View source for 1oq2


==NMR structure of hemimethylated GATC site==
<StructureSection load='1oq2' size='340' side='right'caption='[[1oq2]]' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[1oq2]] is a 2 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OQ2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1OQ2 FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=6MA:N6-METHYL-DEOXY-ADENOSINE-5-MONOPHOSPHATE'>6MA</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1oq2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1oq2 OCA], [https://pdbe.org/1oq2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1oq2 RCSB], [https://www.ebi.ac.uk/pdbsum/1oq2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1oq2 ProSAT]</span></td></tr>
</table>
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
DNA methylation occurs in most organisms from bacteria to mammals and provides a mechanism for epigenetic control of a variety of cellular processes. In Escherichia coli, most of the N6 positions in adenines found in the sequence GATC are methylated by DNA adenine methyltransferase. After DNA replication, the GATC sites exist transiently in the hemimethylated state, and the specific recognition of these hemimethylated GATC sites is essential for several processes, including sequestration of the site of replication initiation by the SeqA protein, strand discrimination in DNA mismatch repair by the MutH protein, and transcription of several genes. Here, we characterize the solution structure and dynamics of two dodecamer DNA duplexes that each contains a single GATC site in either unmethylated or hemimethylated state. We found that the N6-methylated adenine of a hemimethylated GATC site undergoes a slow trans-cis interconversion. The release of a tightly bound cation from hemimethylated DNA explains the instability of this structure. In addition, quantitative structural analysis revealed that hemimethylated DNA has unusual backbone structures and a remarkably narrow major groove. These dynamic and structural features provide insights into the specific recognition of hemimethylated GATC sites by the SeqA protein.

Structure and dynamics of hemimethylated GATC sites: implications for DNA-SeqA recognition.,Bae SH, Cheong HK, Cheong C, Kang S, Hwang DS, Choi BS J Biol Chem. 2003 Nov 14;278(46):45987-93. Epub 2003 Aug 27. PMID:12944412<ref>PMID:12944412</ref>

From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
<div class="pdbe-citations 1oq2" style="background-color:#fffaf0;"></div>
== References ==
<references/>
__TOC__
</StructureSection>
[[Category: Large Structures]]
[[Category: Bae S-H]]
[[Category: Cheong C]]
[[Category: Cheong H-K]]
[[Category: Choi B-S]]
[[Category: Hwang DS]]
[[Category: Kang S]]