View source for 7cfa


==Crystal structure of the restriction DNA glycosylase R.CcoLI==
<StructureSection load='7cfa' size='340' side='right'caption='[[7cfa]], [[Resolution|resolution]] 2.35&Aring;' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[7cfa]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Campylobacter_coli Campylobacter coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7CFA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7CFA FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.355&#8491;</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7cfa FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7cfa OCA], [https://pdbe.org/7cfa PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7cfa RCSB], [https://www.ebi.ac.uk/pdbsum/7cfa PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7cfa ProSAT]</span></td></tr>
</table>
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== Publication Abstract from PubMed ==
While most restriction enzymes catalyze the hydrolysis of phosphodiester bonds at specific nucleotide sequences in DNA, restriction enzymes of the HALFPIPE superfamily cleave N-glycosidic bonds, similar to DNA glycosylases. Apurinic/apyrimidinic (AP) sites generated by HALFPIPE superfamily proteins are cleaved by their inherent AP lyase activities, other AP endonuclease activities or heat-promoted beta-elimination. Although the HALFPIPE superfamily protein R.PabI, obtained from a hyperthermophilic archaea, Pyrococcus abyssi, shows weak AP lyase activity, HALFPIPE superfamily proteins in mesophiles, such as R.CcoLI from Campylobacter coli and R. HpyAXII from Helicobacter pylori, show significant AP lyase activities. To identify the structural basis for the AP lyase activity of R.CcoLI, we determined the structure of R.CcoLI by X-ray crystallography. The structure of R.CcoLI, obtained at 2.35-A resolution, shows that a conserved lysine residue (Lys71), which is stabilized by a characteristic beta-sheet structure of R.CcoLI, protrudes into the active site. The results of mutational assays indicate that Lys71 is important for the AP lyase activity of R.CcoLI. Our results help to elucidate the mechanism by which HALFPIPE superfamily proteins from mesophiles efficiently introduce double-strand breaks to specific sites on double-stranded DNA.

Crystal structure and DNA cleavage mechanism of the restriction DNA glycosylase R.CcoLI from Campylobacter coli.,Miyazono KI, Wang D, Ito T, Tanokura M Sci Rep. 2021 Jan 13;11(1):859. doi: 10.1038/s41598-020-79537-y. PMID:33441677<ref>PMID:33441677</ref>

From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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<div class="pdbe-citations 7cfa" style="background-color:#fffaf0;"></div>

==See Also==
*[[DNA glycosylase 3D structures|DNA glycosylase 3D structures]]
*[[Fructokinase|Fructokinase]]
== References ==
<references/>
__TOC__
</StructureSection>
[[Category: Campylobacter coli]]
[[Category: Large Structures]]
[[Category: Ito T]]
[[Category: Miyazono K]]
[[Category: Tanokura M]]
[[Category: Wang D]]