View source for 4uv4


==Crystal structure of anti-FPR Fpro0165 Fab fragment==
<StructureSection load='4uv4' size='340' side='right'caption='[[4uv4]], [[Resolution|resolution]] 3.08&Aring;' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[4uv4]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4UV4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4UV4 FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.08&#8491;</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4uv4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4uv4 OCA], [https://pdbe.org/4uv4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4uv4 RCSB], [https://www.ebi.ac.uk/pdbsum/4uv4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4uv4 ProSAT]</span></td></tr>
</table>
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
Abstract Therapeutic monoclonal antibodies targeting G-protein-coupled receptors (GPCRs) are desirable for intervention in a wide range of disease processes. The discovery of such antibodies is challenging due to a lack of stability of many GPCRs as purified proteins. We describe here the generation of Fpro0165, a human anti-formyl peptide receptor 1 (FPR1) antibody generated by variable domain engineering of an antibody derived by immunization of transgenic mice expressing human variable region genes. Antibody isolation and subsequent engineering of affinity, potency and species cross-reactivity using phage display were achieved using FPR1 expressed on HEK cells for immunization and selection, along with calcium release cellular assays for antibody screening. Fpro0165 shows full neutralization of formyl peptide-mediated activation of primary human neutrophils. A crystal structure of the Fpro0165 Fab shows a long, protruding VH CDR3 of 24 amino acids and in silico docking with a homology model of FPR1 suggests that this long VH CDR3 is critical to the predicted binding mode of the antibody. Antibody mutation studies identify the apex of the long VH CDR3 as key to mediating the species cross-reactivity profile of the antibody. This study illustrates an approach for antibody discovery and affinity engineering to typically intractable membrane proteins such as GPCRs.

Affinity maturation of a novel antagonistic human monoclonal antibody with a long V CDR3 targeting the Class A GPCR formyl-peptide receptor 1.,Douthwaite JA, Sridharan S, Huntington C, Hammersley J, Marwood R, Hakulinen JK, Ek M, Sjogren T, Rider D, Privezentzev C, Seaman JC, Cariuk P, Knights V, Young J, Wilkinson T, Sleeman M, Finch DK, Lowe DC, Vaughan TJ MAbs. 2014 Nov 19:0. PMID:25484051<ref>PMID:25484051</ref>

From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
<div class="pdbe-citations 4uv4" style="background-color:#fffaf0;"></div>
== References ==
<references/>
__TOC__
</StructureSection>
[[Category: Homo sapiens]]
[[Category: Large Structures]]
[[Category: Cariuk P]]
[[Category: Douthwaite JA]]
[[Category: Ek M]]
[[Category: Finch DK]]
[[Category: Hakulinen JK]]
[[Category: Hammersley J]]
[[Category: Huntington C]]
[[Category: Knights V]]
[[Category: Lowe DC]]
[[Category: Marwood R]]
[[Category: Privezentzev C]]
[[Category: Rider D]]
[[Category: Seaman JC]]
[[Category: Sjogren T]]
[[Category: Sleeman M]]
[[Category: Sridharan S]]
[[Category: Vaughan TJ]]
[[Category: Wilkinson T]]
[[Category: Young J]]