View source for 8gvg


==The complex between public TCR TD08 and HLA-A24 bound to HIV-1 Nef138-8 (2F) peptide==
<StructureSection load='8gvg' size='340' side='right'caption='[[8gvg]], [[Resolution|resolution]] 3.37&Aring;' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[8gvg]] is a 5 chain structure with sequence from [https://en.wikipedia.org/wiki/HIV_whole-genome_vector_AA1305#18 HIV whole-genome vector AA1305#18] and [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8GVG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8GVG FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.37&#8491;</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8gvg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8gvg OCA], [https://pdbe.org/8gvg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8gvg RCSB], [https://www.ebi.ac.uk/pdbsum/8gvg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8gvg ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/F6IQZ4_HUMAN F6IQZ4_HUMAN] 
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
Cross-recognized public TCRs against HIV epitopes have been proposed to be important for the control of AIDS disease progression and HIV variants. The overlapping Nef138-8 and Nef138-10 peptides from the HIV Nef protein are HLA-A24-restricted immunodominant T cell epitopes, and an HIV mutant strain with a Y139F substitution in Nef protein can result in immune escape and is widespread in Japan. Here, we identified a pair of public TCRs specific to the HLA-A24-restricted Nef-138-8 epitope using PBMCs from White and Japanese patients, respectively, namely TD08 and H25-11. The gene use of the variable domain for TD08 and H25-11 is TRAV8-3, TRAJ10 for the alpha-chain and TRBV7-9, TRBD1*01, TRBJ2-5 for the beta-chain. Both TCRs can recognize wild-type and Y2F-mutated Nef138-8 epitopes. We further determined three complex structures, including TD08/HLA-A24-Nef138-8, H25-11/HLA-A24-Nef138-8, and TD08/HLA-A24-Nef138-8 (2F). Then, we revealed the molecular basis of the public TCR binding to the peptide HLA, which mostly relies on the interaction between the TCR and HLA and can tolerate the mutation in the Nef138-8 peptide. These findings promote the molecular understanding of T cell immunity against HIV epitopes and provide an important basis for the engineering of TCRs to develop T cell-based immunotherapy against HIV infection.

Molecular Basis for the Recognition of HIV Nef138-8 Epitope by a Pair of Human Public T Cell Receptors.,Ma K, Chai Y, Guan J, Tan S, Qi J, Kawana-Tachikawa A, Dong T, Iwamoto A, Shi Y, Gao GF J Immunol. 2022 Nov 1;209(9):1652-1661. doi: 10.4049/jimmunol.2200191. Epub 2022 , Sep 21. PMID:36130828<ref>PMID:36130828</ref>

From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
<div class="pdbe-citations 8gvg" style="background-color:#fffaf0;"></div>

==See Also==
*[[Beta-2 microglobulin 3D structures|Beta-2 microglobulin 3D structures]]
*[[MHC 3D structures|MHC 3D structures]]
*[[MHC I 3D structures|MHC I 3D structures]]
== References ==
<references/>
__TOC__
</StructureSection>
[[Category: HIV whole-genome vector AA1305#18]]
[[Category: Homo sapiens]]
[[Category: Large Structures]]
[[Category: Chai Y]]
[[Category: Dong T]]
[[Category: Gao GF]]
[[Category: Guan J]]
[[Category: Iwamoto A]]
[[Category: Kawana-Tachikawa A]]
[[Category: Ma K]]
[[Category: Qi J]]
[[Category: Shi Y]]
[[Category: Tan S]]