View source for 4r05


==Crystal structure of the refolded DENV3 methyltransferase==
<StructureSection load='4r05' size='340' side='right'caption='[[4r05]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[4r05]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Dengue_virus_3 Dengue virus 3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4R05 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4R05 FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4r05 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4r05 OCA], [https://pdbe.org/4r05 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4r05 RCSB], [https://www.ebi.ac.uk/pdbsum/4r05 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4r05 ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/C1KBQ3_9FLAV C1KBQ3_9FLAV] Envelope protein E binding to host cell surface receptor is followed by virus internalization through clathrin-mediated endocytosis. Envelope protein E is subsequently involved in membrane fusion between virion and host late endosomes. Synthesized as a homodimer with prM which acts as a chaperone for envelope protein E. After cleavage of prM, envelope protein E dissociate from small envelope protein M and homodimerizes (By similarity).[SAAS:SAAS026470_004_099774]
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== Publication Abstract from PubMed ==
Methylation of flavivirus RNA is vital for its stability and translation in the infected host cell. This methylation is mediated by the flavivirus methyltransferase (MTase), which methylates the N7 and 2'-O positions of the viral RNA cap by utilizing S-adenosyl-L-methionine (SAM) as a methyl donor. In this report, we demonstrate that SAM, in contrast to the reaction by-product S-adenosyl-L-homocysteine (SAH) which was assumed previously, is co-purified with the Dengue (DNV) and West Nile virus (WNV) MTases produced in Escherichia coli (E. coli). This endogenous SAM can be removed by denaturation and refolding of the MTase protein. The refolded MTase of DNV serotype 3 (DNV3) displays methylation activity comparable to native enzyme, and its crystal structure at 2.1 A is almost identical to that of native MTase. We characterized the binding of Sinefungin (SIN), a previously described SAM-analog inhibitor of MTase function, to the native and refolded DNV3 MTase by isothermal titration calorimetry, and found that SIN binds to refolded MTase with more than sixteen times the affinity of SIN binding to the MTase purified natively. Moreover, we show that SAM is also co-purified with other flavivirus MTases, indicating that purification by refolding may be a generally applicable tool for studying flavivirus MTase inhibition.

Refolding of a fully functional flavivirus methyltransferase revealed that S-adenosyl methionine but not S-adenosyl homocysteine is co-purified with flavivirus methyltransferase.,Brecher MB, Li Z, Zhang J, Chen H, Lin Q, Liu B, Li H Protein Sci. 2014 Oct 29. doi: 10.1002/pro.2594. PMID:25352331<ref>PMID:25352331</ref>

From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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<div class="pdbe-citations 4r05" style="background-color:#fffaf0;"></div>

==See Also==
*[[Nonstructural protein 3D structures|Nonstructural protein 3D structures]]
== References ==
<references/>
__TOC__
</StructureSection>
[[Category: Dengue virus 3]]
[[Category: Large Structures]]
[[Category: Brecher MB]]
[[Category: Chen H]]
[[Category: Li HM]]
[[Category: Li Z]]
[[Category: Lin Q]]
[[Category: Liu B]]
[[Category: Zhang J]]