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	<id>https://proteopedia.org/api.php?action=feedcontributions&amp;feedformat=atom&amp;user=Rebecca+Holstein</id>
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	<entry>
		<id>https://proteopedia.org/index.php?title=GP1_of_Lassa_Virus&amp;diff=2760850</id>
		<title>GP1 of Lassa Virus</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=GP1_of_Lassa_Virus&amp;diff=2760850"/>
		<updated>2017-08-29T13:31:48Z</updated>

		<summary type="html">&lt;p&gt;Rebecca Holstein: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;StructureSection load=&#039;4zjf&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;4ZJF structure&#039; scene=&#039;76/761695/4zjf_chaina/4&#039;&amp;gt;&lt;br /&gt;
==Importance==&lt;br /&gt;
Lassa virus (LASV), an Old World (OW) [http://en.wikipedia.org/wiki/Arenavirus arenavirus], is a notorious disease-causing agent primarily in West Africa that is able to spread from rodents to humans. This deadly pathogen causes severe viral hemorrhagic fevers and significant mortality. So far, there are no available vaccines for LASV, and only one successful vaccine against another virus found in the &#039;&#039;Arenaviridae&#039;&#039; family: Junin virus&amp;lt;ref name=&amp;quot;PMID: 9466512&amp;quot;&amp;gt;PMID: 9466512 &amp;lt;/ref&amp;gt;. Structural data at atomic resolution for viral proteins are laying the foundation for better understanding both the biology behind viral proteins and ways to combat against them. Determining the structure of the complete trimeric glycoprotein complex (GPC), composed of GP1, GP2, and SSP (stable signal peptide), will pave the path towards a future discovery of novel antiviral drugs. This is the first representative structure for OW arenaviruses. This structure reveals the overall architecture of GP1 domains from OW arenaviruses and important information relating to the mechanisms for pH switching and the binding of LASV to [[LAMP1]] (Lysosome-associated membrane glycoprotein), a recently identified host receptor that is critical for successful infection. In addition, structural analysis suggests two novel immune evasion mechanisms that LASV may utilize to escape antibody-based immune response.&lt;br /&gt;
== Function ==&lt;br /&gt;
&#039;&#039;&#039;GP1&#039;&#039;&#039; (Glycoprotein 1) is the receptor binding domain of LASV that mediates receptor recognition. Research thus far indicates that GP1 from LASV may undergo irreversible conformational changes that could serve as an immunological decoy mechanism. Arenaviruses utilize various cell surface proteins as their cellular receptors for recognizing and attaching to target cells. New World (NW) arenaviruses that belong to clades A and B use transferrin receptor 1 (TfR1)&amp;lt;ref name=&amp;quot;PMID:17287727&amp;quot;&amp;gt;PMID:17287727&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID:24920811&amp;quot;&amp;gt;PMID:24920811&amp;lt;/ref&amp;gt;, whereas OW arenaviruses, as well as clade C NW arenaviruses, use α-dystroglycan (α-DG) &amp;lt;ref name=&amp;quot;PMID:9851928&amp;quot;&amp;gt;PMID:9851928&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID:15857984&amp;quot;&amp;gt;PMID:15857984&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID:11967329&amp;quot;&amp;gt;PMID:11967329&amp;lt;/ref&amp;gt;. A trimeric class 1 viral glycoprotein complex (the spike complex) recognizes the cellular receptors and mediates membrane fusion upon exposure to low pH at the lysosome &amp;lt;ref name=&amp;quot;PMID:16731928&amp;quot;&amp;gt;PMID:16731928&amp;lt;/ref&amp;gt;. The spike complex is expressed as a glycoprotein precursor that is cleaved into three segments by a signal peptidase and SKI-1/S1P protease&amp;lt;ref name=&amp;quot;PMID:21612810&amp;quot;&amp;gt;PMID:21612810&amp;lt;/ref&amp;gt;. The functional spike complex consists of GP1, a membrane-anchored fusion protein (GP2), and a unique structured SSP &amp;lt;ref name=&amp;quot;PMID:23202458&amp;quot;&amp;gt;PMID:23202458&amp;lt;/ref&amp;gt;.                                                                                                                                                                                                                                                                                                                                                                                         &lt;br /&gt;
==Structural Highlights==&lt;br /&gt;
GP1 of LASV is a single chain structure with attached &amp;lt;scene name=&#039;76/761695/Nag/4&#039;&amp;gt;NAG&amp;lt;/scene&amp;gt; glycans. The overall architecture of GP1 features a central β-sheet and two distinct halves: a glycosylated half containing the receptor-binding site that is made mostly by the central β-sheet and surrounding loops and a half that contains mostly helices and most likely faces the trimer axis&amp;lt;ref name=&amp;quot;PMID: 25972533&amp;quot;&amp;gt;PMID: 25972533&amp;lt;/ref&amp;gt;, as determined in the [http://www.weizmann.ac.il/Structural_Biology/diskin Diskin laboratory] at the Weizmann Institute of Science. The method used to determine this structure was [http://en.wikipedia.org/wiki/X-ray_crystallography X-ray diffraction]&lt;br /&gt;
===LAMP1 Binding Site===&lt;br /&gt;
The primary cellular receptor of LASV is α-dystroglycan (α-DG)&amp;lt;ref name=&amp;quot;PMID: 9851928&amp;quot;&amp;gt;PMID: 9851928&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 15857984&amp;quot;&amp;gt;PMID: 15857984&amp;lt;/ref&amp;gt;, which is recognized by a trimeric class 1 viral GPC (spike complex) on the viral surface&amp;lt;ref name=&amp;quot;PMID: 16731928&amp;quot;&amp;gt;PMID: 16731928&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 26849049&amp;quot;&amp;gt;PMID: 26849049&amp;lt;/ref&amp;gt;. Following successful attachment to α-DG on cells, LASV is internalized via [http://en.wikipedia.org/wiki/Pinocytosis macropinocytosis]&amp;lt;ref name=&amp;quot;PMID: 27147735&amp;quot;&amp;gt;PMID: 27147735&amp;lt;/ref&amp;gt;, and the GPC facilitates membrane fusion at the acidic environment of a late endosomal compartment&amp;lt;ref name=&amp;quot;PMID: 16731928&amp;quot;&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 21931550&amp;quot;&amp;gt;PMID: 21931550 &amp;lt;/ref&amp;gt;. Recent studies have shown that successful infection by LASV requires it to switch in a pH-dependent manner from α-DG to LAMP1&amp;lt;ref name=&amp;quot;PMID: 27605678&amp;quot; /&amp;gt;&amp;lt;ref name=&amp;quot;PMID:24970085&amp;quot;&amp;gt;PMID:24970085&amp;lt;/ref&amp;gt;. Binding of the &amp;lt;scene name=&#039;76/761695/Lamp1bindingsite/14&#039;&amp;gt;LAMP1&amp;lt;/scene&amp;gt; endosomal compartment triggers the spikes.&lt;br /&gt;
=== Histidine Triad===&lt;br /&gt;
Included in this structure is a unique &amp;lt;scene name=&#039;76/761695/Histriad/9&#039;&amp;gt;triad of histidines&amp;lt;/scene&amp;gt; that is highly conserved among OW arenaviruses. Located on the β-sheet face of GP1,  the histidine triad is a structural element that directly interacts with LAMP1 and helps stabilize a LAMP1-&amp;quot;compatible&amp;quot; conformation by providing a molecular mechanism for the pH-dependent receptor switching&amp;lt;ref name=&amp;quot;PMID: 25972533&amp;quot; /&amp;gt;. The &amp;lt;scene name=&#039;76/761695/Lamp1bindingsite/15&#039;&amp;gt;histidine triad&amp;lt;/scene&amp;gt; is critical in forming a &amp;lt;scene name=&#039;76/761695/Lamp1bindingsite/16&#039;&amp;gt;binding site&amp;lt;/scene&amp;gt; for LAMP1&amp;lt;ref name=&amp;quot;PMID: 27605678&amp;quot;&amp;gt;PMID: 27605678 &amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 28448640&amp;quot;&amp;gt;PMID: 28448640 &amp;lt;/ref&amp;gt;.&lt;br /&gt;
==Resources==&lt;br /&gt;
For more information on this protein structure visit the following sites: [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4zjf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4zjf OCA], [http://pdbe.org/4zjf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4zjf RCSB], [http://www.ebi.ac.uk/pdbsum/4zjf PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4zjf ProSAT]&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
== References ==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;br /&gt;
[[Category: Cohen, N]]&lt;br /&gt;
[[Category: Cohen-Dvashi, H]]&lt;br /&gt;
[[Category: Diskin, R]]&lt;br /&gt;
[[Category: Israeli, H]]&lt;br /&gt;
[[Category: Arenavirus]]&lt;br /&gt;
[[Category: Glycoprotein]]&lt;br /&gt;
[[Category: Lassa]]&lt;br /&gt;
[[Category: LASV]]&lt;br /&gt;
[[Category: Receptor binding]]&lt;br /&gt;
[[Category: Viral protein]]&lt;br /&gt;
[[Category: 4zjf]]&lt;br /&gt;
[[Category: GP1]]&lt;/div&gt;</summary>
		<author><name>Rebecca Holstein</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=GP1_of_Lassa_Virus&amp;diff=2760801</id>
		<title>GP1 of Lassa Virus</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=GP1_of_Lassa_Virus&amp;diff=2760801"/>
		<updated>2017-08-28T03:42:07Z</updated>

		<summary type="html">&lt;p&gt;Rebecca Holstein: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;StructureSection load=&#039;4zjf&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;4ZJF structure&#039; scene=&#039;76/761695/4zjf_chaina/4&#039;&amp;gt;&lt;br /&gt;
==Importance==&lt;br /&gt;
Lassa virus (LASV), an Old World (OW) [http://en.wikipedia.org/wiki/Arenavirus arenavirus], is a notorious disease-causing agent primarily in West Africa that is able to spread from rodents to humans. This deadly pathogen causes severe viral hemorrhagic fevers and significant mortality. So far, there are no available vaccines for LASV, and only one successful vaccine against another virus found in the &#039;&#039;Arenaviridae&#039;&#039; family: Junin virus&amp;lt;ref name=&amp;quot;PMID: 9466512&amp;quot;&amp;gt;PMID: 9466512 &amp;lt;/ref&amp;gt;. Structural data at atomic resolution for viral proteins are laying the foundation for better understanding both the biology behind viral proteins and ways to combat against them. Determining the structure of the complete trimeric glycoprotein complex (GPC), composed of GP1, GP2, and SSP (stable signal peptide), will pave the path towards a future discovery of novel antiviral drugs. This is the first representative structure for OW arenaviruses. This structure reveals the overall architecture of GP1 domains from OW arenaviruses and important information relating to the mechanisms for pH switching and the binding of LASV to [[LAMP1]] (Lysosome-associated membrane glycoprotein), a recently identified host receptor that is critical for successful infection. In addition, structural analysis suggests two novel immune evasion mechanisms that LASV may utilize to escape antibody-based immune response.&lt;br /&gt;
== Function ==&lt;br /&gt;
&#039;&#039;&#039;GP1&#039;&#039;&#039; (Glycoprotein 1) is the receptor binding domain of LASV that mediates receptor recognition. Research thus far indicates that GP1 from LASV may undergo irreversible conformational changes that could serve as an immunological decoy mechanism. Arenaviruses utilize various cell surface proteins as their cellular receptors for recognizing and attaching to target cells. New World (NW) arenaviruses that belong to clades A and B use transferrin receptor 1 (TfR1)&amp;lt;ref name=&amp;quot;PMID:17287727&amp;quot;&amp;gt;PMID:17287727&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID:24920811&amp;quot;&amp;gt;PMID:24920811&amp;lt;/ref&amp;gt;, whereas OW arenaviruses, as well as clade C NW arenaviruses, use α-dystroglycan (α-DG) &amp;lt;ref name=&amp;quot;PMID:9851928&amp;quot;&amp;gt;PMID:9851928&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID:15857984&amp;quot;&amp;gt;PMID:15857984&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID:11967329&amp;quot;&amp;gt;PMID:11967329&amp;lt;/ref&amp;gt;. A trimeric class 1 viral glycoprotein complex (the spike complex) recognizes the cellular receptors and mediates membrane fusion upon exposure to low pH at the lysosome &amp;lt;ref name=&amp;quot;PMID:16731928&amp;quot;&amp;gt;PMID:16731928&amp;lt;/ref&amp;gt;. The spike complex is expressed as a glycoprotein precursor that is cleaved into three segments by a signal peptidase and SKI-1/S1P protease&amp;lt;ref name=&amp;quot;PMID:21612810&amp;quot;&amp;gt;PMID:21612810&amp;lt;/ref&amp;gt;. The functional spike complex consists of GP1, a membrane-anchored fusion protein (GP2), and a unique structured SSP &amp;lt;ref name=&amp;quot;PMID:23202458&amp;quot;&amp;gt;PMID:23202458&amp;lt;/ref&amp;gt;.                                                                                                                                                                                                                                                                                                                                                                                         &lt;br /&gt;
==Structural Highlights==&lt;br /&gt;
GP1 of LASV is a single chain structure with attached &amp;lt;scene name=&#039;76/761695/Nag/4&#039;&amp;gt;NAG&amp;lt;/scene&amp;gt; glycans. The overall architecture of GP1 features a central β-sheet and two distinct halves: a glycosylated half containing the receptor-binding site that is made mostly by the central β-sheet and surrounding loops and a half that contains mostly helices and most likely faces the trimer axis&amp;lt;ref name=&amp;quot;PMID: 25972533&amp;quot;&amp;gt;PMID: 25972533&amp;lt;/ref&amp;gt;, as determined in the Diskin laboratory at the Weizmann Institute of Science. The method used to determine this structure was [http://en.wikipedia.org/wiki/X-ray_crystallography X-ray diffraction]&lt;br /&gt;
===LAMP1 Binding Site===&lt;br /&gt;
The primary cellular receptor of LASV is α-dystroglycan (α-DG)&amp;lt;ref name=&amp;quot;PMID: 9851928&amp;quot;&amp;gt;PMID: 9851928&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 15857984&amp;quot;&amp;gt;PMID: 15857984&amp;lt;/ref&amp;gt;, which is recognized by a trimeric class 1 viral GPC (spike complex) on the viral surface&amp;lt;ref name=&amp;quot;PMID: 16731928&amp;quot;&amp;gt;PMID: 16731928&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 26849049&amp;quot;&amp;gt;PMID: 26849049&amp;lt;/ref&amp;gt;. Following successful attachment to α-DG on cells, LASV is internalized via [http://en.wikipedia.org/wiki/Pinocytosis macropinocytosis]&amp;lt;ref name=&amp;quot;PMID: 27147735&amp;quot;&amp;gt;PMID: 27147735&amp;lt;/ref&amp;gt;, and the GPC facilitates membrane fusion at the acidic environment of a late endosomal compartment&amp;lt;ref name=&amp;quot;PMID: 16731928&amp;quot;&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 21931550&amp;quot;&amp;gt;PMID: 21931550 &amp;lt;/ref&amp;gt;. Recent studies have shown that successful infection by LASV requires it to switch in a pH-dependent manner from α-DG to LAMP1&amp;lt;ref name=&amp;quot;PMID: 27605678&amp;quot; /&amp;gt;&amp;lt;ref name=&amp;quot;PMID:24970085&amp;quot;&amp;gt;PMID:24970085&amp;lt;/ref&amp;gt;. Binding of the &amp;lt;scene name=&#039;76/761695/Lamp1bindingsite/14&#039;&amp;gt;LAMP1&amp;lt;/scene&amp;gt; endosomal compartment triggers the spikes.&lt;br /&gt;
=== Histidine Triad===&lt;br /&gt;
Included in this structure is a unique &amp;lt;scene name=&#039;76/761695/Histriad/9&#039;&amp;gt;triad of histidines&amp;lt;/scene&amp;gt; that is highly conserved among OW arenaviruses. Located on the β-sheet face of GP1,  the histidine triad is a structural element that directly interacts with LAMP1 and helps stabilize a LAMP1-&amp;quot;compatible&amp;quot; conformation by providing a molecular mechanism for the pH-dependent receptor switching&amp;lt;ref name=&amp;quot;PMID: 25972533&amp;quot; /&amp;gt;. The &amp;lt;scene name=&#039;76/761695/Lamp1bindingsite/15&#039;&amp;gt;histidine triad&amp;lt;/scene&amp;gt; is critical in forming a &amp;lt;scene name=&#039;76/761695/Lamp1bindingsite/16&#039;&amp;gt;binding site&amp;lt;/scene&amp;gt; for LAMP1&amp;lt;ref name=&amp;quot;PMID: 27605678&amp;quot;&amp;gt;PMID: 27605678 &amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 28448640&amp;quot;&amp;gt;PMID: 28448640 &amp;lt;/ref&amp;gt;.&lt;br /&gt;
==Resources==&lt;br /&gt;
For more information on this protein structure visit the following sites: [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4zjf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4zjf OCA], [http://pdbe.org/4zjf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4zjf RCSB], [http://www.ebi.ac.uk/pdbsum/4zjf PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4zjf ProSAT]&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
== References ==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;br /&gt;
[[Category: Cohen, N]]&lt;br /&gt;
[[Category: Cohen-Dvashi, H]]&lt;br /&gt;
[[Category: Diskin, R]]&lt;br /&gt;
[[Category: Israeli, H]]&lt;br /&gt;
[[Category: Arenavirus]]&lt;br /&gt;
[[Category: Glycoprotein]]&lt;br /&gt;
[[Category: Lassa]]&lt;br /&gt;
[[Category: LASV]]&lt;br /&gt;
[[Category: Receptor binding]]&lt;br /&gt;
[[Category: Viral protein]]&lt;br /&gt;
[[Category: 4zjf]]&lt;br /&gt;
[[Category: GP1]]&lt;/div&gt;</summary>
		<author><name>Rebecca Holstein</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=GP1_of_Lassa_Virus&amp;diff=2760800</id>
		<title>GP1 of Lassa Virus</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=GP1_of_Lassa_Virus&amp;diff=2760800"/>
		<updated>2017-08-28T03:41:28Z</updated>

		<summary type="html">&lt;p&gt;Rebecca Holstein: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;StructureSection load=&#039;4zjf&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;4ZJF structure&#039; scene=&#039;76/761695/4zjf_chaina/4&#039;&amp;gt;&lt;br /&gt;
==Importance==&lt;br /&gt;
Lassa virus (LASV), an Old World (OW) [http://en.wikipedia.org/wiki/Arenavirus arenavirus], is a notorious disease-causing agent primarily in West Africa that is able to spread from rodents to humans. This deadly pathogen causes severe viral hemorrhagic fevers and significant mortality. So far, there are no available vaccines for LASV, and only one successful vaccine against another virus found in the &#039;&#039;Arenaviridae&#039;&#039; family: Junin virus&amp;lt;ref name=&amp;quot;PMID: 9466512&amp;quot;&amp;gt;PMID: 9466512 &amp;lt;/ref&amp;gt;. Structural data at atomic resolution for viral proteins are laying the foundation for better understanding both the biology behind viral proteins and ways to combat against them. Determining the structure of the complete trimeric glycoprotein complex (GPC), composed of GP1, GP2, and SSP (stable signal peptide), will pave the path towards a future discovery of novel antiviral drugs. This is the first representative structure for OW arenaviruses. This structure reveals the overall architecture of GP1 domains from OW arenaviruses and important information relating to the mechanisms for pH switching and the binding of LASV to [[LAMP1]] (Lysosome-associated membrane glycoprotein), a recently identified host receptor that is critical for successful infection. In addition, structural analysis suggests two novel immune evasion mechanisms that LASV may utilize to escape antibody-based immune response.&lt;br /&gt;
== Function ==&lt;br /&gt;
&#039;&#039;&#039;GP1&#039;&#039;&#039; (Glycoprotein 1) is the receptor binding domain of LASV that mediates receptor recognition. Research thus far indicates that GP1 from LASV may undergo irreversible conformational changes that could serve as an immunological decoy mechanism. Arenaviruses utilize various cell surface proteins as their cellular receptors for recognizing and attaching to target cells. New World (NW) arenaviruses that belong to clades A and B use transferrin receptor 1 (TfR1)&amp;lt;ref name=&amp;quot;PMID:17287727&amp;quot;&amp;gt;PMID:17287727&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID:24920811&amp;quot;&amp;gt;PMID:24920811&amp;lt;/ref&amp;gt;, whereas OW arenaviruses, as well as clade C NW arenaviruses, use α-dystroglycan (α-DG) &amp;lt;ref name=&amp;quot;PMID:9851928&amp;quot;&amp;gt;PMID:9851928&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID:15857984&amp;quot;&amp;gt;PMID:15857984&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID:11967329&amp;quot;&amp;gt;PMID:11967329&amp;lt;/ref&amp;gt;. A trimeric class 1 viral glycoprotein complex (the spike complex) recognizes the cellular receptors and mediates membrane fusion upon exposure to low pH at the lysosome &amp;lt;ref name=&amp;quot;PMID:16731928&amp;quot;&amp;gt;PMID:16731928&amp;lt;/ref&amp;gt;. The spike complex is expressed as a glycoprotein precursor that is cleaved into three segments by a signal peptidase and SKI-1/S1P protease&amp;lt;ref name=&amp;quot;PMID:21612810&amp;quot;&amp;gt;PMID:21612810&amp;lt;/ref&amp;gt;. The functional spike complex consists of GP1, a membrane-anchored fusion protein (GP2), and a unique structured SSP &amp;lt;ref name=&amp;quot;PMID:23202458&amp;quot;&amp;gt;PMID:23202458&amp;lt;/ref&amp;gt;.                                                                                                                                                                                                                                                                                                                                                                                         &lt;br /&gt;
==Structural Highlights==&lt;br /&gt;
GP1 of LASV is a single chain structure with attached &amp;lt;scene name=&#039;76/761695/Nag/4&#039;&amp;gt;NAG&amp;lt;/scene&amp;gt; glycans. The overall architecture of GP1 features a central β-sheet and two distinct halves: a glycosylated half containing the receptor-binding site that is made mostly by the central β-sheet and surrounding loops and a half that contains mostly helices and most likely faces the trimer axis&amp;lt;ref name=&amp;quot;PMID: 25972533&amp;quot;&amp;gt;PMID: 25972533&amp;lt;/ref&amp;gt;, as determined in the Diskin laboratory at the Weizmann Institute of Science.. The method used to determine this structure was [http://en.wikipedia.org/wiki/X-ray_crystallography X-ray diffraction]&lt;br /&gt;
===LAMP1 Binding Site===&lt;br /&gt;
The primary cellular receptor of LASV is α-dystroglycan (α-DG)&amp;lt;ref name=&amp;quot;PMID: 9851928&amp;quot;&amp;gt;PMID: 9851928&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 15857984&amp;quot;&amp;gt;PMID: 15857984&amp;lt;/ref&amp;gt;, which is recognized by a trimeric class 1 viral GPC (spike complex) on the viral surface&amp;lt;ref name=&amp;quot;PMID: 16731928&amp;quot;&amp;gt;PMID: 16731928&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 26849049&amp;quot;&amp;gt;PMID: 26849049&amp;lt;/ref&amp;gt;. Following successful attachment to α-DG on cells, LASV is internalized via [http://en.wikipedia.org/wiki/Pinocytosis macropinocytosis]&amp;lt;ref name=&amp;quot;PMID: 27147735&amp;quot;&amp;gt;PMID: 27147735&amp;lt;/ref&amp;gt;, and the GPC facilitates membrane fusion at the acidic environment of a late endosomal compartment&amp;lt;ref name=&amp;quot;PMID: 16731928&amp;quot;&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 21931550&amp;quot;&amp;gt;PMID: 21931550 &amp;lt;/ref&amp;gt;. Recent studies have shown that successful infection by LASV requires it to switch in a pH-dependent manner from α-DG to LAMP1&amp;lt;ref name=&amp;quot;PMID: 27605678&amp;quot; /&amp;gt;&amp;lt;ref name=&amp;quot;PMID:24970085&amp;quot;&amp;gt;PMID:24970085&amp;lt;/ref&amp;gt;. Binding of the &amp;lt;scene name=&#039;76/761695/Lamp1bindingsite/14&#039;&amp;gt;LAMP1&amp;lt;/scene&amp;gt; endosomal compartment triggers the spikes.&lt;br /&gt;
=== Histidine Triad===&lt;br /&gt;
Included in this structure is a unique &amp;lt;scene name=&#039;76/761695/Histriad/9&#039;&amp;gt;triad of histidines&amp;lt;/scene&amp;gt; that is highly conserved among OW arenaviruses. Located on the β-sheet face of GP1,  the histidine triad is a structural element that directly interacts with LAMP1 and helps stabilize a LAMP1-&amp;quot;compatible&amp;quot; conformation by providing a molecular mechanism for the pH-dependent receptor switching&amp;lt;ref name=&amp;quot;PMID: 25972533&amp;quot; /&amp;gt;. The &amp;lt;scene name=&#039;76/761695/Lamp1bindingsite/15&#039;&amp;gt;histidine triad&amp;lt;/scene&amp;gt; is critical in forming a &amp;lt;scene name=&#039;76/761695/Lamp1bindingsite/16&#039;&amp;gt;binding site&amp;lt;/scene&amp;gt; for LAMP1&amp;lt;ref name=&amp;quot;PMID: 27605678&amp;quot;&amp;gt;PMID: 27605678 &amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 28448640&amp;quot;&amp;gt;PMID: 28448640 &amp;lt;/ref&amp;gt;.&lt;br /&gt;
==Resources==&lt;br /&gt;
For more information on this protein structure visit the following sites: [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4zjf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4zjf OCA], [http://pdbe.org/4zjf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4zjf RCSB], [http://www.ebi.ac.uk/pdbsum/4zjf PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4zjf ProSAT]&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
== References ==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;br /&gt;
[[Category: Cohen, N]]&lt;br /&gt;
[[Category: Cohen-Dvashi, H]]&lt;br /&gt;
[[Category: Diskin, R]]&lt;br /&gt;
[[Category: Israeli, H]]&lt;br /&gt;
[[Category: Arenavirus]]&lt;br /&gt;
[[Category: Glycoprotein]]&lt;br /&gt;
[[Category: Lassa]]&lt;br /&gt;
[[Category: LASV]]&lt;br /&gt;
[[Category: Receptor binding]]&lt;br /&gt;
[[Category: Viral protein]]&lt;br /&gt;
[[Category: 4zjf]]&lt;br /&gt;
[[Category: GP1]]&lt;/div&gt;</summary>
		<author><name>Rebecca Holstein</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=GP1_of_Lassa_Virus&amp;diff=2760794</id>
		<title>GP1 of Lassa Virus</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=GP1_of_Lassa_Virus&amp;diff=2760794"/>
		<updated>2017-08-26T22:24:27Z</updated>

		<summary type="html">&lt;p&gt;Rebecca Holstein: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;StructureSection load=&#039;4zjf&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;4ZJF structure&#039; scene=&#039;76/761695/4zjf_chaina/4&#039;&amp;gt;&lt;br /&gt;
==Importance==&lt;br /&gt;
Lassa virus (LASV), an Old World (OW) [http://en.wikipedia.org/wiki/Arenavirus arenavirus], is a notorious disease-causing agent primarily in West Africa that is able to spread from rodents to humans. This deadly pathogen causes severe viral hemorrhagic fevers and significant mortality. So far, there are no available vaccines for LASV, and only one successful vaccine against another virus found in the &#039;&#039;Arenaviridae&#039;&#039; family: Junin virus&amp;lt;ref name=&amp;quot;PMID: 9466512&amp;quot;&amp;gt;PMID: 9466512 &amp;lt;/ref&amp;gt;. Structural data at atomic resolution for viral proteins are laying the foundation for better understanding both the biology behind viral proteins and ways to combat against them. Determining the structure of the complete trimeric glycoprotein complex (GPC), composed of GP1, GP2, and SSP (stable signal peptide), will pave the path towards a future discovery of novel antiviral drugs. This is the first representative structure for OW arenaviruses. This structure reveals the overall architecture of GP1 domains from OW arenaviruses and important information relating to the mechanisms for pH switching and the binding of LASV to [[LAMP1]] (Lysosome-associated membrane glycoprotein), a recently identified host receptor that is critical for successful infection. In addition, structural analysis suggests two novel immune evasion mechanisms that LASV may utilize to escape antibody-based immune response.&lt;br /&gt;
== Function ==&lt;br /&gt;
&#039;&#039;&#039;GP1&#039;&#039;&#039; (Glycoprotein 1) is the receptor binding domain of LASV that mediates receptor recognition. Research thus far indicates that GP1 from LASV may undergo irreversible conformational changes that could serve as an immunological decoy mechanism. Arenaviruses utilize various cell surface proteins as their cellular receptors for recognizing and attaching to target cells. New World (NW) arenaviruses that belong to clades A and B use transferrin receptor 1 (TfR1)&amp;lt;ref name=&amp;quot;PMID:17287727&amp;quot;&amp;gt;PMID:17287727&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID:24920811&amp;quot;&amp;gt;PMID:24920811&amp;lt;/ref&amp;gt;, whereas OW arenaviruses, as well as clade C NW arenaviruses, use α-dystroglycan (α-DG) &amp;lt;ref name=&amp;quot;PMID:9851928&amp;quot;&amp;gt;PMID:9851928&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID:15857984&amp;quot;&amp;gt;PMID:15857984&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID:11967329&amp;quot;&amp;gt;PMID:11967329&amp;lt;/ref&amp;gt;. A trimeric class 1 viral glycoprotein complex (the spike complex) recognizes the cellular receptors and mediates membrane fusion upon exposure to low pH at the lysosome &amp;lt;ref name=&amp;quot;PMID:16731928&amp;quot;&amp;gt;PMID:16731928&amp;lt;/ref&amp;gt;. The spike complex is expressed as a glycoprotein precursor that is cleaved into three segments by a signal peptidase and SKI-1/S1P protease&amp;lt;ref name=&amp;quot;PMID:21612810&amp;quot;&amp;gt;PMID:21612810&amp;lt;/ref&amp;gt;. The functional spike complex consists of GP1, a membrane-anchored fusion protein (GP2), and a unique structured SSP &amp;lt;ref name=&amp;quot;PMID:23202458&amp;quot;&amp;gt;PMID:23202458&amp;lt;/ref&amp;gt;.                                                                                                                                                                                                                                                                                                                                                                                         &lt;br /&gt;
==Structural Highlights==&lt;br /&gt;
GP1 of LASV is a single chain structure with attached &amp;lt;scene name=&#039;76/761695/Nag/4&#039;&amp;gt;NAG&amp;lt;/scene&amp;gt; glycans. The overall architecture of GP1 features a central β-sheet and two distinct halves: a glycosylated half containing the receptor-binding site that is made mostly by the central β-sheet and surrounding loops and a half that contains mostly helices and most likely faces the trimer axis&amp;lt;ref name=&amp;quot;PMID: 25972533&amp;quot;&amp;gt;PMID: 25972533&amp;lt;/ref&amp;gt;. The method used to determine this structure was [http://en.wikipedia.org/wiki/X-ray_crystallography X-ray diffraction]&lt;br /&gt;
===LAMP1 Binding Site===&lt;br /&gt;
The primary cellular receptor of LASV is α-dystroglycan (α-DG)&amp;lt;ref name=&amp;quot;PMID: 9851928&amp;quot;&amp;gt;PMID: 9851928&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 15857984&amp;quot;&amp;gt;PMID: 15857984&amp;lt;/ref&amp;gt;, which is recognized by a trimeric class 1 viral GPC (spike complex) on the viral surface&amp;lt;ref name=&amp;quot;PMID: 16731928&amp;quot;&amp;gt;PMID: 16731928&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 26849049&amp;quot;&amp;gt;PMID: 26849049&amp;lt;/ref&amp;gt;. Following successful attachment to α-DG on cells, LASV is internalized via [http://en.wikipedia.org/wiki/Pinocytosis macropinocytosis]&amp;lt;ref name=&amp;quot;PMID: 27147735&amp;quot;&amp;gt;PMID: 27147735&amp;lt;/ref&amp;gt;, and the GPC facilitates membrane fusion at the acidic environment of a late endosomal compartment&amp;lt;ref name=&amp;quot;PMID: 16731928&amp;quot;&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 21931550&amp;quot;&amp;gt;PMID: 21931550 &amp;lt;/ref&amp;gt;. Recent studies have shown that successful infection by LASV requires it to switch in a pH-dependent manner from α-DG to LAMP1&amp;lt;ref name=&amp;quot;PMID: 27605678&amp;quot; /&amp;gt;&amp;lt;ref name=&amp;quot;PMID:24970085&amp;quot;&amp;gt;PMID:24970085&amp;lt;/ref&amp;gt;. Binding of the &amp;lt;scene name=&#039;76/761695/Lamp1bindingsite/14&#039;&amp;gt;LAMP1&amp;lt;/scene&amp;gt; endosomal compartment triggers the spikes.&lt;br /&gt;
=== Histidine Triad===&lt;br /&gt;
Included in this structure is a unique &amp;lt;scene name=&#039;76/761695/Histriad/9&#039;&amp;gt;triad of histidines&amp;lt;/scene&amp;gt; that is highly conserved among OW arenaviruses. Located on the β-sheet face of GP1,  the histidine triad is a structural element that directly interacts with LAMP1 and helps stabilize a LAMP1-&amp;quot;compatible&amp;quot; conformation by providing a molecular mechanism for the pH-dependent receptor switching&amp;lt;ref name=&amp;quot;PMID: 25972533&amp;quot; /&amp;gt;. The &amp;lt;scene name=&#039;76/761695/Lamp1bindingsite/15&#039;&amp;gt;histidine triad&amp;lt;/scene&amp;gt; is critical in forming a &amp;lt;scene name=&#039;76/761695/Lamp1bindingsite/16&#039;&amp;gt;binding site&amp;lt;/scene&amp;gt; for LAMP1&amp;lt;ref name=&amp;quot;PMID: 27605678&amp;quot;&amp;gt;PMID: 27605678 &amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 28448640&amp;quot;&amp;gt;PMID: 28448640 &amp;lt;/ref&amp;gt;.&lt;br /&gt;
==Resources==&lt;br /&gt;
For more information on this protein structure visit the following sites: [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4zjf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4zjf OCA], [http://pdbe.org/4zjf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4zjf RCSB], [http://www.ebi.ac.uk/pdbsum/4zjf PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4zjf ProSAT]&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
== References ==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;br /&gt;
[[Category: Cohen, N]]&lt;br /&gt;
[[Category: Cohen-Dvashi, H]]&lt;br /&gt;
[[Category: Diskin, R]]&lt;br /&gt;
[[Category: Israeli, H]]&lt;br /&gt;
[[Category: Arenavirus]]&lt;br /&gt;
[[Category: Glycoprotein]]&lt;br /&gt;
[[Category: Lassa]]&lt;br /&gt;
[[Category: LASV]]&lt;br /&gt;
[[Category: Receptor binding]]&lt;br /&gt;
[[Category: Viral protein]]&lt;br /&gt;
[[Category: 4zjf]]&lt;br /&gt;
[[Category: GP1]]&lt;/div&gt;</summary>
		<author><name>Rebecca Holstein</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=GP1_of_Lassa_Virus&amp;diff=2760793</id>
		<title>GP1 of Lassa Virus</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=GP1_of_Lassa_Virus&amp;diff=2760793"/>
		<updated>2017-08-26T22:21:19Z</updated>

		<summary type="html">&lt;p&gt;Rebecca Holstein: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;StructureSection load=&#039;4zjf&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;4ZJF structure&#039; scene=&#039;76/761695/4zjf_chaina/4&#039;&amp;gt;&lt;br /&gt;
==Importance==&lt;br /&gt;
Lassa virus (LASV), an Old World (OW) [http://en.wikipedia.org/wiki/Arenavirus arenavirus], is a notorious disease-causing agent primarily in West Africa that is able to spread from rodents to humans. This deadly pathogen causes severe viral hemorrhagic fevers and significant mortality. So far, there are no available vaccines for LASV, and only one successful vaccine against another virus found in the &#039;&#039;Arenaviridae&#039;&#039; family: Junin virus&amp;lt;ref name=&amp;quot;PMID: 9466512&amp;quot;&amp;gt;PMID: 9466512 &amp;lt;/ref&amp;gt;. Structural data at atomic resolution for viral proteins are laying the foundation for better understanding both the biology behind viral proteins and ways to combat against them. Determining the structure of the complete trimeric glycoprotein complex (GPC), composed of GP1, GP2, and SSP (stable signal peptide), will pave the path towards a future discovery of novel antiviral drugs. This is the first representative structure for OW arenaviruses. This structure reveals the overall architecture of GP1 domains from OW arenaviruses and important information relating to the mechanisms for pH switching and the binding of LASV to [[LAMP1]] (Lysosome-associated membrane glycoprotein), a recently identified host receptor that is critical for successful infection. In addition, structural analysis suggests two novel immune evasion mechanisms that LASV may utilize to escape antibody-based immune response.&lt;br /&gt;
== Function ==&lt;br /&gt;
&#039;&#039;&#039;GP1&#039;&#039;&#039; (Glycoprotein 1) is the receptor binding domain of LASV that mediates receptor recognition. Research thus far indicates that GP1 from LASV may undergo irreversible conformational changes that could serve as an immunological decoy mechanism. Arenaviruses utilize various cell surface proteins as their cellular receptors for recognizing and attaching to target cells. New World (NW) arenaviruses that belong to clades A and B use transferrin receptor 1 (TfR1)&amp;lt;ref name=&amp;quot;PMID:17287727&amp;quot;&amp;gt;PMID:17287727&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID:24920811&amp;quot;&amp;gt;PMID:24920811&amp;lt;/ref&amp;gt;, whereas OW arenaviruses, as well as clade C NW arenaviruses, use α-dystroglycan (α-DG) &amp;lt;ref name=&amp;quot;PMID:9851928&amp;quot;&amp;gt;PMID:9851928&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID:15857984&amp;quot;&amp;gt;PMID:15857984&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID:11967329&amp;quot;&amp;gt;PMID:11967329&amp;lt;/ref&amp;gt;. A trimeric class 1 viral glycoprotein complex (the spike complex) recognizes the cellular receptors and mediates membrane fusion upon exposure to low pH at the lysosome &amp;lt;ref name=&amp;quot;PMID:16731928&amp;quot;&amp;gt;PMID:16731928&amp;lt;/ref&amp;gt;. The spike complex is expressed as a glycoprotein precursor that is cleaved into three segments by a signal peptidase and SKI-1/S1P protease&amp;lt;ref name=&amp;quot;PMID:21612810&amp;quot;&amp;gt;PMID:21612810&amp;lt;/ref&amp;gt;. The functional spike complex consists of GP1, a membrane-anchored fusion protein (GP2), and a unique structured SSP &amp;lt;ref name=&amp;quot;PMID:23202458&amp;quot;&amp;gt;PMID:23202458&amp;lt;/ref&amp;gt;.                                                                                                                                                                                                                                                                                                                                                                                         &lt;br /&gt;
==Structural Highlights==&lt;br /&gt;
GP1 of LASV is a single chain structure with attached &amp;lt;scene name=&#039;76/761695/Nag/4&#039;&amp;gt;NAG&amp;lt;/scene&amp;gt; glycans. The overall architecture of GP1 features a central β-sheet and two distinct halves: a glycosylated half containing the receptor-binding site that is made mostly by the central β-sheet and surrounding loops and a half that contains mostly helices and most likely faces the trimer axis&amp;lt;ref name=&amp;quot;PMID: 25972533&amp;quot;&amp;gt;PMID: 25972533&amp;lt;/ref&amp;gt;. The method used to determine this structure was [http://en.wikipedia.org/wiki/X-ray_crystallography X-ray diffraction]&lt;br /&gt;
===LAMP1 Binding Site===&lt;br /&gt;
The primary cellular receptor of LASV is α-dystroglycan (α-DG)&amp;lt;ref name=&amp;quot;PMID: 9851928&amp;quot;&amp;gt;PMID: 9851928&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 15857984&amp;quot;&amp;gt;PMID: 15857984&amp;lt;/ref&amp;gt;, which is recognized by a trimeric class 1 viral GPC (spike complex) on the viral surface&amp;lt;ref name=&amp;quot;PMID: 16731928&amp;quot;&amp;gt;PMID: 16731928&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 26849049&amp;quot;&amp;gt;PMID: 26849049&amp;lt;/ref&amp;gt;. Following successful attachment to α-DG on cells, LASV is internalized via [http://en.wikipedia.org/wiki/Pinocytosis macropinocytosis]&amp;lt;ref name=&amp;quot;PMID: 27147735&amp;quot;&amp;gt;PMID: 27147735&amp;lt;/ref&amp;gt;, and the GPC facilitates membrane fusion at the acidic environment of a late endosomal compartment&amp;lt;ref name=&amp;quot;PMID: 16731928&amp;quot;&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 21931550&amp;quot;&amp;gt;PMID: 21931550 &amp;lt;/ref&amp;gt;. Recent studies have shown that successful infection by LASV requires it to switch in a pH-dependent manner from α-DG to LAMP1&amp;lt;ref name=&amp;quot;PMID: 27605678&amp;quot; /&amp;gt;&amp;lt;ref name=&amp;quot;PMID:24970085&amp;quot;&amp;gt;PMID:24970085&amp;lt;/ref&amp;gt;. Binding of the &amp;lt;scene name=&#039;76/761695/Lamp1bindingsite/14&#039;&amp;gt;LAMP1&amp;lt;/scene&amp;gt; endosomal compartment triggers the spikes.&lt;br /&gt;
=== Histidine Triad===&lt;br /&gt;
Included in this structure is a unique &amp;lt;scene name=&#039;76/761695/Histriad/9&#039;&amp;gt;triad of histidines&amp;lt;/scene&amp;gt; that is highly conserved among OW arenaviruses. Located on the β-sheet face of GP1,  the histidine triad is a structural element that directly interacts with LAMP1 and helps stabilize a LAMP1-&amp;quot;compatible&amp;quot; conformation by providing a molecular mechanism for the pH-dependent receptor switching&amp;lt;ref name=&amp;quot;PMID: 25972533&amp;quot; /&amp;gt;. The &amp;lt;scene name=&#039;76/761695/Lamp1bindingsite/15&#039;&amp;gt;histidine triad&amp;lt;/scene&amp;gt; is critical in forming a &amp;lt;scene name=&#039;76/761695/Lamp1bindingsite/16&#039;&amp;gt;binding site&amp;lt;/scene&amp;gt; for LAMP1&amp;lt;ref name=&amp;quot;PMID: 28448640&amp;quot;&amp;gt;PMID: 28448640 &amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 27605678&amp;quot;&amp;gt;PMID: 27605678 &amp;lt;/ref&amp;gt;.&lt;br /&gt;
==Resources==&lt;br /&gt;
For more information on this protein structure visit the following sites: [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4zjf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4zjf OCA], [http://pdbe.org/4zjf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4zjf RCSB], [http://www.ebi.ac.uk/pdbsum/4zjf PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4zjf ProSAT]&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
== References ==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;br /&gt;
[[Category: Cohen, N]]&lt;br /&gt;
[[Category: Cohen-Dvashi, H]]&lt;br /&gt;
[[Category: Diskin, R]]&lt;br /&gt;
[[Category: Israeli, H]]&lt;br /&gt;
[[Category: Arenavirus]]&lt;br /&gt;
[[Category: Glycoprotein]]&lt;br /&gt;
[[Category: Lassa]]&lt;br /&gt;
[[Category: LASV]]&lt;br /&gt;
[[Category: Receptor binding]]&lt;br /&gt;
[[Category: Viral protein]]&lt;br /&gt;
[[Category: 4zjf]]&lt;br /&gt;
[[Category: GP1]]&lt;/div&gt;</summary>
		<author><name>Rebecca Holstein</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=GP1_of_Lassa_Virus&amp;diff=2760792</id>
		<title>GP1 of Lassa Virus</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=GP1_of_Lassa_Virus&amp;diff=2760792"/>
		<updated>2017-08-26T22:15:23Z</updated>

		<summary type="html">&lt;p&gt;Rebecca Holstein: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;StructureSection load=&#039;4zjf&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;4ZJF structure&#039; scene=&#039;76/761695/4zjf_chaina/4&#039;&amp;gt;&lt;br /&gt;
==Importance==&lt;br /&gt;
Lassa virus (LASV), an Old World (OW) [http://en.wikipedia.org/wiki/Arenavirus arenavirus], is a notorious disease-causing agent primarily in West Africa that is able to spread from rodents to humans. This deadly pathogen causes severe viral hemorrhagic fevers and significant mortality. So far, there are no available vaccines for LASV, and only one successful vaccine against another virus found in the &#039;&#039;Arenaviridae&#039;&#039; family: Junin virus&amp;lt;ref name=&amp;quot;PMID: 9466512&amp;quot;&amp;gt;PMID: 9466512 &amp;lt;/ref&amp;gt;. Structural data at atomic resolution for viral proteins are laying the foundation for better understanding both the biology behind viral proteins and ways to combat against them. Determining the structure of the complete trimeric glycoprotein complex (GPC), composed of GP1, GP2, and SSP (stable signal peptide), will pave the path towards a future discovery of novel antiviral drugs. This is the first representative structure for OW arenaviruses. This structure reveals the overall architecture of GP1 domains from OW arenaviruses and important information relating to the mechanisms for pH switching and the binding of LASV to [[LAMP1]] (Lysosome-associated membrane glycoprotein), a recently identified host receptor that is critical for successful infection. In addition, structural analysis suggests two novel immune evasion mechanisms that LASV may utilize to escape antibody-based immune response.&lt;br /&gt;
== Function ==&lt;br /&gt;
&#039;&#039;&#039;GP1&#039;&#039;&#039; (Glycoprotein 1) is the receptor binding domain of LASV that mediates receptor recognition. Research thus far indicates that GP1 from LASV may undergo irreversible conformational changes that could serve as an immunological decoy mechanism. Arenaviruses utilize various cell surface proteins as their cellular receptors for recognizing and attaching to target cells. New World (NW) arenaviruses that belong to clades A and B use transferrin receptor 1 (TfR1)&amp;lt;ref name=&amp;quot;PMID:17287727&amp;quot;&amp;gt;PMID:17287727&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID:24920811&amp;quot;&amp;gt;PMID:24920811&amp;lt;/ref&amp;gt;, whereas OW arenaviruses, as well as clade C NW arenaviruses, use α-dystroglycan (α-DG) &amp;lt;ref name=&amp;quot;PMID:9851928&amp;quot;&amp;gt;PMID:9851928&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID:15857984&amp;quot;&amp;gt;PMID:15857984&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID:11967329&amp;quot;&amp;gt;PMID:11967329&amp;lt;/ref&amp;gt;. A trimeric class 1 viral glycoprotein complex (the spike complex) recognizes the cellular receptors and mediates membrane fusion upon exposure to low pH at the lysosome &amp;lt;ref name=&amp;quot;PMID:16731928&amp;quot;&amp;gt;PMID:16731928&amp;lt;/ref&amp;gt;. The spike complex is expressed as a glycoprotein precursor that is cleaved into three segments by a signal peptidase and SKI-1/S1P protease&amp;lt;ref name=&amp;quot;PMID:21612810&amp;quot;&amp;gt;PMID:21612810&amp;lt;/ref&amp;gt;. The functional spike complex consists of GP1, a membrane-anchored fusion protein (GP2), and a unique structured SSP &amp;lt;ref name=&amp;quot;PMID:23202458&amp;quot;&amp;gt;PMID:23202458&amp;lt;/ref&amp;gt;.                                                                                                                                                                                                                                                                                                                                                                                         &lt;br /&gt;
==Structural Highlights==&lt;br /&gt;
GP1 of LASV is a single chain structure with attached &amp;lt;scene name=&#039;76/761695/Nag/4&#039;&amp;gt;NAG&amp;lt;/scene&amp;gt; glycans. The overall architecture of GP1 features a central β-sheet and two distinct halves: a glycosylated half containing the receptor-binding site that is made mostly by the central β-sheet and surrounding loops and a half that contains mostly helices and most likely faces the trimer axis)&amp;lt;ref name=&amp;quot;PMID: 25972533&amp;quot;&amp;gt;PMID: 25972533&amp;lt;/ref&amp;gt;. The method used to determine this structure was [http://en.wikipedia.org/wiki/X-ray_crystallography X-ray diffraction]&lt;br /&gt;
===LAMP1 Binding Site===&lt;br /&gt;
The primary cellular receptor of LASV is α-dystroglycan (α-DG)&amp;lt;ref name=&amp;quot;PMID: 9851928&amp;quot;&amp;gt;PMID: 9851928&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 15857984&amp;quot;&amp;gt;PMID: 15857984&amp;lt;/ref&amp;gt;, which is recognized by a trimeric class 1 viral GPC (spike complex) on the viral surface&amp;lt;ref name=&amp;quot;PMID: 16731928&amp;quot;&amp;gt;PMID: 16731928&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 26849049&amp;quot;&amp;gt;PMID: 26849049&amp;lt;/ref&amp;gt;. Following successful attachment to α-DG on cells, LASV is internalized via [http://en.wikipedia.org/wiki/Pinocytosis macropinocytosis]&amp;lt;ref name=&amp;quot;PMID: 27147735&amp;quot;&amp;gt;PMID: 27147735&amp;lt;/ref&amp;gt;, and the GPC facilitates membrane fusion at the acidic environment of a late endosomal compartment&amp;lt;ref name=&amp;quot;PMID: 16731928&amp;quot;&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 21931550&amp;quot;&amp;gt;PMID: 21931550 &amp;lt;/ref&amp;gt;. Recent studies have shown that successful infection by LASV requires it to switch in a pH-dependent manner from α-DG to LAMP1&amp;lt;ref name=&amp;quot;PMID: 27605678&amp;quot; /&amp;gt;&amp;lt;ref name=&amp;quot;PMID:24970085&amp;quot;&amp;gt;PMID:24970085&amp;lt;/ref&amp;gt;. Binding of the &amp;lt;scene name=&#039;76/761695/Lamp1bindingsite/14&#039;&amp;gt;LAMP1&amp;lt;/scene&amp;gt; endosomal compartment triggers the spikes.&lt;br /&gt;
=== Histidine Triad===&lt;br /&gt;
Included in this structure is a unique &amp;lt;scene name=&#039;76/761695/Histriad/9&#039;&amp;gt;triad of histidines&amp;lt;/scene&amp;gt; that is highly conserved among OW arenaviruses. Located on the β-sheet face of GP1,  the histidine triad is a structural element that directly interacts with LAMP1 and helps stabilize a LAMP1-&amp;quot;compatible&amp;quot; conformation by providing a molecular mechanism for the pH-dependent receptor switching&amp;lt;ref name=&amp;quot;PMID: 25972533&amp;quot; /&amp;gt;. The &amp;lt;scene name=&#039;76/761695/Lamp1bindingsite/15&#039;&amp;gt;histidine triad&amp;lt;/scene&amp;gt; is critical in forming a &amp;lt;scene name=&#039;76/761695/Lamp1bindingsite/16&#039;&amp;gt;binding site&amp;lt;/scene&amp;gt; for LAMP1&amp;lt;ref name=&amp;quot;PMID: 28448640&amp;quot;&amp;gt;PMID: 28448640 &amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 27605678&amp;quot;&amp;gt;PMID: 27605678 &amp;lt;/ref&amp;gt;.&lt;br /&gt;
==Resources==&lt;br /&gt;
For more information on this protein structure visit the following sites: [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4zjf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4zjf OCA], [http://pdbe.org/4zjf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4zjf RCSB], [http://www.ebi.ac.uk/pdbsum/4zjf PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4zjf ProSAT]&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
== References ==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;br /&gt;
[[Category: Cohen, N]]&lt;br /&gt;
[[Category: Cohen-Dvashi, H]]&lt;br /&gt;
[[Category: Diskin, R]]&lt;br /&gt;
[[Category: Israeli, H]]&lt;br /&gt;
[[Category: Arenavirus]]&lt;br /&gt;
[[Category: Glycoprotein]]&lt;br /&gt;
[[Category: Lassa]]&lt;br /&gt;
[[Category: LASV]]&lt;br /&gt;
[[Category: Receptor binding]]&lt;br /&gt;
[[Category: Viral protein]]&lt;br /&gt;
[[Category: 4zjf]]&lt;br /&gt;
[[Category: GP1]]&lt;/div&gt;</summary>
		<author><name>Rebecca Holstein</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=GP1_of_Lassa_Virus&amp;diff=2760791</id>
		<title>GP1 of Lassa Virus</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=GP1_of_Lassa_Virus&amp;diff=2760791"/>
		<updated>2017-08-26T22:12:45Z</updated>

		<summary type="html">&lt;p&gt;Rebecca Holstein: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;StructureSection load=&#039;4zjf&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;4ZJF structure&#039; scene=&#039;76/761695/4zjf_chaina/3&#039;&amp;gt;&lt;br /&gt;
==Importance==&lt;br /&gt;
Lassa virus (LASV), an Old World (OW) [http://en.wikipedia.org/wiki/Arenavirus arenavirus], is a notorious disease-causing agent primarily in West Africa that is able to spread from rodents to humans. This deadly pathogen causes severe viral hemorrhagic fevers and significant mortality. So far, there are no available vaccines for LASV, and only one successful vaccine against another virus found in the &#039;&#039;Arenaviridae&#039;&#039; family: Junin virus&amp;lt;ref name=&amp;quot;PMID: 9466512&amp;quot;&amp;gt;PMID: 9466512 &amp;lt;/ref&amp;gt;. Structural data at atomic resolution for viral proteins are laying the foundation for better understanding both the biology behind viral proteins and ways to combat against them. Determining the structure of the complete trimeric glycoprotein complex (GPC), composed of GP1, GP2, and SSP (stable signal peptide), will pave the path towards a future discovery of novel antiviral drugs. This is the first representative structure for OW arenaviruses. This structure reveals the overall architecture of GP1 domains from OW arenaviruses and important information relating to the mechanisms for pH switching and the binding of LASV to [[LAMP1]] (Lysosome-associated membrane glycoprotein), a recently identified host receptor that is critical for successful infection. In addition, structural analysis suggests two novel immune evasion mechanisms that LASV may utilize to escape antibody-based immune response.&lt;br /&gt;
== Function ==&lt;br /&gt;
&#039;&#039;&#039;GP1&#039;&#039;&#039; (Glycoprotein 1) is the receptor binding domain of LASV that mediates receptor recognition. Research thus far indicates that GP1 from LASV may undergo irreversible conformational changes that could serve as an immunological decoy mechanism. Arenaviruses utilize various cell surface proteins as their cellular receptors for recognizing and attaching to target cells. New World (NW) arenaviruses that belong to clades A and B use transferrin receptor 1 (TfR1)&amp;lt;ref name=&amp;quot;PMID:17287727&amp;quot;&amp;gt;PMID:17287727&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID:24920811&amp;quot;&amp;gt;PMID:24920811&amp;lt;/ref&amp;gt;, whereas OW arenaviruses, as well as clade C NW arenaviruses, use α-dystroglycan (α-DG) &amp;lt;ref name=&amp;quot;PMID:9851928&amp;quot;&amp;gt;PMID:9851928&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID:15857984&amp;quot;&amp;gt;PMID:15857984&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID:11967329&amp;quot;&amp;gt;PMID:11967329&amp;lt;/ref&amp;gt;. A trimeric class 1 viral glycoprotein complex (the spike complex) recognizes the cellular receptors and mediates membrane fusion upon exposure to low pH at the lysosome &amp;lt;ref name=&amp;quot;PMID:16731928&amp;quot;&amp;gt;PMID:16731928&amp;lt;/ref&amp;gt;. The spike complex is expressed as a glycoprotein precursor that is cleaved into three segments by a signal peptidase and SKI-1/S1P protease&amp;lt;ref name=&amp;quot;PMID:21612810&amp;quot;&amp;gt;PMID:21612810&amp;lt;/ref&amp;gt;. The functional spike complex consists of GP1, a membrane-anchored fusion protein (GP2), and a unique structured SSP &amp;lt;ref name=&amp;quot;PMID:23202458&amp;quot;&amp;gt;PMID:23202458&amp;lt;/ref&amp;gt;.                                                                                                                                                                                                                                                                                                                                                                                         &lt;br /&gt;
==Structural Highlights==&lt;br /&gt;
GP1 of LASV is a single chain structure with attached &amp;lt;scene name=&#039;76/761695/Nag/4&#039;&amp;gt;NAG&amp;lt;/scene&amp;gt; glycans. The overall architecture of GP1 features a central β-sheet and two distinct halves: a glycosylated half containing the receptor-binding site that is made mostly by the central β-sheet and surrounding loops and a half that contains mostly helices and most likely faces the trimer axis)&amp;lt;ref name=&amp;quot;PMID: 25972533&amp;quot;&amp;gt;PMID: 25972533&amp;lt;/ref&amp;gt;. The method used to determine this structure was [http://en.wikipedia.org/wiki/X-ray_crystallography X-ray diffraction]&lt;br /&gt;
===LAMP1 Binding Site===&lt;br /&gt;
The primary cellular receptor of LASV is α-dystroglycan (α-DG)&amp;lt;ref name=&amp;quot;PMID: 9851928&amp;quot;&amp;gt;PMID: 9851928&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 15857984&amp;quot;&amp;gt;PMID: 15857984&amp;lt;/ref&amp;gt;, which is recognized by a trimeric class 1 viral GPC (spike complex) on the viral surface&amp;lt;ref name=&amp;quot;PMID: 16731928&amp;quot;&amp;gt;PMID: 16731928&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 26849049&amp;quot;&amp;gt;PMID: 26849049&amp;lt;/ref&amp;gt;. Following successful attachment to α-DG on cells, LASV is internalized via [http://en.wikipedia.org/wiki/Pinocytosis macropinocytosis]&amp;lt;ref name=&amp;quot;PMID: 27147735&amp;quot;&amp;gt;PMID: 27147735&amp;lt;/ref&amp;gt;, and the GPC facilitates membrane fusion at the acidic environment of a late endosomal compartment&amp;lt;ref name=&amp;quot;PMID: 16731928&amp;quot;&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 21931550&amp;quot;&amp;gt;PMID: 21931550 &amp;lt;/ref&amp;gt;. Recent studies have shown that successful infection by LASV requires it to switch in a pH-dependent manner from α-DG to LAMP1&amp;lt;ref name=&amp;quot;PMID: 27605678&amp;quot; /&amp;gt;&amp;lt;ref name=&amp;quot;PMID:24970085&amp;quot;&amp;gt;PMID:24970085&amp;lt;/ref&amp;gt;. Binding of the &amp;lt;scene name=&#039;76/761695/Lamp1bindingsite/14&#039;&amp;gt;LAMP1&amp;lt;/scene&amp;gt; endosomal compartment triggers the spikes.&lt;br /&gt;
=== Histidine Triad===&lt;br /&gt;
Included in this structure is a unique &amp;lt;scene name=&#039;76/761695/Histriad/9&#039;&amp;gt;triad of histidines&amp;lt;/scene&amp;gt; that is highly conserved among OW arenaviruses. Located on the β-sheet face of GP1,  the histidine triad is a structural element that directly interacts with LAMP1 and helps stabilize a LAMP1-&amp;quot;compatible&amp;quot; conformation by providing a molecular mechanism for the pH-dependent receptor switching&amp;lt;ref name=&amp;quot;PMID: 25972533&amp;quot; /&amp;gt;. The &amp;lt;scene name=&#039;76/761695/Lamp1bindingsite/15&#039;&amp;gt;histidine triad&amp;lt;/scene&amp;gt; is critical in forming a &amp;lt;scene name=&#039;76/761695/Lamp1bindingsite/9&#039;&amp;gt;binding site&amp;lt;/scene&amp;gt; for LAMP1&amp;lt;ref name=&amp;quot;PMID: 28448640&amp;quot;&amp;gt;PMID: 28448640 &amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 27605678&amp;quot;&amp;gt;PMID: 27605678 &amp;lt;/ref&amp;gt;.&lt;br /&gt;
==Resources==&lt;br /&gt;
For more information on this protein structure visit the following sites: [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4zjf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4zjf OCA], [http://pdbe.org/4zjf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4zjf RCSB], [http://www.ebi.ac.uk/pdbsum/4zjf PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4zjf ProSAT]&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
== References ==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;br /&gt;
[[Category: Cohen, N]]&lt;br /&gt;
[[Category: Cohen-Dvashi, H]]&lt;br /&gt;
[[Category: Diskin, R]]&lt;br /&gt;
[[Category: Israeli, H]]&lt;br /&gt;
[[Category: Arenavirus]]&lt;br /&gt;
[[Category: Glycoprotein]]&lt;br /&gt;
[[Category: Lassa]]&lt;br /&gt;
[[Category: LASV]]&lt;br /&gt;
[[Category: Receptor binding]]&lt;br /&gt;
[[Category: Viral protein]]&lt;br /&gt;
[[Category: 4zjf]]&lt;br /&gt;
[[Category: GP1]]&lt;/div&gt;</summary>
		<author><name>Rebecca Holstein</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=GP1_of_Lassa_Virus&amp;diff=2760790</id>
		<title>GP1 of Lassa Virus</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=GP1_of_Lassa_Virus&amp;diff=2760790"/>
		<updated>2017-08-26T22:11:19Z</updated>

		<summary type="html">&lt;p&gt;Rebecca Holstein: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;StructureSection load=&#039;4zjf&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;4ZJF structure&#039; scene=&#039;76/761695/4zjf_chaina/3&#039;&amp;gt;&lt;br /&gt;
==Importance==&lt;br /&gt;
Lassa virus (LASV), an Old World (OW) [http://en.wikipedia.org/wiki/Arenavirus arenavirus], is a notorious disease-causing agent primarily in West Africa that is able to spread from rodents to humans. This deadly pathogen causes severe viral hemorrhagic fevers and significant mortality. So far, there are no available vaccines for LASV, and only one successful vaccine against another virus found in the &#039;&#039;Arenaviridae&#039;&#039; family: Junin virus&amp;lt;ref name=&amp;quot;PMID: 9466512&amp;quot;&amp;gt;PMID: 9466512 &amp;lt;/ref&amp;gt;. Structural data at atomic resolution for viral proteins are laying the foundation for better understanding both the biology behind viral proteins and ways to combat against them. Determining the structure of the complete trimeric glycoprotein complex (GPC), composed of GP1, GP2, and SSP (stable signal peptide), will pave the path towards a future discovery of novel antiviral drugs. This is the first representative structure for OW arenaviruses. This structure reveals the overall architecture of GP1 domains from OW arenaviruses and important information relating to the mechanisms for pH switching and the binding of LASV to [[LAMP1]] (Lysosome-associated membrane glycoprotein), a recently identified host receptor that is critical for successful infection. In addition, structural analysis suggests two novel immune evasion mechanisms that LASV may utilize to escape antibody-based immune response.&lt;br /&gt;
== Function ==&lt;br /&gt;
&#039;&#039;&#039;GP1&#039;&#039;&#039; (Glycoprotein 1) is the receptor binding domain of LASV that mediates receptor recognition. Research thus far indicates that GP1 from LASV may undergo irreversible conformational changes that could serve as an immunological decoy mechanism. Arenaviruses utilize various cell surface proteins as their cellular receptors for recognizing and attaching to target cells. New World (NW) arenaviruses that belong to clades A and B use transferrin receptor 1 (TfR1)&amp;lt;ref name=&amp;quot;PMID:17287727&amp;quot;&amp;gt;PMID:17287727&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID:24920811&amp;quot;&amp;gt;PMID:24920811&amp;lt;/ref&amp;gt;, whereas OW arenaviruses, as well as clade C NW arenaviruses, use α-dystroglycan (α-DG) &amp;lt;ref name=&amp;quot;PMID:9851928&amp;quot;&amp;gt;PMID:9851928&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID:15857984&amp;quot;&amp;gt;PMID:15857984&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID:11967329&amp;quot;&amp;gt;PMID:11967329&amp;lt;/ref&amp;gt;. A trimeric class 1 viral glycoprotein complex (the spike complex) recognizes the cellular receptors and mediates membrane fusion upon exposure to low pH at the lysosome &amp;lt;ref name=&amp;quot;PMID:16731928&amp;quot;&amp;gt;PMID:16731928&amp;lt;/ref&amp;gt;. The spike complex is expressed as a glycoprotein precursor that is cleaved into three segments by a signal peptidase and SKI-1/S1P protease&amp;lt;ref name=&amp;quot;PMID:21612810&amp;quot;&amp;gt;PMID:21612810&amp;lt;/ref&amp;gt;. The functional spike complex consists of GP1, a membrane-anchored fusion protein (GP2), and a unique structured SSP &amp;lt;ref name=&amp;quot;PMID:23202458&amp;quot;&amp;gt;PMID:23202458&amp;lt;/ref&amp;gt;.                                                                                                                                                                                                                                                                                                                                                                                         &lt;br /&gt;
==Structural Highlights==&lt;br /&gt;
GP1 of LASV is a single chain structure with attached &amp;lt;scene name=&#039;76/761695/Nag/4&#039;&amp;gt;NAG&amp;lt;/scene&amp;gt; glycans. The overall architecture of GP1 features a central β-sheet and two distinct halves: a glycosylated half containing the receptor-binding site that is made mostly by the central β-sheet and surrounding loops and a half that contains mostly helices and most likely faces the trimer axis)&amp;lt;ref name=&amp;quot;PMID: 25972533&amp;quot;&amp;gt;PMID: 25972533&amp;lt;/ref&amp;gt;. The method used to determine this structure was [http://en.wikipedia.org/wiki/X-ray_crystallography X-ray diffraction]&lt;br /&gt;
===LAMP1 Binding Site===&lt;br /&gt;
The primary cellular receptor of LASV is α-dystroglycan (α-DG)&amp;lt;ref name=&amp;quot;PMID: 9851928&amp;quot;&amp;gt;PMID: 9851928&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 15857984&amp;quot;&amp;gt;PMID: 15857984&amp;lt;/ref&amp;gt;, which is recognized by a trimeric class 1 viral GPC (spike complex) on the viral surface&amp;lt;ref name=&amp;quot;PMID: 16731928&amp;quot;&amp;gt;PMID: 16731928&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 26849049&amp;quot;&amp;gt;PMID: 26849049&amp;lt;/ref&amp;gt;. Following successful attachment to α-DG on cells, LASV is internalized via [http://en.wikipedia.org/wiki/Pinocytosis macropinocytosis]&amp;lt;ref name=&amp;quot;PMID: 27147735&amp;quot;&amp;gt;PMID: 27147735&amp;lt;/ref&amp;gt;, and the GPC facilitates membrane fusion at the acidic environment of a late endosomal compartment&amp;lt;ref name=&amp;quot;PMID: 16731928&amp;quot;&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 21931550&amp;quot;&amp;gt;PMID: 21931550 &amp;lt;/ref&amp;gt;. Recent studies have shown that successful infection by LASV requires it to switch in a pH-dependent manner from α-DG to LAMP1&amp;lt;ref name=&amp;quot;PMID: 27605678&amp;quot; /&amp;gt;&amp;lt;ref name=&amp;quot;PMID:24970085&amp;quot;&amp;gt;PMID:24970085&amp;lt;/ref&amp;gt;. Binding of the &amp;lt;scene name=&#039;76/761695/Lamp1bindingsite/14&#039;&amp;gt;LAMP1&amp;lt;/scene&amp;gt; endosomal compartment triggers the spikes.&lt;br /&gt;
=== Histidine Triad===&lt;br /&gt;
Included in this structure is a unique &amp;lt;scene name=&#039;76/761695/Histriad/9&#039;&amp;gt;triad of histidines&amp;lt;/scene&amp;gt; that is highly conserved among OW arenaviruses. Located on the β-sheet face of GP1,  the histidine triad is a structural element that directly interacts with LAMP1 and helps stabilize a LAMP1-&amp;quot;compatible&amp;quot; conformation by providing a molecular mechanism for the pH-dependent receptor switching&amp;lt;ref name=&amp;quot;PMID: 25972533&amp;quot; /&amp;gt;. The &amp;lt;scene name=&#039;76/761695/Lamp1bindingsite/5&#039;&amp;gt;histidine triad&amp;lt;/scene&amp;gt; is critical in forming a &amp;lt;scene name=&#039;76/761695/Lamp1bindingsite/9&#039;&amp;gt;binding site&amp;lt;/scene&amp;gt; for LAMP1&amp;lt;ref name=&amp;quot;PMID: 28448640&amp;quot;&amp;gt;PMID: 28448640 &amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 27605678&amp;quot;&amp;gt;PMID: 27605678 &amp;lt;/ref&amp;gt;.&lt;br /&gt;
==Resources==&lt;br /&gt;
For more information on this protein structure visit the following sites: [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4zjf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4zjf OCA], [http://pdbe.org/4zjf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4zjf RCSB], [http://www.ebi.ac.uk/pdbsum/4zjf PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4zjf ProSAT]&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
== References == &lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;br /&gt;
[[Category: Cohen, N]]&lt;br /&gt;
[[Category: Cohen-Dvashi, H]]&lt;br /&gt;
[[Category: Diskin, R]]&lt;br /&gt;
[[Category: Israeli, H]]&lt;br /&gt;
[[Category: Arenavirus]]&lt;br /&gt;
[[Category: Glycoprotein]]&lt;br /&gt;
[[Category: Lassa]]&lt;br /&gt;
[[Category: LASV]]&lt;br /&gt;
[[Category: Receptor binding]]&lt;br /&gt;
[[Category: Viral protein]]&lt;br /&gt;
[[Category: 4zjf]]&lt;br /&gt;
[[Category: GP1]]&lt;/div&gt;</summary>
		<author><name>Rebecca Holstein</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=GP1_of_Lassa_Virus&amp;diff=2760789</id>
		<title>GP1 of Lassa Virus</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=GP1_of_Lassa_Virus&amp;diff=2760789"/>
		<updated>2017-08-26T22:10:27Z</updated>

		<summary type="html">&lt;p&gt;Rebecca Holstein: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;StructureSection load=&#039;4zjf&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;4ZJF structure&#039; scene=&#039;76/761695/4zjf_chaina/3&#039;&amp;gt;&lt;br /&gt;
==Importance==&lt;br /&gt;
Lassa virus (LASV), an Old World (OW) [http://en.wikipedia.org/wiki/Arenavirus arenavirus], is a notorious disease-causing agent primarily in West Africa that is able to spread from rodents to humans. This deadly pathogen causes severe viral hemorrhagic fevers and significant mortality. So far, there are no available vaccines for LASV, and only one successful vaccine against another virus found in the &#039;&#039;Arenaviridae&#039;&#039; family: Junin virus&amp;lt;ref name=&amp;quot;PMID: 9466512&amp;quot;&amp;gt;PMID: 9466512 &amp;lt;/ref&amp;gt;. Structural data at atomic resolution for viral proteins are laying the foundation for better understanding both the biology behind viral proteins and ways to combat against them. Determining the structure of the complete trimeric glycoprotein complex (GPC), composed of GP1, GP2, and SSP (stable signal peptide), will pave the path towards a future discovery of novel antiviral drugs. This is the first representative structure for OW arenaviruses. This structure reveals the overall architecture of GP1 domains from OW arenaviruses and important information relating to the mechanisms for pH switching and the binding of LASV to [[LAMP1]] (Lysosome-associated membrane glycoprotein), a recently identified host receptor that is critical for successful infection. In addition, structural analysis suggests two novel immune evasion mechanisms that LASV may utilize to escape antibody-based immune response.&lt;br /&gt;
== Function ==&lt;br /&gt;
&#039;&#039;&#039;GP1&#039;&#039;&#039; (Glycoprotein 1) is the receptor binding domain of LASV that mediates receptor recognition. Research thus far indicates that GP1 from LASV may undergo irreversible conformational changes that could serve as an immunological decoy mechanism. Arenaviruses utilize various cell surface proteins as their cellular receptors for recognizing and attaching to target cells. New World (NW) arenaviruses that belong to clades A and B use transferrin receptor 1 (TfR1)&amp;lt;ref name=&amp;quot;PMID:17287727&amp;quot;&amp;gt;PMID:17287727&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID:24920811&amp;quot;&amp;gt;PMID:24920811&amp;lt;/ref&amp;gt;, whereas OW arenaviruses, as well as clade C NW arenaviruses, use α-dystroglycan (α-DG) &amp;lt;ref name=&amp;quot;PMID:9851928&amp;quot;&amp;gt;PMID:9851928&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID:15857984&amp;quot;&amp;gt;PMID:15857984&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID:11967329&amp;quot;&amp;gt;PMID:11967329&amp;lt;/ref&amp;gt;. A trimeric class 1 viral glycoprotein complex (the spike complex) recognizes the cellular receptors and mediates membrane fusion upon exposure to low pH at the lysosome &amp;lt;ref name=&amp;quot;PMID:16731928&amp;quot;&amp;gt;PMID:16731928&amp;lt;/ref&amp;gt;. The spike complex is expressed as a glycoprotein precursor that is cleaved into three segments by a signal peptidase and SKI-1/S1P protease&amp;lt;ref name=&amp;quot;PMID:21612810&amp;quot;&amp;gt;PMID:21612810&amp;lt;/ref&amp;gt;. The functional spike complex consists of GP1, a membrane-anchored fusion protein (GP2), and a unique structured SSP &amp;lt;ref name=&amp;quot;PMID:23202458&amp;quot;&amp;gt;PMID:23202458&amp;lt;/ref&amp;gt;.                                                                                                                                                                                                                                                                                                                                                                                         &lt;br /&gt;
==Structural Highlights==&lt;br /&gt;
GP1 of LASV is a single chain structure with attached &amp;lt;scene name=&#039;76/761695/Nag/4&#039;&amp;gt;NAG&amp;lt;/scene&amp;gt; glycans. The overall architecture of GP1 features a central β-sheet and two distinct halves: a glycosylated half containing the receptor-binding site that is made mostly by the central β-sheet and surrounding loops and a half that contains mostly helices and most likely faces the trimer axis)&amp;lt;ref name=&amp;quot;PMID: 25972533&amp;quot;&amp;gt;PMID: 25972533&amp;lt;/ref&amp;gt;. The method used to determine this structure was [http://en.wikipedia.org/wiki/X-ray_crystallography X-ray diffraction]&lt;br /&gt;
===LAMP1 Binding Site===&lt;br /&gt;
The primary cellular receptor of LASV is α-dystroglycan (α-DG)&amp;lt;ref name=&amp;quot;PMID: 9851928&amp;quot;&amp;gt;PMID: 9851928&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 15857984&amp;quot;&amp;gt;PMID: 15857984&amp;lt;/ref&amp;gt;, which is recognized by a trimeric class 1 viral GPC (spike complex) on the viral surface&amp;lt;ref name=&amp;quot;PMID: 16731928&amp;quot;&amp;gt;PMID: 16731928&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 26849049&amp;quot;&amp;gt;PMID: 26849049&amp;lt;/ref&amp;gt;. Following successful attachment to α-DG on cells, LASV is internalized via [http://en.wikipedia.org/wiki/Pinocytosis macropinocytosis]&amp;lt;ref name=&amp;quot;PMID: 27147735&amp;quot;&amp;gt;PMID: 27147735&amp;lt;/ref&amp;gt;, and the GPC facilitates membrane fusion at the acidic environment of a late endosomal compartment&amp;lt;ref name=&amp;quot;PMID: 16731928&amp;quot;&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 21931550&amp;quot;&amp;gt;PMID: 21931550 &amp;lt;/ref&amp;gt;. Recent studies have shown that successful infection by LASV requires it to switch in a pH-dependent manner from α-DG to LAMP1&amp;lt;ref name=&amp;quot;PMID: 27605678&amp;quot; /&amp;gt;&amp;lt;ref name=&amp;quot;PMID:24970085&amp;quot;&amp;gt;PMID:24970085&amp;lt;/ref&amp;gt;. Binding of the &amp;lt;scene name=&#039;76/761695/Lamp1bindingsite/14&#039;&amp;gt;LAMP1&amp;lt;/scene&amp;gt; endosomal compartment triggers the spikes.&lt;br /&gt;
=== Histidine Triad===&lt;br /&gt;
Included in this structure is a unique &amp;lt;scene name=&#039;76/761695/Histriad/7&#039;&amp;gt;triad of histidines&amp;lt;/scene&amp;gt; that is highly conserved among OW arenaviruses. Located on the β-sheet face of GP1,  the histidine triad is a structural element that directly interacts with LAMP1 and helps stabilize a LAMP1-&amp;quot;compatible&amp;quot; conformation by providing a molecular mechanism for the pH-dependent receptor switching&amp;lt;ref name=&amp;quot;PMID: 25972533&amp;quot; /&amp;gt;. The &amp;lt;scene name=&#039;76/761695/Lamp1bindingsite/5&#039;&amp;gt;histidine triad&amp;lt;/scene&amp;gt; is critical in forming a &amp;lt;scene name=&#039;76/761695/Lamp1bindingsite/9&#039;&amp;gt;binding site&amp;lt;/scene&amp;gt; for LAMP1&amp;lt;ref name=&amp;quot;PMID: 28448640&amp;quot;&amp;gt;PMID: 28448640 &amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 27605678&amp;quot;&amp;gt;PMID: 27605678 &amp;lt;/ref&amp;gt;.&lt;br /&gt;
==Resources==&lt;br /&gt;
For more information on this protein structure visit the following sites: [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4zjf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4zjf OCA], [http://pdbe.org/4zjf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4zjf RCSB], [http://www.ebi.ac.uk/pdbsum/4zjf PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4zjf ProSAT]&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
== References ==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;br /&gt;
[[Category: Cohen, N]]&lt;br /&gt;
[[Category: Cohen-Dvashi, H]]&lt;br /&gt;
[[Category: Diskin, R]]&lt;br /&gt;
[[Category: Israeli, H]]&lt;br /&gt;
[[Category: Arenavirus]]&lt;br /&gt;
[[Category: Glycoprotein]]&lt;br /&gt;
[[Category: Lassa]]&lt;br /&gt;
[[Category: LASV]]&lt;br /&gt;
[[Category: Receptor binding]]&lt;br /&gt;
[[Category: Viral protein]]&lt;br /&gt;
[[Category: 4zjf]]&lt;br /&gt;
[[Category: GP1]]&lt;/div&gt;</summary>
		<author><name>Rebecca Holstein</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=GP1_of_Lassa_Virus&amp;diff=2760768</id>
		<title>GP1 of Lassa Virus</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=GP1_of_Lassa_Virus&amp;diff=2760768"/>
		<updated>2017-08-24T11:56:23Z</updated>

		<summary type="html">&lt;p&gt;Rebecca Holstein: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;StructureSection load=&#039;4zjf&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;4ZJF structure&#039; scene=&#039;76/761695/4zjf_chaina/3&#039;&amp;gt;&lt;br /&gt;
==Importance==&lt;br /&gt;
Lassa virus (LASV), an Old World (OW) [http://en.wikipedia.org/wiki/Arenavirus arenavirus], is a notorious disease-causing agent primarily in West Africa that is able to spread from rodents to humans. This deadly pathogen causes severe viral hemorrhagic fevers and significant mortality. So far, there are no available vaccines for LASV, and only one successful vaccine against another virus found in the &#039;&#039;Arenaviridae&#039;&#039; family: Junin virus&amp;lt;ref name=&amp;quot;PMID: 9466512&amp;quot;&amp;gt;PMID: 9466512 &amp;lt;/ref&amp;gt;. Structural data at atomic resolution for viral proteins are laying the foundation for better understanding both the biology behind viral proteins and ways to combat against them. Determining the structure of the complete trimeric glycoprotein complex (GPC), composed of GP1, GP2, and SSP (stable signal peptide), will pave the path towards a future discovery of novel antiviral drugs. This is the first representative structure for OW arenaviruses. This structure reveals the overall architecture of GP1 domains from OW arenaviruses and important information relating to the mechanisms for pH switching and the binding of LASV to [[LAMP1]] (Lysosome-associated membrane glycoprotein), a recently identified host receptor that is critical for successful infection. In addition, structural analysis suggests two novel immune evasion mechanisms that LASV may utilize to escape antibody-based immune response.&lt;br /&gt;
== Function ==&lt;br /&gt;
&#039;&#039;&#039;GP1&#039;&#039;&#039; (Glycoprotein 1) is the receptor binding domain of LASV that mediates receptor recognition. Research thus far indicates that GP1 from LASV may undergo irreversible conformational changes that could serve as an immunological decoy mechanism. Arenaviruses utilize various cell surface proteins as their cellular receptors for recognizing and attaching to target cells. New World (NW) arenaviruses that belong to clades A and B use transferrin receptor 1 (TfR1)&amp;lt;ref name=&amp;quot;PMID:17287727&amp;quot;&amp;gt;PMID:17287727&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID:24920811&amp;quot;&amp;gt;PMID:24920811&amp;lt;/ref&amp;gt;, whereas OW arenaviruses, as well as clade C NW arenaviruses, use α-dystroglycan (α-DG) &amp;lt;ref name=&amp;quot;PMID:9851928&amp;quot;&amp;gt;PMID:9851928&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID:15857984&amp;quot;&amp;gt;PMID:15857984&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID:11967329&amp;quot;&amp;gt;PMID:11967329&amp;lt;/ref&amp;gt;. A trimeric class 1 viral glycoprotein complex (the spike complex) recognizes the cellular receptors and mediates membrane fusion upon exposure to low pH at the lysosome &amp;lt;ref name=&amp;quot;PMID:16731928&amp;quot;&amp;gt;PMID:16731928&amp;lt;/ref&amp;gt;. The spike complex is expressed as a glycoprotein precursor that is cleaved into three segments by a signal peptidase and SKI-1/S1P protease&amp;lt;ref name=&amp;quot;PMID:21612810&amp;quot;&amp;gt;PMID:21612810&amp;lt;/ref&amp;gt;. The functional spike complex consists of GP1, a membrane-anchored fusion protein (GP2), and a unique structured SSP &amp;lt;ref name=&amp;quot;PMID:23202458&amp;quot;&amp;gt;PMID:23202458&amp;lt;/ref&amp;gt;.                                                                                                                                                                                                                                                                                                                                                                                         &lt;br /&gt;
==Structural Highlights==&lt;br /&gt;
GP1 of LASV is a single chain structure with attached &amp;lt;scene name=&#039;76/761695/Nag/4&#039;&amp;gt;NAG&amp;lt;/scene&amp;gt; glycans. The overall architecture of GP1 features a central β-sheet and two distinct halves: a glycosylated half containing the receptor-binding site that is made mostly by the central β-sheet and surrounding loops and a half that contains mostly helices and most likely faces the trimer axis)&amp;lt;ref name=&amp;quot;PMID: 25972533&amp;quot;&amp;gt;PMID: 25972533&amp;lt;/ref&amp;gt;. The method used to determine this structure was [http://en.wikipedia.org/wiki/X-ray_crystallography X-ray diffraction]&lt;br /&gt;
===LAMP1 Binding Site===&lt;br /&gt;
The primary cellular receptor of LASV is α-dystroglycan (α-DG)&amp;lt;ref name=&amp;quot;PMID: 9851928&amp;quot;&amp;gt;PMID: 9851928&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 15857984&amp;quot;&amp;gt;PMID: 15857984&amp;lt;/ref&amp;gt;, which is recognized by a trimeric class 1 viral GPC (spike complex) on the viral surface&amp;lt;ref name=&amp;quot;PMID: 16731928&amp;quot;&amp;gt;PMID: 16731928&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 26849049&amp;quot;&amp;gt;PMID: 26849049&amp;lt;/ref&amp;gt;. Following successful attachment to α-DG on cells, LASV is internalized via [http://en.wikipedia.org/wiki/Pinocytosis macropinocytosis]&amp;lt;ref name=&amp;quot;PMID: 27147735&amp;quot;&amp;gt;PMID: 27147735&amp;lt;/ref&amp;gt;, and the GPC facilitates membrane fusion at the acidic environment of a late endosomal compartment&amp;lt;ref name=&amp;quot;PMID: 16731928&amp;quot;&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 21931550&amp;quot;&amp;gt;PMID: 21931550 &amp;lt;/ref&amp;gt;. Recent studies have shown that successful infection by LASV requires it to switch in a pH-dependent manner from α-DG to LAMP1&amp;lt;ref name=&amp;quot;PMID: 27605678&amp;quot; /&amp;gt;&amp;lt;ref name=&amp;quot;PMID:24970085&amp;quot;&amp;gt;PMID:24970085&amp;lt;/ref&amp;gt;. Binding of the &amp;lt;scene name=&#039;76/761695/Lamp1bindingsite/10&#039;&amp;gt;LAMP1&amp;lt;/scene&amp;gt; endosomal compartment triggers the spikes. &lt;br /&gt;
=== Histidine Triad===&lt;br /&gt;
Included in this structure is a unique &amp;lt;scene name=&#039;76/761695/Histriad/7&#039;&amp;gt;triad of histidines&amp;lt;/scene&amp;gt; that is highly conserved among OW arenaviruses. Located on the β-sheet face of GP1,  the histidine triad is a structural element that directly interacts with LAMP1 and helps stabilize a LAMP1-&amp;quot;compatible&amp;quot; conformation by providing a molecular mechanism for the pH-dependent receptor switching&amp;lt;ref name=&amp;quot;PMID: 25972533&amp;quot; /&amp;gt;. The &amp;lt;scene name=&#039;76/761695/Lamp1bindingsite/5&#039;&amp;gt;histidine triad&amp;lt;/scene&amp;gt; is critical in forming a &amp;lt;scene name=&#039;76/761695/Lamp1bindingsite/9&#039;&amp;gt;binding site&amp;lt;/scene&amp;gt; for LAMP1&amp;lt;ref name=&amp;quot;PMID: 28448640&amp;quot;&amp;gt;PMID: 28448640 &amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 27605678&amp;quot;&amp;gt;PMID: 27605678 &amp;lt;/ref&amp;gt;.&lt;br /&gt;
==Resources==&lt;br /&gt;
For more information on this protein structure visit the following sites: [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4zjf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4zjf OCA], [http://pdbe.org/4zjf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4zjf RCSB], [http://www.ebi.ac.uk/pdbsum/4zjf PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4zjf ProSAT]&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
== References ==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;br /&gt;
[[Category: Cohen, N]]&lt;br /&gt;
[[Category: Cohen-Dvashi, H]]&lt;br /&gt;
[[Category: Diskin, R]]&lt;br /&gt;
[[Category: Israeli, H]]&lt;br /&gt;
[[Category: Arenavirus]]&lt;br /&gt;
[[Category: Glycoprotein]]&lt;br /&gt;
[[Category: Lassa]]&lt;br /&gt;
[[Category: LASV]]&lt;br /&gt;
[[Category: Receptor binding]]&lt;br /&gt;
[[Category: Viral protein]]&lt;br /&gt;
[[Category: 4zjf]]&lt;br /&gt;
[[Category: GP1]]&lt;/div&gt;</summary>
		<author><name>Rebecca Holstein</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Proteopedia:Video_Guide&amp;diff=2759670</id>
		<title>Proteopedia:Video Guide</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Proteopedia:Video_Guide&amp;diff=2759670"/>
		<updated>2017-08-20T01:05:11Z</updated>

		<summary type="html">&lt;p&gt;Rebecca Holstein: adding Rebecca Holstein as author&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;Welcome to the Proteopedia Video Guide.&lt;br /&gt;
&lt;br /&gt;
On this page you will find several narrated videos to guide you through using Proteopedia. At [[Help:Contents]] you will find written guides.&lt;br /&gt;
&lt;br /&gt;
Feel free to expand each video section with text explaining the concepts addressed in the video.&lt;br /&gt;
&lt;br /&gt;
==Video 1: Introduction==&lt;br /&gt;
&lt;br /&gt;
In this video you will find a brief introduction to Proteopedia. See also [[Proteopedia:About|About Proteopedia]].&lt;br /&gt;
&lt;br /&gt;
&amp;lt;html5media height=240 width=427&amp;gt;https://www.youtube.com/watch?v=xi0EmPmozes&amp;lt;/html5media&amp;gt; &lt;br /&gt;
&lt;br /&gt;
==Video 2: Searching - A quick introduction==&lt;br /&gt;
&lt;br /&gt;
This video will teach you the basics on how to search in Proteopedia. See also [[Help:Searching]].&lt;br /&gt;
&lt;br /&gt;
&amp;lt;html5media height=240 width=427&amp;gt;https://www.youtube.com/watch?v=KXuZMi_F0a4&amp;lt;/html5media&amp;gt; &lt;br /&gt;
&lt;br /&gt;
==Video 3: Topic vs. Seeded pages==&lt;br /&gt;
&lt;br /&gt;
This video explains the difference between &#039;&#039;pages&#039;&#039; for the over 122,000 [[PDB]] entries that have been created automatically in Proteopedia, and human-authored articles on broader topics like &amp;quot;Hemoglobin&amp;quot; and &amp;quot;Acetylcholinesterase&amp;quot;. (See also [[Topic pages]] and [[Proteopedia:Table of Contents]].)&lt;br /&gt;
&lt;br /&gt;
&amp;lt;html5media height=240 width=427&amp;gt;https://www.youtube.com/watch?v=hZOW5FyNVzU&amp;lt;/html5media&amp;gt; &lt;br /&gt;
&lt;br /&gt;
==Video 4: Editing, formatting, and styling text on a page==&lt;br /&gt;
[[Image:Wikitext2.png|frame]]&lt;br /&gt;
This video will show you how to edit, format, and style text on a page by familiarizing you with the editing features of Proteopedia. Text with format and style markup is called &#039;&#039;&#039;wikitext&#039;&#039;&#039;.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;html5media height=“240” width=“427”&amp;gt;https://www.youtube.com/watch?v=fdKTFRpHjWE&amp;lt;/html5media&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==Video 5: Uploading an image or file and adding an image to a page==&lt;br /&gt;
&lt;br /&gt;
Video 5 will show you how to upload an image or file to Proteopedia as well as how to add an uploaded image to a page.&lt;br /&gt;
Also available are [[Help:Uploading_molecules|instructions for uploading a &amp;quot;molecule&amp;quot; or PDB file, and incorporating it into a molecular scene]].&lt;br /&gt;
&lt;br /&gt;
&amp;lt;html5media height=“240” width=“427”&amp;gt;https://www.youtube.com/watch?v=x1GPWXWoh0s&amp;lt;/html5media&amp;gt; &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
==Video 6: Adding a 3D applet (3D structure) to a page==&lt;br /&gt;
&lt;br /&gt;
This video will show you how to add a 3D applet (3D structure) to a page in Proteopedia.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;html5media height=“240” width=“427”&amp;gt;https://www.youtube.com/watch?v=81q_7m8d8Pw&amp;lt;/html5media&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==Video 7: Adding scenes (green links)==&lt;br /&gt;
&lt;br /&gt;
This video gives a basic introduction to adding scenes (green links) to pages in Proteopedia.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;html5media height=“240” width=“427”&amp;gt;https://www.youtube.com/watch?v=90jonYOzzCY&amp;lt;/html5media&amp;gt; &lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
==See Also==&lt;br /&gt;
*[[Help:Contents]]&lt;/div&gt;</summary>
		<author><name>Rebecca Holstein</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=GP1_of_Lassa_Virus&amp;diff=2758155</id>
		<title>GP1 of Lassa Virus</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=GP1_of_Lassa_Virus&amp;diff=2758155"/>
		<updated>2017-08-09T13:46:53Z</updated>

		<summary type="html">&lt;p&gt;Rebecca Holstein: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;StructureSection load=&#039;4zjf&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;4ZJF structure&#039; scene=&#039;76/761695/4zjf_chaina/3&#039;&amp;gt;&lt;br /&gt;
==Importance==&lt;br /&gt;
Lassa virus (LASV), an Old World (OW) [http://en.wikipedia.org/wiki/Arenavirus arenavirus], is a notorious disease-causing agent primarily in West Africa that is able to spread from rodents to humans. This deadly pathogen causes severe viral hemorrhagic fevers and significant mortality. So far, there are no available vaccines for LASV, and only one successful vaccine against another virus found in the &#039;&#039;Arenaviridae&#039;&#039; family: Junin virus&amp;lt;ref name=&amp;quot;PMID: 9466512&amp;quot;&amp;gt;PMID: 9466512 &amp;lt;/ref&amp;gt;. Structural data at atomic resolution for viral proteins are laying the foundation for better understanding both the biology behind viral proteins and ways to combat against them. Determining the structure of the complete trimeric glycoprotein complex (GPC), composed of GP1, GP2, and SSP (stable signal peptide), will pave the path towards a future discovery of novel antiviral drugs. This is the first representative structure for OW arenaviruses. This structure reveals the overall architecture of GP1 domains from OW arenaviruses and important information relating to the mechanisms for pH switching and the binding of LASV to [[LAMP1]] (Lysosome-associated membrane glycoprotein), a recently identified host receptor that is critical for successful infection. In addition, structural analysis suggests two novel immune evasion mechanisms that LASV may utilize to escape antibody-based immune response.&lt;br /&gt;
== Function ==&lt;br /&gt;
&#039;&#039;&#039;GP1&#039;&#039;&#039; (Glycoprotein 1) is the receptor binding domain of LASV that mediates receptor recognition. Research thus far indicates that GP1 from LASV may undergo irreversible conformational changes that could serve as an immunological decoy mechanism. Arenaviruses utilize various cell surface proteins as their cellular receptors for recognizing and attaching to target cells. New World (NW) arenaviruses that belong to clades A and B use transferrin receptor 1 (TfR1)&amp;lt;ref name=&amp;quot;PMID:17287727&amp;quot;&amp;gt;PMID:17287727&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID:24920811&amp;quot;&amp;gt;PMID:24920811&amp;lt;/ref&amp;gt;, whereas OW arenaviruses, as well as clade C NW arenaviruses, use α-dystroglycan (α-DG) &amp;lt;ref name=&amp;quot;PMID:9851928&amp;quot;&amp;gt;PMID:9851928&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID:15857984&amp;quot;&amp;gt;PMID:15857984&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID:11967329&amp;quot;&amp;gt;PMID:11967329&amp;lt;/ref&amp;gt;. A trimeric class 1 viral glycoprotein complex (the spike complex) recognizes the cellular receptors and mediates membrane fusion upon exposure to low pH at the lysosome &amp;lt;ref name=&amp;quot;PMID:16731928&amp;quot;&amp;gt;PMID:16731928&amp;lt;/ref&amp;gt;. The spike complex is expressed as a glycoprotein precursor that is cleaved into three segments by a signal peptidase and SKI-1/S1P protease&amp;lt;ref name=&amp;quot;PMID:21612810&amp;quot;&amp;gt;PMID:21612810&amp;lt;/ref&amp;gt;. The functional spike complex consists of GP1, a membrane-anchored fusion protein (GP2), and a unique structured SSP &amp;lt;ref name=&amp;quot;PMID:23202458&amp;quot;&amp;gt;PMID:23202458&amp;lt;/ref&amp;gt;.                                                                                                                                                                                                                                                                                                                                                                                         &lt;br /&gt;
==Structural Highlights==&lt;br /&gt;
GP1 of LASV is a single chain structure with attached &amp;lt;scene name=&#039;76/761695/Nag/3&#039;&amp;gt;NAG&amp;lt;/scene&amp;gt; glycans. The overall architecture of GP1 features a central β-sheet and two distinct halves: a glycosylated half containing the receptor-binding site that is made mostly by the central β-sheet and surrounding loops and a half that contains mostly helices and most likely faces the trimer axis)&amp;lt;ref name=&amp;quot;PMID: 25972533&amp;quot;&amp;gt;PMID: 25972533&amp;lt;/ref&amp;gt;. The method used to determine this structure was [http://en.wikipedia.org/wiki/X-ray_crystallography X-ray diffraction]&lt;br /&gt;
===LAMP1 Binding Site===&lt;br /&gt;
The primary cellular receptor of LASV is α-dystroglycan (α-DG)&amp;lt;ref name=&amp;quot;PMID: 9851928&amp;quot;&amp;gt;PMID: 9851928&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 15857984&amp;quot;&amp;gt;PMID: 15857984&amp;lt;/ref&amp;gt;, which is recognized by a trimeric class 1 viral GPC (spike complex) on the viral surface&amp;lt;ref name=&amp;quot;PMID: 16731928&amp;quot;&amp;gt;PMID: 16731928&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 26849049&amp;quot;&amp;gt;PMID: 26849049&amp;lt;/ref&amp;gt;. Following successful attachment to α-DG on cells, LASV is internalized via [http://en.wikipedia.org/wiki/Pinocytosis macropinocytosis]&amp;lt;ref name=&amp;quot;PMID: 27147735&amp;quot;&amp;gt;PMID: 27147735&amp;lt;/ref&amp;gt;, and the GPC facilitates membrane fusion at the acidic environment of a late endosomal compartment&amp;lt;ref name=&amp;quot;PMID: 16731928&amp;quot;&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 21931550&amp;quot;&amp;gt;PMID: 21931550 &amp;lt;/ref&amp;gt;. Recent studies have shown that successful infection by LASV requires it to switch in a pH-dependent manner from α-DG to LAMP1&amp;lt;ref name=&amp;quot;PMID: 27605678&amp;quot; /&amp;gt;&amp;lt;ref name=&amp;quot;PMID:24970085&amp;quot;&amp;gt;PMID:24970085&amp;lt;/ref&amp;gt;. Binding of the &amp;lt;scene name=&#039;76/761695/Lamp1bindingsite/10&#039;&amp;gt;LAMP1&amp;lt;/scene&amp;gt; endosomal compartment triggers the spikes. &lt;br /&gt;
=== Histidine Triad===&lt;br /&gt;
Included in this structure is a unique &amp;lt;scene name=&#039;76/761695/Histriad/7&#039;&amp;gt;triad of histidines&amp;lt;/scene&amp;gt; that is highly conserved among OW arenaviruses. Located on the β-sheet face of GP1,  the histidine triad is a structural element that directly interacts with LAMP1 and helps stabilize a LAMP1-&amp;quot;compatible&amp;quot; conformation by providing a molecular mechanism for the pH-dependent receptor switching&amp;lt;ref name=&amp;quot;PMID: 25972533&amp;quot; /&amp;gt;. The &amp;lt;scene name=&#039;76/761695/Lamp1bindingsite/5&#039;&amp;gt;histidine triad&amp;lt;/scene&amp;gt; is critical in forming a &amp;lt;scene name=&#039;76/761695/Lamp1bindingsite/9&#039;&amp;gt;binding site&amp;lt;/scene&amp;gt; for LAMP1&amp;lt;ref name=&amp;quot;PMID: 28448640&amp;quot;&amp;gt;PMID: 28448640 &amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 27605678&amp;quot;&amp;gt;PMID: 27605678 &amp;lt;/ref&amp;gt;.&lt;br /&gt;
==Resources==&lt;br /&gt;
For more information on this protein structure visit the following sites: [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4zjf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4zjf OCA], [http://pdbe.org/4zjf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4zjf RCSB], [http://www.ebi.ac.uk/pdbsum/4zjf PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4zjf ProSAT]&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
== References ==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;br /&gt;
[[Category: Cohen, N]]&lt;br /&gt;
[[Category: Cohen-Dvashi, H]]&lt;br /&gt;
[[Category: Diskin, R]]&lt;br /&gt;
[[Category: Israeli, H]]&lt;br /&gt;
[[Category: Arenavirus]]&lt;br /&gt;
[[Category: Glycoprotein]]&lt;br /&gt;
[[Category: Lassa]]&lt;br /&gt;
[[Category: LASV]]&lt;br /&gt;
[[Category: Receptor binding]]&lt;br /&gt;
[[Category: Viral protein]]&lt;br /&gt;
[[Category: 4zjf]]&lt;br /&gt;
[[Category: GP1]]&lt;/div&gt;</summary>
		<author><name>Rebecca Holstein</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=GP1_of_Lassa_Virus&amp;diff=2758154</id>
		<title>GP1 of Lassa Virus</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=GP1_of_Lassa_Virus&amp;diff=2758154"/>
		<updated>2017-08-09T13:41:03Z</updated>

		<summary type="html">&lt;p&gt;Rebecca Holstein: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;StructureSection load=&#039;4zjf&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;4ZJF structure&#039; scene=&#039;76/761695/4zjf_chaina/3&#039;&amp;gt;&lt;br /&gt;
==Importance==&lt;br /&gt;
Lassa virus (LASV), an Old World (OW) [http://en.wikipedia.org/wiki/Arenavirus arenavirus], is a notorious disease-causing agent primarily in West Africa that is able to spread from rodents to humans. This deadly pathogen causes severe viral hemorrhagic fevers and significant mortality. So far, there are no available vaccines for LASV, and only one successful vaccine against another virus found in the &#039;&#039;Arenaviridae&#039;&#039; family: Junin virus&amp;lt;ref name=&amp;quot;PMID: 9466512&amp;quot;&amp;gt;PMID: 9466512 &amp;lt;/ref&amp;gt;. Structural data at atomic resolution for viral proteins are laying the foundation for better understanding both the biology behind viral proteins and ways to combat against them. Determining the structure of the complete trimeric glycoprotein complex (GPC), composed of GP1, GP2, and SSP (stable signal peptide), will pave the path towards a future discovery of novel antiviral drugs. This is the first representative structure for OW arenaviruses. This structure reveals the overall architecture of GP1 domains from OW arenaviruses and important information relating to the mechanisms for pH switching and the binding of LASV to [[LAMP1]] (Lysosome-associated membrane glycoprotein), a recently identified host receptor that is critical for successful infection. In addition, structural analysis suggests two novel immune evasion mechanisms that LASV may utilize to escape antibody-based immune response.&lt;br /&gt;
==Function==&lt;br /&gt;
&#039;&#039;&#039;GP1&#039;&#039;&#039; (Glycoprotein 1) is the receptor binding domain of LASV that mediates receptor recognition. Research thus far indicates that GP1 from LASV may undergo irreversible conformational changes that could serve as an immunological decoy mechanism. Arenaviruses utilize various cell surface proteins as their cellular receptors for recognizing and attaching to target cells. New World (NW) arenaviruses that belong to clades A and B use transferrin receptor 1 (TfR1)&amp;lt;ref name=&amp;quot;PMID:17287727&amp;quot;&amp;gt;PMID:17287727&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID:24920811&amp;quot;&amp;gt;PMID:24920811&amp;lt;/ref&amp;gt;, whereas OW arenaviruses, as well as clade C NW arenaviruses, use α-dystroglycan (α-DG) &amp;lt;ref name=&amp;quot;PMID:9851928&amp;quot;&amp;gt;PMID:9851928&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID:15857984&amp;quot;&amp;gt;PMID:15857984&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID:11967329&amp;quot;&amp;gt;PMID:11967329&amp;lt;/ref&amp;gt;. A trimeric class 1 viral glycoprotein complex (the spike complex) recognizes the cellular receptors and mediates membrane fusion upon exposure to low pH at the lysosome &amp;lt;ref name=&amp;quot;PMID:16731928&amp;quot;&amp;gt;PMID:16731928&amp;lt;/ref&amp;gt;. The spike complex is expressed as a glycoprotein precursor that is cleaved into three segments by a signal peptidase and SKI-1/S1P protease&amp;lt;ref name=&amp;quot;PMID:21612810&amp;quot;&amp;gt;PMID:21612810&amp;lt;/ref&amp;gt;. The functional spike complex consists of GP1, a membrane-anchored fusion protein (GP2), and a unique structured SSP &amp;lt;ref name=&amp;quot;PMID:23202458&amp;quot;&amp;gt;PMID:23202458&amp;lt;/ref&amp;gt;.&lt;br /&gt;
==Structural Highlights==&lt;br /&gt;
GP1 of LASV is a single chain structure with attached &amp;lt;scene name=&#039;76/761695/Nag/3&#039;&amp;gt;NAG&amp;lt;/scene&amp;gt; glycans. The overall architecture of GP1 features a central β-sheet and two distinct halves: a glycosylated half containing the receptor-binding site that is made mostly by the central β-sheet and surrounding loops and a half that contains mostly helices and most likely faces the trimer axis)&amp;lt;ref name=&amp;quot;PMID: 25972533&amp;quot;&amp;gt;PMID: 25972533&amp;lt;/ref&amp;gt;. The method used to determine this structure was [http://en.wikipedia.org/wiki/X-ray_crystallography X-ray diffraction]&lt;br /&gt;
===LAMP1 Binding Site===&lt;br /&gt;
The primary cellular receptor of LASV is α-dystroglycan (α-DG)&amp;lt;ref name=&amp;quot;PMID: 9851928&amp;quot;&amp;gt;PMID: 9851928&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 15857984&amp;quot;&amp;gt;PMID: 15857984&amp;lt;/ref&amp;gt;, which is recognized by a trimeric class 1 viral GPC (spike complex) on the viral surface&amp;lt;ref name=&amp;quot;PMID: 16731928&amp;quot;&amp;gt;PMID: 16731928&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 26849049&amp;quot;&amp;gt;PMID: 26849049&amp;lt;/ref&amp;gt;. Following successful attachment to α-DG on cells, LASV is internalized via [http://en.wikipedia.org/wiki/Pinocytosis macropinocytosis]&amp;lt;ref name=&amp;quot;PMID: 27147735&amp;quot;&amp;gt;PMID: 27147735&amp;lt;/ref&amp;gt;, and the GPC facilitates membrane fusion at the acidic environment of a late endosomal compartment&amp;lt;ref name=&amp;quot;PMID: 16731928&amp;quot;&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 21931550&amp;quot;&amp;gt;PMID: 21931550 &amp;lt;/ref&amp;gt;. Recent studies have shown that successful infection by LASV requires it to switch in a pH-dependent manner from α-DG to LAMP1&amp;lt;ref name=&amp;quot;PMID: 27605678&amp;quot; /&amp;gt;&amp;lt;ref name=&amp;quot;PMID:24970085&amp;quot;&amp;gt;PMID:24970085&amp;lt;/ref&amp;gt;. Binding of the &amp;lt;scene name=&#039;76/761695/Lamp1bindingsite/10&#039;&amp;gt;LAMP1&amp;lt;/scene&amp;gt; endosomal compartment triggers the spikes.&lt;br /&gt;
=== Histidine Triad===&lt;br /&gt;
Included in this structure is a unique &amp;lt;scene name=&#039;76/761695/Histriad/7&#039;&amp;gt;triad of histidines&amp;lt;/scene&amp;gt; that is highly conserved among OW arenaviruses. Located on the β-sheet face of GP1, the histidine triad is a structural element that directly interacts with LAMP1 and helps stabilize a LAMP1-&amp;quot;compatible&amp;quot; conformation by providing a molecular mechanism for the pH-dependent receptor switching&amp;lt;ref name=&amp;quot;PMID: 25972533&amp;quot; /&amp;gt;. The &amp;lt;scene name=&#039;76/761695/Lamp1bindingsite/5&#039;&amp;gt;histidine triad&amp;lt;/scene&amp;gt; is critical in forming a &amp;lt;scene name=&#039;76/761695/Lamp1bindingsite/9&#039;&amp;gt;binding site&amp;lt;/scene&amp;gt; for LAMP1&amp;lt;ref name=&amp;quot;PMID: 28448640&amp;quot;&amp;gt;PMID: 28448640 &amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 27605678&amp;quot;&amp;gt;PMID: 27605678 &amp;lt;/ref&amp;gt;.&lt;br /&gt;
==Resources==&lt;br /&gt;
For more information on this protein structure visit the following sites: [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4zjf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4zjf OCA], [http://pdbe.org/4zjf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4zjf RCSB], [http://www.ebi.ac.uk/pdbsum/4zjf PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4zjf ProSAT]&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
== References ==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;br /&gt;
[[Category: Cohen, N]]&lt;br /&gt;
[[Category: Cohen-Dvashi, H]]&lt;br /&gt;
[[Category: Diskin, R]]&lt;br /&gt;
[[Category: Israeli, H]]&lt;br /&gt;
[[Category: Arenavirus]]&lt;br /&gt;
[[Category: Glycoprotein]]&lt;br /&gt;
[[Category: Lassa]]&lt;br /&gt;
[[Category: LASV]]&lt;br /&gt;
[[Category: Receptor binding]]&lt;br /&gt;
[[Category: Viral protein]]&lt;br /&gt;
[[Category: 4zjf]]&lt;br /&gt;
[[Category: GP1]]&lt;/div&gt;</summary>
		<author><name>Rebecca Holstein</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Elizeu/sandbox/citocromo_c&amp;diff=2758153</id>
		<title>Elizeu/sandbox/citocromo c</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Elizeu/sandbox/citocromo_c&amp;diff=2758153"/>
		<updated>2017-08-09T13:40:51Z</updated>

		<summary type="html">&lt;p&gt;Rebecca Holstein: Replacing page with &amp;#039;This is the sandbox page.&amp;#039;&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;This is the sandbox page.&lt;/div&gt;</summary>
		<author><name>Rebecca Holstein</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=GP1_of_Lassa_Virus&amp;diff=2758152</id>
		<title>GP1 of Lassa Virus</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=GP1_of_Lassa_Virus&amp;diff=2758152"/>
		<updated>2017-08-09T13:39:50Z</updated>

		<summary type="html">&lt;p&gt;Rebecca Holstein: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;StructureSection load=&#039;4zjf&#039; size=&#039;340&#039; side=&#039;right&#039; caption=&#039;4ZJF structure&#039; scene=&#039;76/761695/4zjf_chaina/3&#039;&amp;gt;&lt;br /&gt;
==Importance==&lt;br /&gt;
Lassa virus (LASV), an Old World (OW) [http://en.wikipedia.org/wiki/Arenavirus arenavirus], is a notorious disease-causing agent primarily in West Africa that is able to spread from rodents to humans. This deadly pathogen causes severe viral hemorrhagic fevers and significant mortality. So far, there are no available vaccines for LASV, and only one successful vaccine against another virus found in the &#039;&#039;Arenaviridae&#039;&#039; family: Junin virus&amp;lt;ref name=&amp;quot;PMID: 9466512&amp;quot;&amp;gt;PMID: 9466512 &amp;lt;/ref&amp;gt;. Structural data at atomic resolution for viral proteins are laying the foundation for better understanding both the biology behind viral proteins and ways to combat against them. Determining the structure of the complete trimeric glycoprotein complex (GPC), composed of GP1, GP2, and SSP (stable signal peptide), will pave the path towards a future discovery of novel antiviral drugs. This is the first representative structure for OW arenaviruses. This structure reveals the overall architecture of GP1 domains from OW arenaviruses and important information relating to the mechanisms for pH switching and the binding of LASV to [[LAMP1]] (Lysosome-associated membrane glycoprotein), a recently identified host receptor that is critical for successful infection. In addition, structural analysis suggests two novel immune evasion mechanisms that LASV may utilize to escape antibody-based immune response.&lt;br /&gt;
==Function==&lt;br /&gt;
&#039;&#039;&#039;GP1&#039;&#039;&#039; (Glycoprotein 1) is the receptor binding domain of LASV that mediates receptor recognition. Research thus far indicates that GP1 from LASV may undergo irreversible conformational changes that could serve as an immunological decoy mechanism. Arenaviruses utilize various cell surface proteins as their cellular receptors for recognizing and attaching to target cells. New World (NW) arenaviruses that belong to clades A and B use transferrin receptor 1 (TfR1)&amp;lt;ref name=&amp;quot;PMID:17287727&amp;quot;&amp;gt;PMID:17287727&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID:24920811&amp;quot;&amp;gt;PMID:24920811&amp;lt;/ref&amp;gt;, whereas OW arenaviruses, as well as clade C NW arenaviruses, use α-dystroglycan (α-DG) &amp;lt;ref name=&amp;quot;PMID:9851928&amp;quot;&amp;gt;PMID:9851928&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID:15857984&amp;quot;&amp;gt;PMID:15857984&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID:11967329&amp;quot;&amp;gt;PMID:11967329&amp;lt;/ref&amp;gt;. A trimeric class 1 viral glycoprotein complex (the spike complex) recognizes the cellular receptors and mediates membrane fusion upon exposure to low pH at the lysosome &amp;lt;ref name=&amp;quot;PMID:16731928&amp;quot;&amp;gt;PMID:16731928&amp;lt;/ref&amp;gt;. The spike complex is expressed as a glycoprotein precursor that is cleaved into three segments by a signal peptidase and SKI-1/S1P protease&amp;lt;ref name=&amp;quot;PMID:21612810&amp;quot;&amp;gt;PMID:21612810&amp;lt;/ref&amp;gt;. The functional spike complex consists of GP1, a membrane-anchored fusion protein (GP2), and a unique structured SSP &amp;lt;ref name=&amp;quot;PMID:23202458&amp;quot;&amp;gt;PMID:23202458&amp;lt;/ref&amp;gt;.&lt;br /&gt;
==Structural Highlights==&lt;br /&gt;
GP1 of LASV is a single chain structure with attached &amp;lt;scene name=&#039;76/761695/Nag/3&#039;&amp;gt;NAG&amp;lt;/scene&amp;gt; glycans. The overall architecture of GP1 features a central β-sheet and two distinct halves: a glycosylated half containing the receptor-binding site that is made mostly by the central β-sheet and surrounding loops and a half that contains mostly helices and most likely faces the trimer axis)&amp;lt;ref name=&amp;quot;PMID: 25972533&amp;quot;&amp;gt;PMID: 25972533&amp;lt;/ref&amp;gt;. The method used to determine this structure was [http://en.wikipedia.org/wiki/X-ray_crystallography X-ray diffraction]&lt;br /&gt;
===LAMP1 Binding Site===&lt;br /&gt;
The primary cellular receptor of LASV is α-dystroglycan (α-DG)&amp;lt;ref name=&amp;quot;PMID: 9851928&amp;quot;&amp;gt;PMID: 9851928&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 15857984&amp;quot;&amp;gt;PMID: 15857984&amp;lt;/ref&amp;gt;, which is recognized by a trimeric class 1 viral GPC (spike complex) on the viral surface&amp;lt;ref name=&amp;quot;PMID: 16731928&amp;quot;&amp;gt;PMID: 16731928&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 26849049&amp;quot;&amp;gt;PMID: 26849049&amp;lt;/ref&amp;gt;. Following successful attachment to α-DG on cells, LASV is internalized via [http://en.wikipedia.org/wiki/Pinocytosis macropinocytosis]&amp;lt;ref name=&amp;quot;PMID: 27147735&amp;quot;&amp;gt;PMID: 27147735&amp;lt;/ref&amp;gt;, and the GPC facilitates membrane fusion at the acidic environment of a late endosomal compartment&amp;lt;ref name=&amp;quot;PMID: 16731928&amp;quot;&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 21931550&amp;quot;&amp;gt;PMID: 21931550 &amp;lt;/ref&amp;gt;. Recent studies have shown that successful infection by LASV requires it to switch in a pH-dependent manner from α-DG to LAMP1&amp;lt;ref name=&amp;quot;PMID: 27605678&amp;quot; /&amp;gt;&amp;lt;ref name=&amp;quot;PMID:24970085&amp;quot;&amp;gt;PMID:24970085&amp;lt;/ref&amp;gt;. Binding of the &amp;lt;scene name=&#039;76/761695/Lamp1bindingsite/10&#039;&amp;gt;LAMP1&amp;lt;/scene&amp;gt; endosomal compartment triggers the spikes.&lt;br /&gt;
=== Histidine Triad===&lt;br /&gt;
Included in this structure is a unique &amp;lt;scene name=&#039;76/761695/Histriad/7&#039;&amp;gt;triad of histidines&amp;lt;/scene&amp;gt; that is highly conserved among OW arenaviruses. Located on the β-sheet face of GP1, the histidine triad is a structural element that directly interacts with LAMP1 and helps stabilize a LAMP1-&amp;quot;compatible&amp;quot; conformation by providing a molecular mechanism for the pH-dependent receptor switching&amp;lt;ref name=&amp;quot;PMID: 25972533&amp;quot; /&amp;gt;. The &amp;lt;scene name=&#039;76/761695/Lamp1bindingsite/5&#039;&amp;gt;histidine triad&amp;lt;/scene&amp;gt; is critical in forming a &amp;lt;scene name=&#039;76/761695/Lamp1bindingsite/9&#039;&amp;gt;binding site&amp;lt;/scene&amp;gt; for LAMP1&amp;lt;ref name=&amp;quot;PMID: 28448640&amp;quot;&amp;gt;PMID: 28448640 &amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 27605678&amp;quot;&amp;gt;PMID: 27605678 &amp;lt;/ref&amp;gt;.&lt;br /&gt;
==Resources==&lt;br /&gt;
For more information on this protein structure visit the following sites: [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4zjf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4zjf OCA], [http://pdbe.org/4zjf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4zjf RCSB], [http://www.ebi.ac.uk/pdbsum/4zjf PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4zjf ProSAT]&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
== References ==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Rebecca Holstein</name></author>
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		<id>https://proteopedia.org/index.php?title=Sandbox_9990&amp;diff=2757095</id>
		<title>Sandbox 9990</title>
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		<updated>2017-08-08T13:19:23Z</updated>

		<summary type="html">&lt;p&gt;Rebecca Holstein: &lt;/p&gt;
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&amp;lt;StructureSection load=&#039;4zjf&#039; size=&#039;350&#039; side=&#039;right&#039; caption=&#039;GP1 of Lassa Virus&#039; scene=&#039;&#039;&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&amp;lt;scene name=&#039;76/762309/Histriad/1&#039;&amp;gt;Histidine triad&amp;lt;/scene&amp;gt; of the GP1 of Lassa Virus&lt;br /&gt;
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== Function ==&lt;br /&gt;
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== References ==&lt;br /&gt;
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		<author><name>Rebecca Holstein</name></author>
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		<title>Sandbox 9990</title>
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		<updated>2017-08-08T13:13:07Z</updated>

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&amp;lt;StructureSection load=&#039;4zjf&#039; size=&#039;350&#039; side=&#039;right&#039; caption=&#039;GP1 of Lassa Virus&#039; scene=&#039;&#039;&amp;gt;&lt;br /&gt;
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Histidine triad of the GP1 of Lassa Virus&lt;br /&gt;
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		<author><name>Rebecca Holstein</name></author>
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		<updated>2017-08-08T13:04:15Z</updated>

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		<updated>2017-08-08T13:02:18Z</updated>

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== References ==&lt;br /&gt;
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		<updated>2017-08-08T12:56:10Z</updated>

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== Function ==&lt;br /&gt;
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		<updated>2017-08-08T12:55:26Z</updated>

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== Function ==&lt;br /&gt;
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== Structural highlights ==&lt;br /&gt;
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== References ==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Rebecca Holstein</name></author>
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		<updated>2017-08-08T12:52:51Z</updated>

		<summary type="html">&lt;p&gt;Rebecca Holstein: &lt;/p&gt;
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== Function ==&lt;br /&gt;
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This is a sample scene created with SAT to &amp;lt;scene name=&amp;quot;/12/3456/Sample/1&amp;quot;&amp;gt;color&amp;lt;/scene&amp;gt; by Group, and another to make &amp;lt;scene name=&amp;quot;/12/3456/Sample/2&amp;quot;&amp;gt;a transparent representation&amp;lt;/scene&amp;gt; of the protein. You can make your own scenes on SAT starting from scratch or loading and editing one of these sample scenes.&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
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== References ==&lt;br /&gt;
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		<author><name>Rebecca Holstein</name></author>
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		<updated>2017-08-08T12:47:01Z</updated>

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== Function ==&lt;br /&gt;
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== References ==&lt;br /&gt;
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		<author><name>Rebecca Holstein</name></author>
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		<updated>2017-08-08T12:43:44Z</updated>

		<summary type="html">&lt;p&gt;Rebecca Holstein: &lt;/p&gt;
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&amp;lt;StructureSection load=&#039;4zjf&#039; size=&#039;350&#039; side=&#039;right&#039; caption=&#039;GP1 of Lassa Virus&#039; scene=&#039;&#039;&amp;gt;&lt;br /&gt;
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== Function ==&lt;br /&gt;
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&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
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== References ==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Rebecca Holstein</name></author>
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		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Sandbox_9990&amp;diff=2757086"/>
		<updated>2017-08-08T12:42:09Z</updated>

		<summary type="html">&lt;p&gt;Rebecca Holstein: New page:  This is a default text for your page &amp;#039;&amp;#039;&amp;#039;Sandbox 9990&amp;#039;&amp;#039;&amp;#039;. Click above on &amp;#039;&amp;#039;&amp;#039;edit this page&amp;#039;&amp;#039;&amp;#039; to modify. Be careful with the &amp;amp;lt; and &amp;amp;gt; signs. You may include any references to papers a...&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&lt;br /&gt;
This is a default text for your page &#039;&#039;&#039;Sandbox 9990&#039;&#039;&#039;. Click above on &#039;&#039;&#039;edit this page&#039;&#039;&#039; to modify. Be careful with the &amp;amp;lt; and &amp;amp;gt; signs.&lt;br /&gt;
You may include any references to papers as in: the use of JSmol in Proteopedia &amp;lt;ref&amp;gt;DOI 10.1002/ijch.201300024&amp;lt;/ref&amp;gt; or to the article describing Jmol &amp;lt;ref&amp;gt;PMID:21638687&amp;lt;/ref&amp;gt; to the rescue.&lt;br /&gt;
&lt;br /&gt;
== Function ==&lt;br /&gt;
&lt;br /&gt;
== Disease ==&lt;br /&gt;
&lt;br /&gt;
== Relevance ==&lt;br /&gt;
&lt;br /&gt;
== Structural highlights ==&lt;br /&gt;
&lt;br /&gt;
This is a sample scene created with SAT to &amp;lt;scene name=&amp;quot;/12/3456/Sample/1&amp;quot;&amp;gt;color&amp;lt;/scene&amp;gt; by Group, and another to make &amp;lt;scene name=&amp;quot;/12/3456/Sample/2&amp;quot;&amp;gt;a transparent representation&amp;lt;/scene&amp;gt; of the protein. You can make your own scenes on SAT starting from scratch or loading and editing one of these sample scenes.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== References ==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;/div&gt;</summary>
		<author><name>Rebecca Holstein</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Elizeu/sandbox/citocromo_c&amp;diff=2757079</id>
		<title>Elizeu/sandbox/citocromo c</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Elizeu/sandbox/citocromo_c&amp;diff=2757079"/>
		<updated>2017-08-07T15:24:16Z</updated>

		<summary type="html">&lt;p&gt;Rebecca Holstein: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;==Importance==&lt;br /&gt;
Lassa virus (LASV), an Old World (OW) [http://en.wikipedia.org/wiki/Arenavirus arenavirus], is a notorious disease-causing agent primarily in West Africa that is able to spread from rodents to humans. This deadly pathogen causes severe viral hemorrhagic fevers and significant mortality. So far, there are no available vaccines for LASV, and only one successful vaccine against another virus found in the &#039;&#039;Arenaviridae&#039;&#039; family: Junin virus&amp;lt;ref name=&amp;quot;PMID: 9466512&amp;quot;&amp;gt;PMID: 9466512 &amp;lt;/ref&amp;gt;. Structural data at atomic resolution for viral proteins are laying the foundation for better understanding both the biology behind viral proteins and ways to combat against them. Determining the structure of the complete trimeric glycoprotein complex (GPC), composed of GP1, GP2, and SSP (stable signal peptide), will pave the path towards a future discovery of novel antiviral drugs. This is the first representative structure for OW arenaviruses. This structure reveals the overall architecture of GP1 domains from OW arenaviruses and important information relating to the mechanisms for pH switching and the binding of LASV to [[LAMP1]] (Lysosome-associated membrane glycoprotein), a recently identified host receptor that is critical for successful infection. In addition, structural analysis suggests two novel immune evasion mechanisms that LASV may utilize to escape antibody-based immune response.&lt;br /&gt;
== Function ==&lt;br /&gt;
&#039;&#039;&#039;GP1&#039;&#039;&#039; (Glycoprotein 1) is the receptor binding domain of LASV that mediates receptor recognition. Research thus far indicates that GP1 from LASV may undergo irreversible conformational changes that could serve as an immunological decoy mechanism. Arenaviruses utilize various cell surface proteins as their cellular receptors for recognizing and attaching to target cells. New World (NW) arenaviruses that belong to clades A and B use transferrin receptor 1 (TfR1)&amp;lt;ref name=&amp;quot;PMID:17287727&amp;quot;&amp;gt;PMID:17287727&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID:24920811&amp;quot;&amp;gt;PMID:24920811&amp;lt;/ref&amp;gt;, whereas OW arenaviruses, as well as clade C NW arenaviruses, use α-dystroglycan (α-DG) &amp;lt;ref name=&amp;quot;PMID:9851928&amp;quot;&amp;gt;PMID:9851928&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID:15857984&amp;quot;&amp;gt;PMID:15857984&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID:11967329&amp;quot;&amp;gt;PMID:11967329&amp;lt;/ref&amp;gt;. A trimeric class 1 viral glycoprotein complex (the spike complex) recognizes the cellular receptors and mediates membrane fusion upon exposure to low pH at the lysosome &amp;lt;ref name=&amp;quot;PMID:16731928&amp;quot;&amp;gt;PMID:16731928&amp;lt;/ref&amp;gt;. The spike complex is expressed as a glycoprotein precursor that is cleaved into three segments by a signal peptidase and SKI-1/S1P protease&amp;lt;ref name=&amp;quot;PMID:21612810&amp;quot;&amp;gt;PMID:21612810&amp;lt;/ref&amp;gt;. The functional spike complex consists of GP1, a membrane-anchored fusion protein (GP2), and a unique structured SSP &amp;lt;ref name=&amp;quot;PMID:23202458&amp;quot;&amp;gt;PMID:23202458&amp;lt;/ref&amp;gt;.                                                                                                                                                                                                                                                                                                                                                                                         &lt;br /&gt;
==Structural Highlights==&lt;br /&gt;
GP1 of LASV is a single chain structure with attached NAG glycans. The overall architecture of GP1 features a central β-sheet and two distinct halves: a glycosylated half containing the receptor-binding site that is made mostly by the central β-sheet and surrounding loops and a half that contains mostly helices and most likely faces the trimer axis)&amp;lt;ref name=&amp;quot;PMID: 25972533&amp;quot;&amp;gt;PMID: 25972533&amp;lt;/ref&amp;gt;. The method used to determine this structure was [http://en.wikipedia.org/wiki/X-ray_crystallography X-ray diffraction]&lt;br /&gt;
===LAMP1 Binding Site===&lt;br /&gt;
The primary cellular receptor of LASV is α-dystroglycan (α-DG)&amp;lt;ref name=&amp;quot;PMID: 9851928&amp;quot;&amp;gt;PMID: 9851928&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 15857984&amp;quot;&amp;gt;PMID: 15857984&amp;lt;/ref&amp;gt;, which is recognized by a trimeric class 1 viral GPC (spike complex) on the viral surface&amp;lt;ref name=&amp;quot;PMID: 16731928&amp;quot;&amp;gt;PMID: 16731928&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 26849049&amp;quot;&amp;gt;PMID: 26849049&amp;lt;/ref&amp;gt;. Following successful attachment to α-DG on cells, LASV is internalized via [http://en.wikipedia.org/wiki/Pinocytosis macropinocytosis]&amp;lt;ref name=&amp;quot;PMID: 27147735&amp;quot;&amp;gt;PMID: 27147735&amp;lt;/ref&amp;gt;, and the GPC facilitates membrane fusion at the acidic environment of a late endosomal compartment&amp;lt;ref name=&amp;quot;PMID: 16731928&amp;quot;&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 21931550&amp;quot;&amp;gt;PMID: 21931550 &amp;lt;/ref&amp;gt;. Recent studies have shown that successful infection by LASV requires it to switch in a pH-dependent manner from α-DG to LAMP1&amp;lt;ref name=&amp;quot;PMID: 27605678&amp;quot; /&amp;gt;&amp;lt;ref name=&amp;quot;PMID:24970085&amp;quot;&amp;gt;PMID:24970085&amp;lt;/ref&amp;gt;. Binding of the LAMP1 endosomal compartment triggers the spikes. &lt;br /&gt;
=== Histidine Triad===&lt;br /&gt;
Included in this structure is a unique triad of histidines that is highly conserved among OW arenaviruses. Located on the β-sheet face of GP1,  the histidine triad is a structural element that directly interacts with LAMP1 and helps stabilize a LAMP1-&amp;quot;compatible&amp;quot; conformation by providing a molecular mechanism for the pH-dependent receptor switching&amp;lt;ref name=&amp;quot;PMID: 25972533&amp;quot; /&amp;gt;. The histidine triad is critical in forming a binding site for LAMP1&amp;lt;ref name=&amp;quot;PMID: 28448640&amp;quot;&amp;gt;PMID: 28448640 &amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 27605678&amp;quot;&amp;gt;PMID: 27605678 &amp;lt;/ref&amp;gt;.&lt;br /&gt;
==Resources==&lt;br /&gt;
For more information on this protein structure visit the following sites: [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4zjf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4zjf OCA], [http://pdbe.org/4zjf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4zjf RCSB], [http://www.ebi.ac.uk/pdbsum/4zjf PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4zjf ProSAT]&lt;br /&gt;
== References ==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;br /&gt;
[[Category: Cohen, N]]&lt;br /&gt;
[[Category: Cohen-Dvashi, H]]&lt;br /&gt;
[[Category: Diskin, R]]&lt;br /&gt;
[[Category: Israeli, H]]&lt;br /&gt;
[[Category: Arenavirus]]&lt;br /&gt;
[[Category: Glycoprotein]]&lt;br /&gt;
[[Category: Lassa]]&lt;br /&gt;
[[Category: LASV]]&lt;br /&gt;
[[Category: Receptor binding]]&lt;br /&gt;
[[Category: Viral protein]]&lt;br /&gt;
[[Category: 4zjf]]&lt;br /&gt;
[[Category: GP1]]&lt;/div&gt;</summary>
		<author><name>Rebecca Holstein</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Elizeu/sandbox/citocromo_c&amp;diff=2757078</id>
		<title>Elizeu/sandbox/citocromo c</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Elizeu/sandbox/citocromo_c&amp;diff=2757078"/>
		<updated>2017-08-07T14:52:32Z</updated>

		<summary type="html">&lt;p&gt;Rebecca Holstein: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;==Your Heading Here (maybe something like &#039;Structure&#039;)==&lt;br /&gt;
&amp;lt;StructureSection load=&#039;4zjf&#039; size=&#039;350&#039; side=&#039;right&#039; caption=&#039;GP1 of Lassa Virus&#039; scene=&#039;&#039;&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==Importance==&lt;br /&gt;
Lassa virus (LASV), an Old World (OW) [http://en.wikipedia.org/wiki/Arenavirus arenavirus], is a notorious disease-causing agent primarily in West Africa that is able to spread from rodents to humans. This deadly pathogen causes severe viral hemorrhagic fevers and significant mortality. So far, there are no available vaccines for LASV, and only one successful vaccine against another virus found in the &#039;&#039;Arenaviridae&#039;&#039; family: Junin virus&amp;lt;ref name=&amp;quot;PMID: 9466512&amp;quot;&amp;gt;PMID: 9466512 &amp;lt;/ref&amp;gt;. Structural data at atomic resolution for viral proteins are laying the foundation for better understanding both the biology behind viral proteins and ways to combat against them. Determining the structure of the complete trimeric glycoprotein complex (GPC), composed of GP1, GP2, and SSP (stable signal peptide), will pave the path towards a future discovery of novel antiviral drugs. This is the first representative structure for OW arenaviruses. This structure reveals the overall architecture of GP1 domains from OW arenaviruses and important information relating to the mechanisms for pH switching and the binding of LASV to [[LAMP1]] (Lysosome-associated membrane glycoprotein), a recently identified host receptor that is critical for successful infection. In addition, structural analysis suggests two novel immune evasion mechanisms that LASV may utilize to escape antibody-based immune response.&lt;br /&gt;
== Function ==&lt;br /&gt;
&#039;&#039;&#039;GP1&#039;&#039;&#039; (Glycoprotein 1) is the receptor binding domain of LASV that mediates receptor recognition. Research thus far indicates that GP1 from LASV may undergo irreversible conformational changes that could serve as an immunological decoy mechanism. Arenaviruses utilize various cell surface proteins as their cellular receptors for recognizing and attaching to target cells. New World (NW) arenaviruses that belong to clades A and B use transferrin receptor 1 (TfR1)&amp;lt;ref name=&amp;quot;PMID:17287727&amp;quot;&amp;gt;PMID:17287727&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID:24920811&amp;quot;&amp;gt;PMID:24920811&amp;lt;/ref&amp;gt;, whereas OW arenaviruses, as well as clade C NW arenaviruses, use α-dystroglycan (α-DG) &amp;lt;ref name=&amp;quot;PMID:9851928&amp;quot;&amp;gt;PMID:9851928&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID:15857984&amp;quot;&amp;gt;PMID:15857984&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID:11967329&amp;quot;&amp;gt;PMID:11967329&amp;lt;/ref&amp;gt;. A trimeric class 1 viral glycoprotein complex (the spike complex) recognizes the cellular receptors and mediates membrane fusion upon exposure to low pH at the lysosome &amp;lt;ref name=&amp;quot;PMID:16731928&amp;quot;&amp;gt;PMID:16731928&amp;lt;/ref&amp;gt;. The spike complex is expressed as a glycoprotein precursor that is cleaved into three segments by a signal peptidase and SKI-1/S1P protease&amp;lt;ref name=&amp;quot;PMID:21612810&amp;quot;&amp;gt;PMID:21612810&amp;lt;/ref&amp;gt;. The functional spike complex consists of GP1, a membrane-anchored fusion protein (GP2), and a unique structured SSP &amp;lt;ref name=&amp;quot;PMID:23202458&amp;quot;&amp;gt;PMID:23202458&amp;lt;/ref&amp;gt;.                                                                                                                                                                                                                                                                                                                                                                                         &lt;br /&gt;
==Structural Highlights==&lt;br /&gt;
GP1 of LASV is a single chain structure with attached &amp;lt;scene name=&#039;76/761695/Nag/3&#039;&amp;gt;NAG&amp;lt;/scene&amp;gt; glycans. The overall architecture of GP1 features a central β-sheet and two distinct halves: a glycosylated half containing the receptor-binding site that is made mostly by the central β-sheet and surrounding loops and a half that contains mostly helices and most likely faces the trimer axis)&amp;lt;ref name=&amp;quot;PMID: 25972533&amp;quot;&amp;gt;PMID: 25972533&amp;lt;/ref&amp;gt;. The method used to determine this structure was [http://en.wikipedia.org/wiki/X-ray_crystallography X-ray diffraction]&lt;br /&gt;
===LAMP1 Binding Site===&lt;br /&gt;
The primary cellular receptor of LASV is α-dystroglycan (α-DG)&amp;lt;ref name=&amp;quot;PMID: 9851928&amp;quot;&amp;gt;PMID: 9851928&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 15857984&amp;quot;&amp;gt;PMID: 15857984&amp;lt;/ref&amp;gt;, which is recognized by a trimeric class 1 viral GPC (spike complex) on the viral surface&amp;lt;ref name=&amp;quot;PMID: 16731928&amp;quot;&amp;gt;PMID: 16731928&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 26849049&amp;quot;&amp;gt;PMID: 26849049&amp;lt;/ref&amp;gt;. Following successful attachment to α-DG on cells, LASV is internalized via [http://en.wikipedia.org/wiki/Pinocytosis macropinocytosis]&amp;lt;ref name=&amp;quot;PMID: 27147735&amp;quot;&amp;gt;PMID: 27147735&amp;lt;/ref&amp;gt;, and the GPC facilitates membrane fusion at the acidic environment of a late endosomal compartment&amp;lt;ref name=&amp;quot;PMID: 16731928&amp;quot;&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 21931550&amp;quot;&amp;gt;PMID: 21931550 &amp;lt;/ref&amp;gt;. Recent studies have shown that successful infection by LASV requires it to switch in a pH-dependent manner from α-DG to LAMP1&amp;lt;ref name=&amp;quot;PMID: 27605678&amp;quot; /&amp;gt;&amp;lt;ref name=&amp;quot;PMID:24970085&amp;quot;&amp;gt;PMID:24970085&amp;lt;/ref&amp;gt;. Binding of the &amp;lt;scene name=&#039;76/761695/Lamp1bindingsite/10&#039;&amp;gt;LAMP1&amp;lt;/scene&amp;gt; endosomal compartment triggers the spikes. &lt;br /&gt;
=== Histidine Triad===&lt;br /&gt;
Included in this structure is a unique &amp;lt;scene name=&#039;76/761695/Histriad/7&#039;&amp;gt;triad of histidines&amp;lt;/scene&amp;gt; that is highly conserved among OW arenaviruses. Located on the β-sheet face of GP1,  the histidine triad is a structural element that directly interacts with LAMP1 and helps stabilize a LAMP1-&amp;quot;compatible&amp;quot; conformation by providing a molecular mechanism for the pH-dependent receptor switching&amp;lt;ref name=&amp;quot;PMID: 25972533&amp;quot; /&amp;gt;. The &amp;lt;scene name=&#039;76/761695/Lamp1bindingsite/5&#039;&amp;gt;histidine triad&amp;lt;/scene&amp;gt; is critical in forming a &amp;lt;scene name=&#039;76/761695/Lamp1bindingsite/9&#039;&amp;gt;binding site&amp;lt;/scene&amp;gt; for LAMP1&amp;lt;ref name=&amp;quot;PMID: 28448640&amp;quot;&amp;gt;PMID: 28448640 &amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 27605678&amp;quot;&amp;gt;PMID: 27605678 &amp;lt;/ref&amp;gt;.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==Resources==&lt;br /&gt;
For more information on this protein structure visit the following sites: [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4zjf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4zjf OCA], [http://pdbe.org/4zjf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4zjf RCSB], [http://www.ebi.ac.uk/pdbsum/4zjf PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4zjf ProSAT]&lt;br /&gt;
== References ==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;br /&gt;
[[Category: Cohen, N]]&lt;br /&gt;
[[Category: Cohen-Dvashi, H]]&lt;br /&gt;
[[Category: Diskin, R]]&lt;br /&gt;
[[Category: Israeli, H]]&lt;br /&gt;
[[Category: Arenavirus]]&lt;br /&gt;
[[Category: Glycoprotein]]&lt;br /&gt;
[[Category: Lassa]]&lt;br /&gt;
[[Category: LASV]]&lt;br /&gt;
[[Category: Receptor binding]]&lt;br /&gt;
[[Category: Viral protein]]&lt;br /&gt;
[[Category: 4zjf]]&lt;br /&gt;
[[Category: GP1]]&lt;/div&gt;</summary>
		<author><name>Rebecca Holstein</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Elizeu/sandbox/citocromo_c&amp;diff=2757077</id>
		<title>Elizeu/sandbox/citocromo c</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Elizeu/sandbox/citocromo_c&amp;diff=2757077"/>
		<updated>2017-08-07T14:49:08Z</updated>

		<summary type="html">&lt;p&gt;Rebecca Holstein: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;==Your Heading Here (maybe something like &#039;Structure&#039;)==&lt;br /&gt;
&amp;lt;StructureSection load=&#039;3rec&#039; size=&#039;350&#039; side=&#039;right&#039; caption=&#039;Escherichia coli reca protein-bound DNA (PDB entry [[3rec]])&#039; scene=&#039;&#039;&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Anything in this section will appear adjacent to the 3D structure and will be scrollable.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
==Importance==&lt;br /&gt;
Lassa virus (LASV), an Old World (OW) [http://en.wikipedia.org/wiki/Arenavirus arenavirus], is a notorious disease-causing agent primarily in West Africa that is able to spread from rodents to humans. This deadly pathogen causes severe viral hemorrhagic fevers and significant mortality. So far, there are no available vaccines for LASV, and only one successful vaccine against another virus found in the &#039;&#039;Arenaviridae&#039;&#039; family: Junin virus&amp;lt;ref name=&amp;quot;PMID: 9466512&amp;quot;&amp;gt;PMID: 9466512 &amp;lt;/ref&amp;gt;. Structural data at atomic resolution for viral proteins are laying the foundation for better understanding both the biology behind viral proteins and ways to combat against them. Determining the structure of the complete trimeric glycoprotein complex (GPC), composed of GP1, GP2, and SSP (stable signal peptide), will pave the path towards a future discovery of novel antiviral drugs. This is the first representative structure for OW arenaviruses. This structure reveals the overall architecture of GP1 domains from OW arenaviruses and important information relating to the mechanisms for pH switching and the binding of LASV to [[LAMP1]] (Lysosome-associated membrane glycoprotein), a recently identified host receptor that is critical for successful infection. In addition, structural analysis suggests two novel immune evasion mechanisms that LASV may utilize to escape antibody-based immune response.&lt;br /&gt;
== Function ==&lt;br /&gt;
&#039;&#039;&#039;GP1&#039;&#039;&#039; (Glycoprotein 1) is the receptor binding domain of LASV that mediates receptor recognition. Research thus far indicates that GP1 from LASV may undergo irreversible conformational changes that could serve as an immunological decoy mechanism. Arenaviruses utilize various cell surface proteins as their cellular receptors for recognizing and attaching to target cells. New World (NW) arenaviruses that belong to clades A and B use transferrin receptor 1 (TfR1)&amp;lt;ref name=&amp;quot;PMID:17287727&amp;quot;&amp;gt;PMID:17287727&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID:24920811&amp;quot;&amp;gt;PMID:24920811&amp;lt;/ref&amp;gt;, whereas OW arenaviruses, as well as clade C NW arenaviruses, use α-dystroglycan (α-DG) &amp;lt;ref name=&amp;quot;PMID:9851928&amp;quot;&amp;gt;PMID:9851928&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID:15857984&amp;quot;&amp;gt;PMID:15857984&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID:11967329&amp;quot;&amp;gt;PMID:11967329&amp;lt;/ref&amp;gt;. A trimeric class 1 viral glycoprotein complex (the spike complex) recognizes the cellular receptors and mediates membrane fusion upon exposure to low pH at the lysosome &amp;lt;ref name=&amp;quot;PMID:16731928&amp;quot;&amp;gt;PMID:16731928&amp;lt;/ref&amp;gt;. The spike complex is expressed as a glycoprotein precursor that is cleaved into three segments by a signal peptidase and SKI-1/S1P protease&amp;lt;ref name=&amp;quot;PMID:21612810&amp;quot;&amp;gt;PMID:21612810&amp;lt;/ref&amp;gt;. The functional spike complex consists of GP1, a membrane-anchored fusion protein (GP2), and a unique structured SSP &amp;lt;ref name=&amp;quot;PMID:23202458&amp;quot;&amp;gt;PMID:23202458&amp;lt;/ref&amp;gt;.                                                                                                                                                                                                                                                                                                                                                                                         &lt;br /&gt;
==Structural Highlights==&lt;br /&gt;
GP1 of LASV is a single chain structure with attached &amp;lt;scene name=&#039;76/761695/Nag/3&#039;&amp;gt;NAG&amp;lt;/scene&amp;gt; glycans. The overall architecture of GP1 features a central β-sheet and two distinct halves: a glycosylated half containing the receptor-binding site that is made mostly by the central β-sheet and surrounding loops and a half that contains mostly helices and most likely faces the trimer axis)&amp;lt;ref name=&amp;quot;PMID: 25972533&amp;quot;&amp;gt;PMID: 25972533&amp;lt;/ref&amp;gt;. The method used to determine this structure was [http://en.wikipedia.org/wiki/X-ray_crystallography X-ray diffraction]&lt;br /&gt;
===LAMP1 Binding Site===&lt;br /&gt;
The primary cellular receptor of LASV is α-dystroglycan (α-DG)&amp;lt;ref name=&amp;quot;PMID: 9851928&amp;quot;&amp;gt;PMID: 9851928&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 15857984&amp;quot;&amp;gt;PMID: 15857984&amp;lt;/ref&amp;gt;, which is recognized by a trimeric class 1 viral GPC (spike complex) on the viral surface&amp;lt;ref name=&amp;quot;PMID: 16731928&amp;quot;&amp;gt;PMID: 16731928&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 26849049&amp;quot;&amp;gt;PMID: 26849049&amp;lt;/ref&amp;gt;. Following successful attachment to α-DG on cells, LASV is internalized via [http://en.wikipedia.org/wiki/Pinocytosis macropinocytosis]&amp;lt;ref name=&amp;quot;PMID: 27147735&amp;quot;&amp;gt;PMID: 27147735&amp;lt;/ref&amp;gt;, and the GPC facilitates membrane fusion at the acidic environment of a late endosomal compartment&amp;lt;ref name=&amp;quot;PMID: 16731928&amp;quot;&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 21931550&amp;quot;&amp;gt;PMID: 21931550 &amp;lt;/ref&amp;gt;. Recent studies have shown that successful infection by LASV requires it to switch in a pH-dependent manner from α-DG to LAMP1&amp;lt;ref name=&amp;quot;PMID: 27605678&amp;quot; /&amp;gt;&amp;lt;ref name=&amp;quot;PMID:24970085&amp;quot;&amp;gt;PMID:24970085&amp;lt;/ref&amp;gt;. Binding of the &amp;lt;scene name=&#039;76/761695/Lamp1bindingsite/10&#039;&amp;gt;LAMP1&amp;lt;/scene&amp;gt; endosomal compartment triggers the spikes. &lt;br /&gt;
=== Histidine Triad===&lt;br /&gt;
Included in this structure is a unique &amp;lt;scene name=&#039;76/761695/Histriad/7&#039;&amp;gt;triad of histidines&amp;lt;/scene&amp;gt; that is highly conserved among OW arenaviruses. Located on the β-sheet face of GP1,  the histidine triad is a structural element that directly interacts with LAMP1 and helps stabilize a LAMP1-&amp;quot;compatible&amp;quot; conformation by providing a molecular mechanism for the pH-dependent receptor switching&amp;lt;ref name=&amp;quot;PMID: 25972533&amp;quot; /&amp;gt;. The &amp;lt;scene name=&#039;76/761695/Lamp1bindingsite/5&#039;&amp;gt;histidine triad&amp;lt;/scene&amp;gt; is critical in forming a &amp;lt;scene name=&#039;76/761695/Lamp1bindingsite/9&#039;&amp;gt;binding site&amp;lt;/scene&amp;gt; for LAMP1&amp;lt;ref name=&amp;quot;PMID: 28448640&amp;quot;&amp;gt;PMID: 28448640 &amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 27605678&amp;quot;&amp;gt;PMID: 27605678 &amp;lt;/ref&amp;gt;.&lt;br /&gt;
==Resources==&lt;br /&gt;
For more information on this protein structure visit the following sites: [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4zjf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4zjf OCA], [http://pdbe.org/4zjf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4zjf RCSB], [http://www.ebi.ac.uk/pdbsum/4zjf PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4zjf ProSAT]&lt;br /&gt;
== References ==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;br /&gt;
[[Category: Cohen, N]]&lt;br /&gt;
[[Category: Cohen-Dvashi, H]]&lt;br /&gt;
[[Category: Diskin, R]]&lt;br /&gt;
[[Category: Israeli, H]]&lt;br /&gt;
[[Category: Arenavirus]]&lt;br /&gt;
[[Category: Glycoprotein]]&lt;br /&gt;
[[Category: Lassa]]&lt;br /&gt;
[[Category: LASV]]&lt;br /&gt;
[[Category: Receptor binding]]&lt;br /&gt;
[[Category: Viral protein]]&lt;br /&gt;
[[Category: 4zjf]]&lt;br /&gt;
[[Category: GP1]]&lt;/div&gt;</summary>
		<author><name>Rebecca Holstein</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=GP1_of_Lassa_Virus&amp;diff=2757076</id>
		<title>GP1 of Lassa Virus</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=GP1_of_Lassa_Virus&amp;diff=2757076"/>
		<updated>2017-08-07T14:48:30Z</updated>

		<summary type="html">&lt;p&gt;Rebecca Holstein: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;==Importance==&lt;br /&gt;
Lassa virus (LASV), an Old World (OW) [http://en.wikipedia.org/wiki/Arenavirus arenavirus], is a notorious disease-causing agent primarily in West Africa that is able to spread from rodents to humans. This deadly pathogen causes severe viral hemorrhagic fevers and significant mortality. So far, there are no available vaccines for LASV, and only one successful vaccine against another virus found in the &#039;&#039;Arenaviridae&#039;&#039; family: Junin virus&amp;lt;ref name=&amp;quot;PMID: 9466512&amp;quot;&amp;gt;PMID: 9466512 &amp;lt;/ref&amp;gt;. Structural data at atomic resolution for viral proteins are laying the foundation for better understanding both the biology behind viral proteins and ways to combat against them. Determining the structure of the complete trimeric glycoprotein complex (GPC), composed of GP1, GP2, and SSP (stable signal peptide), will pave the path towards a future discovery of novel antiviral drugs. This is the first representative structure for OW arenaviruses. This structure reveals the overall architecture of GP1 domains from OW arenaviruses and important information relating to the mechanisms for pH switching and the binding of LASV to [[LAMP1]] (Lysosome-associated membrane glycoprotein), a recently identified host receptor that is critical for successful infection. In addition, structural analysis suggests two novel immune evasion mechanisms that LASV may utilize to escape antibody-based immune response.&lt;br /&gt;
== Function ==&lt;br /&gt;
&#039;&#039;&#039;GP1&#039;&#039;&#039; (Glycoprotein 1) is the receptor binding domain of LASV that mediates receptor recognition. Research thus far indicates that GP1 from LASV may undergo irreversible conformational changes that could serve as an immunological decoy mechanism. Arenaviruses utilize various cell surface proteins as their cellular receptors for recognizing and attaching to target cells. New World (NW) arenaviruses that belong to clades A and B use transferrin receptor 1 (TfR1)&amp;lt;ref name=&amp;quot;PMID:17287727&amp;quot;&amp;gt;PMID:17287727&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID:24920811&amp;quot;&amp;gt;PMID:24920811&amp;lt;/ref&amp;gt;, whereas OW arenaviruses, as well as clade C NW arenaviruses, use α-dystroglycan (α-DG) &amp;lt;ref name=&amp;quot;PMID:9851928&amp;quot;&amp;gt;PMID:9851928&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID:15857984&amp;quot;&amp;gt;PMID:15857984&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID:11967329&amp;quot;&amp;gt;PMID:11967329&amp;lt;/ref&amp;gt;. A trimeric class 1 viral glycoprotein complex (the spike complex) recognizes the cellular receptors and mediates membrane fusion upon exposure to low pH at the lysosome &amp;lt;ref name=&amp;quot;PMID:16731928&amp;quot;&amp;gt;PMID:16731928&amp;lt;/ref&amp;gt;. The spike complex is expressed as a glycoprotein precursor that is cleaved into three segments by a signal peptidase and SKI-1/S1P protease&amp;lt;ref name=&amp;quot;PMID:21612810&amp;quot;&amp;gt;PMID:21612810&amp;lt;/ref&amp;gt;. The functional spike complex consists of GP1, a membrane-anchored fusion protein (GP2), and a unique structured SSP &amp;lt;ref name=&amp;quot;PMID:23202458&amp;quot;&amp;gt;PMID:23202458&amp;lt;/ref&amp;gt;.                                                                                                                                                                                                                                                                                                                                                                                         &lt;br /&gt;
==Structural Highlights==&lt;br /&gt;
GP1 of LASV is a single chain structure with attached NAG glycans. The overall architecture of GP1 features a central β-sheet and two distinct halves: a glycosylated half containing the receptor-binding site that is made mostly by the central β-sheet and surrounding loops and a half that contains mostly helices and most likely faces the trimer axis)&amp;lt;ref name=&amp;quot;PMID: 25972533&amp;quot;&amp;gt;PMID: 25972533&amp;lt;/ref&amp;gt;. The method used to determine this structure was [http://en.wikipedia.org/wiki/X-ray_crystallography X-ray diffraction]&lt;br /&gt;
===LAMP1 Binding Site===&lt;br /&gt;
The primary cellular receptor of LASV is α-dystroglycan (α-DG)&amp;lt;ref name=&amp;quot;PMID: 9851928&amp;quot;&amp;gt;PMID: 9851928&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 15857984&amp;quot;&amp;gt;PMID: 15857984&amp;lt;/ref&amp;gt;, which is recognized by a trimeric class 1 viral GPC (spike complex) on the viral surface&amp;lt;ref name=&amp;quot;PMID: 16731928&amp;quot;&amp;gt;PMID: 16731928&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 26849049&amp;quot;&amp;gt;PMID: 26849049&amp;lt;/ref&amp;gt;. Following successful attachment to α-DG on cells, LASV is internalized via [http://en.wikipedia.org/wiki/Pinocytosis macropinocytosis]&amp;lt;ref name=&amp;quot;PMID: 27147735&amp;quot;&amp;gt;PMID: 27147735&amp;lt;/ref&amp;gt;, and the GPC facilitates membrane fusion at the acidic environment of a late endosomal compartment&amp;lt;ref name=&amp;quot;PMID: 16731928&amp;quot;&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 21931550&amp;quot;&amp;gt;PMID: 21931550 &amp;lt;/ref&amp;gt;. Recent studies have shown that successful infection by LASV requires it to switch in a pH-dependent manner from α-DG to LAMP1&amp;lt;ref name=&amp;quot;PMID: 27605678&amp;quot; /&amp;gt;&amp;lt;ref name=&amp;quot;PMID:24970085&amp;quot;&amp;gt;PMID:24970085&amp;lt;/ref&amp;gt;. Binding of the LAMP1 endosomal compartment triggers the spikes. &lt;br /&gt;
=== Histidine Triad===&lt;br /&gt;
Included in this structure is a unique triad of histidines that is highly conserved among OW arenaviruses. Located on the β-sheet face of GP1,  the histidine triad is a structural element that directly interacts with LAMP1 and helps stabilize a LAMP1-&amp;quot;compatible&amp;quot; conformation by providing a molecular mechanism for the pH-dependent receptor switching&amp;lt;ref name=&amp;quot;PMID: 25972533&amp;quot; /&amp;gt;. The histidine triad is critical in forming a binding site for LAMP1&amp;lt;ref name=&amp;quot;PMID: 28448640&amp;quot;&amp;gt;PMID: 28448640 &amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 27605678&amp;quot;&amp;gt;PMID: 27605678 &amp;lt;/ref&amp;gt;.&lt;br /&gt;
==Resources==&lt;br /&gt;
For more information on this protein structure visit the following sites: [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4zjf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4zjf OCA], [http://pdbe.org/4zjf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4zjf RCSB], [http://www.ebi.ac.uk/pdbsum/4zjf PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4zjf ProSAT]&lt;br /&gt;
&lt;br /&gt;
== References ==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;br /&gt;
[[Category: Cohen, N]]&lt;br /&gt;
[[Category: Cohen-Dvashi, H]]&lt;br /&gt;
[[Category: Diskin, R]]&lt;br /&gt;
[[Category: Israeli, H]]&lt;br /&gt;
[[Category: Arenavirus]]&lt;br /&gt;
[[Category: Glycoprotein]]&lt;br /&gt;
[[Category: Lassa]]&lt;br /&gt;
[[Category: LASV]]&lt;br /&gt;
[[Category: Receptor binding]]&lt;br /&gt;
[[Category: Viral protein]]&lt;br /&gt;
[[Category: 4zjf]]&lt;br /&gt;
[[Category: GP1]]&lt;/div&gt;</summary>
		<author><name>Rebecca Holstein</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Elizeu/sandbox/citocromo_c&amp;diff=2757075</id>
		<title>Elizeu/sandbox/citocromo c</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Elizeu/sandbox/citocromo_c&amp;diff=2757075"/>
		<updated>2017-08-07T14:41:44Z</updated>

		<summary type="html">&lt;p&gt;Rebecca Holstein: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;StructureSection load=&#039;4zjf&#039; size=&#039;350&#039; side=&#039;right&#039; caption=&#039;GP1 of Lassa Virus&#039; scene=&#039;&#039;&amp;gt;&lt;br /&gt;
==Importance==&lt;br /&gt;
Lassa virus (LASV), an Old World (OW) [http://en.wikipedia.org/wiki/Arenavirus arenavirus], is a notorious disease-causing agent primarily in West Africa that is able to spread from rodents to humans. This deadly pathogen causes severe viral hemorrhagic fevers and significant mortality. So far, there are no available vaccines for LASV, and only one successful vaccine against another virus found in the &#039;&#039;Arenaviridae&#039;&#039; family: Junin virus&amp;lt;ref name=&amp;quot;PMID: 9466512&amp;quot;&amp;gt;PMID: 9466512 &amp;lt;/ref&amp;gt;. Structural data at atomic resolution for viral proteins are laying the foundation for better understanding both the biology behind viral proteins and ways to combat against them. Determining the structure of the complete trimeric glycoprotein complex (GPC), composed of GP1, GP2, and SSP (stable signal peptide), will pave the path towards a future discovery of novel antiviral drugs. This is the first representative structure for OW arenaviruses. This structure reveals the overall architecture of GP1 domains from OW arenaviruses and important information relating to the mechanisms for pH switching and the binding of LASV to [[LAMP1]] (Lysosome-associated membrane glycoprotein), a recently identified host receptor that is critical for successful infection. In addition, structural analysis suggests two novel immune evasion mechanisms that LASV may utilize to escape antibody-based immune response.&lt;br /&gt;
== Function ==&lt;br /&gt;
&#039;&#039;&#039;GP1&#039;&#039;&#039; (Glycoprotein 1) is the receptor binding domain of LASV that mediates receptor recognition. Research thus far indicates that GP1 from LASV may undergo irreversible conformational changes that could serve as an immunological decoy mechanism. Arenaviruses utilize various cell surface proteins as their cellular receptors for recognizing and attaching to target cells. New World (NW) arenaviruses that belong to clades A and B use transferrin receptor 1 (TfR1)&amp;lt;ref name=&amp;quot;PMID:17287727&amp;quot;&amp;gt;PMID:17287727&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID:24920811&amp;quot;&amp;gt;PMID:24920811&amp;lt;/ref&amp;gt;, whereas OW arenaviruses, as well as clade C NW arenaviruses, use α-dystroglycan (α-DG) &amp;lt;ref name=&amp;quot;PMID:9851928&amp;quot;&amp;gt;PMID:9851928&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID:15857984&amp;quot;&amp;gt;PMID:15857984&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID:11967329&amp;quot;&amp;gt;PMID:11967329&amp;lt;/ref&amp;gt;. A trimeric class 1 viral glycoprotein complex (the spike complex) recognizes the cellular receptors and mediates membrane fusion upon exposure to low pH at the lysosome &amp;lt;ref name=&amp;quot;PMID:16731928&amp;quot;&amp;gt;PMID:16731928&amp;lt;/ref&amp;gt;. The spike complex is expressed as a glycoprotein precursor that is cleaved into three segments by a signal peptidase and SKI-1/S1P protease&amp;lt;ref name=&amp;quot;PMID:21612810&amp;quot;&amp;gt;PMID:21612810&amp;lt;/ref&amp;gt;. The functional spike complex consists of GP1, a membrane-anchored fusion protein (GP2), and a unique structured SSP &amp;lt;ref name=&amp;quot;PMID:23202458&amp;quot;&amp;gt;PMID:23202458&amp;lt;/ref&amp;gt;.                                                                                                                                                                                                                                                                                                                                                                                         &lt;br /&gt;
==Structural Highlights==&lt;br /&gt;
GP1 of LASV is a single chain structure with attached &amp;lt;scene name=&#039;76/761695/Nag/3&#039;&amp;gt;NAG&amp;lt;/scene&amp;gt; glycans. The overall architecture of GP1 features a central β-sheet and two distinct halves: a glycosylated half containing the receptor-binding site that is made mostly by the central β-sheet and surrounding loops and a half that contains mostly helices and most likely faces the trimer axis)&amp;lt;ref name=&amp;quot;PMID: 25972533&amp;quot;&amp;gt;PMID: 25972533&amp;lt;/ref&amp;gt;. The method used to determine this structure was [http://en.wikipedia.org/wiki/X-ray_crystallography X-ray diffraction]&lt;br /&gt;
===LAMP1 Binding Site===&lt;br /&gt;
The primary cellular receptor of LASV is α-dystroglycan (α-DG)&amp;lt;ref name=&amp;quot;PMID: 9851928&amp;quot;&amp;gt;PMID: 9851928&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 15857984&amp;quot;&amp;gt;PMID: 15857984&amp;lt;/ref&amp;gt;, which is recognized by a trimeric class 1 viral GPC (spike complex) on the viral surface&amp;lt;ref name=&amp;quot;PMID: 16731928&amp;quot;&amp;gt;PMID: 16731928&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 26849049&amp;quot;&amp;gt;PMID: 26849049&amp;lt;/ref&amp;gt;. Following successful attachment to α-DG on cells, LASV is internalized via [http://en.wikipedia.org/wiki/Pinocytosis macropinocytosis]&amp;lt;ref name=&amp;quot;PMID: 27147735&amp;quot;&amp;gt;PMID: 27147735&amp;lt;/ref&amp;gt;, and the GPC facilitates membrane fusion at the acidic environment of a late endosomal compartment&amp;lt;ref name=&amp;quot;PMID: 16731928&amp;quot;&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 21931550&amp;quot;&amp;gt;PMID: 21931550 &amp;lt;/ref&amp;gt;. Recent studies have shown that successful infection by LASV requires it to switch in a pH-dependent manner from α-DG to LAMP1&amp;lt;ref name=&amp;quot;PMID: 27605678&amp;quot; /&amp;gt;&amp;lt;ref name=&amp;quot;PMID:24970085&amp;quot;&amp;gt;PMID:24970085&amp;lt;/ref&amp;gt;. Binding of the &amp;lt;scene name=&#039;76/761695/Lamp1bindingsite/10&#039;&amp;gt;LAMP1&amp;lt;/scene&amp;gt; endosomal compartment triggers the spikes. &lt;br /&gt;
=== Histidine Triad===&lt;br /&gt;
Included in this structure is a unique &amp;lt;scene name=&#039;76/761695/Histriad/7&#039;&amp;gt;triad of histidines&amp;lt;/scene&amp;gt; that is highly conserved among OW arenaviruses. Located on the β-sheet face of GP1,  the histidine triad is a structural element that directly interacts with LAMP1 and helps stabilize a LAMP1-&amp;quot;compatible&amp;quot; conformation by providing a molecular mechanism for the pH-dependent receptor switching&amp;lt;ref name=&amp;quot;PMID: 25972533&amp;quot; /&amp;gt;. The &amp;lt;scene name=&#039;76/761695/Lamp1bindingsite/5&#039;&amp;gt;histidine triad&amp;lt;/scene&amp;gt; is critical in forming a &amp;lt;scene name=&#039;76/761695/Lamp1bindingsite/9&#039;&amp;gt;binding site&amp;lt;/scene&amp;gt; for LAMP1&amp;lt;ref name=&amp;quot;PMID: 28448640&amp;quot;&amp;gt;PMID: 28448640 &amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 27605678&amp;quot;&amp;gt;PMID: 27605678 &amp;lt;/ref&amp;gt;.&lt;br /&gt;
==Resources==&lt;br /&gt;
For more information on this protein structure visit the following sites: [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4zjf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4zjf OCA], [http://pdbe.org/4zjf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4zjf RCSB], [http://www.ebi.ac.uk/pdbsum/4zjf PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4zjf ProSAT]&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
== References ==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;br /&gt;
[[Category: Cohen, N]]&lt;br /&gt;
[[Category: Cohen-Dvashi, H]]&lt;br /&gt;
[[Category: Diskin, R]]&lt;br /&gt;
[[Category: Israeli, H]]&lt;br /&gt;
[[Category: Arenavirus]]&lt;br /&gt;
[[Category: Glycoprotein]]&lt;br /&gt;
[[Category: Lassa]]&lt;br /&gt;
[[Category: LASV]]&lt;br /&gt;
[[Category: Receptor binding]]&lt;br /&gt;
[[Category: Viral protein]]&lt;br /&gt;
[[Category: 4zjf]]&lt;br /&gt;
[[Category: GP1]]&lt;/div&gt;</summary>
		<author><name>Rebecca Holstein</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Elizeu/sandbox/citocromo_c&amp;diff=2757074</id>
		<title>Elizeu/sandbox/citocromo c</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Elizeu/sandbox/citocromo_c&amp;diff=2757074"/>
		<updated>2017-08-07T14:13:53Z</updated>

		<summary type="html">&lt;p&gt;Rebecca Holstein: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;==Your Heading Here (maybe something like &#039;Structure&#039;)==&lt;br /&gt;
&amp;lt;StructureSection load=&#039;3rec&#039; size=&#039;350&#039; side=&#039;right&#039; caption=&#039;Escherichia coli reca protein-bound DNA (PDB entry [[3rec]])&#039; scene=&#039;&#039;&amp;gt;In this video I will be highlighting the histidine triad on the GP1 of Lassa Virus.&amp;lt;/StructureSection&amp;gt;&lt;/div&gt;</summary>
		<author><name>Rebecca Holstein</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Elizeu/sandbox/citocromo_c&amp;diff=2757059</id>
		<title>Elizeu/sandbox/citocromo c</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Elizeu/sandbox/citocromo_c&amp;diff=2757059"/>
		<updated>2017-08-07T12:31:58Z</updated>

		<summary type="html">&lt;p&gt;Rebecca Holstein: Replacing page with &amp;#039;This is the sandbox page.&amp;#039;&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;This is the sandbox page.&lt;/div&gt;</summary>
		<author><name>Rebecca Holstein</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Elizeu/sandbox/citocromo_c&amp;diff=2757057</id>
		<title>Elizeu/sandbox/citocromo c</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Elizeu/sandbox/citocromo_c&amp;diff=2757057"/>
		<updated>2017-08-07T12:23:48Z</updated>

		<summary type="html">&lt;p&gt;Rebecca Holstein: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;Structure load=&#039;4zjf&#039; size=&#039;350&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;GP1 of Lassa Virus&#039; scene=&#039;Insert optional scene name here&#039; /&amp;gt;&lt;br /&gt;
==Importance==&lt;br /&gt;
Lassa virus (LASV), an Old World (OW) [http://en.wikipedia.org/wiki/Arenavirus arenavirus], is a notorious disease-causing agent primarily in West Africa that is able to spread from rodents to humans. This deadly pathogen causes severe viral hemorrhagic fevers and significant mortality. So far, there are no available vaccines for LASV, and only one successful vaccine against another virus found in the &#039;&#039;Arenaviridae&#039;&#039; family: Junin virus&amp;lt;ref name=&amp;quot;PMID: 9466512&amp;quot;&amp;gt;PMID: 9466512 &amp;lt;/ref&amp;gt;. Structural data at atomic resolution for viral proteins are laying the foundation for better understanding both the biology behind viral proteins and ways to combat against them. Determining the structure of the complete trimeric glycoprotein complex (GPC), composed of GP1, GP2, and SSP (stable signal peptide), will pave the path towards a future discovery of novel antiviral drugs. This is the first representative structure for OW arenaviruses. This structure reveals the overall architecture of GP1 domains from OW arenaviruses and important information relating to the mechanisms for pH switching and the binding of LASV to [[LAMP1]] (Lysosome-associated membrane glycoprotein), a recently identified host receptor that is critical for successful infection. In addition, structural analysis suggests two novel immune evasion mechanisms that LASV may utilize to escape antibody-based immune response.&lt;br /&gt;
== Function ==&lt;br /&gt;
&#039;&#039;&#039;GP1&#039;&#039;&#039; (Glycoprotein 1) is the receptor binding domain of LASV that mediates receptor recognition. Research thus far indicates that GP1 from LASV may undergo irreversible conformational changes that could serve as an immunological decoy mechanism. Arenaviruses utilize various cell surface proteins as their cellular receptors for recognizing and attaching to target cells. New World (NW) arenaviruses that belong to clades A and B use transferrin receptor 1 (TfR1)&amp;lt;ref name=&amp;quot;PMID:17287727&amp;quot;&amp;gt;PMID:17287727&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID:24920811&amp;quot;&amp;gt;PMID:24920811&amp;lt;/ref&amp;gt;, whereas OW arenaviruses, as well as clade C NW arenaviruses, use α-dystroglycan (α-DG) &amp;lt;ref name=&amp;quot;PMID:9851928&amp;quot;&amp;gt;PMID:9851928&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID:15857984&amp;quot;&amp;gt;PMID:15857984&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID:11967329&amp;quot;&amp;gt;PMID:11967329&amp;lt;/ref&amp;gt;. A trimeric class 1 viral glycoprotein complex (the spike complex) recognizes the cellular receptors and mediates membrane fusion upon exposure to low pH at the lysosome &amp;lt;ref name=&amp;quot;PMID:16731928&amp;quot;&amp;gt;PMID:16731928&amp;lt;/ref&amp;gt;. The spike complex is expressed as a glycoprotein precursor that is cleaved into three segments by a signal peptidase and SKI-1/S1P protease&amp;lt;ref name=&amp;quot;PMID:21612810&amp;quot;&amp;gt;PMID:21612810&amp;lt;/ref&amp;gt;. The functional spike complex consists of GP1, a membrane-anchored fusion protein (GP2), and a unique structured SSP &amp;lt;ref name=&amp;quot;PMID:23202458&amp;quot;&amp;gt;PMID:23202458&amp;lt;/ref&amp;gt;.                                                                                                                                                                                                                                                                                                                                                                                         &lt;br /&gt;
==Structural Highlights==&lt;br /&gt;
GP1 of LASV is a single chain structure with attached NAG glycans. The overall architecture of GP1 features a central β-sheet and two distinct halves: a glycosylated half containing the receptor-binding site that is made mostly by the central β-sheet and surrounding loops and a half that contains mostly helices and most likely faces the trimer axis)&amp;lt;ref name=&amp;quot;PMID: 25972533&amp;quot;&amp;gt;PMID: 25972533&amp;lt;/ref&amp;gt;. The method used to determine this structure was [http://en.wikipedia.org/wiki/X-ray_crystallography X-ray diffraction]&lt;br /&gt;
===LAMP1 Binding Site===&lt;br /&gt;
The primary cellular receptor of LASV is α-dystroglycan (α-DG)&amp;lt;ref name=&amp;quot;PMID: 9851928&amp;quot;&amp;gt;PMID: 9851928&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 15857984&amp;quot;&amp;gt;PMID: 15857984&amp;lt;/ref&amp;gt;, which is recognized by a trimeric class 1 viral GPC (spike complex) on the viral surface&amp;lt;ref name=&amp;quot;PMID: 16731928&amp;quot;&amp;gt;PMID: 16731928&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 26849049&amp;quot;&amp;gt;PMID: 26849049&amp;lt;/ref&amp;gt;. Following successful attachment to α-DG on cells, LASV is internalized via [http://en.wikipedia.org/wiki/Pinocytosis macropinocytosis]&amp;lt;ref name=&amp;quot;PMID: 27147735&amp;quot;&amp;gt;PMID: 27147735&amp;lt;/ref&amp;gt;, and the GPC facilitates membrane fusion at the acidic environment of a late endosomal compartment&amp;lt;ref name=&amp;quot;PMID: 16731928&amp;quot;&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 21931550&amp;quot;&amp;gt;PMID: 21931550 &amp;lt;/ref&amp;gt;. Recent studies have shown that successful infection by LASV requires it to switch in a pH-dependent manner from α-DG to LAMP1&amp;lt;ref name=&amp;quot;PMID: 27605678&amp;quot; /&amp;gt;&amp;lt;ref name=&amp;quot;PMID:24970085&amp;quot;&amp;gt;PMID:24970085&amp;lt;/ref&amp;gt;. Binding of the LAMP1 endosomal compartment triggers the spikes. &lt;br /&gt;
=== Histidine Triad===&lt;br /&gt;
Included in this structure is a unique triad of histidines that is highly conserved among OW arenaviruses. Located on the β-sheet face of GP1,  the &amp;lt;scene name=&#039;55/559112/Histriad/2&#039;&amp;gt;histidine triad&amp;lt;/scene&amp;gt; is a structural element that directly interacts with LAMP1 and helps stabilize a LAMP1-&amp;quot;compatible&amp;quot; conformation by providing a molecular mechanism for the pH-dependent receptor switching&amp;lt;ref name=&amp;quot;PMID: 25972533&amp;quot; /&amp;gt;. The histidine triad is critical in forming a binding site for LAMP1&amp;lt;ref name=&amp;quot;PMID: 28448640&amp;quot;&amp;gt;PMID: 28448640 &amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 27605678&amp;quot;&amp;gt;PMID: 27605678 &amp;lt;/ref&amp;gt;.&lt;br /&gt;
==Resources==&lt;br /&gt;
For more information on this protein structure visit the following sites: [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4zjf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4zjf OCA], [http://pdbe.org/4zjf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4zjf RCSB], [http://www.ebi.ac.uk/pdbsum/4zjf PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4zjf ProSAT]&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
== References ==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;br /&gt;
[[Category: Cohen, N]]&lt;br /&gt;
[[Category: Cohen-Dvashi, H]]&lt;br /&gt;
[[Category: Diskin, R]]&lt;br /&gt;
[[Category: Israeli, H]]&lt;br /&gt;
[[Category: Arenavirus]]&lt;br /&gt;
[[Category: Glycoprotein]]&lt;br /&gt;
[[Category: Lassa]]&lt;br /&gt;
[[Category: LASV]]&lt;br /&gt;
[[Category: Receptor binding]]&lt;br /&gt;
[[Category: Viral protein]]&lt;br /&gt;
[[Category: 4zjf]]&lt;br /&gt;
[[Category: GP1]]&lt;/div&gt;</summary>
		<author><name>Rebecca Holstein</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Elizeu/sandbox/citocromo_c&amp;diff=2757056</id>
		<title>Elizeu/sandbox/citocromo c</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Elizeu/sandbox/citocromo_c&amp;diff=2757056"/>
		<updated>2017-08-07T12:18:05Z</updated>

		<summary type="html">&lt;p&gt;Rebecca Holstein: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;Structure load=&#039;4zjf&#039; size=&#039;350&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;GP1 of Lassa Virus&#039; scene=&#039;Insert optional scene name here&#039; /&amp;gt;&lt;br /&gt;
==Importance==&lt;br /&gt;
Lassa virus (LASV), an Old World (OW) [http://en.wikipedia.org/wiki/Arenavirus arenavirus], is a notorious disease-causing agent primarily in West Africa that is able to spread from rodents to humans. This deadly pathogen causes severe viral hemorrhagic fevers and significant mortality. So far, there are no available vaccines for LASV, and only one successful vaccine against another virus found in the &#039;&#039;Arenaviridae&#039;&#039; family: Junin virus&amp;lt;ref name=&amp;quot;PMID: 9466512&amp;quot;&amp;gt;PMID: 9466512 &amp;lt;/ref&amp;gt;. Structural data at atomic resolution for viral proteins are laying the foundation for better understanding both the biology behind viral proteins and ways to combat against them. Determining the structure of the complete trimeric glycoprotein complex (GPC), composed of GP1, GP2, and SSP (stable signal peptide), will pave the path towards a future discovery of novel antiviral drugs. This is the first representative structure for OW arenaviruses. This structure reveals the overall architecture of GP1 domains from OW arenaviruses and important information relating to the mechanisms for pH switching and the binding of LASV to [[LAMP1]] (Lysosome-associated membrane glycoprotein), a recently identified host receptor that is critical for successful infection. In addition, structural analysis suggests two novel immune evasion mechanisms that LASV may utilize to escape antibody-based immune response.&lt;br /&gt;
== Function ==&lt;br /&gt;
&#039;&#039;&#039;GP1&#039;&#039;&#039; (Glycoprotein 1) is the receptor binding domain of LASV that mediates receptor recognition. Research thus far indicates that GP1 from LASV may undergo irreversible conformational changes that could serve as an immunological decoy mechanism. Arenaviruses utilize various cell surface proteins as their cellular receptors for recognizing and attaching to target cells. New World (NW) arenaviruses that belong to clades A and B use transferrin receptor 1 (TfR1)&amp;lt;ref name=&amp;quot;PMID:17287727&amp;quot;&amp;gt;PMID:17287727&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID:24920811&amp;quot;&amp;gt;PMID:24920811&amp;lt;/ref&amp;gt;, whereas OW arenaviruses, as well as clade C NW arenaviruses, use α-dystroglycan (α-DG) &amp;lt;ref name=&amp;quot;PMID:9851928&amp;quot;&amp;gt;PMID:9851928&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID:15857984&amp;quot;&amp;gt;PMID:15857984&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID:11967329&amp;quot;&amp;gt;PMID:11967329&amp;lt;/ref&amp;gt;. A trimeric class 1 viral glycoprotein complex (the spike complex) recognizes the cellular receptors and mediates membrane fusion upon exposure to low pH at the lysosome &amp;lt;ref name=&amp;quot;PMID:16731928&amp;quot;&amp;gt;PMID:16731928&amp;lt;/ref&amp;gt;. The spike complex is expressed as a glycoprotein precursor that is cleaved into three segments by a signal peptidase and SKI-1/S1P protease&amp;lt;ref name=&amp;quot;PMID:21612810&amp;quot;&amp;gt;PMID:21612810&amp;lt;/ref&amp;gt;. The functional spike complex consists of GP1, a membrane-anchored fusion protein (GP2), and a unique structured SSP &amp;lt;ref name=&amp;quot;PMID:23202458&amp;quot;&amp;gt;PMID:23202458&amp;lt;/ref&amp;gt;.                                                                                                                                                                                                                                                                                                                                                                                         &lt;br /&gt;
==Structural Highlights==&lt;br /&gt;
GP1 of LASV is a single chain structure with attached NAG glycans. The overall architecture of GP1 features a central β-sheet and two distinct halves: a glycosylated half containing the receptor-binding site that is made mostly by the central β-sheet and surrounding loops and a half that contains mostly helices and most likely faces the trimer axis)&amp;lt;ref name=&amp;quot;PMID: 25972533&amp;quot;&amp;gt;PMID: 25972533&amp;lt;/ref&amp;gt;. The method used to determine this structure was [http://en.wikipedia.org/wiki/X-ray_crystallography X-ray diffraction]&lt;br /&gt;
===LAMP1 Binding Site===&lt;br /&gt;
The primary cellular receptor of LASV is α-dystroglycan (α-DG)&amp;lt;ref name=&amp;quot;PMID: 9851928&amp;quot;&amp;gt;PMID: 9851928&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 15857984&amp;quot;&amp;gt;PMID: 15857984&amp;lt;/ref&amp;gt;, which is recognized by a trimeric class 1 viral GPC (spike complex) on the viral surface&amp;lt;ref name=&amp;quot;PMID: 16731928&amp;quot;&amp;gt;PMID: 16731928&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 26849049&amp;quot;&amp;gt;PMID: 26849049&amp;lt;/ref&amp;gt;. Following successful attachment to α-DG on cells, LASV is internalized via [http://en.wikipedia.org/wiki/Pinocytosis macropinocytosis]&amp;lt;ref name=&amp;quot;PMID: 27147735&amp;quot;&amp;gt;PMID: 27147735&amp;lt;/ref&amp;gt;, and the GPC facilitates membrane fusion at the acidic environment of a late endosomal compartment&amp;lt;ref name=&amp;quot;PMID: 16731928&amp;quot;&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 21931550&amp;quot;&amp;gt;PMID: 21931550 &amp;lt;/ref&amp;gt;. Recent studies have shown that successful infection by LASV requires it to switch in a pH-dependent manner from α-DG to LAMP1&amp;lt;ref name=&amp;quot;PMID: 27605678&amp;quot; /&amp;gt;&amp;lt;ref name=&amp;quot;PMID:24970085&amp;quot;&amp;gt;PMID:24970085&amp;lt;/ref&amp;gt;. Binding of the LAMP1 endosomal compartment triggers the spikes. &lt;br /&gt;
=== Histidine Triad===&lt;br /&gt;
Included in this structure is a unique triad of histidines that is highly conserved among OW arenaviruses. Located on the β-sheet face of GP1,  the histidine triad is a structural element that directly interacts with LAMP1 and helps stabilize a LAMP1-&amp;quot;compatible&amp;quot; conformation by providing a molecular mechanism for the pH-dependent receptor switching&amp;lt;ref name=&amp;quot;PMID: 25972533&amp;quot; /&amp;gt;. The histidine triad is critical in forming a binding site for LAMP1&amp;lt;ref name=&amp;quot;PMID: 28448640&amp;quot;&amp;gt;PMID: 28448640 &amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 27605678&amp;quot;&amp;gt;PMID: 27605678 &amp;lt;/ref&amp;gt;.&lt;br /&gt;
==Resources==&lt;br /&gt;
For more information on this protein structure visit the following sites: [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4zjf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4zjf OCA], [http://pdbe.org/4zjf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4zjf RCSB], [http://www.ebi.ac.uk/pdbsum/4zjf PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4zjf ProSAT]&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
== References ==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;br /&gt;
[[Category: Cohen, N]]&lt;br /&gt;
[[Category: Cohen-Dvashi, H]]&lt;br /&gt;
[[Category: Diskin, R]]&lt;br /&gt;
[[Category: Israeli, H]]&lt;br /&gt;
[[Category: Arenavirus]]&lt;br /&gt;
[[Category: Glycoprotein]]&lt;br /&gt;
[[Category: Lassa]]&lt;br /&gt;
[[Category: LASV]]&lt;br /&gt;
[[Category: Receptor binding]]&lt;br /&gt;
[[Category: Viral protein]]&lt;br /&gt;
[[Category: 4zjf]]&lt;br /&gt;
[[Category: GP1]]&lt;/div&gt;</summary>
		<author><name>Rebecca Holstein</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Elizeu/sandbox/citocromo_c&amp;diff=2757055</id>
		<title>Elizeu/sandbox/citocromo c</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Elizeu/sandbox/citocromo_c&amp;diff=2757055"/>
		<updated>2017-08-07T12:11:16Z</updated>

		<summary type="html">&lt;p&gt;Rebecca Holstein: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;==Importance==&lt;br /&gt;
Lassa virus (LASV), an Old World (OW) [http://en.wikipedia.org/wiki/Arenavirus arenavirus], is a notorious disease-causing agent primarily in West Africa that is able to spread from rodents to humans. This deadly pathogen causes severe viral hemorrhagic fevers and significant mortality. So far, there are no available vaccines for LASV, and only one successful vaccine against another virus found in the &#039;&#039;Arenaviridae&#039;&#039; family: Junin virus&amp;lt;ref name=&amp;quot;PMID: 9466512&amp;quot;&amp;gt;PMID: 9466512 &amp;lt;/ref&amp;gt;. Structural data at atomic resolution for viral proteins are laying the foundation for better understanding both the biology behind viral proteins and ways to combat against them. Determining the structure of the complete trimeric glycoprotein complex (GPC), composed of GP1, GP2, and SSP (stable signal peptide), will pave the path towards a future discovery of novel antiviral drugs. This is the first representative structure for OW arenaviruses. This structure reveals the overall architecture of GP1 domains from OW arenaviruses and important information relating to the mechanisms for pH switching and the binding of LASV to [[LAMP1]] (Lysosome-associated membrane glycoprotein), a recently identified host receptor that is critical for successful infection. In addition, structural analysis suggests two novel immune evasion mechanisms that LASV may utilize to escape antibody-based immune response.&lt;br /&gt;
== Function ==&lt;br /&gt;
&#039;&#039;&#039;GP1&#039;&#039;&#039; (Glycoprotein 1) is the receptor binding domain of LASV that mediates receptor recognition. Research thus far indicates that GP1 from LASV may undergo irreversible conformational changes that could serve as an immunological decoy mechanism. Arenaviruses utilize various cell surface proteins as their cellular receptors for recognizing and attaching to target cells. New World (NW) arenaviruses that belong to clades A and B use transferrin receptor 1 (TfR1)&amp;lt;ref name=&amp;quot;PMID:17287727&amp;quot;&amp;gt;PMID:17287727&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID:24920811&amp;quot;&amp;gt;PMID:24920811&amp;lt;/ref&amp;gt;, whereas OW arenaviruses, as well as clade C NW arenaviruses, use α-dystroglycan (α-DG) &amp;lt;ref name=&amp;quot;PMID:9851928&amp;quot;&amp;gt;PMID:9851928&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID:15857984&amp;quot;&amp;gt;PMID:15857984&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID:11967329&amp;quot;&amp;gt;PMID:11967329&amp;lt;/ref&amp;gt;. A trimeric class 1 viral glycoprotein complex (the spike complex) recognizes the cellular receptors and mediates membrane fusion upon exposure to low pH at the lysosome &amp;lt;ref name=&amp;quot;PMID:16731928&amp;quot;&amp;gt;PMID:16731928&amp;lt;/ref&amp;gt;. The spike complex is expressed as a glycoprotein precursor that is cleaved into three segments by a signal peptidase and SKI-1/S1P protease&amp;lt;ref name=&amp;quot;PMID:21612810&amp;quot;&amp;gt;PMID:21612810&amp;lt;/ref&amp;gt;. The functional spike complex consists of GP1, a membrane-anchored fusion protein (GP2), and a unique structured SSP &amp;lt;ref name=&amp;quot;PMID:23202458&amp;quot;&amp;gt;PMID:23202458&amp;lt;/ref&amp;gt;.                                                                                                                                                                                                                                                                                                                                                                                         &lt;br /&gt;
==Structural Highlights==&lt;br /&gt;
GP1 of LASV is a single chain structure with attached NAG glycans. The overall architecture of GP1 features a central β-sheet and two distinct halves: a glycosylated half containing the receptor-binding site that is made mostly by the central β-sheet and surrounding loops and a half that contains mostly helices and most likely faces the trimer axis)&amp;lt;ref name=&amp;quot;PMID: 25972533&amp;quot;&amp;gt;PMID: 25972533&amp;lt;/ref&amp;gt;. The method used to determine this structure was [http://en.wikipedia.org/wiki/X-ray_crystallography X-ray diffraction]&lt;br /&gt;
===LAMP1 Binding Site===&lt;br /&gt;
The primary cellular receptor of LASV is α-dystroglycan (α-DG)&amp;lt;ref name=&amp;quot;PMID: 9851928&amp;quot;&amp;gt;PMID: 9851928&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 15857984&amp;quot;&amp;gt;PMID: 15857984&amp;lt;/ref&amp;gt;, which is recognized by a trimeric class 1 viral GPC (spike complex) on the viral surface&amp;lt;ref name=&amp;quot;PMID: 16731928&amp;quot;&amp;gt;PMID: 16731928&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 26849049&amp;quot;&amp;gt;PMID: 26849049&amp;lt;/ref&amp;gt;. Following successful attachment to α-DG on cells, LASV is internalized via [http://en.wikipedia.org/wiki/Pinocytosis macropinocytosis]&amp;lt;ref name=&amp;quot;PMID: 27147735&amp;quot;&amp;gt;PMID: 27147735&amp;lt;/ref&amp;gt;, and the GPC facilitates membrane fusion at the acidic environment of a late endosomal compartment&amp;lt;ref name=&amp;quot;PMID: 16731928&amp;quot;&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 21931550&amp;quot;&amp;gt;PMID: 21931550 &amp;lt;/ref&amp;gt;. Recent studies have shown that successful infection by LASV requires it to switch in a pH-dependent manner from α-DG to LAMP1&amp;lt;ref name=&amp;quot;PMID: 27605678&amp;quot; /&amp;gt;&amp;lt;ref name=&amp;quot;PMID:24970085&amp;quot;&amp;gt;PMID:24970085&amp;lt;/ref&amp;gt;. Binding of the LAMP1 endosomal compartment triggers the spikes. &lt;br /&gt;
=== Histidine Triad===&lt;br /&gt;
Included in this structure is a unique triad of histidines that is highly conserved among OW arenaviruses. Located on the β-sheet face of GP1,  the histidine triad is a structural element that directly interacts with LAMP1 and helps stabilize a LAMP1-&amp;quot;compatible&amp;quot; conformation by providing a molecular mechanism for the pH-dependent receptor switching&amp;lt;ref name=&amp;quot;PMID: 25972533&amp;quot; /&amp;gt;. The histidine triad is critical in forming a binding site for LAMP1&amp;lt;ref name=&amp;quot;PMID: 28448640&amp;quot;&amp;gt;PMID: 28448640 &amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 27605678&amp;quot;&amp;gt;PMID: 27605678 &amp;lt;/ref&amp;gt;.&lt;br /&gt;
==Resources==&lt;br /&gt;
For more information on this protein structure visit the following sites: [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4zjf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4zjf OCA], [http://pdbe.org/4zjf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4zjf RCSB], [http://www.ebi.ac.uk/pdbsum/4zjf PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4zjf ProSAT]&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
== References ==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;br /&gt;
[[Category: Cohen, N]]&lt;br /&gt;
[[Category: Cohen-Dvashi, H]]&lt;br /&gt;
[[Category: Diskin, R]]&lt;br /&gt;
[[Category: Israeli, H]]&lt;br /&gt;
[[Category: Arenavirus]]&lt;br /&gt;
[[Category: Glycoprotein]]&lt;br /&gt;
[[Category: Lassa]]&lt;br /&gt;
[[Category: LASV]]&lt;br /&gt;
[[Category: Receptor binding]]&lt;br /&gt;
[[Category: Viral protein]]&lt;br /&gt;
[[Category: 4zjf]]&lt;br /&gt;
[[Category: GP1]]&lt;/div&gt;</summary>
		<author><name>Rebecca Holstein</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Elizeu/sandbox/citocromo_c&amp;diff=2757054</id>
		<title>Elizeu/sandbox/citocromo c</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Elizeu/sandbox/citocromo_c&amp;diff=2757054"/>
		<updated>2017-08-07T12:09:52Z</updated>

		<summary type="html">&lt;p&gt;Rebecca Holstein: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;Structure load=&#039;4zjf&#039; size=&#039;350&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;GP1 of Lassa Virus&#039; scene=&#039;Insert optional scene name here&#039; /&amp;gt;&lt;br /&gt;
==Importance==&lt;br /&gt;
Lassa virus (LASV), an Old World (OW) [http://en.wikipedia.org/wiki/Arenavirus arenavirus], is a notorious disease-causing agent primarily in West Africa that is able to spread from rodents to humans. This deadly pathogen causes severe viral hemorrhagic fevers and significant mortality. So far, there are no available vaccines for LASV, and only one successful vaccine against another virus found in the &#039;&#039;Arenaviridae&#039;&#039; family: Junin virus&amp;lt;ref name=&amp;quot;PMID: 9466512&amp;quot;&amp;gt;PMID: 9466512 &amp;lt;/ref&amp;gt;. Structural data at atomic resolution for viral proteins are laying the foundation for better understanding both the biology behind viral proteins and ways to combat against them. Determining the structure of the complete trimeric glycoprotein complex (GPC), composed of GP1, GP2, and SSP (stable signal peptide), will pave the path towards a future discovery of novel antiviral drugs. This is the first representative structure for OW arenaviruses. This structure reveals the overall architecture of GP1 domains from OW arenaviruses and important information relating to the mechanisms for pH switching and the binding of LASV to [[LAMP1]] (Lysosome-associated membrane glycoprotein), a recently identified host receptor that is critical for successful infection. In addition, structural analysis suggests two novel immune evasion mechanisms that LASV may utilize to escape antibody-based immune response.&lt;br /&gt;
== Function ==&lt;br /&gt;
&#039;&#039;&#039;GP1&#039;&#039;&#039; (Glycoprotein 1) is the receptor binding domain of LASV that mediates receptor recognition. Research thus far indicates that GP1 from LASV may undergo irreversible conformational changes that could serve as an immunological decoy mechanism. Arenaviruses utilize various cell surface proteins as their cellular receptors for recognizing and attaching to target cells. New World (NW) arenaviruses that belong to clades A and B use transferrin receptor 1 (TfR1)&amp;lt;ref name=&amp;quot;PMID:17287727&amp;quot;&amp;gt;PMID:17287727&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID:24920811&amp;quot;&amp;gt;PMID:24920811&amp;lt;/ref&amp;gt;, whereas OW arenaviruses, as well as clade C NW arenaviruses, use α-dystroglycan (α-DG) &amp;lt;ref name=&amp;quot;PMID:9851928&amp;quot;&amp;gt;PMID:9851928&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID:15857984&amp;quot;&amp;gt;PMID:15857984&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID:11967329&amp;quot;&amp;gt;PMID:11967329&amp;lt;/ref&amp;gt;. A trimeric class 1 viral glycoprotein complex (the spike complex) recognizes the cellular receptors and mediates membrane fusion upon exposure to low pH at the lysosome &amp;lt;ref name=&amp;quot;PMID:16731928&amp;quot;&amp;gt;PMID:16731928&amp;lt;/ref&amp;gt;. The spike complex is expressed as a glycoprotein precursor that is cleaved into three segments by a signal peptidase and SKI-1/S1P protease&amp;lt;ref name=&amp;quot;PMID:21612810&amp;quot;&amp;gt;PMID:21612810&amp;lt;/ref&amp;gt;. The functional spike complex consists of GP1, a membrane-anchored fusion protein (GP2), and a unique structured SSP &amp;lt;ref name=&amp;quot;PMID:23202458&amp;quot;&amp;gt;PMID:23202458&amp;lt;/ref&amp;gt;.                                                                                                                                                                                                                                                                                                                                                                                         &lt;br /&gt;
==Structural Highlights==&lt;br /&gt;
GP1 of LASV is a single chain structure with attached NAG glycans. The overall architecture of GP1 features a central β-sheet and two distinct halves: a glycosylated half containing the receptor-binding site that is made mostly by the central β-sheet and surrounding loops and a half that contains mostly helices and most likely faces the trimer axis)&amp;lt;ref name=&amp;quot;PMID: 25972533&amp;quot;&amp;gt;PMID: 25972533&amp;lt;/ref&amp;gt;. The method used to determine this structure was [http://en.wikipedia.org/wiki/X-ray_crystallography X-ray diffraction]&lt;br /&gt;
===LAMP1 Binding Site===&lt;br /&gt;
The primary cellular receptor of LASV is α-dystroglycan (α-DG)&amp;lt;ref name=&amp;quot;PMID: 9851928&amp;quot;&amp;gt;PMID: 9851928&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 15857984&amp;quot;&amp;gt;PMID: 15857984&amp;lt;/ref&amp;gt;, which is recognized by a trimeric class 1 viral GPC (spike complex) on the viral surface&amp;lt;ref name=&amp;quot;PMID: 16731928&amp;quot;&amp;gt;PMID: 16731928&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 26849049&amp;quot;&amp;gt;PMID: 26849049&amp;lt;/ref&amp;gt;. Following successful attachment to α-DG on cells, LASV is internalized via [http://en.wikipedia.org/wiki/Pinocytosis macropinocytosis]&amp;lt;ref name=&amp;quot;PMID: 27147735&amp;quot;&amp;gt;PMID: 27147735&amp;lt;/ref&amp;gt;, and the GPC facilitates membrane fusion at the acidic environment of a late endosomal compartment&amp;lt;ref name=&amp;quot;PMID: 16731928&amp;quot;&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 21931550&amp;quot;&amp;gt;PMID: 21931550 &amp;lt;/ref&amp;gt;. Recent studies have shown that successful infection by LASV requires it to switch in a pH-dependent manner from α-DG to LAMP1&amp;lt;ref name=&amp;quot;PMID: 27605678&amp;quot; /&amp;gt;&amp;lt;ref name=&amp;quot;PMID:24970085&amp;quot;&amp;gt;PMID:24970085&amp;lt;/ref&amp;gt;. Binding of the LAMP1 endosomal compartment triggers the spikes. &lt;br /&gt;
=== Histidine Triad===&lt;br /&gt;
Included in this structure is a unique triad of histidines that is highly conserved among OW arenaviruses. Located on the β-sheet face of GP1,  the histidine triad is a structural element that directly interacts with LAMP1 and helps stabilize a LAMP1-&amp;quot;compatible&amp;quot; conformation by providing a molecular mechanism for the pH-dependent receptor switching&amp;lt;ref name=&amp;quot;PMID: 25972533&amp;quot; /&amp;gt;. The histidine triad is critical in forming a binding site for LAMP1&amp;lt;ref name=&amp;quot;PMID: 28448640&amp;quot;&amp;gt;PMID: 28448640 &amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 27605678&amp;quot;&amp;gt;PMID: 27605678 &amp;lt;/ref&amp;gt;.&lt;br /&gt;
==Resources==&lt;br /&gt;
For more information on this protein structure visit the following sites: [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4zjf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4zjf OCA], [http://pdbe.org/4zjf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4zjf RCSB], [http://www.ebi.ac.uk/pdbsum/4zjf PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4zjf ProSAT]&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
== References ==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;br /&gt;
[[Category: Cohen, N]]&lt;br /&gt;
[[Category: Cohen-Dvashi, H]]&lt;br /&gt;
[[Category: Diskin, R]]&lt;br /&gt;
[[Category: Israeli, H]]&lt;br /&gt;
[[Category: Arenavirus]]&lt;br /&gt;
[[Category: Glycoprotein]]&lt;br /&gt;
[[Category: Lassa]]&lt;br /&gt;
[[Category: LASV]]&lt;br /&gt;
[[Category: Receptor binding]]&lt;br /&gt;
[[Category: Viral protein]]&lt;br /&gt;
[[Category: 4zjf]]&lt;br /&gt;
[[Category: GP1]]&lt;/div&gt;</summary>
		<author><name>Rebecca Holstein</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Elizeu/sandbox/citocromo_c&amp;diff=2757053</id>
		<title>Elizeu/sandbox/citocromo c</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Elizeu/sandbox/citocromo_c&amp;diff=2757053"/>
		<updated>2017-08-07T12:08:30Z</updated>

		<summary type="html">&lt;p&gt;Rebecca Holstein: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;==Importance==&lt;br /&gt;
Lassa virus (LASV), an Old World (OW) [http://en.wikipedia.org/wiki/Arenavirus arenavirus], is a notorious disease-causing agent primarily in West Africa that is able to spread from rodents to humans. This deadly pathogen causes severe viral hemorrhagic fevers and significant mortality. So far, there are no available vaccines for LASV, and only one successful vaccine against another virus found in the &#039;&#039;Arenaviridae&#039;&#039; family: Junin virus&amp;lt;ref name=&amp;quot;PMID: 9466512&amp;quot;&amp;gt;PMID: 9466512 &amp;lt;/ref&amp;gt;. Structural data at atomic resolution for viral proteins are laying the foundation for better understanding both the biology behind viral proteins and ways to combat against them. Determining the structure of the complete trimeric glycoprotein complex (GPC), composed of GP1, GP2, and SSP (stable signal peptide), will pave the path towards a future discovery of novel antiviral drugs. This is the first representative structure for OW arenaviruses. This structure reveals the overall architecture of GP1 domains from OW arenaviruses and important information relating to the mechanisms for pH switching and the binding of LASV to [[LAMP1]] (Lysosome-associated membrane glycoprotein), a recently identified host receptor that is critical for successful infection. In addition, structural analysis suggests two novel immune evasion mechanisms that LASV may utilize to escape antibody-based immune response.&lt;br /&gt;
== Function ==&lt;br /&gt;
&#039;&#039;&#039;GP1&#039;&#039;&#039; (Glycoprotein 1) is the receptor binding domain of LASV that mediates receptor recognition. Research thus far indicates that GP1 from LASV may undergo irreversible conformational changes that could serve as an immunological decoy mechanism. Arenaviruses utilize various cell surface proteins as their cellular receptors for recognizing and attaching to target cells. New World (NW) arenaviruses that belong to clades A and B use transferrin receptor 1 (TfR1)&amp;lt;ref name=&amp;quot;PMID:17287727&amp;quot;&amp;gt;PMID:17287727&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID:24920811&amp;quot;&amp;gt;PMID:24920811&amp;lt;/ref&amp;gt;, whereas OW arenaviruses, as well as clade C NW arenaviruses, use α-dystroglycan (α-DG) &amp;lt;ref name=&amp;quot;PMID:9851928&amp;quot;&amp;gt;PMID:9851928&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID:15857984&amp;quot;&amp;gt;PMID:15857984&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID:11967329&amp;quot;&amp;gt;PMID:11967329&amp;lt;/ref&amp;gt;. A trimeric class 1 viral glycoprotein complex (the spike complex) recognizes the cellular receptors and mediates membrane fusion upon exposure to low pH at the lysosome &amp;lt;ref name=&amp;quot;PMID:16731928&amp;quot;&amp;gt;PMID:16731928&amp;lt;/ref&amp;gt;. The spike complex is expressed as a glycoprotein precursor that is cleaved into three segments by a signal peptidase and SKI-1/S1P protease&amp;lt;ref name=&amp;quot;PMID:21612810&amp;quot;&amp;gt;PMID:21612810&amp;lt;/ref&amp;gt;. The functional spike complex consists of GP1, a membrane-anchored fusion protein (GP2), and a unique structured SSP &amp;lt;ref name=&amp;quot;PMID:23202458&amp;quot;&amp;gt;PMID:23202458&amp;lt;/ref&amp;gt;.                                                                                                                                                                                                                                                                                                                                                                                         &lt;br /&gt;
==Structural Highlights==&lt;br /&gt;
GP1 of LASV is a single chain structure with attached NAG glycans. The overall architecture of GP1 features a central β-sheet and two distinct halves: a glycosylated half containing the receptor-binding site that is made mostly by the central β-sheet and surrounding loops and a half that contains mostly helices and most likely faces the trimer axis)&amp;lt;ref name=&amp;quot;PMID: 25972533&amp;quot;&amp;gt;PMID: 25972533&amp;lt;/ref&amp;gt;. The method used to determine this structure was [http://en.wikipedia.org/wiki/X-ray_crystallography X-ray diffraction]&lt;br /&gt;
===LAMP1 Binding Site===&lt;br /&gt;
The primary cellular receptor of LASV is α-dystroglycan (α-DG)&amp;lt;ref name=&amp;quot;PMID: 9851928&amp;quot;&amp;gt;PMID: 9851928&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 15857984&amp;quot;&amp;gt;PMID: 15857984&amp;lt;/ref&amp;gt;, which is recognized by a trimeric class 1 viral GPC (spike complex) on the viral surface&amp;lt;ref name=&amp;quot;PMID: 16731928&amp;quot;&amp;gt;PMID: 16731928&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 26849049&amp;quot;&amp;gt;PMID: 26849049&amp;lt;/ref&amp;gt;. Following successful attachment to α-DG on cells, LASV is internalized via [http://en.wikipedia.org/wiki/Pinocytosis macropinocytosis]&amp;lt;ref name=&amp;quot;PMID: 27147735&amp;quot;&amp;gt;PMID: 27147735&amp;lt;/ref&amp;gt;, and the GPC facilitates membrane fusion at the acidic environment of a late endosomal compartment&amp;lt;ref name=&amp;quot;PMID: 16731928&amp;quot;&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 21931550&amp;quot;&amp;gt;PMID: 21931550 &amp;lt;/ref&amp;gt;. Recent studies have shown that successful infection by LASV requires it to switch in a pH-dependent manner from α-DG to LAMP1&amp;lt;ref name=&amp;quot;PMID: 27605678&amp;quot; /&amp;gt;&amp;lt;ref name=&amp;quot;PMID:24970085&amp;quot;&amp;gt;PMID:24970085&amp;lt;/ref&amp;gt;. Binding of the LAMP1 endosomal compartment triggers the spikes. &lt;br /&gt;
=== Histidine Triad===&lt;br /&gt;
Included in this structure is a unique triad of histidines that is highly conserved among OW arenaviruses. Located on the β-sheet face of GP1,  the histidine triad is a structural element that directly interacts with LAMP1 and helps stabilize a LAMP1-&amp;quot;compatible&amp;quot; conformation by providing a molecular mechanism for the pH-dependent receptor switching&amp;lt;ref name=&amp;quot;PMID: 25972533&amp;quot; /&amp;gt;. The histidine triad is critical in forming a binding site for LAMP1&amp;lt;ref name=&amp;quot;PMID: 28448640&amp;quot;&amp;gt;PMID: 28448640 &amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 27605678&amp;quot;&amp;gt;PMID: 27605678 &amp;lt;/ref&amp;gt;.&lt;br /&gt;
==Resources==&lt;br /&gt;
For more information on this protein structure visit the following sites: [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4zjf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4zjf OCA], [http://pdbe.org/4zjf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4zjf RCSB], [http://www.ebi.ac.uk/pdbsum/4zjf PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4zjf ProSAT]&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
== References ==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;br /&gt;
[[Category: Cohen, N]]&lt;br /&gt;
[[Category: Cohen-Dvashi, H]]&lt;br /&gt;
[[Category: Diskin, R]]&lt;br /&gt;
[[Category: Israeli, H]]&lt;br /&gt;
[[Category: Arenavirus]]&lt;br /&gt;
[[Category: Glycoprotein]]&lt;br /&gt;
[[Category: Lassa]]&lt;br /&gt;
[[Category: LASV]]&lt;br /&gt;
[[Category: Receptor binding]]&lt;br /&gt;
[[Category: Viral protein]]&lt;br /&gt;
[[Category: 4zjf]]&lt;br /&gt;
[[Category: GP1]]&lt;/div&gt;</summary>
		<author><name>Rebecca Holstein</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Elizeu/sandbox/citocromo_c&amp;diff=2757052</id>
		<title>Elizeu/sandbox/citocromo c</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Elizeu/sandbox/citocromo_c&amp;diff=2757052"/>
		<updated>2017-08-07T12:06:43Z</updated>

		<summary type="html">&lt;p&gt;Rebecca Holstein: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;Structure load=&#039;4zjf&#039; size=&#039;350&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;GP1 of Lassa Virus&#039; scene=&#039;Insert optional scene name here&#039; /&amp;gt;&lt;br /&gt;
==Importance==&lt;br /&gt;
Lassa virus (LASV), an Old World (OW) [http://en.wikipedia.org/wiki/Arenavirus arenavirus], is a notorious disease-causing agent primarily in West Africa that is able to spread from rodents to humans. This deadly pathogen causes severe viral hemorrhagic fevers and significant mortality. So far, there are no available vaccines for LASV, and only one successful vaccine against another virus found in the &#039;&#039;Arenaviridae&#039;&#039; family: Junin virus&amp;lt;ref name=&amp;quot;PMID: 9466512&amp;quot;&amp;gt;PMID: 9466512 &amp;lt;/ref&amp;gt;. Structural data at atomic resolution for viral proteins are laying the foundation for better understanding both the biology behind viral proteins and ways to combat against them. Determining the structure of the complete trimeric glycoprotein complex (GPC), composed of GP1, GP2, and SSP (stable signal peptide), will pave the path towards a future discovery of novel antiviral drugs. This is the first representative structure for OW arenaviruses. This structure reveals the overall architecture of GP1 domains from OW arenaviruses and important information relating to the mechanisms for pH switching and the binding of LASV to [[LAMP1]] (Lysosome-associated membrane glycoprotein), a recently identified host receptor that is critical for successful infection. In addition, structural analysis suggests two novel immune evasion mechanisms that LASV may utilize to escape antibody-based immune response.&lt;br /&gt;
== Function ==&lt;br /&gt;
&#039;&#039;&#039;GP1&#039;&#039;&#039; (Glycoprotein 1) is the receptor binding domain of LASV that mediates receptor recognition. Research thus far indicates that GP1 from LASV may undergo irreversible conformational changes that could serve as an immunological decoy mechanism. Arenaviruses utilize various cell surface proteins as their cellular receptors for recognizing and attaching to target cells. New World (NW) arenaviruses that belong to clades A and B use transferrin receptor 1 (TfR1)&amp;lt;ref name=&amp;quot;PMID:17287727&amp;quot;&amp;gt;PMID:17287727&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID:24920811&amp;quot;&amp;gt;PMID:24920811&amp;lt;/ref&amp;gt;, whereas OW arenaviruses, as well as clade C NW arenaviruses, use α-dystroglycan (α-DG) &amp;lt;ref name=&amp;quot;PMID:9851928&amp;quot;&amp;gt;PMID:9851928&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID:15857984&amp;quot;&amp;gt;PMID:15857984&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID:11967329&amp;quot;&amp;gt;PMID:11967329&amp;lt;/ref&amp;gt;. A trimeric class 1 viral glycoprotein complex (the spike complex) recognizes the cellular receptors and mediates membrane fusion upon exposure to low pH at the lysosome &amp;lt;ref name=&amp;quot;PMID:16731928&amp;quot;&amp;gt;PMID:16731928&amp;lt;/ref&amp;gt;. The spike complex is expressed as a glycoprotein precursor that is cleaved into three segments by a signal peptidase and SKI-1/S1P protease&amp;lt;ref name=&amp;quot;PMID:21612810&amp;quot;&amp;gt;PMID:21612810&amp;lt;/ref&amp;gt;. The functional spike complex consists of GP1, a membrane-anchored fusion protein (GP2), and a unique structured SSP &amp;lt;ref name=&amp;quot;PMID:23202458&amp;quot;&amp;gt;PMID:23202458&amp;lt;/ref&amp;gt;.                                                                                                                                                                                                                                                                                                                                                                                         &lt;br /&gt;
==Structural Highlights==&lt;br /&gt;
GP1 of LASV is a single chain structure with attached NAG glycans. The overall architecture of GP1 features a central β-sheet and two distinct halves: a glycosylated half containing the receptor-binding site that is made mostly by the central β-sheet and surrounding loops and a half that contains mostly helices and most likely faces the trimer axis)&amp;lt;ref name=&amp;quot;PMID: 25972533&amp;quot;&amp;gt;PMID: 25972533&amp;lt;/ref&amp;gt;. The method used to determine this structure was [http://en.wikipedia.org/wiki/X-ray_crystallography X-ray diffraction]&lt;br /&gt;
===LAMP1 Binding Site===&lt;br /&gt;
The primary cellular receptor of LASV is α-dystroglycan (α-DG)&amp;lt;ref name=&amp;quot;PMID: 9851928&amp;quot;&amp;gt;PMID: 9851928&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 15857984&amp;quot;&amp;gt;PMID: 15857984&amp;lt;/ref&amp;gt;, which is recognized by a trimeric class 1 viral GPC (spike complex) on the viral surface&amp;lt;ref name=&amp;quot;PMID: 16731928&amp;quot;&amp;gt;PMID: 16731928&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 26849049&amp;quot;&amp;gt;PMID: 26849049&amp;lt;/ref&amp;gt;. Following successful attachment to α-DG on cells, LASV is internalized via [http://en.wikipedia.org/wiki/Pinocytosis macropinocytosis]&amp;lt;ref name=&amp;quot;PMID: 27147735&amp;quot;&amp;gt;PMID: 27147735&amp;lt;/ref&amp;gt;, and the GPC facilitates membrane fusion at the acidic environment of a late endosomal compartment&amp;lt;ref name=&amp;quot;PMID: 16731928&amp;quot;&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 21931550&amp;quot;&amp;gt;PMID: 21931550 &amp;lt;/ref&amp;gt;. Recent studies have shown that successful infection by LASV requires it to switch in a pH-dependent manner from α-DG to LAMP1&amp;lt;ref name=&amp;quot;PMID: 27605678&amp;quot; /&amp;gt;&amp;lt;ref name=&amp;quot;PMID:24970085&amp;quot;&amp;gt;PMID:24970085&amp;lt;/ref&amp;gt;. Binding of the LAMP1 endosomal compartment triggers the spikes. &lt;br /&gt;
=== Histidine Triad===&lt;br /&gt;
Included in this structure is a unique triad of histidines that is highly conserved among OW arenaviruses. Located on the β-sheet face of GP1,  the histidine triad is a structural element that directly interacts with LAMP1 and helps stabilize a LAMP1-&amp;quot;compatible&amp;quot; conformation by providing a molecular mechanism for the pH-dependent receptor switching&amp;lt;ref name=&amp;quot;PMID: 25972533&amp;quot; /&amp;gt;. The histidine triad is critical in forming a binding site for LAMP1&amp;lt;ref name=&amp;quot;PMID: 28448640&amp;quot;&amp;gt;PMID: 28448640 &amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 27605678&amp;quot;&amp;gt;PMID: 27605678 &amp;lt;/ref&amp;gt;.&lt;br /&gt;
==Resources==&lt;br /&gt;
For more information on this protein structure visit the following sites: [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4zjf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4zjf OCA], [http://pdbe.org/4zjf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4zjf RCSB], [http://www.ebi.ac.uk/pdbsum/4zjf PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4zjf ProSAT]&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
== References ==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;br /&gt;
[[Category: Cohen, N]]&lt;br /&gt;
[[Category: Cohen-Dvashi, H]]&lt;br /&gt;
[[Category: Diskin, R]]&lt;br /&gt;
[[Category: Israeli, H]]&lt;br /&gt;
[[Category: Arenavirus]]&lt;br /&gt;
[[Category: Glycoprotein]]&lt;br /&gt;
[[Category: Lassa]]&lt;br /&gt;
[[Category: LASV]]&lt;br /&gt;
[[Category: Receptor binding]]&lt;br /&gt;
[[Category: Viral protein]]&lt;br /&gt;
[[Category: 4zjf]]&lt;br /&gt;
[[Category: GP1]]&lt;/div&gt;</summary>
		<author><name>Rebecca Holstein</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Elizeu/sandbox/citocromo_c&amp;diff=2757051</id>
		<title>Elizeu/sandbox/citocromo c</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Elizeu/sandbox/citocromo_c&amp;diff=2757051"/>
		<updated>2017-08-07T12:04:34Z</updated>

		<summary type="html">&lt;p&gt;Rebecca Holstein: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;==Importance==&lt;br /&gt;
Lassa virus (LASV), an Old World (OW) [http://en.wikipedia.org/wiki/Arenavirus arenavirus], is a notorious disease-causing agent primarily in West Africa that is able to spread from rodents to humans. This deadly pathogen causes severe viral hemorrhagic fevers and significant mortality. So far, there are no available vaccines for LASV, and only one successful vaccine against another virus found in the &#039;&#039;Arenaviridae&#039;&#039; family: Junin virus&amp;lt;ref name=&amp;quot;PMID: 9466512&amp;quot;&amp;gt;PMID: 9466512 &amp;lt;/ref&amp;gt;. Structural data at atomic resolution for viral proteins are laying the foundation for better understanding both the biology behind viral proteins and ways to combat against them. Determining the structure of the complete trimeric glycoprotein complex (GPC), composed of GP1, GP2, and SSP (stable signal peptide), will pave the path towards a future discovery of novel antiviral drugs. This is the first representative structure for OW arenaviruses. This structure reveals the overall architecture of GP1 domains from OW arenaviruses and important information relating to the mechanisms for pH switching and the binding of LASV to [[LAMP1]] (Lysosome-associated membrane glycoprotein), a recently identified host receptor that is critical for successful infection. In addition, structural analysis suggests two novel immune evasion mechanisms that LASV may utilize to escape antibody-based immune response.&lt;br /&gt;
== Function ==&lt;br /&gt;
&#039;&#039;&#039;GP1&#039;&#039;&#039; (Glycoprotein 1) is the receptor binding domain of LASV that mediates receptor recognition. Research thus far indicates that GP1 from LASV may undergo irreversible conformational changes that could serve as an immunological decoy mechanism. Arenaviruses utilize various cell surface proteins as their cellular receptors for recognizing and attaching to target cells. New World (NW) arenaviruses that belong to clades A and B use transferrin receptor 1 (TfR1)&amp;lt;ref name=&amp;quot;PMID:17287727&amp;quot;&amp;gt;PMID:17287727&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID:24920811&amp;quot;&amp;gt;PMID:24920811&amp;lt;/ref&amp;gt;, whereas OW arenaviruses, as well as clade C NW arenaviruses, use α-dystroglycan (α-DG) &amp;lt;ref name=&amp;quot;PMID:9851928&amp;quot;&amp;gt;PMID:9851928&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID:15857984&amp;quot;&amp;gt;PMID:15857984&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID:11967329&amp;quot;&amp;gt;PMID:11967329&amp;lt;/ref&amp;gt;. A trimeric class 1 viral glycoprotein complex (the spike complex) recognizes the cellular receptors and mediates membrane fusion upon exposure to low pH at the lysosome &amp;lt;ref name=&amp;quot;PMID:16731928&amp;quot;&amp;gt;PMID:16731928&amp;lt;/ref&amp;gt;. The spike complex is expressed as a glycoprotein precursor that is cleaved into three segments by a signal peptidase and SKI-1/S1P protease&amp;lt;ref name=&amp;quot;PMID:21612810&amp;quot;&amp;gt;PMID:21612810&amp;lt;/ref&amp;gt;. The functional spike complex consists of GP1, a membrane-anchored fusion protein (GP2), and a unique structured SSP &amp;lt;ref name=&amp;quot;PMID:23202458&amp;quot;&amp;gt;PMID:23202458&amp;lt;/ref&amp;gt;.                                                                                                                                                                                                                                                                                                                                                                                         &lt;br /&gt;
==Structural Highlights==&lt;br /&gt;
GP1 of LASV is a single chain structure with attached NAG glycans. The overall architecture of GP1 features a central β-sheet and two distinct halves: a glycosylated half containing the receptor-binding site that is made mostly by the central β-sheet and surrounding loops and a half that contains mostly helices and most likely faces the trimer axis)&amp;lt;ref name=&amp;quot;PMID: 25972533&amp;quot;&amp;gt;PMID: 25972533&amp;lt;/ref&amp;gt;. The method used to determine this structure was [http://en.wikipedia.org/wiki/X-ray_crystallography X-ray diffraction]&lt;br /&gt;
===LAMP1 Binding Site===&lt;br /&gt;
The primary cellular receptor of LASV is α-dystroglycan (α-DG)&amp;lt;ref name=&amp;quot;PMID: 9851928&amp;quot;&amp;gt;PMID: 9851928&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 15857984&amp;quot;&amp;gt;PMID: 15857984&amp;lt;/ref&amp;gt;, which is recognized by a trimeric class 1 viral GPC (spike complex) on the viral surface&amp;lt;ref name=&amp;quot;PMID: 16731928&amp;quot;&amp;gt;PMID: 16731928&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 26849049&amp;quot;&amp;gt;PMID: 26849049&amp;lt;/ref&amp;gt;. Following successful attachment to α-DG on cells, LASV is internalized via [http://en.wikipedia.org/wiki/Pinocytosis macropinocytosis]&amp;lt;ref name=&amp;quot;PMID: 27147735&amp;quot;&amp;gt;PMID: 27147735&amp;lt;/ref&amp;gt;, and the GPC facilitates membrane fusion at the acidic environment of a late endosomal compartment&amp;lt;ref name=&amp;quot;PMID: 16731928&amp;quot;&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 21931550&amp;quot;&amp;gt;PMID: 21931550 &amp;lt;/ref&amp;gt;. Recent studies have shown that successful infection by LASV requires it to switch in a pH-dependent manner from α-DG to LAMP1&amp;lt;ref name=&amp;quot;PMID: 27605678&amp;quot; /&amp;gt;&amp;lt;ref name=&amp;quot;PMID:24970085&amp;quot;&amp;gt;PMID:24970085&amp;lt;/ref&amp;gt;. Binding of the LAMP1 endosomal compartment triggers the spikes. &lt;br /&gt;
=== Histidine Triad===&lt;br /&gt;
Included in this structure is a unique triad of histidines that is highly conserved among OW arenaviruses. Located on the β-sheet face of GP1,  the histidine triad is a structural element that directly interacts with LAMP1 and helps stabilize a LAMP1-&amp;quot;compatible&amp;quot; conformation by providing a molecular mechanism for the pH-dependent receptor switching&amp;lt;ref name=&amp;quot;PMID: 25972533&amp;quot; /&amp;gt;. The histidine triad is critical in forming a binding site for LAMP1&amp;lt;ref name=&amp;quot;PMID: 28448640&amp;quot;&amp;gt;PMID: 28448640 &amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 27605678&amp;quot;&amp;gt;PMID: 27605678 &amp;lt;/ref&amp;gt;.&lt;br /&gt;
==Resources==&lt;br /&gt;
For more information on this protein structure visit the following sites: [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4zjf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4zjf OCA], [http://pdbe.org/4zjf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4zjf RCSB], [http://www.ebi.ac.uk/pdbsum/4zjf PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4zjf ProSAT]&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
== References ==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;br /&gt;
[[Category: Cohen, N]]&lt;br /&gt;
[[Category: Cohen-Dvashi, H]]&lt;br /&gt;
[[Category: Diskin, R]]&lt;br /&gt;
[[Category: Israeli, H]]&lt;br /&gt;
[[Category: Arenavirus]]&lt;br /&gt;
[[Category: Glycoprotein]]&lt;br /&gt;
[[Category: Lassa]]&lt;br /&gt;
[[Category: LASV]]&lt;br /&gt;
[[Category: Receptor binding]]&lt;br /&gt;
[[Category: Viral protein]]&lt;br /&gt;
[[Category: 4zjf]]&lt;br /&gt;
[[Category: GP1]]&lt;/div&gt;</summary>
		<author><name>Rebecca Holstein</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Elizeu/sandbox/citocromo_c&amp;diff=2757050</id>
		<title>Elizeu/sandbox/citocromo c</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Elizeu/sandbox/citocromo_c&amp;diff=2757050"/>
		<updated>2017-08-07T10:11:25Z</updated>

		<summary type="html">&lt;p&gt;Rebecca Holstein: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;Structure load=&#039;4zjf&#039; size=&#039;350&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;GP1 of Lassa Virus&#039; scene=&#039;Insert optional scene name here&#039; /&amp;gt;&lt;br /&gt;
==Importance==&lt;br /&gt;
Lassa virus (LASV), an Old World (OW) [http://en.wikipedia.org/wiki/Arenavirus arenavirus], is a notorious disease-causing agent primarily in West Africa that is able to spread from rodents to humans. This deadly pathogen causes severe viral hemorrhagic fevers and significant mortality. So far, there are no available vaccines for LASV, and only one successful vaccine against another virus found in the &#039;&#039;Arenaviridae&#039;&#039; family: Junin virus&amp;lt;ref name=&amp;quot;PMID: 9466512&amp;quot;&amp;gt;PMID: 9466512 &amp;lt;/ref&amp;gt;. Structural data at atomic resolution for viral proteins are laying the foundation for better understanding both the biology behind viral proteins and ways to combat against them. Determining the structure of the complete trimeric glycoprotein complex (GPC), composed of GP1, GP2, and SSP (stable signal peptide), will pave the path towards a future discovery of novel antiviral drugs. This is the first representative structure for OW arenaviruses. This structure reveals the overall architecture of GP1 domains from OW arenaviruses and important information relating to the mechanisms for pH switching and the binding of LASV to [[LAMP1]] (Lysosome-associated membrane glycoprotein), a recently identified host receptor that is critical for successful infection. In addition, structural analysis suggests two novel immune evasion mechanisms that LASV may utilize to escape antibody-based immune response.&lt;br /&gt;
== Function ==&lt;br /&gt;
&#039;&#039;&#039;GP1&#039;&#039;&#039; (Glycoprotein 1) is the receptor binding domain of LASV that mediates receptor recognition. Research thus far indicates that GP1 from LASV may undergo irreversible conformational changes that could serve as an immunological decoy mechanism. Arenaviruses utilize various cell surface proteins as their cellular receptors for recognizing and attaching to target cells. New World (NW) arenaviruses that belong to clades A and B use transferrin receptor 1 (TfR1)&amp;lt;ref name=&amp;quot;PMID:17287727&amp;quot;&amp;gt;PMID:17287727&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID:24920811&amp;quot;&amp;gt;PMID:24920811&amp;lt;/ref&amp;gt;, whereas OW arenaviruses, as well as clade C NW arenaviruses, use α-dystroglycan (α-DG) &amp;lt;ref name=&amp;quot;PMID:9851928&amp;quot;&amp;gt;PMID:9851928&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID:15857984&amp;quot;&amp;gt;PMID:15857984&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID:11967329&amp;quot;&amp;gt;PMID:11967329&amp;lt;/ref&amp;gt;. A trimeric class 1 viral glycoprotein complex (the spike complex) recognizes the cellular receptors and mediates membrane fusion upon exposure to low pH at the lysosome &amp;lt;ref name=&amp;quot;PMID:16731928&amp;quot;&amp;gt;PMID:16731928&amp;lt;/ref&amp;gt;. The spike complex is expressed as a glycoprotein precursor that is cleaved into three segments by a signal peptidase and SKI-1/S1P protease&amp;lt;ref name=&amp;quot;PMID:21612810&amp;quot;&amp;gt;PMID:21612810&amp;lt;/ref&amp;gt;. The functional spike complex consists of GP1, a membrane-anchored fusion protein (GP2), and a unique structured SSP &amp;lt;ref name=&amp;quot;PMID:23202458&amp;quot;&amp;gt;PMID:23202458&amp;lt;/ref&amp;gt;.                                                                                                                                                                                                                                                                                                                                                                                         &lt;br /&gt;
==Structural Highlights==&lt;br /&gt;
GP1 of LASV is a single chain structure with attached NAG glycans. The overall architecture of GP1 features a central β-sheet and two distinct halves: a glycosylated half containing the receptor-binding site that is made mostly by the central β-sheet and surrounding loops and a half that contains mostly helices and most likely faces the trimer axis)&amp;lt;ref name=&amp;quot;PMID: 25972533&amp;quot;&amp;gt;PMID: 25972533&amp;lt;/ref&amp;gt;. The method used to determine this structure was [http://en.wikipedia.org/wiki/X-ray_crystallography X-ray diffraction]&lt;br /&gt;
===LAMP1 Binding Site===&lt;br /&gt;
The primary cellular receptor of LASV is α-dystroglycan (α-DG)&amp;lt;ref name=&amp;quot;PMID: 9851928&amp;quot;&amp;gt;PMID: 9851928&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 15857984&amp;quot;&amp;gt;PMID: 15857984&amp;lt;/ref&amp;gt;, which is recognized by a trimeric class 1 viral GPC (spike complex) on the viral surface&amp;lt;ref name=&amp;quot;PMID: 16731928&amp;quot;&amp;gt;PMID: 16731928&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 26849049&amp;quot;&amp;gt;PMID: 26849049&amp;lt;/ref&amp;gt;. Following successful attachment to α-DG on cells, LASV is internalized via [http://en.wikipedia.org/wiki/Pinocytosis macropinocytosis]&amp;lt;ref name=&amp;quot;PMID: 27147735&amp;quot;&amp;gt;PMID: 27147735&amp;lt;/ref&amp;gt;, and the GPC facilitates membrane fusion at the acidic environment of a late endosomal compartment&amp;lt;ref name=&amp;quot;PMID: 16731928&amp;quot;&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 21931550&amp;quot;&amp;gt;PMID: 21931550 &amp;lt;/ref&amp;gt;. Recent studies have shown that successful infection by LASV requires it to switch in a pH-dependent manner from α-DG to LAMP1&amp;lt;ref name=&amp;quot;PMID: 27605678&amp;quot; /&amp;gt;&amp;lt;ref name=&amp;quot;PMID:24970085&amp;quot;&amp;gt;PMID:24970085&amp;lt;/ref&amp;gt;. Binding of the LAMP1 endosomal compartment triggers the spikes. &lt;br /&gt;
=== Histidine Triad===&lt;br /&gt;
Included in this structure is a unique triad of histidines that is highly conserved among OW arenaviruses. Located on the β-sheet face of GP1,  the &amp;lt;scene name=&#039;55/559112/Histriad/1&#039;&amp;gt;histidine triad&amp;lt;/scene&amp;gt; is a structural element that directly interacts with LAMP1 and helps stabilize a LAMP1-&amp;quot;compatible&amp;quot; conformation by providing a molecular mechanism for the pH-dependent receptor switching&amp;lt;ref name=&amp;quot;PMID: 25972533&amp;quot; /&amp;gt;. The histidine triad is critical in forming a binding site for LAMP1&amp;lt;ref name=&amp;quot;PMID: 28448640&amp;quot;&amp;gt;PMID: 28448640 &amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 27605678&amp;quot;&amp;gt;PMID: 27605678 &amp;lt;/ref&amp;gt;.&lt;br /&gt;
==Resources==&lt;br /&gt;
For more information on this protein structure visit the following sites: [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4zjf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4zjf OCA], [http://pdbe.org/4zjf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4zjf RCSB], [http://www.ebi.ac.uk/pdbsum/4zjf PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4zjf ProSAT]&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
== References ==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;br /&gt;
[[Category: Cohen, N]]&lt;br /&gt;
[[Category: Cohen-Dvashi, H]]&lt;br /&gt;
[[Category: Diskin, R]]&lt;br /&gt;
[[Category: Israeli, H]]&lt;br /&gt;
[[Category: Arenavirus]]&lt;br /&gt;
[[Category: Glycoprotein]]&lt;br /&gt;
[[Category: Lassa]]&lt;br /&gt;
[[Category: LASV]]&lt;br /&gt;
[[Category: Receptor binding]]&lt;br /&gt;
[[Category: Viral protein]]&lt;br /&gt;
[[Category: 4zjf]]&lt;br /&gt;
[[Category: GP1]]&lt;/div&gt;</summary>
		<author><name>Rebecca Holstein</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Elizeu/sandbox/citocromo_c&amp;diff=2757049</id>
		<title>Elizeu/sandbox/citocromo c</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Elizeu/sandbox/citocromo_c&amp;diff=2757049"/>
		<updated>2017-08-07T10:05:49Z</updated>

		<summary type="html">&lt;p&gt;Rebecca Holstein: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;Structure load=&#039;4zjf&#039; size=&#039;350&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;GP1 of Lassa Virus&#039; scene=&#039;Insert optional scene name here&#039; /&amp;gt;&lt;br /&gt;
==Importance==&lt;br /&gt;
Lassa virus (LASV), an Old World (OW) [http://en.wikipedia.org/wiki/Arenavirus arenavirus], is a notorious disease-causing agent primarily in West Africa that is able to spread from rodents to humans. This deadly pathogen causes severe viral hemorrhagic fevers and significant mortality. So far, there are no available vaccines for LASV, and only one successful vaccine against another virus found in the &#039;&#039;Arenaviridae&#039;&#039; family: Junin virus&amp;lt;ref name=&amp;quot;PMID: 9466512&amp;quot;&amp;gt;PMID: 9466512 &amp;lt;/ref&amp;gt;. Structural data at atomic resolution for viral proteins are laying the foundation for better understanding both the biology behind viral proteins and ways to combat against them. Determining the structure of the complete trimeric glycoprotein complex (GPC), composed of GP1, GP2, and SSP (stable signal peptide), will pave the path towards a future discovery of novel antiviral drugs. This is the first representative structure for OW arenaviruses. This structure reveals the overall architecture of GP1 domains from OW arenaviruses and important information relating to the mechanisms for pH switching and the binding of LASV to [[LAMP1]] (Lysosome-associated membrane glycoprotein), a recently identified host receptor that is critical for successful infection. In addition, structural analysis suggests two novel immune evasion mechanisms that LASV may utilize to escape antibody-based immune response.&lt;br /&gt;
== Function ==&lt;br /&gt;
&#039;&#039;&#039;GP1&#039;&#039;&#039; (Glycoprotein 1) is the receptor binding domain of LASV that mediates receptor recognition. Research thus far indicates that GP1 from LASV may undergo irreversible conformational changes that could serve as an immunological decoy mechanism. Arenaviruses utilize various cell surface proteins as their cellular receptors for recognizing and attaching to target cells. New World (NW) arenaviruses that belong to clades A and B use transferrin receptor 1 (TfR1)&amp;lt;ref name=&amp;quot;PMID:17287727&amp;quot;&amp;gt;PMID:17287727&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID:24920811&amp;quot;&amp;gt;PMID:24920811&amp;lt;/ref&amp;gt;, whereas OW arenaviruses, as well as clade C NW arenaviruses, use α-dystroglycan (α-DG) &amp;lt;ref name=&amp;quot;PMID:9851928&amp;quot;&amp;gt;PMID:9851928&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID:15857984&amp;quot;&amp;gt;PMID:15857984&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID:11967329&amp;quot;&amp;gt;PMID:11967329&amp;lt;/ref&amp;gt;. A trimeric class 1 viral glycoprotein complex (the spike complex) recognizes the cellular receptors and mediates membrane fusion upon exposure to low pH at the lysosome &amp;lt;ref name=&amp;quot;PMID:16731928&amp;quot;&amp;gt;PMID:16731928&amp;lt;/ref&amp;gt;. The spike complex is expressed as a glycoprotein precursor that is cleaved into three segments by a signal peptidase and SKI-1/S1P protease&amp;lt;ref name=&amp;quot;PMID:21612810&amp;quot;&amp;gt;PMID:21612810&amp;lt;/ref&amp;gt;. The functional spike complex consists of GP1, a membrane-anchored fusion protein (GP2), and a unique structured SSP &amp;lt;ref name=&amp;quot;PMID:23202458&amp;quot;&amp;gt;PMID:23202458&amp;lt;/ref&amp;gt;.                                                                                                                                                                                                                                                                                                                                                                                         &lt;br /&gt;
==Structural Highlights==&lt;br /&gt;
GP1 of LASV is a single chain structure with attached NAG glycans. The overall architecture of GP1 features a central β-sheet and two distinct halves: a glycosylated half containing the receptor-binding site that is made mostly by the central β-sheet and surrounding loops and a half that contains mostly helices and most likely faces the trimer axis)&amp;lt;ref name=&amp;quot;PMID: 25972533&amp;quot;&amp;gt;PMID: 25972533&amp;lt;/ref&amp;gt;. The method used to determine this structure was [http://en.wikipedia.org/wiki/X-ray_crystallography X-ray diffraction]&lt;br /&gt;
===LAMP1 Binding Site===&lt;br /&gt;
The primary cellular receptor of LASV is α-dystroglycan (α-DG)&amp;lt;ref name=&amp;quot;PMID: 9851928&amp;quot;&amp;gt;PMID: 9851928&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 15857984&amp;quot;&amp;gt;PMID: 15857984&amp;lt;/ref&amp;gt;, which is recognized by a trimeric class 1 viral GPC (spike complex) on the viral surface&amp;lt;ref name=&amp;quot;PMID: 16731928&amp;quot;&amp;gt;PMID: 16731928&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 26849049&amp;quot;&amp;gt;PMID: 26849049&amp;lt;/ref&amp;gt;. Following successful attachment to α-DG on cells, LASV is internalized via [http://en.wikipedia.org/wiki/Pinocytosis macropinocytosis]&amp;lt;ref name=&amp;quot;PMID: 27147735&amp;quot;&amp;gt;PMID: 27147735&amp;lt;/ref&amp;gt;, and the GPC facilitates membrane fusion at the acidic environment of a late endosomal compartment&amp;lt;ref name=&amp;quot;PMID: 16731928&amp;quot;&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 21931550&amp;quot;&amp;gt;PMID: 21931550 &amp;lt;/ref&amp;gt;. Recent studies have shown that successful infection by LASV requires it to switch in a pH-dependent manner from α-DG to LAMP1&amp;lt;ref name=&amp;quot;PMID: 27605678&amp;quot; /&amp;gt;&amp;lt;ref name=&amp;quot;PMID:24970085&amp;quot;&amp;gt;PMID:24970085&amp;lt;/ref&amp;gt;. Binding of the LAMP1 endosomal compartment triggers the spikes. &lt;br /&gt;
=== Histidine Triad===&lt;br /&gt;
Included in this structure is a unique triad of histidines that is highly conserved among OW arenaviruses. Located on the β-sheet face of GP1,  the histidine triad is a structural element that directly interacts with LAMP1 and helps stabilize a LAMP1-&amp;quot;compatible&amp;quot; conformation by providing a molecular mechanism for the pH-dependent receptor switching&amp;lt;ref name=&amp;quot;PMID: 25972533&amp;quot; /&amp;gt;. The histidine triad is critical in forming a binding site for LAMP1&amp;lt;ref name=&amp;quot;PMID: 28448640&amp;quot;&amp;gt;PMID: 28448640 &amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 27605678&amp;quot;&amp;gt;PMID: 27605678 &amp;lt;/ref&amp;gt;.&lt;br /&gt;
==Resources==&lt;br /&gt;
For more information on this protein structure visit the following sites: [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4zjf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4zjf OCA], [http://pdbe.org/4zjf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4zjf RCSB], [http://www.ebi.ac.uk/pdbsum/4zjf PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4zjf ProSAT]&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
== References ==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;br /&gt;
[[Category: Cohen, N]]&lt;br /&gt;
[[Category: Cohen-Dvashi, H]]&lt;br /&gt;
[[Category: Diskin, R]]&lt;br /&gt;
[[Category: Israeli, H]]&lt;br /&gt;
[[Category: Arenavirus]]&lt;br /&gt;
[[Category: Glycoprotein]]&lt;br /&gt;
[[Category: Lassa]]&lt;br /&gt;
[[Category: LASV]]&lt;br /&gt;
[[Category: Receptor binding]]&lt;br /&gt;
[[Category: Viral protein]]&lt;br /&gt;
[[Category: 4zjf]]&lt;br /&gt;
[[Category: GP1]]&lt;/div&gt;</summary>
		<author><name>Rebecca Holstein</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Elizeu/sandbox/citocromo_c&amp;diff=2757048</id>
		<title>Elizeu/sandbox/citocromo c</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Elizeu/sandbox/citocromo_c&amp;diff=2757048"/>
		<updated>2017-08-07T10:03:25Z</updated>

		<summary type="html">&lt;p&gt;Rebecca Holstein: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;==Importance==&lt;br /&gt;
Lassa virus (LASV), an Old World (OW) [http://en.wikipedia.org/wiki/Arenavirus arenavirus], is a notorious disease-causing agent primarily in West Africa that is able to spread from rodents to humans. This deadly pathogen causes severe viral hemorrhagic fevers and significant mortality. So far, there are no available vaccines for LASV, and only one successful vaccine against another virus found in the &#039;&#039;Arenaviridae&#039;&#039; family: Junin virus&amp;lt;ref name=&amp;quot;PMID: 9466512&amp;quot;&amp;gt;PMID: 9466512 &amp;lt;/ref&amp;gt;. Structural data at atomic resolution for viral proteins are laying the foundation for better understanding both the biology behind viral proteins and ways to combat against them. Determining the structure of the complete trimeric glycoprotein complex (GPC), composed of GP1, GP2, and SSP (stable signal peptide), will pave the path towards a future discovery of novel antiviral drugs. This is the first representative structure for OW arenaviruses. This structure reveals the overall architecture of GP1 domains from OW arenaviruses and important information relating to the mechanisms for pH switching and the binding of LASV to [[LAMP1]] (Lysosome-associated membrane glycoprotein), a recently identified host receptor that is critical for successful infection. In addition, structural analysis suggests two novel immune evasion mechanisms that LASV may utilize to escape antibody-based immune response.&lt;br /&gt;
== Function ==&lt;br /&gt;
&#039;&#039;&#039;GP1&#039;&#039;&#039; (Glycoprotein 1) is the receptor binding domain of LASV that mediates receptor recognition. Research thus far indicates that GP1 from LASV may undergo irreversible conformational changes that could serve as an immunological decoy mechanism. Arenaviruses utilize various cell surface proteins as their cellular receptors for recognizing and attaching to target cells. New World (NW) arenaviruses that belong to clades A and B use transferrin receptor 1 (TfR1)&amp;lt;ref name=&amp;quot;PMID:17287727&amp;quot;&amp;gt;PMID:17287727&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID:24920811&amp;quot;&amp;gt;PMID:24920811&amp;lt;/ref&amp;gt;, whereas OW arenaviruses, as well as clade C NW arenaviruses, use α-dystroglycan (α-DG) &amp;lt;ref name=&amp;quot;PMID:9851928&amp;quot;&amp;gt;PMID:9851928&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID:15857984&amp;quot;&amp;gt;PMID:15857984&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID:11967329&amp;quot;&amp;gt;PMID:11967329&amp;lt;/ref&amp;gt;. A trimeric class 1 viral glycoprotein complex (the spike complex) recognizes the cellular receptors and mediates membrane fusion upon exposure to low pH at the lysosome &amp;lt;ref name=&amp;quot;PMID:16731928&amp;quot;&amp;gt;PMID:16731928&amp;lt;/ref&amp;gt;. The spike complex is expressed as a glycoprotein precursor that is cleaved into three segments by a signal peptidase and SKI-1/S1P protease&amp;lt;ref name=&amp;quot;PMID:21612810&amp;quot;&amp;gt;PMID:21612810&amp;lt;/ref&amp;gt;. The functional spike complex consists of GP1, a membrane-anchored fusion protein (GP2), and a unique structured SSP &amp;lt;ref name=&amp;quot;PMID:23202458&amp;quot;&amp;gt;PMID:23202458&amp;lt;/ref&amp;gt;.                                                                                                                                                                                                                                                                                                                                                                                         &lt;br /&gt;
==Structural Highlights==&lt;br /&gt;
GP1 of LASV is a single chain structure with attached NAG glycans. The overall architecture of GP1 features a central β-sheet and two distinct halves: a glycosylated half containing the receptor-binding site that is made mostly by the central β-sheet and surrounding loops and a half that contains mostly helices and most likely faces the trimer axis)&amp;lt;ref name=&amp;quot;PMID: 25972533&amp;quot;&amp;gt;PMID: 25972533&amp;lt;/ref&amp;gt;. The method used to determine this structure was [http://en.wikipedia.org/wiki/X-ray_crystallography X-ray diffraction]&lt;br /&gt;
===LAMP1 Binding Site===&lt;br /&gt;
The primary cellular receptor of LASV is α-dystroglycan (α-DG)&amp;lt;ref name=&amp;quot;PMID: 9851928&amp;quot;&amp;gt;PMID: 9851928&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 15857984&amp;quot;&amp;gt;PMID: 15857984&amp;lt;/ref&amp;gt;, which is recognized by a trimeric class 1 viral GPC (spike complex) on the viral surface&amp;lt;ref name=&amp;quot;PMID: 16731928&amp;quot;&amp;gt;PMID: 16731928&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 26849049&amp;quot;&amp;gt;PMID: 26849049&amp;lt;/ref&amp;gt;. Following successful attachment to α-DG on cells, LASV is internalized via [http://en.wikipedia.org/wiki/Pinocytosis macropinocytosis]&amp;lt;ref name=&amp;quot;PMID: 27147735&amp;quot;&amp;gt;PMID: 27147735&amp;lt;/ref&amp;gt;, and the GPC facilitates membrane fusion at the acidic environment of a late endosomal compartment&amp;lt;ref name=&amp;quot;PMID: 16731928&amp;quot;&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 21931550&amp;quot;&amp;gt;PMID: 21931550 &amp;lt;/ref&amp;gt;. Recent studies have shown that successful infection by LASV requires it to switch in a pH-dependent manner from α-DG to LAMP1&amp;lt;ref name=&amp;quot;PMID: 27605678&amp;quot; /&amp;gt;&amp;lt;ref name=&amp;quot;PMID:24970085&amp;quot;&amp;gt;PMID:24970085&amp;lt;/ref&amp;gt;. Binding of the LAMP1 endosomal compartment triggers the spikes. &lt;br /&gt;
=== Histidine Triad===&lt;br /&gt;
Included in this structure is a unique triad of histidines that is highly conserved among OW arenaviruses. Located on the β-sheet face of GP1,  the histidine triad is a structural element that directly interacts with LAMP1 and helps stabilize a LAMP1-&amp;quot;compatible&amp;quot; conformation by providing a molecular mechanism for the pH-dependent receptor switching&amp;lt;ref name=&amp;quot;PMID: 25972533&amp;quot; /&amp;gt;. The histidine triad is critical in forming a binding site for LAMP1&amp;lt;ref name=&amp;quot;PMID: 28448640&amp;quot;&amp;gt;PMID: 28448640 &amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 27605678&amp;quot;&amp;gt;PMID: 27605678 &amp;lt;/ref&amp;gt;.&lt;br /&gt;
==Resources==&lt;br /&gt;
For more information on this protein structure visit the following sites: [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4zjf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4zjf OCA], [http://pdbe.org/4zjf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4zjf RCSB], [http://www.ebi.ac.uk/pdbsum/4zjf PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4zjf ProSAT]&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
== References ==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;br /&gt;
[[Category: Cohen, N]]&lt;br /&gt;
[[Category: Cohen-Dvashi, H]]&lt;br /&gt;
[[Category: Diskin, R]]&lt;br /&gt;
[[Category: Israeli, H]]&lt;br /&gt;
[[Category: Arenavirus]]&lt;br /&gt;
[[Category: Glycoprotein]]&lt;br /&gt;
[[Category: Lassa]]&lt;br /&gt;
[[Category: LASV]]&lt;br /&gt;
[[Category: Receptor binding]]&lt;br /&gt;
[[Category: Viral protein]]&lt;br /&gt;
[[Category: 4zjf]]&lt;br /&gt;
[[Category: GP1]]&lt;/div&gt;</summary>
		<author><name>Rebecca Holstein</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Elizeu/sandbox/citocromo_c&amp;diff=2757046</id>
		<title>Elizeu/sandbox/citocromo c</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Elizeu/sandbox/citocromo_c&amp;diff=2757046"/>
		<updated>2017-08-07T09:53:16Z</updated>

		<summary type="html">&lt;p&gt;Rebecca Holstein: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;Structure load=&#039;4zjf&#039; size=&#039;350&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;GP1 of Lassa Virus&#039; scene=&#039;Insert optional scene name here&#039; /&amp;gt;&lt;br /&gt;
==Importance==&lt;br /&gt;
Lassa virus (LASV), an Old World (OW) [http://en.wikipedia.org/wiki/Arenavirus arenavirus], is a notorious disease-causing agent primarily in West Africa that is able to spread from rodents to humans. This deadly pathogen causes severe viral hemorrhagic fevers and significant mortality. So far, there are no available vaccines for LASV, and only one successful vaccine against another virus found in the &#039;&#039;Arenaviridae&#039;&#039; family: Junin virus&amp;lt;ref name=&amp;quot;PMID: 9466512&amp;quot;&amp;gt;PMID: 9466512 &amp;lt;/ref&amp;gt;. Structural data at atomic resolution for viral proteins are laying the foundation for better understanding both the biology behind viral proteins and ways to combat against them. Determining the structure of the complete trimeric glycoprotein complex (GPC), composed of GP1, GP2, and SSP (stable signal peptide), will pave the path towards a future discovery of novel antiviral drugs. This is the first representative structure for OW arenaviruses. This structure reveals the overall architecture of GP1 domains from OW arenaviruses and important information relating to the mechanisms for pH switching and the binding of LASV to [[LAMP1]] (Lysosome-associated membrane glycoprotein), a recently identified host receptor that is critical for successful infection. In addition, structural analysis suggests two novel immune evasion mechanisms that LASV may utilize to escape antibody-based immune response.&lt;br /&gt;
== Function ==&lt;br /&gt;
&#039;&#039;&#039;GP1&#039;&#039;&#039; (Glycoprotein 1) is the receptor binding domain of LASV that mediates receptor recognition. Research thus far indicates that GP1 from LASV may undergo irreversible conformational changes that could serve as an immunological decoy mechanism. Arenaviruses utilize various cell surface proteins as their cellular receptors for recognizing and attaching to target cells. New World (NW) arenaviruses that belong to clades A and B use transferrin receptor 1 (TfR1)&amp;lt;ref name=&amp;quot;PMID:17287727&amp;quot;&amp;gt;PMID:17287727&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID:24920811&amp;quot;&amp;gt;PMID:24920811&amp;lt;/ref&amp;gt;, whereas OW arenaviruses, as well as clade C NW arenaviruses, use α-dystroglycan (α-DG) &amp;lt;ref name=&amp;quot;PMID:9851928&amp;quot;&amp;gt;PMID:9851928&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID:15857984&amp;quot;&amp;gt;PMID:15857984&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID:11967329&amp;quot;&amp;gt;PMID:11967329&amp;lt;/ref&amp;gt;. A trimeric class 1 viral glycoprotein complex (the spike complex) recognizes the cellular receptors and mediates membrane fusion upon exposure to low pH at the lysosome &amp;lt;ref name=&amp;quot;PMID:16731928&amp;quot;&amp;gt;PMID:16731928&amp;lt;/ref&amp;gt;. The spike complex is expressed as a glycoprotein precursor that is cleaved into three segments by a signal peptidase and SKI-1/S1P protease&amp;lt;ref name=&amp;quot;PMID:21612810&amp;quot;&amp;gt;PMID:21612810&amp;lt;/ref&amp;gt;. The functional spike complex consists of GP1, a membrane-anchored fusion protein (GP2), and a unique structured SSP &amp;lt;ref name=&amp;quot;PMID:23202458&amp;quot;&amp;gt;PMID:23202458&amp;lt;/ref&amp;gt;.                                                                                                                                                                                                                                                                                                                                                                                         &lt;br /&gt;
==Structural Highlights==&lt;br /&gt;
GP1 of LASV is a single chain structure with attached NAG glycans. The overall architecture of GP1 features a central β-sheet and two distinct halves: a glycosylated half containing the receptor-binding site that is made mostly by the central β-sheet and surrounding loops and a half that contains mostly helices and most likely faces the trimer axis)&amp;lt;ref name=&amp;quot;PMID: 25972533&amp;quot;&amp;gt;PMID: 25972533&amp;lt;/ref&amp;gt;. The method used to determine this structure was [http://en.wikipedia.org/wiki/X-ray_crystallography X-ray diffraction]&lt;br /&gt;
===LAMP1 Binding Site===&lt;br /&gt;
The primary cellular receptor of LASV is α-dystroglycan (α-DG)&amp;lt;ref name=&amp;quot;PMID: 9851928&amp;quot;&amp;gt;PMID: 9851928&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 15857984&amp;quot;&amp;gt;PMID: 15857984&amp;lt;/ref&amp;gt;, which is recognized by a trimeric class 1 viral GPC (spike complex) on the viral surface&amp;lt;ref name=&amp;quot;PMID: 16731928&amp;quot;&amp;gt;PMID: 16731928&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 26849049&amp;quot;&amp;gt;PMID: 26849049&amp;lt;/ref&amp;gt;. Following successful attachment to α-DG on cells, LASV is internalized via [http://en.wikipedia.org/wiki/Pinocytosis macropinocytosis]&amp;lt;ref name=&amp;quot;PMID: 27147735&amp;quot;&amp;gt;PMID: 27147735&amp;lt;/ref&amp;gt;, and the GPC facilitates membrane fusion at the acidic environment of a late endosomal compartment&amp;lt;ref name=&amp;quot;PMID: 16731928&amp;quot;&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 21931550&amp;quot;&amp;gt;PMID: 21931550 &amp;lt;/ref&amp;gt;. Recent studies have shown that successful infection by LASV requires it to switch in a pH-dependent manner from α-DG to LAMP1&amp;lt;ref name=&amp;quot;PMID: 27605678&amp;quot; /&amp;gt;&amp;lt;ref name=&amp;quot;PMID:24970085&amp;quot;&amp;gt;PMID:24970085&amp;lt;/ref&amp;gt;. Binding of the LAMP1 endosomal compartment triggers the spikes. &lt;br /&gt;
=== Histidine Triad===&lt;br /&gt;
Included in this structure is a unique triad of histidines that is highly conserved among OW arenaviruses. Located on the β-sheet face of GP1,  the histidine triad is a structural element that directly interacts with LAMP1 and helps stabilize a LAMP1-&amp;quot;compatible&amp;quot; conformation by providing a molecular mechanism for the pH-dependent receptor switching&amp;lt;ref name=&amp;quot;PMID: 25972533&amp;quot; /&amp;gt;. The histidine triad is critical in forming a binding site for LAMP1&amp;lt;ref name=&amp;quot;PMID: 28448640&amp;quot;&amp;gt;PMID: 28448640 &amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 27605678&amp;quot;&amp;gt;PMID: 27605678 &amp;lt;/ref&amp;gt;.&lt;br /&gt;
==Resources==&lt;br /&gt;
For more information on this protein structure visit the following sites: [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4zjf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4zjf OCA], [http://pdbe.org/4zjf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4zjf RCSB], [http://www.ebi.ac.uk/pdbsum/4zjf PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4zjf ProSAT]&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
== References ==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;br /&gt;
[[Category: Cohen, N]]&lt;br /&gt;
[[Category: Cohen-Dvashi, H]]&lt;br /&gt;
[[Category: Diskin, R]]&lt;br /&gt;
[[Category: Israeli, H]]&lt;br /&gt;
[[Category: Arenavirus]]&lt;br /&gt;
[[Category: Glycoprotein]]&lt;br /&gt;
[[Category: Lassa]]&lt;br /&gt;
[[Category: LASV]]&lt;br /&gt;
[[Category: Receptor binding]]&lt;br /&gt;
[[Category: Viral protein]]&lt;br /&gt;
[[Category: 4zjf]]&lt;br /&gt;
[[Category: GP1]]&lt;/div&gt;</summary>
		<author><name>Rebecca Holstein</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Elizeu/sandbox/citocromo_c&amp;diff=2757045</id>
		<title>Elizeu/sandbox/citocromo c</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Elizeu/sandbox/citocromo_c&amp;diff=2757045"/>
		<updated>2017-08-07T09:52:00Z</updated>

		<summary type="html">&lt;p&gt;Rebecca Holstein: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;==Importance==&lt;br /&gt;
Lassa virus (LASV), an Old World (OW) [http://en.wikipedia.org/wiki/Arenavirus arenavirus], is a notorious disease-causing agent primarily in West Africa that is able to spread from rodents to humans. This deadly pathogen causes severe viral hemorrhagic fevers and significant mortality. So far, there are no available vaccines for LASV, and only one successful vaccine against another virus found in the &#039;&#039;Arenaviridae&#039;&#039; family: Junin virus&amp;lt;ref name=&amp;quot;PMID: 9466512&amp;quot;&amp;gt;PMID: 9466512 &amp;lt;/ref&amp;gt;. Structural data at atomic resolution for viral proteins are laying the foundation for better understanding both the biology behind viral proteins and ways to combat against them. Determining the structure of the complete trimeric glycoprotein complex (GPC), composed of GP1, GP2, and SSP (stable signal peptide), will pave the path towards a future discovery of novel antiviral drugs. This is the first representative structure for OW arenaviruses. This structure reveals the overall architecture of GP1 domains from OW arenaviruses and important information relating to the mechanisms for pH switching and the binding of LASV to [[LAMP1]] (Lysosome-associated membrane glycoprotein), a recently identified host receptor that is critical for successful infection. In addition, structural analysis suggests two novel immune evasion mechanisms that LASV may utilize to escape antibody-based immune response.&lt;br /&gt;
== Function ==&lt;br /&gt;
&#039;&#039;&#039;GP1&#039;&#039;&#039; (Glycoprotein 1) is the receptor binding domain of LASV that mediates receptor recognition. Research thus far indicates that GP1 from LASV may undergo irreversible conformational changes that could serve as an immunological decoy mechanism. Arenaviruses utilize various cell surface proteins as their cellular receptors for recognizing and attaching to target cells. New World (NW) arenaviruses that belong to clades A and B use transferrin receptor 1 (TfR1)&amp;lt;ref name=&amp;quot;PMID:17287727&amp;quot;&amp;gt;PMID:17287727&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID:24920811&amp;quot;&amp;gt;PMID:24920811&amp;lt;/ref&amp;gt;, whereas OW arenaviruses, as well as clade C NW arenaviruses, use α-dystroglycan (α-DG) &amp;lt;ref name=&amp;quot;PMID:9851928&amp;quot;&amp;gt;PMID:9851928&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID:15857984&amp;quot;&amp;gt;PMID:15857984&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID:11967329&amp;quot;&amp;gt;PMID:11967329&amp;lt;/ref&amp;gt;. A trimeric class 1 viral glycoprotein complex (the spike complex) recognizes the cellular receptors and mediates membrane fusion upon exposure to low pH at the lysosome &amp;lt;ref name=&amp;quot;PMID:16731928&amp;quot;&amp;gt;PMID:16731928&amp;lt;/ref&amp;gt;. The spike complex is expressed as a glycoprotein precursor that is cleaved into three segments by a signal peptidase and SKI-1/S1P protease&amp;lt;ref name=&amp;quot;PMID:21612810&amp;quot;&amp;gt;PMID:21612810&amp;lt;/ref&amp;gt;. The functional spike complex consists of GP1, a membrane-anchored fusion protein (GP2), and a unique structured SSP &amp;lt;ref name=&amp;quot;PMID:23202458&amp;quot;&amp;gt;PMID:23202458&amp;lt;/ref&amp;gt;.                                                                                                                                                                                                                                                                                                                                                                                         &lt;br /&gt;
==Structural Highlights==&lt;br /&gt;
GP1 of LASV is a single chain structure with attached NAG glycans. The overall architecture of GP1 features a central β-sheet and two distinct halves: a glycosylated half containing the receptor-binding site that is made mostly by the central β-sheet and surrounding loops and a half that contains mostly helices and most likely faces the trimer axis)&amp;lt;ref name=&amp;quot;PMID: 25972533&amp;quot;&amp;gt;PMID: 25972533&amp;lt;/ref&amp;gt;. The method used to determine this structure was [http://en.wikipedia.org/wiki/X-ray_crystallography X-ray diffraction]&lt;br /&gt;
===LAMP1 Binding Site===&lt;br /&gt;
The primary cellular receptor of LASV is α-dystroglycan (α-DG)&amp;lt;ref name=&amp;quot;PMID: 9851928&amp;quot;&amp;gt;PMID: 9851928&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 15857984&amp;quot;&amp;gt;PMID: 15857984&amp;lt;/ref&amp;gt;, which is recognized by a trimeric class 1 viral GPC (spike complex) on the viral surface&amp;lt;ref name=&amp;quot;PMID: 16731928&amp;quot;&amp;gt;PMID: 16731928&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 26849049&amp;quot;&amp;gt;PMID: 26849049&amp;lt;/ref&amp;gt;. Following successful attachment to α-DG on cells, LASV is internalized via [http://en.wikipedia.org/wiki/Pinocytosis macropinocytosis]&amp;lt;ref name=&amp;quot;PMID: 27147735&amp;quot;&amp;gt;PMID: 27147735&amp;lt;/ref&amp;gt;, and the GPC facilitates membrane fusion at the acidic environment of a late endosomal compartment&amp;lt;ref name=&amp;quot;PMID: 16731928&amp;quot;&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 21931550&amp;quot;&amp;gt;PMID: 21931550 &amp;lt;/ref&amp;gt;. Recent studies have shown that successful infection by LASV requires it to switch in a pH-dependent manner from α-DG to LAMP1&amp;lt;ref name=&amp;quot;PMID: 27605678&amp;quot; /&amp;gt;&amp;lt;ref name=&amp;quot;PMID:24970085&amp;quot;&amp;gt;PMID:24970085&amp;lt;/ref&amp;gt;. Binding of the LAMP1 endosomal compartment triggers the spikes. &lt;br /&gt;
=== Histidine Triad===&lt;br /&gt;
Included in this structure is a unique triad of histidines that is highly conserved among OW arenaviruses. Located on the β-sheet face of GP1,  the histidine triad is a structural element that directly interacts with LAMP1 and helps stabilize a LAMP1-&amp;quot;compatible&amp;quot; conformation by providing a molecular mechanism for the pH-dependent receptor switching&amp;lt;ref name=&amp;quot;PMID: 25972533&amp;quot; /&amp;gt;. The histidine triad is critical in forming a binding site for LAMP1&amp;lt;ref name=&amp;quot;PMID: 28448640&amp;quot;&amp;gt;PMID: 28448640 &amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 27605678&amp;quot;&amp;gt;PMID: 27605678 &amp;lt;/ref&amp;gt;.&lt;br /&gt;
==Resources==&lt;br /&gt;
For more information on this protein structure visit the following sites: [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4zjf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4zjf OCA], [http://pdbe.org/4zjf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4zjf RCSB], [http://www.ebi.ac.uk/pdbsum/4zjf PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4zjf ProSAT]&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
== References ==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;br /&gt;
[[Category: Cohen, N]]&lt;br /&gt;
[[Category: Cohen-Dvashi, H]]&lt;br /&gt;
[[Category: Diskin, R]]&lt;br /&gt;
[[Category: Israeli, H]]&lt;br /&gt;
[[Category: Arenavirus]]&lt;br /&gt;
[[Category: Glycoprotein]]&lt;br /&gt;
[[Category: Lassa]]&lt;br /&gt;
[[Category: LASV]]&lt;br /&gt;
[[Category: Receptor binding]]&lt;br /&gt;
[[Category: Viral protein]]&lt;br /&gt;
[[Category: 4zjf]]&lt;br /&gt;
[[Category: GP1]]&lt;/div&gt;</summary>
		<author><name>Rebecca Holstein</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Elizeu/sandbox/citocromo_c&amp;diff=2757044</id>
		<title>Elizeu/sandbox/citocromo c</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Elizeu/sandbox/citocromo_c&amp;diff=2757044"/>
		<updated>2017-08-07T09:50:02Z</updated>

		<summary type="html">&lt;p&gt;Rebecca Holstein: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;Structure load=&#039;4zjf&#039; size=&#039;350&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;GP1 of Lassa Virus&#039; scene=&#039;Insert optional scene name here&#039; /&amp;gt;&lt;br /&gt;
==Importance==&lt;br /&gt;
Lassa virus (LASV), an Old World (OW) [http://en.wikipedia.org/wiki/Arenavirus arenavirus], is a notorious disease-causing agent primarily in West Africa that is able to spread from rodents to humans. This deadly pathogen causes severe viral hemorrhagic fevers and significant mortality. So far, there are no available vaccines for LASV, and only one successful vaccine against another virus found in the &#039;&#039;Arenaviridae&#039;&#039; family: Junin virus&amp;lt;ref name=&amp;quot;PMID: 9466512&amp;quot;&amp;gt;PMID: 9466512 &amp;lt;/ref&amp;gt;. Structural data at atomic resolution for viral proteins are laying the foundation for better understanding both the biology behind viral proteins and ways to combat against them. Determining the structure of the complete trimeric glycoprotein complex (GPC), composed of GP1, GP2, and SSP (stable signal peptide), will pave the path towards a future discovery of novel antiviral drugs. This is the first representative structure for OW arenaviruses. This structure reveals the overall architecture of GP1 domains from OW arenaviruses and important information relating to the mechanisms for pH switching and the binding of LASV to [[LAMP1]] (Lysosome-associated membrane glycoprotein), a recently identified host receptor that is critical for successful infection. In addition, structural analysis suggests two novel immune evasion mechanisms that LASV may utilize to escape antibody-based immune response.&lt;br /&gt;
== Function ==&lt;br /&gt;
&#039;&#039;&#039;GP1&#039;&#039;&#039; (Glycoprotein 1) is the receptor binding domain of LASV that mediates receptor recognition. Research thus far indicates that GP1 from LASV may undergo irreversible conformational changes that could serve as an immunological decoy mechanism. Arenaviruses utilize various cell surface proteins as their cellular receptors for recognizing and attaching to target cells. New World (NW) arenaviruses that belong to clades A and B use transferrin receptor 1 (TfR1)&amp;lt;ref name=&amp;quot;PMID:17287727&amp;quot;&amp;gt;PMID:17287727&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID:24920811&amp;quot;&amp;gt;PMID:24920811&amp;lt;/ref&amp;gt;, whereas OW arenaviruses, as well as clade C NW arenaviruses, use α-dystroglycan (α-DG) &amp;lt;ref name=&amp;quot;PMID:9851928&amp;quot;&amp;gt;PMID:9851928&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID:15857984&amp;quot;&amp;gt;PMID:15857984&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID:11967329&amp;quot;&amp;gt;PMID:11967329&amp;lt;/ref&amp;gt;. A trimeric class 1 viral glycoprotein complex (the spike complex) recognizes the cellular receptors and mediates membrane fusion upon exposure to low pH at the lysosome &amp;lt;ref name=&amp;quot;PMID:16731928&amp;quot;&amp;gt;PMID:16731928&amp;lt;/ref&amp;gt;. The spike complex is expressed as a glycoprotein precursor that is cleaved into three segments by a signal peptidase and SKI-1/S1P protease&amp;lt;ref name=&amp;quot;PMID:21612810&amp;quot;&amp;gt;PMID:21612810&amp;lt;/ref&amp;gt;. The functional spike complex consists of GP1, a membrane-anchored fusion protein (GP2), and a unique structured SSP &amp;lt;ref name=&amp;quot;PMID:23202458&amp;quot;&amp;gt;PMID:23202458&amp;lt;/ref&amp;gt;.                                                                                                                                                                                                                                                                                                                                                                                         &lt;br /&gt;
==Structural Highlights==&lt;br /&gt;
GP1 of LASV is a single chain structure with attached NAG glycans. The overall architecture of GP1 features a central β-sheet and two distinct halves: a glycosylated half containing the receptor-binding site that is made mostly by the central β-sheet and surrounding loops and a half that contains mostly helices and most likely faces the trimer axis)&amp;lt;ref name=&amp;quot;PMID: 25972533&amp;quot;&amp;gt;PMID: 25972533&amp;lt;/ref&amp;gt;. The method used to determine this structure was [http://en.wikipedia.org/wiki/X-ray_crystallography X-ray diffraction]&lt;br /&gt;
===LAMP1 Binding Site===&lt;br /&gt;
The primary cellular receptor of LASV is α-dystroglycan (α-DG)&amp;lt;ref name=&amp;quot;PMID: 9851928&amp;quot;&amp;gt;PMID: 9851928&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 15857984&amp;quot;&amp;gt;PMID: 15857984&amp;lt;/ref&amp;gt;, which is recognized by a trimeric class 1 viral GPC (spike complex) on the viral surface&amp;lt;ref name=&amp;quot;PMID: 16731928&amp;quot;&amp;gt;PMID: 16731928&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 26849049&amp;quot;&amp;gt;PMID: 26849049&amp;lt;/ref&amp;gt;. Following successful attachment to α-DG on cells, LASV is internalized via [http://en.wikipedia.org/wiki/Pinocytosis macropinocytosis]&amp;lt;ref name=&amp;quot;PMID: 27147735&amp;quot;&amp;gt;PMID: 27147735&amp;lt;/ref&amp;gt;, and the GPC facilitates membrane fusion at the acidic environment of a late endosomal compartment&amp;lt;ref name=&amp;quot;PMID: 16731928&amp;quot;&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 21931550&amp;quot;&amp;gt;PMID: 21931550 &amp;lt;/ref&amp;gt;. Recent studies have shown that successful infection by LASV requires it to switch in a pH-dependent manner from α-DG to LAMP1&amp;lt;ref name=&amp;quot;PMID: 27605678&amp;quot; /&amp;gt;&amp;lt;ref name=&amp;quot;PMID:24970085&amp;quot;&amp;gt;PMID:24970085&amp;lt;/ref&amp;gt;. Binding of the LAMP1 endosomal compartment triggers the spikes. &lt;br /&gt;
=== Histidine Triad===&lt;br /&gt;
Included in this structure is a unique triad of histidines that is highly conserved among OW arenaviruses. Located on the β-sheet face of GP1,  the histidine triad is a structural element that directly interacts with LAMP1 and helps stabilize a LAMP1-&amp;quot;compatible&amp;quot; conformation by providing a molecular mechanism for the pH-dependent receptor switching&amp;lt;ref name=&amp;quot;PMID: 25972533&amp;quot; /&amp;gt;. The histidine triad is critical in forming a binding site for LAMP1&amp;lt;ref name=&amp;quot;PMID: 28448640&amp;quot;&amp;gt;PMID: 28448640 &amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 27605678&amp;quot;&amp;gt;PMID: 27605678 &amp;lt;/ref&amp;gt;.&lt;br /&gt;
==Resources==&lt;br /&gt;
For more information on this protein structure visit the following sites: [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4zjf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4zjf OCA], [http://pdbe.org/4zjf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4zjf RCSB], [http://www.ebi.ac.uk/pdbsum/4zjf PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4zjf ProSAT]&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
== References ==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;br /&gt;
[[Category: Cohen, N]]&lt;br /&gt;
[[Category: Cohen-Dvashi, H]]&lt;br /&gt;
[[Category: Diskin, R]]&lt;br /&gt;
[[Category: Israeli, H]]&lt;br /&gt;
[[Category: Arenavirus]]&lt;br /&gt;
[[Category: Glycoprotein]]&lt;br /&gt;
[[Category: Lassa]]&lt;br /&gt;
[[Category: LASV]]&lt;br /&gt;
[[Category: Receptor binding]]&lt;br /&gt;
[[Category: Viral protein]]&lt;br /&gt;
[[Category: 4zjf]]&lt;br /&gt;
[[Category: GP1]]&lt;/div&gt;</summary>
		<author><name>Rebecca Holstein</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Elizeu/sandbox/citocromo_c&amp;diff=2757042</id>
		<title>Elizeu/sandbox/citocromo c</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Elizeu/sandbox/citocromo_c&amp;diff=2757042"/>
		<updated>2017-08-07T09:44:16Z</updated>

		<summary type="html">&lt;p&gt;Rebecca Holstein: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;==Importance==&lt;br /&gt;
Lassa virus (LASV), an Old World (OW) [http://en.wikipedia.org/wiki/Arenavirus arenavirus], is a notorious disease-causing agent primarily in West Africa that is able to spread from rodents to humans. This deadly pathogen causes severe viral hemorrhagic fevers and significant mortality. So far, there are no available vaccines for LASV, and only one successful vaccine against another virus found in the &#039;&#039;Arenaviridae&#039;&#039; family: Junin virus&amp;lt;ref name=&amp;quot;PMID: 9466512&amp;quot;&amp;gt;PMID: 9466512 &amp;lt;/ref&amp;gt;. Structural data at atomic resolution for viral proteins are laying the foundation for better understanding both the biology behind viral proteins and ways to combat against them. Determining the structure of the complete trimeric glycoprotein complex (GPC), composed of GP1, GP2, and SSP (stable signal peptide), will pave the path towards a future discovery of novel antiviral drugs. This is the first representative structure for OW arenaviruses. This structure reveals the overall architecture of GP1 domains from OW arenaviruses and important information relating to the mechanisms for pH switching and the binding of LASV to [[LAMP1]] (Lysosome-associated membrane glycoprotein), a recently identified host receptor that is critical for successful infection. In addition, structural analysis suggests two novel immune evasion mechanisms that LASV may utilize to escape antibody-based immune response.&lt;br /&gt;
== Function ==&lt;br /&gt;
&#039;&#039;&#039;GP1&#039;&#039;&#039; (Glycoprotein 1) is the receptor binding domain of LASV that mediates receptor recognition. Research thus far indicates that GP1 from LASV may undergo irreversible conformational changes that could serve as an immunological decoy mechanism. Arenaviruses utilize various cell surface proteins as their cellular receptors for recognizing and attaching to target cells. New World (NW) arenaviruses that belong to clades A and B use transferrin receptor 1 (TfR1)&amp;lt;ref name=&amp;quot;PMID:17287727&amp;quot;&amp;gt;PMID:17287727&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID:24920811&amp;quot;&amp;gt;PMID:24920811&amp;lt;/ref&amp;gt;, whereas OW arenaviruses, as well as clade C NW arenaviruses, use α-dystroglycan (α-DG) &amp;lt;ref name=&amp;quot;PMID:9851928&amp;quot;&amp;gt;PMID:9851928&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID:15857984&amp;quot;&amp;gt;PMID:15857984&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID:11967329&amp;quot;&amp;gt;PMID:11967329&amp;lt;/ref&amp;gt;. A trimeric class 1 viral glycoprotein complex (the spike complex) recognizes the cellular receptors and mediates membrane fusion upon exposure to low pH at the lysosome &amp;lt;ref name=&amp;quot;PMID:16731928&amp;quot;&amp;gt;PMID:16731928&amp;lt;/ref&amp;gt;. The spike complex is expressed as a glycoprotein precursor that is cleaved into three segments by a signal peptidase and SKI-1/S1P protease&amp;lt;ref name=&amp;quot;PMID:21612810&amp;quot;&amp;gt;PMID:21612810&amp;lt;/ref&amp;gt;. The functional spike complex consists of GP1, a membrane-anchored fusion protein (GP2), and a unique structured SSP &amp;lt;ref name=&amp;quot;PMID:23202458&amp;quot;&amp;gt;PMID:23202458&amp;lt;/ref&amp;gt;.                                                                                                                                                                                                                                                                                                                                                                                         &lt;br /&gt;
==Structural Highlights==&lt;br /&gt;
GP1 of LASV is a single chain structure with attached NAG glycans. The overall architecture of GP1 features a central β-sheet and two distinct halves: a glycosylated half containing the receptor-binding site that is made mostly by the central β-sheet and surrounding loops and a half that contains mostly helices and most likely faces the trimer axis)&amp;lt;ref name=&amp;quot;PMID: 25972533&amp;quot;&amp;gt;PMID: 25972533&amp;lt;/ref&amp;gt;. The method used to determine this structure was [http://en.wikipedia.org/wiki/X-ray_crystallography X-ray diffraction]&lt;br /&gt;
===LAMP1 Binding Site===&lt;br /&gt;
The primary cellular receptor of LASV is α-dystroglycan (α-DG)&amp;lt;ref name=&amp;quot;PMID: 9851928&amp;quot;&amp;gt;PMID: 9851928&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 15857984&amp;quot;&amp;gt;PMID: 15857984&amp;lt;/ref&amp;gt;, which is recognized by a trimeric class 1 viral GPC (spike complex) on the viral surface&amp;lt;ref name=&amp;quot;PMID: 16731928&amp;quot;&amp;gt;PMID: 16731928&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 26849049&amp;quot;&amp;gt;PMID: 26849049&amp;lt;/ref&amp;gt;. Following successful attachment to α-DG on cells, LASV is internalized via [http://en.wikipedia.org/wiki/Pinocytosis macropinocytosis]&amp;lt;ref name=&amp;quot;PMID: 27147735&amp;quot;&amp;gt;PMID: 27147735&amp;lt;/ref&amp;gt;, and the GPC facilitates membrane fusion at the acidic environment of a late endosomal compartment&amp;lt;ref name=&amp;quot;PMID: 16731928&amp;quot;&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 21931550&amp;quot;&amp;gt;PMID: 21931550 &amp;lt;/ref&amp;gt;. Recent studies have shown that successful infection by LASV requires it to switch in a pH-dependent manner from α-DG to LAMP1&amp;lt;ref name=&amp;quot;PMID: 27605678&amp;quot; /&amp;gt;&amp;lt;ref name=&amp;quot;PMID:24970085&amp;quot;&amp;gt;PMID:24970085&amp;lt;/ref&amp;gt;. Binding of the LAMP1 endosomal compartment triggers the spikes. &lt;br /&gt;
=== Histidine Triad===&lt;br /&gt;
Included in this structure is a unique triad of histidines that is highly conserved among OW arenaviruses. Located on the β-sheet face of GP1,  the histidine triad is a structural element that directly interacts with LAMP1 and helps stabilize a LAMP1-&amp;quot;compatible&amp;quot; conformation by providing a molecular mechanism for the pH-dependent receptor switching&amp;lt;ref name=&amp;quot;PMID: 25972533&amp;quot; /&amp;gt;. The histidine triad is critical in forming a binding site for LAMP1&amp;lt;ref name=&amp;quot;PMID: 28448640&amp;quot;&amp;gt;PMID: 28448640 &amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 27605678&amp;quot;&amp;gt;PMID: 27605678 &amp;lt;/ref&amp;gt;.&lt;br /&gt;
==Resources==&lt;br /&gt;
For more information on this protein structure visit the following sites: [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4zjf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4zjf OCA], [http://pdbe.org/4zjf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4zjf RCSB], [http://www.ebi.ac.uk/pdbsum/4zjf PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4zjf ProSAT]&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
== References ==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;br /&gt;
[[Category: Cohen, N]]&lt;br /&gt;
[[Category: Cohen-Dvashi, H]]&lt;br /&gt;
[[Category: Diskin, R]]&lt;br /&gt;
[[Category: Israeli, H]]&lt;br /&gt;
[[Category: Arenavirus]]&lt;br /&gt;
[[Category: Glycoprotein]]&lt;br /&gt;
[[Category: Lassa]]&lt;br /&gt;
[[Category: LASV]]&lt;br /&gt;
[[Category: Receptor binding]]&lt;br /&gt;
[[Category: Viral protein]]&lt;br /&gt;
[[Category: 4zjf]]&lt;br /&gt;
[[Category: GP1]]&lt;/div&gt;</summary>
		<author><name>Rebecca Holstein</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Elizeu/sandbox/citocromo_c&amp;diff=2757041</id>
		<title>Elizeu/sandbox/citocromo c</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Elizeu/sandbox/citocromo_c&amp;diff=2757041"/>
		<updated>2017-08-07T09:42:35Z</updated>

		<summary type="html">&lt;p&gt;Rebecca Holstein: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;Structure load=&#039;4zjf&#039; size=&#039;350&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;GP1 of Lassa Virus&#039; scene=&#039;Insert optional scene name here&#039; /&amp;gt;&lt;br /&gt;
==Importance==&lt;br /&gt;
Lassa virus (LASV), an Old World (OW) [http://en.wikipedia.org/wiki/Arenavirus arenavirus], is a notorious disease-causing agent primarily in West Africa that is able to spread from rodents to humans. This deadly pathogen causes severe viral hemorrhagic fevers and significant mortality. So far, there are no available vaccines for LASV, and only one successful vaccine against another virus found in the &#039;&#039;Arenaviridae&#039;&#039; family: Junin virus&amp;lt;ref name=&amp;quot;PMID: 9466512&amp;quot;&amp;gt;PMID: 9466512 &amp;lt;/ref&amp;gt;. Structural data at atomic resolution for viral proteins are laying the foundation for better understanding both the biology behind viral proteins and ways to combat against them. Determining the structure of the complete trimeric glycoprotein complex (GPC), composed of GP1, GP2, and SSP (stable signal peptide), will pave the path towards a future discovery of novel antiviral drugs. This is the first representative structure for OW arenaviruses. This structure reveals the overall architecture of GP1 domains from OW arenaviruses and important information relating to the mechanisms for pH switching and the binding of LASV to [[LAMP1]] (Lysosome-associated membrane glycoprotein), a recently identified host receptor that is critical for successful infection. In addition, structural analysis suggests two novel immune evasion mechanisms that LASV may utilize to escape antibody-based immune response.&lt;br /&gt;
== Function ==&lt;br /&gt;
&#039;&#039;&#039;GP1&#039;&#039;&#039; (Glycoprotein 1) is the receptor binding domain of LASV that mediates receptor recognition. Research thus far indicates that GP1 from LASV may undergo irreversible conformational changes that could serve as an immunological decoy mechanism. Arenaviruses utilize various cell surface proteins as their cellular receptors for recognizing and attaching to target cells. New World (NW) arenaviruses that belong to clades A and B use transferrin receptor 1 (TfR1)&amp;lt;ref name=&amp;quot;PMID:17287727&amp;quot;&amp;gt;PMID:17287727&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID:24920811&amp;quot;&amp;gt;PMID:24920811&amp;lt;/ref&amp;gt;, whereas OW arenaviruses, as well as clade C NW arenaviruses, use α-dystroglycan (α-DG) &amp;lt;ref name=&amp;quot;PMID:9851928&amp;quot;&amp;gt;PMID:9851928&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID:15857984&amp;quot;&amp;gt;PMID:15857984&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID:11967329&amp;quot;&amp;gt;PMID:11967329&amp;lt;/ref&amp;gt;. A trimeric class 1 viral glycoprotein complex (the spike complex) recognizes the cellular receptors and mediates membrane fusion upon exposure to low pH at the lysosome &amp;lt;ref name=&amp;quot;PMID:16731928&amp;quot;&amp;gt;PMID:16731928&amp;lt;/ref&amp;gt;. The spike complex is expressed as a glycoprotein precursor that is cleaved into three segments by a signal peptidase and SKI-1/S1P protease&amp;lt;ref name=&amp;quot;PMID:21612810&amp;quot;&amp;gt;PMID:21612810&amp;lt;/ref&amp;gt;. The functional spike complex consists of GP1, a membrane-anchored fusion protein (GP2), and a unique structured SSP &amp;lt;ref name=&amp;quot;PMID:23202458&amp;quot;&amp;gt;PMID:23202458&amp;lt;/ref&amp;gt;.                                                                                                                                                                                                                                                                                                                                                                                         &lt;br /&gt;
==Structural Highlights==&lt;br /&gt;
GP1 of LASV is a single chain structure with attached NAG glycans. The overall architecture of GP1 features a central β-sheet and two distinct halves: a glycosylated half containing the receptor-binding site that is made mostly by the central β-sheet and surrounding loops and a half that contains mostly helices and most likely faces the trimer axis)&amp;lt;ref name=&amp;quot;PMID: 25972533&amp;quot;&amp;gt;PMID: 25972533&amp;lt;/ref&amp;gt;. The method used to determine this structure was [http://en.wikipedia.org/wiki/X-ray_crystallography X-ray diffraction]&lt;br /&gt;
===LAMP1 Binding Site===&lt;br /&gt;
The primary cellular receptor of LASV is α-dystroglycan (α-DG)&amp;lt;ref name=&amp;quot;PMID: 9851928&amp;quot;&amp;gt;PMID: 9851928&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 15857984&amp;quot;&amp;gt;PMID: 15857984&amp;lt;/ref&amp;gt;, which is recognized by a trimeric class 1 viral GPC (spike complex) on the viral surface&amp;lt;ref name=&amp;quot;PMID: 16731928&amp;quot;&amp;gt;PMID: 16731928&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 26849049&amp;quot;&amp;gt;PMID: 26849049&amp;lt;/ref&amp;gt;. Following successful attachment to α-DG on cells, LASV is internalized via [http://en.wikipedia.org/wiki/Pinocytosis macropinocytosis]&amp;lt;ref name=&amp;quot;PMID: 27147735&amp;quot;&amp;gt;PMID: 27147735&amp;lt;/ref&amp;gt;, and the GPC facilitates membrane fusion at the acidic environment of a late endosomal compartment&amp;lt;ref name=&amp;quot;PMID: 16731928&amp;quot;&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 21931550&amp;quot;&amp;gt;PMID: 21931550 &amp;lt;/ref&amp;gt;. Recent studies have shown that successful infection by LASV requires it to switch in a pH-dependent manner from α-DG to LAMP1&amp;lt;ref name=&amp;quot;PMID: 27605678&amp;quot; /&amp;gt;&amp;lt;ref name=&amp;quot;PMID:24970085&amp;quot;&amp;gt;PMID:24970085&amp;lt;/ref&amp;gt;. Binding of the LAMP1 endosomal compartment triggers the spikes. &lt;br /&gt;
=== Histidine Triad===&lt;br /&gt;
Included in this structure is a unique triad of histidines that is highly conserved among OW arenaviruses. Located on the β-sheet face of GP1,  the histidine triad is a structural element that directly interacts with LAMP1 and helps stabilize a LAMP1-&amp;quot;compatible&amp;quot; conformation by providing a molecular mechanism for the pH-dependent receptor switching&amp;lt;ref name=&amp;quot;PMID: 25972533&amp;quot; /&amp;gt;. The histidine triad is critical in forming a binding site for LAMP1&amp;lt;ref name=&amp;quot;PMID: 28448640&amp;quot;&amp;gt;PMID: 28448640 &amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 27605678&amp;quot;&amp;gt;PMID: 27605678 &amp;lt;/ref&amp;gt;.&lt;br /&gt;
==Resources==&lt;br /&gt;
For more information on this protein structure visit the following sites: [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4zjf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4zjf OCA], [http://pdbe.org/4zjf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4zjf RCSB], [http://www.ebi.ac.uk/pdbsum/4zjf PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4zjf ProSAT]&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
== References ==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;br /&gt;
[[Category: Cohen, N]]&lt;br /&gt;
[[Category: Cohen-Dvashi, H]]&lt;br /&gt;
[[Category: Diskin, R]]&lt;br /&gt;
[[Category: Israeli, H]]&lt;br /&gt;
[[Category: Arenavirus]]&lt;br /&gt;
[[Category: Glycoprotein]]&lt;br /&gt;
[[Category: Lassa]]&lt;br /&gt;
[[Category: LASV]]&lt;br /&gt;
[[Category: Receptor binding]]&lt;br /&gt;
[[Category: Viral protein]]&lt;br /&gt;
[[Category: 4zjf]]&lt;br /&gt;
[[Category: GP1]]&lt;/div&gt;</summary>
		<author><name>Rebecca Holstein</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Elizeu/sandbox/citocromo_c&amp;diff=2757040</id>
		<title>Elizeu/sandbox/citocromo c</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Elizeu/sandbox/citocromo_c&amp;diff=2757040"/>
		<updated>2017-08-07T09:39:08Z</updated>

		<summary type="html">&lt;p&gt;Rebecca Holstein: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;==Importance==&lt;br /&gt;
Lassa virus (LASV), an Old World (OW) [http://en.wikipedia.org/wiki/Arenavirus arenavirus], is a notorious disease-causing agent primarily in West Africa that is able to spread from rodents to humans. This deadly pathogen causes severe viral hemorrhagic fevers and significant mortality. So far, there are no available vaccines for LASV, and only one successful vaccine against another virus found in the &#039;&#039;Arenaviridae&#039;&#039; family: Junin virus&amp;lt;ref name=&amp;quot;PMID: 9466512&amp;quot;&amp;gt;PMID: 9466512 &amp;lt;/ref&amp;gt;. Structural data at atomic resolution for viral proteins are laying the foundation for better understanding both the biology behind viral proteins and ways to combat against them. Determining the structure of the complete trimeric glycoprotein complex (GPC), composed of GP1, GP2, and SSP (stable signal peptide), will pave the path towards a future discovery of novel antiviral drugs. This is the first representative structure for OW arenaviruses. This structure reveals the overall architecture of GP1 domains from OW arenaviruses and important information relating to the mechanisms for pH switching and the binding of LASV to [[LAMP1]] (Lysosome-associated membrane glycoprotein), a recently identified host receptor that is critical for successful infection. In addition, structural analysis suggests two novel immune evasion mechanisms that LASV may utilize to escape antibody-based immune response.&lt;br /&gt;
== Function ==&lt;br /&gt;
&#039;&#039;&#039;GP1&#039;&#039;&#039; (Glycoprotein 1) is the receptor binding domain of LASV that mediates receptor recognition. Research thus far indicates that GP1 from LASV may undergo irreversible conformational changes that could serve as an immunological decoy mechanism. Arenaviruses utilize various cell surface proteins as their cellular receptors for recognizing and attaching to target cells. New World (NW) arenaviruses that belong to clades A and B use transferrin receptor 1 (TfR1)&amp;lt;ref name=&amp;quot;PMID:17287727&amp;quot;&amp;gt;PMID:17287727&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID:24920811&amp;quot;&amp;gt;PMID:24920811&amp;lt;/ref&amp;gt;, whereas OW arenaviruses, as well as clade C NW arenaviruses, use α-dystroglycan (α-DG) &amp;lt;ref name=&amp;quot;PMID:9851928&amp;quot;&amp;gt;PMID:9851928&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID:15857984&amp;quot;&amp;gt;PMID:15857984&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID:11967329&amp;quot;&amp;gt;PMID:11967329&amp;lt;/ref&amp;gt;. A trimeric class 1 viral glycoprotein complex (the spike complex) recognizes the cellular receptors and mediates membrane fusion upon exposure to low pH at the lysosome &amp;lt;ref name=&amp;quot;PMID:16731928&amp;quot;&amp;gt;PMID:16731928&amp;lt;/ref&amp;gt;. The spike complex is expressed as a glycoprotein precursor that is cleaved into three segments by a signal peptidase and SKI-1/S1P protease&amp;lt;ref name=&amp;quot;PMID:21612810&amp;quot;&amp;gt;PMID:21612810&amp;lt;/ref&amp;gt;. The functional spike complex consists of GP1, a membrane-anchored fusion protein (GP2), and a unique structured SSP &amp;lt;ref name=&amp;quot;PMID:23202458&amp;quot;&amp;gt;PMID:23202458&amp;lt;/ref&amp;gt;.                                                                                                                                                                                                                                                                                                                                                                                         &lt;br /&gt;
==Structural Highlights==&lt;br /&gt;
GP1 of LASV is a single chain structure with attached NAG glycans. The overall architecture of GP1 features a central β-sheet and two distinct halves: a glycosylated half containing the receptor-binding site that is made mostly by the central β-sheet and surrounding loops and a half that contains mostly helices and most likely faces the trimer axis)&amp;lt;ref name=&amp;quot;PMID: 25972533&amp;quot;&amp;gt;PMID: 25972533&amp;lt;/ref&amp;gt;. The method used to determine this structure was [http://en.wikipedia.org/wiki/X-ray_crystallography X-ray diffraction]&lt;br /&gt;
===LAMP1 Binding Site===&lt;br /&gt;
The primary cellular receptor of LASV is α-dystroglycan (α-DG)&amp;lt;ref name=&amp;quot;PMID: 9851928&amp;quot;&amp;gt;PMID: 9851928&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 15857984&amp;quot;&amp;gt;PMID: 15857984&amp;lt;/ref&amp;gt;, which is recognized by a trimeric class 1 viral GPC (spike complex) on the viral surface&amp;lt;ref name=&amp;quot;PMID: 16731928&amp;quot;&amp;gt;PMID: 16731928&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 26849049&amp;quot;&amp;gt;PMID: 26849049&amp;lt;/ref&amp;gt;. Following successful attachment to α-DG on cells, LASV is internalized via [http://en.wikipedia.org/wiki/Pinocytosis macropinocytosis]&amp;lt;ref name=&amp;quot;PMID: 27147735&amp;quot;&amp;gt;PMID: 27147735&amp;lt;/ref&amp;gt;, and the GPC facilitates membrane fusion at the acidic environment of a late endosomal compartment&amp;lt;ref name=&amp;quot;PMID: 16731928&amp;quot;&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 21931550&amp;quot;&amp;gt;PMID: 21931550 &amp;lt;/ref&amp;gt;. Recent studies have shown that successful infection by LASV requires it to switch in a pH-dependent manner from α-DG to LAMP1&amp;lt;ref name=&amp;quot;PMID: 27605678&amp;quot; /&amp;gt;&amp;lt;ref name=&amp;quot;PMID:24970085&amp;quot;&amp;gt;PMID:24970085&amp;lt;/ref&amp;gt;. Binding of the LAMP1 endosomal compartment triggers the spikes. &lt;br /&gt;
=== Histidine Triad===&lt;br /&gt;
Included in this structure is a unique triad of histidines that is highly conserved among OW arenaviruses. Located on the β-sheet face of GP1,  the histidine triad is a structural element that directly interacts with LAMP1 and helps stabilize a LAMP1-&amp;quot;compatible&amp;quot; conformation by providing a molecular mechanism for the pH-dependent receptor switching&amp;lt;ref name=&amp;quot;PMID: 25972533&amp;quot; /&amp;gt;. The histidine triad is critical in forming a binding site for LAMP1&amp;lt;ref name=&amp;quot;PMID: 28448640&amp;quot;&amp;gt;PMID: 28448640 &amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 27605678&amp;quot;&amp;gt;PMID: 27605678 &amp;lt;/ref&amp;gt;.&lt;br /&gt;
==Resources==&lt;br /&gt;
For more information on this protein structure visit the following sites: [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4zjf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4zjf OCA], [http://pdbe.org/4zjf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4zjf RCSB], [http://www.ebi.ac.uk/pdbsum/4zjf PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4zjf ProSAT]&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
== References ==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;br /&gt;
[[Category: Cohen, N]]&lt;br /&gt;
[[Category: Cohen-Dvashi, H]]&lt;br /&gt;
[[Category: Diskin, R]]&lt;br /&gt;
[[Category: Israeli, H]]&lt;br /&gt;
[[Category: Arenavirus]]&lt;br /&gt;
[[Category: Glycoprotein]]&lt;br /&gt;
[[Category: Lassa]]&lt;br /&gt;
[[Category: LASV]]&lt;br /&gt;
[[Category: Receptor binding]]&lt;br /&gt;
[[Category: Viral protein]]&lt;br /&gt;
[[Category: 4zjf]]&lt;br /&gt;
[[Category: GP1]]&lt;/div&gt;</summary>
		<author><name>Rebecca Holstein</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Elizeu/sandbox/citocromo_c&amp;diff=2757039</id>
		<title>Elizeu/sandbox/citocromo c</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Elizeu/sandbox/citocromo_c&amp;diff=2757039"/>
		<updated>2017-08-07T09:37:53Z</updated>

		<summary type="html">&lt;p&gt;Rebecca Holstein: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;Structure load=&#039;4zjf&#039; size=&#039;350&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;GP1 of Lassa Virus&#039; scene=&#039;Insert optional scene name here&#039; /&amp;gt;&lt;br /&gt;
==Importance==&lt;br /&gt;
Lassa virus (LASV), an Old World (OW) [http://en.wikipedia.org/wiki/Arenavirus arenavirus], is a notorious disease-causing agent primarily in West Africa that is able to spread from rodents to humans. This deadly pathogen causes severe viral hemorrhagic fevers and significant mortality. So far, there are no available vaccines for LASV, and only one successful vaccine against another virus found in the &#039;&#039;Arenaviridae&#039;&#039; family: Junin virus&amp;lt;ref name=&amp;quot;PMID: 9466512&amp;quot;&amp;gt;PMID: 9466512 &amp;lt;/ref&amp;gt;. Structural data at atomic resolution for viral proteins are laying the foundation for better understanding both the biology behind viral proteins and ways to combat against them. Determining the structure of the complete trimeric glycoprotein complex (GPC), composed of GP1, GP2, and SSP (stable signal peptide), will pave the path towards a future discovery of novel antiviral drugs. This is the first representative structure for OW arenaviruses. This structure reveals the overall architecture of GP1 domains from OW arenaviruses and important information relating to the mechanisms for pH switching and the binding of LASV to [[LAMP1]] (Lysosome-associated membrane glycoprotein), a recently identified host receptor that is critical for successful infection. In addition, structural analysis suggests two novel immune evasion mechanisms that LASV may utilize to escape antibody-based immune response.&lt;br /&gt;
== Function ==&lt;br /&gt;
&#039;&#039;&#039;GP1&#039;&#039;&#039; (Glycoprotein 1) is the receptor binding domain of LASV that mediates receptor recognition. Research thus far indicates that GP1 from LASV may undergo irreversible conformational changes that could serve as an immunological decoy mechanism. Arenaviruses utilize various cell surface proteins as their cellular receptors for recognizing and attaching to target cells. New World (NW) arenaviruses that belong to clades A and B use transferrin receptor 1 (TfR1)&amp;lt;ref name=&amp;quot;PMID:17287727&amp;quot;&amp;gt;PMID:17287727&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID:24920811&amp;quot;&amp;gt;PMID:24920811&amp;lt;/ref&amp;gt;, whereas OW arenaviruses, as well as clade C NW arenaviruses, use α-dystroglycan (α-DG) &amp;lt;ref name=&amp;quot;PMID:9851928&amp;quot;&amp;gt;PMID:9851928&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID:15857984&amp;quot;&amp;gt;PMID:15857984&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID:11967329&amp;quot;&amp;gt;PMID:11967329&amp;lt;/ref&amp;gt;. A trimeric class 1 viral glycoprotein complex (the spike complex) recognizes the cellular receptors and mediates membrane fusion upon exposure to low pH at the lysosome &amp;lt;ref name=&amp;quot;PMID:16731928&amp;quot;&amp;gt;PMID:16731928&amp;lt;/ref&amp;gt;. The spike complex is expressed as a glycoprotein precursor that is cleaved into three segments by a signal peptidase and SKI-1/S1P protease&amp;lt;ref name=&amp;quot;PMID:21612810&amp;quot;&amp;gt;PMID:21612810&amp;lt;/ref&amp;gt;. The functional spike complex consists of GP1, a membrane-anchored fusion protein (GP2), and a unique structured SSP &amp;lt;ref name=&amp;quot;PMID:23202458&amp;quot;&amp;gt;PMID:23202458&amp;lt;/ref&amp;gt;.                                                                                                                                                                                                                                                                                                                                                                                         &lt;br /&gt;
==Structural Highlights==&lt;br /&gt;
GP1 of LASV is a single chain structure with attached NAG glycans. The overall architecture of GP1 features a central β-sheet and two distinct halves: a glycosylated half containing the receptor-binding site that is made mostly by the central β-sheet and surrounding loops and a half that contains mostly helices and most likely faces the trimer axis)&amp;lt;ref name=&amp;quot;PMID: 25972533&amp;quot;&amp;gt;PMID: 25972533&amp;lt;/ref&amp;gt;. The method used to determine this structure was [http://en.wikipedia.org/wiki/X-ray_crystallography X-ray diffraction]&lt;br /&gt;
===LAMP1 Binding Site===&lt;br /&gt;
The primary cellular receptor of LASV is α-dystroglycan (α-DG)&amp;lt;ref name=&amp;quot;PMID: 9851928&amp;quot;&amp;gt;PMID: 9851928&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 15857984&amp;quot;&amp;gt;PMID: 15857984&amp;lt;/ref&amp;gt;, which is recognized by a trimeric class 1 viral GPC (spike complex) on the viral surface&amp;lt;ref name=&amp;quot;PMID: 16731928&amp;quot;&amp;gt;PMID: 16731928&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 26849049&amp;quot;&amp;gt;PMID: 26849049&amp;lt;/ref&amp;gt;. Following successful attachment to α-DG on cells, LASV is internalized via [http://en.wikipedia.org/wiki/Pinocytosis macropinocytosis]&amp;lt;ref name=&amp;quot;PMID: 27147735&amp;quot;&amp;gt;PMID: 27147735&amp;lt;/ref&amp;gt;, and the GPC facilitates membrane fusion at the acidic environment of a late endosomal compartment&amp;lt;ref name=&amp;quot;PMID: 16731928&amp;quot;&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 21931550&amp;quot;&amp;gt;PMID: 21931550 &amp;lt;/ref&amp;gt;. Recent studies have shown that successful infection by LASV requires it to switch in a pH-dependent manner from α-DG to LAMP1&amp;lt;ref name=&amp;quot;PMID: 27605678&amp;quot; /&amp;gt;&amp;lt;ref name=&amp;quot;PMID:24970085&amp;quot;&amp;gt;PMID:24970085&amp;lt;/ref&amp;gt;. Binding of the LAMP1 endosomal compartment triggers the spikes. &lt;br /&gt;
=== Histidine Triad===&lt;br /&gt;
Included in this structure is a unique triad of histidines that is highly conserved among OW arenaviruses. Located on the β-sheet face of GP1,  the &amp;lt;scene name=&#039;55/559112/4zjf/3&#039;&amp;gt;histidine triad&amp;lt;/scene&amp;gt; is a structural element that directly interacts with LAMP1 and helps stabilize a LAMP1-&amp;quot;compatible&amp;quot; conformation by providing a molecular mechanism for the pH-dependent receptor switching&amp;lt;ref name=&amp;quot;PMID: 25972533&amp;quot; /&amp;gt;. The histidine triad is critical in forming a binding site for LAMP1&amp;lt;ref name=&amp;quot;PMID: 28448640&amp;quot;&amp;gt;PMID: 28448640 &amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 27605678&amp;quot;&amp;gt;PMID: 27605678 &amp;lt;/ref&amp;gt;.&lt;br /&gt;
==Resources==&lt;br /&gt;
For more information on this protein structure visit the following sites: [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4zjf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4zjf OCA], [http://pdbe.org/4zjf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4zjf RCSB], [http://www.ebi.ac.uk/pdbsum/4zjf PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4zjf ProSAT]&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
== References ==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;br /&gt;
[[Category: Cohen, N]]&lt;br /&gt;
[[Category: Cohen-Dvashi, H]]&lt;br /&gt;
[[Category: Diskin, R]]&lt;br /&gt;
[[Category: Israeli, H]]&lt;br /&gt;
[[Category: Arenavirus]]&lt;br /&gt;
[[Category: Glycoprotein]]&lt;br /&gt;
[[Category: Lassa]]&lt;br /&gt;
[[Category: LASV]]&lt;br /&gt;
[[Category: Receptor binding]]&lt;br /&gt;
[[Category: Viral protein]]&lt;br /&gt;
[[Category: 4zjf]]&lt;br /&gt;
[[Category: GP1]]&lt;/div&gt;</summary>
		<author><name>Rebecca Holstein</name></author>
	</entry>
	<entry>
		<id>https://proteopedia.org/index.php?title=Elizeu/sandbox/citocromo_c&amp;diff=2757036</id>
		<title>Elizeu/sandbox/citocromo c</title>
		<link rel="alternate" type="text/html" href="https://proteopedia.org/index.php?title=Elizeu/sandbox/citocromo_c&amp;diff=2757036"/>
		<updated>2017-08-07T09:26:17Z</updated>

		<summary type="html">&lt;p&gt;Rebecca Holstein: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&amp;lt;Structure load=&#039;4zjf&#039; size=&#039;350&#039; frame=&#039;true&#039; align=&#039;right&#039; caption=&#039;GP1 of Lassa Virus&#039; scene=&#039;Insert optional scene name here&#039; /&amp;gt;&lt;br /&gt;
==Importance==&lt;br /&gt;
Lassa virus (LASV), an Old World (OW) [http://en.wikipedia.org/wiki/Arenavirus arenavirus], is a notorious disease-causing agent primarily in West Africa that is able to spread from rodents to humans. This deadly pathogen causes severe viral hemorrhagic fevers and significant mortality. So far, there are no available vaccines for LASV, and only one successful vaccine against another virus found in the &#039;&#039;Arenaviridae&#039;&#039; family: Junin virus&amp;lt;ref name=&amp;quot;PMID: 9466512&amp;quot;&amp;gt;PMID: 9466512 &amp;lt;/ref&amp;gt;. Structural data at atomic resolution for viral proteins are laying the foundation for better understanding both the biology behind viral proteins and ways to combat against them. Determining the structure of the complete trimeric glycoprotein complex (GPC), composed of GP1, GP2, and SSP (stable signal peptide), will pave the path towards a future discovery of novel antiviral drugs. This is the first representative structure for OW arenaviruses. This structure reveals the overall architecture of GP1 domains from OW arenaviruses and important information relating to the mechanisms for pH switching and the binding of LASV to [[LAMP1]] (Lysosome-associated membrane glycoprotein), a recently identified host receptor that is critical for successful infection. In addition, structural analysis suggests two novel immune evasion mechanisms that LASV may utilize to escape antibody-based immune response.&lt;br /&gt;
== Function ==&lt;br /&gt;
&#039;&#039;&#039;GP1&#039;&#039;&#039; (Glycoprotein 1) is the receptor binding domain of LASV that mediates receptor recognition. Research thus far indicates that GP1 from LASV may undergo irreversible conformational changes that could serve as an immunological decoy mechanism. Arenaviruses utilize various cell surface proteins as their cellular receptors for recognizing and attaching to target cells. New World (NW) arenaviruses that belong to clades A and B use transferrin receptor 1 (TfR1)&amp;lt;ref name=&amp;quot;PMID:17287727&amp;quot;&amp;gt;PMID:17287727&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID:24920811&amp;quot;&amp;gt;PMID:24920811&amp;lt;/ref&amp;gt;, whereas OW arenaviruses, as well as clade C NW arenaviruses, use α-dystroglycan (α-DG) &amp;lt;ref name=&amp;quot;PMID:9851928&amp;quot;&amp;gt;PMID:9851928&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID:15857984&amp;quot;&amp;gt;PMID:15857984&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID:11967329&amp;quot;&amp;gt;PMID:11967329&amp;lt;/ref&amp;gt;. A trimeric class 1 viral glycoprotein complex (the spike complex) recognizes the cellular receptors and mediates membrane fusion upon exposure to low pH at the lysosome &amp;lt;ref name=&amp;quot;PMID:16731928&amp;quot;&amp;gt;PMID:16731928&amp;lt;/ref&amp;gt;. The spike complex is expressed as a glycoprotein precursor that is cleaved into three segments by a signal peptidase and SKI-1/S1P protease&amp;lt;ref name=&amp;quot;PMID:21612810&amp;quot;&amp;gt;PMID:21612810&amp;lt;/ref&amp;gt;. The functional spike complex consists of GP1, a membrane-anchored fusion protein (GP2), and a unique structured SSP &amp;lt;ref name=&amp;quot;PMID:23202458&amp;quot;&amp;gt;PMID:23202458&amp;lt;/ref&amp;gt;.                                                                                                                                                                                                                                                                                                                                                                                         &lt;br /&gt;
==Structural Highlights==&lt;br /&gt;
GP1 of LASV is a single chain structure with attached NAG glycans. The overall architecture of GP1 features a central β-sheet and two distinct halves: a glycosylated half containing the receptor-binding site that is made mostly by the central β-sheet and surrounding loops and a half that contains mostly helices and most likely faces the trimer axis)&amp;lt;ref name=&amp;quot;PMID: 25972533&amp;quot;&amp;gt;PMID: 25972533&amp;lt;/ref&amp;gt;. The method used to determine this structure was [http://en.wikipedia.org/wiki/X-ray_crystallography X-ray diffraction]&lt;br /&gt;
===LAMP1 Binding Site===&lt;br /&gt;
The primary cellular receptor of LASV is α-dystroglycan (α-DG)&amp;lt;ref name=&amp;quot;PMID: 9851928&amp;quot;&amp;gt;PMID: 9851928&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 15857984&amp;quot;&amp;gt;PMID: 15857984&amp;lt;/ref&amp;gt;, which is recognized by a trimeric class 1 viral GPC (spike complex) on the viral surface&amp;lt;ref name=&amp;quot;PMID: 16731928&amp;quot;&amp;gt;PMID: 16731928&amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 26849049&amp;quot;&amp;gt;PMID: 26849049&amp;lt;/ref&amp;gt;. Following successful attachment to α-DG on cells, LASV is internalized via [http://en.wikipedia.org/wiki/Pinocytosis macropinocytosis]&amp;lt;ref name=&amp;quot;PMID: 27147735&amp;quot;&amp;gt;PMID: 27147735&amp;lt;/ref&amp;gt;, and the GPC facilitates membrane fusion at the acidic environment of a late endosomal compartment&amp;lt;ref name=&amp;quot;PMID: 16731928&amp;quot;&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 21931550&amp;quot;&amp;gt;PMID: 21931550 &amp;lt;/ref&amp;gt;. Recent studies have shown that successful infection by LASV requires it to switch in a pH-dependent manner from α-DG to LAMP1&amp;lt;ref name=&amp;quot;PMID: 27605678&amp;quot; /&amp;gt;&amp;lt;ref name=&amp;quot;PMID:24970085&amp;quot;&amp;gt;PMID:24970085&amp;lt;/ref&amp;gt;. Binding of the LAMP1 endosomal compartment triggers the spikes. &lt;br /&gt;
=== Histidine Triad===&lt;br /&gt;
Included in this structure is a unique triad of histidines that is highly conserved among OW arenaviruses. Located on the β-sheet face of GP1,  the histidine triad is a structural element that directly interacts with LAMP1 and helps stabilize a LAMP1-&amp;quot;compatible&amp;quot; conformation by providing a molecular mechanism for the pH-dependent receptor switching&amp;lt;ref name=&amp;quot;PMID: 25972533&amp;quot; /&amp;gt;. The histidine triad is critical in forming a binding site for LAMP1&amp;lt;ref name=&amp;quot;PMID: 28448640&amp;quot;&amp;gt;PMID: 28448640 &amp;lt;/ref&amp;gt;&amp;lt;ref name=&amp;quot;PMID: 27605678&amp;quot;&amp;gt;PMID: 27605678 &amp;lt;/ref&amp;gt;.&lt;br /&gt;
==Resources==&lt;br /&gt;
For more information on this protein structure visit the following sites: [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4zjf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4zjf OCA], [http://pdbe.org/4zjf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4zjf RCSB], [http://www.ebi.ac.uk/pdbsum/4zjf PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4zjf ProSAT]&lt;br /&gt;
&amp;lt;/StructureSection&amp;gt;&lt;br /&gt;
== References ==&lt;br /&gt;
&amp;lt;references/&amp;gt;&lt;br /&gt;
[[Category: Cohen, N]]&lt;br /&gt;
[[Category: Cohen-Dvashi, H]]&lt;br /&gt;
[[Category: Diskin, R]]&lt;br /&gt;
[[Category: Israeli, H]]&lt;br /&gt;
[[Category: Arenavirus]]&lt;br /&gt;
[[Category: Glycoprotein]]&lt;br /&gt;
[[Category: Lassa]]&lt;br /&gt;
[[Category: LASV]]&lt;br /&gt;
[[Category: Receptor binding]]&lt;br /&gt;
[[Category: Viral protein]]&lt;br /&gt;
[[Category: 4zjf]]&lt;br /&gt;
[[Category: GP1]]&lt;/div&gt;</summary>
		<author><name>Rebecca Holstein</name></author>
	</entry>
</feed>