View source for 5wdr


==Choanoflagellate Salpingoeca rosetta Ras with GMP-PNP==
<StructureSection load='5wdr' size='340' side='right'caption='[[5wdr]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[5wdr]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Choanoflagellata Choanoflagellata]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5WDR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5WDR FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6&#8491;</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GNP:PHOSPHOAMINOPHOSPHONIC+ACID-GUANYLATE+ESTER'>GNP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5wdr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5wdr OCA], [https://pdbe.org/5wdr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5wdr RCSB], [https://www.ebi.ac.uk/pdbsum/5wdr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5wdr ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/F2UBE5_SALR5 F2UBE5_SALR5] 
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
Ras proteins are highly conserved signaling molecules that exhibit regulated, nucleotide-dependent switching between active and inactive states. The high conservation of Ras requires mechanistic explanation, especially given the general mutational tolerance of proteins. Here, we use deep mutational scanning, biochemical analysis and molecular simulations to understand constraints on Ras sequence. Ras exhibits global sensitivity to mutation when regulated by a GTPase activating protein and a nucleotide exchange factor. Removing the regulators shifts the distribution of mutational effects to be largely neutral, and reveals hotspots of activating mutations in residues that restrain Ras dynamics and promote the inactive state. Evolutionary analysis, combined with structural and mutational data, argue that Ras has co-evolved with its regulators in the vertebrate lineage. Overall, our results show that sequence conservation in Ras depends strongly on the biochemical network in which it operates, providing a framework for understanding the origin of global selection pressures on proteins.

Deconstruction of the Ras switching cycle through saturation mutagenesis.,Bandaru P, Shah NH, Bhattacharyya M, Barton JP, Kondo Y, Cofsky JC, Gee CL, Chakraborty AK, Kortemme T, Ranganathan R, Kuriyan J Elife. 2017 Jul 7;6. pii: e27810. doi: 10.7554/eLife.27810. PMID:28686159<ref>PMID:28686159</ref>

From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
<div class="pdbe-citations 5wdr" style="background-color:#fffaf0;"></div>
== References ==
<references/>
__TOC__
</StructureSection>
[[Category: Choanoflagellata]]
[[Category: Large Structures]]
[[Category: Gee CL]]
[[Category: Kondo Y]]
[[Category: Kuriyan J]]