View source for 6rny


==PFV intasome - nucleosome strand transfer complex==
<SX load='6rny' size='340' side='right' viewer='molstar' caption='[[6rny]], [[Resolution|resolution]] 3.90&Aring;' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[6rny]] is a 18 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens], [https://en.wikipedia.org/wiki/Human_spumaretrovirus Human spumaretrovirus] and [https://en.wikipedia.org/wiki/Pyrobaculum_filamentous_virus_1 Pyrobaculum filamentous virus 1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6RNY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6RNY FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 3.9&#8491;</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6rny FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6rny OCA], [https://pdbe.org/6rny PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6rny RCSB], [https://www.ebi.ac.uk/pdbsum/6rny PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6rny ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/H33_HUMAN H33_HUMAN] 
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
Retroviral integrase can efficiently utilise nucleosomes for insertion of the reverse-transcribed viral DNA. In face of the structural constraints imposed by the nucleosomal structure, integrase gains access to the scissile phosphodiester bonds by lifting DNA off the histone octamer at the site of integration. To clarify the mechanism of DNA looping by integrase, we determined a 3.9 A resolution structure of the prototype foamy virus intasome engaged with a nucleosome core particle. The structural data along with complementary single-molecule Forster resonance energy transfer measurements reveal twisting and sliding of the nucleosomal DNA arm proximal to the integration site. Sliding the nucleosomal DNA by approximately two base pairs along the histone octamer accommodates the necessary DNA lifting from the histone H2A-H2B subunits to allow engagement with the intasome. Thus, retroviral integration into nucleosomes involves the looping-and-sliding mechanism for nucleosomal DNA repositioning, bearing unexpected similarities to chromatin remodelers.

Retroviral integration into nucleosomes through DNA looping and sliding along the histone octamer.,Wilson MD, Renault L, Maskell DP, Ghoneim M, Pye VE, Nans A, Rueda DS, Cherepanov P, Costa A Nat Commun. 2019 Sep 13;10(1):4189. doi: 10.1038/s41467-019-12007-w. PMID:31519882<ref>PMID:31519882</ref>

From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
<div class="pdbe-citations 6rny" style="background-color:#fffaf0;"></div>

==See Also==
*[[Histone 3D structures|Histone 3D structures]]
*[[Retroviral integrase 3D structures|Retroviral integrase 3D structures]]
== References ==
<references/>
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</SX>
[[Category: Homo sapiens]]
[[Category: Human spumaretrovirus]]
[[Category: Large Structures]]
[[Category: Pyrobaculum filamentous virus 1]]
[[Category: Cherepanov P]]
[[Category: Costa A]]
[[Category: Maskell DP]]
[[Category: Pye VE]]
[[Category: Renault L]]