View source for 6b17


==Design of a short thermally stable alpha-helix embedded in a macrocycle==
<StructureSection load='6b17' size='340' side='right'caption='[[6b17]], [[Resolution|resolution]] 1.25&Aring;' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[6b17]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6B17 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6B17 FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.25&#8491;</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=B0I:3,3-dimethyl-1,1-biphenyl'>B0I</scene>, <scene name='pdbligand=DAL:D-ALANINE'>DAL</scene>, <scene name='pdbligand=H00:4-sulfanylbutanoic+acid'>H00</scene>, <scene name='pdbligand=NH2:AMINO+GROUP'>NH2</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6b17 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6b17 OCA], [https://pdbe.org/6b17 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6b17 RCSB], [https://www.ebi.ac.uk/pdbsum/6b17 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6b17 ProSAT]</span></td></tr>
</table>
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
Although helices play key roles in peptide-protein and protein-protein interactions, the helical conformation is generally unstable for short peptides (10 - 15 residues) in aqueous solution in the absence of their binding partners. Thus, stabilizing the helical conformation of peptides can lead to increases in binding potency, specificity, and stability towards proteolytic degradation. Helices have been successfully stabilized by introducing sidechain-to-sidechain cross-links within the central portion of the helix. However, this approach leaves the helical ends free, leading to fraying and exposure of the non-hydrogen bonded amide groups to solvent. Here, we develop a "capped-strapped" peptide strategy to stabilize helices by embedding the entire length of the helix within a macrocycle, which also includes a semi-rigid organic template as well as end-capping interactions. We have designed a 10-residue capped-strapped helical peptide that behaves like a mini-protein, with a cooperative thermal unfolding transition and Tm ~ 70 degrees C, unprecedented for helical peptides of this length. The NMR structure determination confirmed the design, and X-ray crystallography revealed a novel quaternary structure with implications for foldamer design.

Design of a short thermally stable alpha-helix embedded in a macrocycle.,Wu H, Acharyya A, Wu Y, Liu L, Jo H, Gai F, DeGrado W Chembiochem. 2018 Feb 7. doi: 10.1002/cbic.201800026. PMID:29417711<ref>PMID:29417711</ref>

From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
<div class="pdbe-citations 6b17" style="background-color:#fffaf0;"></div>
== References ==
<references/>
__TOC__
</StructureSection>
[[Category: Large Structures]]
[[Category: Synthetic construct]]
[[Category: Acharyya A]]
[[Category: DeGrado WF]]
[[Category: Gai F]]
[[Category: Jo H]]
[[Category: Liu L]]
[[Category: Wu H]]
[[Category: Wu Y]]