Proteopedia - User contributions [en]

User:Rami Rajasekhar Reddy

2010-04-30T01:42:27Z

Rami Rajasekhar Reddy:

One of the [[CBI Molecules]] being studied in the [http://www.umass.edu/cbi/ University of Massachusetts Amherst Chemistry-Biology Interface Program] at UMass Amherst and on display at the [http://www.molecularplayground.org/ Molecular Playground].

<scene name='User:Rami_Rajasekhar_Reddy/Avidin/3'>Avidin </scene>

<applet size='[450,338]' frame='true' align='right'
caption='Avidin'scene='User:Rami_Rajasekhar_Reddy/Avidin/3' />

Avidin is protein which is found in chicken egg white. Its interaction with biotin is known to be one of the strongest non-covalent bonds, this high binding affinity towards biotin is being vastly explored in the filds of biology and chemistry.

User:Rami Rajasekhar Reddy

2010-04-30T01:41:39Z

Rami Rajasekhar Reddy:

One of the [[CBI Molecules]] being studied in the [http://www.umass.edu/cbi/ University of Massachusetts Amherst Chemistry-Biology Interface Program] at UMass Amherst and on display at the [http://www.molecularplayground.org/ Molecular Playground].

<scene name='User:Rami_Rajasekhar_Reddy/Avidin/3'>Avidin Model</scene>

<applet size='[450,338]' frame='true' align='right'
caption='Avidin'scene='User:Rami_Rajasekhar_Reddy/Avidin/3' />

Avidin is protein which is found in chicken egg white. Its interaction with biotin is known to be one of the strongest non-covalent bonds, this high binding affinity towards biotin is being vastly explored in the filds of biology and chemistry.

CBI Molecules

2010-04-30T01:38:11Z

Rami Rajasekhar Reddy:

These are molecules under study by members of the [http://www.umass.edu/cbi/ University of Massachusetts Amherst Chemistry-Biology Interface Program].
Many of the molecules we study are featured at the [http://www.molecularplayground.org/ Molecular Playground]. Follow the links below to read nontechnical descriptions in Proteopedia.

UMass CBI Members, add your molecules to the list; follow the instructions below the list.

'''[[Molecular Playground/Bacterial Chemotaxis Receptors]]''', Thompson & Weis laboratories

'''[[User:Tsung-Yi_Lin/6-deoxyerythronolide_B_synthase|Molecular Playground/6-Deoxyerythronolide B Synthase]]''', Tsung-Yi Lin

'''[[Molecular Playground/Lysozime ]]''', Daniella Gonzalez

'''[[Molecular Playground/Beta-galactosidase]]''', Judy Ventura

'''[[Molecular Playground/TRAIL]]''', Charley Swofford

'''[[Molecular Playground/Taxol]]''', Rohan Patil

'''[[Molecular Playground/Human Protective Protein Cathepsin A]]''', Yadilette Rivera-Colon

'''[[Molecular Playground/YKL-40]]''', Ralph A. Francescone III

'''[[Reverse transcriptase|Molecular Playground/Reverse Transcriptase]]''', Rotello lab (Daniel Moyano-Marino)

'''[[User:Krishna Reddy Ragupathi|Molecular Playground/Carbonic Anhydrase]]''', Krishna Reddy Raghupathi

'''[[User:Rami Rajasekhar Reddy|Molecular Playground/Avidin]]''', Rami Rajasekar Reddy

Instructions:

'''We plan to award a prize for the best CBI Molecules page and/or scene!'''

Choose a molecule that is part of your research project.

1. If you don't already have one, request a Proteopedia account and log in. If you are new to Proteopedia, click Help in the navigation box on the left to get started.

2. Make yourself a sandbox page in which you will develop your CBI Molecule scene and description (Enter "User:your name/sandbox 1" (omit quotes) in the search box, then follow instructions to edit this page. See example [[User:Lynmarie K Thompson/Sandbox 1]]).

3. Follow the format of the sample CBI molecule page [[Molecular Playground/Bacterial Chemotaxis Receptors]]. Easiest way to do this is to copy this page (in editing mode), paste it into your sandbox page, keep the first paragraph about CBI molecules, and then edit to describe and display your molecule. Your goal is to make this an interesting, nontechnical description of the molecule. If multiple people in one group work on the same molecule, you can each make different scenes for the same CBI molecule and each describe them on the same proteopedia page. Talk with each other about your plans so you are not duplicating efforts.

4. Create an attractive scene for your molecule: use the scene authoring tools in the edit mode to create the view you like, then copy the wiki text into your window.

5. Follow instructions at [[Molecular Playground/Procedures]] as well. But don't "capture the state script for your scene"; that will be done for you (see #7).

6. When you are happy with your sandbox page, make yourself a permanent Proteopedia page, which will be editable by others. Enter "Molecular Playground/your molecule" (omit quotes) in the search box, then follow the instructions to create a new page with this title. Copy the content of your sandbox to this new page.

7. When you have finished the final version of your page and scene, edit this CBI Molecules page to add a listing and link for your molecule, following the "Bacterial chemotaxis receptors" example above. Once this link is there, your scene is considered done, and someone will capture the state script for display on the Molecular Playground.

User:Rami Rajasekhar Reddy

2010-04-30T01:33:48Z

Rami Rajasekhar Reddy:

One of the [[CBI Molecules]] being studied in the [http://www.umass.edu/cbi/ University of Massachusetts Amherst Chemistry-Biology Interface Program] at UMass Amherst and on display at the [http://www.molecularplayground.org/ Molecular Playground].

<scene name='User:Rami_Rajasekhar_Reddy/Avidin/3'>Avidin</scene>

<applet size='[450,338]' frame='true' align='right'
caption='Avidin'scene='User:Rami_Rajasekhar_Reddy/Avidin/3' />

Avidin is protein which is found in chicken egg white. Its interaction with biotin is known to be one of the strongest non-covalent bonds, this high binding affinity towards biotin is being vastly explored in the filds of biology and chemistry.

User:Rami Rajasekhar Reddy

2010-04-30T01:30:50Z

Rami Rajasekhar Reddy:

One of the [[CBI Molecules]] being studied in the [http://www.umass.edu/cbi/ University of Massachusetts Amherst Chemistry-Biology Interface Program] at UMass Amherst and on display at the [http://www.molecularplayground.org/ Molecular Playground].

<scene name='User:Rami_Rajasekhar_Reddy/Avidin/2'>Avidin</scene>

<applet size='[450,338]' frame='true' align='right'
caption='Avidin'scene='User:Rami_Rajasekhar_Reddy/Avidin/2' />

Avidin is protein which is found in chicken egg white. Its interaction with biotin is known to be one of the strongest non-covalent bonds, this high binding affinity towards biotin is being vastly explored in the filds of biology and chemistry.

User:Rami Rajasekhar Reddy

2010-04-30T01:17:29Z

Rami Rajasekhar Reddy:

User:Rami Rajasekhar Reddy

2010-04-30T01:16:10Z

Rami Rajasekhar Reddy:

User:Rami Rajasekhar Reddy

2010-04-30T01:12:51Z

Rami Rajasekhar Reddy:

User:Rami Rajasekhar Reddy

2010-04-30T00:38:47Z

Rami Rajasekhar Reddy:

Graduate Student, University of Massachusetts, Amherst.
I completed my Masters in Chemistry in University of Hyderabad, AP, India.
At present I am in CBI Program, in University of Massachusetts, Amherst.

<applet size='[450,338]' frame='true' align='right'
caption='YYY' />

<scene name='User:Rami_Rajasekhar_Reddy/Avidin/3'>Avidin</scene>

User:Rami Rajasekhar Reddy

2010-04-30T00:38:03Z

Rami Rajasekhar Reddy:

User:Rami Rajasekhar Reddy

2010-04-30T00:24:42Z

Rami Rajasekhar Reddy:

Graduate Student, University of Massachusetts, Amherst.
I completed my Masters in Chemistry in University of Hyderabad, AP, India.
At present I am in CBI Program, in University of Massachusetts, Amherst.

<scene name='User:Rami_Rajasekhar_Reddy/Avidin/2'>Avidin</scene>

User:Rami Rajasekhar Reddy

2010-04-30T00:20:51Z

Rami Rajasekhar Reddy:

Graduate Student, University of Massachusetts, Amherst.
I completed my Masters in Chemistry in University of Hyderabad, AP, India.
At present I am in CBI Program, in University of Massachusetts, Amherst.
<scene name='User:Rami_Rajasekhar_Reddy/Avidin/1'>TextToBeDisplayed</scene>

User:Rami Rajasekhar Reddy/sandbox1

2010-03-16T15:52:32Z

Rami Rajasekhar Reddy:

<applet size='[450,338]' frame='true' align='right'
caption='YYY' />
<scene name='User:Rami_Rajasekhar_Reddy/sandbox1/1/2'>TextToBeDisplayed</scene>

<scene name='User:Rami_Rajasekhar_Reddy/sandbox1/2/1'>TextToBeDisplayed</scene>

<scene name='User:Rami_Rajasekhar_Reddy/sandbox1/1/4'>TextToBeDisplayed</scene>

<scene name='User:Rami_Rajasekhar_Reddy/sandbox1/1/5'>scene skipping transitions for mp</scene>

User:Rami Rajasekhar Reddy/sandbox1

2010-03-16T15:51:59Z

Rami Rajasekhar Reddy:

<applet size='[450,338]' frame='true' align='right'
caption='YYY' />
<scene name='User:Rami_Rajasekhar_Reddy/sandbox1/1/2'>TextToBeDisplayed</scene>
<scene name='User:Rami_Rajasekhar_Reddy/sandbox1/2/1'>TextToBeDisplayed</scene>
<scene name='User:Rami_Rajasekhar_Reddy/sandbox1/1/4'>TextToBeDisplayed</scene>
<scene name='User:Rami_Rajasekhar_Reddy/sandbox1/1/5'>scene skipping transitions for mp</scene>

User:Rami Rajasekhar Reddy/sandbox1

2010-03-16T15:33:13Z

Rami Rajasekhar Reddy:

<applet size='[450,338]' frame='true' align='right'
caption='YYY' />
<scene name='User:Rami_Rajasekhar_Reddy/sandbox1/1/2'>TextToBeDisplayed</scene>
<scene name='User:Rami_Rajasekhar_Reddy/sandbox1/2/1'>TextToBeDisplayed</scene>
<scene name='User:Rami_Rajasekhar_Reddy/sandbox1/1/4'>TextToBeDisplayed</scene>
<scene name='User:Rami_Rajasekhar_Reddy/sandbox1/1/5'>TextToBeDisplayed1</scene>

User:Rami Rajasekhar Reddy/sandbox1

2010-03-16T15:07:40Z

Rami Rajasekhar Reddy: xxx

User:Rami Rajasekhar Reddy/sandbox2

2010-03-16T15:00:23Z

Rami Rajasekhar Reddy: New page: <applet size='[450,338]' frame='true' align='right' caption='YYY' />

User:Rami Rajasekhar Reddy/sandbox1

2010-03-16T14:59:34Z

Rami Rajasekhar Reddy:

<applet size='[450,338]' frame='true' align='right'
caption='YYY' />
<scene name='User:Rami_Rajasekhar_Reddy/sandbox1/1/2'>TextToBeDisplayed</scene>

User:Rami Rajasekhar Reddy/sandbox1

2010-03-16T14:49:29Z

Rami Rajasekhar Reddy: xxx

<applet size='[450,338]' frame='true' align='right'
caption='YYY' />
<scene name='User:Rami_Rajasekhar_Reddy/sandbox1/1/1'>TextToBeDisplayed</scene>

User:Rami Rajasekhar Reddy/sandbox1

2010-03-16T14:45:18Z

Rami Rajasekhar Reddy: zwitterionic monomer

User:Rami Rajasekhar Reddy/sandbox1

2010-03-16T14:38:33Z

Rami Rajasekhar Reddy: amphiphilic zwitterionic monomer

acrylate based zwitterionic monomer.