8oqx | pdb_00008oqx

Crystal structure of Tannerella forsythia MurNAc kinase MurK with a phosphate analogue

spinqualitylabelsall models 8oqx, resolution 2.12Å Show:Asymmetric Unit Biological Assembly Drag the structure with the mouse to rotate   Export Animated Image   Print3D Structural highlights 8oqx is a 2 chain structure with sequence from Tannerella forsythia. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance. Method: X-ray diffraction, Resolution 2.12Å Ligands: ACP, EDO, MG, PEG, SO4, TAM Resources: FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT Function G8UQH9_TANFA Publication Abstract from PubMed The bacterial cell wall consists of a three-dimensional peptidoglycan layer, composed of peptides linked to the sugars N-acetylmuramic acid (MurNAc) and GlcNAc. Unlike other bacteria, the pathogenic Tannerella forsythia, a member of the red complex group of bacteria associated with the late stages of periodontitis, lacks biosynthetic pathways for MurNAc production and therefore obtains MurNAc from the environment. Sugar kinases play a crucial role in the MurNAc recycling process, activating the sugar molecules by phosphorylation. In this study, we present the first crystal structures of a MurNAc kinase, called murein sugar kinase (MurK), in its unbound state as well as in complexes with the ATP analogue beta-gamma-methylene adenosine triphosphate (AMP-PCP) and with MurNAc. We also determined the crystal structures of K1058, a paralogous MurNAc kinase of T. forsythia, in its unbound state and in complex with MurNAc. We identified the active site and residues crucial for MurNAc specificity as the less bulky side chains of S133, P134, and L135, which enlarge the binding cavity for the lactyl ether group, unlike the glutamate or histidine residues present in structural homologues. In establishing the apparent kinetic parameters for both enzymes, we showed a comparable affinity for MurNAc (K(m) 180 muM and 30 muM for MurK and K1058, respectively), with MurK being over two hundred times faster than K1058 (V(max) 80 and 0.34 mumol min(-1) mg(-1), respectively). These data might support a structure-guided approach to development of inhibitory MurNAc analogues for pathogen MurK enzymes. N-acetylmuramic acid recognition by MurK kinase from the MurNAc auxotrophic oral pathogen Tannerella forsythia.,Stasiak AC, Gogler K, Borisova M, Fink P, Mayer C, Stehle T, Zocher G J Biol Chem. 2023 Jul 20:105076. doi: 10.1016/j.jbc.2023.105076. PMID:37481208 From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

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