View source for 5wka


==Crystal structure of a GH1 beta-glucosidase retrieved from microbial metagenome of Poraque Amazon lake==
<StructureSection load='5wka' size='340' side='right'caption='[[5wka]], [[Resolution|resolution]] 2.75&Aring;' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[5wka]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Metagenome Metagenome]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5WKA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5WKA FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.75&#8491;</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5wka FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5wka OCA], [https://pdbe.org/5wka PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5wka RCSB], [https://www.ebi.ac.uk/pdbsum/5wka PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5wka ProSAT]</span></td></tr>
</table>
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== Publication Abstract from PubMed ==
The Amazon region holds most of the biological richness of Brazil. Despite their ecological and biotechnological importance, studies related to microorganisms from this region are limited. Metagenomics leads to exciting discoveries, mainly regarding non-cultivable microorganisms. Herein, we report the discovery of a novel beta-glucosidase (glycoside hydrolase family 1) gene from a metagenome from Lake Poraque in the Amazon region. The gene encodes a protein of 52.9kDa, named AmBgl-LP, which was recombinantly expressed in Escherichia coli and biochemically and structurally characterized. Although AmBgl-LP hydrolyzed the synthetic substrate p-nitrophenyl-beta-d-glucopyranoside (pNPbetaG) and the natural substrate cellobiose, it showed higher specificity for pNPbetaG (kcat/Km=6s(-1).mM(-1)) than cellobiose (kcat/Km=0.6s(-1).mM(-1)). AmBgl-LP showed maximum activity at 40 degrees C and pH6.0 when pNPbetaG was used as the substrate. Glucose is a competitive inhibitor of AmBgl-LP, presenting a Ki of 14mM. X-ray crystallography and Small Angle X-ray Scattering were used to determine the AmBgl-LP three-dimensional structure and its oligomeric state. Interestingly, despite sharing similar active site architecture with other structurally characterized GH1 family members which are monomeric, AmBgl-LP forms stable dimers in solution. The identification of new GH1 members by metagenomics might extend our understanding of the molecular mechanisms and diversity of these enzymes, besides enabling us to survey their industrial applications.

A novel beta-glucosidase isolated from the microbial metagenome of Lake Poraque (Amazon, Brazil).,Toyama D, de Morais MAB, Ramos FC, Zanphorlin LM, Tonoli CCC, Balula AF, de Miranda FP, Almeida VM, Marana SR, Ruller R, Murakami MT, Henrique-Silva F Biochim Biophys Acta. 2018 Feb 16. pii: S1570-9639(18)30017-7. doi:, 10.1016/j.bbapap.2018.02.001. PMID:29454992<ref>PMID:29454992</ref>

From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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<div class="pdbe-citations 5wka" style="background-color:#fffaf0;"></div>

==See Also==
*[[Beta-glucosidase 3D structures|Beta-glucosidase 3D structures]]
== References ==
<references/>
__TOC__
</StructureSection>
[[Category: Large Structures]]
[[Category: Metagenome]]
[[Category: Henrique-Silva F]]
[[Category: Miranda FP]]
[[Category: Morais MAB]]
[[Category: Murakami MT]]
[[Category: Ramos FC]]
[[Category: Ruller R]]
[[Category: Tonoli CCC]]
[[Category: Toyama D]]
[[Category: Zanphorlin LM]]