View source for 6nmv


==Non-Blocking Fab 218 anti-SIRP-alpha antibody in complex with SIRP-alpha Variant 1==
<StructureSection load='6nmv' size='340' side='right'caption='[[6nmv]], [[Resolution|resolution]] 2.61&Aring;' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[6nmv]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6NMV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6NMV FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.61&#8491;</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6nmv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6nmv OCA], [https://pdbe.org/6nmv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6nmv RCSB], [https://www.ebi.ac.uk/pdbsum/6nmv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6nmv ProSAT]</span></td></tr>
</table>
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
Targeting the CD47-signal-regulatory protein alpha (SIRPalpha) pathway represents a novel therapeutic approach to enhance anti-cancer immunity by promoting both innate and adaptive immune responses. Unlike CD47, which is expressed ubiquitously, SIRPalpha expression is mainly restricted to myeloid cells and neurons. Therefore, compared to CD47-targeted therapies, targeting SIRPalpha may result in differential safety and efficacy profiles, potentially enabling lower effective doses and improved pharmacokinetics and pharmacodynamics. The development of effective SIRPalpha antagonists is restricted by polymorphisms within the CD47-binding domain of SIRPalpha, necessitating pan-allele reactive anti-SIRPalpha antibodies for therapeutic intervention in diverse patient populations. We immunized wild-type and human antibody transgenic chickens with a multi-allele and multi-species SIRPalpha regimen in order to discover pan-allelic and pan-mammalian reactive anti-SIRPalpha antibodies suitable for clinical translation. A total of 200 antibodies were isolated and screened for SIRPalpha reactivity from which approximately 70 antibodies with diverse SIRPalpha binding profiles, sequence families, and epitopes were selected for further characterization. A subset of anti-SIRPalpha antibodies bound to both human SIRPalpha v1 and v2 alleles with high affinity ranging from low nanomolar to picomolar, potently antagonized the CD47/SIRPalpha interaction, and potentiated macrophage-mediated antibody-dependent cellular phagocytosis in vitro. X-ray crystal structures of five anti-SIRPalpha antigen-binding fragments, each with unique epitopes, in complex with SIRPalpha (PDB codes 6NMV, 6NMU, 6NMT, 6NMS, and 6NMR) are reported. Furthermore, some of the anti-SIRPalpha antibodies cross-react with cynomolgus SIRPalpha and various mouse SIRPalpha alleles (BALB/c, NOD, BL/6), which can facilitate preclinical to clinical development. These properties provide an attractive rationale to advance the development of these anti-SIRPalpha antibodies as a novel therapy for advanced malignancies. Abbreviations: ADCC: antibody-dependent cellular cytotoxicity; ADCP: antibody-dependent cellular phagocytosis; CFSE: carboxyfluorescein succinimidyl ester; Fab: fragment antigen binding; Fc: fragment crystallizable; FcgammaR: Fcgamma receptor; Ig: immunoglobulin; IND: investigational new drug; MDM solidus in circle: monocyte-derived macrophage; NOD: non-obese diabetic; scFv: single chain fragment variable; SCID: severe combined immunodeficiency; SIRP: signal-regulatory protein.

Discovery of high affinity, pan-allelic, and pan-mammalian reactive antibodies against the myeloid checkpoint receptor SIRPalpha.,Sim J, Sockolosky JT, Sangalang E, Izquierdo S, Pedersen D, Harriman W, Wibowo AS, Carter J, Madan A, Doyle L, Harrabi O, Kauder SE, Chen A, Kuo TC, Wan H, Pons J MAbs. 2019 Aug/Sep;11(6):1036-1052. doi: 10.1080/19420862.2019.1624123. Epub 2019, Jul 1. PMID:31257988<ref>PMID:31257988</ref>

From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
<div class="pdbe-citations 6nmv" style="background-color:#fffaf0;"></div>

==See Also==
*[[Antibody 3D structures|Antibody 3D structures]]
*[[Tyrosine phosphatase 3D structures|Tyrosine phosphatase 3D structures]]
*[[3D structures of human antibody|3D structures of human antibody]]
== References ==
<references/>
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</StructureSection>
[[Category: Homo sapiens]]
[[Category: Large Structures]]
[[Category: Carter JJ]]
[[Category: Sim J]]
[[Category: Wibowo AS]]