] – EcRNA <br /> **[[1jgo]], [[1jgp]], [[1jgq]], [[1xnq]], [[1xnr]], [[2om7]], [[3t1h]], [[3t1y]], [[4gkj]], [[4gkk]], [[4jv5]], [[4jya]], [[4v42]], [[4v48]], [[4v4i]], [[4v4j]], [[4v4p]], [[4v4r]], [[4v4s]], [[4v4t]], [[4v4x]], [[4v4y]], [[4v4z]], [[4v51]], [[4v5a]], [[4v5c]], [[4v5d]], [[4v5e]], [[4v5f]], [[4v5g]], [[4v5j]], [[4v5k]], [[4v5l]], [[4v5m]], [[4v5n]], [[4v5p]], [[4v5q]], [[4v5r]], [[4v5s]], [[4v63]], [[4v67]], [[4v68]], [[4v6a]], [[4v6f]], [[4v6g]], [[4v7l]], [[4v7m]], [[4v7p]], [[4v87]], [[4v8b]], [[4v8c]], [[4v8d]], [[4v8e]], [[4v8f]], [[4v8j]], [[4v8n]], [[4v8o]], [[4v8q]], [[4v95]], [[4v97]], [[4v9a]], [[4v9b]], [[4v9h]], [[4v9i]], [[4v9j]], [[4v9n]], [[4v9q]], [[4v9r]], [[4v9s]], [[1vvj]], [[4l47]], [[4l71]], [[4lel]], [[4lfz]], [[4lnt]], [[4lsk]], [[4lt8]], [[4p70]], [[1vy4]], [[1vy5]], [[1vy6]], [[1vy7]], [[4p6f]], [[4w29]], [[4w2e]], [[4w2f]], [[4w2g]], [[4w2h]], [[4w2i]], [[4wt8]], [[4wpo]], [[4wqf]], [[4wqu]], [[4wqy]], [[4y4p]], [[4tua]], [[4tub]], [[4tuc]], [[4tud]], [[4tue]], [[4z8c]], [[4zer]], [[4z3s]], [[4wq1]], [[4wqr]], [[4wr6]], [[4wra]], [[4wro]], [[4wsd]], [[4wsm]], [[4wt1]], [[4wu1]], [[4wzd]], [[4wzo]], [[5aa0]], [[5d8b]], [[4w4g]], [[4ypb]], [[4yzv]], [[5doy]], [[5e7k]], [[5e81]], [[5el4]], [[5el5]] – TtRNA <br /> **[[1njm]], [[1njp]] – RNA – ''Deinococcus radiodurans''<br /> **[[1qvf]] – HmRNA <br /> **[[3j0l]], [[3j0o]], [[3j0p]], [[3j0q]], [[4uje]], [[4ujc]], [[4ujd]], [[3j92]], [[3jaj]], [[3jan]], [[3jag]], [[3jah]], [[3jai]] – RNA – rabbit<br /> **[[3j16]], [[3j6b]], [[4v6i]], [[4v8y]], [[4v8z]], [[5gak]] – yRNA <br /> **[[4v4n]] – MjRNA <br /> **[[4v5z]] – RNA - dog<br /> **[[4v6u]] – RNA – ''Pyrococcus furiosuso''<br /> **[[4v6w]] – RNA – ''Drosophila melanogaster''<br /> **[[4v6x]], [[3j7y]], [[3j9m]], [[4ug0]], [[5a8l]] – hRNA <br /> **[[4v7e]] – RNA - wheat<br /> **[[4v7h]] – RNA - ''Thermomyces lanuginosus''<br /> **[[4v8m]] – RNA – ''Trypanosoma brucei''<br /> **[[3j7a]], [[3jbn]], [[3jbo]], [[3jbp]] – RNA – ''Plasmodium falciparum''<br /> **[[3j7r]], [[4v19]], [[5aj3]], [[5aj4]] – RNA - pig<br /> **[[4wj3]] – PaRNA <br /> **[[3j9w]] – BsRNA <br /> **[[3jbu]] – RNA - ''Bolitoglossa''&lt;br/&gt;<br /> }}<br /> ==See Also==<br /> * [[Translation]]<br /> * [[Ribosome]]<br /> * [[Pseudouridine]]<br /> * [[2czj|tmRNA]]<br /> * [[Aminoacyl tRNA Synthetase]]<br /> ==References==<br /> &lt;references/&gt;<br /> <br /> ==Reference for the structure==<br /> &lt;ref group=&quot;xtra&quot;&gt;PMID:10943889&lt;/ref&gt;<br /> &lt;references group=&quot;xtra&quot;/&gt;<br /> <br /> <br /> [[Category: Trna]]<br /> [[Category: Topic Page]]<br /> [[Category: Translation]]<br /> [[Category: Modification]]<br /> [[Category: RNA]]<br /> [[Category: amino acid]]</div>

Openfox https://proteopedia.org/index.php?title=Plexin_3D_structures&diff=4433726 2026-03-29T15:42:08Z

<p>Openfox: Normalize &lt;br/&gt; usage in #tree blocks</p> <hr /> <div>{{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}<br /> {{#tree:id=OrganizedByTopic|openlevels=0|<br /> *  <br /> *Plexin A<br /> **[[5l56]], [[5l59]], [[5l5c]] – mPLX-A1 extracellular domain segment 1-10 - mouse<br /> **[[5l7n]] – mPLX-A1 extracellular domain segment 7-10<br /> **[[3ryt]] - mPLX-A1 intracellular domain + Ras-related C3 botulinum toxin substrate<br /> **[[7y4p]] - hPLX-A1 extracellular domain 1-4 27-708 - human<br /> **[[7y4q]] - hPLX-A1 extracellular domain 1-4 + semaphorin<br /> **[[3q3j]] - hPLX-A2  binding domain + Rho-related GTP-binding protein Rho6 <br /> **[[3al8]], [[3oky]] – mPLX-A2 + semaphorin-6A <br /> **[[4gza]] - mPLX-A2 + semaphorin-3A + neuropilin-1<br /> **[[3al9]] – mPLX-A2 SEMA+PSI domain<br /> **[[3okt]] - mPLX-A2 extracellular domain segment 1-4<br /> **[[5l5g]] – mPLX-A2 extracellular domain segment 1-8<br /> **[[5l74]] – mPLX-A2 extracellular domain segment 4-5<br /> **[[3ig3]] - mPLX-A3 intracellular domain<br /> **[[4e74]] - hPLX-A4 Rho GTPase-binding domain<br /> **[[5l5k]], [[5l5l]] – mPLX-A4 extracellular domain <br /> **[[5l5k]] – mPLX-A4 extracellular domain segment 1-10<br /> **[[5l5l]] – mPLX-A4 extracellular domain segment 1-8<br /> **[[5l5m]], [[5l5n]] – mPLX-A4 extracellular domain segment 1-7<br /> **[[7m0r]] – mPLX-A4 + neuropilin + semaphorin - CryoEM<br /> **[[6fkm]], [[6fkn]] - PLX-A + semaphoring – Drosophila melanogaster<br /> *Plexin B; Domains – extracellular 19-535; cytoplasmic 1511-2135; effector 1743-1862<br /> **[[8b3k]] - hPLX-B1 extracellular domain<br /> **[[2r2o]] – hPLX-B1 effector domain<br /> **[[2rex]] - hPLX-B1 effector domain + Rho-related GTP-binding protein Rho6<br /> **[[2jph]] - hPLX-B1 effector domain – NMR<br /> **[[3ol2]] - hPLX-B1 extracellular domain + semaphorin 4D<br /> **[[3sua]], [[3su8]] – hPLX-B1 cytoplasmic domain + RAS-related C3 botulinum toxin substrate<br /> **[[3hm6]] - hPLX-B1 cytoplasmic domain + peptide<br /> **[[7vf3]], [[7vg7]] - hPLX-B1 extracellular domain + peptide<br /> **[[5b4w]] - hPLX-B1 extracellular domain + peptide inhibitor<br /> **[[4e71]] - hPLX-B2 effector domain<br /> **[[5e6p]] - hPLX-B2 cytoplasmic domain + Rho guanine &lt;br/&gt;nucleotide exchange factor 11<br /> **[[8bb7]], [[8bf4]] - mPLX-B1 extracellular domain + nanobody<br /> **[[7kdc]] – mPLX-B2 receptor binding domain 1463-1565 + RhoD&lt;br/&gt;<br /> *Plexin C<br /> **[[3kuz]] - hPLX-C1 ubiquitin-like domain<br /> **[[3nvn]], [[3nvq]] – hPLX-C1 + semaphorin 7A<br /> **[[6vxk]] - hPLX-C1 + semaphorin-like protein – Cryo EM<br /> **[[4m8n]] - PLX-C1 intracellular domain + RAP1B – zebra fish&lt;br/&gt;<br /> *Plexin D<br /> **[[3h6n]] - hPLX-D1 ubiquitin-like domain<br /> **[[5v6r]] - mPLX-D1 intracellular domain <br /> **[[5v6t]] - mPLX-D1 intracellular domain + GIPC1&lt;br/&gt;<br /> }}<br /> [[Category:Topic Page]]<br />  </div>

Openfox https://proteopedia.org/index.php?title=Plexin_3D_structures&diff=4433725 2026-03-29T15:39:33Z

<p>Openfox: </p> <hr /> <div>{{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}<br /> {{#tree:id=OrganizedByTopic|openlevels=0|<br /> *  <br /> *Plexin A&lt;br&gt; <br /> **[[5l56]], [[5l59]], [[5l5c]] – mPLX-A1 extracellular domain segment 1-10 - mouse&lt;br /&gt;<br /> **[[5l7n]] – mPLX-A1 extracellular domain segment 7-10&lt;br /&gt;<br /> **[[3ryt]] - mPLX-A1 intracellular domain + Ras-related C3 botulinum toxin substrate<br /> **[[7y4p]] - hPLX-A1 extracellular domain 1-4 27-708 - human&lt;br /&gt;<br /> **[[7y4q]] - hPLX-A1 extracellular domain 1-4 + semaphorin&lt;br /&gt;<br /> **[[3q3j]] - hPLX-A2  binding domain + Rho-related GTP-binding protein Rho6 <br /> **[[3al8]], [[3oky]] – mPLX-A2 + semaphorin-6A <br /> **[[4gza]] - mPLX-A2 + semaphorin-3A + neuropilin-1<br /> **[[3al9]] – mPLX-A2 SEMA+PSI domain<br /> **[[3okt]] - mPLX-A2 extracellular domain segment 1-4&lt;br /&gt;<br /> **[[5l5g]] – mPLX-A2 extracellular domain segment 1-8&lt;br /&gt;<br /> **[[5l74]] – mPLX-A2 extracellular domain segment 4-5&lt;br /&gt;<br /> **[[3ig3]] - mPLX-A3 intracellular domain<br /> **[[4e74]] - hPLX-A4 Rho GTPase-binding domain<br /> **[[5l5k]], [[5l5l]] – mPLX-A4 extracellular domain &lt;br /&gt;<br /> **[[5l5k]] – mPLX-A4 extracellular domain segment 1-10&lt;br /&gt;<br /> **[[5l5l]] – mPLX-A4 extracellular domain segment 1-8&lt;br /&gt;<br /> **[[5l5m]], [[5l5n]] – mPLX-A4 extracellular domain segment 1-7&lt;br /&gt;<br /> **[[7m0r]] – mPLX-A4 + neuropilin + semaphorin - CryoEM&lt;br /&gt;<br /> **[[6fkm]], [[6fkn]] - PLX-A + semaphoring – Drosophila melanogaster&lt;br /&gt;<br /> *Plexin B; Domains – extracellular 19-535; cytoplasmic 1511-2135; effector 1743-1862&lt;br&gt; <br /> **[[8b3k]] - hPLX-B1 extracellular domain&lt;br /&gt;<br /> **[[2r2o]] – hPLX-B1 effector domain&lt;br /&gt;<br /> **[[2rex]] - hPLX-B1 effector domain + Rho-related GTP-binding protein Rho6&lt;br /&gt;<br /> **[[2jph]] - hPLX-B1 effector domain – NMR&lt;br /&gt;<br /> **[[3ol2]] - hPLX-B1 extracellular domain + semaphorin 4D&lt;br /&gt;<br /> **[[3sua]], [[3su8]] – hPLX-B1 cytoplasmic domain + RAS-related C3 botulinum toxin substrate&lt;br /&gt;<br /> **[[3hm6]] - hPLX-B1 cytoplasmic domain + peptide&lt;br /&gt;<br /> **[[7vf3]], [[7vg7]] - hPLX-B1 extracellular domain + peptide&lt;br /&gt;<br /> **[[5b4w]] - hPLX-B1 extracellular domain + peptide inhibitor&lt;br /&gt;<br /> **[[4e71]] - hPLX-B2 effector domain&lt;br /&gt;<br /> **[[5e6p]] - hPLX-B2 cytoplasmic domain + Rho guanine &lt;br /&gt;nucleotide exchange factor 11&lt;br /&gt;<br /> **[[8bb7]], [[8bf4]] - mPLX-B1 extracellular domain + nanobody&lt;br /&gt;<br /> **[[7kdc]] – mPLX-B2 receptor binding domain 1463-1565 + RhoD&lt;br /&gt;&lt;br&gt; <br /> *Plexin C&lt;br&gt; <br /> **[[3kuz]] - hPLX-C1 ubiquitin-like domain&lt;br /&gt;<br /> **[[3nvn]], [[3nvq]] – hPLX-C1 + semaphorin 7A&lt;br /&gt;<br /> **[[6vxk]] - hPLX-C1 + semaphorin-like protein – Cryo EM&lt;br /&gt;<br /> **[[4m8n]] - PLX-C1 intracellular domain + RAP1B – zebra fish&lt;br /&gt;&lt;br&gt; <br /> *Plexin D&lt;br&gt; <br /> **[[3h6n]] - hPLX-D1 ubiquitin-like domain&lt;br /&gt;<br /> **[[5v6r]] - mPLX-D1 intracellular domain &lt;br /&gt;<br /> **[[5v6t]] - mPLX-D1 intracellular domain + GIPC1&lt;br /&gt;<br /> }}<br /> [[Category:Topic Page]]<br />  </div>

Openfox https://proteopedia.org/index.php?title=Plexin_3D_structures&diff=4433724 2026-03-29T15:35:58Z

<p>Openfox: Normalize &lt;br/&gt; usage in #tree blocks</p> <hr /> <div>{{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}<br /> {{#tree:id=OrganizedByTopic|openlevels=0|<br /> *  <br /> *Plexin A&lt;br/&gt; <br /> **[[5l56]], [[5l59]], [[5l5c]] – mPLX-A1 extracellular domain segment 1-10 - mouse<br /> **[[5l7n]] – mPLX-A1 extracellular domain segment 7-10<br /> **[[3ryt]] - mPLX-A1 intracellular domain + Ras-related C3 botulinum toxin substrate<br /> **[[7y4p]] - hPLX-A1 extracellular domain 1-4 27-708 - human<br /> **[[7y4q]] - hPLX-A1 extracellular domain 1-4 + semaphorin<br /> **[[3q3j]] - hPLX-A2  binding domain + Rho-related GTP-binding protein Rho6 <br /> **[[3al8]], [[3oky]] – mPLX-A2 + semaphorin-6A <br /> **[[4gza]] - mPLX-A2 + semaphorin-3A + neuropilin-1<br /> **[[3al9]] – mPLX-A2 SEMA+PSI domain<br /> **[[3okt]] - mPLX-A2 extracellular domain segment 1-4<br /> **[[5l5g]] – mPLX-A2 extracellular domain segment 1-8<br /> **[[5l74]] – mPLX-A2 extracellular domain segment 4-5<br /> **[[3ig3]] - mPLX-A3 intracellular domain<br /> **[[4e74]] - hPLX-A4 Rho GTPase-binding domain<br /> **[[5l5k]], [[5l5l]] – mPLX-A4 extracellular domain <br /> **[[5l5k]] – mPLX-A4 extracellular domain segment 1-10<br /> **[[5l5l]] – mPLX-A4 extracellular domain segment 1-8<br /> **[[5l5m]], [[5l5n]] – mPLX-A4 extracellular domain segment 1-7<br /> **[[7m0r]] – mPLX-A4 + neuropilin + semaphorin - CryoEM<br /> **[[6fkm]], [[6fkn]] - PLX-A + semaphoring – Drosophila melanogaster<br /> *Plexin B; Domains – extracellular 19-535; cytoplasmic 1511-2135; effector 1743-1862&lt;br/&gt; <br /> **[[8b3k]] - hPLX-B1 extracellular domain<br /> **[[2r2o]] – hPLX-B1 effector domain<br /> **[[2rex]] - hPLX-B1 effector domain + Rho-related GTP-binding protein Rho6<br /> **[[2jph]] - hPLX-B1 effector domain – NMR<br /> **[[3ol2]] - hPLX-B1 extracellular domain + semaphorin 4D<br /> **[[3sua]], [[3su8]] – hPLX-B1 cytoplasmic domain + RAS-related C3 botulinum toxin substrate<br /> **[[3hm6]] - hPLX-B1 cytoplasmic domain + peptide<br /> **[[7vf3]], [[7vg7]] - hPLX-B1 extracellular domain + peptide<br /> **[[5b4w]] - hPLX-B1 extracellular domain + peptide inhibitor<br /> **[[4e71]] - hPLX-B2 effector domain<br /> **[[5e6p]] - hPLX-B2 cytoplasmic domain + Rho guanine &lt;br/&gt;nucleotide exchange factor 11<br /> **[[8bb7]], [[8bf4]] - mPLX-B1 extracellular domain + nanobody<br /> **[[7kdc]] – mPLX-B2 receptor binding domain 1463-1565 + RhoD&lt;br/&gt;&lt;br/&gt; <br /> *Plexin C&lt;br/&gt; <br /> **[[3kuz]] - hPLX-C1 ubiquitin-like domain<br /> **[[3nvn]], [[3nvq]] – hPLX-C1 + semaphorin 7A<br /> **[[6vxk]] - hPLX-C1 + semaphorin-like protein – Cryo EM<br /> **[[4m8n]] - PLX-C1 intracellular domain + RAP1B – zebra fish&lt;br/&gt;&lt;br/&gt; <br /> *Plexin D&lt;br/&gt; <br /> **[[3h6n]] - hPLX-D1 ubiquitin-like domain<br /> **[[5v6r]] - mPLX-D1 intracellular domain <br /> **[[5v6t]] - mPLX-D1 intracellular domain + GIPC1&lt;br/&gt;<br /> }}<br /> [[Category:Topic Page]]<br />  </div>

Openfox https://proteopedia.org/index.php?title=Plexin_3D_structures&diff=4433723 2026-03-29T14:22:05Z

<p>Openfox: </p> <hr /> <div>{{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}<br /> {{#tree:id=OrganizedByTopic|openlevels=0|<br /> *  <br /> *Plexin A&lt;br&gt; <br /> **[[5l56]], [[5l59]], [[5l5c]] – mPLX-A1 extracellular domain segment 1-10 - mouse&lt;br /&gt;<br /> **[[5l7n]] – mPLX-A1 extracellular domain segment 7-10&lt;br /&gt;<br /> **[[3ryt]] - mPLX-A1 intracellular domain + Ras-related C3 botulinum toxin substrate<br /> **[[7y4p]] - hPLX-A1 extracellular domain 1-4 27-708 - human&lt;br /&gt;<br /> **[[7y4q]] - hPLX-A1 extracellular domain 1-4 + semaphorin&lt;br /&gt;<br /> **[[3q3j]] - hPLX-A2  binding domain + Rho-related GTP-binding protein Rho6 <br /> **[[3al8]], [[3oky]] – mPLX-A2 + semaphorin-6A <br /> **[[4gza]] - mPLX-A2 + semaphorin-3A + neuropilin-1<br /> **[[3al9]] – mPLX-A2 SEMA+PSI domain<br /> **[[3okt]] - mPLX-A2 extracellular domain segment 1-4&lt;br /&gt;<br /> **[[5l5g]] – mPLX-A2 extracellular domain segment 1-8&lt;br /&gt;<br /> **[[5l74]] – mPLX-A2 extracellular domain segment 4-5&lt;br /&gt;<br /> **[[3ig3]] - mPLX-A3 intracellular domain<br /> **[[4e74]] - hPLX-A4 Rho GTPase-binding domain<br /> **[[5l5k]], [[5l5l]] – mPLX-A4 extracellular domain &lt;br /&gt;<br /> **[[5l5k]] – mPLX-A4 extracellular domain segment 1-10&lt;br /&gt;<br /> **[[5l5l]] – mPLX-A4 extracellular domain segment 1-8&lt;br /&gt;<br /> **[[5l5m]], [[5l5n]] – mPLX-A4 extracellular domain segment 1-7&lt;br /&gt;<br /> **[[7m0r]] – mPLX-A4 + neuropilin + semaphorin - CryoEM&lt;br /&gt;<br /> **[[6fkm]], [[6fkn]] - PLX-A + semaphoring – Drosophila melanogaster&lt;br /&gt;<br /> *Plexin B; Domains – extracellular 19-535; cytoplasmic 1511-2135; effector 1743-1862&lt;br&gt; <br /> **[[8b3k]] - hPLX-B1 extracellular domain&lt;br /&gt;<br /> **[[2r2o]] – hPLX-B1 effector domain&lt;br /&gt;<br /> **[[2rex]] - hPLX-B1 effector domain + Rho-related GTP-binding protein Rho6&lt;br /&gt;<br /> **[[2jph]] - hPLX-B1 effector domain – NMR&lt;br /&gt;<br /> **[[3ol2]] - hPLX-B1 extracellular domain + semaphorin 4D&lt;br /&gt;<br /> **[[3sua]], [[3su8]] – hPLX-B1 cytoplasmic domain + RAS-related C3 botulinum toxin substrate&lt;br /&gt;<br /> **[[3hm6]] - hPLX-B1 cytoplasmic domain + peptide&lt;br /&gt;<br /> **[[7vf3]], [[7vg7]] - hPLX-B1 extracellular domain + peptide&lt;br /&gt;<br /> **[[5b4w]] - hPLX-B1 extracellular domain + peptide inhibitor&lt;br /&gt;<br /> **[[4e71]] - hPLX-B2 effector domain&lt;br /&gt;<br /> **[[5e6p]] - hPLX-B2 cytoplasmic domain + Rho guanine &lt;br /&gt;nucleotide exchange factor 11&lt;br /&gt;<br /> **[[8bb7]], [[8bf4]] - mPLX-B1 extracellular domain + nanobody&lt;br /&gt;<br /> **[[7kdc]] – mPLX-B2 receptor binding domain 1463-1565 + RhoD&lt;br /&gt;&lt;br&gt; <br /> *Plexin C&lt;br&gt; <br /> **[[3kuz]] - hPLX-C1 ubiquitin-like domain&lt;br /&gt;<br /> **[[3nvn]], [[3nvq]] – hPLX-C1 + semaphorin 7A&lt;br /&gt;<br /> **[[6vxk]] - hPLX-C1 + semaphorin-like protein – Cryo EM&lt;br /&gt;<br /> **[[4m8n]] - PLX-C1 intracellular domain + RAP1B – zebra fish&lt;br /&gt;&lt;br&gt; <br /> *Plexin D&lt;br&gt; <br /> **[[3h6n]] - hPLX-D1 ubiquitin-like domain&lt;br /&gt;<br /> **[[5v6r]] - mPLX-D1 intracellular domain &lt;br /&gt;<br /> **[[5v6t]] - mPLX-D1 intracellular domain + GIPC1&lt;br /&gt;<br /> }}<br /> [[Category:Topic Page]]<br />  </div>

Openfox https://proteopedia.org/index.php?title=Plexin_3D_structures&diff=4433722 2026-03-29T14:19:06Z

<p>Openfox: Normalize &lt;br/&gt; usage in #tree blocks</p> <hr /> <div>{{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}<br /> {{#tree:id=OrganizedByTopic|openlevels=0|<br /> *  <br /> *Plexin A&lt;br/&gt; <br /> **[[5l56]], [[5l59]], [[5l5c]] – mPLX-A1 extracellular domain segment 1-10 - mouse<br /> **[[5l7n]] – mPLX-A1 extracellular domain segment 7-10<br /> **[[3ryt]] - mPLX-A1 intracellular domain + Ras-related C3 botulinum toxin substrate<br /> **[[7y4p]] - hPLX-A1 extracellular domain 1-4 27-708 - human<br /> **[[7y4q]] - hPLX-A1 extracellular domain 1-4 + semaphorin<br /> **[[3q3j]] - hPLX-A2  binding domain + Rho-related GTP-binding protein Rho6 <br /> **[[3al8]], [[3oky]] – mPLX-A2 + semaphorin-6A <br /> **[[4gza]] - mPLX-A2 + semaphorin-3A + neuropilin-1<br /> **[[3al9]] – mPLX-A2 SEMA+PSI domain<br /> **[[3okt]] - mPLX-A2 extracellular domain segment 1-4<br /> **[[5l5g]] – mPLX-A2 extracellular domain segment 1-8<br /> **[[5l74]] – mPLX-A2 extracellular domain segment 4-5<br /> **[[3ig3]] - mPLX-A3 intracellular domain<br /> **[[4e74]] - hPLX-A4 Rho GTPase-binding domain<br /> **[[5l5k]], [[5l5l]] – mPLX-A4 extracellular domain <br /> **[[5l5k]] – mPLX-A4 extracellular domain segment 1-10<br /> **[[5l5l]] – mPLX-A4 extracellular domain segment 1-8<br /> **[[5l5m]], [[5l5n]] – mPLX-A4 extracellular domain segment 1-7<br /> **[[7m0r]] – mPLX-A4 + neuropilin + semaphorin - CryoEM<br /> **[[6fkm]], [[6fkn]] - PLX-A + semaphoring – Drosophila melanogaster<br /> *Plexin B; Domains – extracellular 19-535; cytoplasmic 1511-2135; effector 1743-1862&lt;br/&gt; <br /> **[[8b3k]] - hPLX-B1 extracellular domain<br /> **[[2r2o]] – hPLX-B1 effector domain<br /> **[[2rex]] - hPLX-B1 effector domain + Rho-related GTP-binding protein Rho6<br /> **[[2jph]] - hPLX-B1 effector domain – NMR<br /> **[[3ol2]] - hPLX-B1 extracellular domain + semaphorin 4D<br /> **[[3sua]], [[3su8]] – hPLX-B1 cytoplasmic domain + RAS-related C3 botulinum toxin substrate<br /> **[[3hm6]] - hPLX-B1 cytoplasmic domain + peptide<br /> **[[7vf3]], [[7vg7]] - hPLX-B1 extracellular domain + peptide<br /> **[[5b4w]] - hPLX-B1 extracellular domain + peptide inhibitor<br /> **[[4e71]] - hPLX-B2 effector domain<br /> **[[5e6p]] - hPLX-B2 cytoplasmic domain + Rho guanine &lt;br /&gt;nucleotide exchange factor 11<br /> **[[8bb7]], [[8bf4]] - mPLX-B1 extracellular domain + nanobody<br /> **[[7kdc]] – mPLX-B2 receptor binding domain 1463-1565 + RhoD&lt;br /&gt;&lt;br/&gt; <br /> *Plexin C&lt;br/&gt; <br /> **[[3kuz]] - hPLX-C1 ubiquitin-like domain<br /> **[[3nvn]], [[3nvq]] – hPLX-C1 + semaphorin 7A<br /> **[[6vxk]] - hPLX-C1 + semaphorin-like protein – Cryo EM<br /> **[[4m8n]] - PLX-C1 intracellular domain + RAP1B – zebra fish&lt;br /&gt;&lt;br/&gt; <br /> *Plexin D&lt;br/&gt; <br /> **[[3h6n]] - hPLX-D1 ubiquitin-like domain<br /> **[[5v6r]] - mPLX-D1 intracellular domain <br /> **[[5v6t]] - mPLX-D1 intracellular domain + GIPC1&lt;br /&gt;<br /> }}<br /> [[Category:Topic Page]]<br />  </div>

Openfox https://proteopedia.org/index.php?title=Plexin_3D_structures&diff=4433721 2026-03-29T14:15:58Z

<p>Openfox: </p> <hr /> <div>{{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}<br /> {{#tree:id=OrganizedByTopic|openlevels=0|<br /> *  <br /> *Plexin A&lt;br&gt; <br /> **[[5l56]], [[5l59]], [[5l5c]] – mPLX-A1 extracellular domain segment 1-10 - mouse&lt;br /&gt;<br /> **[[5l7n]] – mPLX-A1 extracellular domain segment 7-10&lt;br /&gt;<br /> **[[3ryt]] - mPLX-A1 intracellular domain + Ras-related C3 botulinum toxin substrate<br /> **[[7y4p]] - hPLX-A1 extracellular domain 1-4 27-708 - human&lt;br /&gt;<br /> **[[7y4q]] - hPLX-A1 extracellular domain 1-4 + semaphorin&lt;br /&gt;<br /> **[[3q3j]] - hPLX-A2  binding domain + Rho-related GTP-binding protein Rho6 <br /> **[[3al8]], [[3oky]] – mPLX-A2 + semaphorin-6A <br /> **[[4gza]] - mPLX-A2 + semaphorin-3A + neuropilin-1<br /> **[[3al9]] – mPLX-A2 SEMA+PSI domain<br /> **[[3okt]] - mPLX-A2 extracellular domain segment 1-4&lt;br /&gt;<br /> **[[5l5g]] – mPLX-A2 extracellular domain segment 1-8&lt;br /&gt;<br /> **[[5l74]] – mPLX-A2 extracellular domain segment 4-5&lt;br /&gt;<br /> **[[3ig3]] - mPLX-A3 intracellular domain<br /> **[[4e74]] - hPLX-A4 Rho GTPase-binding domain<br /> **[[5l5k]], [[5l5l]] – mPLX-A4 extracellular domain &lt;br /&gt;<br /> **[[5l5k]] – mPLX-A4 extracellular domain segment 1-10&lt;br /&gt;<br /> **[[5l5l]] – mPLX-A4 extracellular domain segment 1-8&lt;br /&gt;<br /> **[[5l5m]], [[5l5n]] – mPLX-A4 extracellular domain segment 1-7&lt;br /&gt;<br /> **[[7m0r]] – mPLX-A4 + neuropilin + semaphorin - CryoEM&lt;br /&gt;<br /> **[[6fkm]], [[6fkn]] - PLX-A + semaphoring – Drosophila melanogaster&lt;br /&gt;<br /> *Plexin B; Domains – extracellular 19-535; cytoplasmic 1511-2135; effector 1743-1862&lt;br&gt; <br /> **[[8b3k]] - hPLX-B1 extracellular domain&lt;br /&gt;<br /> **[[2r2o]] – hPLX-B1 effector domain&lt;br /&gt;<br /> **[[2rex]] - hPLX-B1 effector domain + Rho-related GTP-binding protein Rho6&lt;br /&gt;<br /> **[[2jph]] - hPLX-B1 effector domain – NMR&lt;br /&gt;<br /> **[[3ol2]] - hPLX-B1 extracellular domain + semaphorin 4D&lt;br /&gt;<br /> **[[3sua]], [[3su8]] – hPLX-B1 cytoplasmic domain + RAS-related C3 botulinum toxin substrate&lt;br /&gt;<br /> **[[3hm6]] - hPLX-B1 cytoplasmic domain + peptide&lt;br /&gt;<br /> **[[7vf3]], [[7vg7]] - hPLX-B1 extracellular domain + peptide&lt;br /&gt;<br /> **[[5b4w]] - hPLX-B1 extracellular domain + peptide inhibitor&lt;br /&gt;<br /> **[[4e71]] - hPLX-B2 effector domain&lt;br /&gt;<br /> **[[5e6p]] - hPLX-B2 cytoplasmic domain + Rho guanine &lt;br /&gt;nucleotide exchange factor 11&lt;br /&gt;<br /> **[[8bb7]], [[8bf4]] - mPLX-B1 extracellular domain + nanobody&lt;br /&gt;<br /> **[[7kdc]] – mPLX-B2 receptor binding domain 1463-1565 + RhoD&lt;br /&gt;&lt;br&gt; <br /> *Plexin C&lt;br&gt; <br /> **[[3kuz]] - hPLX-C1 ubiquitin-like domain&lt;br /&gt;<br /> **[[3nvn]], [[3nvq]] – hPLX-C1 + semaphorin 7A&lt;br /&gt;<br /> **[[6vxk]] - hPLX-C1 + semaphorin-like protein – Cryo EM&lt;br /&gt;<br /> **[[4m8n]] - PLX-C1 intracellular domain + RAP1B – zebra fish&lt;br /&gt;&lt;br&gt; <br /> *Plexin D&lt;br&gt; <br /> **[[3h6n]] - hPLX-D1 ubiquitin-like domain&lt;br /&gt;<br /> **[[5v6r]] - mPLX-D1 intracellular domain &lt;br /&gt;<br /> **[[5v6t]] - mPLX-D1 intracellular domain + GIPC1&lt;br /&gt;<br /> }}<br /> [[Category:Topic Page]]<br />  </div>

Openfox https://proteopedia.org/index.php?title=Plexin_3D_structures&diff=4433720 2026-03-29T14:15:31Z

<p>Openfox: Normalize &lt;br/&gt; usage in #tree blocks</p> <hr /> <div>{{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}<br /> {{#tree:id=OrganizedByTopic|openlevels=0|<br /> *  <br /> *Plexin A&lt;br/&gt; <br /> **[[5l56]], [[5l59]], [[5l5c]] – mPLX-A1 extracellular domain segment 1-10 - mouse&lt;br /&gt;<br /> **[[5l7n]] – mPLX-A1 extracellular domain segment 7-10&lt;br /&gt;<br /> **[[3ryt]] - mPLX-A1 intracellular domain + Ras-related C3 botulinum toxin substrate<br /> **[[7y4p]] - hPLX-A1 extracellular domain 1-4 27-708 - human&lt;br /&gt;<br /> **[[7y4q]] - hPLX-A1 extracellular domain 1-4 + semaphorin&lt;br /&gt;<br /> **[[3q3j]] - hPLX-A2  binding domain + Rho-related GTP-binding protein Rho6 <br /> **[[3al8]], [[3oky]] – mPLX-A2 + semaphorin-6A <br /> **[[4gza]] - mPLX-A2 + semaphorin-3A + neuropilin-1<br /> **[[3al9]] – mPLX-A2 SEMA+PSI domain<br /> **[[3okt]] - mPLX-A2 extracellular domain segment 1-4&lt;br /&gt;<br /> **[[5l5g]] – mPLX-A2 extracellular domain segment 1-8&lt;br /&gt;<br /> **[[5l74]] – mPLX-A2 extracellular domain segment 4-5&lt;br /&gt;<br /> **[[3ig3]] - mPLX-A3 intracellular domain<br /> **[[4e74]] - hPLX-A4 Rho GTPase-binding domain<br /> **[[5l5k]], [[5l5l]] – mPLX-A4 extracellular domain &lt;br /&gt;<br /> **[[5l5k]] – mPLX-A4 extracellular domain segment 1-10&lt;br /&gt;<br /> **[[5l5l]] – mPLX-A4 extracellular domain segment 1-8&lt;br /&gt;<br /> **[[5l5m]], [[5l5n]] – mPLX-A4 extracellular domain segment 1-7&lt;br /&gt;<br /> **[[7m0r]] – mPLX-A4 + neuropilin + semaphorin - CryoEM&lt;br /&gt;<br /> **[[6fkm]], [[6fkn]] - PLX-A + semaphoring – Drosophila melanogaster&lt;br /&gt;<br /> *Plexin B; Domains – extracellular 19-535; cytoplasmic 1511-2135; effector 1743-1862&lt;br/&gt; <br /> **[[8b3k]] - hPLX-B1 extracellular domain&lt;br /&gt;<br /> **[[2r2o]] – hPLX-B1 effector domain&lt;br /&gt;<br /> **[[2rex]] - hPLX-B1 effector domain + Rho-related GTP-binding protein Rho6&lt;br /&gt;<br /> **[[2jph]] - hPLX-B1 effector domain – NMR&lt;br /&gt;<br /> **[[3ol2]] - hPLX-B1 extracellular domain + semaphorin 4D&lt;br /&gt;<br /> **[[3sua]], [[3su8]] – hPLX-B1 cytoplasmic domain + RAS-related C3 botulinum toxin substrate&lt;br /&gt;<br /> **[[3hm6]] - hPLX-B1 cytoplasmic domain + peptide&lt;br /&gt;<br /> **[[7vf3]], [[7vg7]] - hPLX-B1 extracellular domain + peptide&lt;br /&gt;<br /> **[[5b4w]] - hPLX-B1 extracellular domain + peptide inhibitor&lt;br /&gt;<br /> **[[4e71]] - hPLX-B2 effector domain&lt;br /&gt;<br /> **[[5e6p]] - hPLX-B2 cytoplasmic domain + Rho guanine &lt;br /&gt;nucleotide exchange factor 11&lt;br /&gt;<br /> **[[8bb7]], [[8bf4]] - mPLX-B1 extracellular domain + nanobody&lt;br /&gt;<br /> **[[7kdc]] – mPLX-B2 receptor binding domain 1463-1565 + RhoD&lt;br /&gt;&lt;br/&gt; <br /> *Plexin C&lt;br/&gt; <br /> **[[3kuz]] - hPLX-C1 ubiquitin-like domain&lt;br /&gt;<br /> **[[3nvn]], [[3nvq]] – hPLX-C1 + semaphorin 7A&lt;br /&gt;<br /> **[[6vxk]] - hPLX-C1 + semaphorin-like protein – Cryo EM&lt;br /&gt;<br /> **[[4m8n]] - PLX-C1 intracellular domain + RAP1B – zebra fish&lt;br /&gt;&lt;br/&gt; <br /> *Plexin D&lt;br/&gt; <br /> **[[3h6n]] - hPLX-D1 ubiquitin-like domain&lt;br /&gt;<br /> **[[5v6r]] - mPLX-D1 intracellular domain &lt;br /&gt;<br /> **[[5v6t]] - mPLX-D1 intracellular domain + GIPC1&lt;br /&gt;<br /> }}<br /> [[Category:Topic Page]]<br />  </div>

Openfox https://proteopedia.org/index.php?title=Plexin_3D_structures&diff=4433719 2026-03-29T14:15:24Z

<p>Openfox: </p> <hr /> <div>{{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}<br /> {{#tree:id=OrganizedByTopic|openlevels=0|<br /> *  <br /> *Plexin A&lt;br&gt; <br /> **[[5l56]], [[5l59]], [[5l5c]] – mPLX-A1 extracellular domain segment 1-10 - mouse&lt;br /&gt;<br /> **[[5l7n]] – mPLX-A1 extracellular domain segment 7-10&lt;br /&gt;<br /> **[[3ryt]] - mPLX-A1 intracellular domain + Ras-related C3 botulinum toxin substrate<br /> **[[7y4p]] - hPLX-A1 extracellular domain 1-4 27-708 - human&lt;br /&gt;<br /> **[[7y4q]] - hPLX-A1 extracellular domain 1-4 + semaphorin&lt;br /&gt;<br /> **[[3q3j]] - hPLX-A2  binding domain + Rho-related GTP-binding protein Rho6 <br /> **[[3al8]], [[3oky]] – mPLX-A2 + semaphorin-6A <br /> **[[4gza]] - mPLX-A2 + semaphorin-3A + neuropilin-1<br /> **[[3al9]] – mPLX-A2 SEMA+PSI domain<br /> **[[3okt]] - mPLX-A2 extracellular domain segment 1-4&lt;br /&gt;<br /> **[[5l5g]] – mPLX-A2 extracellular domain segment 1-8&lt;br /&gt;<br /> **[[5l74]] – mPLX-A2 extracellular domain segment 4-5&lt;br /&gt;<br /> **[[3ig3]] - mPLX-A3 intracellular domain<br /> **[[4e74]] - hPLX-A4 Rho GTPase-binding domain<br /> **[[5l5k]], [[5l5l]] – mPLX-A4 extracellular domain &lt;br /&gt;<br /> **[[5l5k]] – mPLX-A4 extracellular domain segment 1-10&lt;br /&gt;<br /> **[[5l5l]] – mPLX-A4 extracellular domain segment 1-8&lt;br /&gt;<br /> **[[5l5m]], [[5l5n]] – mPLX-A4 extracellular domain segment 1-7&lt;br /&gt;<br /> **[[7m0r]] – mPLX-A4 + neuropilin + semaphorin - CryoEM&lt;br /&gt;<br /> **[[6fkm]], [[6fkn]] - PLX-A + semaphoring – Drosophila melanogaster&lt;br /&gt;<br /> *Plexin B; Domains – extracellular 19-535; cytoplasmic 1511-2135; effector 1743-1862&lt;br&gt; <br /> **[[8b3k]] - hPLX-B1 extracellular domain&lt;br /&gt;<br /> **[[2r2o]] – hPLX-B1 effector domain&lt;br /&gt;<br /> **[[2rex]] - hPLX-B1 effector domain + Rho-related GTP-binding protein Rho6&lt;br /&gt;<br /> **[[2jph]] - hPLX-B1 effector domain – NMR&lt;br /&gt;<br /> **[[3ol2]] - hPLX-B1 extracellular domain + semaphorin 4D&lt;br /&gt;<br /> **[[3sua]], [[3su8]] – hPLX-B1 cytoplasmic domain + RAS-related C3 botulinum toxin substrate&lt;br /&gt;<br /> **[[3hm6]] - hPLX-B1 cytoplasmic domain + peptide&lt;br /&gt;<br /> **[[7vf3]], [[7vg7]] - hPLX-B1 extracellular domain + peptide&lt;br /&gt;<br /> **[[5b4w]] - hPLX-B1 extracellular domain + peptide inhibitor&lt;br /&gt;<br /> **[[4e71]] - hPLX-B2 effector domain&lt;br /&gt;<br /> **[[5e6p]] - hPLX-B2 cytoplasmic domain + Rho guanine &lt;br /&gt;nucleotide exchange factor 11&lt;br /&gt;<br /> **[[8bb7]], [[8bf4]] - mPLX-B1 extracellular domain + nanobody&lt;br /&gt;<br /> **[[7kdc]] – mPLX-B2 receptor binding domain 1463-1565 + RhoD&lt;br /&gt;&lt;br&gt; <br /> *Plexin C&lt;br&gt; <br /> **[[3kuz]] - hPLX-C1 ubiquitin-like domain&lt;br /&gt;<br /> **[[3nvn]], [[3nvq]] – hPLX-C1 + semaphorin 7A&lt;br /&gt;<br /> **[[6vxk]] - hPLX-C1 + semaphorin-like protein – Cryo EM&lt;br /&gt;<br /> **[[4m8n]] - PLX-C1 intracellular domain + RAP1B – zebra fish&lt;br /&gt;&lt;br&gt; <br /> *Plexin D&lt;br&gt; <br /> **[[3h6n]] - hPLX-D1 ubiquitin-like domain&lt;br /&gt;<br /> **[[5v6r]] - mPLX-D1 intracellular domain &lt;br /&gt;<br /> **[[5v6t]] - mPLX-D1 intracellular domain + GIPC1&lt;br /&gt;<br /> }}<br /> [[Category:Topic Page]]<br />  </div>

Openfox https://proteopedia.org/index.php?title=Plexin_3D_structures&diff=4433718 2026-03-29T14:13:52Z

<p>Openfox: Normalize &lt;br/&gt; usage in #tree blocks</p> <hr /> <div>{{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}<br /> {{#tree:id=OrganizedByTopic|openlevels=0|<br /> *  <br /> *Plexin A&lt;br/&gt; <br /> **[[5l56]], [[5l59]], [[5l5c]] – mPLX-A1 extracellular domain segment 1-10 - mouse&lt;br /&gt;<br /> **[[5l7n]] – mPLX-A1 extracellular domain segment 7-10&lt;br /&gt;<br /> **[[3ryt]] - mPLX-A1 intracellular domain + Ras-related C3 botulinum toxin substrate<br /> **[[7y4p]] - hPLX-A1 extracellular domain 1-4 27-708 - human&lt;br /&gt;<br /> **[[7y4q]] - hPLX-A1 extracellular domain 1-4 + semaphorin&lt;br /&gt;<br /> **[[3q3j]] - hPLX-A2  binding domain + Rho-related GTP-binding protein Rho6 <br /> **[[3al8]], [[3oky]] – mPLX-A2 + semaphorin-6A <br /> **[[4gza]] - mPLX-A2 + semaphorin-3A + neuropilin-1<br /> **[[3al9]] – mPLX-A2 SEMA+PSI domain<br /> **[[3okt]] - mPLX-A2 extracellular domain segment 1-4&lt;br /&gt;<br /> **[[5l5g]] – mPLX-A2 extracellular domain segment 1-8&lt;br /&gt;<br /> **[[5l74]] – mPLX-A2 extracellular domain segment 4-5&lt;br /&gt;<br /> **[[3ig3]] - mPLX-A3 intracellular domain<br /> **[[4e74]] - hPLX-A4 Rho GTPase-binding domain<br /> **[[5l5k]], [[5l5l]] – mPLX-A4 extracellular domain &lt;br /&gt;<br /> **[[5l5k]] – mPLX-A4 extracellular domain segment 1-10&lt;br /&gt;<br /> **[[5l5l]] – mPLX-A4 extracellular domain segment 1-8&lt;br /&gt;<br /> **[[5l5m]], [[5l5n]] – mPLX-A4 extracellular domain segment 1-7&lt;br /&gt;<br /> **[[7m0r]] – mPLX-A4 + neuropilin + semaphorin - CryoEM&lt;br /&gt;<br /> **[[6fkm]], [[6fkn]] - PLX-A + semaphoring – Drosophila melanogaster&lt;br /&gt;<br /> *Plexin B; Domains – extracellular 19-535; cytoplasmic 1511-2135; effector 1743-1862&lt;br/&gt; <br /> **[[8b3k]] - hPLX-B1 extracellular domain&lt;br /&gt;<br /> **[[2r2o]] – hPLX-B1 effector domain&lt;br /&gt;<br /> **[[2rex]] - hPLX-B1 effector domain + Rho-related GTP-binding protein Rho6&lt;br /&gt;<br /> **[[2jph]] - hPLX-B1 effector domain – NMR&lt;br /&gt;<br /> **[[3ol2]] - hPLX-B1 extracellular domain + semaphorin 4D&lt;br /&gt;<br /> **[[3sua]], [[3su8]] – hPLX-B1 cytoplasmic domain + RAS-related C3 botulinum toxin substrate&lt;br /&gt;<br /> **[[3hm6]] - hPLX-B1 cytoplasmic domain + peptide&lt;br /&gt;<br /> **[[7vf3]], [[7vg7]] - hPLX-B1 extracellular domain + peptide&lt;br /&gt;<br /> **[[5b4w]] - hPLX-B1 extracellular domain + peptide inhibitor&lt;br /&gt;<br /> **[[4e71]] - hPLX-B2 effector domain&lt;br /&gt;<br /> **[[5e6p]] - hPLX-B2 cytoplasmic domain + Rho guanine &lt;br /&gt;nucleotide exchange factor 11&lt;br /&gt;<br /> **[[8bb7]], [[8bf4]] - mPLX-B1 extracellular domain + nanobody&lt;br /&gt;<br /> **[[7kdc]] – mPLX-B2 receptor binding domain 1463-1565 + RhoD&lt;br /&gt;&lt;br/&gt; <br /> *Plexin C&lt;br/&gt; <br /> **[[3kuz]] - hPLX-C1 ubiquitin-like domain&lt;br /&gt;<br /> **[[3nvn]], [[3nvq]] – hPLX-C1 + semaphorin 7A&lt;br /&gt;<br /> **[[6vxk]] - hPLX-C1 + semaphorin-like protein – Cryo EM&lt;br /&gt;<br /> **[[4m8n]] - PLX-C1 intracellular domain + RAP1B – zebra fish&lt;br /&gt;&lt;br/&gt; <br /> *Plexin D&lt;br/&gt; <br /> **[[3h6n]] - hPLX-D1 ubiquitin-like domain&lt;br /&gt;<br /> **[[5v6r]] - mPLX-D1 intracellular domain &lt;br /&gt;<br /> **[[5v6t]] - mPLX-D1 intracellular domain + GIPC1&lt;br /&gt;<br /> }}<br /> [[Category:Topic Page]]<br />  </div>

Openfox https://proteopedia.org/index.php?title=Plexin_3D_structures&diff=4433717 2026-03-29T14:13:47Z

<p>Openfox: </p> <hr /> <div>{{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}<br /> {{#tree:id=OrganizedByTopic|openlevels=0|<br /> *  <br /> *Plexin A&lt;br&gt; <br /> **[[5l56]], [[5l59]], [[5l5c]] – mPLX-A1 extracellular domain segment 1-10 - mouse&lt;br /&gt;<br /> **[[5l7n]] – mPLX-A1 extracellular domain segment 7-10&lt;br /&gt;<br /> **[[3ryt]] - mPLX-A1 intracellular domain + Ras-related C3 botulinum toxin substrate<br /> **[[7y4p]] - hPLX-A1 extracellular domain 1-4 27-708 - human&lt;br /&gt;<br /> **[[7y4q]] - hPLX-A1 extracellular domain 1-4 + semaphorin&lt;br /&gt;<br /> **[[3q3j]] - hPLX-A2  binding domain + Rho-related GTP-binding protein Rho6 <br /> **[[3al8]], [[3oky]] – mPLX-A2 + semaphorin-6A <br /> **[[4gza]] - mPLX-A2 + semaphorin-3A + neuropilin-1<br /> **[[3al9]] – mPLX-A2 SEMA+PSI domain<br /> **[[3okt]] - mPLX-A2 extracellular domain segment 1-4&lt;br /&gt;<br /> **[[5l5g]] – mPLX-A2 extracellular domain segment 1-8&lt;br /&gt;<br /> **[[5l74]] – mPLX-A2 extracellular domain segment 4-5&lt;br /&gt;<br /> **[[3ig3]] - mPLX-A3 intracellular domain<br /> **[[4e74]] - hPLX-A4 Rho GTPase-binding domain<br /> **[[5l5k]], [[5l5l]] – mPLX-A4 extracellular domain &lt;br /&gt;<br /> **[[5l5k]] – mPLX-A4 extracellular domain segment 1-10&lt;br /&gt;<br /> **[[5l5l]] – mPLX-A4 extracellular domain segment 1-8&lt;br /&gt;<br /> **[[5l5m]], [[5l5n]] – mPLX-A4 extracellular domain segment 1-7&lt;br /&gt;<br /> **[[7m0r]] – mPLX-A4 + neuropilin + semaphorin - CryoEM&lt;br /&gt;<br /> **[[6fkm]], [[6fkn]] - PLX-A + semaphoring – Drosophila melanogaster&lt;br /&gt;<br /> *Plexin B; Domains – extracellular 19-535; cytoplasmic 1511-2135; effector 1743-1862&lt;br&gt; <br /> **[[8b3k]] - hPLX-B1 extracellular domain&lt;br /&gt;<br /> **[[2r2o]] – hPLX-B1 effector domain&lt;br /&gt;<br /> **[[2rex]] - hPLX-B1 effector domain + Rho-related GTP-binding protein Rho6&lt;br /&gt;<br /> **[[2jph]] - hPLX-B1 effector domain – NMR&lt;br /&gt;<br /> **[[3ol2]] - hPLX-B1 extracellular domain + semaphorin 4D&lt;br /&gt;<br /> **[[3sua]], [[3su8]] – hPLX-B1 cytoplasmic domain + RAS-related C3 botulinum toxin substrate&lt;br /&gt;<br /> **[[3hm6]] - hPLX-B1 cytoplasmic domain + peptide&lt;br /&gt;<br /> **[[7vf3]], [[7vg7]] - hPLX-B1 extracellular domain + peptide&lt;br /&gt;<br /> **[[5b4w]] - hPLX-B1 extracellular domain + peptide inhibitor&lt;br /&gt;<br /> **[[4e71]] - hPLX-B2 effector domain&lt;br /&gt;<br /> **[[5e6p]] - hPLX-B2 cytoplasmic domain + Rho guanine &lt;br /&gt;nucleotide exchange factor 11&lt;br /&gt;<br /> **[[8bb7]], [[8bf4]] - mPLX-B1 extracellular domain + nanobody&lt;br /&gt;<br /> **[[7kdc]] – mPLX-B2 receptor binding domain 1463-1565 + RhoD&lt;br /&gt;&lt;br&gt; <br /> *Plexin C&lt;br&gt; <br /> **[[3kuz]] - hPLX-C1 ubiquitin-like domain&lt;br /&gt;<br /> **[[3nvn]], [[3nvq]] – hPLX-C1 + semaphorin 7A&lt;br /&gt;<br /> **[[6vxk]] - hPLX-C1 + semaphorin-like protein – Cryo EM&lt;br /&gt;<br /> **[[4m8n]] - PLX-C1 intracellular domain + RAP1B – zebra fish&lt;br /&gt;&lt;br&gt; <br /> *Plexin D&lt;br&gt; <br /> **[[3h6n]] - hPLX-D1 ubiquitin-like domain&lt;br /&gt;<br /> **[[5v6r]] - mPLX-D1 intracellular domain &lt;br /&gt;<br /> **[[5v6t]] - mPLX-D1 intracellular domain + GIPC1&lt;br /&gt;<br /> }}<br /> [[Category:Topic Page]]<br />  </div>

Openfox https://proteopedia.org/index.php?title=Plexin_3D_structures&diff=4433716 2026-03-29T14:11:06Z

<p>Openfox: Normalize &lt;br/&gt; usage in #tree blocks</p> <hr /> <div>{{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}<br /> {{#tree:id=OrganizedByTopic|openlevels=0|<br /> *  <br /> *Plexin A&lt;br/&gt; <br /> **[[5l56]], [[5l59]], [[5l5c]] – mPLX-A1 extracellular domain segment 1-10 - mouse&lt;br /&gt;<br /> **[[5l7n]] – mPLX-A1 extracellular domain segment 7-10&lt;br /&gt;<br /> **[[3ryt]] - mPLX-A1 intracellular domain + Ras-related C3 botulinum toxin substrate<br /> **[[7y4p]] - hPLX-A1 extracellular domain 1-4 27-708 - human&lt;br /&gt;<br /> **[[7y4q]] - hPLX-A1 extracellular domain 1-4 + semaphorin&lt;br /&gt;<br /> **[[3q3j]] - hPLX-A2  binding domain + Rho-related GTP-binding protein Rho6 <br /> **[[3al8]], [[3oky]] – mPLX-A2 + semaphorin-6A <br /> **[[4gza]] - mPLX-A2 + semaphorin-3A + neuropilin-1<br /> **[[3al9]] – mPLX-A2 SEMA+PSI domain<br /> **[[3okt]] - mPLX-A2 extracellular domain segment 1-4&lt;br /&gt;<br /> **[[5l5g]] – mPLX-A2 extracellular domain segment 1-8&lt;br /&gt;<br /> **[[5l74]] – mPLX-A2 extracellular domain segment 4-5&lt;br /&gt;<br /> **[[3ig3]] - mPLX-A3 intracellular domain<br /> **[[4e74]] - hPLX-A4 Rho GTPase-binding domain<br /> **[[5l5k]], [[5l5l]] – mPLX-A4 extracellular domain &lt;br /&gt;<br /> **[[5l5k]] – mPLX-A4 extracellular domain segment 1-10&lt;br /&gt;<br /> **[[5l5l]] – mPLX-A4 extracellular domain segment 1-8&lt;br /&gt;<br /> **[[5l5m]], [[5l5n]] – mPLX-A4 extracellular domain segment 1-7&lt;br /&gt;<br /> **[[7m0r]] – mPLX-A4 + neuropilin + semaphorin - CryoEM&lt;br /&gt;<br /> **[[6fkm]], [[6fkn]] - PLX-A + semaphoring – Drosophila melanogaster&lt;br /&gt;<br /> *Plexin B; Domains – extracellular 19-535; cytoplasmic 1511-2135; effector 1743-1862&lt;br/&gt; <br /> **[[8b3k]] - hPLX-B1 extracellular domain&lt;br /&gt;<br /> **[[2r2o]] – hPLX-B1 effector domain&lt;br /&gt;<br /> **[[2rex]] - hPLX-B1 effector domain + Rho-related GTP-binding protein Rho6&lt;br /&gt;<br /> **[[2jph]] - hPLX-B1 effector domain – NMR&lt;br /&gt;<br /> **[[3ol2]] - hPLX-B1 extracellular domain + semaphorin 4D&lt;br /&gt;<br /> **[[3sua]], [[3su8]] – hPLX-B1 cytoplasmic domain + RAS-related C3 botulinum toxin substrate&lt;br /&gt;<br /> **[[3hm6]] - hPLX-B1 cytoplasmic domain + peptide&lt;br /&gt;<br /> **[[7vf3]], [[7vg7]] - hPLX-B1 extracellular domain + peptide&lt;br /&gt;<br /> **[[5b4w]] - hPLX-B1 extracellular domain + peptide inhibitor&lt;br /&gt;<br /> **[[4e71]] - hPLX-B2 effector domain&lt;br /&gt;<br /> **[[5e6p]] - hPLX-B2 cytoplasmic domain + Rho guanine &lt;br /&gt;nucleotide exchange factor 11&lt;br /&gt;<br /> **[[8bb7]], [[8bf4]] - mPLX-B1 extracellular domain + nanobody&lt;br /&gt;<br /> **[[7kdc]] – mPLX-B2 receptor binding domain 1463-1565 + RhoD&lt;br /&gt;&lt;br/&gt; <br /> *Plexin C&lt;br/&gt; <br /> **[[3kuz]] - hPLX-C1 ubiquitin-like domain&lt;br /&gt;<br /> **[[3nvn]], [[3nvq]] – hPLX-C1 + semaphorin 7A&lt;br /&gt;<br /> **[[6vxk]] - hPLX-C1 + semaphorin-like protein – Cryo EM&lt;br /&gt;<br /> **[[4m8n]] - PLX-C1 intracellular domain + RAP1B – zebra fish&lt;br /&gt;&lt;br/&gt; <br /> *Plexin D&lt;br/&gt; <br /> **[[3h6n]] - hPLX-D1 ubiquitin-like domain&lt;br /&gt;<br /> **[[5v6r]] - mPLX-D1 intracellular domain &lt;br /&gt;<br /> **[[5v6t]] - mPLX-D1 intracellular domain + GIPC1&lt;br /&gt;<br /> }}<br /> [[Category:Topic Page]]<br />  </div>

Openfox https://proteopedia.org/index.php?title=Plexin_3D_structures&diff=4433715 2026-03-29T14:11:00Z

<p>Openfox: Undo revision 4433714 by Openfox (talk)</p> <hr /> <div>{{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}<br /> {{#tree:id=OrganizedByTopic|openlevels=0|<br /> *  <br /> *Plexin A&lt;br&gt; <br /> **[[5l56]], [[5l59]], [[5l5c]] – mPLX-A1 extracellular domain segment 1-10 - mouse&lt;br /&gt;<br /> **[[5l7n]] – mPLX-A1 extracellular domain segment 7-10&lt;br /&gt;<br /> **[[3ryt]] - mPLX-A1 intracellular domain + Ras-related C3 botulinum toxin substrate<br /> **[[7y4p]] - hPLX-A1 extracellular domain 1-4 27-708 - human&lt;br /&gt;<br /> **[[7y4q]] - hPLX-A1 extracellular domain 1-4 + semaphorin&lt;br /&gt;<br /> **[[3q3j]] - hPLX-A2  binding domain + Rho-related GTP-binding protein Rho6 <br /> **[[3al8]], [[3oky]] – mPLX-A2 + semaphorin-6A <br /> **[[4gza]] - mPLX-A2 + semaphorin-3A + neuropilin-1<br /> **[[3al9]] – mPLX-A2 SEMA+PSI domain<br /> **[[3okt]] - mPLX-A2 extracellular domain segment 1-4&lt;br /&gt;<br /> **[[5l5g]] – mPLX-A2 extracellular domain segment 1-8&lt;br /&gt;<br /> **[[5l74]] – mPLX-A2 extracellular domain segment 4-5&lt;br /&gt;<br /> **[[3ig3]] - mPLX-A3 intracellular domain<br /> **[[4e74]] - hPLX-A4 Rho GTPase-binding domain<br /> **[[5l5k]], [[5l5l]] – mPLX-A4 extracellular domain &lt;br /&gt;<br /> **[[5l5k]] – mPLX-A4 extracellular domain segment 1-10&lt;br /&gt;<br /> **[[5l5l]] – mPLX-A4 extracellular domain segment 1-8&lt;br /&gt;<br /> **[[5l5m]], [[5l5n]] – mPLX-A4 extracellular domain segment 1-7&lt;br /&gt;<br /> **[[7m0r]] – mPLX-A4 + neuropilin + semaphorin - CryoEM&lt;br /&gt;<br /> **[[6fkm]], [[6fkn]] - PLX-A + semaphoring – Drosophila melanogaster&lt;br /&gt;<br /> *Plexin B; Domains – extracellular 19-535; cytoplasmic 1511-2135; effector 1743-1862&lt;br&gt; <br /> **[[8b3k]] - hPLX-B1 extracellular domain&lt;br /&gt;<br /> **[[2r2o]] – hPLX-B1 effector domain&lt;br /&gt;<br /> **[[2rex]] - hPLX-B1 effector domain + Rho-related GTP-binding protein Rho6&lt;br /&gt;<br /> **[[2jph]] - hPLX-B1 effector domain – NMR&lt;br /&gt;<br /> **[[3ol2]] - hPLX-B1 extracellular domain + semaphorin 4D&lt;br /&gt;<br /> **[[3sua]], [[3su8]] – hPLX-B1 cytoplasmic domain + RAS-related C3 botulinum toxin substrate&lt;br /&gt;<br /> **[[3hm6]] - hPLX-B1 cytoplasmic domain + peptide&lt;br /&gt;<br /> **[[7vf3]], [[7vg7]] - hPLX-B1 extracellular domain + peptide&lt;br /&gt;<br /> **[[5b4w]] - hPLX-B1 extracellular domain + peptide inhibitor&lt;br /&gt;<br /> **[[4e71]] - hPLX-B2 effector domain&lt;br /&gt;<br /> **[[5e6p]] - hPLX-B2 cytoplasmic domain + Rho guanine &lt;br /&gt;nucleotide exchange factor 11&lt;br /&gt;<br /> **[[8bb7]], [[8bf4]] - mPLX-B1 extracellular domain + nanobody&lt;br /&gt;<br /> **[[7kdc]] – mPLX-B2 receptor binding domain 1463-1565 + RhoD&lt;br /&gt;&lt;br&gt; <br /> *Plexin C&lt;br&gt; <br /> **[[3kuz]] - hPLX-C1 ubiquitin-like domain&lt;br /&gt;<br /> **[[3nvn]], [[3nvq]] – hPLX-C1 + semaphorin 7A&lt;br /&gt;<br /> **[[6vxk]] - hPLX-C1 + semaphorin-like protein – Cryo EM&lt;br /&gt;<br /> **[[4m8n]] - PLX-C1 intracellular domain + RAP1B – zebra fish&lt;br /&gt;&lt;br&gt; <br /> *Plexin D&lt;br&gt; <br /> **[[3h6n]] - hPLX-D1 ubiquitin-like domain&lt;br /&gt;<br /> **[[5v6r]] - mPLX-D1 intracellular domain &lt;br /&gt;<br /> **[[5v6t]] - mPLX-D1 intracellular domain + GIPC1&lt;br /&gt;<br /> }}<br /> [[Category:Topic Page]]<br />  </div>

Openfox https://proteopedia.org/index.php?title=Plexin_3D_structures&diff=4433714 2026-03-29T14:06:43Z

<p>Openfox: Normalize &lt;br/&gt; in #tree blocks</p> <hr /> <div>{{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}<br /> {{#tree:id=OrganizedByTopic|openlevels=0|<br /> *  <br /> *Plexin A&lt;br/&gt; <br /> **[[5l56]], [[5l59]], [[5l5c]] – mPLX-A1 extracellular domain segment 1-10 - mouse&lt;br /&gt;<br /> **[[5l7n]] – mPLX-A1 extracellular domain segment 7-10&lt;br /&gt;<br /> **[[3ryt]] - mPLX-A1 intracellular domain + Ras-related C3 botulinum toxin substrate<br /> **[[7y4p]] - hPLX-A1 extracellular domain 1-4 27-708 - human&lt;br /&gt;<br /> **[[7y4q]] - hPLX-A1 extracellular domain 1-4 + semaphorin&lt;br /&gt;<br /> **[[3q3j]] - hPLX-A2  binding domain + Rho-related GTP-binding protein Rho6 <br /> **[[3al8]], [[3oky]] – mPLX-A2 + semaphorin-6A <br /> **[[4gza]] - mPLX-A2 + semaphorin-3A + neuropilin-1<br /> **[[3al9]] – mPLX-A2 SEMA+PSI domain<br /> **[[3okt]] - mPLX-A2 extracellular domain segment 1-4&lt;br /&gt;<br /> **[[5l5g]] – mPLX-A2 extracellular domain segment 1-8&lt;br /&gt;<br /> **[[5l74]] – mPLX-A2 extracellular domain segment 4-5&lt;br /&gt;<br /> **[[3ig3]] - mPLX-A3 intracellular domain<br /> **[[4e74]] - hPLX-A4 Rho GTPase-binding domain<br /> **[[5l5k]], [[5l5l]] – mPLX-A4 extracellular domain &lt;br /&gt;<br /> **[[5l5k]] – mPLX-A4 extracellular domain segment 1-10&lt;br /&gt;<br /> **[[5l5l]] – mPLX-A4 extracellular domain segment 1-8&lt;br /&gt;<br /> **[[5l5m]], [[5l5n]] – mPLX-A4 extracellular domain segment 1-7&lt;br /&gt;<br /> **[[7m0r]] – mPLX-A4 + neuropilin + semaphorin - CryoEM&lt;br /&gt;<br /> **[[6fkm]], [[6fkn]] - PLX-A + semaphoring – Drosophila melanogaster&lt;br /&gt;<br /> *Plexin B; Domains – extracellular 19-535; cytoplasmic 1511-2135; effector 1743-1862&lt;br/&gt; <br /> **[[8b3k]] - hPLX-B1 extracellular domain&lt;br /&gt;<br /> **[[2r2o]] – hPLX-B1 effector domain&lt;br /&gt;<br /> **[[2rex]] - hPLX-B1 effector domain + Rho-related GTP-binding protein Rho6&lt;br /&gt;<br /> **[[2jph]] - hPLX-B1 effector domain – NMR&lt;br /&gt;<br /> **[[3ol2]] - hPLX-B1 extracellular domain + semaphorin 4D&lt;br /&gt;<br /> **[[3sua]], [[3su8]] – hPLX-B1 cytoplasmic domain + RAS-related C3 botulinum toxin substrate&lt;br /&gt;<br /> **[[3hm6]] - hPLX-B1 cytoplasmic domain + peptide&lt;br /&gt;<br /> **[[7vf3]], [[7vg7]] - hPLX-B1 extracellular domain + peptide&lt;br /&gt;<br /> **[[5b4w]] - hPLX-B1 extracellular domain + peptide inhibitor&lt;br /&gt;<br /> **[[4e71]] - hPLX-B2 effector domain&lt;br /&gt;<br /> **[[5e6p]] - hPLX-B2 cytoplasmic domain + Rho guanine &lt;br /&gt;nucleotide exchange factor 11&lt;br /&gt;<br /> **[[8bb7]], [[8bf4]] - mPLX-B1 extracellular domain + nanobody&lt;br /&gt;<br /> **[[7kdc]] – mPLX-B2 receptor binding domain 1463-1565 + RhoD&lt;br /&gt;&lt;br/&gt; <br /> *Plexin C&lt;br/&gt; <br /> **[[3kuz]] - hPLX-C1 ubiquitin-like domain&lt;br /&gt;<br /> **[[3nvn]], [[3nvq]] – hPLX-C1 + semaphorin 7A&lt;br /&gt;<br /> **[[6vxk]] - hPLX-C1 + semaphorin-like protein – Cryo EM&lt;br /&gt;<br /> **[[4m8n]] - PLX-C1 intracellular domain + RAP1B – zebra fish&lt;br /&gt;&lt;br/&gt; <br /> *Plexin D&lt;br/&gt; <br /> **[[3h6n]] - hPLX-D1 ubiquitin-like domain&lt;br /&gt;<br /> **[[5v6r]] - mPLX-D1 intracellular domain &lt;br /&gt;<br /> **[[5v6t]] - mPLX-D1 intracellular domain + GIPC1&lt;br /&gt;<br /> }}<br /> [[Category:Topic Page]]<br />  </div>

Openfox https://proteopedia.org/index.php?title=Transfer_RNA_(tRNA)&diff=4433713 2026-03-29T14:05:50Z

<p>Openfox: Normalize &lt;br/&gt; in #tree blocks</p> <hr /> <div>'''tRNA''' or transfer RNA plays a key role in translation, the process of synthesizing proteins from amino acids in a sequence specified by information contained in messenger RNA&lt;ref&gt;Biochemistry 5th ed. Berg JM, Tymoczko JL, Stryer L. New York: W H Freeman; 2002. Section 29.1 &quot;Protein Synthesis Requires the Translation of Nucleotide Sequences Into Amino Acid Sequences&quot; retrieved on 10/31/2018 from [https://www.ncbi.nlm.nih.gov/books/NBK22421]&lt;/ref&gt;&lt;ref&gt;Molecular Biology of the Cell. 4th ed. Section &quot;From RNA to Protein&quot; retrieved on 10/31/2018 from [https://www.ncbi.nlm.nih.gov/books/NBK26829/]&lt;/ref&gt;. During this process, triplets of nucleotides (codons) of the messenger RNA are translated according to the genetic code into one of the 20 amino acids. tRNAs serve as the dictionary in this translation process. [[Image:Translation RNA amino acid.png|right|thumb|350px|Translation of RNA sequence into protein sequence]] They contain a specific triplet nucleotide sequence, the anticodon, and they get attached to a specific (cognate) amino acid. During protein synthesis by ribosomes, tRNAs deliver the correct amino acids through interactions of their anticodon region with the complementary codons on the messenger RNA. Apart from their distinct anticodon regions, different tRNAs have very similar structures, allowing them to all fit into the tRNA-binding sites on the ribosome.<br /> <br /> &lt;StructureSection load='' size='350' side='right' scene='43/433638/Fullview_cartoon/20' caption=''&gt;<br /> ==Structure==<br /> [[Image:TRNA phe yeast.png|left|thumb|Standard 2D cloverleaf structure of tRNA. The shown example is phenylalanine-specific tRNA from yeast]]tRNA is a stable, folded type of RNA present in all living cells. The secondary structure of most tRNA&lt;ref&gt;PMID:4601792&lt;/ref&gt;&lt;ref&gt;PMID:4612535&lt;/ref&gt; is composed of four helical stems (shown in cyan, blue, red and yellow) arranged in a cloverleaf structure and an central four-way junction. &lt;scene name='43/433638/Wireframe/5'&gt;In three dimensions&lt;/scene&gt;, tRNA adopts an &quot;L&quot; shape, with the acceptor end &lt;jmol&gt;<br /> &lt;jmolLink&gt;<br /> &lt;script&gt; select 73-76; selectionHalos ON; delay 0.5; selectionHalos OFF;<br /> &lt;/script&gt;<br /> &lt;text&gt;(⚞⚟)&lt;/text&gt;<br /> &lt;/jmolLink&gt;<br /> &lt;/jmol&gt; on one end and the anticodon &lt;jmol&gt;<br /> &lt;jmolLink&gt;<br /> &lt;script&gt; select 34-36 and sidechain; color cpk; select 34-36; spacefill on; delay 0.5; spacefill off;<br /> &lt;/script&gt;<br /> &lt;text&gt;(⚞⚟)&lt;/text&gt;<br /> &lt;/jmolLink&gt;<br /> &lt;/jmol&gt; on the other end. <br /> At the acceptor end, amino acid are attached via the &lt;scene name='43/433638/Threeprime/3'&gt;2'-OH or 3'-OH group of the last nucleotide in the acceptor stem&lt;/scene&gt;. At the opposite end of the molecule is the &lt;scene name='43/433638/Anticodon_loop/1'&gt;anticodon&lt;/scene&gt;, which pairs with its complementary codon on the messenger RNA. <br /> <br /> The two arms of the &quot;L&quot; &lt;scene name='43/433638/Fullview_cartoon/20'&gt; (cartoon)&lt;/scene&gt; are formed by the &lt;scene name='43/433638/Stemstacking/3'&gt;stacking of the acceptor and TΨC-stem&lt;/scene&gt; on one side, and of the anticodon and D-stem on the other side. &lt;scene name='43/433638/Kissing/4'&gt;Tertiary interactions between the TΨC- and D-loop&lt;/scene&gt; form the corner of the L-shape and stabilize the structure. Non-Watson-Crick hydrogen bonding is important in this core (visualize interactively at [http://jmol.x3dna.org/ DSSR Jmol web interface)]).<br /> In addition to the four stem loops, tRNA have a variable loop located in between the acceptor and D-stems. This variable loop can be quite small, but for some tRNA such as the serine or leucine-specific tRNA, it can form an additional helix. <br /> <br /> '''Modified nucleotides.''' Most tRNAs contain modified nucleotides&lt;ref&gt;PMID:20459084&lt;/ref&gt;, which are added post-transcriptionally by specific enzymes. Common modifications include isomerisation of uridines into [[Pseudouridine|pseudouridines]] (Ψ), methylation of either the ribose and/or the base, thiolation, reduction of uridines into dihydrouridines (D). <br /> [[Image:Pseudouridine.png|center|350px]]<br /> The anticodon loop of the tRNA quite often contains hypermodified bases, the function of which is to stabilize the codon-anticodon interaction within the ribosome. The nature and position of nucleotide modifications is both specific of the organism and the tRNA type. Common modified nucleotides include: <br /> * 5-methyluridine (ribothymidine) at position 54 <br /> * &lt;scene name='43/433638/Pseudouridine/3'&gt;pseudouridine at position 55&lt;/scene&gt; (note the carbon-carbon bond &lt;jmol&gt;&lt;jmolLink&gt;<br /> &lt;script&gt; select 55 and (*.C5, *.C1*);wireframe 0.3; color bonds cyan; delay 1.2;wireframe 0.14;color bonds none;<br /> &lt;/script&gt;<br /> &lt;text&gt;(⚟)&lt;/text&gt;<br /> &lt;/jmolLink&gt;<br /> &lt;/jmol&gt; connecting sugar and base)<br /> * dihydrouridine(s) in the D-loop <br /> * 7-methylguanosine at position 46 <br /> <br /> See also [[Transfer RNA tour]].<br /> <br /> <br /> ==Function==<br /> Cells usually have sets of tRNAs corresponding to all 20 standard amino acids, with anticodons capable of pairing with the 61 &quot;sense&quot; or coding codons. Within the cell, each tRNA undergoes an aminoacylation-deacylation cycle. tRNA are attached to their cognate amino acid ('charged with' or 'aminoacylated') by a family of enzymes called [[Aminoacyl tRNA Synthetase]]s. Charged tRNA associate with the elongation factor EF-Tu (bacteria) or EF1 (eukaryotes) complexed to GTP. These ternary complexes bind to the ribosome. If codon and anticodon are complementary, translation can proceed, the amino acid is incorporated at the C-terminal end of the polypetide chain and eventually, the deacylated tRNA is release for another aminoacylation-deacylation cycle. <br /> <br /> <br /> '''Interaction with ribosomes and mRNA.''' Ribosomes have multiple &lt;scene name='43/433638/Ribosome/3'&gt;binding sites for tRNA&lt;/scene&gt;. During protein synthesis, the partially synthesized protein is always covalently attached to a tRNA bound to the ribosome. When a new tRNA charged with a single amino acid binds to the ribosome, the partially synthesized (nascent) protein is transferred onto the new amino acid bound to the incoming tRNA (the ester bond between nascent protein and tRNA is broken and a new peptide bond between nascent protein and the new amino acid is formed), elongating the nascent protein by one amino acid. This chemistry happens at the 3’-OH of the acceptor stem of tRNA. The other end of tRNA has a role in selecting the correct tRNA (charged with the correct amino acid) through interactions between the anticodon loop at the other end of tRNA with codons on the messenger RNA bound to the ribosome and presented to the tRNA.<br /> <br /> There are special mechanisms to get protein synthesis started (initiation), and to end it (termination). Initiator tRNA is a Met-tRNA which recognizes the methionine codon which is the initial codon in protein synthesis. Initiator-tRNA differs from the protein elongation Met-tRNA by forming a complex with IF-2 and GTP, by bonding to the ribosomal P-site and exclusion from bonding to the ribosomal A-site.<br /> <br /> <br /> '''Aminoacylation.''' Aminoacyl tRNA Synthetases pair amino acids with tRNAs. In this way, they implement the genetic code. These enzymes recognize a single tRNA (e.g. phe-tRNA) and a single amino acid (phenylalanine, in this example) and catalyze formation of an ester bond between the 3’-hydroxyl of the tRNA and the carboxylatic acid of the amino acid.<br /> &lt;scene name='43/433638/Cv/4'&gt;Glutaminyl-tRNA synthetase/tRNA complex (1gtr)&lt;/scene&gt;. The cognate aminoacid is esterified on its 3'-OH by the cognate aminoacyl-tRNA synthetase. The synthetase recognizes structural features on the tRNA, which allows it to discriminate tRNA that are specific for a given aminoacid, from all other (non-cognate) tRNA. These structural features are called identity determinants. They are often (but not exclusively) located in the anticodon sequence and/or in the so-called discriminator base (position 73), just before the 3' -CCA terminus. <br /> <br /> &lt;/StructureSection&gt;<br /> <br /> __NOTOC__<br /> ==3D Structures of tRNA==<br /> Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}<br /> {{#tree:id=OrganizedByTopic|openlevels=0|<br /> *Ala-tRNA<br /> **[[3wqy]], [[3wqz]] – AfRNA + Ala-tRNA synthetase – ''Archaeoglobus fulgidus''&lt;br /&gt;<br /> *Arg-tRNA<br /> **[[1f7u]], [[1f7v]] – yRNA + Arg-tRNA synthetase + Arg - yeast&lt;br /&gt;<br /> **[[2zuf]] – PhRNA + Arg-tRNA synthetase - ''Pyrococcus horikoshii''&lt;br /&gt;<br /> **[[2zue]] – PhRNA + Arg-tRNA synthetase + ATP analog&lt;br /&gt;<br /> **[[4x4n]], [[4x4p]], [[4x4t]], [[4x4u]] – AfRNA minihelix + CCA adding enzyme &lt;br /&gt;<br /> **[[4x4o]], [[4x4q]], [[4x4r]], [[4x4s]], [[4x4v]] – AfRNA minihelix + CCA adding enzyme + nucleotide&lt;br /&gt;<br /> **[[5b63]] – EcRNA + Arg-tRNA synthetase - ''Escherichia coli''&lt;br /&gt;<br /> *Asn-tRNA<br /> **[[3kfu]] – TtRNA + Glu-tRNA amidotransferase – ''Thermus thermophilus'' &lt;br /&gt;<br /> **[[4wj4]] – PaRNA + Asp-tRNA synthetase + Asp - ''Pseudomonas aeruginosa'' &lt;br /&gt;<br /> **[[4wj3]] – PaRNA + Asp-tRNA synthetase + glutamyl-tRNA amidotransferase &lt;br /&gt;<br /> *Asp-tRNA&lt;br/&gt;''<br /> **[[1eqr]] – EcRNA – ''Escherichia coli'' &lt;br /&gt;<br /> **[[1vtq]] – yRNA &lt;br /&gt;<br /> **[[1asy]], [[1asz]] – yRNA + Asp-tRNA synthetase &lt;br /&gt;<br /> **[[1efw]] – EcRNA + Asp-tRNA synthetase &lt;br /&gt;<br /> **[[1c0a]] – EcRNA + Asp-tRNA synthetase + Asp-AMP&lt;br /&gt;<br /> **[[1il2]] – yRNA + Asp-tRNA synthetase + Asp-AMP&lt;br /&gt;<br /> *Cys-tRNA<br /> **[[1u0b]] – EcRNA + Cys-tRNA synthetase &lt;br /&gt;<br /> **[[2du3]], [[2du4]], [[2du5]], [[2du6]] – AfRNA + phosphoSer-tRNA synthetase &lt;br /&gt;<br /> **[[2zzn]] – MjRNA + ATRM5 - ''Methanococcus jannaschii'' &lt;br /&gt;<br /> *Sec-tRNA (selenocysteine-tRNA)<br /> **[[3rg5]] – RNA – mouse&lt;br /&gt;<br /> **[[3a3a]] – hRNA – human&lt;br /&gt;<br /> **[[3hl2]], [[4zdo]], [[4zdp]] – hRNA + phosphoSer-tRNA synthetase &lt;br /&gt;<br /> **[[4rqe]], [[4rqf]] – hRNA + Ser-tRNA synthetase &lt;br /&gt;<br /> **[[3adb]], [[3adc]], [[3add]] – MjRNA + phosphoSer-tRNA synthetase + AMPPNP&lt;br /&gt;<br /> **[[3w3s]] – AaRNA + Ser-tRNA synthetase - ''Aquifex aeolicus'' &lt;br /&gt;<br /> **[[3w1k]] – EcRNA + Sec-tRNA synthetase &lt;br /&gt;<br /> *Glu-tRNA<br /> **[[1gtr]], [[1gts]] – EcRNA + Glu-tRNA synthetase &lt;br /&gt;<br /> **[[1g59]] – TtRNA + Glu-tRNA synthetase &lt;br /&gt;<br /> **[[1n77]] – TtRNA + Glu-tRNA synthetase + ATP&lt;br /&gt;<br /> **[[2cv0]] – TtRNA + Glu-tRNA synthetase + Glu&lt;br /&gt;<br /> **[[2cv2]] – TtRNA + Glu-tRNA synthetase + Glu-AMS&lt;br /&gt;<br /> **[[2cv1]] – TtRNA + Glu-tRNA synthetase + ATP + Glu&lt;br /&gt;<br /> **[[1n78]], [[2dxi]] – TtRNA + Glu-tRNA synthetase + glutamol-ATP&lt;br /&gt;<br /> **[[2d6f]] – RNA + Glu-tRNA amidotransferase – ''Methanothermobacter thermautotrophicus''&lt;br /&gt;<br /> **[[2der]], [[2det]], [[2deu]] – EcRNA + MNMA &lt;br /&gt;<br /> **[[5hr6]], [[5hr7]] – EcRNA + RLMN &lt;br /&gt;<br /> *Gln-tRNA<br /> **[[1qrs]], [[1qrt]], [[1qru]], [[1qtq]], [[1exd]], [[1euq]], [[1euy]] – EcRNA + Gln-tRNA synthetase &lt;br /&gt;<br /> **[[1zjw]] – EcRNA + Gln-tRNA synthetase + Gln&lt;br /&gt;<br /> **[[4jxx]], [[4jxz]], [[4jyz]] – EcRNA + Gln-tRNA synthetase + ATP&lt;br /&gt;<br /> **[[3akz]] – TmRNA + Gln-tRNA synthetase + Glu-AMP – ''Thermotoga maritima''&lt;br /&gt;<br /> **[[3al0]] - TmRNA + Glu-tRNA amidotransferase&lt;br /&gt;<br /> *Gly-tRNA<br /> **[[4mgm]] – GkRNA – ''Geobacillus kaustophilus''&lt;br /&gt;<br /> **[[4mgn]] – GkRNA + T-box riboswitch&lt;br /&gt;<br /> **[[4lck]], [[4tzp]], [[4tzv]], [[4tzw]] – BsRNA + ribosomal protein YBXF + T-box riboswitch – ''Bacillus subtilis''&lt;br /&gt;<br /> **[[4kr2]], [[4kr3]], [[4e6m]] – hRNA + Gly-tRNA synthetase &lt;br /&gt;<br /> *His-tRNA<br /> **[[3wc1]], [[3wc2]] – RNA + His-tRNA-specific guanylyltransferase – ''Candida albicans''&lt;br /&gt;<br /> **[[4rdx]] – TtRNA + His-tRNA synthetase &lt;br /&gt;<br /> *Ile-tRNA<br /> **[[1qu2]], [[1qu3]], [[1ffy]] – RNA + Ile-tRNA synthetase – ''Staphylococcus aureus''&lt;br /&gt;<br /> **[[3a2k]] – GkRNA + Ile-tRNA synthetase &lt;br /&gt;<br /> *Leu-tRNA<br /> **[[1wz2]] – PhRNA + Leu-tRNA synthetase &lt;br /&gt;<br /> **[[2bte]], [[2byt]] – TtRNA + Leu-tRNA synthase &lt;br /&gt;<br /> **[[2v0g]] – TtRNA + Leu-tRNA synthase + antifungal agent&lt;br /&gt;<br /> **[[2nqp]], [[2nr0]], [[2nre]] – EcRNA + tRNA pseudouridine synthase &lt;br /&gt;<br /> **[[4aq7]], [[4cqn]] – EcRNA + Leu-tRNA synthetase + Leu-AMP&lt;br /&gt;<br /> **[[4arc]] – EcRNA + Leu-tRNA synthetase + Leu&lt;br /&gt;<br /> **[[4ari]], [[4as1]], [[3zjt]], [[3zju]], [[3zjv]] – EcRNA + Leu-tRNA synthetase + benzoxarborole&lt;br /&gt;<br /> **[[3zgz]] – EcRNA + Leu-tRNA synthetase + agrocin&lt;br /&gt;<br /> **[[2zzm]] – MjRNA + ATRM5 &lt;br /&gt;<br /> **[[3j5y]], [[3j5s]] – hRNA + ERF1 + ERF3A + mRNA &lt;br /&gt;<br /> **[[5ah5]] – RNA + Leu-tRNA synthetase + Leu-AMS – ''Agrobacterium radiobacter''&lt;br /&gt;<br /> *Lys-tRNA<br /> **[[1fir]] – bRNA primer - bovine&lt;br /&gt;<br /> **[[1krs]], [[1krt]] – EcRNA - NMR&lt;br /&gt;<br /> **[[5ccx]] – hRNA + tRNA methyltransferase &lt;br /&gt;<br /> **[[5ccb]], [[5cd1]] – hRNA + tRNA methyltransferase + SAH&lt;br /&gt;<br /> *PyroLys-tRNA<br /> **[[2zni]] – RNA + PyrLys-tRNA synthetase – ''Desulfitobacterium hafniense''&lt;br /&gt;<br /> *Met-tRNA<br /> **[[2csx]] – AaRNA + Met-tRNA synthetase &lt;br /&gt;<br /> *Phe-tRNA<br /> **[[1ehz]], [[4tna]], [[6tna]], [[1tra]], [[1tn2]], [[1tn1]], [[1fcw]] – yRNA &lt;br /&gt;<br /> **[[1eiy]], [[2iy5]], [[3tup]] – TtRNA + Phe-tRNA synthetase &lt;br /&gt;<br /> **[[2iy5]] – TtRNA + Phe-tRNA synthetase + Phe-AMP&lt;br /&gt;<br /> **[[3tup]] – hRNA + Phe-tRNA synthetase &lt;br /&gt;<br /> **[[3foz]], [[2zm5]] – EcRNA + tRNA isopentenyltransferase&lt;br /&gt;<br /> **[[2zxu]] – EcRNA + tRNA isopentenyltransferase + DMASPP&lt;br /&gt;<br /> **[[4yco]] – EcRNA + tRNA dihydrouridine synthetase &lt;br /&gt;<br /> **[[3q1q]], [[3q1r]] – TmRNA + RNase &lt;br /&gt;<br /> **[[3izy]] – bRNA + IF-2&lt;br /&gt;<br /> *Pro-tRNA<br /> **[[1h4s]] – TtRNA + Pro-tRNA synthetase + ATP &lt;br /&gt;<br /> **[[1h4q]] – TtRNA + Pro-tRNA synthetase + ATP + prolinol&lt;br /&gt;<br /> *Ser-tRNA<br /> **[[1ser]] – TtRNA + Ser-tRNA synthetase &lt;br /&gt;<br /> *Thr-tRNA<br /> **[[1qf6]] – EcRNA + Thr-tRNA synthetase &lt;br /&gt;<br /> **[[2fk6]], [[4gcw]] – BsRNA + RNase &lt;br /&gt;<br /> **[[4yye]] – yRNA + Thr-tRNA synthetase + Thr-AMP&lt;br /&gt;<br /> *Trp-tRNA<br /> **[[2ake]] – bRNA + Trp-tRNA synthetase &lt;br /&gt;<br /> **[[2dr2]] – hRNA + Trp-tRNA synthetase &lt;br /&gt;<br /> **[[4ycp]] – EcRNA + tRNA dihydrouridine synthetase &lt;br /&gt;<br /> *Tyr-tRNA<br /> **[[1h3e]] – TtRNA + Tyr-tRNA synthetase + ATP + tyrosinol&lt;br /&gt;<br /> **[[1j1u]] – MjRNA + Tyr-tRNA synthetase + tyrosine &lt;br /&gt;<br /> **[[2dlc]] – yRNA + Tyr-tRNA synthetase + Tyr-AMP&lt;br /&gt;<br /> *Val-tRNA<br /> **[[1gax]], [[1ivs]] – TtRNA + Val-tRNA synthetase + Val-AMP&lt;br /&gt;<br /> **[[1j2b]] – PhRNA + tRNA guanine transglycosylate &lt;br /&gt;<br /> *Initiator tRNA (Formyl-methionine-tRNA)<br /> **[[3cw5]], [[3cw6]] – EcRNA &lt;br /&gt;<br /> **[[1yfg]] – yRNA &lt;br /&gt;<br /> **[[2fmt]] – yRNA + methionyl-tRNAfMet formyltransferase&lt;br /&gt;<br /> **[[1qvf]] – HmRNA – ''Haloarcula marismortui''&lt;br /&gt;<br /> **[[3qsy]] – SsRNA + IF-2 – ''Sulfolobus solfataricus''&lt;br /&gt;<br /> **[[3v11]] – SsRNA + IF-2 + GDPNP&lt;br /&gt;<br /> *tRNA<br /> **[[2dr7]], [[2dr9]], [[2drb]], [[2zh3]], [[2zh4]], [[2zh5]], [[2zh7]], [[2zh8]], [[2zh9]], [[2zhb]], [[3ouy]], [[3ov7]], [[3ova]], [[3ovb]], [[3ovs]] – RNA 33-mer + CCA adding enzyme &lt;br /&gt;<br /> **[[2dr8]], [[2dra]], [[2zh1]], [[2zh2]], [[2zh6]], [[2zha]] – RNA 33-mer + CCA adding enzyme + nucleotide&lt;br /&gt;<br /> **[[3eph]], [[3epj]], [[3epk]], [[3epl]] – RNA + ytRNA isopentenyltransferase&lt;br /&gt;<br /> **[[3b0v]] – TtRNA + tRNA dihydrouridine synthetase &lt;br /&gt;<br /> **[[4yvi]], [[4yvj]], [[4yvk]] – RNA + tRNA methyltransferase + sinefungin – ''Haemophilus influenzae''&lt;br /&gt;<br /> *tRNA in the ribosome<br /> **[[4v9c]], [[486d]], [[1mj1]], [[1ml5]], [[1pn7]], [[1pn8]], [[1zo1]], [[1zo3]], [[3deg]], [[3ep2]], [[3eq3]], [[3eq4]], [[3j46]], [[4v49]], [[4v4v]], [[4v4w]], [[4v50]], [[4v5h]], [[4v69]], [[4v6d]], [[4v6e]], [[4v6k]], [[4v6l]], [[4v6n]], [[4v6o]], [[4v6p]], [[4v6q]], [[4v6r]], [[4v6s]], [[4v6v]], [[4v6y]], [[4v6z]], [[4v70]], [[4v71]], [[4v72]], [[4v73]], [[4v74]], [[4v75]], [[4v76]], [[4v77]], [[4v78]], [[4v79]], [[4v7a]], [[4v7c]], [[4v7d]], [[4v9c]], [[3j7z]], [[3j9z]], [[3ja1]], [[4woi]], [[5gad]], [[5gae]], [[5gag]], [[5gah]], [[5gaf]] – EcRNA &lt;br /&gt;<br /> **[[1jgo]], [[1jgp]], [[1jgq]], [[1xnq]], [[1xnr]], [[2om7]], [[3t1h]], [[3t1y]], [[4gkj]], [[4gkk]], [[4jv5]], [[4jya]], [[4v42]], [[4v48]], [[4v4i]], [[4v4j]], [[4v4p]], [[4v4r]], [[4v4s]], [[4v4t]], [[4v4x]], [[4v4y]], [[4v4z]], [[4v51]], [[4v5a]], [[4v5c]], [[4v5d]], [[4v5e]], [[4v5f]], [[4v5g]], [[4v5j]], [[4v5k]], [[4v5l]], [[4v5m]], [[4v5n]], [[4v5p]], [[4v5q]], [[4v5r]], [[4v5s]], [[4v63]], [[4v67]], [[4v68]], [[4v6a]], [[4v6f]], [[4v6g]], [[4v7l]], [[4v7m]], [[4v7p]], [[4v87]], [[4v8b]], [[4v8c]], [[4v8d]], [[4v8e]], [[4v8f]], [[4v8j]], [[4v8n]], [[4v8o]], [[4v8q]], [[4v95]], [[4v97]], [[4v9a]], [[4v9b]], [[4v9h]], [[4v9i]], [[4v9j]], [[4v9n]], [[4v9q]], [[4v9r]], [[4v9s]], [[1vvj]], [[4l47]], [[4l71]], [[4lel]], [[4lfz]], [[4lnt]], [[4lsk]], [[4lt8]], [[4p70]], [[1vy4]], [[1vy5]], [[1vy6]], [[1vy7]], [[4p6f]], [[4w29]], [[4w2e]], [[4w2f]], [[4w2g]], [[4w2h]], [[4w2i]], [[4wt8]], [[4wpo]], [[4wqf]], [[4wqu]], [[4wqy]], [[4y4p]], [[4tua]], [[4tub]], [[4tuc]], [[4tud]], [[4tue]], [[4z8c]], [[4zer]], [[4z3s]], [[4wq1]], [[4wqr]], [[4wr6]], [[4wra]], [[4wro]], [[4wsd]], [[4wsm]], [[4wt1]], [[4wu1]], [[4wzd]], [[4wzo]], [[5aa0]], [[5d8b]], [[4w4g]], [[4ypb]], [[4yzv]], [[5doy]], [[5e7k]], [[5e81]], [[5el4]], [[5el5]] – TtRNA &lt;br /&gt;<br /> **[[1njm]], [[1njp]] – RNA – ''Deinococcus radiodurans''&lt;br /&gt;<br /> **[[1qvf]] – HmRNA &lt;br /&gt;<br /> **[[3j0l]], [[3j0o]], [[3j0p]], [[3j0q]], [[4uje]], [[4ujc]], [[4ujd]], [[3j92]], [[3jaj]], [[3jan]], [[3jag]], [[3jah]], [[3jai]] – RNA – rabbit&lt;br /&gt;<br /> **[[3j16]], [[3j6b]], [[4v6i]], [[4v8y]], [[4v8z]], [[5gak]] – yRNA &lt;br /&gt;<br /> **[[4v4n]] – MjRNA &lt;br /&gt;<br /> **[[4v5z]] – RNA - dog&lt;br /&gt;<br /> **[[4v6u]] – RNA – ''Pyrococcus furiosuso''&lt;br /&gt;<br /> **[[4v6w]] – RNA – ''Drosophila melanogaster''&lt;br /&gt;<br /> **[[4v6x]], [[3j7y]], [[3j9m]], [[4ug0]], [[5a8l]] – hRNA &lt;br /&gt;<br /> **[[4v7e]] – RNA - wheat&lt;br /&gt;<br /> **[[4v7h]] – RNA - ''Thermomyces lanuginosus''&lt;br /&gt;<br /> **[[4v8m]] – RNA – ''Trypanosoma brucei''&lt;br /&gt;<br /> **[[3j7a]], [[3jbn]], [[3jbo]], [[3jbp]] – RNA – ''Plasmodium falciparum''&lt;br /&gt;<br /> **[[3j7r]], [[4v19]], [[5aj3]], [[5aj4]] – RNA - pig&lt;br /&gt;<br /> **[[4wj3]] – PaRNA &lt;br /&gt;<br /> **[[3j9w]] – BsRNA &lt;br /&gt;<br /> **[[3jbu]] – RNA - ''Bolitoglossa''&lt;br /&gt;<br /> }}<br /> ==See Also==<br /> * [[Translation]]<br /> * [[Ribosome]]<br /> * [[Pseudouridine]]<br /> * [[2czj|tmRNA]]<br /> * [[Aminoacyl tRNA Synthetase]]<br /> ==References==<br /> &lt;references/&gt;<br /> <br /> ==Reference for the structure==<br /> &lt;ref group=&quot;xtra&quot;&gt;PMID:10943889&lt;/ref&gt;<br /> &lt;references group=&quot;xtra&quot;/&gt;<br /> <br /> <br /> [[Category: Trna]]<br /> [[Category: Topic Page]]<br /> [[Category: Translation]]<br /> [[Category: Modification]]<br /> [[Category: RNA]]<br /> [[Category: amino acid]]</div>

Openfox https://proteopedia.org/index.php?title=Beta-lactamase_3D_structures&diff=4433712 2026-03-29T10:39:22Z

<p>Openfox: Fix TreeAndMenu broken list structure</p> <hr /> <div>== 3D Structures of Beta-lactamase ==<br /> <br /> Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}<br /> {{#tree:id=OrganizedByTopic|openlevels=0|<br /> *β-lactamase class A<br /> **[[1btl]], [[1iys]], [[1xpb]], [[1zg4]], [[4gku]], [[4rva]], [[5npo]], [[7u6q]], [[8gii]] - EcBlac A Tem-1- ''Escherichia coli''<br /> **[[1bza]], [[1ck3]], [[1esu]], [[1jwp]], [[1lhy]], [[1li0]], [[1m40]], [[1zg6]], [[2v1z]], [[2v20]], [[3cmz]], [[3jyi]], [[3dtm]], [[4ibr]], [[4ibx]], [[4mez]], [[4rx2]], [[4rx3]], [[6b2n]], [[5kpu]], [[5iq8]], [[5i63]], [[5i52]], [[5hw5]], [[5hw1]], [[5hvi]], [[6ayk]], [[6apa]], [[8ddz]], [[8gij]], [[8rqu]] - EcBlac A Tem-1 (mutant) <br /> **[[4r4s]], [[4r4r]], [[4qy6]], [[4qy5]] - EcBlac A Tem-1/PSE-4&lt;br /&gt;<br /> **[[8di7]] - EcBlac A CMY-2&lt;br /&gt;<br /> **[[1lhy]] - EcBlac A Tem-30 (mutant) <br /> **[[1li0]] - EcBlac A Tem-32 (mutant) <br /> **[[1li9]] - EcBlac A Tem-34 (mutant) <br /> **[[1yt4]] - EcBlac A Tem-76 (mutant) <br /> **[[3toi]] - EcBlac A Tem-116 (mutant)<br /> **[[7qor]] – EcBlac Tem-171 &lt;br /&gt;<br /> **[[5chu]], [[5cgs]] – EcBlac FOX-4&lt;br /&gt;<br /> **[[5cgw]] – EcBlac FOX-4 (mutant)&lt;br /&gt;<br /> **[[4zj2]], [[4zj1]] – EcBlac Tem (mutant) &lt;br /&gt;<br /> **[[4id4]] – EcBlac/PaBlac Tem&lt;br /&gt;<br /> **[[1o7e]], [[1n4o]], [[5ne2]], [[7uhr]], [[7uhs]], [[7uht]], [[8iso]] – StmBlac A – ''Stenotrophonas maltophilia''<br /> **[[1htz]] – KpBlac A Tem-52 – ''Klebsiella pneumoniae''<br /> **[[1shv]], [[4fh4]], [[4fcf]], [[4jpm]] - KpBlac A Shv-1<br /> **[[1tdl]], [[2a3u]], [[3oph]], [[3opl]], [[3v50]], [[3v5m]], [[4fd8]] - KpBlac A Shv-1 (mutant) <br /> **[[1n9b]] – KpBlac A Shv-2<br /> **[[6nfd]] - KpBlac A Shv-11 (mutant) &lt;br /&gt;<br /> **[[5haq]], [[5hap]] - KpBlac A (mutant) &lt;br /&gt;<br /> **[[1hzo]] – Blac A – ''Proteus vulgaris''<br /> **[[1kge]], [[1kgf]], [[1kgg]], [[1ome]] – SaBlac A (mutant) - ''Staphylococcus aureus''<br /> **[[3blm]] – SaBlac A<br /> **[[1mbl]], [[3ly3]], [[3soi]], [[4n92]], [[5ghx]], [[5zfl]] – BlBlac A (mutant) – ''Bacillus licheniformis''<br /> **[[2blm]], [[3sh7]] – BlBlac A<br /> **[[2cc1]] – Blac A – ''Mycobacterium fortuitum''<br /> **[[3bfd]], [[3bfe]] – CsBlac A Sed-1 (mutant) - ''Citrobacter sedlakii''<br /> **[[3s4x]], [[5har]], [[5hai]] - EncBlac A (mutant) – ''Enterobacter cloacae''&lt;br /&gt;<br /> **[[3zdj]], [[4b88]] – Blac – precambrian&lt;br /&gt;<br /> **[[4c6y]], [[4c75]], [[5fqm]], [[6tww]], [[6txd]], [[6ty6]], [[6yrs]] – Blac – synthetic&lt;br /&gt;<br /> **[[5tfq]] – Blac – ''Bacterioides cellulosilyticus''&lt;br /&gt;<br /> **[[5glc]], [[5gla]], [[5gl9]] - BtBlac A - ''Burkholderia thailandensis''&lt;br /&gt;<br /> **[[6afm]], [[6afo]] - BtBlac A (mutant)&lt;br /&gt;<br /> **[[4yfm]] – Blac – ''Mycobacterium abscessus''&lt;br /&gt;<br /> **[[6ni1]] – BsBlac A – ''Bacillus subtilis''&lt;br /&gt;<br /> **[[6niq]] – Blac A – ''Rhodopseudomonas palustris''&lt;br /&gt;<br /> **[[6nj1]] – Blac A – ''Clostridium kluyveri''&lt;br /&gt;<br /> **[[6b6a]], [[6b6b]], [[6b69]], [[6b68]], [[6b5x]], [[6n14]], [[8gcs]], [[8gcv]], [[8rg2]] – MtBlac – ''Mycobacterium tuberculosis''&lt;br /&gt;<br /> **[[8oe1]], [[8oe5]], [[8rii]] - MtBlac A (mutant)&lt;br /&gt;<br /> **[[6v6n]] - Blac A (mutant) – ''Agrobacterium tumefaciens'' &lt;br /&gt;<br /> **[[6w34]] – BcBlac A (mutant) - ''Bacillus cereus''&lt;br /&gt;<br /> **[[6wip]] – Blac A – ''Micromonospora aurantiaca''&lt;br /&gt;<br /> **[[6l3s]] – MmBlac Imp-27 – ''Morganella morganii''&lt;br /&gt;<br /> **[[9bzn]] – BbBlac A – ''Bordetella bronchiseptica''&lt;br /&gt;<br /> **[[8j6y]], [[8sdl]] - PaBlac A - ''Pseudomonas aeruginosa'' &lt;br /&gt;<br /> **[[8sdn]] - PaBlac A (mutant)&lt;br /&gt;<br /> **[[8qnn]] – Blac A – ''Nocardia cyriacigeorgica''&lt;br /&gt;<br /> **[[8iwv]] – YeBlac A – ''Yersinia enterocolitica''&lt;br /&gt;<br /> *β-lactamase class A binary complex<br /> **[[1axb]], [[5ksc]] - EcBlac A (mutant) + transition state analog&lt;br /&gt;<br /> **[[5ujo]] - EcBlac A (mutant) + organometallics&lt;br /&gt;<br /> **[[5fa7]] - EcBlac A + inhibitor&lt;br /&gt;<br /> **[[1nxy]], [[1ny0]], [[1nym]], [[1nyy]], [[8sds]] - EcBlac A (mutant) + boronic acid inhibitor&lt;br /&gt;<br /> **[[8de0]] - EcBlac A Tem-1 + drug&lt;br /&gt;<br /> **[[8de1]], [[8de2]] - EcBlac A Tem-1 (mutant) + drug&lt;br /&gt;<br /> **[[1pzo]], [[1pzp]] - EcBlac A Tem-1 (mutant) + inhibitor&lt;br /&gt;<br /> **[[1erm]], [[1ero]], [[1erq]] – EcBlac A Tem-1 + boronic acid inhibitor&lt;br /&gt;<br /> **[[1jwv]], [[1jwz]] - EcBlac A Tem-1 (mutant) + boronic acid inhibitor&lt;br /&gt;<br /> **[[1ong]], [[1q2p]], [[1vm1]], [[2h5s]], [[2zd8]], [[3d4f]], [[3mke]], [[3mkf]], [[3mxr]], [[3mxs]], [[4fh2]], [[4gd6]], [[4gd8]], [[4gdb]], [[4mbf]], [[4r3b]], [[5ee8]], [[4zam]] - KpBlac A Shv-1 + inhibitor&lt;br /&gt;<br /> **[[1rcj]], [[1tdg]], [[2a49]], [[2h0t]], [[2h0y]], [[2h10]], [[4mbh]], [[4mbk]] - KpBlac A Shv-1 (mutant) + inhibitor&lt;br /&gt;<br /> **[[5t66]], [[5zyb]] - KpBlac A + boronic acid inhibitor&lt;br /&gt;<br /> **[[1w7f]], [[3b3x]], [[2y91]], [[4a5r]] - BlBlac A + inhibitor&lt;br /&gt;<br /> **[[3m2j]], [[4n9k]], [[4n9l]] - BlBlac A (mutant) + inhibitor&lt;br /&gt;<br /> **[[4m3k]], [[4n1h]], [[5lwf]] - BlBlac A + antibody&lt;br /&gt;<br /> **[[2q9m]], [[2q9n]] - EncBlac A + inhibitor &lt;br /&gt;<br /> **[[3bfc]], [[3bff]], [[3bfg]] – CsBlac A Sed-1 (mutant) + inhibitor&lt;br /&gt; <br /> **[[3nia]] - PaBlac A Ges-2 + inhibitor &lt;br /&gt;<br /> **[[6q35]], [[8sdv]] - PaBlac A Ges-5 + boronic acid inhibitor &lt;br /&gt;<br /> **[[3p98]] – MmBlac Tem-72 + citrate &lt;br /&gt;<br /> **[[5tg7]], [[5tg6]], [[5tg5]], [[5tg4]] - AbBlac A + boronic acid inhibitor&lt;br /&gt;<br /> **[[5gld]], [[5glb]] - BtBlac A + boronic acid inhibitor &lt;br /&gt;<br /> **[[6afn]], [[6afp]] - BtBlac A (mutant) + boronic acid inhibitor &lt;br /&gt;<br /> **[[5ne1]] - StmBlac A + boronic acid inhibitor &lt;br /&gt;<br /> **[[6qw7]], [[6qw8]], [[7bj8]] - StmBlac A + inhibitor &lt;br /&gt;<br /> **[[6w2z]] - BsBlac A + inhibitor &lt;br /&gt;<br /> **[[6w33]] – BcBlac A (mutant) + inhibitor &lt;br /&gt;<br /> **[[9bzr]] - BbBlac A + drug&lt;br /&gt;<br /> *β-lactamase class A binary complex with antibiotics<br /> **[[7qlp]], [[7qnk]] – EcBlac Tem-171 + antibiotic&lt;br /&gt;<br /> **[[1tem]], [[1bt5]], [[1fqg]], [[1iyo]], [[1iyp]], [[1iyq]], [[1jvj]], [[3q07]], [[3q1f]] - EcBlac A (mutant) + antibiotic&lt;br /&gt;<br /> **[[5kmw]] - EcBlac A (mutant) + penicillin derivative&lt;br /&gt;<br /> **[[5chm]], [[5chj]], [[5za2]] – EcBlac FOX-4 + antibiotic&lt;br /&gt;<br /> **[[5cgx]] – EcBlac FOX-4 (mutant) + antibiotic&lt;br /&gt;<br /> **[[4zj3]] – EcBlac Tem (mutant) + antibiotic&lt;br /&gt;<br /> **[[3opp]], [[3opr]]- KpBlac A Shv-1 (mutant) + antibiotic&lt;br /&gt;<br /> **[[2wk0]], [[2x71]]– BlBlac A + antibiotic&lt;br /&gt;<br /> **[[3ly4]], [[3m2k]], [[3sh8]], [[3sh9]], [[5ghz]], [[5ghy]], [[5zg6]], [[5zft]] – BlBlac A (mutant) + antibiotic&lt;br /&gt;<br /> **[[5l2f]] - AbBlac A + antibiotic&lt;br /&gt;<br /> **[[5ne3]], [[7uhj]], [[7uhk]], [[7uhm]], [[7uhn]], [[7uho]], [[7uhp]], [[7uhq]], [[7zo2]], [[7zo3]], [[7zo4]], [[7zo5]], [[7zo6]], [[7zo7]] - StmBlac A + antibiotic &lt;br /&gt;<br /> **[[6dmh]] - SfBlac A (mutant) + antibiotic - ''Serratia fonticola''&lt;br /&gt;<br /> **[[6b6f]], [[6b6e]], [[6b6d]], [[6b6c]], [[6b5y]], [[8bv4]], [[8ebi]], [[8ebr]], [[8gct]], [[8gcx]] – MtBlac + antibiotic&lt;br /&gt;<br /> **[[8btv]], [[8btw]] – MtBlac A (mutant) + antibiotic&lt;br /&gt;<br /> **[[8v9g]] - KpBlac A + antibiotic&lt;br /&gt;<br /> **[[9xfx]], [[9xfy]], [[9xfw]] – YeBlac A + antibiotic &lt;br /&gt;<br /> **[[9bzq]] - BbBlac A + antibiotic&lt;br /&gt;<br /> **[[8eo6]] - meBlac A + antibiotic&lt;br /&gt;<br /> *Extended-spectrum β-lactamase class A<br /> **[[3ni9]] - PaESBL A Ges-2&lt;br /&gt;<br /> **[[4gnu]], [[4h8r]] - PaESBL A Ges-5&lt;br /&gt;<br /> **[[5f83]], [[5f82]] - PaESBL A Ges-5 (mutant)&lt;br /&gt;<br /> **[[3v3s]] – PaESBL Ges-18&lt;br /&gt;<br /> **[[1e25]] – PaESBL Per-1 (mutant)&lt;br /&gt;<br /> **[[5eoe]], [[5eoo]], [[8jk3]] – PaESBL Bel-1 &lt;br /&gt;<br /> **[[8joi]] – PaESBL Bel-1 (mutant)&lt;br /&gt;<br /> **[[4wz5]], [[9ixn]] – PaESBL Oxa-10 &lt;br /&gt;<br /> **[[5mmy]], [[5mnu]], [[9ixp]] – PaESBL Oxa-10 (mutant)&lt;br /&gt;<br /> **[[9ixq]] – PaESBL Oxa-17 &lt;br /&gt;<br /> **[[4yin]] – PaESBL Oxa-145 &lt;br /&gt;<br /> **[[4d2o]], [[6dgu]] - CfESBL Per-2 – ''Citrobacter freundii''&lt;br /&gt;<br /> **[[5kzh]] - AbESBL A - ''Acinetobacter baumannii''&lt;br /&gt;<br /> **[[3v3r]] - AbESBL A GES-11&lt;br /&gt;<br /> **[[3tsg]] – AbESBL GES-14&lt;br /&gt;<br /> **[[4oqi]], [[4op8]], [[4op5]] - EcESBL Tem-1 (mutant)&lt;br /&gt;<br /> **[[4opy]] - EcESBL Tem-63 (mutant)&lt;br /&gt;<br /> **[[4opr]], [[4opq]] - EcESBL Tem-94 (mutant)&lt;br /&gt;<br /> **[[1ylj]], [[2p74]] – EcESBL Ctx-M-9&lt;br /&gt;<br /> **[[3hre]], [[5kmt]], [[5kmu]], [[5kkf]] - EcESBL Ctx-M-9 (mutant)&lt;br /&gt;<br /> **[[4ua6]], [[6d7h]] – EcESBL Ctx-M-14 &lt;br /&gt;<br /> **[[1ylt]], [[5vth]], [[5twd]], [[6cyn]], [[6cyk]], [[6d7i]], [[6v5e]], [[6v6g]], [[6v6p]], [[7k2x]], [[7uon]], [[8dod]], [[8doe]], [[8don]], [[8dp4]], [[8dpq]], [[8ela]], [[8elb]], [[8sj3]] - EcBlac A Ctx-M-14 (mutant)&lt;br /&gt;<br /> **[[4hbt]], [[7u57]] – EcESBL Ctx-M-15&lt;br /&gt;<br /> **[[1ylw]] - EcESBL Ctx-M-16&lt;br /&gt;<br /> **[[1ylp]] - EcESBL Ctx-M-27 (mutant)&lt;br /&gt;<br /> **[[5zb7]] – EcESBL Ctx-M-64&lt;br /&gt;<br /> **[[6j25]] - EcESBL Ctx-M-64 (mutant)&lt;br /&gt;<br /> **[[4c3q]], [[5a93]], [[5a92]], [[5a90]] - EcESBL Ctx-M-97 (mutant)&lt;br /&gt;<br /> **[[6c78]], [[6c79]], [[6c7a]] - EcESBLToho-1 &lt;br /&gt;<br /> **[[1we4]], [[2xr0]], [[2zq7]], [[2zq8]], [[2zq9]], [[2zqa]], [[2zqc]], [[2zqd]], [[4bd0]], [[4bd1]], [[4c3k]], [[6u58]] - EcESBLToho-1 (mutant) &lt;br /&gt;<br /> **[[2xqz]], [[2wyx]] - EcESBL Toho-1 (mutant) – Neutron&lt;br /&gt;<br /> **[[6nvt]] – EcESBL Tla-1 &lt;br /&gt;<br /> **[[6pq9]] – EcESBL Tla-1 (mutant)&lt;br /&gt;<br /> **[[3zny]] - KpBlac A Ctx-M-12A (mutant) &lt;br /&gt;<br /> **[[4pm8]], [[7q0z]], [[7zpv]], [[8af7]], [[8af8]] - KpBlac A Ctx-M-14 &lt;br /&gt;<br /> **[[4pm6]], [[4pma]] - KpBlac A Ctx-M-14 (mutant) &lt;br /&gt;<br /> **[[7bh3]], [[7bh4]], [[7bh5]], [[7bh6]], [[7bh7]] - KpBlac A Ctx-M-15 &lt;br /&gt;<br /> **[[7qqc]], [[7r3q]], [[7r3r]] - KpBlac A Ctx-M-15 (mutant)&lt;br /&gt;<br /> **[[2qpn]] – KpESBL A Ges-1&lt;br /&gt;<br /> **[[6ts9]] - PaESBL A Ges-5&lt;br /&gt;<br /> **[[5gs8]] – SmESBL Tla-3 &lt;br /&gt;<br /> **[[6bn3]] – SeESBL Ctx-M-151 – ''Salmonela enterica''&lt;br /&gt;<br /> *Extended-spectrum β-lactamase class A binary complex<br /> **[[4gog]] - PaESBL A GES-1 + acyl intermediate&lt;br /&gt;<br /> **[[3nia]] - PaESBL A GES-2 + inhibitor&lt;br /&gt;<br /> **[[1yly]], [[1ym1]], [[1yms]], [[3g2y]], [[3g2z]], [[3g30]], [[3g31]], [[3g32]], [[3g34]], [[3g35]], [[4dds]], [[4ddy]], [[4de0]], [[4de1]], [[4de2]], [[4de3]] - EcBlac A Ctx-M-9 + inhibitor&lt;br /&gt;<br /> **[[4len]] - EcESBL Ctx-M-9 (mutant) + inhibitor&lt;br /&gt;<br /> **[[4uaa]], [[4ua7]], [[6md8]], [[6mia]], [[6mz1]], [[6mz2]], [[6ooe]], [[6oof]], [[6ooj]], [[6ook]], [[7s0v]], [[7u70]] – EcESBL Ctx-M-14 + inhibitor&lt;br /&gt;<br /> **[[6bt6]], [[6v7h]], [[6v7t]], [[6v83]], [[6v8v]] – EcESBL Ctx-M-14 (mutant) + inhibitor&lt;br /&gt;<br /> **[[1ylz]], [[4ua9]] – EcESBL Ctx-M-14 + boronic acid inhibitor&lt;br /&gt;<br /> **[[5vle]], [[5top]], [[5toy]], [[6vnu]] - EcESBL Ctx-M-14 (mutant) + ruthenium inhibitor&lt;br /&gt;<br /> **[[6unb]] – EcESBL Ctx-M-14 + antibiotic&lt;br /&gt;<br /> **[[7k2w]], [[7k2y]] – EcESBL Ctx-M-14 (mutant) + antibiotic&lt;br /&gt;<br /> **[[4hbu]], [[6sp6]], [[7u48]], [[7u49]] – EcESBL Ctx-M-15 + inhibitor&lt;br /&gt;<br /> **[[8pco]], [[8r7m]] - KpBlac A Ctx-M-14 + boronic acid inhibitor&lt;br /&gt;<br /> **[[7q0y]], [[8b2o]], [[8b2v]], [[8b2w]], [[8b3m]] – KpESBL Ctx-M-14 + antibiotic&lt;br /&gt;<br /> **[[4xuz]], [[7ti0]], [[8r2y]], [[8r2z]], [[8r30]], [[8r31]] - KpBlac A Ctx-M-15 + boronic acid inhibitor&lt;br /&gt;<br /> **[[7u4b]] – EcESBL Ctx-M-15 + antibiotic&lt;br /&gt;<br /> **[[6bu3]] – EcESBL Ctx-M-27 + inhibitor&lt;br /&gt;<br /> **[[4x69]] – EcESBL Ctx-M-44 + inhibitor&lt;br /&gt;<br /> **[[6ity]], [[6j2o]] – EcESBL Ctx-M-64 + inhibitor&lt;br /&gt;<br /> **[[6j2b]], [[6j2k]] – EcESBL Ctx-M-64 (mutant) + inhibitor&lt;br /&gt;<br /> **[[5g18]] - EcESBL Ctx-M-97 + substrate&lt;br /&gt;<br /> **[[4oqh]] - EcESBL Tem-63 (mutant) + boronic acid inhibitor&lt;br /&gt;<br /> **[[4oq0]], [[4opz]] - EcESBL Tem-94 (mutant) + boronic acid inhibitor&lt;br /&gt;<br /> **[[4c3q]], [[4opz]] - EcESBL Toho-1 (mutant) + boronic acid inhibitor - Neutron&lt;br /&gt;<br /> **[[6nvu]], [[6pq8]] – EcESBL Tla-1 + inhibitor&lt;br /&gt;<br /> **[[5x5g]] – SmESBL Tla-3 + inhibitor&lt;br /&gt;<br /> **[[6bpf]] – SeESBL Ctx-M-151 + inhibitor &lt;br /&gt;<br /> **[[6d3g]] – CfESBL Per-2 + inhibitor &lt;br /&gt;<br /> **[[7bds]] – KpESBL Ctx-M-15 + drug &lt;br /&gt;<br /> **[[7bdr]], [[7qq5]] – KpESBL Ctx-M-15 (mutant) + drug &lt;br /&gt;<br /> *Extended-spectrum β-lactamase class A binary complex with antibiotics<br /> **[[4qu3]] - PaESBL A Ges-2 + antibiotic&lt;br /&gt;<br /> **[[5eph]], [[5eua]] – PaESBL Bel-1 + antibiotic&lt;br /&gt;<br /> **[[1ymx]] - EcESBL Ctx-M-9 + antibiotic&lt;br /&gt;<br /> **[[3hlw]], [[3huo]], [[3hvf]] - EcESBL Ctx-M-9 (mutant) + antibiotic&lt;br /&gt;<br /> **[[4xxr]], [[5u53]], [[5tw6]], [[5twe]], [[6cyu]], [[6cyq]]. [[6bt6]] - EcESBL Ctx-M-14 (mutant) + antibiotic&lt;br /&gt;<br /> **[[4pm9]], [[7q11]], [[7q14]] - KpBlac A Ctx-M-14 + antibiotic&lt;br /&gt;<br /> **[[4pm5]], [[4pm7]] - KpBlac A Ctx-M-14 (mutant) + antibiotic&lt;br /&gt;<br /> **[[4s2i]] - KpBlac A Ctx-M-15 + antibiotic&lt;br /&gt;<br /> **[[8ehh]] - KpBlac A Ctx-M-96 + antibiotic&lt;br /&gt;<br /> **[[5gwa]], [[7o0o]] – SmESBL Tla-3 + antibiotic&lt;br /&gt;<br /> **[[8isp]], [[8isq]], [[8isr]] - StmESBL (mutant) + antibiotic&lt;br /&gt;<br /> *beta-lactamase class A complex with β-lactamase inhibitor protein (Blip)<br /> **[[1jtg]], [[2b5r]], [[3c7u]], [[3c7v]] – EcBlac A (mutant) + Protein Blip<br /> **[[1jtd]], [[3gmw]] - EcBlac A + Protein Blip<br /> **[[1s0w]], [[1xxm]] - EcBlac A + Protein Blip (mutant) <br /> **[[7s5s]] - EcBlac CTX-M-15 + Protein Blip<br /> **[[2g2u]] - KpBlac A Shv-1 + Protein Blip<br /> **[[2g2w]], [[3n4i]] - KpBlac A Shv-1 (mutant) + Protein Blip<br /> **[[3c4o]], [[3c4p]] - KpBlac A Shv-1 + Protein Blip (mutant) <br /> **[[3e2k]], [[3e2l]] - KpBlac A Kpc-2 (mutant) + Protein Blip<br /> **[[3qhv]], [[3qhy]] - Blac A + Protein Blip – ''Bacillus anthracis''<br /> *beta-lactamase class B (Zn containing) or metallo-beta-lactamase or NDM<br /> **[[1bc2]], [[1bmc]], [[1bvt]], [[1mqo]], [[2bc2]], [[3fcz]], [[3i0v]], [[3i11]], [[3i13]], [[3i14]], [[3i15]], [[3bc2]], [[4c09]], [[4nq4]], [[5fqa]], [[6dja]] – BcBlac B <br /> **[[2m5c]] - BcBlac B – NMR&lt;br /&gt;<br /> **[[1dxk]], [[2bfk]], [[2bfl]], [[2bfz]], [[2bg2]], [[2bg6]], [[2bg7]], [[2bg8]], [[2bga]], [[2nxa]], [[2nyp]], [[2nze]], [[2nzf]], [[2uyx]], [[3knr]], [[3kns]] - BcBlac B (mutant) <br /> **[[1a7t]], [[1znb]], [[2bmi]] – BfBlac B – ''Bacterioides fragilis''<br /> **[[2znb]] - BfBlac B + Cd<br /> **[[3znb]] – BfBlac B + Zn + Hg<br /> **[[4znb]] - BfBlac B (mutant) <br /> **[[5wck]] – FgBlac B - ''Fluoribacter gormanii''<br /> **[[1l9y]] - FgBlac B (mutant) <br /> **[[5n5g]] - PaBlac B Vim-1&lt;br /&gt;<br /> **[[1ko2]], [[1ko3]], [[4bz3]], [[4nq2]], [[5yd7]], [[7cjl]], [[8i52]] – PaBlac B Vim-2 <br /> **[[2whg]], [[2wrs]] - PaBlac B Vim-4<br /> **[[2y87]], [[2y8a]], [[2y8b]], [[4d1t]] - PaBlac B Vim-7&lt;br /&gt;<br /> **[[4d1u]], [[4d1v]], [[4d1w]] - PaBlac B Vim-7 (mutant)&lt;br /&gt;<br /> **[[7yrp]] - PaBlac B Vim-28&lt;br /&gt;<br /> **[[4awy]], [[4awz]], [[4p62]] - PaBlac B Aim-1<br /> **[[2ynt]], [[2ynu]], [[2ynv]], [[2ynw]] - PaBlac B Gim-1&lt;br /&gt;<br /> **[[5act]], [[5acs]], [[5acr]], [[5acq]], [[5acp]] - PaBlac B Gim-1 (mutant)&lt;br /&gt;<br /> **[[4ax0]], [[4ax1]] - PaBlac B Aim-1 (mutant)<br /> **[[2x02]], [[7b3r]], [[7b3s]], [[7b3u]] - PaBlac Oxa-10<br /> **[[2x01]] - PaBlac Oxa-10 (mutant)<br /> **[[9ixo]] - PaBlac Oxa-14<br /> **[[4uam]], [[2fhx]], [[4bp0]], [[5nde]] - PaBlac Imp-1 &lt;br /&gt;<br /> **[[4f6h]], [[4f6z]], [[5ls3]] – PaBlac Imp-1 (mutant)&lt;br /&gt;<br /> **[[6r79]], [[6yi4]] - PaBlac Imp-13 &lt;br /&gt;<br /> **[[5b3r]] - PaBlac Imp-18 &lt;br /&gt;<br /> **[[5ev6]], [[5y5b]], [[7dtm]] - SmBlac Imp-1 – ''Serratia marcescens''&lt;br /&gt;<br /> **[[1wuo]], [[1wup]], [[7dtn]] - SmBlac Imp-1 (mutant) <br /> **[[3vpe]] - SmBlac Smb-1&lt;br /&gt;<br /> **[[5fdh]] - SmBlac Oxa-405&lt;br /&gt;<br /> **[[2dkf]], [[2zo4]], [[2zwr]] – TtBlac B – ''Thermus thermophilus''<br /> **[[2zzi]] – TtBlac B + Fe<br /> **[[2fm6]], [[2fu6]], [[2fu7]], [[2h6a]] – StmMlac B<br /> **[[2qin]], [[2qjs]] - StmBlac B (mutant) <br /> **[[2gmn]], [[3lvz]] – BjBlac B – ''Bradyrhizobium japonicum''<br /> **[[2p4z]] – Blac B – ''Thermoanaerobacter tengcongensis''<br /> **[[3l6n]] – Blac B – ''Chryseobacter indolegenes''<br /> **[[3r2u]] – SaBlac B<br /> **[[3rkj]], [[3sbl]], [[3sfp]], [[3spu]], [[3zr9]], [[3pg4]], [[3srx]], [[4h0d]], [[6c6i]], [[5xp6]], [[5n0i]], [[5k4m]], [[5jqj]], [[5xp9]], [[5zgi]], [[5nbk]], [[6cac]], [[6ex7]], [[6lhe]], [[6twt]] – KpBlac B Ndm-1 + metal ion<br /> **[[5zgf]], [[7ct2]] - KpBlac B Ndm-1 (mutant) + metal ion&lt;br /&gt;<br /> **[[3rkk]], [[4gyq]], [[4gyu]] - KpBlac B Ndm-1 (mutant) <br /> **[[6mh0]] - KpBlac B Ndm-3 + Zn&lt;br /&gt;<br /> **[[5wig]], [[6mgz]], [[8sk2]] - KpBlac B Ndm-4 + Zn&lt;br /&gt;<br /> **[[6mgy]] - KpBlac B Ndm-5 + Zn&lt;br /&gt;<br /> **[[6mgx]] - KpBlac B Ndm-6 + Zn&lt;br /&gt;<br /> **[[6r78]] - KpBlac Imp-13 &lt;br /&gt;<br /> **[[3s0z]], [[6c89]], [[5zr8]] - EcBlac B Ndm-1<br /> **[[4tz9]] - EcBlac B Ndm-3&lt;br /&gt;<br /> **[[4tyf]] - EcBlac B Ndm-4&lt;br /&gt;<br /> **[[4tzf]] - EcBlac B Ndm-8&lt;br /&gt;<br /> **[[5wih]] - EcBlac B Ndm-12&lt;br /&gt;<br /> **[[6bm9]] – EcBlac B Vim-2&lt;br /&gt;<br /> **[[7xhw]] - EcBlac Imp-1 &lt;br /&gt;<br /> **[[7xhx]], [[7wzu]] - EcBlac Imp-6 &lt;br /&gt;<br /> **[[6skp]], [[6skq]], [[6skr]] - EcBlac Oxa-10 &lt;br /&gt;<br /> **[[6ovz]] - EcBlac &lt;br /&gt;<br /> **[[2yz3]] – Blac Vim-2 – ''Pseudomonas putida''<br /> **[[3sd9]] – SfBlac B <br /> **[[4ubq]] - AbBlac Imp-2 &lt;br /&gt;<br /> **[[5mmd]] - AbBlac Tmb-1 &lt;br /&gt;<br /> **[[5a87]] - KpBlac B &lt;br /&gt;<br /> **[[4uwo]], [[4uwp]], [[4uwr]], [[4uws]] - KpBlac B Vim-26&lt;br /&gt;<br /> **[[4wd6]] – PsBlac Dim-1 – ''Pseudomonas stutzeri''&lt;br /&gt;<br /> **[[5iqk]], [[7byq]], [[7bz1]], [[7bz3]], [[7bz4]], [[7bzi]] – Blac – uncultured&lt;br /&gt;<br /> **[[5ctn]], [[5ctm]] – Blac – ''Bacillus pumilus''&lt;br /&gt;<br /> **[[4ysb]] – Blac + Fe – ''Myxococcus xanthus''&lt;br /&gt;<br /> **[[6cqs]] – Blac + Zn – ''Sediminispirochaeta smaragdinae''&lt;br /&gt;<br /> **[[6dn4]] – CsBlac – ''Cronobacter sakazakii''&lt;br /&gt;<br /> **[[6dq2]], [[6dqh]], [[6dr8]], [[6nc5]] – CsBlac (mutant)&lt;br /&gt;<br /> **[[6mfi]] – Blac Mim-2 – ''Simiduia agarivorans''&lt;br /&gt;<br /> **[[6t5l]] – Blac B1 Myo-1 – ''Myroides odoratimimus''&lt;br /&gt;<br /> **[[6v54]], [[6v5m]], [[6v70]], [[6v71]] – HbBlac (mutant) – ''Hirschia baltica''&lt;br /&gt;<br /> **[[6v72]], [[6v73]] – ElBlac – ''Erythrobacter litoralis''&lt;br /&gt;<br /> **[[6jv4]] - VaBlac Vmb-1 – ''Vibrio alginolyticus''&lt;br /&gt;<br /> *beta-lactamase class B binary complex with antibiotic<br /> **[[5n5i]] - PaBlac B Vim-1 + antibiotic&lt;br /&gt;<br /> **[[4s2o]], [[5mox]], [[5moz]], [[9ixr]] - PaBlac Oxa-10 + antibiotic&lt;br /&gt;<br /> **[[6r73]], [[6rzr]], [[6rzs]], [[6s0h]] - PaBlac Imp-13 + antibiotic&lt;br /&gt;<br /> **[[5b1u]], [[5b15]], [[5aya]], [[5axo]] - SmBlac Smb-1 + antibiotic&lt;br /&gt;<br /> **[[4zej]] - PsBlac Dim-1 + antibiotic&lt;br /&gt;<br /> **[[2aio]], [[7a63]] – StmBlac B + antibiotic<br /> **[[5zge]], [[4ey2]], [[4eyb]], [[4eyf]], [[4efl]], [[4hl1]], [[4hl2]], [[4eyl]], [[4hky]], [[4ram]], [[4raw]], [[4rbs]], [[4rl0]], [[4rl2]], [[5of2]], [[5o2e]], [[5o2f]], [[6jkb]], [[8gpc]], [[8gpe]] – KpBlac B Ndm-1+ antibiotic<br /> **[[4rm5]] – KpBlac B Ndm-1 (mutant) + antibiotic&lt;br /&gt;<br /> **[[5ypi]], [[5ypk]], [[5ypl]], [[5ypm]], [[5ypn]] – EcBlac B Ndm-1 + antibiotic&lt;br /&gt;<br /> **[[6ol8]] – EcBlac B Ndm-12 + antibiotic&lt;br /&gt;<br /> **[[6lf4]] - VaBlac Vmb-1 + antibiotic &lt;br /&gt;<br /> *beta-lactamase class B binary complex<br /> **[[1a8t]], [[1hlk]], [[1kr3]] - BfBlac B + inhibitor<br /> **[[5w90]] – FgBlac + captopril <br /> **[[1jje]], [[1jjt]], [[3lce]], [[3wxc]], [[4c1f]], [[4c1g]], [[5ndb]], [[7yh9]], [[7yha]], [[8jao]] - PaBlac B Imp-1 + inhibitor<br /> **[[5n5h]], [[7afy]], [[7ayj]], [[7uya]], [[7uyb]], [[7uyc]], [[8p8y]], [[8p8z]], [[8p92]], [[8p93]], [[8p95]], [[8p9p]], [[8p9q]], [[8p9s]], [[8p9t]], [[8pa3]], [[8pa4]], [[8pa5]], [[8pa7]], [[8paa]], [[8pab]], [[8pac]], [[8pad]], [[8pah]], [[8pal]], [[8pam]], [[8pan]], [[8pao]], [[8pb0]], [[8pb2]], [[8pg2]], [[8pg3]], [[8pg4]], [[8pg5]], [[8pg6]], [[8pg7]], [[8pg8]], [[8pg9]], [[8pga]], [[8pgb]], [[8pgc]], [[8pgd]], [[8pge]], [[8pgf]], [[8pgg]], [[8pgh]], [[8pgi]], [[8pgj]], [[8pgk]], [[8pgl]], [[8pgm]], [[8pgn]], [[8pgo]], [[8pgp]], [[8pgq]], [[8pgr]], [[8pgs]], [[8pgt]], [[8pgu]], [[8pgv]], [[8pgw]], [[8pgx]], [[8pgy]], [[8pgz]], [[8ph0]], [[8ph1]], [[8ph2]], [[8ph3]], [[9c5p]] - PaBlac B Vim-1 + inhibitor&lt;br /&gt;<br /> **[[4c1d]], [[4c1e]], [[4pvo]], [[4pvt]], [[4ua4]], [[5lm6]], [[5le1]], [[5lch]], [[5lcf]], [[5lca]], [[5fqc]], [[5acx]], [[5acw]], [[5acv]], [[5acu]], [[5y6d]], [[5nhz]], [[5ni0]], [[5n4s]], [[5n4t]], [[5mxq]], [[5mxr]], [[5k48]], [[6hf5]], [[6ew3]], [[5y6e]], [[5o7n]], [[6dd0]], [[6dd1]], [[6j8r]], [[6kxo]], [[6kzn]], [[6sp7]], [[6v1p]], [[6zyn]], [[6zyo]], [[6zyp]], [[7afx]], [[7chv]], [[7du1]]. [[7dub]], [[7due]], [[7duy]], [[7duz]], [[7dv1]], [[7dyy]], [[7dz0]], [[7dz1]], [[7yhb]], [[7yhc]], [[7yhd]], [[8a4m]], [[8hx5]], [[8hxo]], [[8hxp]], [[8hxu]], [[8hxv]], [[8hxw]], [[8hy1]], [[8hy2]], [[8hyb]], [[8hyd]], [[8r5u]] - PaBlac B Vim-2 + inhibitor&lt;br /&gt;<br /> **[[6ibs]], [[6ibv]], [[6jn6]], [[6o5t]], [[6rpn]] - PaBlac B Vim-2 + boronic acid inhibitor&lt;br /&gt;<br /> **[[7a60]], [[8pjm]] - PaBlac B Vim-2 + antibiotic&lt;br /&gt;<br /> **[[5n55]], [[5n58]] - PaBlac B Vim-5 + inhibitor&lt;br /&gt;<br /> **[[5mm9]] - PaBlac B Vim-17 + inhibitor&lt;br /&gt;<br /> **[[5fq9]], [[6rtn]] - PaBlac Oxa-10 + inhibitor&lt;br /&gt;<br /> **[[1m2x]] – Blac B + captopril – ''Elizabethkingia meningoseptica''<br /> **[[1vgn]], [[3vqz]], [[5hh4]], [[5ewa]], [[5ev8]], [[5axr]], [[6jed]], [[6jka]], [[6lbl]], [[8z5l]] - SmBlac Imp-1+ inhibitor<br /> **[[6k4t]], [[6k4x]] - SmBlac Smb-1+ inhibitor&lt;br /&gt;<br /> **[[2doo]] - SmBlac Imp-1+ fluorescent agent<br /> **[[2fu8]], [[2fu9]], [[2gfj]], [[2gfk]], [[2hb9]], [[2qdt]], [[5dpx]], [[5evk]], [[5evd]], [[5evb]], [[5hh6]], [[5hh5]], [[7afz]], [[7uhi]], [[8hxe]], [[8hxi]] - StmBlac B L1 + inhibitor<br /> **[[3iof]], [[1x8i]], [[3iog]]– AhBlac B (mutant) + inhibitor<br /> **[[1x8g]], [[2gkl]], [[2qds]] – AhBlac B + inhibitor <br /> **[[5wcm]] – BjBlac B + inhibitor<br /> **[[2m5d]], [[4c1c]], [[4c1h]], [[4nq5]], [[4nq6]], [[5w8w]], [[4tyt]], [[5jmx]], [[6f2n]], [[6ewe]], [[6eum]] - BcBlac B + inhibitor&lt;br /&gt;<br /> **[[5ew0]] - SfBlac B + inhibitor&lt;br /&gt;<br /> **[[3q6v]] – SfBlac B + glycerol <br /> **[[4exy]], [[4exs]], [[4eyl]], [[4hky]], [[4u4l]], [[5a5z]], [[5n0h]], [[5zjc]], [[5zj8]], [[5zj7]], [[5zj2]], [[5zj1]], [[5zio]], [[5zh1]], [[5zgz]], [[5zgy]], [[5zgx]], [[5zgw]], [[5zgv]] [[5zgu]], [[5zgt]], [[5zgr]], [[5zgq]], [[5zgp]], [[6d1a]], [[6d1b]], [[6d1c]], [[6d1d]], [[6d1e]], [[6d1f]], [[6d1g]], [[6d1h]], [[6d1i]], [[6d1j]], [[6d1k]], [[6efj]], [[6mdu]], [[6ny7]], [[6rmf]], [[6v1m]], [[6xbe]], [[6xbf]], [[6zyq]], [[7up1]], [[7up2]], [[7up3]], [[8hy6]], [[8hyc]], [[8i8e]], [[8r5t]] – KpBlac B Ndm-1+ inhibitor<br /> **[[6o3r]] – KpBlac B Ndm-1 (mutant) + inhibitor&lt;br /&gt;<br /> **[[6q2y]], [[6q30]] – KpBlac B Ndm-1 + boronic acid inhibitor&lt;br /&gt;<br /> **[[5nai]] – KpBlac B Vim-5 + inhibitor&lt;br /&gt;<br /> **[[6kxi]], [[6kzl]], [[7vqj]] – EcBlac B Ndm-1+ inhibitor&lt;br /&gt;<br /> **[[5fqb]] - BcBlac B + inhibitor&lt;br /&gt;<br /> **[[6v61]] – HbBlac (mutant) + inhibitor&lt;br /&gt;<br /> **[[8a76]], [[8b1w]], [[8b1z]], [[8b20]] – PaBlac B Ndm-1+ inhibitor&lt;br /&gt;<br /> *beta-lactamase class C<br /> **[[5f1g]], [[5ggw]], [[6g9t]], [[6xg1]] – EcBlac C&lt;br /&gt;<br /> **[[3fkw]], [[3iwi]], [[3iwo]], [[3iwq]], [[3ixd]] – EcBlac C (mutant) <br /> **[[1zkj]], [[5f1f]], [[5k1d]], [[5gsc]] – EaBlac C – ''Enterobacter aerogenes''<br /> **[[2qz6]] – Blac C – ''Pseudomonas fluorescens''<br /> **[[7mqn]] – Blac C – ''Rhodobacter sphaeroides''&lt;br /&gt;<br /> **[[3w8k]], [[6k8x]], [[6m5p]] – KpBlac C&lt;br /&gt;<br /> **[[6m5h]], [[6m5q]] – KpBlac C (mutant)&lt;br /&gt;<br /> **[[4u0t]] – AbBlac C Adc-7&lt;br /&gt;<br /> **[[8fqv]] – AbBlac C Adc-30&lt;br /&gt;<br /> **[[8fqn]] – AbBlac C Adc-33&lt;br /&gt;<br /> **[[4qd4]] – AbBlac C Adc-68&lt;br /&gt;<br /> **[[8fqp]] – AbBlac C Adc-162&lt;br /&gt;<br /> **[[8fqr]] – AbBlac C Adc-212&lt;br /&gt;<br /> **[[8fqt]] – AbBlac C Adc-219&lt;br /&gt;<br /> **[[6fm6]] - Blac C Tru-1 – ''Aeromonas enteropelogenes''&lt;br /&gt;<br /> *beta-lactamase class C binary complex<br /> **[[3gqz]], [[3gr2]], [[3grj]], [[3gsg]], [[3gtc]], [[3gv9]], [[3gvb]], [[6xfs]] - EcBlac C + inhibitor<br /> **[[3bm6]], [[3fkv]], [[3o86]], [[3o87]], [[3o88]] – EcBlac C + boronic acid inhibitor<br /> **[[3ixb]], [[3ixg]] - EcBlac C (mutant) + boronic acid inhibitor <br /> **[[6whf]], [[8ttp]] - EcBlac C + antibiotic&lt;br /&gt;<br /> **[[3ixh]] - EcBlac C (mutant) + antibiotic<br /> **[[1onh]], [[1q2q]], [[1y54]] - EncBlac C + inhibitor <br /> **[[1s6r]] - EncBlac C+ boronic acid inhibitor<br /> **[[1rgz]], [[5xhr]] - EncBlac C + antibiotic<br /> **[[1rgy]] - CfBlac C + antibiotic <br /> **[[1zc2]], [[2zc7]], [[6k9t]], [[6ka5]] – KpBlac C + inhibitor<br /> **[[4wbg]] - KpBlac C + antibiotic&lt;br /&gt;<br /> **[[6kby]] - KpBlac C + AMP&lt;br /&gt;<br /> **[[2wzx]], [[2wzz]], [[6i30]] – PaBlac C + inhibitor<br /> **[[4ooy]] - PaBlac C + antibiotic&lt;br /&gt;<br /> **[[4u0x]], [[5wac]], [[5wad]], [[5wae]], [[5waf]], [[5wag]], [[5w12]], [[5w13]], [[5w14]], [[6tzf]], [[6tzg]], [[6tzi]], [[6tzj]], [[6wif]], [[8fqm]] - AbBlac C Adc-7 + boronic acid inhibitor &lt;br /&gt;<br /> **[[8fqw]] - AbBlac C Adc-30 + boronic acid inhibitor &lt;br /&gt;<br /> **[[8fqo]] - AbBlac C Adc-33 + boronic acid inhibitor &lt;br /&gt;<br /> **[[6pwm]] - AbBlac C + antibiotic&lt;br /&gt;<br /> **[[6fm7]] - Blac C Tru-1 + inhibitor &lt;br /&gt;<br /> **[[5k1f]] - EaBlac C + inhibitor &lt;br /&gt;<br /> *beta-lactamase class D<br /> **[[1k55]], [[1k57]], [[1k4e]], [[1ewz]], [[1fof]], [[1ddk]], [[1e3u]], [[1e4d]], [[1h8z]], [[2rl3]] – PaBlac D <br /> **[[2hp5]], [[2hp6]], [[2hp9]], [[2hpb]], [[2wgw]], [[2wki]] - PaBlac D (mutant) <br /> **[[1k56]], [[2k02]] - PaBlac Pse-2<br /> **[[1g68]], [[1k4f]] – PaBlac Pse-4<br /> **[[1g6a]] – PaBlac Pse-4 (mutant) <br /> **[[1ko2]] – PaBlac Vim-2<br /> **[[7l5v]], [[7n1m]] - PaBlac D Oxa-935&lt;br /&gt;<br /> **[[1k38]] – Blac D – ''Salmonella typhimurium''<br /> **[[1m6k]] – EcBlac D<br /> **[[3if6]], [[4s2p]] - KpBlac D Oxa-46<br /> **[[3hbr]], [[6hoo]], [[7ass]], [[7lxg]] – KpBlac D Oxa-48<br /> **[[6i5d]], [[6rj7]], [[8pea]], [[8peb]], [[8pec]] - KpBlac D Oxa-48 (mutant)&lt;br /&gt;<br /> **[[6huh]] - KpBlac D Oxa-427&lt;br /&gt;<br /> **[[6hb8]] - KpBlac D Oxa-517&lt;br /&gt;<br /> **[[6n6w]], [[6n6t]] - AbBlac D Oxa-23 (mutant)&lt;br /&gt;<br /> **[[4zdx]] - AbBlac D Oxa-51&lt;br /&gt;<br /> **[[4y0o]] - AbBlac D Oxa-58&lt;br /&gt;<br /> **[[6t1h]] - AbBlac D Oxa-66&lt;br /&gt;<br /> **[[6nz8]] - AbBlac D Oxa-231&lt;br /&gt;<br /> **[[4s2l]], [[5odz]] - EncBlac D Oxa-163&lt;br /&gt;<br /> **[[4ied]] – Blac – ''Fusobacterium nucleatum''&lt;br /&gt;<br /> **[[5e2f]], [[6w5e]] – BsBlac D &lt;br /&gt;<br /> **[[6nlw]] – Blac D – ''Shewanella oneidensis''&lt;br /&gt;<br /> **[[6nhs]] – Blac D – Nostoc&lt;br /&gt;<br /> **[[6nhu]] – Blac D – ''Agrobacterium fabrum''&lt;br /&gt;<br /> **[[6ni0]] – BtBlac D &lt;br /&gt;<br /> **[[6n1n]] – Blac D – ''Sebaldella termitidis''&lt;br /&gt;<br /> **[[6ue2]] – Blac D – ''Peptoclostridium difficile''&lt;br /&gt;<br /> **[[6wy4]], [[7rl8]] – CdBlac D – ''Clostridium difficile''&lt;br /&gt;<br /> **[[7rlr]] – CdBlac D (mutant) &lt;br /&gt;<br /> **[[6w5g]] – BaBlac D – ''Bacillus atrophaeus''&lt;br /&gt;<br /> **[[6w5o]] – BaBlac D (mutant) &lt;br /&gt;<br /> **[[7k3m]] – CpBlac D &lt;br /&gt;<br /> *beta-lactamase class D binary complex<br /> **[[1k6s]] - PaBlac D + phenylboronic acid<br /> **[[1dd6]], [[1h5x]], [[1h8y]], [[2wgv]] - PaBlac D + inhibitor<br /> **[[3isg]] – EcBlac D + inhibitor<br /> **[[4s2m]] - EncBlac D Oxa-163+ inhibitor&lt;br /&gt;<br /> **[[7khy]], [[7khz]] - EncBlac D Oxa-163 (mutant) + drug&lt;br /&gt;<br /> **[[3pae]], [[3pag]], [[4f94]] - AbBlac D (mutant) + inhibitor <br /> **[[3znt]], [[4y0u]], [[4y0t]] - AbBlac D + inhibitor&lt;br /&gt;<br /> **[[6mpq]], [[6b22]] - AbBlac D Oxa-24 + inhibitor&lt;br /&gt;<br /> **[[8cul]], [[8cuo]] - AbBlac D Oxa-24 + boronic acid inhibitor&lt;br /&gt;<br /> **[[5vfd]] - AbBlac D Oxa-24 (mutant) + inhibitor&lt;br /&gt;<br /> **[[5fat]], [[5fas]], [[5faq]], [[5fap]], [[5fao]], [[5dva]], [[5dtt]], [[5dts]], [[5dtk]], [[5qa4]], [[5qa5]], [[5qa6]], [[5qa7]], [[5qa8]], [[5qa9]], [[5qaa]], [[5qab]], [[5qac]], [[5qad]], [[5qae]], [[5qaf]], [[5qag]], [[5qah]], [[5qai]], [[5qaj]], [[5qak]], [[5qal]], [[5qam]], [[5qan]], [[5qao]], [[5qap]], [[5qaq]], [[5qar]], [[5qas]], [[5qat]], [[5qau]], [[5qav]], [[5qaw]], [[5qax]], [[5qay]], [[5qaz]], [[5qb0]], [[5qb1]], [[5qb2]], [[5qb3]], [[5qb4]], [[6uvk]], [[6v1o]], [[7ass]], [[7aux]], [[7aw5]], [[7jhq]], [[7k5v]], [[7l8o]], [[7r6z]], [[8faj]], [[8sqf]], [[8sqg]] - KpBlac D Oxa-48 + inhibitor&lt;br /&gt;<br /> *beta-lactamase class D binary complex with antibiotics<br /> **[[1k6r]], [[1k54]], [[7l5t]] - PaBlac D + antibiotic<br /> **[[2wgi]], [[2wkh]] - PaBlac D (mutant) + antibiotic<br /> **[[7t7g]] - AbBlac D Oxa-23 + antibiotic&lt;br /&gt;<br /> **[[6n6x]], [[6n6y]], [[6n6v]], [[6n6u]] - AbBlac D Oxa-23 (mutant) + antibiotic&lt;br /&gt;<br /> **[[7rpg]], [[7rpe]], [[7rpf]] - AbBlac D Oxa-24 + antibiotic&lt;br /&gt;<br /> **[[7rp8]], [[7rp9]], [[7rpa]], [[7rpb]], [[7rpc]], [[7rpd]] - AbBlac D Oxa-24 (mutant) + antibiotic&lt;br /&gt;<br /> **[[7vvi]], [[7vx3]], [[7vx6]] - AbBlac D Oxa-58 + antibiotic&lt;br /&gt;<br /> **[[8sq7]] - AbBlac D Oxa-82 (mutant) + antibiotic&lt;br /&gt;<br /> **[[8sq8]] - AbBlac D Oxa-109 + antibiotic&lt;br /&gt;<br /> **[[4x56]] - AbBlac D Oxa-160 + antibiotic&lt;br /&gt;<br /> **[[4x53]] - AbBlac D Oxa-160 (mutant) + antibiotic&lt;br /&gt;<br /> **[[4x55]] - AbBlac D Oxa-225 (mutant) + antibiotic&lt;br /&gt;<br /> **[[4mll]] - KpBlac D Oxa-1 + antibiotic&lt;br /&gt;<br /> **[[4s2j]], [[4s2k]], [[4s2n]], [[4wmc]], [[6pqi]], [[6psg]], [[6pt1]], [[6pt5]], [[6ptu]], [[7kh9]], [[7khq]] - KpBlac D Oxa-48 + antibiotic&lt;br /&gt;<br /> **[[6pxx]], [[7kh9]] - KpBlac D Oxa-48 (mutant) + antibiotic&lt;br /&gt;<br /> **[[7khy]] - KpBlac D Oxa-163 + antibiotic&lt;br /&gt;<br /> **[[6xj3]], [[8qnz]] - KpBlac D + antibiotic&lt;br /&gt;<br /> **[[8ep6]] – CpBlac + antibiotic – ''Chitinophaga pinensis''&lt;br /&gt;<br /> *AmpC beta-lactamase<br /> **[[1ke4]], [[2bls]], [[2zj9]], [[3bls]], [[5gzw]], [[6t3d]], [[7cin]] – EcBlac<br /> **[[1l0d]], [[1l0e]], [[1l0f]], [[1l0g]], [[4kg6]], [[5joc]] - EcBlac (mutant)<br /> **[[6lc7]] - EncBlac &lt;br /&gt;<br /> **[[4gzb]], [[4wz4]], [[4wyy]] – PaBlac&lt;br /&gt;<br /> **[[4net]] – AbBlac&lt;br /&gt;<br /> **[[5e2h]] – Blac – ''Mycobacterium smegmatis''&lt;br /&gt;<br /> **[[5e2g]] – Blac – ''Burkholderia cenocepacia''&lt;br /&gt;<br /> *AmpC beta-lactamase binary complex<br /> **[[1fcn]] – EcBlac (mutant) + substrate<br /> **[[1iel]], [[1fcm]], [[1iem]], [[1kvm]], [[1ll5]], [[1ll9]], [[1llb]], [[4kz3]], [[4kz4]], [[4okp]], [[4olg]], [[4jxg]], [[6t35]], [[6t5y]], [[6tbw]], [[9c6p]]- EcBlac + antibiotic<br /> **[[1fco]], [[1i5q]], [[1kvl]], [[4ken]], [[4kg2]], [[4kg5]], [[4kg6]], [[4kz3]], [[4kz4]], [[4kg9]], [[4kz5]], [[4kz6]], [[4kz7]], [[4kz8]], [[4kza]], [[4kzb]] - EcBlac (mutant) + antibiotic<br /> **[[1fsw]], [[1fsy]], [[1kds]], [[1kdw]], [[1ke0]], [[1ke3]], [[1mxo]], [[1my8]], [[2i72]], [[4e3i]], [[4e3j]], [[4e3k]], [[4e3l]], [[4e3m]], [[4e3n]], [[4e3o]], [[4lv0]], [[4lv1]], [[4lv2]], [[4lv3]], [[4oqg]], [[6yeo]], [[6ypd]] - EcBlac + boronic acid inhibitor<br /> **[[1pi4]], [[1pi5]], [[2ffy]] - EcBlac (mutant) + boronic acid inhibitor<br /> **[[1l2s]], [[1xgi]], [[1xgj]], [[2hdq]], [[2hdr]], [[2hds]], [[2hdu]], [[2p9v]], [[2pu2]], [[2pu4]], [[2r9w]], [[2r9x]], [[2rcx]], [[4jxs]], [[4jxv]], [[4jxw]], [[4old]], [[6dpz]], [[6dpy]], [[6dpx]], [[6dpt]], [[6t7l]], [[6tpm]], [[9c81]], [[9c83]], [[9c84]], [[9dhl]] - EcBlac + inhibitor<br /> **[[1o07]], [[4kz9]] - EcBlac (mutant) + inhibitor<br /> **[[6lc8]], [[6lc9]], [[7ti1]] - EncBlac + inhibitor&lt;br /&gt;<br /> **[[4xux]] - EncBlac + boronic acid inhibitor&lt;br /&gt;<br /> **[[4hef]], [[4nk3]], [[4x68]] - PaBlac + inhibitor&lt;br /&gt;<br /> **[[3s1y]], [[3s22]] - PaBlac (mutant) + inhibitor<br /> **[[6s1s]], [[8sdr]], [[8sdt]] - PaBlac + boronic acid inhibitor&lt;br /&gt;<br /> *Carbapenemase<br /> **[[3f9o]] - AhBlac B – ''Aeromonas hydrophila''<br /> **[[3fai]], [[1x8h]], [[3sw3]], [[3t9m]] - AhBlac B (mutant)<br /> **[[6p96]] - KpBlac Oxa-48 &lt;br /&gt;<br /> **[[7o5t]], [[7o9n]], [[7peh]] - KpBlac D&lt;br /&gt;<br /> **[[7pgo]] - KpBlac D (mutant)&lt;br /&gt;<br /> **[3rxw]], [[3rxx]], [[2ov5]], [[5ul8]] – KpBlac Kpc-2<br /> **[[6xd5]], [[7ljk]], [[7lk8]], [[7tb7]], [[7tbx]] - KpBlac Kpc-2 (mutant)&lt;br /&gt;<br /> **[[6qwd]] - KpBlac Kpc-3&lt;br /&gt;<br /> **[[6qwe]] - KpBlac Kpc-4&lt;br /&gt;<br /> **[[6z21]], [[6z22]] - KpBlac Kpc-4 (mutant)&lt;br /&gt;<br /> **[[8tjm]], [[8tn0]] - KpBlac Kpc-44&lt;br /&gt;<br /> **[[4eqi]] – SfBlac Sfc-1<br /> **[[4jf5]], [[4jf6]] - AbBlac Oxa-23 &lt;br /&gt;<br /> **[[4oh0]], [[4z9q]] - AbBlac Oxa-58 &lt;br /&gt;<br /> **[[5boh]] - AbBlac Oxa-58 (mutant)&lt;br /&gt;<br /> **[[5iy2]] - AbBlac Oxa-143 &lt;br /&gt;<br /> **[[1bue]] – EncBlac&lt;br /&gt;<br /> **[[4tze]], [[4tzb]] - EcBlac Ndm-5&lt;br /&gt;<br /> **[[6ogo]] - EcBlac Ndm-9&lt;br /&gt;<br /> **[[3dw0]], [[3c5a]] - EcBlac Kpc-2 &lt;br /&gt;<br /> **[[8ehu]] – ChBlac A – ''Chromobacterterium haemolyticum''&lt;br /&gt;<br /> * Carbapenemase binary complexes<br /> **[[6p97]], [[6p98]], [[6p99]], [[6p9c]], [[6pk0]] - KpBlac Oxa-48 + antibiotic&lt;br /&gt;<br /> **[[67dml]] - KpBlac Oxa-48 + inhibitor&lt;br /&gt;<br /> **[[5eec]], [[6td1]], [[7utb]] - KpBlac Kpc-2 + boronic acid inhibitor&lt;br /&gt;<br /> **[[4zbe]], [[6b1y]], [[6b1x]], [[6b1w]], [[6b1j]], [[6b1h]], [[6b1f]], [[6d15]], [[6d16]], [[6d17]], [[6d18]], [[6d19]], [[6j8q]], [[6jn3]], [[6jn4]], [[6jn5]], [[6m7i]], [[6mey]], [[6mll]], [[6mnp]], [[6qw9]], [[6td0]], [[6v1j]], [[7vqn]], [[7ti2]], [[7u8s]], [[7u9b]], [[7ua7]] - KpBlac Kpc-2 + inhibitor&lt;br /&gt;<br /> **[[5uj3]], [[5uj4]], [[6v7i]], [[7a61]], [[7pep]], [[7tc1]] - KpBlac Kpc-2 + antibiotic&lt;br /&gt;<br /> **[[6xd7]], [[6z23]], [[6z25]], [[7llb]], [[7llh]], [[7lnl]], [[7lr9]], [[7pse]], [[7psf]], [[8aki]], [[8akj]], [[8akk]], [[8akl]], [[8akm]], [[8g2r]], [[8g2t]] - KpBlac Kpc-2 (mutant) + antibiotic&lt;br /&gt;<br /> **[[6qwa]] - KpBlac Kpc-3 + inhibitor&lt;br /&gt;<br /> **[[6qwb]], [[6qwc]] - KpBlac Kpc-4 + inhibitor&lt;br /&gt;<br /> **[[8tmr]], [[8tmt]] - KpBlac Kpc-44 + antibiotic&lt;br /&gt;<br /> **[[6tt8]], [[6ttc]], [[7uox]], [[7uoy]] - KpBlac NDM-1 + inhibitor&lt;br /&gt;<br /> **[[6lip]], [[6liz]], [[6lj0]], [[6lj1]], [[6lj2]], [[6lj4]], [[6lj5]], [[6lj6]], [[6lj7]], [[6lj8]], [[8sko]] - KpBlac NDM-1 + drug&lt;br /&gt;<br /> **[[8skp]] - KpBlac NDM-4 + inhibitor&lt;br /&gt;<br /> **[[4euz]], [[4ev4]] – SfBlac Sfc-1 (mutant) + antibiotic<br /> **[[4jf4]] - AbBlac Oxa-23 + antibiotic&lt;br /&gt;<br /> **[[7t7e]] - AbBlac Oxa-23 + inhibitor&lt;br /&gt;<br /> **[[5ll7]] - EcBlac Kpc-2 + boronic acid inhibitor&lt;br /&gt;<br /> **[[6mkq]], [[6mk6]] - Blac + inhibitor – ''Vibrio cholerae''&lt;br /&gt;<br /> **[[5mgi]] - KoBlac Kpc-2 + boronic acid inhibitor - ''Klebsiella oxytoca'' &lt;br /&gt;<br /> **[[8ek9]] – ChBlac A + antibiotic &lt;br /&gt;<br /> * Non-classified beta-lactamase<br /> **[[1bsg]] – Blac – ''Streptomyces albus''<br /> **[[6wgr]] - SaBlac &lt;br /&gt;<br /> **[[1alq]], [[1blp]], [[1dja]], [[1djb]], [[1djc]], [[1ghi]] – SaBlac (mutant) <br /> **[[1gce]], [[1xx2]] – EncBlac<br /> **[[6op6]], [[6op7]] - EncBlac Vim-20&lt;br /&gt;<br /> **[[4fr7]], [[4fsb]] - EncBlac Vim-31 (mutant)&lt;br /&gt;<br /> **[[5hfo]] - EcBlac Oxa-232&lt;br /&gt;<br /> **[[1dy6]] – SmBlac Sme-1 <br /> **[[1fr1]], [[1fr6]] – CfBlac <br /> **[[1i2s]], [[4blm]] – BlBlac<br /> **[[2gdn]], [[3zhh]], [[5oyo]], [[5nj2]], [[7k8l]] – MtBlac <br /> **[[4whi]] – MtBlac C terminal&lt;br /&gt;<br /> **[[4jlf]], [[6h28]], [[6h27]],[[7a5u]], [[7a5w]], [[8r88]], [[8rfz]] - MtBlac (mutant)&lt;br /&gt;<br /> **[[2jc7]], [[3g4p]] – AbBlac<br /> **[[3byd]] – KoBlac <br /> **[[3i7j]] – Blac – ''Mycobacterium bovis''<br /> **[[3lez]] – Blac – ''Oceanobacter iheyensis''<br /> **[[3p09]] – Blac – ''Francisella tularensis''<br /> **[[4ewf]] – Blac – ''Sphaerobacter thermophilus''<br /> **[[3w4o]], [[3w4p]], [[4efz]] – Blac – ''Burkholderia pseudomallei''&lt;br /&gt;<br /> **[[3w4q]] – BmBlac – ''Burkholderia multivorans''&lt;br /&gt;<br /> **[[7d5j]] – BmBlac (mutant)&lt;br /&gt;<br /> **[[5ihv]] – Blac – ''Burkholderia ambifaria''&lt;br /&gt;<br /> **[[5hx9]], [[5hw3]] – Blac – ''Burkholderia vietnamiensis''&lt;br /&gt;<br /> **[[5vpq]] – Blac – ''Burkholderia phymatum''&lt;br /&gt;<br /> **[[5evl]] – Blac – ''Chromobacterterium violaceum''&lt;br /&gt;<br /> **[[5e43]] – Blac – ''Streptoporangium roseum''&lt;br /&gt;<br /> **[[5e2e]] – YeBlac &lt;br /&gt;<br /> **[[4k0w]] – AbBlac Oxa-23 (mutant)&lt;br /&gt;<br /> **[[4k0x]] – AbBlac Oxa-23 &lt;br /&gt;<br /> **[[6goa]] – AbBlac Oxa-48 (mutant)&lt;br /&gt;<br /> **[[5oft]] – KpBlac Oxa-48 (mutant)&lt;br /&gt;<br /> **[[5oe0]] – KpBlac Oxa-181 &lt;br /&gt;<br /> **[[5oe2]] – KpBlac Oxa-245 &lt;br /&gt;<br /> **[[6gth]] – KpBlac &lt;br /&gt;<br /> **[[7oda]] – Blac Oxa-436 – ''Enterobacter asburiae'' &lt;br /&gt;<br /> **[[3wrt]] – ChBlac – ''Chromohalobacter''&lt;br /&gt;<br /> **[[3wrz]], [[3ws0]], [[3ws1]], [[3ws2]], [[3ws3]], [[3ws4]], [[3ws5]] – ChBlac (mutant)&lt;br /&gt;<br /> **[[6njk]] – Blac – ''Sulfitobacter''&lt;br /&gt;<br /> **[[6n9k]], [[6x9y]], [[8jb7]] – EcBlac &lt;br /&gt;<br /> **[[6v3q]] – PaBlac Fim-1&lt;br /&gt;<br /> **[[6v3u]] – ElBlac Fim-1 &lt;br /&gt;<br /> **[[6n36]], [[6v4w]] – CpBlac &lt;br /&gt;<br /> **[[6mu9]] – Blac – ''Bacillus megaterium''&lt;br /&gt;<br /> **[[6ch0]], [[6cgy]] – AaBlac – ''Alicyclobacillus acidoterrestris''&lt;br /&gt;<br /> **[[6edm]], [[7lno]], [[7lnr]], [[7me9]] – CdBlac &lt;br /&gt;<br /> **[[6izc]] – VpBlac – ''Vibrio parahaemolyticus''&lt;br /&gt;<br /> **[[6izd]] – VpBlac (mutant)&lt;br /&gt;<br /> **[[6wgp]] – Blac – ''Xanthomonas campestris''&lt;br /&gt;<br /> **[[6wgq]] – Blac – ''Shigella flexneri''&lt;br /&gt;<br /> **[[6whl]] – Blac – ''Legionella pneumophila''&lt;br /&gt;<br /> **[[6wjm]] – Blac – ''Desulfarculus baarsii''&lt;br /&gt;<br /> * Non-classified beta-lactamase binary complex<br /> **[[1ghm]], [[1ghp]], [[1pio]] - SaBlac (mutant) + antibiotic<br /> **[[1blc]], [[1blh]] – SaBlac + inhibitor<br /> **[[1bls]] – EncBlac + phosphonate derivative <br /> **[[1bul]] - EncBlac + penicillin derivative<br /> **[[1ga0]] - EncBlac + inhibitor <br /> **[[1i2w]] – BlBlac + cifoxitin<br /> **[[3cg5]], [[4q8i]], [[4qb8]], [[7k8e]], [[7k8f]], [[7k8h]], [[7k8k]], [[8ec4]], [[8ecf]] – MtBlac + antibiotic<br /> **[[3n8s]], [[3ny4]], [[3n6i]], [[3n7w]], [[3n8l]], [[3n8r]], [[3nbl]], [[3nc8]], [[3nck]], [[3nde]], [[3ndg]] - MtBlac (mutant) + antibiotic<br /> **[[3dwz]], [[3iqa]], [[3m6b]], [[3m6h]], [[4df6]], [[6h2k]], [[6h2i]], [[6h2h]], [[6h2g]], [[6h2c]] – MtBlac + inhibitor<br /> **[[4x6t]], [[4qhc]] – MtBlac (mutant) + inhibitor&lt;br /&gt;<br /> **[[3vff]], [[3vfh]], [[4ebl]], [[4ebn]], [[4ebp]] – MtBlac (mutant) + intermediate<br /> **[[6h2a]] – MtBlac (mutant) + protein&lt;br /&gt;<br /> **[[3fv7]], [[3fyz]], [[3fzc]], [[3mbz]] – AbBlac + inhibitor<br /> **[[8cum]], [[8cup]], [[8cuq]], [[8fqq]], [[8fqs]], [[8fqu]] – AbBlac + boronic acid inhibitor&lt;br /&gt;<br /> **[[7t7d]], [[7t7f]] – AbBlac Oxa-23 + inhibitor&lt;br /&gt;<br /> **[[4wm9]] – AbBlac Oxa-24 + antibiotic &lt;br /&gt;<br /> **[[8hxn]] – SfBlac + inhibitor&lt;br /&gt;<br /> **[[8v9g]] – KpBlac Ges-5 + inhibitor&lt;br /&gt;<br /> **[[6q5b]], [[6q5f]] – KpBlac Oxa-48 (mutant) + inhibitor&lt;br /&gt;<br /> **[[6uqs]], [[6uqt]], [[6uqu]], [[6ur3]] – PaBlac (mutant) + boronic acid inhibitor&lt;br /&gt;<br /> *[[6yrp]], [[7a5z]] - PaBlac Vim-2 + drug&lt;br /&gt;<br /> **[[6cgz]] – AaBlac + lactone derivative&lt;br /&gt;<br /> **[[7kep]], [[7keq]], [[7ker]], [[7lnq]], [[7mea]], [[7meb]], [[7mec]], [[7med]], [[7mee]], [[7mef]], [[7meg]], [[7meh]] – CdBlac + drug&lt;br /&gt;<br /> **[[6pqc]] – CdBlac (mutant) + antibiotic &lt;br /&gt;<br /> **[[7doo]] – BmBlac + antibiotic &lt;br /&gt;<br /> **[[7ddm]] – BmBlac + peptide &lt;br /&gt;<br /> *Serine beta-lactamase (ClbP)<br /> **[[7mde]], [[7mdf]] – EcClbP (mutant)&lt;br /&gt;<br /> **[[7ul6]] – EcClbP – Cryo EM &lt;br /&gt;<br /> **[[3o3v]] – EcClbP peptidase domain 38-372&lt;br /&gt;<br /> **[[4e6w]], [[4e6x]], [[7mdc]] – EcClbP + boronic acid inhibitor&lt;br /&gt;<br /> **[[7v1y]] – EcClbP + peptide + inhibitor&lt;br /&gt;<br /> **[[8pc9]], [[8pca]], [[8pcb]], [[8pcc]], [[8pcd]], [[8pce]], [[[8pcf]], [8pcg]], [[8pci]], [[8pcj]], [[8pck]], [[8pcl]], [[8pcm]], [[8pcn]], [[8pcp]], [[8pcq]], [[8pcr]], [[8pcs]], [[8pct]], [[8pcu]], [[8pcv]] – KpClbP CTX-M-14 + bo<br /> <br /> }}<br /> <br /> [[Category:Topic Page]]</div>

Openfox https://proteopedia.org/index.php?title=Hydroxysteroid_dehydrogenase_3D_structures&diff=4433711 2026-03-29T10:39:18Z

<p>Openfox: Fix TreeAndMenu broken list structure</p> <hr /> <div>==3D structures of hydroxysteroid dehydrogenase==<br /> <br /> Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}<br /> {{#tree:id=OrganizedByTopic|openlevels=0|<br /> *3-α HSD or AKR1C2<br /> * '''For 3-α HSD type 2 see''' [[Prostaglandin F synthase]]<br /> **[[1ral]] – rHSD – rat&lt;BR /&gt;<br /> **[[1fjh]] - CtHSD – ''Comamonas testosterone''&lt;BR /&gt;<br /> **[[4is2]] – CsHSD – ''Clostridium scindens''&lt;br /&gt;<br /> **[[7p36]], [[8kc6]] - LkHSD – ''Lactobacillus kefiri''&lt;br /&gt;<br /> **[[8kcn]] - LkHSD (mutant)&lt;br /&gt;<br /> *''3-α HSD binary complex''<br /> **[[2fvl]], [[2hdj]] - hHSD + NADP - human&lt;BR /&gt;<br /> **[[1lwi]] – rHSD + NADP&lt;BR /&gt;<br /> **[[1fk8]] – CtHSD + NAD&lt;BR /&gt;<br /> **[[2dkn]] - HSD + NAD – ''Pseudomonas''&lt;BR /&gt; <br /> **[[4is3]] - CsHSD + NAD&lt;br /&gt;<br /> **[[7ejh]], [[7eji]], [[7ejj]], [[7vdo]], [[7vet]] - LkHSD (mutant`) + NADP &lt;br /&gt;<br /> *''3-α HSD ternary complex''<br /> **[[4jq1]], [[4jq2]], [[4jq3]], [[4jq4]], [[4jqa]], [[4jtq]], [[4jtr]] - hHSD + NSAID drug + NADP &lt;br /&gt;<br /> **[[1afs]] - rHSD + hydroxysteroid + NADP&lt;BR /&gt;<br /> *3-α HSD type 3<br /> **[[2hdj]] - hHSD + NADP&lt;br /&gt;<br /> **[[1ihi]], [[1j96]] - hHSD + hydroxysteroid + NADP &lt;br /&gt;<br /> **[[1xjb]] - hHSD + citrate+ acetate + NADP&lt;br /&gt;<br /> **[[4l1w]] - hHSD + progesterone + NADP&lt;br /&gt;<br /> **[[4l1x]] - hHSD (mutant) + progesterone + NADP&lt;br /&gt;<br /> **[[4xo6]], [[4xo7]] – hHSD + NADP + epiandrosterone derivative&lt;br /&gt;<br /> *7-α HSD <br /> **[[3gaf]] - BmHSD – ''Brucella melitensis''&lt;BR /&gt;<br /> **[[8hax]], [[8hde]], [[8hdi]], [[8hdn]], [[8hs6]], [[8hs9]] - BmHSD (mutant)&lt;BR /&gt;<br /> **[[8hs4]], [[8hs5]], [[8hsa]] - BmHSD (mutant) + NAD&lt;BR /&gt;<br /> **[[7eny]] – EcHSD – ''Escherichia coli''&lt;br /&gt;<br /> **[[1ahh]] – EcHSD + NAD &lt;BR /&gt;<br /> **[[1ahi]], [[1fmc]] – EcHSD + hydroxysteroid + NAD&lt;br /&gt;<br /> **[[5epo]] – HSD + NADP – ''Clostridium sardiniese''&lt;br /&gt;<br /> *7-beta HSD <br /> **[[5fyd]] – CaHSD – ''Collinsella aerofaciens&lt;''br /&gt;<br /> **[[5gt9]] – CaHSD + NADP&lt;br /&gt;<br /> *20-α HSD or AKR1C1 <br /> **[[6a7a]], [[8jp2]] – hHSD + NADP + inhibitor&lt;br /&gt;<br /> **[[1q5m]] - raHSD + NADP – rabbit<br /> *''20-α HSD ternary complex''<br /> **[[1mrq]] – hHSD + hydroxysteroid + NADP&lt;BR /&gt;<br /> **[[4yvp]] – hHSD + NADP + sulfonylurea derivative&lt;br /&gt;<br /> **[[3c3u]], [[3nty]] - hHSD + inhibitor + NADP&lt;BR /&gt;<br /> **[[3gug]] - hHSD (mutant) + inhibitor + NADP&lt;BR /&gt;<br /> **[[6ijx]] – hHSD + NADP + meclofenamic acid&lt;br /&gt;<br /> **[[1q13]] - raHSD + hydroxysteroid + NADP&lt;BR /&gt;<br /> *20-beta HSD <br /> **[[6m9u]] – BaHSD – ''Bifidobacterium adolescentis''&lt;br /&gt;<br /> **[[6ow4]] – BaHSD + NADP &lt;br /&gt;<br /> *11-β HSD or corticosteroid 11-β-dehydrogenase 1<br /> **[[1xu7]], [[1xu9]] - hHSD (mutant) + NADP&lt;BR /&gt;<br /> **[[2pd6]] - hHSD + NAD&lt;BR /&gt;<br /> **[[3hb4]] - hHSD + inhibitor&lt;BR /&gt;<br /> **[[3dey]] - hHSD + hydroxysteroid&lt;BR /&gt;<br /> **[[1y5m]] - mHSD + NADP - mouse&lt;BR /&gt; <br /> **[[1xse]] - gpHSD catalytic domain + NADP – guinea pig&lt;BR /&gt;<br /> **[[3dwf]], [[3lz6]] - gpHSD catalytic domain (mutant) + NADP&lt;BR /&gt;<br /> *''11-β HSD ternary complex''<br /> **[[2bel]] - hHSD 1 + hydroxysteroid + NADP&lt;BR /&gt;<br /> **[[2irw]], [[2ilt]], [[4bb5]], [[4bb6]], [[4yyz]] - hHSD 1 + inhibitor + NADP&lt;BR /&gt;<br /> **[[2rbe]], [[3byz]], [[3bzu]], [[3ch6]], [[3czr]], [[3d3e]], [[3d4n]], [[3d5q]], [[3ey4]], [[3fco]], [[3frj]], [[3h6k]], [[3hfg]], [[3oq1]], [[3pdj]], [[3qqp]], [[3tfq]], [[4c7j]], [[4c7k]], [[4p38]], [[5pgu]], [[5pgv]], [[5pgw]], [[5pgx]], [[5pgy]], [[5pgz]], [[5pii]], [[5pij]], [[5qii]] - hHSD 1 (mutant) + inhibitor + NADP&lt;BR /&gt;<br /> **[[6nj7]] - hHSD 1 + colleic acid + NAP&lt;br /&gt;<br /> **[[3g49]] - gpHSD catalytic domain + inhibitor + NADP&lt;BR /&gt;<br /> **[[1y5r]], [[3gmd]] - mHSD 1 + hydroxysteroid + NADP&lt;BR /&gt;<br /> **[[4k26]], [[5qij]] - mHSD 1 + inhibitor + NADP&lt;br /&gt;<br /> **[[4nmh]] - mHSD 1 (mutant) + inhibitor + NADP&lt;br /&gt;<br /> *17-α HSD or AKR1C21<br /> **[[2he8]] – mHSD - mouse &lt;br /&gt;<br /> **[[3fjn]] - mHSD (mutant) &lt;br /&gt;<br /> **[[2he5]], [[2hej]], [[2p5n]] - mHSD + NADP &lt;br /&gt;<br /> **[[2ipf]] - mHSD + hydroxysteroid + NADP &lt;br /&gt;<br /> **[[2ipg]], [[2ipj]] - mHSD (mutant) + hydroxysteroid + NADP&lt;br /&gt;<br /> **[[3cv6]] - mHSD (mutant) + inhibitor + NADP&lt;br /&gt;<br /> *17-β HSD or estradiol 11-β-dehydrogenase 1<br /> * '''For 17-β HSD type 5 or AKR1C3 see''' [[Prostaglandin F synthase]]<br /> **[[1bhs]] – hHSD 1 &lt;BR /&gt;<br /> **[[1s9c]] - hHSD 4 (mutant) &lt;BR /&gt;<br /> **[[8g9v]] – hHSD 13 &lt;BR /&gt;<br /> **[[5ics]] – hHSD 14 &lt;BR /&gt;<br /> **[[3is3]] – ClHSD – ''Cochliobolus lunatus''&lt;BR /&gt;<br /> **[[3itd]] - ClHSD (mutant)<br /> *''17-β HSD binary complex''<br /> **[[1fds]], [[1iol]], [[1jtv]], [[1yb1]], [[3dhe]], [[3klm]], [[3klp]], [[3km0]] - hHSD + hydroxysteroid&lt;br /&gt;<br /> **[[1dht]], [[1fdw]] - hHSD (mutant) + hydroxysteroid&lt;BR /&gt;<br /> **[[6mnc]] – hHSD 1 + estrone&lt;br /&gt;<br /> **[[1fdv]] - hHSD 1 (mutant) + NAD&lt;BR /&gt;<br /> **[[1equ]], [[1qyv]] - hHSD 1 + NADP&lt;BR /&gt;<br /> **[[1i5r]], [[6dtp]] - hHSD 1 + inhibitor&lt;br /&gt;<br /> **[[1zbq]] - hHSD 4 + NAD&lt;BR /&gt;<br /> **[[2o23]] – hHSD 10 + NAD&lt;br /&gt;<br /> **[[5en4]], [[5icm]], [[5l7t]], [[5l7w]], [[5l7y]] - hHSD 14 + inhibitor&lt;br /&gt;<br /> **[[5js6]], [[5jsf]], [[6h0m]], [[6hno]] - hHSD 14 (mutant) + NAD&lt;br /&gt;<br /> **[[8g93]] - HSD 13 (mutant) + NAD - dog&lt;BR /&gt;<br /> **[[3qwf]] - ClHSD + NADP&lt;BR /&gt;<br /> **[[4fiz]], [[4fj0]], [[4fj1]], [[4fj2]] – ClHSD + dehydroxy flavonoid inhibitor&lt;br /&gt;<br /> *''17-β HSD ternary complex''<br /> **[[1fdt]], [[1qyw]], [[1qyx]] - hHSD 1 + hydroxysteroid + NADP&lt;BR /&gt;<br /> **[[1a27]], [[1fdu]] - hHSD 1 (mutant) + hydroxysteroid + NADP&lt;BR /&gt;<br /> **[[3hb5]], [[6cge]] - hHSD 1 + inhibitor + NADP&lt;BR /&gt;<br /> **[[4hfr]], [[4hx5]], [[4iju]], [[4ijv]], [[4ijw]], [[4k1l]], [[6cgc]] - hHSD 1 (mutant) + inhibitor + NADP&lt;br /&gt;<br /> **[[6mne]], [[7x3z]] – hHSD 1 + NADP + estrone&lt;br /&gt;<br /> **[[5o42]], [[5o43]], [[5o6o]], [[5o6x]], [[5o6z]], [[5o72]] - hHSD 14 + inhibitor + NAD&lt;br /&gt;<br /> **[[5hs6]] - hHSD + NAD + estrone&lt;br /&gt;<br /> **[[4cql]] - hHSD 8 + carbonyl reductase + NAD&lt;br /&gt;<br /> **[[4cqm]] - hHSD 8 + carbonyl reductase + NADP&lt;br /&gt;<br /> **[[5o42]], [[5o43]], [[5o6o]], [[5o6x]], [[5o6z]], [[5o72]], [[6qck]] - hHSD 14 + inhibitor + NAD&lt;br /&gt;<br /> **[[5o7c]], [[6ffb]], [[6g4l]], [[6gbt]], [[6gtb]], [[6gtu]], [[6zde]], [[6zdi]], [[6zr6]], [[6zra]], [[6zt2]] - hHSD 14 (mutant) + inhibitor + NAD&lt;br /&gt;<br /> **[[6emm]] - hHSD 14 (mutant) + salicilate + NAD&lt;br /&gt;<br /> **[[5hs6]] - hHSD 14 + NAD + estrone&lt;br /&gt;<br /> **[[3qwh]], [[3qwi]] - ClHSD + hydroxysteroid + NADP&lt;BR /&gt;<br /> *3-α 20-β HSD<br /> **[[2hsd]] – SeHSD – ''Streptomyces exfoliates''&lt;BR /&gt;<br /> **[[1hdc]] – SeHSD + inhibitor<br /> *Carbonyl reductase/20-β HSD<br /> **[[1n5d]] - HSD + NADP – pig&lt;br /&gt;<br /> *3-β/17-β HSD<br /> **[[1hxh ]] - CtHSD<br /> }}<br /> <br /> [[Category:Topic Page]]</div>

Openfox https://proteopedia.org/index.php?title=Histone_deacetylase_3D_structures&diff=4433710 2026-03-29T10:39:17Z

<p>Openfox: Fix TreeAndMenu broken list structure</p> <hr /> <div>== 3D Structures of histone deacetylase ==<br /> <br /> Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}<br /> {{#tree:id=OrganizedByTopic|openlevels=0|<br /> *'''HDAC class I'''<br /> *HDAC1<br /> **[[4bkx]] – hHDAC1 + MTA1 – human&lt;br /&gt;<br /> **[[3hgq]], [[3hgt]] – hHDAC1 subunit 3&lt;br /&gt;<br /> **[[5icn]] – hHDAC1 + MTA1 + peptide&lt;br /&gt;<br /> **[[7ao8]], [[7ao9]] – hHDAC1 + MTA1 + MBD2 – Cryo EM&lt;br /&gt;<br /> **[[7aoa]] – hHDAC1 + MTA1 + MBD2 + RBBP4 – Cryo EM&lt;br /&gt;<br /> **[[6z2j]], [[6z2k]] – hHDAC1 + DNTTIP1 + Midac deacetylase – Cryo EM&lt;br /&gt;<br /> **[[8voj]], [[8vpq]], [[8vrt]] – hHDAC1 + CoRest + Lsd1 – Cryo EM&lt;br /&gt;<br /> **[[5j8j]] – yHDAC1 residues 457-698 – yeast&lt;br /&gt;<br /> **[[6z6f]], [[6z6h]], [[6z6o]], [[6z6p]] – yHDAC1 – Cryo EM&lt;br /&gt;<br /> *HDAC2<br /> **[[3max]] – hHDAC2 + amide derivative &lt;br /&gt;<br /> **[[4lxz]], [[6g3o]] – hHDAC2 core domain + SAHA&lt;br /&gt;<br /> **[[8bpa]], [[8bpb]], [[8c60]] – hHDAC2 + SIN3B + PF1 – Cryo EM&lt;br /&gt;<br /> **[[8bpc]] – hHDAC2 + SIN3B + PF1 + SAHA – Cryo EM&lt;br /&gt;<br /> **[[8bpa]], [[8bpb]], [[8c60]] – hHDAC2 + SIN3B + PF1 – Cryo EM&lt;br /&gt;<br /> **[[8bpc]] – hHDAC2 + SIN3B + PF1 + SAHA – Cryo EM&lt;br /&gt;<br /> **[[4ly1]], [[5iwg]], [[5ix0]], [[6wbw]], [[6wbz]], [[6xdm]], [[6xeb]], [[6xec]], [[7js8]], [[7kbh]], [[7kbg]], [[7ltg]], [[7ltk]], [[7ltl]], [[7mot]], [[7mox]], [[7moy]], [[7zzo]], [[7zzp]], [[7zzr]], [[7zzs]], [[7zzt]], [[7zzv]], [[7zzw]], [[8a0b]] – hHDAC2 core domain + inhibitor&lt;br /&gt;<br /> **[[6whn]], [[6who]], [[6whq]], [[6whz]], [[6wi3]], [[7mos]], [[7moz]] – hHDAC2 core domain + peptide macrocycle&lt;br /&gt;<br /> **[[9dtq]] – hHDAC2 + CoRest + Lsd1 – Cryo EM&lt;br /&gt;<br /> **[[9ggm]] – hHDAC2 + KBTBD4 – Cryo EM&lt;br /&gt;<br /> **[[9ggl]], [[9ggn]], [[9i2c]] – hHDAC2 + KBTBD4 + molecular glue – Cryo EM&lt;br /&gt;<br /> **[[7vrr]] – AtHDAC2a residues 1-95 – ''Arabidopsis thaliana''&lt;br /&gt;<br /> **[[7vmf]], [[7vmh]] – AtHDAC2d residues 1-95 &lt;br /&gt;<br /> **[[7vmi]] – AtHDAC2c residues 1-95 &lt;br /&gt;<br /> *HDAC3<br /> **[[4a69]] – hHDAC3 + nuclear receptor corepressor 2 + inositol tetraphosphate<br /> *HDAC8<br /> **[[3ew8]], [[3ezp]], [[3ezt]], [[3f06]] – hHDAC8 (mutant)&lt;br /&gt; <br /> **[[3sff]], [[3sfh]] – hHDAC8 + inhibitor&lt;br /&gt;<br /> **[[4qa1]], [[4qa2]], [[4qa3]], [[4qa4]] - hHDAC8 (mutant) + inhibitor&lt;br /&gt;<br /> **[[1t64]], [[3f0r]], [[5ths]] – hHDAC8 + trichostatin A &lt;br /&gt;<br /> **[[5d1b]], [[5dc5]], [[5tht]], [[5thu]], [[5thv]], [[7jvw]] - hHDAC8 (mutant) + amide derivative&lt;br /&gt;<br /> **[[1t67]], [[1vkg]], [[1w22]], [[3f07]], [[6oda]], [[6odb]], [[6odc]] - hHDAC8 + amide derivative&lt;br /&gt;<br /> **[[1t69]] - hHDAC8 + SAHA&lt;br /&gt;<br /> **[[4qa0]], [[7jvu]] - hHDAC8 (mutant) + SAHA&lt;br /&gt;<br /> **[[5fcw]], [[5fue]] - hHDAC8 + hydroxamate&lt;br /&gt;<br /> **[[5vi6]] - hHDAC8 + trapoxin A&lt;br /&gt;<br /> **[[2v5w]] – hHDAC8 + tripeptide substrate&lt;br /&gt;<br /> **[[3ewf]], [[4qa5]], [[4qa6]], [[4qa7]], [[5d1c]], [[5d1d]], [[5dc6]], [[5dc7]], [[5dc8]], [[7jvv]], [[7p3s]] - hHDAC8 (mutant) + tetrapeptide substrate&lt;br /&gt;<br /> **[[3rqd]] - hHDAC8 + largazole&lt;br /&gt;<br /> **[[4rn0]], [[4rn1]], [[4rn2]] - hHDAC8 (mutant) + largazole analog&lt;br /&gt;<br /> **[[5bwz]] - hHDAC8 (mutant) + droxinostat&lt;br /&gt;<br /> **[[3mz3]] - hHDAC8 (Co) + amide derivative&lt;br /&gt;<br /> **[[3mz7]] - hHDAC8 (Co) (mutant) + amide derivative&lt;br /&gt;<br /> **[[3mz4]] - hHDAC8 (Mn) (mutant) + amide derivative&lt;br /&gt;<br /> **[[3mz6]] - hHDAC8 (Fe) (mutant) + amide derivative&lt;br /&gt;<br /> **[[2v5x]] - hHDAC8 (mutant) + octanediamide derivative&lt;br /&gt;<br /> **[[4bz5]] – SmHDAC8 – ''Schistosoma mansoni''&lt;br /&gt;<br /> **[[4bz7]], [[4bz8]], [[4bz9]], [[4cqf]], [[6hqy]], [[6hrq]], [[6hsh]], [[6hsz]], [[6ht8]], [[6htg]], [[6hth]], [[6hti]], [[6htt]], [[6htz]], [[6hu0]], [[6hu1]], [[6hu2]], [[6hu3]], [[6tld]], [[7p2s]], [[7p2t]], [[7p2u]], [[7p2v]], [[7p3s]], [[7poz]] – SmHDAC8 + inhibitor&lt;br /&gt;<br /> **[[6hsf]], [[6hsg]], [[6hsk]] – SmHDAC8 (mutant) + inhibitor&lt;br /&gt;<br /> **[[4bz6]], [[6fu1]], [[6gx3]], [[6gxa]], [[6gxu]], [[6gxw]] – SmHDAC8 + SAHA &lt;br&gt;derivative&lt;br /&gt;<br /> *HDAC Rpd3<br /> **[[8kc7]], [[8w9c]] – yRpd3 + SIN3 + RCO1 + EAF3 – Cryo EM&lt;br /&gt;<br /> **[[8hxx]] – yRpd3 + SIN3 + RCO1 + EAF3 + histone H3 – Cryo EM&lt;br /&gt;<br /> **[[8hxy]], [[8hy0]], [[8ihn]], [[8iht]], [[8jho]], [[8kd2]], [[8kd3]], [[8kd4]], [[8kd5]], [[8kd6]], [[8kd7]], [[8tof]], [[8w9d]], [[8w9e]], [[8w9f]] – yRpd3 + SIN3 + RCO1 + EAF3 + nucleosome – Cryo EM&lt;br /&gt;<br /> **[[8hpo]] – yRpd3 in SIN3/HDAC complex – Cryo EM&lt;br /&gt;<br /> **[[8ga8]] – yRpd3 in Rpd3L complex – Cryo EM&lt;br /&gt;<br /> *HDAC Clr<br /> **[[5ikk]] – fyClr3 – fission yeast&lt;br /&gt;<br /> **[[8ifg]] – fyClr6 + Prw1 + Pst2 + Eaf3 + Cph1 + Cph2 – Cryo EM&lt;br /&gt;<br /> **[[8i03]] – fyClr6 in SIN3L complex – Cryo EM&lt;br /&gt;<br /> *'''HDAC class IIA'''<br /> *HDAC4<br /> **[[2h8n]] – hHDAC4 N terminal &lt;br /&gt;<br /> **[[2o94]] - hHDAC4 N terminal (mutant)&lt;br /&gt;<br /> **[[2vqw]] - hHDAC4 catalytic domain (mutant)&lt;br /&gt;<br /> **[[2vqj]], [[2vqm]], [[4cbt]], [[5a2s]] – hHDAC4 catalytic domain + inhibitor&lt;br /&gt;<br /> **[[6fyz]] - hHDAC4 catalytic domain + SAHA derivative&lt;br /&gt;<br /> **[[2vqo]], [[2vqq]], [[2vqv]], [[4cby]] – hHDAC4 catalytic domain (mutant) + inhibitor&lt;br /&gt;<br /> **[[5zop]], [[5zoo]] - hHDAC4 catalytic domain (mutant) + SMRT corepressor&lt;br /&gt;<br /> *HDAC5<br /> **[[5uwi]] – hHDAC5 + RAN + RANBP1 + exportin&lt;br /&gt;<br /> *HDAC7<br /> **[[3c0y]] – hHDAC7 catalytic domain&lt;br /&gt;<br /> **[[3c0z]] - hHDAC7 catalytic domain + octanedioic acid hydroxyamide phenylamide&lt;br /&gt;<br /> **[[3c10]] - hHDAC7 catalytic domain + trichostatin A&lt;br /&gt;<br /> **[[3znr]], [[3zns]] - hHDAC7 catalytic domain + inhibitor&lt;br /&gt;<br /> **[[8wzl]] – AtHDAC7 8-383&lt;br /&gt;<br /> *HDAC9<br /> **[[1tqe]] – mHDAC9 + myocyte-specific enhancer factor + DNA – mouse<br /> *HDAC10 or polyamine deacetylase 10<br /> **[[5td7]], [[7kuv]] – zHDAC10 - zebrafish&lt;br /&gt;<br /> **[[6ufn]], [[6ufo]], [[6uhu]], [[6uhv]], [[6uii]], [[6uij]], [[6uil]], [[6uim]], [[6wbq]], [[6wdv]], [[6wdw]], [[6wdx]], [[6wdy]], [[7sgg]], [[7sgi]], [[7sgj]], [[7sgk]], [[7u3m]], [[7u59]], [[7u69]], [[7u6a]], [[7u6b]], [[9cbf]], [[9cbg]], [[9cbh]], [[9cbi]] – zHDAC10 + inhibitor&lt;br /&gt;<br /> **[[6vnq]], [[7kuq]], [[7kur]], [[7kus]], [[7kut]] – zHDAC10 (mutant) + inhibitor &lt;br /&gt;<br /> *HDAC<br /> **[[4a6q]], [[4a90]] - hHDAC subunit SAP18 &lt;br /&gt;<br /> **[[2hde]] – hHDAC subunit SAP18 (mutant) – NMR&lt;br /&gt;<br /> **[[4a8x]] - hHDAC subunit SAP18 + RNA-binding protein + hook-like&lt;br /&gt;<br /> **[[2kdp]] – hHDAC subunit SAP30 – NMR&lt;br /&gt;<br /> **[[2ld7]] – hHDAC subunit SAP30 +SIN3A PAH 3 domain – NMR&lt;br /&gt;<br /> **[[5ikk]] – HDAC CLR3 – fission yeast&lt;br /&gt;<br /> **[[7q1b]], [[7q1c]] – HDAC DAC2 + inhibitor – ''Trypanosoma cruzi''&lt;br /&gt;<br /> **[[9gky]] – VcHDAC + decanoic acid – ''Vibrio cholerae''&lt;br /&gt;<br /> **[[9gkv]] – VcHDAC + SAHA&lt;br /&gt;<br /> *'''HDAC class IIB'''<br /> *HDAC6; ; Domains – catalytic 2 288-646; CD1 – 40-440; CD2 440-798; zinc finger 1109-1213<br /> **[[3c5k]] – hHDAC6 zinc finger domain&lt;br /&gt;<br /> **[[3gv4]] - hHDAC6 zinc finger domain + ubiquitin peptide&lt;br /&gt;<br /> **[[3phd]] - hHDAC6 + polyubiquitin&lt;br /&gt;<br /> **[[5b8d]], [[5kh3]], [[5kh7]], [[5kh9]], [[6ce6]], [[6ce8]], [[6cea]], [[6cec]], [[6ced]], [[6cee]], [[6cef]], [[5wpb]], [[5wbn]], [[8g43]], [[8g44]], [[8g45]] – hHDAC6 zinc finger + inhibitor&lt;br /&gt;<br /> **[[7qno]] – zHDAC6 CD1+CD2 domain &lt;br /&gt;<br /> **[[5eem]] – zHDAC6 catalytic domain&lt;br /&gt;<br /> **[[5edu]], [[5eef]], [[5eek]], [[5een]], [[5ef7]], [[5ef8]], [[5efb]], [[5efg]], [[5efh]], [[5g0f]], [[5g0g]], [[5g0h]], [[5g0i]], [[5g0j]], [[5wgi]], [[5wgk]], [[5wgl]], [[5wgm]], [[6cgp]], [[6cw8]], [[6dvl]], [[6dvm]], [[6dvn]], [[6dvo]], [[6mr5]], [[6pye]], [[6pzo]], [[6pzr]], [[6pzs]], [[6pzu]], [[6q0z]], [[6r0k]], [[6tcy]], [[6thv]], [[6uo2]], [[6uo3]], [[6uo5]], [[6uo7]], [[6v79]], [[6v7a]], [[6vnr]], [[6zw1]], [[7jom]], [[7o2p]], [[7o2r]], [[7u8z]], [[7uk2]], [[8bjk]], [[8cj7]], [[8d98]], [[8d99]], [[8d9a]], [[8d9b]], [[8d9c]], [[8g1z]], [[8g20]], [[8gd4]], [[8qa7]], [[8tq0]], [[9cbj]], [[9cbk]], [[9dm6]], [[9efc]], [[9efr]], [[9efx]], [[9egf]], [[9egu]], [[9eu0]], [[9ggh]], [[9ggk]], [[9mqp]] – zHDAC6 catalytic domain 2 + inhibitor &lt;br /&gt;<br /> **[[6uo4]], [[6uo7]], [[6uob]], [[6uoc]], [[6wyo]] – zHDAC6 catalytic domain (mutant) + inhibitor &lt;br /&gt;<br /> **[[5eei]], [[5w5k]], [[6csp]], [[6csq]], [[6csr]], [[6css]] – zHDAC6 catalytic domain + SAHA derivative&lt;br /&gt;<br /> **[[6wyp]], [[6wyq]] – zHDAC6 catalytic domain (mutant) + SAHA derivative&lt;br /&gt;<br /> **[[6wsj]], [[8eqi]] – zHDAC6 catalytic domain 2 + peptide &lt;br /&gt;<br /> **[[5efj]] – zHDAC6 catalytic domain 2 + HC toxin &lt;br /&gt;<br /> **[[53fj]], [[5efk]], [[5efn]] – zHDAC6 catalytic domain (mutant) + peptide &lt;br /&gt;<br /> **[[8a8z]] – zHDAC6 CD2 domain 440-798 + inhibitor &lt;br /&gt;<br /> *HDAC15<br /> **[[6j6t]] – AtHDAC15 HD domain &lt;br /&gt;<br /> *'''HDAC class III'''<br /> *SIRT1 or NAD-dependent protein deacetylase sirtuin-1<br /> **[[4ig9]] – hSIRT1 + Zn&lt;br /&gt;<br /> **[[4i5i]] – hSIRT1 + NAD + indole + Zn&lt;br /&gt;<br /> **[[4if6]], [[4kxq]] – hSIRT1 + ADP-ribose + Zn&lt;br /&gt;<br /> **[[5btr]] – hSIRT1 + acetyl lysine peptide + resveratol + Zn&lt;br /&gt;<br /> **[[4zzh]] – hSIRT1 + activator + Zn&lt;br /&gt;<br /> **[[4zzi]] – hSIRT1 + activator + inhibitor + Zn&lt;br /&gt;<br /> **[[4zzj]] – hSIRT1 + acetyl lysine peptide + activator + Zn&lt;br /&gt;<br /> *SIRT2<br /> **[[1j8f]], [[3zgo]], [[9s44]] – hSIRT2 + Zn&lt;br /&gt;<br /> **[[5yqo]], [[5yqn]], [[5yqm]], [[5yql]] – hSIRT2 + inhibitor + Zn&lt;br /&gt;<br /> **[[5y0z]] – hSIRT2 (mutant) + inhibitor + Zn&lt;br /&gt;<br /> **[[3zgv]], [[5d7o]] – hSIRT2+ ADP ribose + Zn&lt;br /&gt;<br /> **[[4y6q]] – hSIRT2+ ADP ribose derivative + Zn&lt;br /&gt;<br /> **[[4l3o]], [[4y6l]], [[4y6o]] – hSIRT2 + acetyl lysine peptide + Zn&lt;br /&gt;<br /> **[[4x3o]], [[4x3p]], [[6l65]], [[6l66]], [[6l71]], [[7bos]], [[7bot]] – hSIRT2 + myristoyl peptide + Zn&lt;br /&gt;<br /> **[[4rmg]], [[5dy4]], [[5dy5]], [[5y5n]], [[5mat]], [[6nr0]] – hSIRT2 + inhibitor + Zn&lt;br /&gt;<br /> **[[6qcn]] – hSIRT2 + ADP-ribose + quercetin derivative + Zn&lt;br /&gt;<br /> **[[5d7p]], [[5d7q]], [[5mar]] – hSIRT2 + inhibitor + ADP-ribose + Zn&lt;br /&gt;<br /> **[[4rmh]], [[4rmi]] – hSIRT2 + acetyl lysine peptide + inhibitor + Zn&lt;br /&gt;<br /> **[[4r8m]] – hSIRT2 + peptide + tridecanethial + Zn&lt;br /&gt;<br /> **[[4rmj]] – hSIRT2 + ADP-ribose + nicotinamide + Zn &lt;br /&gt;<br /> **[[5g4c]] – hSIRT2 + carba-NAD + Zn&lt;br/ &gt;<br /> **[[5fyq]] – hSIRT2 + RAN AA peptide + Zn&lt;br/ &gt;<br /> **[[5dy5]] – hSIRT2 + thiazole derivative + piperazine derivative + Zn&lt;br/ &gt;<br /> **[[5dy4]] – hSIRT2 + thiazole derivative + NAD + Zn&lt;br/ &gt;<br /> **[[5d7q]], [[5d7p]], [[5d7o]] – hSIRT2 + oxolan derivative + Zn&lt;br/ &gt;<br /> **[[2hjh]] – ySIRT2 + pseudosubstrate + nicotinamide + Zn &lt;br /&gt;<br /> **[[4iao]] – ySIRT2 + SIRT4 + ADP-ribose + Zn&lt;br /&gt;<br /> *SIRT3<br /> **[[5d7n]] – hSIRT3 + Zn&lt;br /&gt;<br /> **[[3gls]] – hSIRT3 (mutant) + Zn&lt;br /&gt;<br /> **[[3glu]], [[5y4h]], [[5ytk]] – hSIRT3 + peptide + Zn&lt;br /&gt;<br /> **[[6iso]] – hSIRT3 + histone peptide + Zn&lt;br /&gt;<br /> **[[5bwn]], [[5bwo]] – hSIRT3 + palmitoyl H3K9 peptide + Zn&lt;br /&gt;<br /> **[[5bwl]] – hSIRT3 + succinyl peptide + Zn&lt;br /&gt;<br /> **[[3glr]], [[3glt]], [[4bve]], [[4fvt]], [[6iso]] – hSIRT3 + acetyl lysine peptide + Zn&lt;br /&gt;<br /> **[[4hd8]] – hSIRT3 + acetyl lysine peptide + piceatannol + Zn&lt;br /&gt;<br /> **[[4fz3]] – hSIRT3 + acetyl lysine peptide + coumarine derivative + Zn&lt;br /&gt;<br /> **[[4c78]], [[4c7b]] – hSIRT3 + acetyl lysine peptide + resveratol derivative + Zn&lt;br /&gt;<br /> **[[5z94]], [[5z93]], [[5zgc]] – hSIRT3 + histone peptide + Zn&lt;br /&gt;<br /> **[[4jsr]], [[4jt8]], [[4jt9]], [[4o8z]] – hSIRT3 + inhibitor + Zn&lt;br /&gt;<br /> **[[4gbn5]] – hSIRT3 + inhibitor + carba-NAD + Zn&lt;br/ &gt;<br /> **[[4bv3]] – hSIRT3 + inhibitor + NAD + ADP-ribose + Zn&lt;br /&gt;<br /> **[[4bvb]], [[4bvh]] – hSIRT3 + inhibitor + ADP-ribose + Zn&lt;br /&gt;<br /> **[[4bvf]], [[4bvg]] – hSIRT3 + acetyl lysine peptide + inhibitor + Zn&lt;br /&gt;<br /> **[[5h4d]] – hSIRT3 + agonist + NAD + Zn&lt;br/ &gt;<br /> *SIRT4<br /> **[[5ojn]] – hSIRT4 + ADP-ribose + Zn – ''Xenopus tropicalis''&lt;br /&gt;<br /> *SIRT5<br /> **[[2b4y]], [[4bn4]] – hSIRT5 + ADP-ribose + Zn&lt;br /&gt;<br /> **[[2nyr]], [[5xhs]] – hSIRT5 + inhibitor + Zn&lt;br /&gt;<br /> **[[6ljk]], [[6ljm]], [[6ljn]] – hSIRT5 + peptide substrate + Zn&lt;br /&gt;<br /> **[[3rig]], [[3riy]], [[4f4u]] – hSIRT5 + acetyl lysine peptide + Zn&lt;br /&gt;<br /> **[[4gic]] – hSIRT5 + acetyl lysine peptide + carba-NAD + Zn&lt;br/ &gt;<br /> **[[4f56]] – hSIRT5 + peptide + intermediate + Zn&lt;br /&gt;<br /> **[[4hda]] – hSIRT5 + acetyl lysine peptide + resveratrol + Zn&lt;br /&gt;<br /> **[[6ace]], [[6acl]], [[6aco]], [[6acp]] – hSIRT5 + succinyl peptide + Zn&lt;br /&gt;<br /> **[[4utn]], [[4utr]], [[4utv]], [[4utx]], [[4utz]], [[4uu7]], [[4uu8]], [[4uua]], [[4uub]], [[6fkz]], [[6fky]], [[6flg]] – zSIRT5 + acetyl lysine peptide + inhibitor + Zn &lt;br /&gt;<br /> **[[6enx]], [[6eo0]], [[6eqs]] – zSIRT5 + inhibitor + Zn &lt;br /&gt;<br /> **[[5ojo]] – zSIRT5 + CPS1 peptide + Zn &lt;br /&gt;<br /> *SIRT6<br /> **[[3k35]], [[6xuy]], [[6xv6]] – hSIRT6 + ADP-ribose + Zn&lt;br /&gt;<br /> **[[5x16]] – hSIRT6 + oxolan derivative + Zn&lt;br /&gt;<br /> **[[6hoy]] – hSIRT6 + ADP-ribose + trichostatin + Zn&lt;br /&gt;<br /> **[[6qcd]], [[6qce]], [[6qch]], [[6qcj]] – hSIRT6 + ADP-ribose + quercetin derivative + Zn&lt;br /&gt;<br /> **[[3pki]], [[3pkj]] – hSIRT6 (mutant) + ADP-ribose derivative + Zn&lt;br /&gt;<br /> **[[3zg6]] – hSIRT6 + acetyl lysine peptide + ADP-ribose + Zn&lt;br /&gt;<br /> **[[5mfz]], [[5mfp]], [[5mf6]], [[5mgn]], [[6xv1]], [[6xvg]], [[6zu4]] – hSIRT6 + activator + Zn&lt;br /&gt;<br /> **[[5y2f]], [[7cl0]], [[7cl1]] – hSIRT6 + peptide activator + Zn&lt;br /&gt;<br /> *SIRT7<br /> **[[5iqz]] – hSIRT7 N-terminal&lt;br /&gt;<br /> *HDAC-like<br /> **[[1zz0]], [[5g1b]] – AbHDAH – ''Alcalifenaceae bacterium''&lt;br /&gt;<br /> **[[1zz3]], [[2gh6]], [[2vcg]], [[5g1a]], [[5g1c]], [[5g3w]] – AbHDAH + inhibitor &lt;br /&gt;<br /> **[[5g17]] – AbHDAH (mutant) + inhibitor &lt;br /&gt;<br /> **[[1zz1]] – AbHDAH + SAHA &lt;br /&gt;<br /> **[[5g0y]] – PaHDAH – ''Pseudomonas aeruginosa''&lt;br /&gt;<br /> **[[5li3]] – PaHDAH + inhibitor &lt;br /&gt;<br /> <br /> }}<br /> <br /> [[Category:Topic Page]]</div>

Openfox https://proteopedia.org/index.php?title=Hemolysin_3D_structures&diff=4433709 2026-03-29T10:39:16Z

<p>Openfox: Fix TreeAndMenu broken list structure</p> <hr /> <div>== 3D Structures of hemolysin ==<br /> <br /> Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}<br /> {{#tree:id=OrganizedByTopic|openlevels=0|<br /> *α-hemolysin or Alpha-toxin<br /> **[[3anz]], [[7ahl]] – SaHL-α – ''Staphylococcus aureus''&lt;br /&gt;<br /> * A full page in Proteopedia exploring [[7ahl]] is found [[Pore_forming_toxin,_α-hemolsyin|here]].&lt;br/&gt;<br /> **[[8jx2]], [[8jx3]], [[9kg0]], [[9kg1]], [[9kg3]], [[9kre]], [[9krf]], [[9ktm]], [[9kto]] – SaHL-α – Cryo EM&lt;br /&gt;<br /> **[[3m2l]], [[3m4d]], [[4p24]], [[4yhd]] - SaHL-α (mutant)&lt;br /&gt;<br /> **[[3m3r]], [[3m4e]] - SaHL-α (mutant) + β-cyclodextrin&lt;br /&gt;<br /> **[[4idj]], [[4u6v]] - SaHL-α + antibody&lt;br /&gt;<br /> **[[6u3t]], [[6u49]], [[6u4p]] - SaHL- + inhibitor&lt;br /&gt;<br /> **[[1ca1]], [[2wxt]] - CpHL + Cd + Zn – ''Clostridium perfringens''&lt;br /&gt;<br /> **[[1gyg]], [[1kho]], [[1qm6]] - CpHL + Zn &lt;br /&gt;<br /> **[[2wxu]], [[2wy6]] – CpHL (mutant) + Ca + Cd + Zn&lt;br /&gt;<br /> **[[1qmd]] - CpHL + Ca + Zn&lt;br /&gt;<br /> **[[1olp]] - HL + Ca + Zn – ''Clostridium absonum''&lt;br /&gt;<br /> **[[2vk9]] - HL – ''Clostridium novyi''&lt;br /&gt;<br /> **[[4hhf]] - sHL OD1 – scorpion&lt;br /&gt;<br /> **[[1lqh]], [[1lqi]], [[1lqq]] - sHL – NMR&lt;br /&gt;<br /> **[[4aei]] - sHL + antibody&lt;br /&gt;<br /> *β-hemolysin<br /> **[[3k55]] – SaHL-β)&lt;br /&gt;<br /> **[[3i5v]] - SaHL-β residues 35-330)&lt;br /&gt;<br /> **[[3i41]] - SaHL-β residues 35-330 (mutant)&lt;br /&gt;<br /> **[[3i46]], [[3i48]] - SaHL-β residues 35-330 (mutant)&lt;br /&gt; + metal ion<br /> *γ-hemolysin<br /> **[[2qk7]] – SaHL-γ component A (mutant) +B (mutant)&lt;br /&gt;<br /> **[[3b07]] - SaHL-γ component A+B&lt;br /&gt;<br /> **[[8gz7]] - SaHL-g component A+B – Cryo EM&lt;br /&gt;<br /> **[[4p1x]] - SaHL-γ component B (mutant)+C&lt;br /&gt;<br /> **[[4p1y]] - SaHL-γ component A + B (mutant)&lt;br /&gt;<br /> **[[6u3y]] - SaHL-γ residues 29-312 + panton-valentine leucocidin + inhibitor&lt;br /&gt;<br /> *δ-hemolysin<br /> **[[2kam]] – SaHL-δ - NMR<br /> *Hemolysin<br /> **[[6xd4]], [[8g33]] - HL – ''Elizabethkingia anophelis''&lt;br /&gt;<br /> **[[7m1u]] - MtHL (mutant) – ''Methanoculleus thermophilus''&lt;br /&gt;<br /> **[[7m1t]], [[7msu]] - MtHL + ATP&lt;br /&gt;<br /> **[[7cff]], [[7cfg]] - TpHL transmembrane domain 26-182 – ''Thermus parvatiensis''&lt;br /&gt;<br /> **[[7cfh]] - TpHL CBS domain 207-384 &lt;br /&gt;<br /> **[[7cfi]] - TpHL CBS domain + ATP&lt;br /&gt;<br /> **[[3o44]] – VcHL residues 161-741 – ''Vibrio cholerae''&lt;br /&gt;<br /> **[[1xez]] – VcHL (mutant)&lt;br /&gt;<br /> **[[6jkz]], [[6jl0]] - VvHL – ''Vibrio vulnificus''&lt;br /&gt;<br /> **[[6jl1]], [[6jl2]] - VvHL (mutant)&lt;br /&gt;<br /> **[[3a57]] – HL 2 – ''Vibrio parahaemolyticus''&lt;br /&gt;<br /> **[[8h09]] – VaHL – ''Vibrio alginolyticus''&lt;br /&gt;<br /> **[[8h0a]], [[8h0c]], [[8h0d]] – VaHL + fatty acid&lt;br /&gt;<br /> **[[8jc7]] – HL – ''Vibrio campbellii''- Cryo EM&lt;br /&gt;<br /> **[[3hvn]] – HL (mutant) – ''Streptococcus suis''&lt;br /&gt;<br /> **[[3fy3]], [[4w8q]], [[5kdk]], [[5keh]], [[5kf3]] – PmHL A residues 30-265 – ''Proteus mirabilis''&lt;br /&gt;<br /> **[[4w8r]], [[4w8s]], [[4w8t]], [[5kkd]], [[5sz8]], [[6pyk]], [[6pzl]], [[6q0p]] - PmHL A residues 30-234 (mutant)&lt;br /&gt;<br /> **[[1mt0]] – EcHL B ATP-binding domain – ''Escherichia coli''&lt;br /&gt;<br /> **[[5c21]], [[5c22]] - EcHL D residues 57-333 &lt;br /&gt;<br /> **[[6mrt]], [[6mru]], [[6mrw]] – EcHL E – Cryo EM&lt;br /&gt;<br /> **[[2wcd]] – EcHL E residues 2-303 – ''Escherichia coli''&lt;br /&gt;<br /> **[[1qoy]], [[4pho]], [[4phq]] - EcHL E (mutant)&lt;br /&gt;<br /> **[[2oai]], [[2r8d]] – HL corc_hlyc domain – ''Xylella fastidiosa''&lt;br /&gt;<br /> **[[2r2z]] – HL residues 346-435 – ''Enterococcus faecalis''&lt;br /&gt;<br /> **[[4wx3]], [[4wx5]] - HL – ''Grimontia hollisae''&lt;br /&gt;<br /> **[[2n67]], [[6d53]], [[6d5z]], [[6wa1]] - BcHL C-terminal – ''Bacillus cereus'' - NMR&lt;br /&gt;<br /> **[[2nrj]] - BcHL A 32-375&lt;br /&gt;<br /> **[[7nmq]] - BcHL D&lt;br /&gt;<br /> <br /> }}<br /> <br /> [[Category:Topic Page]]</div>

Openfox https://proteopedia.org/index.php?title=GTPase_KRas_3D_structures&diff=4433708 2026-03-29T10:39:15Z

<p>Openfox: Fix TreeAndMenu broken list structure</p> <hr /> <div>== 3D Structures of GTPase KRas ==<br /> <br /> Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}<br /> {{#tree:id=OrganizedByTopic|openlevels=0|<br /> *GTPase KRas apo binary complex with nucleotide<br /> **[[5uk9]] – hKRas + GCP + GDP – human &lt;br /&gt;<br /> **[[5vq2]] – hKRas + GTP &lt;br /&gt;<br /> **[[6god]], [[6mbq]] – hKRas + GNP &lt;br /&gt;<br /> **[[4lkp]], [[4obe]], [[5vq8]], [[5w22]], [[6mbt]], [[6mbu]], [[6p0z]], [[7tlk]] – hKRas + GDP &lt;br /&gt;<br /> **[[7lgi]] – hKRas + GDP - NMR&lt;br /&gt;<br /> **[[9o0r]], [[9o0s]] – hKRas + drug + GDP &lt;br /&gt;<br /> **[[7mqu]] – hKRas + drug + GDP - NMR&lt;br /&gt;<br /> *GTPase KRas apo complex with inhibitor<br /> **[[5kyk]] – hKRas + inhibitor &lt;br /&gt;<br /> **[[6v5l]], [[7tle]], [[8afb]], [[8afc]], [[8afd]], [[8azr]], [[8azv]], [[8jhl]], [[8onv]], [[8s8c]], [[9bai]], [[9bak]], [[9baj]], [[9qpz]] – hKRas + GDP + inhibitor &lt;br /&gt;<br /> *GTPase KRas apo complex with protein<br /> **[[6h46]] – hKRas + darpin K13 + GDP &lt;br /&gt;<br /> **[[6h47]] – hKRas + darpin K19 &lt;br /&gt;<br /> **[[5mlb]], [[5o2s]] – hKRas + darpin K27 + GDP &lt;br /&gt;<br /> **[[5mla]], [[5o2t]] – hKRas + darpin 55 + GSP &lt;br /&gt;<br /> **[[5o2s]], [[5ufe]] – hKRas + R11.1.6 + GNP &lt;br /&gt;<br /> **[[9c15]], [[9cmv]] – hKRas + p110 alpha + GNP &lt;br /&gt;<br /> **[[2msc]], [[2msd]] – hKRas + apolipoprotein + GDP - NMR&lt;br /&gt;<br /> **[[2mse]] – hKRas + apolipoprotein + A-Raf + GDP - NMR&lt;br /&gt;<br /> **[[8dgt]] – hKRas + MKK1 + B-Raf + 14-3-3 protein zeta + ATPgS – Cryo EM&lt;br /&gt;<br /> **[[6pts]], [[6ptw]] – hKRas + apolipoprotein + C-Raf + GNP - NMR&lt;br /&gt;<br /> **[[6ob2]] – hKRas + neurofibromin + GNP &lt;br /&gt;<br /> **[[8qu8]] – hKRas + elongin B,C + pVHL + cullin-2 + Rbx1 + inhibitor + GDP – Cryo EM &lt;br /&gt;<br /> **[[6v65]], [[6v6f]] – hKRas + neurofibromin + Hspred1 + GNP &lt;br /&gt;<br /> **[[6yr8]], [[6yxw]], [[7ny8]] – hKRas + affirmer K6 + GDP &lt;br /&gt;<br /> **[[8rro]] – hKRas + Tcr + HLA + microglobulin + drug + GNP &lt;br /&gt;<br /> *GTPase KRas4A apo<br /> **[[8t72]] – hKRas + PNP&lt;br /&gt;<br /> **[[8t71]] – hKRas + GDP&lt;br /&gt;<br /> **[[8t75]] – hKRas + C-Raf + PNP&lt;br /&gt;<br /> **[[8t74]] – hKRas + Raf1 + PNP&lt;br /&gt;<br /> **[[7vvb]] – hKRas + SIN1 + PNP&lt;br /&gt;<br /> **[[9g0y]], [[9g4b]], [[9ggt]], [[9ggu]], [[9ggv]], [[9ggw]], [[9ggx]], [[9ggy]], [[9ggz]], [[9gh0]], [[9gh1]], [[9gh2]] – hKRas + GDP + inhibitor&lt;br /&gt;<br /> *GTPase KRas2B apo<br /> **[[7kyz]] – hKRas + GDP - NMR&lt;br /&gt;<br /> **[[9gtk]] – hKRas + Darpin + GDP&lt;br /&gt;<br /> *GTPase KRas4B apo<br /> **[[6m9w]], [[8ecr]] – hKRas + GDP&lt;br /&gt;<br /> **[[6w4e]] – hKRas + GDP - NMR&lt;br /&gt;<br /> **[[6vc8]] – hKRas + PNP&lt;br /&gt;<br /> **[[8eie]] – hKRas + GNP&lt;br /&gt;<br /> **[[5tar]], [[5tb5]], [[7q9u]] – hKRas + GMP-PDE d + farnesyl + GDP &lt;br<br /> **[[6w4e]] – hKRas + apolipoprotein + GTP - NMR&lt;br /&gt;<br /> **[[6w4f]] – hKRas + apolipoprotein + GDP - NMR&lt;br /&gt;<br /> **[[6vjj]], [[6xhb]], [[6xi7]] – hKRas + Raf1/CRaf + GNP<br /> *GTPase KRasX2 apo<br /> **[[8dgs]], [[8dgt]] – hKRas + MKK1 + B-Raf + 14-3-3 protein zeta + ATPgS – Cryo EM&lt;br /&gt;<br /> *GTPase KRas with oncogenic mutated 12G binary complex with nucleotide<br /> **[[5vpi]], [[5vpz]], [[5vq6]], [[6mnx]] – hKRas (mutant) + GTP &lt;br /&gt;<br /> **[[3gft]], [[6mta]] – hKRas (mutant) + GTP analog &lt;br /&gt;<br /> **[[5usj]], [[5vpy]], [[6e6f]], [[6goe]], [[6gof]], [[6gog]], [[6gom]], [[6o36]], [[6o46]], [[8ebz]] – hKRas (mutant) + GNP &lt;br /&gt;<br /> **[[4l8g]], [[4ldj]], [[4lrw]], [[4ql3]], [[4tq9]], [[4wa7]], [[5uqw]], [[5us4]], [[5vp7]], [[5vq0]], [[5vq1]], [[5whd]], [[6asa]], [[6ase]], [[6bof]], [[6e6g]], [[6mqg]], [[6mqn]], [[6ms9]], [[6pq3]], [[6ws2]], [[6ws4]], [[7c40]], [[7eyx]], [[7f0w]], [[7kmr]], [[8fmi]], [[8fmj]], [[8fmk]], [[8g4f]], [[8stm]], [[8stn]], [[8tvk]], [[8txj]], [[8ty2]], [[8ty8]], [[8ty9]] – hKRas (mutant) + GDP &lt;br /&gt;<br /> **[[7g42]], [[8g47]], [[8g4h]] – hKRas (mutant) + GDP – Cryo EM&lt;br /&gt;<br /> **[[9dmm]] – hKRas (mutant) + drug + GDP &lt;br /&gt;<br /> **[[4dsn]], [[6bp1]], [[6quu]] – hKRas (mutant) + GCP &lt;br /&gt;<br /> **[[7lz5]] – hKRas (mutant) + GMPPCP &lt;br /&gt;<br /> *GTPase KRas with oncogenic mutated 12G complex with inhibitor<br /> **[[4dso]] – hKRas (mutant) + inhibitor + GSP &lt;br /&gt;<br /> **[[4dst]], [[6gj5]], [[6gj6]], [[6gj7]], [[6gj8]], [[6quv]], [[6quw]], [[6qux]] – hKRas (mutant) + inhibitor + GCP &lt;br /&gt;<br /> **[[4nmm]], [[7ok3]], [[7ok4]] – hKRas (mutant) + inhibitor &lt;br /&gt;<br /> **[[4dsu]], [[4luc]], [[4lv6]], [[4lyf]], [[4lyh]], [[4lyj]], [[4m1o]], [[4m1s]], [[4m1t]], [[4m1w]], [[4m1y]], [[4m21]], [[4m22]], [[4epr]], [[4ept]], [[4epv]], [[4epw]], [[4epx]], [[4epy]], [[4q01]], [[4q02]], [[4q03]], [[4pzy]], [[4pzz]], [[5f2e]], [[5vbm]], [[5v6s]], [[5v6v]], [[5v9o]], [[5v9u]], [[5xco]], [[5yxz]], [[5yy1]], [[6ark]], [[6b0v]], [[6b0y]], [[6n2j]], [[6n2k]], [[6oim]], [[6p8w]], [[6p8x]], [[6p8y]], [[6p8z]], [[6pgo]], [[6pgp]], [[6t5b]], [[6tam]], [[6tan]], [[6usx]], [[6usz]], [[6ut0]], [[6zl5]], [[7a1w]], [[7a1x]], [[7a1y]], [[7a47]], [[7acq]], [[7ew9]], [[7ewa]], [[7ewb]], [[7o70]], [[7oo7]], [[7r0m]], [[7r0n]], [[7r0q]], [[7rp4]], [[7tlg]], [[7u8h]], [[7ycc]], [[7yce]], [[8aq5]], [[8aq7]], [[8azx]], [[8azy]], [[8azz]], [[8b00]], [[8b6i]], [[8b78]], [[8cx5]], [[8dni]], [[8dnj]], [[8dnk]], [[8qug]], [[8r7w]], [[8r7x]], [[8t4v]], [[8txe]], [[8txg]], [[8txh]], [[8txk]], [[8un3]], [[8un4]], [[8un5]], [[8v3a]], [[8wb1]], [[8x6r]], [[9bl0]], [[9e5d]], [[9e5f]], [[9e9h]], [[9e9i]], [[9gbj]], [[9kpn]], [[9u50]], [[9u5t]] – hKRas (mutant) + GDP + inhibitor &lt;br /&gt;<br /> **[[5ocg]], [[5oco]], [[5oct]], [[5vbz]], [[6f76]], [[6fa1]], [[6fa2]], [[6fa3]], [[6fa4]], [[6gqt]], [[6gqx]], [[6gqw]], [[6gqy]], [[8jgd]], [[8v39]] – hKRas (mutant) + GNP + inhibitor &lt;br /&gt;<br /> **[[6zli]] – hKRas (mutant) + GCP + inhibitor &lt;br /&gt;<br /> **[[7aca]], [[7acf]], [[7ach]], [[7t47]] – hKRas (mutant) + GPPCP + inhibitor &lt;br /&gt;<br /> **[[9usb]] – hKRas (mutant) + GPPNP + inhibitor &lt;br /&gt;<br /> **[[5v71]], [[5v9l]], [[6t5v]] – hKRas (mutant) + GDP + quinazoline inhibitor &lt;br /&gt;<br /> *GTPase KRas with oncogenic mutated 12G complex with protein<br /> **[[5wha]], [[5whb]] – hKRas (mutant) + miniprotein + GDP &lt;br /&gt;<br /> **[[5whe]], [[5wlb]], [[5wpl]], [[5wpm]] – hKRas (mutant) + miniprotein + GNP &lt;br /&gt;<br /> **[[7scw]], [[7scx]] – hKRas (mutant) + RALGDS-like + GSP &lt;br /&gt;<br /> **[[5ufq]] – hKRas (mutant) + R11.1.6 + GNP &lt;br /&gt;<br /> **[[6wgn]] – hKRas (mutant) + peptide inhibitor + GNP &lt;br /&gt;<br /> **[[7c41]], [[7w5r]], [[7yuz]] – hKRas (mutant) + peptide inhibitor + GDP &lt;br /&gt;<br /> **[[7mdp]], [[7rp2]], [[7rp3]] – hKRas (mutant) + antibody + GDP &lt;br /&gt;<br /> **[[7yv1]], [[8vgq]] – hKRas (mutant) + antibody + inhibitor + GDP &lt;br /&gt;<br /> **[[8be3]], [[8ezg]] – hKRas (mutant) + nanobody + GDP &lt;br /&gt;<br /> **[[8f0m]] – hKRas (mutant) + monobody + GDP &lt;br /&gt;<br /> **[[8be4]], [[8be5]] – hKRas (mutant) + nanobody + son of sevenless + GDP &lt;br /&gt;<br /> **[[7rov]] – hKRas (mutant) + peptide inhibitor + GMPPCP &lt;br /&gt;<br /> **[[8jjs]] – hKRas (mutant) + peptide inhibitor + GDP &lt;br /&gt;&lt;br&gt;+ MKK1 + B-Raf + 14-3-3 protein zeta + ATPgS – Cryo EM&lt;br /&gt;<br /> **[[6xgu]], [[6xgv]] – hKRas (mutant) + C-Raf + GNP&lt;br /&gt;<br /> **[[6cc9]], [[6cch]], [[6ccx]] – hKRas (mutant) + apolipoprotein + inhibitor + GNP - NMR&lt;br /&gt;<br /> **[[6epl]] – hKRas (mutant) + son of sevenless homolog 1&lt;br /&gt;<br /> **[[7kfz]] – hKRas (mutant) + son of sevenless homolog 1 + GNP&lt;br /&gt;<br /> **[[6epm]], [[6epn]], [[6epo]], [[6epp]] – hKRas (mutant) + son of sevenless homolog 1 + inhibitor&lt;br /&gt;<br /> **[[6ob3]] – hKRas (mutant) + neurofibromin + GNP &lt;br /&gt;<br /> **[[8qvu]], [[8qw6]], [[8qw7]] – hKRas (mutant) + elongin B,C + pVHL + GDP &lt;br /&gt;<br /> **[[9bgh]], [[9bho]], [[9bhp]], [[9bhq]] – hKRas (mutant) + PPIASE + inhibitor + GDP &lt;br /&gt;<br /> **[[8g9p]], [[8g9q]], [[8tbf]], [[8tbh]], [[8tbj]], [[8tbk]], [[8tbl]], [[8tbm]], [[8tbn]], [[9ax6]], [[9bfv]], [[9bfw]], [[9bfx]], [[9bfy]], [[9bfz]], [[9bg1]], [[9bg2]], [[9bg4]], [[9bg7]], [[9bi1]], [[9bi2]], [[9ct7]], [[9e3s]] – hKRas (mutant) + PPIASE + inhibitor + GNP &lt;br /&gt;<br /> **[[9bg5]], [[9bg6]], [[9bga]], [[9bgb]], [[9bgc]], [[9ct8]], [[9ct9]], [[9cta]], [[9ctb]] – hKRas (mutant) + PPIASE + drug + GNP &lt;br /&gt;<br /> **[[6t5u]] – KRas (mutant) + V-ki-ras2 + inhibitor + GDP -hedgehog &lt;br /&gt;<br /> *GTPase KRas4A with oncogenic mutated 12G<br /> **[[8t73]] – hKRas (mutant) + GDP&lt;br /&gt;<br /> *GTPase KRas4B with oncogenic mutated 12G<br /> **[[7t1f]], [[8blr]], [[8cpr]], [[8edy]], [[8eer]] – hKRas (mutant) + GDP&lt;br /&gt;<br /> **[[6cu6]] – hKRas (mutant) + PNP&lt;br /&gt;<br /> **[[8b69]] – hKRas (mutant) + Rgl2 + GNP &lt;br /&gt;<br /> **[[7rsc]], [[7rse]] – hKRas (mutant) + apolipoprotein + GSP - NMR&lt;br /&gt;<br /> **[[6xha]], [[8epw]] – hKRas (mutant) + Raf1/CRaf + PNP<br /> **[[7lc1]], [[7lc2]] – hKRas (mutant) + SIN1+ GNP &lt;br /&gt;<br /> **[[7rpz]], [[7rt1]], [[7rt2]], [[7rt3]], [[7rt4]], [[7rt5]], [[9kpm]], [[9kpn]] – hKRas (mutant) + GDP + inhibitor&lt;br /&gt;<br /> <br /> }}<br /> <br /> [[Category:Topic Page]]</div>

Openfox https://proteopedia.org/index.php?title=Exportin_3D_structures&diff=4433707 2026-03-29T10:39:14Z

<p>Openfox: Fix TreeAndMenu broken list structure</p> <hr /> <div>==3D structures of exportin==<br /> <br /> Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}<br /> {{#tree:id=OrganizedByTopic|openlevels=0|<br /> *XPO-1 or chromosome region maintenance protein<br /> **[[4bsm]], [[4bsn]] – hXPO – human&lt;br /&gt;<br /> **[[1w9c]] – hXPO C terminal 6 heat repeats &lt;br /&gt;<br /> **[[3vyc]] – yXPO (mutant) - yeast&lt;br /&gt;<br /> **[[4fgv]] – XPO – ''Chaetomium thermophilum''&lt;br /&gt;<br /> *XPO-1 complexes<br /> **[[3gb8]] – hXPO + RNA U transporter 1 &lt;br /&gt;<br /> **[[3gjx]] – hXPO + RNA U transporter 1 + Ran&lt;br /&gt;<br /> **[[5dis]] – hXPO + Ran + RNA U transporter 1 + MBP&lt;br /&gt;<br /> **[[5yro]] – hXPO (mutant) + Ran + RANBP1 &lt;br /&gt;<br /> **[[6tvo]] – hXPO (mutant) + Ran + antibiotic&lt;br /&gt;<br /> **[[7b51]] – hXPO + Ran + GTP&lt;br /&gt;<br /> **[[8urj]] – hXPO + Ran + REV HIV + RRE HIV – Cryo EM&lt;br /&gt;<br /> **[[9b62]] – hXPO + RanGTP + Ubc9 + Sumo1 + RanBP2 RanGAP1 – Cryo EM&lt;br /&gt;<br /> **[[3wyf]] – yXPO + Ran + RanBP1 &lt;br /&gt;<br /> **[[3m1i]], [[4gpt]], [[4gmx]], [[4hat]], [[4hb2]], [[5jlj]] – yXPO (mutant) + Ran + RanBP1 &lt;br /&gt;<br /> **[[3wyg]] – yXPO + Ran + PKI-α&lt;br /&gt;<br /> **[[5zpu]], [[5ytb]], [[5yst]], [[5uro]], [[9vm1]], [[6lq9]] - yXPO (mutant) + Ran + RanBP1 + GTP&lt;br /&gt;<br /> **[[6x2m]], [[6x2o]], [[6xjp]], [[6xjr]], [[6xjs]], [[6xjt]], [[6xju]] - yXPO (mutant) + Ran + RanBP1 + GNP&lt;br /&gt;<br /> **[[7l5e]] – yXPO + Ran + RanBP1 + GNP + drug&lt;br /&gt;<br /> **[[5ysu]], [[6m60]], [[6m6x]] - yXPO (mutant) + Ran + RanBP1 + GTP + drug&lt;br /&gt;<br /> **[[4hau]], [[4hav]], [[4haw]], [[4hax]], [[4hay]], [[4haz]], [[4hb0]], [[4hb3]], [[4hb4]] – yXPO (mutant) + Ran + RanBP1 + antibiotic&lt;br /&gt;<br /> **[[3nby]], [[3nbz]], [[3nc0]] – mXPO + RNA U transporter 1 + RanBP1 - mouse&lt;br /&gt;<br /> **[[3nc1]] – mXPO + RanBP1&lt;br /&gt;<br /> **[[2l1l]] – hXPO residues 504-630 + PKI-α - NMR&lt;br /&gt;<br /> *XPO-1 complexes containing peptide<br /> **[[6x2p]], [[6x2s]] - yXPO + Ran + RanBP1 + MKK1 peptide + GNP&lt;br /&gt;<br /> **[[6x2x]] - yXPO (mutant) + Ran + RanBP1 + MKK1 peptide + GNP&lt;br /&gt;<br /> **[[5dh9]], [[5dha]], [[5dhf]], [[5di9]], [[5uwj]], [[5dif]] - yXPO (mutant) + Ran + RanBP1 + signal peptide&lt;br /&gt;<br /> **[[5uwo]], [[5uwp]], [[5uwq]], [[5uwr]], [[5uws]], [[5uwt]], [[5uwu]], [[5uww]], [[5uwi]], [[5uwh]] - yXPO + Ran + RanBP1 + signal peptide&lt;br /&gt;<br /> **[[6cit]], [[6a38]] - yXPO + Ran + RanBP1 + NS2 peptide + GNP&lt;br /&gt;<br /> **[[6a3a]], [[6a3b]], [[6a3c]], [[6a3e]] - yXPO (mutant) + Ran + RanBP1 + NS2 peptide + GTP&lt;br /&gt;<br /> **[[6x2r]] - yXPO + Ran + RanBP1 + eIF4E peptide + GNP&lt;br /&gt;<br /> **[[6x2u]], [[6x2v]] - yXPO + Ran + RanBP1 + PKINES peptide + GNP&lt;br /&gt;<br /> **[[6x2w]] - yXPO (mutant) + Ran + RanBP1 + PKINES peptide + GNP&lt;br /&gt;<br /> **[[8qyz]] – yXPO (mutant) + Ran + RanGTP + HINES2 peptide + GTP&lt;br /&gt;<br /> **[[6x2x]], [[6x2y]] - yXPO (mutant) + Ran + RanBP1 + MDIA2NES peptide + GNP&lt;br /&gt;<br /> **[[6a3a]], [[6a3b]], [[6a3c]], [[6a3e]] - yXPO (mutant) + Ran + RanBP1 + NS2 peptide + GTP&lt;br /&gt;<br /> **[[5xoj]] - yXPO (mutant) + GSP1P + PKI-a + NUP42 peptide + GTP&lt;br /&gt;<br /> *XPO-4<br /> **[[5dlq]] – mXPO (mutant) + Ran + EIF5A1&lt;br /&gt;<br /> * XPO-5<br /> **[[5yu7]] – hXPO &lt;br /&gt;<br /> **[[5yu6]] – hXPO + peptide + Ran &lt;br /&gt;<br /> * [[3a6p]] – hXPO + peptide + pre-microRNA &lt;br /&gt;<br /> *XPO-cse<br /> **[[1z3h]] – yXPO &lt;br /&gt;<br /> *XPO-msn5<br /> **[[9d43]] – yXPO – Cryo EM&lt;br /&gt;<br /> **[[9dxm]] – yXPO + RanGTP – Cryo EM&lt;br /&gt;<br /> **[[9d45]] – yXPO + RanGTP + Pho4 – Cryo EM&lt;br /&gt;<br /> *XPO-t<br /> **[[3ibv]] – fyXPO – fission yeast&lt;br /&gt;<br /> **[[3icq]] – fyXPO + Ran homolog + RNA &lt;br /&gt;<br /> }}<br /> <br /> [[Category:Topic Page]]</div>

Openfox https://proteopedia.org/index.php?title=Gp41_3D_Structures&diff=4433706 2026-03-29T10:39:14Z

<p>Openfox: Fix TreeAndMenu broken list structure</p> <hr /> <div>== 3D Structures of Gp41 ==<br /> <br /> Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}<br /> {{#tree:id=OrganizedByTopic|openlevels=0|<br /> *Gp41 from HIV-1; Domains – helix-bundle or coiled-coil – 1-40; ectodomain – 93-165;core 509-661; N-peptide 541-590; transmembrane 670-709; tail 750-854<br /> **[[2zfc]], [[3u91]] – Gp41 N-terminal residues 1-49&lt;br /&gt;<br /> **[[3k9a]] – Gp41 residues 1-108 (mutant)&lt;br /&gt;<br /> **[[8f3a]], [[8f3b]] – Gp41 helix bundle &lt;br /&gt;<br /> **[[1aik]], [[1df4]], [[1df5]], [[1dlb]], [[1jpx]], [[1qr8]], [[1qr9]], [[1szt]], [[3vu5]], [[3vu6]], [[8w2y]], [[8w32]], [[8w37]], [[9arn]], [[9arp]], [[9hs7]] – Gp41 N-peptide domain&lt;br /&gt;<br /> **[[1env]], [[1f23]], [[1i5x]], [[1i5y]], [[1k33]], [[1k34]], [[2ot5]], [[3cp1]], [[3cyo]], [[5ka6]], [[5ka5]], [[4i2l]] – Gp41 N-peptide domain (mutant)&lt;br /&gt;<br /> **[[5jyn]], [[6b3u]], [[6dln]], [[7loi]] – Gp41 transmembrane domain - NMR&lt;br /&gt;<br /> **[[2mk3]] – Gp41 ectodomain - NMR&lt;br /&gt;<br /> **[[5vwl]] – Gp41 tail domain - NMR&lt;br /&gt; <br /> **[[6uju]], [[6ujv]], [[7loh]] – Gp41 transmembrane+tail domains (mutant) - NMR&lt;br /&gt;<br /> **[[3f4y]], [[3f4z]], [[3f50]] – Gp41 + Gp120 six-helix bundle&lt;br /&gt;<br /> **[[8duo]] – Gp41 – T4 phage - Cryo EM &lt;br /&gt;<br /> *Gp41 complexes<br /> **[[6v0r]], [[6vfl]], [[6vl5]], [[6vrw]], [[7l6o]], [[7l7t]], [[7l7u]], [[7sc5]], [[7ska]], [[8f7t]], [[8fad]], [[8fae]] – Gp41 core + Gp120 – Cryo EM &lt;br /&gt;<br /> **[[8tgw]] – Gp41 core (mutant) + Gp120 (mutant) – Cryo EM &lt;br /&gt;<br /> **[[4nco]], [[4nrx]], [[5c7k]], [[5cjx]], [[5d9q]], [[5fyj]], [[5fyk]], [[5i8h]], [[5js9]], [[5jsa]], [[5um8]], [[5utf]], [[5uty]], [[5v8l]], [[5v8m]], [[5w6d]], [[6ch7]], [[6ch8]], [[6ch9]], [[6chb]], [[6ck9]], [[6mco]], [[6mdt]],<br /> * [[6vkn]], [[6wix]], [[8d0y]], [[8e1p]] – Gp41 core + Gp120 + antibody&lt;br /&gt;<br /> **[[3j5m]], [[6mpg]], [[6mph]], [[6n1v]], [[6n1w]], [[6x96]], [[6x97]], [[7kde]], [[7lg6]], [[7lu9]], [[7lxm]], [[7lxn]], [[7ly9]], [[7mdt]], [[7mdu]], [[7mxe]], [[7n28]], [[7rsn]], [[7rso]], [[7sd3]], [[7sq1]], [[7t73]], [[7t74]], [[7t75]], [[7t76]], [[7t77]], [[7t9a]], [[7t9b]], [[7tco]], [[7tfn]], [[7tfo]], [[7ugn]], [[7ugp]], [[7ugq]], [[7ur6]], [[7z3a]], [[7zlk]], [[8d4r]], [[8d53]], [[8dok]], [[8dow]], [[8dp1]], [[8euu]], [[8euv]], [[8euw]], [[8f92]], [[8f9g]], [[8f9m]], [[8fis]], [[8fk5]], [[8fl1]], [[8flw]], [[8g4m]], [[8g85]], [[8g9w]], [[8g9x]], [[8g9y]], [[8gas]], [[8jtd]], [[8jtm]], [[8s2e]], [[8sal]], [[8san]], [[8saq]], [[8sar]], [[8sas]], [[8sat]], [[8sau]], [[8sav]], [[8saw]], [[8sax]], [[8say]], [[8sb0]], [[8sb1]], [[8sb2]], [[8sb3]], [[8sb4]], [[8sb5]], [[8sw3]], [[8sw4]], [[8sw7]], [[8sww]], [[8swx]], [[8t2e]], [[8t2f]], [[8t49]], [[8t4a]], [[8t4b]], [[8t4d]], [[8t4k]], [[8t4l]], [[8tgo]], [[8tng]], [[8tnh]], [[8tni]], [[8tnu]], [[8to7]], [[8to9]], [[8top]], [[8tox]], [[8tq1]], [[8ult]], [[8ulu]], [[8vfv]], [[8vgv]], [[8vgw]], [[8vh1]], [[8vh3]], [[9atz]], [[9aug]], [[9auh]], [[9aui]], [[9axd]], [[9axi]], [[9axk]], [[9ay6]], [[9ays]], [[9ayv]], [[9ber]], [[9bew]], [[9bf6]], [[9bnk]], [[9bnl]], [[9bnm]], [[9bnp]], [[9bth]], [[9bti]], [[9btj]], [[9btl]], [[9btv]], [[9d1w]], [[9d3d]], [[9d7g]], [[9d7h]], [[9d7i]], [[9d7o]], [[9d7p]], [[9d98]], [[9dmb]], [[9ehl]], [[9ehm]], [[9evz]], [[9nhh]], [[9nhi]], [[9nhj]], [[9nhk]], [[9nhl]], [[9nhm]], [[9nhn]], [[9nho]], [[9ni9]] – Gp41 core + Gp120 Clade A/E + antibody – Cryo EM&lt;br /&gt;<br /> **[[6ot1]], [[6x98]], [[7uoj]], [[8fr6]], [[8g4t]], [[8gje]], [[8tkc]], [[8tl2]], [[8tl3]], [[8tl4]], [[8tl5]], [[8tr3]] – Gp41 (mutant) + Gp120 Clade A/E (mutant) + antibody – Cryo EM&lt;br /&gt;<br /> **[[9d90]] – Gp41 (mutant) + Gp120 (mutant) + antibody + CD4 – Cryo EM&lt;br /&gt;<br /> **[[8czz]], [[8dto]], [[8g6u]], [[8swv]] – Gp41 + Gp120 Clade A/E (mutant) + antibody – Cryo EM&lt;br /&gt;<br /> **[[6nm6]] [[6nnf]], [[6nnj]] – Gp41 core (mutant) + Gp120 + antibody&lt;br /&gt;<br /> **[[6opa]], [[6vzi]], [[6w03]] – Gp41 core + Gp160 + antibody&lt;br /&gt;<br /> **[[6oz4]], [[6ozc]], [[6vn0]], [[7t9t]], [[7tcn]], [[7ugo]], [[8c8t]], [[8saz]], [[8sxi]], [[8sxj]], [[8tjr]], [[8ulr]], [[8uls]], [[9bio]], [[9f02]] – Gp41 core + Gp160 + antibody – Cryo EM&lt;br /&gt;<br /> **[[8tjs]] – Gp41 core (mutant) + Gp160 + antibody – Cryo EM&lt;br /&gt;<br /> **[[8ttw]] – Gp41 core (mutant) + Gp160 (mutant) + antibody – Cryo EM&lt;br /&gt;<br /> **[[7lpn]] – Gp41 core + Gp160 + VHH – Cryo EM&lt;br /&gt;<br /> **[[4cc8]], [[6cdi]], [[6cuf]], [[6cue]], [[6mn7]], [[6nf2]], [[6nf5]], [[6nfc]], [[6nqd]], [[6okp]], [[6olp]], [[6orn]], [[6oro]], [[6orp]], [[6orq]], [[6osy]], [[6pw6]], [[6u59]], [[6uda]], [[6udj]], [[6udk]], [[6ulc]], [[6um6]], [[6um7]], [[6v8x]], [[6v8z]], [[6vi0]], [[6vlr]], [[6vo0]], [[6vo1]], [[6vo3]], [[6vtt]], [[6vy2]], [[6x9r]], [[6x9s]], [[6x9t]], [[6x9u]], [[6x9v]], [[6xrt]], [[7l86]], [[7l87]], [[7l88]], [[7l89]], [[7l8a]], [[7l8b]], [[7l8c]], [[7l8d]], [[7l8s]], [[7l8t]], [[7l8u]], [[7l8w]], [[7l8x]], [[7l8y]], [[7l8z]], [[7l90]], [[7ll1]], [[7ll2]], [[7llk]], [[7lo6]], [[7lua]], [[7mxd]], [[7n65]], [[7pc2]], [[7rai]], [[7t74]], [[7t76]], [[7ucg]] – Gp41 core + Gp120 + antibody – Cryo EM&lt;br /&gt;<br /> **[[4tvp]], [[6utk]], [[6v6w]], [[7kmd]], [[7ucf]], [[8d50]] – Gp41 core + Gp120 + antibody &lt;br /&gt;<br /> **[[6nc2]], [[6nc3]] – Gp41 core (mutant) + Gp120 + antibody – Cryo EM&lt;br /&gt;<br /> **[[5thr]], [[5u1f]] – Gp41 core + Gp120 + antibody + CD4&lt;br /&gt;<br /> **[[6u0l]], [[6u0n]], [[6x5b]], [[8d5c]] – Gp41 core + Gp120 + antibody + CD4 – Cryo EM&lt;br /&gt;<br /> **[[6opn]], [[6x5c]], [[8fyi]], [[8fyj]] – Gp41 core + Gp160 + CD4 – Cryo EM&lt;br /&gt;<br /> **[[6opo]], [[6opp]], [[6opq]] – Gp41 core + Gp160 + antibody + CD4 – Cryo EM&lt;br /&gt;<br /> **[[7txd]] – Gp41 core + Gp120 + darpin + CD4 – Cryo EM&lt;br /&gt;<br /> **[[6um5]] – Gp41 core + Gp120 + antibody + CH848 – Cryo EM&lt;br /&gt;<br /> **[[6vpx]], [[7lok]] – Gp41 core + Gp120 + antibody + peptide – Cryo EM&lt;br /&gt;<br /> **[[2r3c]], [[2r5b]], [[2r5d]], [[2z2t]], [[2zzo]], [[3aha]], [[3l36]], [[3l37]], [[3vgy]], [[3vh7]], [[3vie]], [[3vtp]], [[5h0n]], [[5zpw]] – Gp41 N-peptide domain + fusion inhibitor peptide&lt;br /&gt;<br /> **[[5hm1]] – Gp41 core +llama antibody &lt;br /&gt;<br /> **[[3p30]] – Gp41 ectodomain + antibody&lt;br /&gt;<br /> **[[8vwe]] – Gp41 helix bundle + antibody&lt;br /&gt;<br /> **[[3o3x]] – arGp41 - artificial&lt;br /&gt;<br /> **[[4dzu]] – arGp41 + 3-α&lt;br /&gt;<br /> **[[4dzv]] – arGp41 + 4-α/β&lt;br /&gt;<br /> *GP41 from Simian Immunodeficiency Virus<br /> **[[2siv]] – Gp41 core&lt;br /&gt;<br /> **[[1qce]], [[2ezo]], [[2ezp]], [[2ezq]], [[2ezr]], [[2ezs]] – Gp41 core - NMR&lt;br /&gt;<br /> **[[1jq0]], [[1qbz]] – Gp41 core (mutant)&lt;br /&gt;<br /> **[[7t2p]], [[7t4g]], [[8dua]] – Gp41 core + Gp120 + antibody – Cryo EM&lt;br /&gt;<br /> *GP41 from Pseudomonas virus<br /> **[[8eon]], [[9b45]] – Gp41 in capsid complex – Cryo EM&lt;br /&gt;<br /> <br /> }}<br /> <br /> [[Category:Topic Page]]</div>

Openfox https://proteopedia.org/index.php?title=FOX_3D_structures&diff=4433705 2026-03-29T10:39:12Z

<p>Openfox: Fix TreeAndMenu broken list structure</p> <hr /> <div>Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}} - For a general description of the protein see [[FOX]] ([[Forkhead box protein|Forkhead Box]])<br /> {{#tree:id=OrganizedByTopic|openlevels=0|<br /> *FOXA1<br /> **[[8vfy]], [[8vfz]], [[8vg1]], [[8vg2]] – hFOXA1 + nucleosome – human – Cryo EM&lt;br /&gt;<br /> *FOXA2<br /> **[[5x07]], [[7yze]], [[7yzf]] – hFOXA2 DBD 149-273 + DNA&lt;br /&gt;<br /> *FOXC2<br /> **[[6akp]], [[6ako]], [[6lbm]], [[6o3t]] – hFOXC2 DBD 72-172 + DNA&lt;br /&gt;&lt;br&gt; <br /> *FOXG1<br /> **[[7cby]] – hFOXG1 DBD 178-281 + DNA&lt;br /&gt;<br /> *FOXH1<br /> **[[7yzb]] – hFOXH1 + DNA &lt;br /&gt;<br /> **[[7yz7]], [[7yza]], [[7yzc]], [[7yzd]] – zFOXH1 + DNA - zebrafish&lt;br /&gt;<br /> **[[7yzg]] – FOXH1 + DNA - frog&lt;br /&gt;<br /> *FOXK1<br /> **[[8bzm]] – hFOXK1 141-235 + Flf-1 + DNA&lt;br /&gt;<br /> **[[2a3s]], [[2d2w]] – mFOXK1 DBD 287-387 – NMR&lt;br /&gt;<br /> *FOXK2<br /> **[[2c6y]] – hFOXK2 DBD 251-348 + DNA&lt;br /&gt;<br /> *FOXL2<br /> **[[7vou]], [[7vov]], [[7vox]] – hFOXL2 DBD 46-148 + DNA&lt;br /&gt;<br /> *FOXM1<br /> **[[3g73]], [[7fj2]] – hFOXM1 DBD 222-360 + DNA&lt;br /&gt;<br /> **[[6osw]] – zFOXM1 1-106, 569-623 (mutant) - NMR&lt;br /&gt;<br /> *FOXN1<br /> **[[5ocn]] – hFOXN1 forkhead domain 270-366&lt;br /&gt;<br /> **[[6el8]] – hFOXN1 forkhead domain + DNA &lt;br /&gt;<br /> *FOXN3<br /> **[[6ncm]], [[6nce]] – hFOXN3 DBD 112-210 + DNA&lt;br /&gt;<br /> *FOXO1<br /> **[[6qvw]] - hFOXO1 DBD – human - NMR&lt;br /&gt;<br /> **[[3co6]], [[3coa]], [[3co7]], [[5dui]], [[6lbi]] – hFOXO1 DBD 151-259 + DNA &lt;br /&gt;<br /> **[[4lg0]] - hFOXO1 DBD + DNA + ETS1&lt;br /&gt;<br /> *FOXO3<br /> **[[2uzk]] – hFOXO3 DBD 158-253 + DNA&lt;br /&gt;<br /> **[[2k86]] - hFOXO3 DBD domain – NMR&lt;br /&gt;<br /> **[[2lqh]], [[2lqi]] - hFOXO3 transactivation domain 101-152 + CREB-binding protein – NMR&lt;br /&gt;<br /> *FOXO4<br /> **[[3l2c]] – hFOXO4 DBD 86-187 + DNA&lt;br /&gt;<br /> **[[1e17]] – hFOXO4 DBD - NMR&lt;br /&gt;<br /> *FOXP1<br /> **[[2kiu]] – hFOXP1 DBD 462-548 (mutant) - NMR&lt;br /&gt;<br /> *FOXP2<br /> **[[2a07]] – hFOXP2 FH domain 502-594 + DNA&lt;br /&gt;<br /> **[[2as5]] – hFOXP2 FH domain + nuclear factor of activated T-cell + DNA&lt;br /&gt;<br /> *FOXP3<br /> **[[3qrf]] – hFOXP3 DBD + nuclear factor of activated T-cell + DNA&lt;br /&gt;<br /> **[[4wk8]] – hFOXP3 DBD 336-417 + DNA &lt;br /&gt;<br /> **[[4i1l]] – mFOXP3 residues 189-276 – mouse&lt;br /&gt;<br /> **[[8sro]], [[8srp]] – mFOXP3 residues 188-423 + DNA – Cryo EM&lt;br /&gt;<br /> <br /> }}<br /> <br /> [[Category:Topic Page]]</div>

Openfox https://proteopedia.org/index.php?title=FKBP_3D_structures&diff=4433704 2026-03-29T10:39:11Z

<p>Openfox: Fix TreeAndMenu broken list structure</p> <hr /> <div>== 3D Structures of FKBP ==<br /> <br /> Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}<br /> {{#tree:id=OrganizedByTopic|openlevels=0|<br /> *FKBP<br /> **[[1fkr]], [[1fks]], [[1fkt]] – hFKBP - human - NMR&lt;br /&gt;<br /> **[[1bl4]] – hFKBP (mutant)+inhibitor&lt;br /&gt;<br /> **[[1bkf]] – hFKBP (mutant)+FK-506&lt;br /&gt;<br /> **[[1fkf]] - hFKBP+FK-506&lt;br /&gt;<br /> **[[7dki]] – FKBP - silk worm&lt;br /&gt;<br /> **[[1fks]], [[1fkr]], [[1fkt]] – EcFKBP – ''Escherichia coli''&lt;br /&gt;<br /> **[[1q6h]], [[1q6u]] – EcFKBP&lt;br /&gt;<br /> **[[1q6i]] – EcFKBP+FK-506&lt;br /&gt;<br /> **[[1ix5]] – FKBP – ''Methanothermococcus thermolithotrophicus'' – NMR&lt;br /&gt;<br /> *FKBP1B<br /> **[[4iq2]], [[4iqc]] - hFKBP-1B (mutant)&lt;br /&gt;<br /> **[[4c02]] - hFKBP-1B+ activin receptor type I&lt;br /&gt;<br /> **[[5tap]], [[6jgz]], [[6jh6]], [[6jhn]], [[6ji0]], [[6jrr]], [[6pv6]], [[6w1n]], [[6wot]], [[6wou]], [[6wov]], [[6x34]], [[7cf9]], [[7jmf]], [[7jmg]], [[7jmh]], [[7jmi]], [[7jmj]] - hFKBP-1B + ryanodine receptor type I – Cryo EM&lt;br /&gt;<br /> **[[6ji8]], [[6jii]], [[6jiu]], [[6jiy]], [[6jrs]], [[6m2w]], [[6x32]], [[6x33]], [[6x35]], [[6x36]] - hFKBP-1B + ryanodine receptor type I + calmodulin 1 – Cryo EM&lt;br /&gt;<br /> **[[8z28]], [[8z38]] - FKBP-1B – ''Pyricularia oryzae''&lt;br /&gt;<br /> *FKBP3<br /> **[[3kz7]] – hFKBP FK506-binding domain + immunosuppressant - human<br /> *FKBP8<br /> **[[2awg]], [[2f2d]], [[3ey6]] - hFKBP FK506-binding domain&lt;br /&gt;<br /> **[[2d9f]] – hFKBP – NMR&lt;br /&gt;<br /> **[[2mf9]] – hFKBP N terminal 58-206 – NMR&lt;br /&gt;<br /> *FKBP12 or PPIase FKBP1A<br /> **[[1d6o]], [[1fkk]], [[2dg3]], [[2ppn]], [[2ppp]], [[8x6p]] – hFKBP&lt;br /&gt;<br /> **[[1eym]], [[2ppo]], [[4ipx]], [[4n19]] – hFKBP (mutant) &lt;br /&gt;<br /> **[[2gaq]], [[2pnu]] – hFKBP - NMR&lt;br /&gt;<br /> **[[3uqi]] – ymFKBP – yellowfever mosquito&lt;br /&gt;<br /> **[[2lpv]] – ymFKBP - NMR&lt;br /&gt;<br /> **[[5ht1]] – CgFKBP – ''Candida glabrata'' &lt;br /&gt;<br /> **[[5htg]], [[5hw6]], [[5hw7]] – CaFKBP – ''Candida albicans'' &lt;br /&gt;<br /> **[[5i98]] – CaFKBP (mutant)&lt;br /&gt;<br /> **[[5hwb]] – NfFKBP – ''Neosartorya fumigata''&lt;br /&gt;<br /> **[[5j6e]] – NfFKBP (mutant) &lt;br /&gt;<br /> **[[6vsi]] – FKBP – ''Candida auris'' &lt;br /&gt;<br /> *FKBP12 complex<br /> **[[1fkd]], [[1fkj]], [[1qpf]], [[1qpl]], [[2fke]] – hFKBP + immunosuppressant&lt;br /&gt;<br /> **[[1j4h]], [[1j4i]], [[9lyg]] – hFKBP + inhibitor&lt;br /&gt;<br /> **[[8chi]], [[8chj]], [[8chk]], [[8chl]], [[8chm]], [[8pdf]] – hFKBP (mutant) + inhibitor&lt;br /&gt;<br /> **[[9dcw]] – hFKBP + macrocycle molecular glue&lt;br /&gt;<br /> **[[1b6c]] – hFKBP + TGF-B superfamily receptor I&lt;br /&gt;<br /> **[[3fap]] – hFKBP + FKBP12-rapamycin associated protein&lt;br /&gt;<br /> **[[4fap]] - hFKBP + FKBP12-rapamycin associated protein + immunosuppressant&lt;br /&gt;<br /> **[[1c9h]], [[1fkb]], [[2dg4]], [[4dh0]] - hFKBP+rapamycin&lt;br /&gt;<br /> **[[2dg9]], [[7u8d]] - hFKBP (mutant)+rapamycin&lt;br /&gt;<br /> **[[1fap]], [[1nsg]], [[2fap]] - hFKBP+rapamycin+FRB&lt;br /&gt;<br /> **[[1f40]] – hFKBP +GPI-1046&lt;br /&gt;<br /> **[[1a7x]] – hFKBP +FK-1012&lt;br /&gt;<br /> **[[1d7h]], [[1d7i]], [[1d7j]], [[1fkg]], [[1fkh]], [[1fki]] – hFKBP +ligand&lt;br /&gt;<br /> **[[6vcu]], [[6yf0]], [[6yf1]], [[6yf2]], [[6yf3]] – hFKBP + drug&lt;br /&gt;<br /> **[[8er6]], [[8er7]] – hFKBP + serine/threonine protein kinase 224-317 + inhibitor&lt;br /&gt;<br /> **[[6m4u]], [[8ppz]] – hFKBP + serine/threonine protein kinase MTOR peptide &lt;br /&gt;<br /> **[[2rse]] – hFKBP + serine/threonine protein kinase MTOR peptide + rapamycin - NMR&lt;br /&gt;<br /> **[[8era]] – hFKBP + serine/threonine protein kinase MTOR + LST8 – Cryo EM&lt;br /&gt;<br /> **[[6m4v]], [[6m4w]] – hFKBP + MBP + rapamycin&lt;br /&gt;<br /> **[[3h9r]], [[6i1s]], [[8pod]] – hFKBP + activin receptor type I&lt;br /&gt;<br /> **[[3mdy]] – hFKBP+ BMPR1B&lt;br /&gt;<br /> **[[1j4r]] – hFKBP + FKB-001&lt;br /&gt;<br /> **[[6oqa]] – hFKBP + CEP250&lt;br /&gt;<br /> **[[7m6a]], [[7m6l]], [[7vml]], [[7vmm]], [[7vmn]], [[7vmo]], [[7vmp]], [[7vmq]], [[7vmr]], [[7vms]], [[7u0s]], [[7u8d]], [[7u9q]], [[7u9r]], [[7u9t]], [[7u9x]], [[7u9z]], [[7ua1]], [[7ua3]], [[7ua4]], [[7ua5]], [[7ua9]] - hFKBP + ryanodine receptor type 2 – Cryo EM&lt;br /&gt;<br /> **[[1tco]] - bFKBP + Ser/Thr phosphatase B2 + immunosuppressant - bovine&lt;br /&gt;<br /> **[[1fkl]] – bFKBP +rapamycin &lt;br /&gt;<br /> **[[1yat]] – FKBP + antagonist – yeast&lt;br /&gt;<br /> **[[5hua]] – CgFKBP + FK506&lt;br /&gt;<br /> **[[5hw8]] – CaFKBP (mutant) + FK506&lt;br /&gt;<br /> **[[6tz6]] – CaFKBP + FK506 + calcineurin B + serine/threonine protein phosphatase&lt;br /&gt;<br /> **[[6vcv]] - NfFKBP + FK506 analog &lt;br /&gt;<br /> **[[5hwc]] – NfFKBP (mutant) + FK506&lt;br /&gt;<br /> **[[6tz7]] – NfFKBP + FK506 + calcineurin B + serine/threonine protein phosphatase&lt;br /&gt;<br /> **[[6tz8]] – FKBP + FK506 + calcineurin B + serine/threonine protein phosphatase – ''Cryptococcus neoformans''&lt;br /&gt;<br /> **[[6vct]], [[6vrx]] – FKBP + FK506 analog – ''Mucor circinelloides''&lt;br /&gt;<br /> *FKBP12.6<br /> **[[5hkg]] – hFKBP &lt;br /&gt;<br /> **[[7t64]], [[7t65]], [[7tzc]], [[8dty]], [[8dtz]], [[8dvv]], [[9cgp]], [[9cgq]] - rFKBP + ryanodine receptor type 1 – Cryo EM&lt;br /&gt;<br /> *FKBP13<br /> **[[2pbc]] – hFKBP &lt;br /&gt;<br /> **[[4nnr]] – hFKBP + FK506&lt;br /&gt;<br /> **[[1u79]], [[1y0o]] – AtFKBP - ''Arabidopsis thaliana''<br /> *FKBP14<br /> **[[4dip]], [[4msp]] – hFKBP &lt;br /&gt;<br /> *FKBP22<br /> **[[3b09]] – FKBP N terminal - ''Shewanella''&lt;br /&gt;<br /> *FKBP25<br /> **[[2mph]] – hFKBP &lt;br /&gt;<br /> **[[2kfv]] – hFKBP N terminal 20-92&lt;br /&gt;<br /> **[[1pbk]] – hFKBP C terminal&lt;br /&gt;<br /> **[[5d75]] – hFKBP + FK506&lt;br /&gt;<br /> **[[5gpg]] – hFKBP FK1 domain + rapamycin + MTOR &lt;br /&gt;<br /> *FKBP26<br /> **[[3pr9]], [[3pra]], [[3prb]], [[3prd]] – FKBP – ''Methanocaldococcus jannaschii''<br /> *FKBP35<br /> **[[2vn1]] – PfFKBP FK1 domain+FK506 &lt;br /&gt;<br /> **[[4j4n]] – PfFKBP FK1 domain + antimalarial drug &lt;br /&gt;<br /> *FKBP36<br /> **[[3b7x]] – hFKBP &lt;br /&gt;<br /> **[[5mgx]] – hFKBP + Hsp90 C-terminal&lt;br /&gt;<br /> *FKBP38<br /> **[[2mf9]] - hFKBP N terminal - NMR<br /> *FKBP39<br /> **[[4ca9]] - FKBP N terminal – ''Drosophila melanogaster'' – NMR&lt;br /&gt;<br /> *FKBP42<br /> **[[2f4e]] – AtFKBP N-terminal &lt;br /&gt;<br /> **[[2if4]] – AtFKBP &lt;br /&gt;<br /> *FKBP51 or PPIase FKBP5; Domains – FK1 1-140; FK2 141-260<br /> **[[1kt1]], [[5omp]] – hFKBP&lt;br /&gt;<br /> **[[1kt0]] – hFKBP (mutant)&lt;br /&gt;<br /> **[[5njx]] – hFKBP + Hsp90 peptide&lt;br /&gt;<br /> **[[7l7i]] – hFKBP + Hsp90 + P23 – Cryo EM&lt;br /&gt;<br /> **[[3o5d]] – hFKBP FK1+FK2 domains &lt;br /&gt;<br /> **[[3o5e]], [[3o5f]], [[3o5g]], [[3o5i]], [[3o5j]], [[3o5k]] - hFKBP FK1 domain&lt;br /&gt;<br /> **[[3o5l]], [[3o5m]], [[3o5o]], [[3o5p]], [[3o5q]], [[4r0x]] - hFKBP FK1 domain (mutant)&lt;br /&gt;<br /> **[[4lax]] – hFKBP FK1+FK2 domains + FK506&lt;br /&gt;<br /> **[[4lay]] – hFKBP FK1+FK2 domains + I63&lt;br /&gt;<br /> **[[3o5r]] - hFKBP FK1 domain (mutant) + immunosuppressant&lt;br /&gt;<br /> **[[4drq]], [[5obk]], [[7a6w]], [[7a6x]], [[7aot]], [[7aou]], [[7apq]], [[7aps]], [[7apt]], [[7apw]], [[7awf]], [[7awx]], [[7b9y]], [[7b9z]], [[7ba0]], [[8chn]], [[8chp]], [[8chq]], [[8chr]], [[9eu6]], [[9eu7]], [[9eu8]] [[9eu9]], [[9eua]], [[9eub]], [[9euc]], [[9eud]], [[9eue]], [[9ey3]], [[9ey4]] – hFKBP FK1 domain + inhibitor&lt;br /&gt;<br /> **[[4jfi]], [[4jfj]], [[4jfk]], [[4jfl]], [[4jfm]], [[4tw6]], [[4tw7]], [[4tx0]], [[4w9o]], [[4w9p]], [[4w9q]], [[5dit]], [[5diu]], [[5div]], [[7r0l]], [[8ba6]], [[8baj]], [[8cca]], [[8ccb]], [[8ccd]], [[8cce]], [[8ccf]], [[8ccg]], [[8cch]], [[8pj8]], [[8pja]], [[8r5k]] – hFKBP FK1 domain (mutant) + inhibitor&lt;br /&gt;<br /> **[[9gpk]], [[9gpl]], [[9gpm]], [[9gpn]], [[9gpo]], [[9gpp]], [[9gpq]], [[9gpr]], [[9gps]], [[9gpt]], [[9gpu]], [[9gpv]], [[9gpw]], [[9gpx]], [[9gpy]], [[9gpz]], [[9gq2]], [[9gq3]], [[9gq4]], [[9gq5]], [[9gq6]], [[9gq7]], [[9gq8]], [[9gq9]], [[9gqa]], [[9gqb]], [[9gqc]], [[9gqd]], [[9gqe]], [[9gqf]], [[9gqg]], [[9gqh]], [[9gqi]], [[9gqj]], [[9gqk]] – hFKBP FK1 domain (mutant) + macrocyclic inhibitor&lt;br /&gt;<br /> **[[4drk]], [[4drm]], [[4drn]], [[4dro]], [[4drp]] – hFKBP FK1 domain + FK506 analog&lt;br /&gt;<br /> **[[7ett]], [[7etu]], [[7etv]] – hFKBP FK1 domain (mutant) + peptide inhibitor&lt;br /&gt;<br /> **[[5bxj]] – hFKBP FK1 domain (mutant) + nitrophenol&lt;br /&gt;<br /> **[[4tw8]] – hFKBP FK1+FK2 domains (mutant) + inhibitor&lt;br /&gt;<br /> **[[4drk]], [[4drm]], [[4drn]], [[4dro]], [[4drp]] – hFKBP FK1 domain + FK506 analog&lt;br /&gt;<br /> **[[8era]] – hFKBP FK1 domain + serine/threonine protein kinase MTOR + TORC + raptor – Cryo EM &lt;br /&gt;<br /> **[[4drh]], [[4dri]] – hFKBP FK1 domain + serine/threonine protein kinase MTOR peptide + rapamycin &lt;br /&gt;<br /> **[[6tx4]] – hFKBP FK1 domain + pyridone&lt;br /&gt;<br /> **[[6tx6]] – hFKBP FK1 domain + nicotinamide&lt;br /&gt;<br /> **[[6tx5]], [[6tx8]] – hFKBP FK1 domain (mutant) + imidazole derivative&lt;br /&gt;<br /> **[[6tx7]] – hFKBP FK1 domain (mutant) + piperidone derivative&lt;br /&gt;<br /> **[[6tx9]] – hFKBP FK1 domain (mutant) + hydantoin derivative&lt;br /&gt;<br /> **[[6saf]], [[6txx]] – hFKBP FK1 domain (mutant) + ligand&lt;br /&gt;<br /> **[[8pc2]] – hFKBP FK1 domain (mutant) + seldeg51 + pvhl + elongin B + elongin C&lt;br /&gt;<br /> **[[8ffw]] – hFKBP + Hsp90 peptide + glucocorticoid receptor – Cryo EM<br /> *FKBP52 or PPIase FKBP4<br /> **[[8ffv]] – hFKBP + Hsp90 peptide + glucocorticoid receptor – Cryo EM<br /> **[[4lav]], [[4law]] – hFKBP FK1+FK2 domains 16-260&lt;br /&gt;<br /> **[[1n1a]], [[1q1c]] – hFKBP N terminal 1-140&lt;br /&gt;<br /> **[[1p5q]] - hFKBP C terminal 144-458&lt;br /&gt;<br /> **[[4drj]] – hFKBP FK1 domain + serine/threonine protein kinase MTOR peptide + rapamycin &lt;br /&gt;<br /> **[[6rcy]] – hFKBP FK1 domain + ligand&lt;br /&gt;<br /> **[[1qz2]] – hFKBP C-terminal + Hsp90 peptide&lt;br /&gt;<br /> *FKBP53<br /> **[[8zaj]] – AtFKBP nucleoplasmin domain 1-100 – Cryo EM<br /> *FKBP59<br /> **[[1rot]], [[1rou]] – FKBP N terminal – NMR – rabbit<br /> **[[2lgo]] – FKBP – NMR –'' Giardia lamblia''<br /> *FKBP73<br /> **[[3jxv]], [[3jym]] - FKBP - wheat<br /> *SlyD<br /> * See [[Peptidyl-prolyl cis-trans isomerase]]<br /> }}<br /> [[Category: Topic Page]]</div>

Openfox https://proteopedia.org/index.php?title=Fatty_acid_synthase_3D_structures&diff=4433703 2026-03-29T10:39:10Z

<p>Openfox: Fix TreeAndMenu broken list structure</p> <hr /> <div>== 3D structures of fatty acid synthase==<br /> <br /> Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}<br /> {{#tree:id=OrganizedByTopic|openlevels=0|<br /> *Fatty acid synthase; Domains – KS-MAT 2-963; MAT 422-823; dehydratase 858-1102; core modifying 855-2511;enoyl-ACP-reductase 1529-1867; ACP 2114-2202; thioesterase 2221-2502<br /> **[[9b7z]], [[9b80]] – hFAS 1-854 – human – Cryo EM&lt;br /&gt;<br /> **[[8eyi]], [[8eyk]] – hFAS 854-2511 – Cryo EM&lt;br /&gt;<br /> **[[1xkt]], [[4z49]] – hFAS thioesterase domain &lt;br /&gt;<br /> **[[8g7x]], [[8zev]] – hFAS dehydratase domain<br /> **[[2jfd]] – hFAS MAT domain&lt;br /&gt;<br /> **[[3hhd]] - hFAS KS-MAT domain&lt;br /&gt;<br /> **[[4w82]] – hFAS enoyl- ACP-reductase domain&lt;br /&gt;<br /> **[[2cf2]], [[2vz8]] – pFAS – pig&lt;br /&gt;<br /> **[[2png]] – FAS ACP domain – rat&lt;br /&gt;<br /> **[[5my2]] – FAS KS-MAT DI domain – mouse&lt;br /&gt;<br /> **[[6fn6]] – FAS – ''Drosophila melanogaster''&lt;br /&gt;<br /> **[[2uv8]], [[3hmj]], [[6ql9]] – yFAS α+β subunits + FMN - yeast&lt;br /&gt;<br /> **[[6jsh]], [[6jsi]], [[6ql5]], [[6ql6]], [[6ta1]], [[6u5t]], [[6u5u]], [[6wc7]], [[8prw]], [[8psm]] - yFAS α+β subunits + FMN – Cryo EM&lt;br /&gt;<br /> **[[2pff]], [[2was]], [[2ml8]] – yFAS α subunit&lt;br /&gt;<br /> **[[1kp9]] – MtFAS CmaA1 – ''Mycobacterium tuberculosis''&lt;br /&gt;<br /> **[[4v8w]], [[6gjc]] – MtFAS I – Cryo-EM&lt;br /&gt;<br /> **[[4v8l]] – FAS – ''Mycobacterium smegmatis'' – Cryo-EM&lt;br /&gt;<br /> **[[4v58]] – TlFAS – ''Thermomyces lanuginosus''&lt;br /&gt;<br /> **[[6u5v]], [[6u5w]], [[7tui]] - CaFAS α+β subunits + FMN – ''Candida albicans'' - Cryo EM&lt;br /&gt;<br /> **[[7bc4]] - PpFAS α+β subunits – ''Pischia pastoris'' - Cryo EM&lt;br /&gt;<br /> **[[7bc5]] - PpFAS α subunit ACP domain - Cryo EM&lt;br /&gt;<br /> **[[7q5s]] - FAS – ''Chaetonium thermophilum'' - Cryo EM&lt;br /&gt;<br /> *FAS complex with fatty acid<br /> **[[9mj9]] – hFAS 1-854 + Ser-ACP – Cryo EM<br /> **[[3tjm]] – hFAS thioesterase domain + fatty acid&lt;br /&gt;<br /> **[[8pcg]], [[8prv]], [[8ps1]], [[8ps2]], [[8ps8]], [[8ps9]], [[8psa]], [[8psf]], [[8psj]], [[8psk]], [[8psl]], [[8psp]] - yFAS thioesterase domain + ACP – Cryo EM<br /> **[[1kpg]] – MtFAS CmaA1 + cetyl-trimethyl-ammonium + adenosyl homocysteine&lt;br /&gt;<br /> **[[1kph]] – MtFAS CmaA1 + didecyl-dimethyl-ammonium + adenosyl homocysteine&lt;br /&gt;<br /> **[[1kpi]] – MtFAS CmaA2 + didecyl-dimethyl-ammonium + adenosyl homocysteine&lt;br /&gt;<br /> **[[3hem]] - MtFAS CmaA1 + dioctylamine&lt;br /&gt;<br /> *FAS complex with reactants<br /> **[[8vle]], [[8vlp]], [[8vm0]], [[8vm5]], [[8vm6]], [[8vm7]], [[8vmc]], [[8vmd]] - hFAS + NADP – Cryo EM<br /> **[[8vf7]], [[8vg4]] - hFAS + NADP + Ser-ACP – Cryo EM<br /> **[[2jfk]] – hFAS MAT domain + malonyl CoA&lt;br /&gt;<br /> **[[2vz9]] – pFAS + NADP&lt;BR /&gt;<br /> **[[5my0]] - mFAS KS-MAT domain + malonyl CoA&lt;br /&gt;<br /> **[[6rop]] - mFAS KS-MAT domain + octanoyl CoA&lt;br /&gt;<br /> **[[2wat]] – yFAS α subunit + CoA&lt;br /&gt;<br /> **[[4v59]] – TlFAS + NADP&lt;BR /&gt;<br /> *FAS complex with protein<br /> **[[2cg5]] - hFAS ACP domain + AASD-PPT&lt;br /&gt;<br /> **[[6ql7]] – yFAS α+β subunits + translation machinery-associated protein 17&lt;br /&gt;<br /> *FAS complex with inhibitor<br /> **[[7mhd]], [[7mhe]] – hFAS thioesterase domain + inhibitor&lt;br /&gt;<br /> **[[2px6]] – hFAS thioesterase domain + orlistat&lt;br /&gt;<br /> **[[4piv]], [[5c37]], [[6nna]] – hFAS (mutant) + NADP + inhibitor&lt;br /&gt;<br /> **[[2vkz]] - yFAS α+β subunits + cerulenin&lt;br /&gt;<br /> **[[8gkc]] – hFAS core modifying domain + drug – Cryo EM&lt;br /&gt;<br /> * For FAS acyl carrier protein see [[Acyl carrier protein]]<br /> }}<br /> <br /> [[Category:Topic Page]]</div>

Openfox https://proteopedia.org/index.php?title=Dual_specificity_protein_kinase_3D_structures&diff=4433702 2026-03-29T10:39:08Z

<p>Openfox: Fix TreeAndMenu broken list structure</p> <hr /> <div>==3D structures of dual specificity protein kinase==<br /> <br /> Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}<br /> {{#tree:id=OrganizedByTopic|openlevels=0|<br /> *CLK1 kinase domain<br /> **[[1z57]] – hCLK1 + himenialdizine – human<br /> **[[2vag]], [[5j1v]], [[5j1w]], [[5x8i]], [[6ft8]], [[6ft9]], [[6fyo]], [[6i5h]], [[6i5i]], [[6i5k]], [[6i5l]], [[6khd]], [[6q8k]], [[6q8p]], [[6qty]], [[6r3d]], [[6r6e]], [[6r6x]], [[6r8j]], [[6raa]], [[6tw2]], [[6yta]], [[6yte]], [[6ytg]], [[6yti]], [[6z4z]], [[6z50]], [[6zln]], [[7ak3]], [[7o9y]], [[7oa0]], [[7opg]], [[8uwn]] – hCLK1 + inhibitor&lt;br /&gt;<br /> **[[6ytd]] – hCLK1 (mutant) + inhibitor&lt;br /&gt;<br /> **[[6g33]] – hCLK1 + iodotubercidine inhibitor&lt;br /&gt;<br /> **[[8p08]] – hCLK1 + drug&lt;br /&gt;<br /> *CLK2 kinase domain<br /> **[[3nr9]] – hCLK2&lt;br /&gt;<br /> **[[5unp]], [[6fyl]], [[6fyk]], [[6fyi]], [[6khe]] – hCLK2 + inhibitor&lt;br /&gt;<br /> *CLK3<br /> **[[2eu9]] – hCLK3<br /> **[[2exe]] – hCLK3 kinase domain, phosphorylated<br /> **[[2wu6]], [[2wu7]], [[6ft7]], [[6fyp]], [[6fyr]], [[6rct]], [[6khf]], [[6ytw]], [[6yu1]], [[6z51]], [[6z52]], [[6z53]], [[6z54]], [[6z55]], [[9ez3]] – hCLK3 kinase domain + inhibitor<br /> **[[6yty]], [[6z2v]] – hCLK3 (mutant) + inhibitor&lt;br /&gt;<br /> **[[3raw]] - hCLK3 kinase domain + leucettine<br /> *CLK4 kinase domain&lt;br&gt; <br /> **[[6fyv]] – hCLK4 + inhibitor&lt;br /&gt;<br /> *TTK; Domains: TPR 55-210, kinase 400-808 <br /> **[[3cek]], [[3dbq]], [[2zmc]], [[6gvj]] – hTTK kinase domain&lt;br /&gt;<br /> **[[4b94]], [[4h7x]], [[4h7y]] - hTTK TPR domain&lt;br /&gt;<br /> **[[3gfw]] - hTTK kinase domain + pyrolo-pyridin ligand<br /> **[[3h9f]] - hTTK kinase domain + pyrimidino-diazepin ligand<br /> **[[2x9e]], [[3vqu]], [[3w1f]], [[3wyx]], [[3wyy]], [[3wzj]], [[3wzk]], [[4bhz]], [[4bi0]], [[4bi1]], [[4bi2]], [[4c4e]], [[4c4f]], [[4c4g]], [[4c4h]], [[4c4i]], [[4c4j]], [[4cv8]], [[4cv9]], [[4cva]], [[4d2s]], [[4js8]], [[4jt3]], [[4o6l]], [[4zeg]], [[5ap0]], [[5ap1]], [[5ap2]], [[5eh0]], [[5ehl]], [[5eho]], [[5ehy]], [[5ei2]], [[5ei6]], [[5ei8]], [[5n9s]], [[5n7v]], [[5n84]], [[5n87]], [[5n93]], [[5na0]], [[6b4w]], [[6h3k]], [[6n6o]], [[6tn9]], [[6tnb]], [[6tnc]], [[6tnd]], [[7chm]], [[7chn]], [[7cht]], [[7cil]], [[7cja]], [[7clh]], [[7lqd]] - hTTK kinase domain + inhibitor<br /> **[[2zmd]], [[5ap3]], [[5ap4]], [[5ap5]], [[5ap6]], [[5ap7]], [[5o91]], [[5ntt]], [[5nad]], [[5mrb]] - hTTK kinase domain (mutant) + inhibitor&lt;br /&gt;<br /> **[[3hmn]] - hTTK kinase domain + ATP<br /> **[[3hmo]] - hTTK kinase domain + staurosporine<br /> **[[3hmp]] - hTTK kinase domain + quinazoline ligand&lt;br /&gt;<br /> **[[5ljj]] - hTTK kinase domain + reversine&lt;br /&gt;<br /> }}<br /> <br /> [[Category:Topic Page]]</div>

Openfox https://proteopedia.org/index.php?title=Concanavalin_3D_structures&diff=4433701 2026-03-29T10:39:04Z

<p>Openfox: Fix TreeAndMenu broken list structure</p> <hr /> <div>== 3D Structures of Concanavalin A ==<br /> <br /> Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}<br /> {{#tree:id=OrganizedByTopic|openlevels=0|<br /> *Concanavalin A binary complex with metal<br /> **[[1dq6]], [[1gkb]], [[1jbc]], [[1nls]], [[1nxd]], [[1qgl]], [[1qny]], [[1vln]], [[2cna]], [[3cna]], [[3nwk]], [[5o6n]], [[6h2m]], [[7mg1]], [[7mg2]], [[7mg3]], [[7mg4]], [[9j1a]] – CeConA + Mn – ''Canavalia ensiformis'' &lt;br /&gt;<br /> **[[5ygm]] – CeConA (mutant) + Mn&lt;br /&gt;<br /> **[[1c57]], [[1xqn]], [[2yz4]] – CeConA + Mn – neutron<br /> **[[2ctv]] – CeConA + Mn – Laue<br /> **[[9b34]] – CeConA + Zn – Cryo EM&lt;br /&gt;<br /> **[[1ces]], [[1enq]], [[1enr]], [[3enr]] – CeConA + Zn &lt;br /&gt;<br /> **[[1scr]], [[2uu8]] – CeConA + Ni &lt;br /&gt;<br /> **[[1ens]], [[1scs]], [[8i7q]] – CeConA + Co &lt;br /&gt;<br /> **[[1con]], [[2enr]], [[6ahg]] – CeConA + Cd &lt;br /&gt;<br /> **[[6xt6]] – Cepro-ConA + Zn + Mn&lt;br /&gt;<br /> **[[2a7a]], [[2g4i]] – CvConA + Mn + Xe – ''Canavalia virosa''<br /> **[[2g4i]] – CvConA + Mn<br /> **[[1wuv]] – CgConA + Mn – ''Canavalia gladiata''<br /> **[[5byn]] – ClConA + Mn + Cd – ''Canavalia lineata''&lt;br /&gt;<br /> * Concanavalin A other complex<br /> **[[1hqw]], [[1jyc]], [[1jyi]], [[1jui]], [[1joj]], [[1jw6]] – CeConA + polypeptide + Mn<br /> **[[1jn2]] – CeConA + porphyrin derivative + Mn<br /> **[[1cjp]], [[1gic]], [[1ona]], [[1val]], [[1vam]], [[4p9w]], [[4p9x]], [[4p9y]], [[4pf5]], **[[5cna]] – CeConA + pyranoside derivative + Mn<br /> **[[1bxh]], [[1cvn]], 1i3h, 1qdc, 1qdo, 1tei – CeConA + glucoside + Mn<br /> **[[3d4k]], [[5wey]], [[5z5l]], [[5z5n]], [[5z5p]], [[5z5y]], [[5zac]], [[7mgb]], [[7mgc]], [[7mgd]], [[8wmg]], [[8wmk]], [[9j1b]], [[9j1c]], [[9j1d]], [[9j1f]] – CeConA + mannose derivative + Mn&lt;br /&gt;<br /> **[[7mg5]], [[7mg6]], [[7mg7]], [[7mg8]], [[7mg9]], [[7mga]] - CeConA + DNA + Mannose derivative + Mn&lt;br /&gt;<br /> **[[9b36]] – CeConA + kainate receptor + mannose + Zn – Cryo EM&lt;br /&gt;<br /> **[[2d7f]], [[2ef6]], [[2ovu]], [[2p2k]] - CgConA + mannoside + Mn<br /> **[[3qlq]] - CcConA + glucosyl-octasilsesquioxane + Mn – ''Canavalia cathartica''<br /> **[[4czs]] – CcConA + mannose peptide + Mn&lt;br /&gt;<br /> **[[5f5q]] – CcConA + mannoside + Mn&lt;br /&gt;<br /> **[[3snm]] - ClConA + indole-acetate + Mn<br /> **[[4i30]], [[4tys]] – ClConA + nucleotide + Mn<br /> **[[4tzd]] – ClConA + DNA&lt;br /&gt;<br /> **[[4dpn]] – ClConA + resveratrol + Mn&lt;br /&gt;<br /> *Concanavalin metal-free<br /> **[[1apn]], [[1cn1]], [[1dq0]], [[1dq2]] – CeConA<br /> *Concanavalin B<br /> **[[6gwa]] – CeConB – electron laser&lt;br /&gt;<br /> **[[1cnv]], [[6caf]] – CeConB&lt;br /&gt;<br /> *Concanavalin BR<br /> **[[6vb8]] – CbConBR + indole acetate + Mn – ''Canavalia brasiliensis'' &lt;br /&gt;<br /> **[[1dq1]] – CeConBR + Ca &lt;br /&gt;<br /> **[[1dq4]], [[1dq5]] – CeConBR + Mn &lt;br /&gt;<br /> **[[1azd]], [[3ju9]] – BrConBR + Mn<br /> **[[4p14]] – CbConBR + adenine + Mn &lt;br /&gt;<br /> **[[4pcr]] – CbConBR + GABA + Mn&lt;br /&gt;<br /> **[[4h55]] - CbConBR + glucoside + Mn<br /> *Concanavalin M<br /> **[[2cy6]], [[2cyf]] – CmConM + glucose + Mn – ''Canavalia maritima''<br /> **[[2ow4]], [[2p34]], [[2p37]] – CmConM + mannose + Mn<br /> *Concanavalin V<br /> **[[6gw9]] – CcConV + Mg – electron laser&lt;br /&gt;<br /> **[[9b33]] – CeConV + Zn – Cryo EM&lt;br /&gt;<br /> <br /> <br /> }}<br /> <br /> [[Category:Topic Page]]</div>

Openfox https://proteopedia.org/index.php?title=Clp_Protease_3D_structures&diff=4433700 2026-03-29T10:39:03Z

<p>Openfox: Fix TreeAndMenu broken list structure</p> <hr /> <div>==3D structures of Clp protease==<br /> <br /> Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}<br /> {{#tree:id=OrganizedByTopic|openlevels=0|<br /> *Clp P subunit or ATP-dependent Clp protease proteolytic subunit<br /> **[[1tg6]], [[8w7c]] - hClpP – human&lt;br /&gt;<br /> **[[1tyf]], [[1yg6]] – EcClpP – ''Escherichia coli''&lt;br /&gt;<br /> **[[1yg8]], [[3hln]] - EcClpP (mutant) &lt;br /&gt;<br /> **[[1y7o]] – SpClpP – ''Streptococcus pneumonia''&lt;br /&gt;<br /> **[[2f6i]], [[4gm2]], [[4hnk]] – ClpP – ''Plasmodium falciparum''&lt;br /&gt;<br /> **[[2cby]], [[2ce3]], [[2c8t]], [[4u0h]], [[5e0s]], [[5dzk]] – MtClpP1 + ClpP2 – ''Mycobacterium tuberculosis''&lt;br /&gt;<br /> **[[6vgk]] – MtClpP1 + ClpP2 – Cryo EM&lt;br /&gt;<br /> **[[6mx2]] – CdClpP1 - ''Clostridium difficile'' &lt;br /&gt;<br /> **[[3ktg]], [[3kth]], [[3tt6]] – BsClpP – ''Bacillus subtilis''&lt;br /&gt;<br /> **[[7feq]], [[7fes]] - BsClpP – Cryo EM&lt;br /&gt;<br /> **[[3q7h]] - ClpP – ''Coxiella burnetii''&lt;br /&gt;<br /> **[[3qwd]], [[3st9]], [[3sta]], [[3v5e]], [[4emm]], [[4mxi]], [[6tty]] - SaClpP – ''Staphylococcus aureus''&lt;br /&gt;<br /> **[[3v5i]], [[4emp]], [[5c90]], [[6dkf]] - SaClpP (mutant) &lt;br /&gt;<br /> **[[8cj4]] - SeClpP – ''Staphylococcus epidermidis''&lt;br /&gt;<br /> **[[2zl0]] - HpClpP – ''Helicobacter pylori''&lt;br /&gt;<br /> **[[2zl3]] - HpClpP (mutant) &lt;br /&gt;<br /> **[[4jcq]], [[4jct]], [[4ryf]] – LmClp – ''Listeria monocytogenes''&lt;br /&gt;<br /> **[[6sfx]] - LmClpP – Cryo EM&lt;br /&gt;<br /> **[[4jcr]] - LmCLP (mutant)&lt;br /&gt;<br /> **[[5g1s]], [[5g1r]], [[5g1q]], [[3p2l]] - ClpP – ''Francisella tularensis''&lt;br /&gt;<br /> **[[6naq]] – NmClpP – ''Neisseria meningitidis''&lt;br /&gt;<br /> **[[7kr2]] - NmClpP – Cryo EM&lt;br /&gt;<br /> **[[6naw]], [[6nay]] - NmCLP (mutant)&lt;br /&gt;<br /> **[[6pbu]] – MsClpP – ''Mycobacterium smegmatis'' &lt;br /&gt;<br /> **[[7m1l]], [[7m1m]] – PaClpP – ''Pseudomonas aeruginosa'' &lt;br /&gt;<br /> **[[6x60]] – ClpP2 – ''Chlamydia trachomatis'' &lt;br /&gt;<br /> **[[7dft]] – XoClpP – ''Xanthomonas oryzae''&lt;br /&gt;<br /> **[[8xn4]] – ShClpP (mutant) – ''Streptomyces hawaiiensis'' – Cryo EM&lt;br /&gt;<br /> *Clp P subunit binary complex<br /> **[[6h23]] - hClpP (mutant) + carboxamide derivative&lt;br /&gt;<br /> **[[6dl7]], [[6nb1]], [[7uvm]], [[7uvn]], [[7uvr]], [[7uvu]], [[7vp9]], [[7wh5]], [[8i7x]], [[8wuz]], [[8ylb]] - hClpP + pyrimidine derivative&lt;br /&gt;<br /> **[[7uw0]], [[8hgk]] – hClpP + inhibitor&lt;br /&gt;<br /> **[[6bba]] - hClpP + ADEP-28&lt;br /&gt;<br /> **[[8w7e]] – hClpP + activator&lt;br /&gt;<br /> **[[2fzs]], [[3mt6]] - EcClpP + ADEP-1&lt;br /&gt;<br /> **[[7mk5]], [[8szm]] – EcClpP + inhibitor&lt;br /&gt;<br /> **[[6hwm]] – EcClpP + drug &lt;br /&gt;<br /> **[[8qyf]] – SeClpP + drug &lt;br /&gt;<br /> **[[2zl2]] - HpClpP + peptide&lt;br /&gt;<br /> **[[2zl4]] - HpClpP (mutant) + peptide&lt;br /&gt;<br /> **[[3kti]], [[3ktj]], [[3ktk]] - BsClpP + ADEP-1&lt;br /&gt;<br /> **[[3tt7]] - BsClpP + DFP&lt;br /&gt;<br /> **[[6iw7]] – MtClpP1 + ClpP2 + drug &lt;br /&gt;<br /> **[[7x8x]] – MtClpP1 + ClpP2 + inhibitor &lt;br /&gt;<br /> **[[6vgn]] – MtClpP1 + ClpP2 + ADEP &lt;br /&gt;<br /> **[[6vgq]] – MtClpP1 + ClpP2 + peptide – Cryo EM&lt;br /&gt;<br /> **[[5dl1]], [[6l3x]], [[6l40]], [[6n80]], [[8e71]], [[8e7p]], [[8oll]], [[8r03]], [[8r04]], [[9irm]], [[9irp]] – SaClpP + inhibitor&lt;br /&gt;<br /> **[[8ef8]] – SaClpP (mutant) + inhibitor&lt;br /&gt;<br /> **[[5w18]], [[5vz2]], [[6pka]], [[6pmd]] – SaClpP + peptide&lt;br /&gt;<br /> **[[7wgs]], [[7wid]], [[7xbz]] – SaClpP + activator&lt;br /&gt;<br /> **[[6ttz]] – SaClpP + ADEP-4&lt;br /&gt;<br /> **[[5dkp]] – NmClpP + ADEP &lt;br /&gt;<br /> **[[6nah]] - NmClpP + ADEP-14&lt;br /&gt;<br /> **[[6w9t]], [[8szn]] – NmClpP + inhibitor&lt;br /&gt;<br /> **[[8dla]] – CtClpP2 + inhibitor&lt;br /&gt;<br /> **[[8r05]] – ClpP + inhibitor – ''Photorhabdus laumondii''&lt;br /&gt;<br /> **[[7fep]], [[7fer]] – BsClpP + ADEP1 – Cryo EM &lt;br /&gt;<br /> **[[7p80]], [[7p81]] – BsClpP + ADEP2&lt;br /&gt;<br /> **[[6vxf]] - NmClpP + ClpX + ADP + ATP – Cryo EM&lt;br /&gt;<br /> **[[6cfd]] – ClpP + ADEP-4 – ''Enterococcus faecium''&lt;br /&gt;<br /> **[[7dfu]] – XoClpP + ADEP-4 &lt;br /&gt;<br /> **[[6hwn]] – ClpP + tripeptide – ''Thermus thermophilus''&lt;br /&gt;<br /> **[[8xop]] – ShClpP (mutant) + ADEP-1 – Cryo EM&lt;br /&gt;<br /> *Clp P subunit higher complexes<br /> **[[4u0g]] – MtClpP1 + ClpP2 + ADEP + agonist&lt;br /&gt;<br /> **[[6emw]] – SaClpP in MECA complex – Cryo EM &lt;br /&gt;<br /> **[[8xon]], [[8xoo]] – ShClpP (mutant) + casein + ketoreductase – Cryo EM&lt;br /&gt;<br /> **[[7eko]], [[7ekq]] – ClpP in chloroplast complex – ''Chlamydomonas reinhardtii'' – Cryo EM &lt;br /&gt;<br /> *Clp C<br /> **[[8xqu]] – hClpC1 N terminal &lt;br /&gt;<br /> **[[5gui]] – AtClpC1 N terminal – ''Arabidopsis thaliana'' &lt;br /&gt;<br /> **[[3fes]] - CdClpC &lt;br /&gt;<br /> **[[6pbq]], [[8b9u]] - MtClp N-terminal domain&lt;br /&gt;<br /> **[[8a8u]], [[8a8v]], [[8a8w]] - MtClp + antibiotic + ADP&lt;br /&gt;<br /> **[[6cn8]], [[6pbs]] - MtClp N-terminal domain 1-145 + antibiotics&lt;br /&gt;<br /> **[[8otk]] - BsClp N-terminal domain (mutant)&lt;br /&gt;<br /> **[[8b3s]] - BsClp N-terminal domain + YJBA&lt;br /&gt;<br /> **[[6em8]], [[6em9]] - SaClp – Cryo EM&lt;br /&gt;<br /> **[[8p66]] - PaClpC - NMR&lt;br /&gt;<br /> *Clp S or ATP-dependent Clp protease adapter protein ClpS<br /> **[[7d34]] – AtClpS1 + dipeptide&lt;br /&gt;<br /> **[[9ayn]], [[9ayp]], [[9az5]] - MsClp &lt;br /&gt;<br /> **[[9b06]] - MsClp + Thr&lt;br /&gt;<br /> **[[9ayo]], [[9b10]], [[9b1p]] - MsClp + dipeptide&lt;br /&gt;<br /> *Clp X or ATP-dependent Clp protease ATP-binding subunit ClpXP<br /> **[[6pba]] - MtClp N-terminal domain&lt;br /&gt;<br /> **[[3hte]], [[4i34]], [[4i5o]], [[4i63]], [[4i9k]] - EcClp &lt;br /&gt;<br /> **[[3hws]], [[4i4l]] - EcClp + ADP&lt;br /&gt;<br /> **[[4i81]] - EcClp + ATPgS &lt;br /&gt;<br /> **[[6pp5]] - EcClp + ADP – Cryo EM&lt;br /&gt;<br /> **[[6pp6]], [[6pp7]], [[6pp8]] - EcClp + ADP + ATPgS – Cryo EM&lt;br /&gt;<br /> **[[9c87]], [[9c88]] - EcClp + DHFR + ADP + ATP – Cryo EM&lt;br /&gt;<br /> **[[8v9r]] - EcClp + DHFR + ADP + ATP + methotrexate – Cryo EM&lt;br /&gt;<br /> **[[6sfw]] - LmClp - Cryo EM&lt;br /&gt;<br /> **[[6lsy]] - SpClp - Cryo EM&lt;br /&gt;<br /> **[[6lt4]] - SpClp + ATPgS – Cryo EM&lt;br /&gt;<br /> *ClpP+ClpX<br /> **[[6ppe]], [[6wr2]], [[8e7v]] – EcClpP + ClpX – Cryo EM&lt;br /&gt;<br /> **[[6po1]], [[6wsg]] – EcClpP + ClpX + ATP-gS – Cryo EM&lt;br /&gt;<br /> **[[8e91]] – EcClpP + ClpX + ADP + ATP-gS – Cryo EM&lt;br /&gt;<br /> **[[8e8q]] – EcClpP + ClpX (mutant) + ADP + ATP – Cryo EM&lt;br /&gt;<br /> **[[6po3]], [[6pod]], [[6pos]] – EcClpP + ClpX + peptide + ADP + ATP-gS – Cryo EM&lt;br /&gt;<br /> **[[6wrf]] – EcClpP + ClpX + GFP + ADP + ATP-gS – Cryo EM&lt;br /&gt;<br /> **[[8et3]] – EcClpP + ClpX + GFP + SSPB + ADP + ATP-gS – Cryo EM&lt;br /&gt;<br /> **[[6vfs]], [[6vfx]] – NmClpP + ClpX + peptide + ADP + ATP – Cryo EM&lt;br /&gt;<br /> **[[6vxf]] - NmClpP + ClpX + ADP + ATP – Cryo EM&lt;br /&gt;<br /> *ClpP+ClpA<br /> **[[6uqe]], [[6uqo]], [[6w1z]], [[6w20]], [[6w21]], [[6w23]] – EcClpP + ClpA + RepA + ADP + ATP – Cryo EM&lt;br /&gt;<br /> *ClpP+ClpA+ClpS<br /> **[[7uiv]], [[7uiw]], [[7uix]], [[7uiy]], [[7uiz]], [[7uj0]] – EcClpP + ClpA + ClpS + ADP + ATP-gS – Cryo EM&lt;br /&gt;<br /> * For Clp A subunit and Clp N see [[Heat Shock Proteins]] Hsp100<br /> <br /> }}<br /> <br /> <br /> [[Category:Topic Page]]</div>

Openfox https://proteopedia.org/index.php?title=Carboxypeptidase_3D_structures&diff=4433699 2026-03-29T10:39:02Z

<p>Openfox: Fix TreeAndMenu broken list structure</p> <hr /> <div>== 3D Structures of Carboxypeptidase ==<br /> <br /> Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}<br /> {{#tree:id=OrganizedByTopic|openlevels=0|<br /> *'''Carboxypeptidase A'''<br /> **[[2v77]] – hCPA1 – human&lt;br /&gt;<br /> **[[5cpa]], [[1yme]], [[1cps]], [[1ee3]], [[1cpx]], [[1m4l]] – bCPA – bovine&lt;br /&gt;<br /> **[[1arl]] – bCPA &lt;br /&gt;<br /> **[[1arm]], [[1eel]], [[1ell]], [[1elm]] – bCPA Zn-substituted&lt;br /&gt;<br /> **[[1k9x]] – PfCPA apo – ''Pyrococcus furiosus''&lt;br /&gt;<br /> **[[1ka2]], [[1ka4]] - PfCPA Zn-substituted&lt;br /&gt;<br /> **[[5wvu]], [[3hoa]] – CPA – ''Thermus thermophilus''&lt;br /&gt;<br /> **[[3dwc]] – CPA – ''Trypanosoma cruzi''&lt;br /&gt;<br /> **[[3g23]] – CPA – ''Novosphingobium aromaticivorans''&lt;br /&gt;<br /> **[[4ox5]] – SpCPA – ''Stretomyces pneumoniae''&lt;br /&gt;<br /> **[[5e3x]] – CPA – ''Fervidobacterium islandicum''&lt;br /&gt;<br /> **[[5giv]] – CPA – ''Deinococcus radiodurans''&lt;br /&gt;<br /> *''CPA complex with small molecules''<br /> **[[2pcu]] – hCPA4 + peptide &lt;br /&gt;<br /> **[[4uee]], [[6i6z]], [[4uez]] – hCPA1 + peptide inhibitor&lt;br /&gt;<br /> **[[5om9]] – hCPA1 + inhibitor&lt;br /&gt;<br /> **[[3cpa]] – bCPA + glycyl-tyrosine &lt;br /&gt;<br /> **[[1f57]] – bCPA + cysteine&lt;br /&gt;<br /> **[[1hdq]], [[1hdu]], [[1hee]] – bCPA + phenylalanine derivative&lt;br /&gt;<br /> **[[6cpa]], [[7cpa]], [[8cpa]] – bCPA + phosphate derivative&lt;br /&gt;<br /> **[[2scp]], [[1cbx]], [[1bav]], [[1iy7]], [[2rfh]], [[3fx6]], [[3fvl]], [[3hlp]], [[3huv]], [[3kgq]] – bCPA + inhibitor&lt;br /&gt;<br /> **[[3i1u]] – bCPA + thiirane&lt;br /&gt;<br /> **[[2ctb]], [[2ctc]] – bCPA + phenyl lactate&lt;br /&gt;<br /> **[[4oxd]] – SpCP + peptidoglycan&lt;br /&gt;<br /> *''CPA complex with protein''<br /> **[[3fju]] – hCPA1 + ascaris inhibitor&lt;br /&gt;<br /> **[[1dtd]] – hCPA2 + metallo-CP inhibitor&lt;br /&gt; <br /> **[[2bo9]] – hCPA4 hydrolase domain + latexin&lt;br /&gt;<br /> **[[4bd9]] - hCPA4 hydrolase domain + SMCI inhibitor&lt;br /&gt;<br /> **[[4a94]] – hCPA4 + nerita versicolor inhibitor&lt;br /&gt;<br /> **[[1zlh]] – bCPA + tick inhibitor&lt;br /&gt;<br /> **[[4cpa]] – bCPA + potato inhibitor&lt;br /&gt;<br /> **[[2abz]] - bCPA + metallo-CP inhibitor&lt;br /&gt;<br /> *'''Procarboxypeptidase A'''<br /> **[[1aye]] – hPCPA2 &lt;br /&gt;<br /> **[[1o6x]] – hPCPA2 activation domain – NMR&lt;BR /&gt;<br /> **[[2boa]] – hPCPA4&lt;br /&gt;<br /> **[[1fon]] – bPCPA subunit III&lt;br /&gt;<br /> **[[1pyt]] – bPCPA + proproteinase E + chymotrypsinogen C&lt;br /&gt;<br /> **[[1jqg]] – PCPA – Cotton bollworm&lt;br /&gt;<br /> *'''Carboxypeptidase B'''<br /> **[[3d66]] – hCPB 2&lt;br /&gt;<br /> **[[3d68]] – hCPB 2 (mutant)&lt;br /&gt;<br /> **[[3lms]] – hCPB 2 + protein inhibitor&lt;br /&gt;<br /> **[[5hvf]], [[5hvg]], [[5hvh]] – hCPB 2 (mutant) + nanobody inhibitor&lt;br /&gt;<br /> **[[7nee]], [[7neu]] – hCPB 2 + inhibitor&lt;br /&gt;<br /> **[[4p10]] – hCPB 2 (mutant) + inhibitor&lt;br /&gt;<br /> **[[3d67]] – hCPB 2 + GEMSA&lt;br /&gt;<br /> **[[1zli]] - hCPB + tick inhibitor&lt;br /&gt;<br /> **[[1cpb]], [[3dgv]] – bCPB &lt;br /&gt;<br /> **[[3d4u]], [[3osl]] – bCPB + CP inhibitor&lt;br /&gt;<br /> **[[3glj]] – pCPB residues 16-416 - pig&lt;br /&gt;<br /> **[[5jc6]] – pCPB catalytic domain residues 111-416 &lt;br /&gt;<br /> **[[3wab]], [[3wc5]], [[3wc6]], [[3wc7]], [[5lyf]], [[5lyi]], [[5lyl]], [[4z65]], [[4uia]], [[2piy]], [[2piz]], [[2pj0]], [[2pj1]], [[2pj2]], [[2pj3]], [[2pj4]], [[2pj5]], [[2pj6]], [[2pj7]], [[2pj8]], [[2pj9]], [[2pja]], [[2pjb]], [[2pjc]], [[5j1q]], [[5zeq]] – pCPB catalytic domain + inhibitor&lt;br /&gt;<br /> **[[5lyd]], [[4uib]] – pCPB catalytic domain (mutant) + inhibitor&lt;br /&gt;<br /> **[[5lrg]], [[5lrj]], [[5lrk]] – pCPB catalytic domain + anabaenopepsin peptide&lt;br /&gt;<br /> **[[2c1c]] – CPB – Corn earworm&lt;br /&gt;<br /> *'''Procarboxypeptidase B'''<br /> **[[1kwm]] - hPCPB&lt;br /&gt;<br /> **[[1pba]] – pPCPB activation domain – NMR&lt;BR /&gt;<br /> **[[1nsa]] – pPCPB&lt;br /&gt;<br /> **[[1z5r]] - pPCPB catalytic domain&lt;br /&gt;<br /> **[[1pca]] – pPCPB + valine&lt;br /&gt;<br /> **[[1zg7]], [[1zg8]], [[1zg9]] – pPCPB + inhibitor&lt;br /&gt;<br /> *'''Carboxypeptidase D'''<br /> **[[5aq0]] – hCPD transthyretin-like domain&lt;br /&gt;<br /> **[[1qmu]] – dCPD domain II - duck &lt;br /&gt;<br /> **[[1h8l]] - dCPD domain II + GEMSA&lt;br /&gt;<br /> **[[3mn8]] – DmCPD + GEMSA – ''Drosophila melanogaster''&lt;br /&gt;<br /> *'''Dipeptidyl carboxypeptidase I'''<br /> **[[2iul]], [[2iux]] – hCPI (mutant) &lt;br /&gt;<br /> **[[2c6f]] – hCPI N domain&lt;br /&gt;<br /> **[[2x8y]] – DmCPI &lt;br /&gt;<br /> **[[5l43]] – AhCPI – ''Astrosporangium hypotensionis''&lt;br /&gt;<br /> *''Dipeptidyl carboxypeptidase I complexes''<br /> **[[2oc2]], [[2xy9]], [[2xyd]] – hCPI + phosphate derivative&lt;br /&gt;<br /> **[[3nxq]] - hCPI (mutant) + phosphate derivative&lt;br /&gt;<br /> **[[3bkk]], [[3bkl]], [[3l3n]] – hCPI + inhibitor&lt;br /&gt;<br /> **[[2ydm]], [[3zqz]] – hCPI + captopril derivative&lt;br /&gt;<br /> **[[2x8z]], [[2x90]], [[2x91]], [[2x92]], [[2x93]], [[2x94]], [[2x95]], [[2x96]], [[2x97]] – DmCPI + anti-hypersensitive drug&lt;br /&gt;<br /> **[[2xhm]] - DmCPI + phosphate derivative&lt;br /&gt;<br /> **[[5l44]] – AhCPI + peptide inhibitor &lt;br /&gt;<br /> *'''Carboxypeptidase L'''<br /> **[[1ivy]]– hCPL <br /> *'''Carboxypeptidase M'''<br /> **[[1uwy]] – hCPM<br /> *'''Carboxypeptidase N'''<br /> **[[2nsm]] – hCPN catalytic domain<br /> *'''Carboxypeptidase O'''<br /> **[[5mrv]] – hCPO + metallo-CP inhibitor&lt;br /&gt;<br /> *'''Carboxypeptidase S9'''<br /> **[[8wt1]] – CPS9 – ''Geobacillus stearothermophilus''&lt;br /&gt;<br /> *'''Carboxypeptidase T'''<br /> **[[1obr]], [[3qnv]] – TvCPT – ''Thermoaclinomyces vulgaris''&lt;br /&gt;<br /> **[[3prt]], [[3v38]], [[4ihm]], [[8qvo]] – TvCPT (mutant)&lt;br /&gt;<br /> **[[4djl]], [[6sn6]], [[6go2]], [[6t9y]], [[6tnk]] – TvCPT + sulfamoyl derivative&lt;br /&gt;<br /> **[[4iav]], [[6f79]], [[6f75]], [[6f6q]], [[6z28]] – TvCPT (mutant) + sulfamoyl derivative&lt;br /&gt;<br /> **[[4duk]] – TvCPT + benzyl succinic acid&lt;br /&gt;<br /> **[[4f8z]] – TvCPT + leucine derivative&lt;br /&gt;<br /> **[[4ik2]] – TvCPT (mutant) + leucine derivative&lt;br /&gt;<br /> **[[4gm5]] – TvCPT + arginine derivative&lt;br /&gt;<br /> **[[3v7z]] – TvCPT + GEMSA&lt;br /&gt;<br /> **[[7q87]] – TvCPT + phenyllactic acid&lt;br /&gt;<br /> *'''Carboxypeptidase Y'''<br /> **[[1obr]], [[1wpx]] – yCPY + CPY inhibitor - yeast<br /> *'''Serine carboxypeptidase'''<br /> **[[3sc2]] – wSCP II – wheat&lt;br /&gt;<br /> **[[1ysc]], [[1cpy]] – ySCP&lt;br /&gt; <br /> **[[2j7v]] – SeSCP – ''Synechococcus elongatus''&lt;br /&gt;<br /> **[[2j9o]] – SeSCP (mutant)<br /> *''Serine carboxypeptidase complexes''<br /> **[[1whs]], [[1wht]] - wSCP II + benzylsuccinate&lt;br /&gt;<br /> **[[1bcr]], [[1bcs]] - wSCP II + antipain + arginine&lt;br /&gt;<br /> **[[2j8y]] – SeSCP + penicillin&lt;br /&gt;<br /> **[[2jbf]] - SeSCP (mutant) + penicillin<br /> *'''Arginine carboxypeptidase'''<br /> **[[3be7]], [[3dug]] – RCP&lt;br /&gt;<br /> **[[3mtw]] – RCP + arginine derivative – ''Caulobacter vibrioides''<br /> *'''D-alanyl-D-alanine carboxypeptidase'''<br /> **[[1w79]], [[1w8q]] – AACP – ''Actinomadura''&lt;br /&gt;<br /> **[[4rye]] – MtAACP &lt;br /&gt;<br /> **[[5fsr]] – EcAACP &lt;br /&gt;<br /> **[[5tr7]] – AACP – ''Vibrio cholerae''&lt;br /&gt;<br /> **[[6osu]] – AACP – ''Francisella tularensis''&lt;br /&gt;<br /> **[[3pte]], [[1skf]] – StAACP – ''Streptomyces''&lt;br /&gt;<br /> **[[1es2]], [[1es3]], [[1es4]], [[1es5]], [[1esi]], [[1j9m]] – StAACP (mutant) &lt;br /&gt;<br /> **[[1cef]], [[1ceg]], [[1hvb]], [[1pw1]], [[1pw8]], [[1pwc]], [[1pwd]], [[1pwg]] – StAACP + antibiotic&lt;br /&gt;<br /> **[[1ikg]], [[1iki]] – StAACP + peptidoglycan fragment&lt;br /&gt;<br /> **[[1mpl]] - StAACP + phosphonate inhibitor&lt;br /&gt;<br /> **[[1scw]], [[1sde]] - StAACP + cyclic phosphate inhibitor&lt;br /&gt;<br /> **[[1yqs]] - StAACP + sultam inhibitor&lt;br /&gt;<br /> **[[1lbu]] – SaAACP + Zn – ''Streptomyces albus''&lt;br /&gt;<br /> **[[6c39]] – AACP + Zn – ''Staphylococcus aureus''&lt;br /&gt;<br /> **[[5zhf]] – EfAACP + Zn – ''Enterococcus faecalis''&lt;br /&gt;<br /> **[[5hnm]] – EfAACP (mutant) + Zn &lt;br /&gt;<br /> **[[6a6a]] – EfAACP + Zn + Ala &lt;br /&gt;<br /> **[[5zhw]] – EfAACP + Zn + Ala-Ala&lt;br /&gt;<br /> **[[2wke]], [[1w8y]], [[2vgj]], [[2vgk]], [[4ben]] - AcAACP + antibiotic&lt;br /&gt;<br /> **[[2xdm]], [[2xk1]], [[2xln]], [[2y4a]], [[2y55]], [[2y59]], [[3zvt]], [[3zvw]], [[4b4x]], [[4b4z]] – AcAACP + boronic acid derivative&lt;br /&gt;<br /> **[[3zcz]] – AcAACP + inhibitor&lt;br /&gt;<br /> **[[5j8x]] – EcAACP + inhibitor&lt;br /&gt;<br /> **[[6ntz]] – EcAACP + meropenem&lt;br /&gt;<br /> *β-lactamase/D-alanine carboxypeptidase<br /> **[[5evi]] - LACP – ''Pseudomonas syringae''&lt;br /&gt;<br /> **[[3ozh]], [[3rju]] – ACP – ''Yersinia pestis''&lt;br /&gt;<br /> *'''Glutamate carboxypeptidase II'''<br /> **[[1z8l]], [[2oot]] – hECP II&lt;br /&gt;<br /> **[[2c6c]], [[2jbj]], [[2jbk]], [[2or4]], [[3d7d]], [[3d7f]], [[3d7g]], [[3d7h]], [[3iww]], [[3sjf]], [[4jyw]], [[4jz0]], [[4lqg]], [[5ely]], [[5d29]], [[4x3r]], [[4w9y]], [[6hkz]], [[6hkj]], [[6h7z]], [[6h7y]], [[6f5l]], [[6ety]], [[6rbc]], [[6skh]], [[8bo8]], [[8bol]], [[8bow]] – hECP II + inhibitor&lt;br /&gt;<br /> **[[6fe5]], [[6ez9]], [[5of0]], [[6s1x]] - hECP II (mutant) + inhibitor&lt;br /&gt;<br /> **[[4p44]], [[4p45]], [[4p4e]], [[4p4d]], [[4p4f]], [[4p4i]], [[4p4j]], [[4p4b]] – hECP II + phosphoramidate inhibitor&lt;br /&gt;<br /> **[[4ngm]], [[4ngn]], [[4ngp]], [[4ngq]], [[4ngr]], [[4ngs]], [[4ngt]], [[4oc0]], [[4oc1]], [[4oc2]], [[4oc3]], [[4oc4]], [[4oc5]], [[4ome]], [[5o5u]], [[5o5t]], [[5o5r]] - hECP II + urea derivative&lt;br /&gt;<br /> **[[2c6g]] - hECP II + glutamate&lt;br /&gt;<br /> **[[4mcr]], [[4mcs]] - hECP II (mutant) + glutamate&lt;br /&gt;<br /> **[[4mcp]], [[4mcq]], [[5f09]] - hECP II (mutant) + glutamate derivative&lt;br /&gt;<br /> **[[3bhx]], [[3bi0]], [[3bi1]] - hECP II + transition state analog&lt;br /&gt;<br /> **[[2cij]] – hECP II + methionine&lt;br /&gt;<br /> **[[2pvv]] - hECP II + serine-sulfate&lt;br /&gt;<br /> **[[2c6p]], [[2pvw]] - hECP II + phosphate derivative&lt;br /&gt;<br /> **[[3rbu]] – hECP II + PMPA&lt;br /&gt;<br /> **[[6rti]] – hECP II + aptamer&lt;br /&gt;<br /> **[[3bxm]] – hECP II (mutant) + dipeptide&lt;br /&gt;<br /> **[[3sje]], [[3sjg]], [[3sjx]] - hECP II (mutant) + inhibitor&lt;br /&gt;<br /> **[[2xef]], [[2xeg]], [[2xei]], [[2xej]] – hECP II + antibody-recruiting molecule&lt;br /&gt;<br /> **[[1cg2]] – ECP II – ''Pseudomonas''<br /> *'''Glutamate carboxypeptidase III'''<br /> **[[3fec]] – hECP III&lt;br /&gt;<br /> **[[3fed]] - hECP III + transition state analog&lt;br /&gt;<br /> **[[3fee]] – hECP III + inhibitor&lt;br /&gt;<br /> **[[3ff3]] - hECP III + glutamate<br /> *'''Prolyl carboxypeptidase'''<br /> **[[3n2z]] - hPCP<br /> *'''Tubulinyl-Tyr carboxypeptidase'''<br /> **[[6j4u]], [[6j91]], [[6j9h]], [[6k81]], [[6lpg]], [[6ocf]] – hTTCP 1 + vasohibin-binding protein&lt;br /&gt;<br /> **[[6j8n]], [[6nvq]] – hTTCP 1 (mutant) + vasohibin-binding protein&lt;br /&gt;<br /> **[[6j7b]] – hTTCP 1 + vasohibin-binding protein + tubulinyl-Tyr derivative&lt;br /&gt;<br /> **[[6j8f]] – hTTCP 1 + vasohibin-binding protein + tubulin peptide&lt;br /&gt;<br /> **[[6j7b]], [[6ocg]] – hTTCP 1 + vasohibin-binding protein + Tyr derivative&lt;br /&gt;<br /> **[[6och]] – hTTCP 1 + vasohibin-binding protein + parthenolide&lt;br /&gt;<br /> **[[6wsl]] – hTTCP 1 + small vasohibin-binding protein + tubulin alpha-1A chain + tubulin beta-3 chain – Cryo EM&lt;BR /&gt;<br /> **[[6j4o]], [[6j4p]], [[6j4q]], [[6j4s]], [[6j4u]], [[6j8n]], [[6j91]], [[6qby]] – hTTCP 2 + vasohibin-binding protein&lt;br /&gt;<br /> **[[6j4p]] – hTTCP 2 + small vasohibin-binding protein + Tyr derivative&lt;BR /&gt;<br /> **[[6j4v]] – hTTCP 2 + small vasohibin-binding protein + tubulin alpha-1B chain&lt;BR /&gt;<br /> **[[6j8o]] – hTTCP 2 + vasohibin-binding protein + peptide&lt;br /&gt;<br /> **[[7zcw]] – hTTCP 2 + small vasohibin-binding protein + tubulin alpha-1B chain + tubulin beta-2B chain – Cryo EM&lt;BR /&gt;<br /> **[[6jzc]], [[6jze]] – mTTCP 2 + vasohibin-binding protein - mouse&lt;br /&gt;<br /> **[[6jzd]] – mTTCP 2 + vasohibin-binding protein + peptide&lt;br /&gt;<br /> *'''Angiotensin-converting enzyme-related carboxypeptidase'''<br /> * See [[Angiotensin-Converting Enzyme]]<br /> *'''M32 carboxypeptidase'''<br /> **[[3hq2]] – BsCP <br /> *'''Muramoyl pentapeptide carboxypeptidase'''<br /> **[[1lbu]] – SaCP&lt;br /&gt;<br /> *'''Muramoyl tetrapeptide carboxypeptidase'''<br /> **[[6uuk]] – CP – Oxalobacter formigenes&lt;br /&gt;<br /> *'''Metallo-carboxypeptidase'''<br /> **[[4a37]] – PaCP – ''Pseudomonas aeruginosa''&lt;br /&gt;<br /> **[[4a38]] – PaCP + benzyl succinic acid&lt;br /&gt;<br /> **[[4a39]] – PaCP + GEMSA&lt;br /&gt;<br /> <br /> }}<br /> <br /> [[Category:Topic Page]]</div>

Openfox https://proteopedia.org/index.php?title=Adenosine_deaminase_3D_structures&diff=4433698 2026-03-29T10:38:55Z

<p>Openfox: Fix TreeAndMenu broken list structure</p> <hr /> <div>== 3D Structures of [[Adenosine deaminase]] ==<br /> <br /> Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}<br /> {{#tree:id=OrganizedByTopic|openlevels=0|<br /> *Adenosine deaminase<br /> **[[3iar]] – hADA + Ni - human&lt;BR /&gt;<br /> **[[7rtg]] – hADA1 + Zn&lt;BR /&gt;<br /> **[[3lgd]] – hADA2 + Zn&lt;BR /&gt;<br /> **[[1vfl]] – bADA + Zn - bovine&lt;BR /&gt;<br /> **[[3mvt]] – mADA – mouse&lt;BR /&gt;<br /> **[[3mvi]] – mADA + Zn&lt;BR /&gt;<br /> **[[3ou8]] – PaADA + Zn – ''Pseudomonas aeruginosa''&lt;BR /&gt;<br /> **[[2amx]] – ADA + Co – ''Plasmodium yoeli''&lt;BR /&gt;<br /> **[[4gxw]] – ADA + Zn – ''Burkholderia ambifaria'' &lt;BR /&gt;<br /> **[[8fnv]], [[8hrc]] – EcADA – ''Escherichia coli'' – Cryo EM&lt;br /&gt;<br /> *Adenosine deaminase complex with nucleotide<br /> **[[1krm]] – bADA + Zn + adenosine analog &lt;BR /&gt;<br /> **[[1add]] – mADA + Zn + deaza-adenosine &lt;BR /&gt;<br /> **[[3km8]] – mADA (mutant) + Zn + deaza-adenosine &lt;BR /&gt;<br /> **[[2ada]] – mADA + Zn + transition state analog&lt;BR /&gt;<br /> **[[1fkw]], [[1fkx]], [[1uio]], [[1uip]] – mADA (mutant) + Zn + adenosine analog&lt;BR /&gt;<br /> **[[1a4m]] – mADA + Zn + adenosine analog&lt;BR /&gt;<br /> **[[2pgf]] – PvADA + Zn + adenosine – ''Plasmodium vivax''&lt;BR /&gt;<br /> **[[2pgr]] – PvADA + Zn + adenosine analog&lt;BR /&gt;<br /> **[[2qvn]] – PvADA + guanosine &lt;BR /&gt;<br /> **[[3pan]] – PaADA + Zn + hypoxanthine &lt;BR /&gt;<br /> **[[3pao]] – PaADA + Zn + adenine &lt;BR /&gt;<br /> **[[3rys]] – ADA + Zn + adenine – ''Arthrobacter aurescens''&lt;BR /&gt;<br /> **[[6ii7]] – ADA (mutant) + Zn + hypoxanthine + inosine – ''Plasmodium falciparum''&lt;br&gt;&lt;BR /&gt;<br /> *Adenosine deaminase complex with inhibitor<br /> **[[3lgg]] – hADA2 + Zn + coformycin&lt;BR /&gt;<br /> **[[1ndv]], [[1ndw]], [[1ndy]], [[1ndz]], [[1o5r]], [[1qxl]], [[1uml]], [[1v79]], [[1v7a]], [[1wxy]], [[1wxz]], [[2e1w]], [[2z7g]] – bADA + Zn + inhibitor&lt;BR /&gt;<br /> **[[1a4l]] – mADA + Zn + inhibitor&lt;BR /&gt;<br /> **[[3ewc]] – PvADA + Zn + inhibitor&lt;BR /&gt;<br /> **[[3ewd]] – PvADA (mutant) + Zn + inhibitor&lt;BR /&gt;<br /> **[[3pbm]] – PaADA + Zn + chloropurine &lt;BR /&gt;<br /> **[[6n9m]] – ADA + Zn + pentostatin – ''Salmonella typhimurium''&lt;BR /&gt;<br /> **[[6n91]] – ADA + Zn + pentostatin – ''Vibrio cholerae''&lt;BR /&gt;<br /> *Adenosine deaminase complex with protein<br /> **[[1w1i]] – bADA + Zn + dipeptidyl peptidase IV&lt;BR /&gt;<br /> **[[2bgn]] – bADA + Zn + dipeptidyl peptidase IV + HIV1 TAT protein peptide&lt;BR /&gt;<br /> *Double-stranded RNA-specific adenosine deaminase; domains – Zα 125-201; Zβ 294-366; 3rd RNA-binding 708-801; catalytic 299-729<br /> **[[1xmk]] – hADA Zα domain &lt;br /&gt;<br /> **[[1qgp]] – hADA Zα domain - NMR&lt;br /&gt;<br /> **[[2l54]], [[8gbc]], [[8gbd]] – hADA Zα domain (mutant) - NMR&lt;br /&gt;<br /> **[[2acj]], [[1qbj]], [[2gxb]], [[3f21]], [[3f22]], [[3f23]], [[3irq]], [[3irr]], [[5zu1]], [[5zuo]], [[5zup]] – hADA Zα domain + DNA&lt;br /&gt;<br /> **[[7zj1]] – hADA 3rd RNA-binding domain &lt;br /&gt;<br /> **[[2mdr]] – hADA 3rd RNA-binding domain - NMR&lt;br /&gt;<br /> **[[7zlq]] – hADA 3rd RNA-binding domain + RNA &lt;br /&gt;<br /> **[[1zy7]] – hADA catalytic domain + inositol hexakisphosphate&lt;br /&gt;<br /> **[[6vff]] – hADA catalytic domain + inositol hexakisphosphate + RNA&lt;br /&gt;<br /> **[[6d06]], [[5hp2]], [[5hp3]], [[5ed1]], [[5ed2]], [[7kfn]], [[8e0f]] – hADA catalytic domain + RNA&lt;br /&gt;<br /> **[[8e4x]] – hADA catalytic domain (mutant) + RNA&lt;br /&gt;<br /> **[[7c0j]] – hADA catalytic domain/histone H5 (mutant) + DNA&lt;br /&gt;<br /> **[[2b7t]], [[2b7v]] – rADA 1st RNA-binding domain – rat&lt;br /&gt;<br /> **[[2l3c]], [[2l3j]] – rADA 1st RNA-binding domain + RNA – NMR&lt;br /&gt;<br /> **[[2l2k]] – mADA residues 230-301 + RNA – NMR&lt;br /&gt;<br /> **[[2ljh]] – ADA DRBM domain – ''Drosophila melanogaster'' – NMR&lt;br /&gt;<br /> *tRNA-specific adenosine deaminase<br /> **[[3dh1]] – hADA subunit ADAT2&lt;br /&gt;<br /> **[[7nz7]], [[7nz8]], [[7nz9]] – mADA subunits ADAT2/ADAT3&lt;br /&gt;<br /> **[[7bv5]] – ADA subunits TAD2, TAD3 + Zn - yeast&lt;br /&gt;<br /> **[[7eey]] – ADA subunit TAD2 N-terminal – fission yeast&lt;br /&gt;<br /> **[[1z3a]], [[8e2r]], [[8e2s]]] – EcADA &lt;br /&gt;<br /> **[[8e2p]], [[8e2q]] – EcADA + DNA&lt;br /&gt;<br /> **[[6vpc]] – EcADA in SPCAS9 DNA adenine base editor – Cryo EM&lt;br /&gt;<br /> **[[2b3j]] – ADA + Zn + tRNA stem-loop – ''Staphylococcus aureus''&lt;BR /&gt;<br /> **[[1wwr]] – ADA – ''Aquifex aeolicus''&lt;br /&gt;<br /> **[[2nx8]] – ADA (mutant) + Zn – ''Streptococcus pyogenes''&lt;br /&gt;<br /> **[[7cph]] – ADA + Zn – ''Bacillus subtilis''&lt;br /&gt;<br /> <br /> <br /> }}<br /> [[Category: Topic Page]]</div>

Openfox https://proteopedia.org/index.php?title=Abscisic_acid_receptor_3D_structures&diff=4433697 2026-03-29T10:38:54Z

<p>Openfox: Fix TreeAndMenu broken list structure</p> <hr /> <div>== 3D Structures of [[Abscisic acid receptor]] ==<br /> <br /> Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}<br /> {{#tree:id=OrganizedByTopic|openlevels=0|<br /> *Abscisic acid receptor PYL1&lt;br&gt;''<br /> **[[3kay]] – AtPYL1 -''Arabidopsis thaliana''&lt;br /&gt;<br /> **[[7z1p]] – AtPYL1 (mutant) &lt;br /&gt;<br /> **[[7z1r]] – AtPYL1 (mutant) + ABA&lt;br /&gt;<br /> **[[7z1s]] – AtPYL1 + ligand &lt;br /&gt;<br /> **[[7z1q]] – AtPYL1 (mutant) + ligand &lt;br /&gt;<br /> **[[3jrs]] – AtPYL1 + ABA derivative &lt;br /&gt;<br /> **[[3kdj]], [[3jrq]] – AtPYL1 + protein phosphatase 2C + ABA derivative&lt;br /&gt;<br /> **[[3nmn]] – AtPYL1 + protein phosphatase 2C + pyrabactin&lt;br /&gt;<br /> **[[3nef]], [[3neg]] – AtPYL1 + pyrabactin &lt;br /&gt;<br /> **[[8ay6]], [[8ay7]], [[8ay8]], [[8ay9]], [[8aya]] – PYL1 (mutan) + protein phosphatase 2C + ABA derivative – sweet orange&lt;br /&gt;<br /> *Abscisic acid receptor pyrabactin-rsistant PYR1<br /> **[[3k3k]], [[3k90]], [[3wg8]] – AtPYR1 + ABA &lt;br /&gt;<br /> **[[3qn1]], [[5or2]], [[5or6]] – AtPYR1 + protein phosphatase 2C + ABA derivative&lt;br /&gt;<br /> **[[8ey0]] – AtPYR1 + protein phosphatase 2C + mandipropamide &lt;br /&gt;<br /> **[[4wvo]] – AtPYR1 (mutant) + protein phosphatase 2C + mandipropamide &lt;br /&gt;<br /> **[[3zvu]] – AtPYR1 (mutant) + protein phosphatase 2C + ABA&lt;br /&gt;<br /> **[[3njo]], [[5ur4]] – AtPYR1 + pyrabactin &lt;br /&gt;<br /> **[[5ur5]] – AtPYR1 + agonist &lt;br /&gt;<br /> **[[5ygv]] – AtPYR1 + antagonist &lt;br /&gt;<br /> **[[5ur6]] – AtPYR1 + cyanabactin &lt;br /&gt;<br /> **[[5ujv]] – PYR1 + ABA – ''Eschericha coli''&lt;br /&gt;<br /> *Abscisic acid receptor PYL2<br /> **[[3kl1]], [[3kaz]], [[3kdh]] – AtPYL2 &lt;br /&gt;<br /> **[[5jnn]], [[3kb0]], [[3kdi]] – AtPYL2 + ABA derivative &lt;br /&gt;<br /> **[[4lg5]], [[4la7]] – AtPYL2 + protein phosphatase 2C + quinabactin&lt;br /&gt;<br /> **[[3nmt]], [[3nmv]] – AtPYL2 (mutant) + protein phosphatase 2C + pyrabactin&lt;br /&gt;<br /> **[[4lga]], [[4lgb]], [[5vr7]] – AtPYL2 + protein phosphatase 2C + quinolin derivative&lt;br /&gt;<br /> **[[3ujl]], [[3kb3]], [[5vr6]], [[5vro]], [[5vs5]], [[5vsq]], [[5vsr]], [[5vt7]] – AtPYL2 + protein phosphatase 2C + ABA derivative &lt;br /&gt;<br /> **[[3nmh]], [[3nj0]], [[3ns2]], [[3nr4]] – AtPYL2 + pyrabactin &lt;br /&gt;<br /> **[[3nmp]], [[3nj1]] – AtPYL2 (mutant) + pyrabactin &lt;br /&gt;<br /> **[[7mwn]] – AtPYL2 (mutant) + HAB-1 &lt;br /&gt;<br /> *Abscisic acid receptor PYL3<br /> **[[3klx]] – AtPYL3 &lt;br /&gt;<br /> **[[5jo1]], [[5jo2]], [[4ds8]] – AtPYL3 + protein phosphatase 2C + ABA derivative &lt;br /&gt;<br /> **[[4jda]], [[4dsb]], [[4dsc]] – AtPYL3 + ABA derivative &lt;br /&gt;<br /> **[[5zch]] – PYL3 + protein phosphatase 2C + ABA derivative - rice&lt;br /&gt;<br /> *Abscisic acid receptor PYL5<br /> **[[4jdl]] – AtPYL5 &lt;br /&gt;<br /> *Abscisic acid receptor PYL9<br /> **[[3w9r]], [[3oqu]] – AtPYL9 + ABA derivative &lt;br /&gt;<br /> *Abscisic acid receptor PYL10<br /> **[[3uqh]], [[3rt2]] – AtPYL10 &lt;br /&gt;<br /> **[[3r6p]] – AtPYL10 + ABA &lt;br /&gt;<br /> **[[3rt0]] – AtPYL10 + protein phosphatase 2C &lt;br /&gt;<br /> **[[6nwb]] – AtPYR10 + hexabactin &lt;br /&gt;<br /> **[[6nwc]] – AtPYR10 + agonist &lt;br /&gt;<br /> **[[7mlc]], [[7mld]] – AtPYR10 + antabactin &lt;br /&gt;<br /> *Abscisic acid receptor PYL13<br /> **[[4n0g]] – AtPYL13 + protein phosphatase 2C &lt;br /&gt;<br /> **[[3oji]] – AtPYL13 + pyrabactin &lt;br /&gt;<br /> <br /> }}<br /> [[Category: Topic Page]]</div>

Openfox https://proteopedia.org/index.php?title=2-oxoglutarate_dehydrogenase_3D_structures&diff=4433696 2026-03-29T10:38:53Z

<p>Openfox: Fix TreeAndMenu broken list structure</p> <hr /> <div>== 3D structures of [[2-Oxoglutarate Dehydrogenase]]==<br /> Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}} - For a general description of the protein see [[2-Oxoglutarate Dehydrogenase]]<br /> {{#tree:id=OrganizedByTopic|openlevels=0|<br /> *E1 component<br /> **[[7wgr]] – h2OGDH residues 129-1023 + TDP – human - Cryo EM&lt;br /&gt;<br /> **[[8i0k]] – h2OGDH + TCAIM - Cryo EM&lt;br /&gt;<br /> **[[2jgd]] - Ec2OGDH E1 - ''Escherichia coli'' &lt;br /&gt;<br /> *E2 component or dihydrolipoamide succinyltransferase<br /> **[[6h05]] – h2OGDH residues 218-453 – Cryo EM&lt;br /&gt;<br /> **[[7uol]] – 2OGDH residues 1-455 – bovine - Cryo EM&lt;br /&gt;<br /> **[[1bal]], [[1bbl]], [[2btg]], [[2bth]], [[2cyu]] - EcDLST E3-binding domain - NMR &lt;br /&gt;<br /> **[[1ghj]], [[1ghk]] - AvDLST lipoyl-binding domain - NMR - ''Azotobacter vinelandii'' &lt;br /&gt;<br /> **[[1pmr]] - EcDLST lipoyl-binding domain - NMR&lt;br /&gt;<br /> **[[1e2o]], [[1c4t]], [[1scz]], [[6pbr]] - EcDLST catalytic domain&lt;br /&gt;<br /> **[[2eq7]] – Tt2OGDH E3+E2 – ''Thermus thermophilus''&lt;br /&gt;<br /> **[8oiu]] – 2OGDH residues 1-420 – ''Themochaetoides thermophilia'' - Cryo EM&lt;br /&gt;<br /> * ===E1/E2 component===<br /> **[[8p5s]], [[8p5t]], [[8p5u]] – Cg2OGDH residues 98-1221 + TPP + acetyl-CoA – ''Corynebacterium glutamicum'' - Cryo EM&lt;br /&gt;<br /> **[[8p5w]] – Cg2OGDH + acetyl-CoA + thiazol derivative - Cryo EM&lt;br /&gt;<br /> **[[8p5x]] – Cg2OGDH + TPP + OGDH inhibitor - Cryo EM&lt;br /&gt;<br /> **[[8p5v]] – Cg2OGDH + TPP + acetyl-CoA + succinyl-CoA - Cryo EM&lt;br /&gt;<br /> **[[8p5r]] – 2OGDH + GARA + TPP – ''Mycobacterium smegmatis''&lt;br /&gt;<br /> *E3 component<br /> **[[Dihydrolipoamide dehydrogenase]]<br /> <br /> }}<br /> [[Category: Topic Page]]</div>

Openfox https://proteopedia.org/index.php?title=Thiol_peroxidase_3D_structures&diff=4433695 2026-03-29T10:38:52Z

<p>Openfox: Fix TreeAndMenu broken list structure</p> <hr /> <div>Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}} - For a general description of the protein see [[Thiol:disulfide interchange protein]]<br /> <br /> {{#tree:id=OrganizedByTopic|openlevels=0|<br /> * [[1q98]] – TPX – ''Haemophilus influenzae''&lt;br /&gt;<br /> * [[1qxh]], [[3hvs]], [[3i43]], [[4af2]] – EcTPX – ''Escherichia coli''&lt;br /&gt;<br /> * [[3hvv]], [[3hvx]] - EcTPX (mutant) &lt;br /&gt;<br /> * [[1xvq]] – TPX – ''Mycobacterium tuberculosis''&lt;br /&gt;<br /> * [[2xpd]], [[2xpe]], [[3zrd]], [[3zre]] – YpTPX – ''Yersinia pseudotuberculosis''&lt;br /&gt;<br /> * [[2yjh]] - YpTPX (mutant) &lt;br /&gt;<br /> * [[4gqc]], [[4gqf]] – TPX – ''Aeropyrum pernix&lt;''br /&gt;<br /> * [[6udg]] – TPX – ''Elizabethkingia anophelis''&lt;br /&gt;<br /> * For yeast thiol peroxidase see [[Peroxiredoxin]]<br /> <br /> }}<br /> <br /> [[Category:Topic Page]]</div>

Openfox https://proteopedia.org/index.php?title=Riboswitch_3D_structures&diff=4433694 2026-03-29T10:38:51Z

<p>Openfox: Fix TreeAndMenu broken list structure</p> <hr /> <div>==3D structures of riboswitch==<br /> <br /> Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}<br /> {{#tree:id=OrganizedByTopic|openlevels=0|<br /> *Adenine riboswitch<br /> **[[1y26]], [[4tzx]], [[4tzy]], [[4xnr]], [[5swd]], [[5swe]], [[5uza]], [[6vwt]], [[6vwv]] – VvAR + adenine – ''Vibrio vulnificus''&lt;br /&gt;<br /> **[[5e54]] – VvAR &lt;br /&gt;<br /> **[[3ivn]] – BsAR (mutant) – ''Bacillus subtilis''&lt;br /&gt;<br /> **[[3la5]] - BsAR (mutant) + azacytosine&lt;br /&gt;<br /> *Guanine riboswitch<br /> **[[1y27]] – BsGR residues 185-252 + guanine&lt;br /&gt; <br /> **[[2g9c]], [[3fo4]], [[3fo6]], [[3ges]], [[3gog]], [[3rkf]] - BsGR (mutant) + guanine derivative&lt;br /&gt;<br /> **[[3got]] - BsGR (mutant) + adenine derivative&lt;br /&gt;<br /> **[[2xo1]] - BsGR aptamer domain + adenine derivative&lt;br /&gt;<br /> **[[3g4m]], [[3ger]] - BsGR + guanine derivative&lt;br /&gt;<br /> **[[2xnz]], [[6ubu]], [[6uc7]], [[6uc8]], [[6uc9]] - BsGR aptamer domain + guanine derivative&lt;br /&gt;<br /> **[[2xo0]] - BsGR aptamer domain + triazine derivative&lt;br /&gt;<br /> **[[5c7u]], [[5c7w]] - BsGR + hypoxanthine&lt;br /&gt;<br /> **[[2ees]], [[2eet]], [[2eeu]], [[2eev]], [[2eew]] - BsGR (mutant) + hypoxanthine&lt;br /&gt;<br /> **[[3gao]] - BsGR + xanthine&lt;br /&gt;<br /> **[[2xnw]] – BsGR + Mn&lt;br /&gt;<br /> **[[4fe5]], [[4fej]], [[4fel]], [[4fen]], [[4feo]], [[4fep]] – sGR + hypoxanthine – synthetic&lt;br /&gt;<br /> **[[6p2h]] – sGR &lt;br /&gt;<br /> **[[2b57]] – GR + purine derivative&lt;br /&gt;<br /> *Guanidine riboswitch<br /> **[[5nwq]], [[5ny8]], [[5nz3]], [[5nz6]], [[5o62]] – TfGNR + guanidine derivative – ''Thermobifida fusca''&lt;br /&gt;<br /> **[[5o69]] – TfGNR + agmatine &lt;br /&gt;<br /> **[[5nzd]] – TfGNR + CDP derivative&lt;br /&gt;<br /> **[[7mlw]] – GNR + guanidine – ''Burkholderia''&lt;br /&gt;<br /> **[[6hbt]], [[6hbx]], [[6hc5]] – GNR + guanidine II + inhibitor – ''Gloeobacter violaceus''&lt;br /&gt;<br /> **[[5t83]] – GNR + guanidine – ''Sulfobacillus acidophilus'' &lt;br /&gt;<br /> **[[5ndh]], [[5ndi]], [[5nef]], [[5neo]], [[5nep]], [[5neq]], [[5nex]], [[5nom]] – GNR + guanidine derivative – ''Gloeobacter violaceus'' &lt;br /&gt;<br /> **[[5vj9]], [[5vjb]] – GNR + guanidine – ''Pseudomonas aeruginosa'' &lt;br /&gt;<br /> *Xanthine riboswitch<br /> **[[7elp]], [[7elq]], [[7elr]], [[7els]] – XR + xanthine derivative – ''Ideonella''&lt;br /&gt;<br /> *Thiamine pyrophosphate riboswitch<br /> **[[2gdi]] – TPPR + TPP – synthetic<br /> **[[2hoj]], [[2hok]], [[2hol]] – EcTPPR + TPP + metal ion – ''Escherichia coli''<br /> **[[2hom]], [[8f4o]]– EcTPPR + TMP<br /> **[[2hoo]], [[2hop]] – EcTPPR + TPP analog<br /> **[[4nya]], [[4nyb]], [[4nyc]], [[7tdc]] – EcTPPR + pyrimidine derivative&lt;br /&gt;<br /> **[[4nyd]] – EcTPPR + hypoxanthine &lt;br /&gt;<br /> **[[4nyg]], [[7td7]], [[7tda]], [[7tdb]] – EcTPPR + thiamine derivative&lt;br /&gt;<br /> **[[2cky]], [[3d2g]], [[3d2v]], [[3d2x]] - TPPR + TPP analog – ''Arabidopsis thaliana''<br /> *S-adenosylmethionine riboswitch or SAM riboswitch<br /> **[[2gis]], [[4aob]], [[4b5r]], [[4l81]] – TtSAMR + SAM – ''Thermoanaerobacter tengcongensis''<br /> **[[3iqr]], [[2ydh]], [[2ygh]] - TtSAMR (mutant) + SAM<br /> **[[3iqp]] - TtSAMR<br /> **[[2qwy]], [[3e5c]], [[3e5e]], [[3e5f]], [[3iqn]] - SAMR + SAM – synthetic<br /> **[[4kqy]] – BsSAMR + SAM&lt;br /&gt;<br /> **[[3v7e]] – BsSAMR + Ybxf + SAM&lt;br /&gt;<br /> **[[4oqu]] - SAMR + SAM - synthetic&lt;br /&gt;<br /> **[[6c27]] - SAMR + GTP – ''Enterococcus faecalis''&lt;br /&gt;<br /> **[[6ues]], [[6wlq]], [[6wlr]] - MtSAMR – ''Mycobacterium tuberculosis''&lt;br /&gt;<br /> **[[6uet]] - MtSAMR + SAM&lt;br /&gt;<br /> **[[3gx5]], [[3gx6]], [[3gx7]] - TtSAMR + SAM &lt;br /&gt;<br /> **[[6laz]] - BaSAMR + U1 small nuclear ribonucleoprotein + GTP + SAM analog – ''Bifidobacterium angulatum''&lt;br /&gt;<br /> **[[6las]], [[6lax]] - BaSAMR + U1 small nuclear ribonucleoprotein + SAM&lt;br /&gt;<br /> **[[6lau]] - BaSAMR + U1 small nuclear ribonucleoprotein + SAH&lt;br /&gt;<br /> **[[7eaf]] – CsSAMR + SAM – ''Caldanaerobacter subterraneus''&lt;br /&gt;<br /> * S-adenosylhomocysteine riboswitch or SAH riboswitch<br /> **[[3npn]], [[3npq]] – SAHR + SAH – ''Ralstonia solanacearum''<br /> **[[6hag]] - SAMR + SAH – ''proteobacteria'' - NMR&lt;br /&gt;<br /> *SAM/SAH riboswitch<br /> **[[6ymk]] – RoSAM/SAH + adenosine derivative + cytidine derivative – ''Roseobacter''&lt;br /&gt;<br /> **[[6ylb]], [[6ymm]] – RoSAM/SAH + SAM&lt;br /&gt;<br /> **[[6ymi]] – RoSAM/SAH + AMP&lt;br /&gt;<br /> **[[6yl5]], [[6yml]] – RoSAM/SAH + SAH&lt;br /&gt;<br /> **[[6ymj]] – RoSAM/SAH + adenosine&lt;br /&gt;<br /> *NAD+ riboswitch<br /> **[[6tb7]], [[6tf1]], [[6tf2]], [[6tf3]], [[6tfe]], [[6tfg]], [[7d7y]] – CkNADR + ATP derivative – ''Candidatus koribacter''&lt;br /&gt;<br /> **[[6tf0]], [[6tff]], [[6tfh]] – CkNADR + NAD&lt;br /&gt;<br /> **[[8gxc]], [[8hb1]], [[8hb8]], [[8i3z]] – SmNADR II + NMN&lt;br /&gt;<br /> **[[8gxb]], [[8hba]] – SmNADR II + NAD&lt;br /&gt;<br /> **[[8hb3]] – SmNADR II + NR&lt;br /&gt;<br /> **[[7d7w]], [[7d7x]], [[7d7z]], [[7d81]], [[7d82]] – AbNADR + NAD - ''Acidobacteriaceae bacterium''&lt;br /&gt;<br /> **[[7d7v]] – AbNADR + NAD + U1 small nuclear ribonucleoprotein&lt;br /&gt;<br /> *Lysine riboswitch<br /> **[[3d0u]] – TmKR ligand-binding domain + Lysine – ''Thermotoga maritime''<br /> **[[4erj]] – TmKR + aminocaproic acid&lt;br /&gt;<br /> **[[4erl]] – TmKR + Lys + Gly&lt;br /&gt;<br /> *FMN riboswitch<br /> **[[6wjr]], [[6wjs]] - FnFMNR – ''Fusobacterium nucleatum''&lt;br /&gt;<br /> **[[3f2q]], [[3f2t]], [[3f2w]], [[3f2x]], [[3f2y]], [[3f30]], [[3f4e]] – FnFMNR + FMN<br /> **[[2yie]] - FnFMNR aptamer domain + FMN<br /> **[[3f4g]], [[3f4h]] – FnFMNR + flavin derivative<br /> **[[2yif]] - FnFMNR + GTP<br /> **[[6bfb]] – FnFMNR + inhibitor&lt;br /&gt;<br /> *Pre-queosine riboswitch<br /> **[[3fu2]], [[3k1v]] – BsPreq1R + queosine<br /> **[[3gca]] – TtPreq1R + queosine<br /> **[[3q50]], [[3q51]] – TtPreq1R aptamer domain + queosine<br /> **[[4jf2]] – Preq1R + GTP + deaza-aminomethyl guanine – ''Lactobacillus rhamnosus''&lt;br /&gt;<br /> **[[6vuh]], [[6vui]] – CsPreq1 &lt;br /&gt;<br /> **[[6e1s]], [[6e1t]], [[6e1u]], [[6e1v]], [[6e1w]], [[7e9e]], [[7e9i]] – CsPreq1 + probe&lt;br /&gt;<br /> **[[6xkn]], [[6xko]] – Preq1 + GTP + guanine derivative – ''Faecalibacterium prausnitzii''&lt;br /&gt;<br /> **[[7rex]], [[8fb3]] – Preq1 + guanine derivative – ''Carnobacterium antarcticum''&lt;br /&gt;<br /> **[[2miy]] – Preq1 + guanine derivative – ''Streptococcus pneumoniae'' - NMR&lt;br /&gt;<br /> **[[8fza]] – EcPreq1 III &lt;br /&gt;<br /> **[[2l1v]] – EcPreq1 I + PreQ1 - NMR &lt;br /&gt;&lt;br&gt;C-di-GMP riboswitch<br /> **[[3ucu]], [[3ucz]] – hGMPR + GpG &lt;br /&gt;<br /> **[[3ud3]], [[3ud4]] – hGMPR + GpA &lt;br /&gt;<br /> **[[3irw]], [[3mxh]] – VcGMPR + C-di-GMP + GTP + U1 small nuclear ribonucleoprotein – ''Vibrio cholerae''<br /> **[[3iwn]] – VcGMPR + C-di-GMP + U1 small nuclear ribonucleoprotein<br /> **[[3mum]], [[3mur]], [[3mut]] - VcGMPR (mutant) + C-di-GMP + U1 small nuclear ribonucleoprotein<br /> **[[3muv]] - VcGMPR (mutant) + C-di-AMP + U1 small nuclear ribonucleoprotein<br /> **[[3q3z]] - GMPR + C-di-GMP – ''Clostridium acetobutylicum''<br /> **[[4qk8]], [[4qka]] – GMPR + GTP – ''Thermoanaerobacter pseudethanolicus''&lt;br /&gt;<br /> **[[4qk9]] – GMPR + guanosine derivative – ''Thermovirga lienii''&lt;br /&gt;<br /> *Glycine riboswitch<br /> **[[6wlt]], [[6wlu]] – VcGlyR&lt;br /&gt;<br /> **[[3owi]], [[3oww]], [[3owz]] – VcGlyR + glycine<br /> **[[3ox0]], [[3oxe]], [[3oxj]], [[3oxm]] – VcGlyR + GDP + cytidine cyclic phosphate<br /> **[[3oxb]], [[3oxd]] – VcGlyR (mutant) + GDP + cytidine cyclic phosphate<br /> **[[6wll]], [[6wlm]] – FnGlyR&lt;br /&gt;<br /> **[[3p49]] – FnGlyR + U1 small nuclear ribonucleoprotein + glycine<br /> *Glutamine riboswitch<br /> **[[6qn3]] – GlnR II + Gln – ''Prochlorococcus''&lt;br /&gt;<br /> *M-Box riboswitch<br /> **[[3pdr]] – BsMBR + Mn<br /> *T-Box riboswitch<br /> **[[4lck]] – sTBR + tRNA-Gly + ribosomal protein YBXF – synthetic&lt;br /&gt;<br /> **[[4mgn]] – sTBR + tRNA-Gly &lt;br /&gt;<br /> **[[6ufm]] – TBR + tRNA – ''Mycolicibacterium smegmatis''&lt;br /&gt;<br /> **[[6ufg]], [[6ufh]] – MtTBR + tRNA &lt;br /&gt;<br /> **[[6pom]] – BsTBR + tRNA-Gly – Cryo EM&lt;br /&gt;<br /> *Tetrahydrofolate riboswitch<br /> **[[3suh]], [[3sux]] – EsTHFR + THF derivative – Eubacterium siraeum<br /> **[[3suy]] - EsTHFR + cytidine cyclic phosphate<br /> **[[4lvv]], [[4lvx]], [[4lvw]], [[4lvy]], [[4lvz]], [[4lw0]] – THFR + purine derivative – synthetic<br /> **[[3sd3]] – THFR (mutant) + pteridine derivative – synthetic <br /> **[[1qa4]], [[1qa5]] – NEF anchor domain – NMR<br /> **[[7kd1]] – SmTHFR – Streptococcus mutans&lt;br /&gt;<br /> **[[6q57]] – SmTHFR + pterin derivative &lt;br /&gt;<br /> **[[7wia]], [[7wib]] – MlTHFR – ''Mesorhizobium loti'' &lt;br /&gt;<br /> **[[7wie]] – MlTHFR + 7DG&lt;br /&gt;<br /> **[[7wii]] – MlTHFR + NPR&lt;br /&gt;<br /> **[[7wif]] – MlTHFR + H4B&lt;br /&gt;&lt;br&gt; &lt;br&gt;Fluoride riboswitch<br /> * [[3vrs]] – TpFR + Mn + K + F – ''Thermotoga petrophila''&lt;br /&gt;<br /> * [[4en5]] – TpFR + Mg + Tl + F &lt;br /&gt;<br /> * [[4enc]] – TpFR + Mg + K + F &lt;br /&gt;<br /> * [[4ena]] – TpFR + Mg + Cs + GTP + F &lt;br /&gt;<br /> * [[4enb]] – TpFR + Mg + Ir + K + GTP + F &lt;br /&gt;<br /> *Manganese riboswitch<br /> **[[6n2v]] – MnR + Mn – ''Xanthomonas oryzae''&lt;br /&gt;<br /> *Cobalamine riboswitch<br /> * [[4frg]], [[4frn]], [[4gma]], [[4gxy]] – CoR + aptamer domain – Marine metagenome&lt;br /&gt;<br /> **[[6vmy]], [[8fw4]] – BsCoR &lt;br /&gt;<br /> **[[8sa2]], [[8sa3]], [[8sa4]], [[8sa5]], [[8sa6]] – BsCoR – Cryo EM&lt;br /&gt;<br /> *YdaO riboswitch<br /> **[[6n5k]], [[6n5n]], [[6n5o]], [[6n5p]], [[6n5q]], [[6n5s]], [[6n5t]], [[6wtl]], [[6wtr]] – hYdaO/mRNA &lt;br /&gt;<br /> * yybp-ykoy riboswitch<br /> **[[4y1i]] – LlYYR + Mn – ''Lactobacillus lactis''&lt;br /&gt;<br /> **[[4y1j]] – LlYYR (mutant) + Mn&lt;br /&gt;<br /> **[[6cb3]], [[6cc1]], [[6cc3]] – LlYYR + GTP&lt;br /&gt;<br /> **[[4y1m]] – EcYYR &lt;br /&gt;<br /> * PRPP riboswitch<br /> **[[6dnr]] – SlPRPPR + GTP + cytidine phosphate – ''Syntrophothermus lipocalidus''&lt;br /&gt;<br /> **[[6dlq]], [[6dls]], [[6dlt]] – SlPRPPR + GTP + cytidine phosphate + PRP&lt;br /&gt;<br /> **[[6dlr]] – SlPRPPR + cytidine phosphate + PRP&lt;br /&gt;<br /> **[[6ck5]] – TmPRPPR + PRPP – ''Thermoanaerobacter mathranii''&lt;br /&gt;<br /> **[[6ck4]] – TmPRPPR (mutant) + G4P&lt;br /&gt;<br /> * PPGPP riboswitch<br /> **[[6dme]], [[6dmd]], [[6dmc]] – SaPPGPPR + GTP + cytidine phosphate + guanine tetraphosphate – ''Sulfobacillus acidophilus''&lt;br /&gt;<br /> *PFI riboswitch<br /> **[[4znp]] – PFIR + AICAR – synthetic&lt;br /&gt;<br /> *NiCo riboswitch<br /> **[[4rum]] – NiCoR + Co – synthetic&lt;br /&gt;<br /> *ZMP riboswitch<br /> **[[4xw7]], [[4xwf]] – ZMPR + AICAR – ''Actinomyces odontolyticus'' &lt;br /&gt;<br /> *ZTP riboswitch<br /> **[[6od9]] – FuZTP – ''Fusobacterium ulcerans''&lt;br /&gt;<br /> **[[6wzr]], [[6wzs]] – FuZTP + pyridine derivative&lt;br /&gt;<br /> **[[5btp]] – FuZTPR + AICAR &lt;br /&gt;<br /> *Deoxyguanosine riboswitch<br /> **[[3sk4]], [[3ski]], [[3skl]], [[3skt]], [[3skz]], [[3slm]], [[3slq]] – DgR + guanosine derivative&lt;br /&gt;<br /> *ThiM riboswitch<br /> **[[7tzr]], [[7tzs]], [[7tzt]], [[7tzu]] – EcThR + quinoxaline derivative &lt;br /&gt;<br /> **[[3k0j]] – EcThR + thiamine pyrophosphate <br /> <br /> }}<br /> <br /> [[Category: Topic Page]]</div>

Openfox https://proteopedia.org/index.php?title=Transcriptional_activator_3D_structures&diff=4433693 2026-03-29T10:38:45Z

<p>Openfox: Fix TreeAndMenu broken list structure</p> <hr /> <div>== 3D Structures of transcriptional activator==<br /> <br /> Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}} - For a general description of the protein see [[Transcriptional activator]]<br /> {{#tree:id=OrganizedByTopic|openlevels=0|<br /> *Gcn4 TA See [[Gcn4]]<br /> *Gcn5 TA<br /> **[[1e6i]] – yTA brododomain + histone H4 peptide - yeast&lt;br /&gt;<br /> **[[1ygh]] – yTA histone acetyltransferase domain &lt;br /&gt;<br /> *C-Myb TA; domains – DBD ; DBD repeat 1 38-89; repeat 2 90-141; repeat 3 142-193; transcription activation 291-315<br /> **[[1mse]], [[1msf]] – mTA DBD 90-193 + DNA – NMR - mouse&lt;br /&gt;<br /> **[[1mbe]], [[1mbf]] – mTA DBD repeat 1 + DNA - NMR&lt;br /&gt;<br /> **[[1mbg]], [[1mbh]] – mTA DBD repeat 2 + DNA - NMR&lt;br /&gt;<br /> **[[1mbj]], [[1mbk]] – mTA DBD repeat 3 + DNA - NMR&lt;br /&gt;<br /> **[[1h88]] – mTA DBD + DNA + CCAAT/enhancer binding protein β&lt;br /&gt;<br /> **[[1h89]] – mTA DBD + DNA + CAAT/enhancer binding protein β&lt;br /&gt;<br /> **[[1guu]] – mTA DBD repeat 1 &lt;br /&gt;<br /> **[[1gv2]] – mTA DBD repeat 2,3 &lt;br /&gt;<br /> **[[1gv5]] – mTA DBD repeat 2 &lt;br /&gt;<br /> **[[1gvd]] – mTA DBD repeat 2 (mutant) &lt;br /&gt;<br /> **[[1idy]], [[1idz]] – mTA DBD repeat 3 (mutant) - NMR&lt;br /&gt;<br /> **[[1sb0]], [[2agh]] – mTA transcription activation domain + CREB-binding protein - NMR&lt;br /&gt;<br /> **[[6dmx]], [[6dnq]] – mTA transcription activation domain + CREB-binding protein p3ptide + Bzip factor &lt;br /&gt;<br /> *Psp operon TA<br /> **[[2bjw]] – EcTA AAA domain –'' Escherichia coli''&lt;br /&gt;<br /> **[[4qnr]] – EcTA AAA domain (mutant) + ATP&lt;br /&gt;<br /> **[[4qos]] – EcTA AAA domain (mutant) + ADP&lt;br /&gt;<br /> **[[2c98]] – EcTA AAA domain + ADP&lt;br /&gt;<br /> **[[2c99]] – EcTA AAA domain + AMPPNP&lt;br /&gt;<br /> **[[2vii]] – EcTA AAA domain + AMP + Mg&lt;br /&gt;<br /> **[[5nss]] – EcTA in RNA polymerase complex – Cryo EM&lt;br /&gt;<br /> *TenA TA<br /> **[[1tyh]], [[1yaf]] – BsTA – ''Bacillus subtilis''&lt;br /&gt;<br /> **[[2qzc]] – TA – ''Sulfolobus solfataricus''&lt;br /&gt;<br /> **[[3no6]] – TA – ''Staphylococcus epidermidis''&lt;br /&gt;<br /> **[[1yak]] – BsTA + pyrimidine derivative&lt;br /&gt;<br /> **[[2qcx]] – BsTA (mutant) + pyrimidine derivative&lt;br /&gt;<br /> **[[1udd]] – TA – ''Pyrococcus horikishii''&lt;br /&gt;<br /> *LasR TA or transcriptional regulator LasR<br /> **[[6mww]] – PaTA – ''Pseudomonas aeruginosa''&lt;br /&gt;<br /> **[[2uv0]] – PaTA LBD residues 1-173 &lt;br /&gt;<br /> **[[3ix3]], [[6mvn]], [[6mvm]] – PaTA LBD + oxo-dodecanoyl-homoserine lactone&lt;br /&gt;<br /> **[[3ix4]], [[3ix8]], [[3jpu]], [[6d6a]], [[6d6b]], [[6d6c]], [[6d6d]], **[[6d6p]], [[6d6l]], [[6d6m]], [[6d6o]], [[6d6n]] – PaTA LBD + benzoate derivative&lt;br /&gt;<br /> **[[6mwl]] – PaTA + oxothiolan derivative&lt;br /&gt;<br /> **[[6mwh]] – PaTA + acetamide derivative&lt;br /&gt;<br /> **[[4ng2]] – PaTA LBD + protein&lt;br /&gt;<br /> **[[6mwz]] – PaTA (mutant) + peptide&lt;br /&gt;<br /> **[[6v7w]], [[6v7x]] – PaTA + Aqs1&lt;br /&gt;<br /> *CadC TA<br /> **[[3ly7]], [[3lya]] – EcTA periplasmic domain 188-512&lt;br /&gt;<br /> **[[3ly8]], [[3ly9]] – EcTA periplasmic domain (mutant)&lt;br /&gt;<br /> **[[5ju7]] – EcTA DBD 2-107&lt;br /&gt;<br /> *Mal-Rpel TA<br /> **[[2v51]], [[2v52]] – mTA residues 16-41 + actin &lt;br /&gt;<br /> **[[2yje]], [[2yjf]] – mTA Rpel domain + actin &lt;br /&gt;<br /> *Brg1 TA<br /> **[[5ea1]] – hTA bromodomain 1418-1536 - human&lt;br /&gt;<br /> **[[3uvd]] – hTA bromodomain - NMR&lt;br /&gt;<br /> **[[2grc]], [[3uvd]], [[5dkd]], [[6zs2]] – hTA bromodomain + inhibitor&lt;br /&gt;<br /> **[[6hr2]] – hTA bromodomain + ElonginB + ElonginC + pVHL&lt;br /&gt;<br /> **[[2i8b]] – TA C terminal – Zaire ebolavirus&lt;br /&gt;<br /> **[[3v7o]] – TA C terminal – Reston ebolavirus&lt;br /&gt;<br /> *Flagelar TA<br /> **[[1g8e]] – EcTA FlhD&lt;br /&gt;<br /> **[[2avu]] – EcTA FlhC+FLHD&lt;br /&gt;<br /> **[[5hxg]] – StTA FlhD + STM1697 &lt;br /&gt;<br /> *Tipa TA<br /> **[[1ny9]] – SlTA antibiotic binding domain – ''Streptomyces lividans'' - NMR&lt;br /&gt;<br /> **[[2mbz]], [[2mc0]] - SlTA antibiotic binding domain + thiopeptide - NMR&lt;br /&gt;<br /> **[[1r8d]] – BsTA &lt;br /&gt;<br /> *Rfah TA<br /> **[[2oug]] – EcTA &lt;br /&gt;<br /> **[[2lcl]] – EcTA C terminal - NMR&lt;br /&gt;<br /> **[[5ond]] – EcTA + DNA &lt;br /&gt;<br /> *SoxR TA or redox-sensitive transcriptional activator<br /> **[[2zhh]] – EcTA &lt;br /&gt;<br /> **[[2zhg]] – EcTA + DNA&lt;br /&gt;<br /> **[[6tf4]] – VcTA C terminal - ''Vibrio cholera'' - NMR&lt;br /&gt;<br /> *GlxR TA<br /> **[[3r6s]] – CgTA +cAMP – ''Corynebacterium glutamicum'' &lt;br /&gt;<br /> **[[4byy]] – CgTA &lt;br /&gt;<br /> *OxyR TA or hydrogen peroxide-inducible genes activator<br /> **[[3t22]], [[3ho7]], [[3uki]] – TA regulatory domain – ''Porphyromonas gingivalis'' &lt;br /&gt;<br /> **[[7l4s]] – TA regulatory domain – ''Shewnella oneidensis''&lt;br /&gt;<br /> **[[4y0m]] – PaTA regulatory domain &lt;br /&gt;<br /> **[[4x6g]], [[4xws]] – PaTA regulatory domain (mutant)&lt;br /&gt;<br /> **[[1i69]], [[1i6a]] – EcTA regulatory domain (mutant)&lt;br /&gt;<br /> **[[6g1d]] – CgTA regulatory domain (mutant)&lt;br /&gt;<br /> **[[6g1b]], [[6g4r]] – CgTA regulatory domain + H2O2&lt;br /&gt;<br /> **[[5x0v]] – VvTA - ''Vibrio vulnificus''&lt;br /&gt;<br /> **[[5b70]], [[5b7d]], [[5b7h]], [[5x0q]] – VvTA (mutant) &lt;br /&gt;<br /> **[[3jv9]] – NmTA – ''Neisseria meningitidis'' &lt;br /&gt;<br /> *PlcR TA<br /> **[[4fsc]] – BtTA - ''Bacillus thuringiensis'' &lt;br /&gt;<br /> **[[2qfc]] – BtTA + PapR peptide &lt;br /&gt;<br /> **[[3u3w]] – BtTA + DNA + PapR peptide &lt;br /&gt;<br /> *VirB TA or virulence regulon transcriptional activator VirB<br /> **[[3vwb]], [[3w2a]], [[3w3c]] – TA core domain + DNA – ''Shigella flexneri''&lt;br /&gt;<br /> *MafA TA<br /> **[[4eot]] – hTA DBD&lt;br /&gt;<br /> *CysB TA or Cys regulon transcriptional activator CysB<br /> **[[4gwo]], [[4gxa]], [[4lon]], [[4lp2]] – StTA C terminal – ''Salmonella typhimurium''&lt;br /&gt;<br /> **[[4lq2]], [[4lq5]], [[4m4g]] – StTA C terminal + acetylserine&lt;br /&gt;<br /> **[[1al3]] – TA cofactor binding domain – ''Klebsiella aerogenes''&lt;br /&gt;<br /> **[[5z50]] – PaTA regulatory domain &lt;br /&gt;<br /> **[[5z4y]], [[5z4z]] – PaTA NTD domain &lt;br /&gt;<br /> *HlyU TA<br /> **[[4k2e]], [[4ooi]] – VcTA &lt;br /&gt;<br /> **[[3jth]] – VvTA &lt;br /&gt;<br /> **[[5znx]] – VvTA + inhibitor &lt;br /&gt;<br /> *ToxR TA<br /> **[[6uue]], [[6utc]] – VvTA &lt;br /&gt;<br /> **[[7nmb]], [[7nn6]] – VcTA - NMR&lt;br /&gt;<br /> **[[8b4b]], [[8b4c]], [[8b4d]], [[8b4e]] – VcTA + DNA&lt;br /&gt;<br /> **[[8alo]] – VcTA + ToxS&lt;br /&gt;<br /> *LysR TA<br /> **[[5x0o]] – VvTA &lt;br /&gt;<br /> **[[5x0n]] – VvTA (mutant)&lt;br /&gt;<br /> **[[3t1b]], [[3szp]] – VcTA &lt;br /&gt;<br /> **[[6tpr]], [[6z07]], [[6z17]], [[6z5k]], [[6yz3]], [[7o2t]], [[7o2u]] – PaTA + antagonist&lt;br /&gt;<br /> **[[6yiz]], [[7nbw]] – PaTA + agonist&lt;br /&gt;<br /> **[[5z7h]] – SaTA &lt;br /&gt;<br /> **[[4pzj]] – TA – ''Eggerthella lenta''&lt;br /&gt;<br /> **[[3hhf]], [[3hhg]], [[4ab5]] – NmTA &lt;br /&gt;<br /> **[[3fzj]] – TA – ''Comamonas testosteroni''&lt;br /&gt;<br /> **[[1ixc]], [[1iz1]] – CnTA – ''Cupriavidus necator''&lt;br /&gt;<br /> **[[5xxp]], [[7d98]] – CnTA + DNA&lt;br /&gt;<br /> **[[1uth]], [[2y7r]], [[5ae4]] – TA – ''Burkholderia cepacia''&lt;br /&gt;<br /> **[[7trv]], [[7trw]] – TA LBD – ''Yersinia pestis''&lt;br /&gt;<br /> **[[7erp]], [[7erq]] – CsTA regulatory domain – ''Cronobacter sakazakii''&lt;br /&gt;<br /> **[[7fdf]] – CsTA regulatory domain (mutant) &lt;br /&gt;<br /> *Aft2 TA<br /> **[[4lmg]] – yTA + DNA&lt;br /&gt;<br /> *Mga TA<br /> **[[5way]] – SpTA – ''Streptococcus pneumoniae''&lt;br /&gt;<br /> *Spt7 TA<br /> **[[6t9k]], [[6t9i]] – yTA in SAGA – Cryo EM&lt;br /&gt;<br /> *Quorum-sensing TA or TraR<br /> **[[5l07]] – YeTA – ''Yersinia enterocolitica''&lt;br /&gt;<br /> **[[5l09]] – YeTA + THF derivative&lt;br /&gt;<br /> **[[1l3l]] – AtTA + pheromone + DNA – ''Agrobacterium tumefaciens'' &lt;br /&gt;<br /> **[[1h0m]] – AtTA + auto-inducer + DNA &lt;br /&gt;<br /> *MexT TA<br /> **[[6l33]] – PaTA regulatory domain&lt;br /&gt;<br /> *ComR TA<br /> **[[5juf]], [[6qer]] – StTA – ''Streptococcus thermophilus''&lt;br /&gt;<br /> **[[5jub]] – StTA + DNA&lt;br /&gt;<br /> **[[5fd4]] – TA – ''Streptococcus suis''&lt;br /&gt;<br /> **[[7n10]], [[7n1n]] – SmTA DBD + Prx – ''Streptococcus mutans''&lt;br /&gt;<br /> **[[6hu8]] – SvTA – ''Streptococcus vestibularis''&lt;br /&gt;<br /> **[[6hua]] – SvTA + peptide&lt;br /&gt;<br /> *FasR TA<br /> **[[6o6p]] – MtTA + DNA – ''Mycobacterium tuberculosis''&lt;br /&gt;<br /> **[[6o6o]] – MtTA + myristic acid&lt;br /&gt;<br /> **[[6o6n]] – MtTA + arachinoyl-CoA&lt;br /&gt;<br /> *ModE TA<br /> **[[1o7l]], [[1h9s]] – EcTA + Mo &lt;br /&gt;<br /> **[[1b9m]], [[1b9n]], [[1h9r]] – EcTA + Ni &lt;br /&gt;<br /> *TetR family TA<br /> **[[1z77]], [[2id6]], [[2iek]], [[1zkg]], [[4i76]], [[3ih2]], [[3ih3]], [[3ih4]] – TmTA – ''Thermotoga maritima''&lt;br /&gt;<br /> **[[4i6z]] – TmTA + DNA&lt;br /&gt;<br /> **[[1zk8]], [[2fq4]], [[4me9]] – BcTA – ''Bacillus cereus''&lt;br /&gt;<br /> **[[3cwr]] – TA – ''Rhodspirillum rubrum''&lt;br /&gt;<br /> **[[1z0x]] – EfTA – ''Enterococcus faecalis''&lt;br /&gt;<br /> **[[3c2b]] – AfTA – ''Agrobacterium fabrum''&lt;br /&gt;<br /> **[[2o7t]] – CgTA &lt;br /&gt;<br /> **[[2g7s]] – AtTA &lt;br /&gt;<br /> **[[3gzi]] – TA – ''Shewanella loihica''&lt;br /&gt;<br /> **[[2qib]], [[2zcx]], [[7ky1]] – ScTA – ''Streptomyces coelicolor''&lt;br /&gt;<br /> **[[2hyt]] – TA – ''Pectobacterium atrosepticum''&lt;br /&gt;<br /> **[[3cdl]] – PsTA – ''Pseudomonas syringae''&lt;br /&gt;<br /> **[[3kkc]] – SaTA – ''Streptococcus agalactiae''&lt;br /&gt;<br /> **[[3nnr]] – TA – ''Marinobacter aquaeolei''&lt;br /&gt;<br /> **[[3on4]] – TA – ''Legionella pneumophila''&lt;br /&gt;<br /> **[[3f1b]] – RjTA – ''Rhodococcus jostii''&lt;br /&gt;<br /> **[[3eup]] – TA – ''Cytophaga hutchinsoni''i&lt;br /&gt;<br /> **[[3egq]] – TA – ''Archaeoglobus fulgidus''&lt;br /&gt;<br /> **[[4hku]] – LmTA – Listeria monocytogenes&lt;br /&gt;<br /> **[[3nrg]], [[3qbm]] – TA – ''Chlotoflexus aurantiacus''&lt;br /&gt;<br /> **[[6nsr]] – PaTA (mutant) + DNA&lt;br /&gt;<br /> **[[4jkz]] – MsTA – ''Mycobacterium smegmatis''&lt;br /&gt;<br /> **[[6el2]] – SacTA – ''Sulfolobus acidocaldarius''&lt;br /&gt;<br /> **[[6en8]] – SacTA + DNA&lt;br /&gt;<br /> *TetR/AcrR family TA<br /> **[[2rae]] – RjTA &lt;br /&gt;<br /> **[[3lhq]] – StTA &lt;br /&gt;<br /> **[[3b81]] – CpTA – ''Clostridium acetobutylicum''&lt;br /&gt;<br /> **[[3dcf]] – TA – ''Thermobifida fusca''&lt;br /&gt;<br /> **[[3mvp]] – SmTA &lt;br /&gt;<br /> **[[5d18]], [[5d19]], [[6a4l]], [[6a4w]] – MtTA &lt;br /&gt;<br /> **[[2eh3]] – TA – ''Aquifex aeolicus''&lt;br /&gt;<br /> **[[3vuq]] – TtTA – ''Thermus thermophilus''&lt;br /&gt;<br /> **[[7eqe]] – SgTA – ''Streptococcus griseus''&lt;br /&gt;<br /> **[[7eqf]] – SgTA + ligand&lt;br /&gt;<br /> **[[5gp9]], [[5gpa]] – BhTA – ''Bacillus halodurans''&lt;br /&gt;<br /> **[[5gpc]] – BhTA + DNA &lt;br /&gt;<br /> **[[6g87]] – BdTA – ''Bradyrhizobium diazoefficiens''&lt;br /&gt;<br /> **[[6g8h]] – BdTA + naringenin &lt;br /&gt;<br /> **[[6g8g]] – BdTA + genistein &lt;br /&gt;<br /> *GntR family TA<br /> **[[3l5z]] – BcTA &lt;br /&gt;<br /> **[[3ddv]] – EfTA &lt;br /&gt;<br /> **[[3fms]], [[3sxy]] – TmTA &lt;br /&gt;<br /> **[[3c7j]] – PsTA &lt;br /&gt;<br /> **[[2di3]], [[2p19]] – CgTA &lt;br /&gt;<br /> **[[3tqn]] – TA –'' Coxiella burnetii''&lt;br /&gt;<br /> **[[6za0]], [[6za3]], [[7za7]] – AfTA &lt;br /&gt;<br /> **[[6z74]], [[6zab]] – AfTA + DNA&lt;br /&gt;<br /> **[[7u5q]] – TA – ''Brucella melitensis''&lt;br /&gt;<br /> **[[6sbs]] – SacTA &lt;br /&gt;<br /> **[[3h5o]] – TA – ''Chromobacterium violaceum'' &lt;br /&gt;<br /> **[[6az6]], [[7b5t]], [[7b5y]], [[7b5w]] – SaTA &lt;br /&gt;<br /> **[[7b5u]] – SaTA + diAMP &lt;br /&gt;<br /> **[[7oz3]] – SaTA + DNA – Cryo EM&lt;br /&gt;<br /> **[[4r1h]] – LmTA &lt;br /&gt;<br /> **[[3ihu]] – TA – ''Ralstonia eutropha'' &lt;br /&gt;<br /> **[[3lhe]] – TA – ''Bacillus anthracis'' &lt;br /&gt;<br /> **[[3f8m]] – MsTA &lt;br /&gt;<br /> *MarR family TA or multiple antibiotic resistance protein<br /> **[[3boq]], [[3cjn]], [[3e6m]] – RpTA - ''Ruegeria pomeryi''&lt;br /&gt;<br /> **[[3s2w]] – TA – ''Methanosarcina mazei'' &lt;br /&gt;<br /> **[[3bpv]] – TA – ''Methanobacterium thermoautotrophicum'' &lt;br /&gt;<br /> **[[2fbk]] – DrTA –'' Deinococcus radiodurans''&lt;br /&gt;<br /> **[[5dd8]] – DrTA (mutant) &lt;br /&gt;<br /> **[[2fa5]] – TA – ''Xanthomonas campestris''&lt;br /&gt;<br /> **[[3g3z]], [[5aiq]] – NmTA &lt;br /&gt;<br /> **[[5aip]] – NmTA + hydroxyphenylacetate &lt;br /&gt;<br /> **[[5e1w]] – DmTA – ''Dihalococcoides mccartyi''&lt;br /&gt;<br /> **[[5e1z]], [[5e1x]], [[5e20]] – DmTA + phenol derivative &lt;br /&gt;<br /> **[[6c28]] – RpTA + coumaroyl-CoA – ''Rhodopseudomonas palustris'' &lt;br /&gt;<br /> **[[3fm5]] – RjTA &lt;br /&gt;<br /> **[[1z91]] – BsTA &lt;br /&gt;<br /> **[[4b8x]] – ScTA &lt;br /&gt;<br /> **[[4yif]] – MtTA &lt;br /&gt;<br /> **[[3vb2]], [[3voe]], [[4jba]] – EcTA &lt;br /&gt;<br /> **[[3vod]] – EcTA (mutant)&lt;br /&gt;<br /> **[[5h3r]] – EcTA (mutant) + DNA&lt;br /&gt;<br /> **[[5eri]] – CdTA – ''Clostridium difficile''&lt;br /&gt;<br /> **[[7dvn]] – TA + effector –'' Paenisporosarcina''&lt;br /&gt;<br /> **[[3u2r]] – TA – ''Planctopirus limnophilus''&lt;br /&gt;<br /> **[[2rdp]] – TA – ''Bacillus stearothermophilus''&lt;br /&gt;<br /> *MerR family TA or mercuric resistance operon regulatory protein<br /> **[[3hh0]] – BcTA &lt;br /&gt;<br /> **[[3gpv]] – BtTA &lt;br /&gt;<br /> **[[4ua1]], [[4ua2]] – TA – ''Bacillus megaterium''&lt;br /&gt;<br /> **[[5crl]] – PaTA &lt;br /&gt;<br /> **[[5gpe]] – TA – ''Cupriavidus metallidurans''&lt;br /&gt;<br /> **[[3cnb]] – TA – ''Colwellia psychrerythraea'' &lt;br /&gt;<br /> **[[6d90]] – HiTA – ''Haemophilia influenzae''&lt;br /&gt;<br /> **[[5d8c]] – HiTA + DNA &lt;br /&gt;<br /> **[[6xl6]], [[6xla]], [[6xlk]] – EcTA + DNA – Cryo EM&lt;br /&gt;<br /> **[[6xl5]], [[6xl9]], [[6xlj]] – EcTA in RNP complex – Cryo EM&lt;br /&gt;<br /> *AsnC family TA<br /> **[[3i4p]] – AfTA &lt;br /&gt;<br /> **[[2cg4]] – EcTA &lt;br /&gt;<br /> *AraC family TA or arabinose operon regulatory protein<br /> **[[3gra]] – PpTA – ''Pseudomonas putida''&lt;br /&gt;<br /> **[[3cu5]] – TA – ''Lacnoclostridium phytofermentans''&lt;br /&gt;<br /> **[[5chh]] – PaTA &lt;br /&gt;<br /> **[[2ara]] – EcTA &lt;br /&gt;<br /> **[[1xja]] – EcTA dimerization domain (mutant)&lt;br /&gt;<br /> **[[2k9s]] – EcTA DBD - NMR&lt;br /&gt;<br /> **[[2arc]] – EcTA + arabinose&lt;br /&gt;<br /> **[[2aac]] – EcTA + fucose&lt;br /&gt;<br /> *LacI family TA<br /> **[[3kjx]], [[3e3m]] – RpTA &lt;br /&gt;<br /> **[[3jy6]] – TA - ''Lactobacillus brevis'' &lt;br /&gt;<br /> **[[6chk]] – LcTA - ''Lactobacillus casei'' &lt;br /&gt;<br /> **[[4rk5]], [[4rk4]] – LcTA + sugar &lt;br /&gt;<br /> **[[4rk0]], [[4rk1]] – EfTA + ribose&lt;br /&gt;<br /> **[[3h5t]] – CgTA &lt;br /&gt;<br /> **[[3kke]] – MsTA &lt;br /&gt;<br /> **[[4rkq]], [[4rkr]] – TA - ''Arthrobacter''&lt;br /&gt;<br /> *PadR family TA<br /> **[[5zhv]], [[5zi8]], [[5zhc]] – MtTA &lt;br /&gt;<br /> **[[5zqh]] – SpTA &lt;br /&gt;<br /> **[[5x12]], [[7cbv]] – BsTA &lt;br /&gt;<br /> **[[5x13]], [[5y8t]] – BsTA + coumaric acid&lt;br /&gt;<br /> **[[5x14]] – BsTA + ferulic acid&lt;br /&gt;<br /> **[[6abq]], [[6abt]] – LmTA &lt;br /&gt;<br /> **[[5dym]] – CdTA &lt;br /&gt;<br /> *TrmB TA or tRNA (guanine-N(7)-) methyltransferase<br /> **[[2f5t]] – TA – ''Thermococcus litoralis''&lt;br /&gt;<br /> **[[3qph]] – PfTA + sucrose – ''Pyrococcus furiosus''&lt;br /&gt;<br /> *IclR TA<br /> **[[1mkm]] – TmTA &lt;br /&gt;<br /> **[[2o99]], [[2o9a]] – EcTA C-terminal &lt;br /&gt;<br /> **[[1td5]] – EcTA LBD &lt;br /&gt;<br /> **[[7cuo]] – TA + hydroxybenzoate – ''Microbacterium hydrocarbonoxydans &lt;br /&gt;&lt;br&gt;''<br /> *BgaR TA<br /> **[[6nwo]] – CpTA – ''Clostridium perfringens''&lt;br /&gt;<br /> **[[6nx3]], [[6nwj]], [[6nwm]], [[6nwh]] – CpTA + pyranose derivative&lt;br /&gt;<br /> *SlyA TA<br /> **[[1lj9]] – EfTA &lt;br /&gt;<br /> **[[3qpt]] – StTA &lt;br /&gt;<br /> **[[3q5f]] – StTA + DNA &lt;br /&gt;<br /> **[[4aih]] – YpTA – ''Yersinia pseudotuberculosis''&lt;br /&gt;<br /> **[[4aij]], [[4aik]] – YpTA + DNA &lt;br /&gt;<br /> *CouR TA<br /> **[[5cyv]], [[6c28]] – RjTA + coumaroyl-CoA –'' Rhodococcus jostii''&lt;br /&gt;<br /> **[[6c9t]] – RpTA &lt;br /&gt;<br /> **[[6c2s]] – RpTA + DNA &lt;br /&gt;<br /> *CueR TA<br /> **[[1q07]], [[1q06]], [[1q05]] – EcTA &lt;br /&gt;<br /> *LuxR TA<br /> **[[6wae]] – VvTA &lt;br /&gt;<br /> **[[6wai]], [[6wah]], [[6wag]], [[6waf]] – VvTA (mutant)&lt;br /&gt;<br /> *LuxT TA<br /> **[[3b4s]], [[3ljl]] – VpTA &lt;br /&gt;<br /> *ClgR TA or Clp gene regulator<br /> **[[5woq]] – MsTA &lt;br /&gt;<br /> **[[3f51]], [[3f52]] – CgTA &lt;br /&gt;<br /> *LmrR TA<br /> **[[3f8b]], [[6i8n]] – LlTA – ''Lactococcus lactis''&lt;br /&gt;<br /> **[[3f8c]], [[3f8f]] – LlTA + drug&lt;br /&gt;<br /> **[[6vwe]], [[6do0]] – LlTA + Rh complex&lt;br /&gt;<br /> **[[6r1l]] – LlTA + Cu + phenanthroline&lt;br /&gt;<br /> **[[4zzd]] – LlTA + riboflavine&lt;br /&gt;<br /> **[[6fuu]] – LlTA + heme&lt;br /&gt;<br /> *MvfR TA<br /> **[[4jvc]], [[6z17]] – PaTA &lt;br /&gt;<br /> **[[4jvd]], [[4jvi]], [[6q7u]], [[6q7v]], [[6tpr]], [[6yiz]], [[6yz3]], [[6z07]], **[[6z17]], [[6z5k]], [[7nbw]], [[7o2t]], [[7o2u]] – PaTA + inhibitor&lt;br /&gt;<br /> **[[6b8a]], [[6q7w]] – PaTA LBD 94-295 + inhibitor&lt;br /&gt;<br /> *HdfR TA<br /> **[[6wn5]] – TA – ''Klebsiella pneumoniae''&lt;br /&gt;<br /> *McbR TA<br /> **[[4p9f]] – EcTA &lt;br /&gt;<br /> **[[4ab5]] – MnTA &lt;br /&gt;<br /> **[[4ab6]] – MnTA (mutant)&lt;br /&gt;<br /> *MetR TA<br /> **[[5fo5]] – EcTA DBD&lt;br /&gt;<br /> *YvhJ TA<br /> **[[3nxh]] – BsTA &lt;br /&gt;<br /> *CgmR TA<br /> **[[2yve]], [[2zoy]] – CgTA &lt;br /&gt;<br /> **[[2zoz]] – CgTA + ethidium&lt;br /&gt;<br /> **[[2yvh]] – CgTA + DNA&lt;br /&gt;<br /> *AraR TA or arabinose metabolism transcriptional repressor<br /> **[[5bs6]], [[5dd4]] – BtTA – ''Bacterioides thetaiotaomicron''&lt;br /&gt;<br /> **[[3tb6]] – BtTA effector-binding domain 71-362 + arabinose&lt;br /&gt;<br /> **[[5ddg]] – BtTA + DNA&lt;br /&gt;<br /> **[[5deq]] – BtTA 1-225 + arabinose&lt;br /&gt;<br /> **[[4egy]], [[4egz]], [[4h0e]], [[5d4r]], [[5d4s]] – BsTA DBD 1-68 + DNA&lt;br /&gt;<br /> *CarH TA or light-dependent transcriptional regulator<br /> **[[5c8a]], [[5c8d]], [[5c8e]], [[5c8f]] – TtTA + cobalamin derivative&lt;br /&gt;<br /> *ZitR TA or zinc transport transcriptional regulator<br /> **[[5yhx]] – LlTA &lt;br /&gt;<br /> **[[5yhy]], [[5yhz]], [[5yi0]], [[5yi1]], [[6fi9]] – LlTA (mutant)&lt;br /&gt;<br /> **[[5yi2]] – LlTA + DNA&lt;br /&gt;<br /> **[[5yi3]] – LlTA (mutant) + DNA&lt;br /&gt;<br /> *LsrR TA<br /> **[[4l4y]] – EcTA &lt;br /&gt;<br /> **[[4l4z]], [[4l50]], [[4l51]], [[4l5i]], [[4l5j]] – EcTA + ligand&lt;br /&gt;<br /> *TA II<br /> **[[8igr]] – EcTA in transcription activation complex – Cryo EM&lt;br /&gt;<br /> *TA RAMA<br /> **[[7bef]], [[7beg]] – EcTA in transcription activation complex – Cryo EM&lt;br /&gt;<br /> *PrfA TA or listeriolysin positive regulatory factor A<br /> **[[1omi]], [[2beo]] – LmTA &lt;br /&gt;<br /> **[[2bgc]], [[6qvy]], [[6qvz]], [[6qw1]], [[6qw2]] – LmTA (mutant) &lt;br /&gt;<br /> **[[5lej]], [[5x6d]] – LmTA + DNA&lt;br /&gt;<br /> **[[5lek]], [[6qwf]], [[6qwh]], [[6qwk]], [[6qwm]] – LmTA (mutant) + DNA &lt;br /&gt;<br /> **[[5f1r]], [[6eut]], [[6euu]], [[6euz]], [[6ev0]], [[6exk]], [[6exl]], [[6exm]], [[6t5i]] – LmTA + inhibitor&lt;br /&gt;<br /> **[[5lrs]], [[5x6e]] – LmTA + DNA + glutathione&lt;br /&gt;<br /> **[[5lrr]] – LmTA + glutathione&lt;br /&gt;<br /> **[[6hck]] – LmTA + peptide&lt;br /&gt;<br /> *HTH-type TA or helix-turn-helix-type<br /> **[[2uxu]] – PpTA TtgR + naringenin&lt;br /&gt;<br /> **[[2uxh]] – PpTA TtgR + quercetin&lt;br /&gt;<br /> **[[2uxi]] – PpTA TtgR + phloretin&lt;br /&gt;<br /> **[[6ugl]], [[6kju]] – VcTA + pyrazine derivative&lt;''br /&gt;<br /> **[[2bv6]] – SaTA MgrA –'' Staphylococcus aureus&lt;br /&gt;<br /> **[[5hs5]], [[5ywj]], [[6k8e]] – SaTA SarX&lt;br /&gt;<br /> **[[3hrm]], [[3hse]] – SaTA SarZ &lt;br /&gt;<br /> **[[6r1p]] – MtTA EthR &lt;br /&gt;<br /> **[[1ysq]] – EcTA YiaJ &lt;br /&gt;<br /> **[[2qop]], [[3bcg]] – EcTA AcrR&lt;br /&gt;<br /> **[[6ldi]], [[6xh7]], [[6xh8]], [[7c17]] – EcTA CueR in transcription activation complex – Cryo EM &lt;br /&gt;<br /> **[[4wls]], [[4wlw]] – EcTA CueR + DNA&lt;br /&gt;<br /> **[[4x1e]] – EcTA RutR&lt;br /&gt;<br /> **[[4xk4]], [[4jyk]] – EcTA RutR + uracil derivative&lt;br /&gt;<br /> **[[2hxr]] – EcTA CynR LBD &lt;br /&gt;<br /> **[[3hfu]] – EcTA CynR LBD + N3&lt;br /&gt;<br /> **[[8bob]] – EcTA MalT + MalY – Cryo EM &lt;br /&gt;<br /> **[[2gfn]] – RjTA Rha1 &lt;br /&gt;<br /> **[[1i1g]] – PfTA LrpA &lt;br /&gt;<br /> **[[7cla]] – TA SkgA – ''Caulobacter vibrioides''&lt;br /&gt;<br /> **[[7bzd]] – BsTA HxlR &lt;br /&gt;<br /> **[[7bze]] – BsTA HxlR (mutant)&lt;br /&gt;<br /> **[[7bzg]] – BsTA HxlR + DNA&lt;br /&gt;<br /> **[[7amn]], [[7amt]] – TA LuxR + DNA – ''Vibrio alginolyticus''&lt;br /&gt;<br /> **[[2dtz]], [[2hq5]] – SaTA QacR (mutant)&lt;br /&gt;<br /> **[[3bqz]], [[3br0]], [[3btc]], [[3btl]] – SaTA QacR (mutant) + malachite green&lt;br /&gt;<br /> **[[3br1]], [[3br2]], [[3bt9]], [[3btj]] – SaTA QacR (mutant) + dequalinium&lt;br /&gt;<br /> **[[3bti]] – SaTA QacR (mutant) + berberine&lt;br /&gt;<br /> **[[1qvu]],[[3br3]], [[3pm1]] – SaTA QacR (mutant) + ethidium&lt;br /&gt;<br /> **[[1rkw]], [[1rpw]] – SaTA QacR (mutant) + pentamadine&lt;br /&gt;<br /> **[[1qvt]] – SaTA QacR (mutant) + proflavine&lt;br /&gt;<br /> **[[3br5]], [[3br6]] – SaTA QacR (mutant) + rhodamine&lt;br /&gt;<br /> **[[2gby]] – SaTA QacR (mutant) + berenil&lt;br /&gt;<br /> **[[2g0e]] – SaTA QacR (mutant) + drug&lt;br /&gt;<br /> **[[3k1n]] – AbTA BenM – Acinetobacter baylyi&lt;br /&gt;<br /> **[[3k1p]] – AbTA BenM (mutant)&lt;br /&gt;<br /> **[[2f6g]], [[2f6p]], [[2f97]] – AbTA BenM effector-binding domain 81-304&lt;br /&gt;<br /> **[[3m1e]] – AbTA BenM DBD 1-87&lt;br /&gt;<br /> **[[4ihs]], [[4iht]] – AbTA BenM effector-binding domain + DNA &lt;br /&gt;<br /> **[[2f78]], [[2f7a]], [[2f7c]] – AbTA BenM effector-binding domain + effector &lt;br /&gt;<br /> **[[2h9b]] – EfTA BenM (mutant)&lt;br /&gt;<br /> **[[2f7b]], [[2h98]] – AbTA CatM effector-binding domain &lt;br /&gt;<br /> **[[3glb]] – AbTA CatM effector-binding domain (mutant)&lt;br /&gt;<br /> **[[2f7c]] – AbTA CatM effector-binding domain + muconate&lt;br /&gt;<br /> **[[2cfx]] – BsTA LrpC&lt;br /&gt;<br /> **[[2gqq]] – EcTA LrpC&lt;br /&gt;<br /> **[[6d2s]], [[6cyj]], [[6cz6]], [[6cyy]] – MtTA PrpR&lt;br /&gt;<br /> **[[2pju]] – EcTA PrpR&lt;br /&gt;<br /> **[[5t4k]], [[5t4j]], [[5t4l]], [[5x03]] – BsTA GabR EBO domain + pyridine derivative&lt;br /&gt;<br /> **[[4mgr]], [[4nob]], [[4tv7]] – BsTA GabR &lt;br /&gt;<br /> **[[6uxz]] – BsTA GabR + agonist&lt;br /&gt;<br /> **[[5u9e]], [[5u93]] – TA RhaR regulatory domain – ''Bacteria latreille''&lt;br /&gt;<br /> **[[5z49]] – TA CmpR effector-binding domain + ribulose bisphosphate – ''Synechococcus elongatus''&lt;br /&gt;<br /> **[[3kos]] – CfTA AmpR effector binding domain – ''Citrobacter freundii''&lt;br /&gt;<br /> **[[3kot]] – CfTA AmpR effector binding domain (mutant)&lt;br /&gt;<br /> **[[4wkm]] – CfTA AmpR effector binding domain + peptide&lt;br /&gt;<br /> **[[5mmh]] – PaTA AmpR effector binding domain &lt;br /&gt;<br /> <br /> }}<br /> <br /> [[Category:Topic Page]]</div>

Openfox https://proteopedia.org/index.php?title=Transcription_initiation_factors_3D_structures&diff=4433692 2026-03-29T10:38:45Z

<p>Openfox: Fix TreeAndMenu broken list structure</p> <hr /> <div>==3D structures of transcription initiation factors==<br /> <br /> Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}} - For a general description of the protein see [[Transcription initiation factor]]<br /> {{#tree:id=OrganizedByTopic|openlevels=0|<br /> *TFIIA<br /> **[[5m4s]] – hTFIIA – human&lt;br /&gt;<br /> **[[1nvp]] – hTFIIA + TBP + DNA &lt;br /&gt;<br /> **[[6mzm]] – hTFIIA+TFIID + TBP + DNA – Cryo EM&lt;br /&gt;<br /> **[[1nh2]], [[1rm1]], [[1ytf]] – yTFIIA + TBP + DNA – yeast&lt;br /&gt;<br /> **[[7oh9]], [[7oha]] – yTFIIA in nucleosome complex - CryoEM&lt;br /&gt;<br /> **[[5fur]] – yTFIIA + yTFIIF + TBP + DNA - CryoEM&lt;br /&gt;<br /> *TFIIB<br /> **[[1tfb]] – hTFIIB – NMR&lt;br /&gt;<br /> **[[1dl6]] - hTFIIB N terminal – NMR&lt;br /&gt;<br /> **[[5wh1]] - hTFIIB C terminal &lt;br /&gt;<br /> **[[1rly]] - hTFIIB Zn ribbon domain + Zn – NMR&lt;br /&gt;<br /> **[[1ro4]] - hTFIIB Zn ribbon domain – NMR&lt;br /&gt;<br /> **[[1c9b]], [[1vol]]  – hTFIIB + TBP + DNA&lt;br /&gt;<br /> **[[1ais]], [[1d3u]] - TFIIB C terminal + TBP + DNA – ''Pyrococcus woesei''&lt;br /&gt;<br /> **[[1pft]] – PfTFIIB N terminal – ''Pyrococcus furiosus'' – NMR&lt;br /&gt;<br /> **[[5o9i]], [[5o9j]] - TFIIB – ''Methanocaldococcus jannaschii'' &lt;br /&gt;<br /> *TFIIA+TFIIB<br /> **[[6o9l]] – hTFIIA+TFIIB in RNA polymerase II – Cryo EM&lt;br /&gt;<br /> **[[7zwc]] – hTFIIA+TFIIB + SNAPc:TBP – Cryo EM&lt;br /&gt;<br /> *TFIIIB<br /> **[[5n9g]] – hTFIIIB + TBP + DNA&lt;br /&gt;<br /> **[[6f40]], [[6f41]], [[6f42]], [[6f44]], [[6cnb]], [[6cnc]], [[6cnd]], [[6cnf]], [[6eu0]] – yTFIIIB + RNA polymerase III – Cryo EM&lt;br /&gt;<br /> **[[7q5b]] – yTFIIIB in TY3 retrotransposon complex – Cryo EM&lt;br /&gt;<br /> *TFIID<br /> **[[1bh8]] – hTFIID&lt;br /&gt;<br /> **[[1eqf]], [[7k3o]] – hTFIID subunit 1&lt;br /&gt;<br /> **[[6fic]], [[7jjg]], [[7jjh]], [[7jsp]], [[7jtc]], [[7k03]], [[7k0d]], [[7k0u]], [[7k1p]], [[7k27]], [[7k42]], [[7k6f]], [[7l6x]], [[7lb0]], [[7lb1]], [[7lb2]], [[7lb3]], [[7n42]], [[7p4s]], [[7t2i]], [[7t36]] – hTFIID subunit 1 + inhibitor&lt;br /&gt;<br /> **[[3uv5]] – hTFIID subunit 1 bromodomain 1-2&lt;br /&gt;<br /> **[[3uv4]] – hTFIID subunit 1 bromodomain 2 1501-1635&lt;br /&gt;<br /> **[[5mg2]], [[6bqd]], [[6p38]], [[6p39]], [[6p3a]] – hTFIID subunit 1 bromodomain 2 + inhibitor &lt;br /&gt;<br /> **[[3aad]] – hTFIID subunit 1 bromodomain 1-2 + histone chaperone ASF1A&lt;br /&gt;<br /> **[[4yym]], [[4yyn]] – hTFIID subunit 1 bromodomain 2 + histone peptide&lt;br /&gt;<br /> **[[5i1q]], [[5i29]] – hTFIID subunit 1 bromodomain 2 + pyrrolopyridone&lt;br /&gt;<br /> **[[5c13]], [[5wxg]], [[5wxh]], [[5xmy]] – hTFIID subunit 3 PHD finger 853-915 + histone peptide&lt;br /&gt;<br /> **[[5eg2]] - hTFIID subunit 10 + SETD7 + SAH&lt;br /&gt;<br /> **[[4wv4]] - hTFIID subunits 8+10 &lt;br /&gt;<br /> **[[4grw]] - hTFIID subunits 1+7 &lt;br /&gt;<br /> **[[6f3t]] - hTFIID subunits 5+6+9 &lt;br /&gt;<br /> **[[6mzl]], [[7eg9]], [[7egb]], [[7egc]], [[7ege]], [[7ena]], [[7enc]] - hTFIID subunits 1-13 + TBP – Cryo EM&lt;br /&gt;<br /> **[[6mzd]], [[7egf]] - hTFIID subunits 1,3-6,9-13 + TBP – Cryo EM&lt;br /&gt;<br /> **[[6mzc]], [[7egg]] - hTFIID subunits 2,4-6,8-12 – Cryo EM&lt;br /&gt;<br /> **[[7egh]] - hTFIID subunits 1,2,6-8 + DNA – Cryo EM&lt;br /&gt;<br /> **[[7ktr]], [[7kts]], [[8h7g]] - hTFIID in SAGA coactivator complex – Cryo EM&lt;br /&gt;<br /> **[[1bh9]] – hTFIID + PCMBS&lt;br /&gt;<br /> **[[6df4]], [[6df7]] – TFIID subunit 1 bromodomain 2 + inhibitor - rabbit&lt;br /&gt;<br /> **[[1tba]] – TFIID – ''Drosophila melanogaster'' - NMR&lt;br /&gt;<br /> **[[1qn3]], [[1qn4]], [[1qn5]], [[1qn6]], [[1qn7]], [[1qn8]], [[1qn9]], [[1qna]], [[1qnb]], [[1qnc]], [[1qne]] – AtTFIID + DNA &lt;br&gt;''Arabidopsis thaliana''&lt;br /&gt;<br /> **[[7ac1]] - AtTFIID subunit 4 RST domain - NMR&lt;br /&gt;<br /> **[[4oy2]] - yTFIID subunits 1+7 &lt;br /&gt;<br /> **[[6mip]] - yTFIID subunit 14 &lt;br /&gt;<br /> **[[6lqz]] - yTFIID subunit 14 + STH1EBMC - NMR&lt;br /&gt;<br /> **[[5d7e]], [[5iok]], [[6min]], [[6mio]], [[6miq]], [[7f4a]] – yTFIID subunit 14 YEATS domain 1-137 + histone peptide&lt;br /&gt;<br /> **[[7uhe]] – yTFIID subunit 14 ET domain 168-243 + C-terminal domain 1392-1403&lt;br /&gt;<br /> **[[6t9j]] - yTFIID subunit 12 + Spt20 + transcription-associated protein – Cryo EM &lt;br /&gt;<br /> **[[6t9i]], [[6t9k]] - yTFIID in SAGA complex – Cryo EM &lt;br /&gt;<br /> **[[6hqa]], [[6tb4]], [[6tbm]] - TFIID in SAGA complex –'' Komagataella phaffii'' – Cryo EM &lt;br /&gt;<br /> *TFIID+TFIIA<br /> **[[7egd]], [[7egi]], [[7egj]] – hTFIID+TFIIA + TBP + DNA – Cryo EM&lt;br /&gt;<br /> *TFIIE<br /> **[[7nvw]], [[7nvx]] – hTFIIE + TFIIH + Mat1 + DNA – Cryo EM&lt;br /&gt;<br /> **[[5gpy]] - hTFIIE subunit 1 1-217 + subunit 2 141-217&lt;br /&gt;<br /> **[[1vd4]] - hTFIIE Zn finger domain 113-174 – NMR&lt;br /&gt;<br /> **[[2rnq]] – hTFIIE C terminal 378-439 - NMR&lt;br /&gt;<br /> **[[2rnr]] – hTFIIE C terminal + TFIIH PH domain- NMR&lt;br /&gt;<br /> **[[6pin]], [[6xjf]] – PfTFIIE-a &lt;br /&gt;<br /> *TFIIF<br /> **[[1f3u]] – hTFIIF&lt;br /&gt;<br /> **[[1nha]] – hTFIIF C terminal - NMR&lt;br /&gt;<br /> **[[1i27]] – hTFIIF C terminal (mutant)&lt;br /&gt;<br /> **[[1j2x]] – hTFIIF C terminal + RNA polymerase CTD phosphatase peptide&lt;br /&gt;<br /> **[[1onv]] – hTFIIF C terminal + serine phosphatase peptide - NMR&lt;br /&gt;<br /> **[[2k7l]] – hTFIIF C terminal + FCP1 peptide - NMR&lt;br /&gt;<br /> **[[7mei]], [[7mk9]] – yTFIIH in trailing EC complex – Cryo EM&lt;br /&gt;<br /> * TFIIH<br /> **[[5ivw]], [[6o9m]], [[7o4k]], [[7o4l]] – hTFIIH in preinitiation complex – Cryo EM&lt;br /&gt;<br /> *TF in RNA polymerase II<br /> **[[5iy6]], [[5iy7]], [[5iy8]], [[5iy9]], [[5iya]], [[5iyb]], [[5iyc]], [[5iyd]] – hTFIIA + hTFIIB + hTFIIE + hTFIIF + hTFIIH + DNA – Cryo EM&lt;br /&gt;<br /> **[[7edx]], [[7eg7]], [[7eg8]], [[7eg9]], [[7ega]], [[7nvv]], [[7nvy]], [[7nvz]], [[7nw0]] – hTFII in RNA polymerase – Cryo EM&lt;br /&gt;<br /> **[[8wb0]] – hTFIIF + in RNA polymerase II transcription pre-initiation complex - CryoEM&lt;br /&gt;<br /> **[[8iue]], [[8iuh]] – hTFIID + in RNA polymerase III pre-initiation complex - CryoEM&lt;br /&gt;<br /> **[[7nvr]], [[7nvs]], [[7nvt]], [[7nvu]] – hTFIIA + TFIIB + TFIIE + TFIIF + in mediator with RNA polymerase II transcription pre-initiation complex - CryoEM&lt;br /&gt;<br /> **[[5fyw]] – yTFIIA + yTFIIE + yTFIIF + DNA &lt;br /&gt;<br /> **[[5fz5]], [[6gyl]], [[6gym]] – yTFIIA + yTFIIE + yTFIIF + DNA – Cryo EM&lt;br /&gt;<br /> **[[6gyk]] – yTFIIA + yTFIIB + yTFIIF + DNA – Cryo EM&lt;br /&gt;<br /> **[[5sva]] – yTFIIA + yTFIIB + yTFIIE + yTFIIF + DNA – Cryo EM&lt;br /&gt;<br /> **[[4v1n]], [[4v1o]] – yTFIIB + yTFIIF – Cryo EM&lt;br /&gt;<br /> **[[7ml0]], [[7ml2]], [[7ml4]] - yTFIIB + TFIIE + TFIIF + in RNA polymerase II pre-initiation complex - CryoEM&lt;br /&gt;<br /> **[[3k1f]], [[3k7a]], [[4bbr]], [[4bbs]] – yTFIIB in RNA polymerase complex&lt;br /&gt;<br /> **[[7o72]] – yTFIIB in RNA polymerase II transcription pre-initiation complex - CryoEM&lt;br /&gt;<br /> **[[7o73]] – yTFIIA + TFIIE + TFIIF + in RNA polymerase II transcription pre-initiation complex - CryoEM&lt;br /&gt;<br /> **[[7o4i]], [[7o4j]], [[7o75]] – yTFIIA + TFIIB + TFIIE + TFIIF + in RNA polymerase II transcription pre-initiation complex - CryoEM&lt;br /&gt;<br /> **[[7zs9]], [[7zsa]], [[7zsb]], [[8bz1]] – yTFIIA + TFIIB + TFIID + TFIIE + TFIIF + nucleosome in RNA polymerase II transcription pre-initiation complex - CryoEM&lt;br /&gt;<br /> **[[5fmf]], [[5oqj]], [[5oqm]] – yTFIIA + yTFIIB + yTFIIE + yTFIIF + yTFIIH + DNA – Cryo EM&lt;br /&gt;<br /> **[[6kf4]], [[6kf9]] – TFIIF – ''Thermococcus kodakarensis'' - Cryo EM&lt;br /&gt;<br /> *TF RRN or RNA polymerase I-specific transcription initiation factor RRN<br /> **[[7oba]] – hTF RRN3 in RNA polymerase I – Cryo EM&lt;br /&gt;<br /> **[[3tj1]] – yTF RRN3 &lt;br /&gt;<br /> **[[5g5l]] – yTF RRN3 in RNA polymerase I&lt;br /&gt;<br /> **[[6rqt]], [[6rrd]] – yTF RRN3 in RNA polymerase I – Cryo EM&lt;br /&gt;<br /> **[[6ruo]] – yTF RRN3+RRN6+RRN11 in RNA polymerase I – Cryo EM&lt;br /&gt;<br /> **[[5o7x]] – yTF RRN6+RRN7+RRN11 &lt;br /&gt;<br /> **[[5oa1]], [[5w5y]], [[5w64]], [[5w65]], [[5w66]] – yTF RRN6+RRN7+RRN11 in RNA polymerase I – Cryo EM&lt;br /&gt;<br /> **[[5n5y]], [[5n5z]], [[5n60]], [[5n61]], [[6rqh]], [[6rql]], [[6rui]], [[6rwe]] – yTF RRN3+RRN6+RRN7+RRN11 in RNA polymerase I – Cryo EM&lt;br /&gt;<br /> **[[7z0o]] – yTF RRN5+RRN9+RRN10 in RNA polymerase I – Cryo EM&lt;br /&gt;<br /> <br /> }}<br /> <br /> [[Category:Topic Page]]</div>

Openfox https://proteopedia.org/index.php?title=Sigma_factor_3D_structures&diff=4433691 2026-03-29T10:38:44Z

<p>Openfox: Fix TreeAndMenu broken list structure</p> <hr /> <div>==3D structures of sigma factor==<br /> <br /> Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}<br /> {{#tree:id=OrganizedByTopic|openlevels=0|<br /> *Sigma factor<br /> **[[1ku2]] – TaSF-A region 1.2-3.1 – ''Thermus aquaticus''&lt;br /&gt;<br /> **[[1ku3]] – TaSF-A region 4 (mutant)&lt;br /&gt;<br /> **[[3les]] – TaSF-A residues 93-271&lt;br /&gt;<br /> **[[1sig]] – EcSF-70 – ''Escherichia coli''&lt;br /&gt;<br /> **[[2mao]] – EcSF-E region 2 - NMR&lt;br /&gt;<br /> **[[6fi7]] – EcSF-38 - NMR&lt;br /&gt;<br /> **[[1tty]] – TmSF-70 region 4 – ''Thermotoga maritima''&lt;br /&gt;<br /> **[[2k6x]] – TmSF-70 region 1.1 (mutant) - NMR&lt;br /&gt;<br /> **[[2ahq]] – AaSF-54 C terminal – ''Aquifex aeolicus'' - NMR&lt;br /&gt;<br /> **[[2k9l]], [[2k9m]] – AaSF-54 core domain - NMR&lt;br /&gt;<br /> **[[3mzy]] – SFH – ''Fusobacterium nucleatum''&lt;br /&gt;<br /> **[[1h3l]] – ScSF N terminal – ''Streptomyces coelicolor''&lt;br /&gt;<br /> **[[5fgm]] – ScSF-R region 4&lt;br /&gt;<br /> **[[7qh5]] – SF-G1 – ''Streptomyces tsukubensis''&lt;br /&gt;<br /> **[[5mww]] – BsSF-A region 1.1 - ''Bacillus subtilis'' - NMR &lt;br /&gt;<br /> **[[8b3z]] – BsSF-E N terminal &lt;br /&gt;<br /> **[[5xe7]] – MtSF-J – ''Mycobacterium tuberculosis''&lt;br /&gt;<br /> *Sigma factor complex with DNA<br /> **[[3ugo]], [[3ugp]] - TaSF-A region 2 + DNA&lt;br /&gt;<br /> **[[1ku7]] – TaSF-A region 4 (mutant) + DNA &lt;br /&gt;<br /> **[[4ki2]] - TaSF-A region 2-3 + DNA&lt;br /&gt;<br /> **[[2h27]] – EcSF-E region 4 + DNA&lt;br /&gt;<br /> **[[2map]] – EcSF-E region 2 + DNA - NMR&lt;br /&gt;<br /> **[[2o8k]], [[2o9l]] – AaSF-54 C terminal + DNA - NMR&lt;br /&gt;<br /> **[[5ui5]] – AaSF-54 residues 61-398 + DNA &lt;br /&gt;<br /> **[[6jhe]] – BsSF-W region 4 + DNA &lt;br /&gt;<br /> *Sigma factor complex with anti-sigma factor<br /> **[[1tlh]] – EcSF-70 region 4 + anti-σ factor&lt;br /&gt;<br /> **[[1rp3]], [[1sc5]] – AaSF-28 + anti-σ factor FLGM &lt;br /&gt;<br /> **[[6ivu]] – CtSF-1 + anti-σ factor – ''Clostridium thermocellum''&lt;br /&gt;<br /> **[[5wur]] – BsSF-W + anti-σ factor &lt;br /&gt;<br /> **[[5uxx]] – SF + anti-σ factor – ''Bartonella quintana''&lt;br /&gt;<br /> **[[4nqw]] – MtSF-K region 4 + anti-σ factor&lt;br /&gt;<br /> *Sigma factor complex with protein<br /> **[[3lev]] – TaSF-A residues 93-271 + antibody&lt;br /&gt;<br /> **[[1l9u]] – TaSF-A region 1.1-4 + RNAP subunits α,β,β’,ω&lt;br /&gt;<br /> **[[1or7]] – EcSF-E + σ-E factor negative regulatory protein &lt;br /&gt;<br /> **[[4lup]] – EcSF-E residues 3-92 + EcSF region 2 &lt;br /&gt;<br /> **[[2p7v]] – EcSF-70 region 4 + regulator of σ D&lt;br /&gt;<br /> **[[4yg2]], [[5uag]], [[5uaj]], [[5uaq]] – EcSF-70 + RNAP subunits α,β,β’,ω &lt;br /&gt;<br /> **[[5ui8]] – EcSF-45 + RNAP subunits α,β,β’,ω &lt;br /&gt;<br /> **[[6byu]] – EcSF-70 + RNAP subunits α,β,β’,ω + ppApp &lt;br /&gt;<br /> **[[4mey]], [[4ljz]], [[4lk1]], [[6cux]] – EcSF-70 + RNAP subunits α,β,β’,ω &lt;br /&gt;<br /> **[[6c9y]], [[6ca0]] – EcSF-70 + RNAP subunits α,β,β’,ω - Cryo EM&lt;br /&gt;<br /> **[[5nwt]] – EcSF-54 + RNAP subunits α,β,β’,ω &lt;br /&gt;<br /> **[[5w1s]] – EcSF-70 + RNAP subunits α,β,β’ + TraR&lt;br /&gt;<br /> **[[5vsw]] – EcSF-70 + RNAP subunits α,β,β’ + DnaK suppressor protein&lt;br /&gt;<br /> **[[5w1t]] – EcSF-70 + RNAP subunits α,β,β’ + RpoZ + DnaK suppressor protein&lt;br /&gt;<br /> **[[4lk0]], [[4llg]], [[4yfk]], [[4yfn]], [[4yfx]], [[4zh2]] – EcSF-70 + EcRNAP subunits α,β,β’,ω + RNAP inhibitor&lt;br /&gt;<br /> **[[3hug]] – MtSF-L + membrane protein &lt;br /&gt;<br /> **[[4x8k]] – MtSF-A region 2 + RBPA&lt;br /&gt;<br /> **[[6onu]], [[6ono]] – MtSF-A region 4 + WHIB1&lt;br /&gt;<br /> **[[5zx3]] – MtSF-H + RNAP subunits α,β,β’,ω &lt;br /&gt;<br /> **[[6fbv]] – MtSF-A + RNAP subunits α,β,β’,ω - Cryo EM&lt;br /&gt;<br /> **[[7pp4]], [[7q4u]], [[7q59]], [[7zf2]] – MtSF-B + RNAP subunits α,β,β’,ω - Cryo EM&lt;br /&gt;<br /> **[[6c05]], [[6c06]] – MtSF-A + RNAP subunits α,β,β’,ω + RbpA - Cryo EM&lt;br /&gt;<br /> **[[3wod]], [[2a6e]], [[2cw0]], [[5tmf]] – TtSF-A + RNAP subunits α,β,β’,ω - ''Thermus thermophilus'' &lt;br /&gt;<br /> **[[2be5]] – TtSF-70 + RNAP subunits α,β,β’,ω + inhibitor&lt;br /&gt;<br /> **[[6pfj]], [[6pfv]] – ScSF (mutant) + AMFC protein&lt;br /&gt;<br /> **[[5tmc]] – TtSF-A + RNAP subunits α,β,β’,ω + protein + G4P&lt;br /&gt;<br /> **[[5xj0]] – TtSF-A + RNAP subunits α,β,β’,ω + GP39 + GP76&lt;br /&gt;<br /> **[[5x22]] – TtSF-A + RNAP subunits α,β,β’,ω + GpA + CMPcPP&lt;br /&gt;<br /> **[[4lk0]], [[4llg]], [[4yfk]], [[4yfn]], [[4yfx]], [[4zh2]] – EcSF7-0 + EcRNAP subunits α,β,β’,ω + RNAP inhibitor&lt;br /&gt;<br /> **[[4cxf]] – SF CNRH + CNRY – ''Cupriavidus metallidurans''&lt;br /&gt;<br /> **[[4g6d]], [[4g8x]], [[4g94]] – SF-70 region 4 + Orf067 – ''Staphylococcus aureus''&lt;br /&gt;<br /> **[[5yix]] – CcSF-70 + GcrA - ''Caulobacter crescentus''&lt;br /&gt;<br /> **[[6in7]] – PaSF-H + ALGU – ''Pseudomonas aeruginosa''&lt;br /&gt;<br /> **[[6eyd]] – MsSF-A + RNAP subunits α,β,β’,ω - ''Mycobacterium smegmatis'' – Cryo EM &lt;br /&gt;<br /> **[[6dxo]] – SvSF-A + BLDN – ''Streptomyces venezuelae''&lt;br /&gt;<br /> **[[7vf9]] – PaSF-38 + RNAP subunits α,β,β’,ω - Cryo EM&lt;br /&gt;<br /> *E. coli sigma factor-70 complex with protein, DNA and RNA<br /> **[[6p1k]], [[7khb]] – EcSF-70 + EcRNAP subunits α,β,β’,ω - Cryo EM&lt;br /&gt;<br /> **[[6vjs]] – EcSF-70 + EcRNAP subunits α,β,β’,ω &lt;br /&gt;<br /> **[[3iyd]] – EcSF-70 in transcription initiation complex + catabolite gene activator&lt;br /&gt;<br /> **[[4jk1]], [[4jk2]], [[4jkr]] – EcSF-70 + EcRNAP subunits α,β,β’,ω + G4P&lt;br /&gt;<br /> **[[7khe]], [[7khi]] – EcSF-70 + EcRNAP subunits α,β,β’,ω + G4P – Cryo EM&lt;br /&gt;<br /> **[[7khc]] – EcSF-70 + EcRNAP subunits α,β,β’,ω + POP – Cryo EM&lt;br /&gt;<br /> **[[4yln]], [[4ylo]], [[4ylp]], [[6n62]], [[6utv]], [[6utw]], [[6utx]] [[6uty]], [[6utz]], [[6uu0]], [[6uu1]], [[6uuc]] [[6uu3]], [[6uu4]], [[6uu5]], [[6uu6]], [[6uu7]], [[6uu8]], [[6uu2]], [[6uua]], [[6uuc]] – EcSF-70 in transcription initiation complex&lt;br /&gt;<br /> **[[6b6h]], [[6xl5]], [[6xl9]], [[6xlj]], [[6xll]], [[7vwy]], [[8igr]], [[8igs]] – EcSF-70 in transcription activation complex - Cryo EM&lt;br /&gt;<br /> **[[5nss]] – EcSF-54 + EcRNAP subunits α,β,β’,ω + phage shock protein F + DNA - Cryo EM&lt;br /&gt;<br /> **[[5nsr]], [[6gh6]], [[6gh5]], [[6gfw]], [[7szk]] – EcSF-54 + EcRNAP subunits α,β,β’,ω + DNA - Cryo EM&lt;br /&gt;<br /> **[[7bef]], [[7beg]], [[7chw]], [[7mkd]], [[7mke]], [[7mki]], [[7mkj]] – EcSF-70 + EcRNAP subunits α,β,β’,ω + DNA - Cryo EM&lt;br /&gt;<br /> **[[6n61]] – EcSF-70 + EcRNAP subunits α,β,β’,ω + capistruin + DNA&lt;br /&gt;<br /> **[[6n60]] – EcSF-70 + EcRNAP subunits α,β,β’,ω + microcin + DNA&lt;br /&gt;<br /> **[[6p18]] – EcSF-70 in transcription antitermination complex + protein Q&lt;br /&gt;<br /> **[[6jnx]], [[7ubm]] – EcSF-70 in transcription antitermination complex + protein Q – Cryo EM&lt;br /&gt;<br /> **[[7ubn]] – EcSF-70 in transcription antitermination complex + NusA – Cryo EM&lt;br /&gt;<br /> **[[6jbq]] – EcSF-E in transcription initiation complex – Cryo EM&lt;br /&gt;<br /> **[[5vt0]] – EcSF-70 + EcRNAP subunits α,β,β’,ω + RNA – Cryo EM&lt;br /&gt;<br /> **[[6k4y]] – EcSF-70 + EcRNAP subunits α,β,β’,ω + anti-SF + MOTA + DNA – Cryo EM&lt;br /&gt;<br /> **[[6ldi]], [[6xh7]], [[6xh8]], [[7c17]] – EcSF-70 in transcription activation complex + CueR – Cryo EM&lt;br /&gt;<br /> **[[6pb4]], [[6pb5]], [[6pb6]] – EcSF-70 in transcription activation complex + Crp – Cryo EM&lt;br /&gt;<br /> **[[7vwz]] – EcSF-70 in transcription activation complex + right origin-binding protein – Cryo EM&lt;br /&gt;<br /> **[[7w5w]], [[7w5x]], [[7w5y]] – EcSF-70 in transcription activation complex + SoxS – Cryo EM&lt;br /&gt;<br /> **[[8jo2]] – EcSF-70 in transcription activation complex + BasR – Cryo EM&lt;br /&gt;<br /> **[[6n57]], [[6n58]] – EcSF-70 in transcription initiation complex + Tsar – Cryo EM&lt;br /&gt;<br /> **[[6psq]], [[6psr]], [[6pss]], [[6pst]], [[6psu]], [[6psv]], [[6psw]] – EcSF-70 in transcription initiation complex + Trar – Cryo EM&lt;br /&gt;<br /> **[[6n4c]], [[6oul]] – EcSF-70 in transcription initiation complex – Cryo EM&lt;br /&gt;<br /> **[[7khe]] – EcSF-70 in transcription initiation complex + GTP – Cryo EM&lt;br /&gt;<br /> **[[7chw]], [[7khb]] – EcSF-70 in transcription open promoter complex – Cryo EM&lt;br /&gt;<br /> **[[6wmu]], [[7c97]], [[7dy6]] – EcSF-70 in transcription open promoter complex + SspA – Cryo EM&lt;br /&gt;<br /> **[[7khi]] – EcSF-70 in transcription open promoter complex + DKSA + G4P – Cryo EM&lt;br /&gt;<br /> **[[7khc]] – EcSF-70 in transcription closed promoter complex – Cryo EM&lt;br /&gt;<br /> **[[6xlm]], [[7n4e]], [[7xui]] – EcSF-70 in elongation complex – Cryo EM&lt;br /&gt;<br /> *Other sigma factor complex with protein, DNA and RNA<br /> **[[4oio]], [[4g7h]], [[4g7o]], [[4g7z]], [[4q4z]], [[4q5s]], [[6p71]], [[6p70]], [[6oy7]], [[6oy6]], [[6oy5]], [[6ow3]], [[6ovy]], [[6ovr]], [[7mli]], [[7mlj]] – TtSF-A in reiterative transcription complex &lt;br /&gt;<br /> **[[7rdq]] – TtSF-A in reiterative transcription complex – Cryo EM&lt;br /&gt;<br /> **[[5vo8]] – TtSF-A in reiterative transcription complex + GTP&lt;br /&gt;<br /> **[[6kqd]], [[6kqe]], [[6kqf]], [[6kqg]], [[6kqh]], [[6kql]], [[6kqm]], [[6kqn]], [[6l74]], [[6lts]], [[5e17]], [[5e18]] – TtSF-A in initial&lt;br&gt;transcription complex &lt;br /&gt;<br /> **[[6wox]], [[6woy]] – TtSF-A in initial transcription complex + CPT&lt;br /&gt;<br /> **[[1smy]] – TtSF + RNAP subunits α,β,β’,ω + G4P&lt;br /&gt;<br /> **[[5voi]] – TtSF-A + TtRNAP subunits α,β,β’,ω + DNA &lt;br /&gt;<br /> **[[7eh2]], [[7mlb]] – TtSF-A in transcription initiation complex &lt;br /&gt;<br /> **[[5d4c]] – TtSF-A in transcription initiation complex + CTP + ATP&lt;br /&gt;<br /> **[[5d4d]] – TtSF-A in transcription initiation complex + CTP + NAD&lt;br /&gt;<br /> **[[5d4e]] – TtSF-A in transcription initiation complex + CTP + dephosphate-CoA&lt;br /&gt;<br /> **[[5x22]], [[7eh0]], [[7eh1]] – TtSF-A in transcription initiation complex + CMPPP&lt;br /&gt;<br /> **[[5i2d]] – TtSF-A in transcription activation complex + transcriptional regulator &lt;br /&gt;<br /> **[[7f75]] – BsSF-A in transcription activation complex + transcriptional regulator – Cryo EM&lt;br /&gt;<br /> **[[7ckq]] – BsSF-A in transcription activation complex + multidrug regulator + YKZG – Cryo EM&lt;br /&gt;<br /> **[[3n97]] – TaSF-A region 4 + RNAP subunits α + DNA&lt;br /&gt;<br /> **[[4xln]], [[4xlp]], [[4xlq]], [[5tjg]] – TaSF-A in transcription initiation complex&lt;br /&gt;<br /> **[[1l9z]] – TaSF-A + RNAP subunits α,β,β’,ω + DNA – Cryo EM &lt;br /&gt;<br /> **[[4xlr]], [[4xls]] – TaSF-A in transcription initiation complex + CarD-like transcriptional regulator&lt;br /&gt;<br /> **[[1rio]] - TaSF-A region 4 + repression protein CI + DNA&lt;br /&gt;<br /> **[[5uha]], [[5uh5]], [[5uh8]], [[5uh9]], [[7u22]] – MtSF-A in transcription initiation complex&lt;br /&gt;<br /> **[[6dcf]] – MtSF-A in transcription initiation complex + RbpA&lt;br /&gt;<br /> **[[8hih]] – MtSF-A in transcription initiation complex + transctriptional regulatory protein – Cryo EM&lt;br /&gt;<br /> **[[6c04]], [[7kin]] – MtSF-A + RNAP subunits α,β,β’,ω + RbpA + DNA - Cryo EM&lt;br /&gt;<br /> **[[7kif]], [[7kim]] – MtSF-A + RNAP subunits α,β,β’,ω + WhiB7 + DNA - Cryo EM&lt;br /&gt;<br /> **[[5uhe]], [[5uhf]] – MtSF-A in transcription initiation complex + inhibitor&lt;br /&gt;<br /> **[[6jcy]], [[6jcx]], [[5zx2]] – MtSF-H in transcription initiation complex&lt;br /&gt;<br /> **[[6kon]], [[6koo]], [[6kop]], [[6koq]] – MtSF-H in transcription initiation complex &lt;br /&gt;<br /> **[[6dve]], [[6dvd]], [[7rwi]] – MtSF-L in transcription initiation complex&lt;br /&gt;<br /> **[[6dvc]], [[6dvb]], [[6dv9]], [[6tye]], [[6tyf]], [[6tyg]] – MtSF-L in transcription initiation complex &lt;br /&gt;<br /> **[[5tw1]], [[6cce]] – MsSF-A in transcription initiation complex + peptide - ''Mycobacterium smegmatis''&lt;br /&gt;<br /> **[[5vi5]], [[5vi8]], [[6vvv]] – MsSF-A in transcription initiation complex&lt;br /&gt;<br /> **[[7p5x]] – MsSF-A in transcription initiation complex + PafBC – Cryo EM&lt;br /&gt;<br /> **[[8i24]] – AtSF-I6 + RNAP subunits α,β,β’,ω + DNA – ''Acetivibrio thermocellum'' - Cryo EM&lt;br /&gt;<br /> **[[8i23]] – AtSF-I1 + RNAP subunits α,β,β’,ω + DNA - Cryo EM&lt;br /&gt;<br /> **[[7ye1]] , [[7ye2]] – CcSF-70 + RNAP subunits α,β,β’,ω + DNA + GcrA – Cryo EM&lt;br /&gt;<br /> **[[7f0r]] – PaSF-38 in transcription activation complex + SutA – Cryo EM&lt;br /&gt;<br /> **[[7xl3]], [[7xl4]] – PaSF-S in transcription activation complex + SutA – Cryo EM&lt;br /&gt;<br /> **[[7xya]] – PaSF-70 in transcription antitermination complex + ALPA – Cryo EM&lt;br /&gt;<br /> **[[8gzg]], [[8gzh]] – SF-A + RNAP subunits α,β,β’,ω + DNA + RNA – ''Synechocystis'' - Cryo EM&lt;br /&gt;<br /> **[[8h40]] – AnSF-A + RNAP subunits α,β,β’,ω + DNA + NtcA – ''Anabaena'' - Cryo EM&lt;br /&gt;<br /> **[[8h3v]] – AnSF-A + RNAP subunits α,β,β’,ω + DNA + NtcA + NtcB - Cryo EM&lt;br /&gt;<br /> **[[7vpd]], [[7vpz]], [[7x74]], [[7x75]], [[7x76]] – ScSF-A + RNAP subunits α,β,β’,ω + metal uptake regulation protein + DNA + RNA - Cryo EM&lt;br /&gt;<br /> **[[68hkc]] – EcSF-32 in transcription initiation complex – Cryo EM&lt;br /&gt;<br /> **[[6pmi]], [[6pmj]] – EcSF-28 in transcription initiation complex – Cryo EM&lt;br /&gt;<br /> **[[5ipl]], [[5ipm]], [[5ipn]] – EcSF-38 in transcription initiation complex &lt;br /&gt;<br /> **[[8dy7]], [[8dy9]] – SvSF-A + RNAP subunits α,β,β’,ω + WhiA + WhiB + RbpA + DNA - Cryo EM&lt;br /&gt;<br /> *Sigma factor complex with protein and DNA and antibiotics<br /> **[[4oin]], [[4oip]], [[4oiq]], [[4oir]], [[5x21]] – TtSF-A in transcription initiation complex + antibiotic &lt;br /&gt;<br /> **[[6cuu]] – TtSF-A + TtRNAP subunits α,β,β’,ω + DNA + antibiotic&lt;br /&gt;<br /> **[[2a68]], [[2a69]], [[2a6h]], [[3dxj]], [[3eql]], [[4mq9]] – TtSF-70 + RNAP subunits α,β,β’,ω + antibiotic &lt;br /&gt;<br /> **[[5uhg]] – MtSF-A in transcription initiation complex + antibiotic + inhibitor&lt;br /&gt;<br /> **[[5uh6]], [[5uhc]], [[5uhd]], [[5uhb]] – MtSF-A in transcription initiation complex + antibiotic&lt;br /&gt;<br /> **[[6bzo]] – MtSF-A in transcription initiation complex + RbpA + antibiotic - Cryo EM&lt;br /&gt;<br /> **[[6vvt]], [[6vvx]], [[6vvz]] – MtSF-A in transcription initiation complex + antibiotic – Cryo EM&lt;br /&gt;<br /> **[[6vvy]], [[6vw0]] – MtSF-A in transcription open promoter complex + antibiotic – Cryo EM&lt;br /&gt;<br /> **[[6m7j]] – MtSF-A + RNAP subunits α,β,β’,ω + RBPA + DNA + antibiotic – Cryo EM&lt;br /&gt;<br /> **[[6eec]], [[6ee8]], [[6edt]] – MtSF-A + RNAP subunits α,β,β’,ω + RBPA + CARD + DNA + antibiotic – Cryo EM&lt;br /&gt;<br /> **[[6ccv]] – MsSF-A in transcription initiation complex + peptide + RbpA + antibiotic&lt;br /&gt;<br /> **[[7l7b]] – SF-A + RNAP subunits α,β,β’,ω + antibiotic – Clostridia bacterium - Cryo EM&lt;br /&gt;<br /> **[[4mex]], [[4kmu]], [[4kn4]], [[4kn7]], [[4xsx]], [[4xsy]], [[4xsz]] [[4zh3]], [[4zh4]], [[5uac]], [[5uah]], [[5ual]] – EcSF-70 + RNAP subunits α,β,β’,ω + antibiotic &lt;br /&gt;<br /> **[[7szj]] – EcSF-70 + RNAP subunits α,β,β’,ω + antibiotic – Cryo EM&lt;br /&gt;<br /> <br /> }}<br /> <br /> [[Category:Topic Page]]</div>

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