View source for 4udy


==NCO- bound to cluster C of Ni,Fe-CO dehydrogenase at true-atomic resolution==
<StructureSection load='4udy' size='340' side='right'caption='[[4udy]], [[Resolution|resolution]] 1.09&Aring;' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[4udy]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Carboxydothermus_hydrogenoformans Carboxydothermus hydrogenoformans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4UDY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4UDY FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.09&#8491;</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=0NM:CYANIC+ACID'>0NM</scene>, <scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4udy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4udy OCA], [https://pdbe.org/4udy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4udy RCSB], [https://www.ebi.ac.uk/pdbsum/4udy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4udy ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/COOS2_CARHZ COOS2_CARHZ] CODH oxidizes carbon monoxide coupled, via CooF, to the reduction of a hydrogen cation by a hydrogenase (possibly CooH) (By similarity).
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
Ni,Fe-containing CO dehydrogenases (CODHs) use a [NiFe4 S4 ] cluster, termed cluster C, to reversibly reduce CO2 to CO with high turnover number. Binding to Ni and Fe activates CO2 , but current crystal structures have insufficient resolution to analyze the geometry of bound CO2 and reveal the extent and nature of its activation. The crystal structures of CODH in complex with CO2 and the isoelectronic inhibitor NCO- are reported at true atomic resolution (dmin &lt;/=1.1 A). Like CO2 , NCO- is a mu2 ,eta2 ligand of the cluster and acts as a mechanism-based inhibitor. While bound CO2 has the geometry of a carboxylate group, NCO- is transformed into a carbamoyl group, thus indicating that both molecules undergo a formal two-electron reduction after binding and are stabilized by substantial pi backbonding. The structures reveal the combination of stable mu2 ,eta2 coordination by Ni and Fe2 with reductive activation as the basis for both the turnover of CO2 and inhibition by NCO- .

How the [NiFe S ] Cluster of CO Dehydrogenase Activates CO and NCO,Fesseler J, Jeoung JH, Dobbek H Angew Chem Int Ed Engl. 2015 Apr 29. doi: 10.1002/anie.201501778. PMID:25926100<ref>PMID:25926100</ref>

From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
<div class="pdbe-citations 4udy" style="background-color:#fffaf0;"></div>

==See Also==
*[[Carbon monoxide dehydrogenase 3D structures|Carbon monoxide dehydrogenase 3D structures]]
== References ==
<references/>
__TOC__
</StructureSection>
[[Category: Carboxydothermus hydrogenoformans]]
[[Category: Large Structures]]
[[Category: Dobbek H]]
[[Category: Fesseler J]]
[[Category: Jeoung J-H]]