View source for 8hmm


==Crystal structure of AoRhaA==
<StructureSection load='8hmm' size='340' side='right'caption='[[8hmm]], [[Resolution|resolution]] 2.70&Aring;' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[8hmm]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Aspergillus_oryzae Aspergillus oryzae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8HMM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8HMM FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.7&#8491;</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8hmm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8hmm OCA], [https://pdbe.org/8hmm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8hmm RCSB], [https://www.ebi.ac.uk/pdbsum/8hmm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8hmm ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/Q2UJB1_ASPOR Q2UJB1_ASPOR] 
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
The subsequent biochemical and structural investigations of the purified recombinant alpha-l-rhamnosidase from Aspergillus oryzae expressed in Pichia pastoris, designated as rAoRhaA, were performed. The specific activity of the rAoRhaA wild-type was higher toward hesperidin and narirutin, where the l-rhamnose residue was alpha-1,6-linked to beta-d-glucoside, than toward neohesperidin and naringin with an alpha-1,2-linkage to beta-d-glucoside. However, no activity was detected toward quercitrin, myricitrin, and epimedin C. rAoRhaA kinetic analysis indicated that K(m) values for neohesperidin, naringin, and rutin were lower compared to those for hesperidin and narirutin. k(cat) values for hesperidin and narirutin were higher than those for neohesperidin, naringin, and rutin. High catalytic efficiency (k(cat) /K(m) ) toward hesperidin and narirutin was a result of a considerably high k(cat) value, while K(m) values for hesperidin and narirutin were higher than those for naringin, neohesperidin, and rutin. The crystal structure of rAoRhaA revealed that the catalytic domain was represented by an (alpha/alpha)(6) -barrel with the active site located in a deep cleft and two beta-sheet domains were also present in the N- and C-terminal sites of the catalytic domain. Additionally, five asparagine-attached N-acetylglucosamine molecules were observed. The catalytic residues of AoRhaA were suggested to be Asp254 and Glu524, and their catalytic roles were confirmed by mutational studies of D254N and E524Q variants, which lost their activity completely. Notably, three aspartic acids (Asp117, Asp249, and Asp261) located at the catalytic pocket were replaced with asparagine. D117N variant showed reduced activity. D249N and D261N variants activities drastically decreased.

Aspergillus oryzae alpha-l-rhamnosidase: Crystal structure and insight into the substrate specificity.,Makabe K, Ishida N, Kanezaki N, Shiono Y, Koseki T Proteins. 2024 Feb;92(2):236-245. doi: 10.1002/prot.26608. Epub 2023 Oct 11. PMID:37818702<ref>PMID:37818702</ref>

From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
<div class="pdbe-citations 8hmm" style="background-color:#fffaf0;"></div>
== References ==
<references/>
__TOC__
</StructureSection>
[[Category: Aspergillus oryzae]]
[[Category: Large Structures]]
[[Category: Koseki T]]
[[Category: Makabe K]]