View source for 7rp4


==Crystal structure of KRAS G12C in complex with GNE-1952==
<StructureSection load='7rp4' size='340' side='right'caption='[[7rp4]], [[Resolution|resolution]] 2.15&Aring;' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7RP4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7RP4 FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.15&#8491;</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GDP:GUANOSINE-5-DIPHOSPHATE'>GDP</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MKZ:1-[4-[6-chloranyl-7-(5-methyl-1~{H}-indazol-4-yl)quinazolin-4-yl]piperazin-1-yl]propan-1-one'>MKZ</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7rp4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7rp4 OCA], [https://pdbe.org/7rp4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7rp4 RCSB], [https://www.ebi.ac.uk/pdbsum/7rp4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7rp4 ProSAT]</span></td></tr>
</table>
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
Small molecules that stabilize inactive protein conformations are an underutilized strategy for drugging dynamic or otherwise intractable proteins. To facilitate the discovery and characterization of such inhibitors, we created a screening platform to identify conformation-locking antibodies for molecular probes (CLAMPs) that distinguish and induce rare protein conformational states. Applying the approach to KRAS, we discovered CLAMPs that recognize the open conformation of KRAS(G12C) stabilized by covalent inhibitors. One CLAMP enables the visualization of KRAS(G12C) covalent modification in vivo and can be used to investigate response heterogeneity to KRAS(G12C) inhibitors in patient tumors. A second CLAMP enhances the affinity of weak ligands binding to the KRAS(G12C) switch II region (SWII) by stabilizing a specific conformation of KRAS(G12C), thereby enabling the discovery of such ligands that could serve as leads for the development of drugs in a high-throughput screen. We show that combining the complementary properties of antibodies and small molecules facilitates the study and drugging of dynamic proteins.

Conformation-locking antibodies for the discovery and characterization of KRAS inhibitors.,Davies CW, Oh AJ, Mroue R, Steffek M, Bruning JM, Xiao Y, Feng S, Jayakar S, Chan E, Arumugam V, Uribe SC, Drummond J, Frommlet A, Lu C, Franke Y, Merchant M, Koeppen H, Quinn JG, Malhotra S, Do S, Gazzard L, Purkey HE, Rudolph J, Mulvihill MM, Koerber JT, Wang W, Evangelista M Nat Biotechnol. 2022 Jan 6. pii: 10.1038/s41587-021-01126-9. doi:, 10.1038/s41587-021-01126-9. PMID:34992247<ref>PMID:34992247</ref>

From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
<div class="pdbe-citations 7rp4" style="background-color:#fffaf0;"></div>

==See Also==
*[[GTPase KRas 3D structures|GTPase KRas 3D structures]]
== References ==
<references/>
__TOC__
</StructureSection>
[[Category: Large Structures]]
[[Category: Oh A]]
[[Category: Tam C]]
[[Category: Wang W]]