View source for 1pdi


==Fitting of the C-terminal part of the short tail fibers into the cryo-EM reconstruction of T4 baseplate==
<SX load='1pdi' size='340' side='right' viewer='molstar' caption='[[1pdi]], [[Resolution|resolution]] 12.00&Aring;' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[1pdi]] is a 18 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_virus_T4 Escherichia virus T4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PDI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1PDI FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 12&#8491;</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1pdi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1pdi OCA], [https://pdbe.org/1pdi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1pdi RCSB], [https://www.ebi.ac.uk/pdbsum/1pdi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1pdi ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/FIB12_BPT4 FIB12_BPT4] Structural component of the short tail fiber. Adhesion protein that binds irreversibly to the lipopolysaccharides component (LPS) on the cell surface of Escherichia coli B strains during virus attachment. After at least three long tail fibers have bound, short tail fibers extend and bind irreversibly to the core region of the host cell LPS.<ref>PMID:12837775</ref> 
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pd/1pdi_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1pdi ConSurf].
<div style="clear:both"></div>
== References ==
<references/>
__TOC__
</SX>
[[Category: Escherichia virus T4]]
[[Category: Large Structures]]
[[Category: Arisaka F]]
[[Category: Chipman PR]]
[[Category: Kanamaru S]]
[[Category: Kostyuchenko VA]]
[[Category: Leiman PG]]
[[Category: Mesyanzhinov VV]]
[[Category: Rossmann MG]]
[[Category: Van Raaij MJ]]