View source for 4nwv


==Crystal structure of Orsay virus-like particle==
<StructureSection load='4nwv' size='340' side='right'caption='[[4nwv]], [[Resolution|resolution]] 3.25&Aring;' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[4nwv]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Orsay_virus Orsay virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4NWV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4NWV FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.25&#8491;</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4nwv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4nwv OCA], [https://pdbe.org/4nwv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4nwv RCSB], [https://www.ebi.ac.uk/pdbsum/4nwv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4nwv ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/E9KNV5_9VIRU E9KNV5_9VIRU] 
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
Orsay, the first virus discovered to naturally infect Caenorhabditis elegans or any nematode, has a bipartite, positive-sense RNA genome. Sequence analyses show that Orsay is related to nodaviruses, but molecular characterizations of Orsay reveal several unique features, such as the expression of a capsid-delta fusion protein and the use of an ATG-independent mechanism for translation initiation. Here we report the crystal structure of an Orsay virus-like particle assembled from recombinant capsid protein (CP). Orsay capsid has a T = 3 icosahedral symmetry with 60 trimeric surface spikes. Each CP can be divided into three regions: an N-terminal arm that forms an extended protein interaction network at the capsid interior, an S domain with a jelly-roll, beta-barrel fold forming the continuous capsid, and a P domain that forms surface spike projections. The structure of the Orsay S domain is best aligned to T = 3 plant RNA viruses but exhibits substantial differences compared with the insect-infecting alphanodaviruses, which also lack the P domain in their CPs. The Orsay P domain is remotely related to the P1 domain in calicivirus and hepatitis E virus, suggesting a possible evolutionary relationship. Removing the N-terminal arm produced a slightly expanded capsid with fewer nucleic acids packaged, suggesting that the arm is important for capsid stability and genome packaging. Because C. elegans-Orsay serves as a highly tractable model for studying viral pathogenesis, our results should provide a valuable structural framework for further studies of Orsay replication and infection.

Crystal structure of a nematode-infecting virus.,Guo YR, Hryc CF, Jakana J, Jiang H, Wang D, Chiu W, Zhong W, Tao YJ Proc Natl Acad Sci U S A. 2014 Sep 2;111(35):12781-6. doi:, 10.1073/pnas.1407122111. Epub 2014 Aug 18. PMID:25136116<ref>PMID:25136116</ref>

From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
<div class="pdbe-citations 4nwv" style="background-color:#fffaf0;"></div>
== References ==
<references/>
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</StructureSection>
[[Category: Large Structures]]
[[Category: Orsay virus]]
[[Category: Guo YR]]
[[Category: Tao YJ]]