Proteopedia - User contributions [en]

Shira sandbox

2015-06-24T13:13:01Z

Shira Weingarten-Gabbay:

==Test Shira==
<StructureSection load='1TUP' size='340' side='right' caption='title' scene=''>
This is a default text for your page '''Shira sandbox'''. Click above on '''edit this page''' to modify. Be careful with the < and > signs.
You may include any references to papers as in: the use of JSmol in Proteopedia <ref>DOI 10.1002/ijch.201300024</ref> or to the article describing Jmol <ref>PMID:21638687</ref> to the rescue.

== Function ==

== Disease ==

== Relevance ==

== Structural highlights ==

This is a sample scene created with SAT to <scene name="/12/3456/Sample/1">color</scene> by Group, and another to make <scene name="/12/3456/Sample/2">a transparent representation</scene> of the protein. You can make your own scenes on SAT starting from scratch or loading and editing one of these sample scenes.

<scene name='70/702430/Test/2'>TextToBeDisplayed</scene>

</StructureSection>
== References ==
<references/>

Shira sandbox

2015-06-24T13:06:06Z

Shira Weingarten-Gabbay:

==Test Shira==
<StructureSection load='1TUP' size='340' side='right' caption='title' scene=''>
This is a default text for your page '''Shira sandbox'''. Click above on '''edit this page''' to modify. Be careful with the < and > signs.
You may include any references to papers as in: the use of JSmol in Proteopedia <ref>DOI 10.1002/ijch.201300024</ref> or to the article describing Jmol <ref>PMID:21638687</ref> to the rescue.

== Function ==

== Disease ==

== Relevance ==

== Structural highlights ==

This is a sample scene created with SAT to <scene name="/12/3456/Sample/1">color</scene> by Group, and another to make <scene name="/12/3456/Sample/2">a transparent representation</scene> of the protein. You can make your own scenes on SAT starting from scratch or loading and editing one of these sample scenes.

<scene name='70/702430/Test/1'>TextToBeDisplayed</scene>

</StructureSection>
== References ==
<references/>

Shira sandbox

2015-06-02T11:06:08Z

Shira Weingarten-Gabbay:

Shira sandbox

2015-05-19T10:25:50Z

Shira Weingarten-Gabbay:

==Test Shira==
<StructureSection load='3w14' size='340' side='right' caption='title' scene=''>
This is a default text for your page '''Shira sandbox'''. Click above on '''edit this page''' to modify. Be careful with the < and > signs.
You may include any references to papers as in: the use of JSmol in Proteopedia <ref>DOI 10.1002/ijch.201300024</ref> or to the article describing Jmol <ref>PMID:21638687</ref> to the rescue.

== Function ==

== Disease ==

== Relevance ==

== Structural highlights ==

This is a sample scene created with SAT to <scene name="/12/3456/Sample/1">color</scene> by Group, and another to make <scene name="/12/3456/Sample/2">a transparent representation</scene> of the protein. You can make your own scenes on SAT starting from scratch or loading and editing one of these sample scenes.

</StructureSection>
== References ==
<references/>

Shira sandbox

2015-05-19T10:24:43Z

Shira Weingarten-Gabbay: New page: ==Your Heading Here (maybe something like 'Structure')== <StructureSection load='1stp' size='340' side='right' caption='Caption for this structure' scene=''> This is a default text for you...

==Your Heading Here (maybe something like 'Structure')==
<StructureSection load='1stp' size='340' side='right' caption='Caption for this structure' scene=''>
This is a default text for your page '''Shira sandbox'''. Click above on '''edit this page''' to modify. Be careful with the < and > signs.
You may include any references to papers as in: the use of JSmol in Proteopedia <ref>DOI 10.1002/ijch.201300024</ref> or to the article describing Jmol <ref>PMID:21638687</ref> to the rescue.

== Function ==

== Disease ==

== Relevance ==

== Structural highlights ==

This is a sample scene created with SAT to <scene name="/12/3456/Sample/1">color</scene> by Group, and another to make <scene name="/12/3456/Sample/2">a transparent representation</scene> of the protein. You can make your own scenes on SAT starting from scratch or loading and editing one of these sample scenes.

</StructureSection>
== References ==
<references/>

Elizeu/sandbox/citocromo c

2015-05-19T09:52:12Z

Shira Weingarten-Gabbay:

== Example page for Green fluorescent protein ("GFP") ==
<StructureSection load='1ema' size='300' frame='true' side='right' caption='GFP ([[1ema]])' scene=''>
[[Image:1ema.gif|thumb|left|450px|Green fluorescent protein (1ema)]]

== Introduction ==

Green fluorescent protein ('''GFP'''), originally isolated from the jellyfish Aequorea victoria (PDB entry [[1ema]]), fluorsceses green (509nm) when exposed to blue light (395nm and 475nm). It is one of the most important proteins used in biological research because it can be used to tag otherwise invisible gene products of interest and thus observe their existence, location and movement.

== Exploring the Structure ==
GFP is a beta barrel protein with 11 beta sheets. It is a 26.9kDa protein made up of 238 amino acids. The
<scene name='55/559112/1ema_chromophore/1'>chromophore</scene>, responsible for the fluorescent properties of the protein, is buried inside the beta barrel as part of the central alpha helix passing through the barrel. The chromophore forms via spontaneous cyclization and oxidation of three residues in the central alpha helix: -Thr65 (or Ser65)-Tyr66-Gly67. This cyclization and oxidation creates the chromophore's five-membered ring via a new bond between the threonine and the glycine residues.<ref>PMID:8703075</ref>

</StructureSection>

==References==
<references/>

Elizeu/sandbox/citocromo c

2015-05-19T09:51:49Z

Shira Weingarten-Gabbay: