View source for 7nt2


==Crystal structure of SARS CoV2 main protease in complex with FSP006==
<StructureSection load='7nt2' size='340' side='right'caption='[[7nt2]], [[Resolution|resolution]] 2.15&Aring;' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7NT2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7NT2 FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.145&#8491;</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=DMS:DIMETHYL+SULFOXIDE'>DMS</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=URK:[(1S)-2-[(2,3-dimethoxyphenyl)methylamino]-1-(4-nitrophenyl)-2-oxidanylidene-ethyl]+prop-2-enoate'>URK</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7nt2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7nt2 OCA], [https://pdbe.org/7nt2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7nt2 RCSB], [https://www.ebi.ac.uk/pdbsum/7nt2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7nt2 ProSAT]</span></td></tr>
</table>
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
Protein-ligand crystallography is widely used to drive advanced stages of drug optimization or to generate starting points for medicinal chemistry by fragment soaking. However, recent progress in protein crystallography could allow for a more integrated role of protein crystallography into the early drug discovery cycle. Here we demonstrate for the first time the interplay of high throughput synthesis and high throughput crystallography. For this we describe a practical multicomponent reaction approach to high diversity acrylamides and esters from diverse building blocks. Surprisingly, in the majority of acrylamides precipitation during the reaction was observed, making library synthesis on a mmol scale and a 96-well format particularly comfortable. The synthesis is also suitable for a high throughput nanoscale format in a highly automated fashion. Moreover, we exemplified the synthesis on a multigram scale featuring good yield and simple work-up. High throughput crystallography of our libraires yielded potent covalent inhibitors of the main protease of the COVID-19 causing agent SARS-CoV-2 in a time efficient manner. Our results demonstrate, that the marriage of in situ HT synthesis of (covalent) libraires and HT crystallography has the potential to accelerate hit finding and to provide meaningful strategies for medicinal chemistry projects.

Marriage of high throughput synthesis and high throughput protein crystallography.,Doemling A, Sutanto F, Shaabani S, Oerlemans R, Deniz E, Patil P, Hadian M, Wang M, Sharpe ME, Groves MR Angew Chem Int Ed Engl. 2021 Jun 7. doi: 10.1002/anie.202105584. PMID:34097796<ref>PMID:34097796</ref>

From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
<div class="pdbe-citations 7nt2" style="background-color:#fffaf0;"></div>
== References ==
<references/>
__TOC__
</StructureSection>
[[Category: Large Structures]]
[[Category: Domling A]]
[[Category: Eris D]]
[[Category: Groves MR]]
[[Category: Oerlemans R]]
[[Category: Sharpe M]]
[[Category: Wang M]]