View source for 1p4w


==Solution structure of the DNA-binding domain of the Erwinia amylovora RcsB protein==
<StructureSection load='1p4w' size='340' side='right'caption='[[1p4w]]' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[1p4w]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Erwinia_amylovora Erwinia amylovora]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1P4W OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1P4W FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1p4w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1p4w OCA], [https://pdbe.org/1p4w PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1p4w RCSB], [https://www.ebi.ac.uk/pdbsum/1p4w PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1p4w ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/P96320_ERWAM P96320_ERWAM] 
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/p4/1p4w_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1p4w ConSurf].
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== Publication Abstract from PubMed ==
The transcriptional regulator RcsB interacts with other coactivators to control the expression of biosynthetic operons in enterobacteria. While in a heterodimer complex with the regulator RcsA the RcsAB box consensus is recognized, DNA binding sites for RcsB without RcsA have also been identified. The conformation of RcsB might therefore be modulated upon interaction with various coactivators, resulting in the recognition of different DNA targets. We report the solution structure of the C-terminal DNA-binding domain of the RcsB protein from Erwinia amylovora spanning amino acid residues 129-215 solved by heteronuclear magnetic resonance (NMR) spectroscopy. The C-terminal domain is composed of four alpha-helices where two central helices form a helix-turn-helix motif similar to the structures of the regulatory proteins GerE, NarL, and TraR. Amino acid residues involved in the RcsA independent DNA binding of RcsB were identified by titration studies with a RcsAB box consensus fragment. Data obtained from NMR spectroscopy together with surface plasmon resonance measurements demonstrate that the RcsAB box is specifically recognized by the RcsAB heterodimer as well as by RcsB alone. However, the binding constant of RcsB alone at target promoters from Escherichia coli, E. amylovora, and Pantoea stewartii was approximately 1 order of magnitude higher compared with that of the RcsAB heterodimer. We present evidence that the obvious role of RcsA is not to alter the DNA binding specificity of RcsB but to stabilize RcsB-DNA complexes.

Structural analysis of the DNA-binding domain of the Erwinia amylovora RcsB protein and its interaction with the RcsAB box.,Pristovsek P, Sengupta K, Lohr F, Schafer B, von Trebra MW, Ruterjans H, Bernhard F J Biol Chem. 2003 May 16;278(20):17752-9. Epub 2003 Mar 5. PMID:12740396<ref>PMID:12740396</ref>

From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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<div class="pdbe-citations 1p4w" style="background-color:#fffaf0;"></div>
== References ==
<references/>
__TOC__
</StructureSection>
[[Category: Erwinia amylovora]]
[[Category: Large Structures]]
[[Category: Bernhard F]]
[[Category: Loehr F]]
[[Category: Pristovsek P]]
[[Category: Rueterjans H]]
[[Category: Schaefer B]]
[[Category: Sengupta K]]
[[Category: Wehland von Trebra M]]