View source for 5fux


==catalytic domain of Thymidine kinase from Trypanosoma brucei with dTMP==
<StructureSection load='5fux' size='340' side='right'caption='[[5fux]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[5fux]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Trypanosoma_brucei Trypanosoma brucei]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5FUX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5FUX FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=QBT:[(2R,3S,5R)-3-HYDROXY-5-[(5S)-5-METHYL-2,4-DIOXO-1,3-DIAZINAN-1-YL]OXOLAN-2-YL]METHYL+DIHYDROGEN+PHOSPHATE'>QBT</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5fux FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5fux OCA], [https://pdbe.org/5fux PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5fux RCSB], [https://www.ebi.ac.uk/pdbsum/5fux PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5fux ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/Q38CF2_TRYB2 Q38CF2_TRYB2] 
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
Thymidine kinase (TK) is a key enzyme in the pyrimidine salvage pathway which catalyzes the transfer of the gamma-phosphate of ATP to 2'-deoxythymidine (dThd) forming thymidine monophosphate (dTMP). Unlike other type II TKs, the Trypanosoma brucei enzyme (TbTK) is a tandem protein with two TK homolog domains of which only the C-terminal one is active. In this study, we establish that TbTK is essential for parasite viability and cell cycle progression, independently of extracellular pyrimidine concentrations. We show that expression of TbTK is cell cycle regulated and that depletion of TbTK leads to strongly diminished dTTP pools and DNA damage indicating intracellular dThd to be an essential intermediate metabolite for the synthesis of thymine-derived nucleotides. In addition, we report the X-ray structure of the catalytically active domain of TbTK in complex with dThd and dTMP at resolutions up to 2.2 A. In spite of the high conservation of the active site residues, the structures reveal a widened active site cavity near the nucleobase moiety compared to the human enzyme. Our findings strongly support TbTK as a crucial enzyme in dTTP homeostasis and identify structural differences within the active site that could be exploited in the process of rational drug design. This article is protected by copyright. All rights reserved.

Cell cycle regulation and novel structural features of thymidine kinase, an essential enzyme in Trypanosoma brucei.,Valente M, Timm J, Castillo-Acosta VM, Ruiz-Perez LM, Balzarini T, Nettleship JE, Bird LE, Rada H, Wilson KS, Gonzalez-Pacanowska D Mol Microbiol. 2016 Jul 18. doi: 10.1111/mmi.13467. PMID:27426054<ref>PMID:27426054</ref>

From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
<div class="pdbe-citations 5fux" style="background-color:#fffaf0;"></div>

==See Also==
*[[Thymidine kinase 3D structures|Thymidine kinase 3D structures]]
== References ==
<references/>
__TOC__
</StructureSection>
[[Category: Large Structures]]
[[Category: Trypanosoma brucei]]
[[Category: Balzarini T]]
[[Category: Castillo-Acosta V]]
[[Category: Gonzalez-Pacanowska D]]
[[Category: Nettleship JE]]
[[Category: Rada H]]
[[Category: Timm J]]
[[Category: Valente M]]
[[Category: Wilson KS]]