View source for 2xem


==Induced-fit and allosteric effects upon polyene binding revealed by crystal structures of the Dynemicin thioesterase==
<StructureSection load='2xem' size='340' side='right'caption='[[2xem]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[2xem]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Micromonospora_chersina Micromonospora chersina]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2XEM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2XEM FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SSV:(3E,5E,7E,9E,11E,13E)-PENTADECA-3,5,7,9,11,13-HEXAEN-2-ONE'>SSV</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2xem FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2xem OCA], [https://pdbe.org/2xem PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2xem RCSB], [https://www.ebi.ac.uk/pdbsum/2xem PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2xem ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/Q84HI7_9ACTN Q84HI7_9ACTN] 
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
Dynemicins are structurally related 10-membered enediyne natural products isolated from Micromonospora chernisa with potent antitumor and antibiotic activity. The early biosynthetic steps of the enediyne moiety of dynemicins are catalyzed by an iterative polyketide synthase (DynE8) and a thioesterase (DynE7). Recent studies indicate that the function of DynE7 is to off-load the linear biosynthetic intermediate assembled on DynE8. Here, we report crystal structures of DynE7 in its free form at 2.7 A resolution and of DynE7 in complex with the DynE8-produced all-trans pentadecen-2-one at 2.1 A resolution. These crystal structures reveal that upon ligand binding, significant conformational changes throughout the substrate-binding tunnel result in an expanded tunnel that traverses an entire monomer of the tetrameric DynE7 protein. The enlarged inner segment of the channel binds the carbonyl-conjugated polyene mainly through hydrophobic interactions, whereas the putative catalytic residues are located in the outer segment of the channel. The crystallographic information reinforces an unusual catalytic mechanism that involves a strictly conserved arginine residue for this subfamily of hot-dog fold thioesterases, distinct from the typical mechanism for hot-dog fold thioesterases that utilizes an acidic residue for catalysis.

Induced-fit upon Ligand Binding Revealed by Crystal Structures of the Hot-dog Fold Thioesterase in Dynemicin Biosynthesis.,Liew CW, Sharff A, Kotaka M, Kong R, Sun H, Qureshi I, Bricogne G, Liang ZX, Lescar J J Mol Biol. 2010 Oct 1. PMID:20888341<ref>PMID:20888341</ref>

From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
<div class="pdbe-citations 2xem" style="background-color:#fffaf0;"></div>
== References ==
<references/>
__TOC__
</StructureSection>
[[Category: Large Structures]]
[[Category: Micromonospora chersina]]
[[Category: Bricogne G]]
[[Category: Kong R]]
[[Category: Kotaka M]]
[[Category: Lescar J]]
[[Category: Liang ZX]]
[[Category: Liew CW]]
[[Category: Sharff A]]