View source for 5ygh


==Crystal Structure of the Capsid Protein from Zika Virus==
<StructureSection load='5ygh' size='340' side='right'caption='[[5ygh]], [[Resolution|resolution]] 1.88&Aring;' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[5ygh]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Zika_virus Zika virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5YGH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5YGH FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.884&#8491;</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5ygh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ygh OCA], [https://pdbe.org/5ygh PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5ygh RCSB], [https://www.ebi.ac.uk/pdbsum/5ygh PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5ygh ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/A0A0X8GJ44_ZIKV A0A0X8GJ44_ZIKV] 
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
Recently, Zika virus (ZIKV) emerged as a global public health concern, and is distinct from other flaviviruses in many aspects, e.g., causing transplacental infection, fetal abnormalities and vector-independent transmission through body fluids in humans. The capsid (C) protein is a multifunctional protein, since it binds to viral RNA in the process of nucleocapsid assembly and plays important roles in virus infection processes by interacting with cellular proteins, modulating cellular metabolism, apoptosis and immune response. Here we solved the crystal structure of ZIKV C protein at a resolution of 1.9A. The ZIKV C protein structure contains four alpha helices with a long pre-alpha1 loop, and forms dimers. The unique long pre-alpha1 loop in ZIKV C contributes to the tighter association of dimeric assembly and renders a divergent hydrophobic feature at the lipid bilayer interface in comparison with the known C structures of West Nile and dengue viruses. We reported the interaction between the ZIKV C protein and lipid droplets through confocal microscopy analysis. Substitutions of key amino acids in the pre-alpha1 loop of ZIKV C disrupted the interaction with lipid droplets, indicating the loop is critical for membrane association. We also recognized ZIKV C protein possesses broad binding capability to different nucleotide types, including single-stranded and double-stranded RNAs or DNAs. Furthermore, the highly positively charged interface, mainly formed by alpha4 helix, is proposed to be responsible for nucleotide binding. These findings will greatly enhance our understanding of ZIKV C protein, providing information for anti-ZIKV drug design targeting the C protein.

Crystal Structure of the Capsid Protein from Zika Virus.,Shang Z, Song H, Shi Y, Qi J, Gao GF J Mol Biol. 2018 Feb 15. pii: S0022-2836(18)30076-7. doi:, 10.1016/j.jmb.2018.02.006. PMID:29454707<ref>PMID:29454707</ref>

From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
<div class="pdbe-citations 5ygh" style="background-color:#fffaf0;"></div>

==See Also==
*[[Virus coat proteins 3D structures|Virus coat proteins 3D structures]]
== References ==
<references/>
__TOC__
</StructureSection>
[[Category: Large Structures]]
[[Category: Zika virus]]
[[Category: Gao GF]]
[[Category: Qi J]]
[[Category: Shang Z]]
[[Category: Shi Y]]
[[Category: Song H]]