View source for 5nys


==M2 G-quadruplex dilute solution==
<StructureSection load='5nys' size='340' side='right'caption='[[5nys]]' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[5nys]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5NYS OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5NYS FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5nys FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5nys OCA], [https://pdbe.org/5nys PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5nys RCSB], [https://www.ebi.ac.uk/pdbsum/5nys PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5nys ProSAT]</span></td></tr>
</table>
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== Publication Abstract from PubMed ==
Molecular crowding conditions provided by high concentration of cosolutes are utilized for characterization of biomolecules in cell-mimicking environment and development of drug-delivery systems. In this context, (poly)ethylene glycols are often used for studying non-canonical DNA structures termed G-quadruplexes, which came into focus by emerging structural biology findings and new therapeutic drug design approaches. Recently, several reports were made arguing against using (poly)ethylene glycols in role of molecular crowding agents due to their direct impact on DNA G-quadruplex stability and topology. However, the available data on structural details underlying DNA interaction is very scarce and thus limits in-depth comprehension. Herein, structural and thermodynamic analyses were strategically combined to assess G-quadruplex-cosolute interactions and address previously reported variances regarding the driving forces of G-rich DNA structural transformations under molecular crowding conditions. With the use of complementary (CD, NMR and UV) spectroscopic methods and model approach we characterized DNA G-quadruplex in the presence of the smallest and one of the largest typically used (poly)ethylene glycols. Dehydration effect is the key contributor to ethylene-glycol-induced increased stability of the G-quadruplex, which is in the case of the large cosolute mainly guided by the subtle direct interactions between PEG 8000 and the outer G-quartet regions.

Pursuing origins of (poly)ethylene glycol-induced G-quadruplex structural modulations.,Trajkovski M, Endoh T, Tateishi-Karimata H, Ohyama T, Tanaka S, Plavec J, Sugimoto N Nucleic Acids Res. 2018 May 4;46(8):4301-4315. doi: 10.1093/nar/gky250. PMID:29648656<ref>PMID:29648656</ref>

From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
<div class="pdbe-citations 5nys" style="background-color:#fffaf0;"></div>
== References ==
<references/>
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</StructureSection>
[[Category: Large Structures]]
[[Category: Synthetic construct]]
[[Category: Endoh T]]
[[Category: Plavec J]]
[[Category: Sugimoto N]]
[[Category: Tateishi-Karimata H]]
[[Category: Trajkovski M]]